Citrus Sinensis ID: 040238
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.950 | 0.616 | 0.336 | 2e-67 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.843 | 0.407 | 0.297 | 2e-41 | |
| Q9LRT1 | 1016 | Probably inactive leucine | no | no | 0.936 | 0.505 | 0.310 | 1e-40 | |
| O65440 | 992 | Leucine-rich repeat recep | no | no | 0.830 | 0.459 | 0.305 | 2e-40 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.748 | 0.329 | 0.313 | 2e-40 | |
| C0LGX3 | 993 | LRR receptor-like serine/ | no | no | 0.808 | 0.447 | 0.310 | 3e-40 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.766 | 0.375 | 0.319 | 8e-38 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.792 | 0.347 | 0.298 | 9e-38 | |
| O22938 | 890 | Leucine-rich repeat recep | no | no | 0.734 | 0.452 | 0.312 | 3e-37 | |
| Q9FN37 | 1036 | Phytosulfokine receptor 2 | no | no | 0.857 | 0.454 | 0.311 | 4e-37 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function desciption |
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Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 211/627 (33%), Positives = 289/627 (46%), Gaps = 105/627 (16%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L L L N G++ SIGNL L + ++SG I S NL++L L+ N++
Sbjct: 232 LVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFT 291
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLS-------VLTKATSNTTSQKLKYIGLRSCNLTKF 113
T D ++ + NLE+ +S N S +L + + Q+ ++ G T
Sbjct: 292 STFPFD--MSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSS 349
Query: 114 PNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANK 173
LQ+ L L NR+ G +P+ + + NL L+ISHN TG + N
Sbjct: 350 STKLQD------LILGRNRLHGPIPESI--SRLLNLEELDISHNNFTGAIPPTISKLVN- 400
Query: 174 GDLLTFDLSSNNLQGPLPV----------------------PPPGTIHYLASN-NSLTGE 210
LL DLS NNL+G +P I L N NS G
Sbjct: 401 --LLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGP 458
Query: 211 IPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK---- 266
IP IC L+ L L LS+N SG +P C+ N S + L+L NNF GT+P+ F K
Sbjct: 459 IPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATEL 518
Query: 267 ----------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYG 316
E + P+SLINC LE + + +N+I D FPSWL +LP+L+VL LRSN FYG
Sbjct: 519 VSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYG 578
Query: 317 IIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW------------------------ 352
+ GF LRIID+S+N F GTLP F W
Sbjct: 579 PLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSY 638
Query: 353 -NAMKIVNT-------------TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHI 398
+ M++VN I S N + IP S+ LK L+VLNL N+ I
Sbjct: 639 YHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVI 698
Query: 399 PSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNT 458
P L NL LE+LD+S NK SGQIPQ L L+FL + N S N L G +P G QF +
Sbjct: 699 PRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCS 758
Query: 459 SFDSNSGLCGRPLSKGCESDVA--PANE--DHTKGSEESLFSGTSDWKIILIGYAGGLVA 514
SF N GL G L C A P ++ + +EE++F +W I Y G++
Sbjct: 759 SFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMF----NWVAAAIAYGPGVLC 812
Query: 515 GLVVGFNFSTGIIGWILEKLGTQQKAT 541
GLV+G +++ W EK G +Q
Sbjct: 813 GLVIGHFYTSHNHEWFTEKFGRKQHKA 839
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Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 168/565 (29%), Positives = 256/565 (45%), Gaps = 102/565 (18%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
LQ+L+L N G L +I N SL + ++ + G I ++ L +L L L+ N++
Sbjct: 212 LQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFS 271
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLS-VLTKATSNTTSQKLKYIGLRSCNLT-KFPNFLQ 118
GT+ + + +L + L N S ++ T+ L+ + L+ ++ +FP +L
Sbjct: 272 GTVPFSLFCNT--SLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLT 329
Query: 119 NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178
N L LD+S N G++P + N++ L L +++N LTG + V G L
Sbjct: 330 NILSLKNLDVSGNLFSGEIPPDI--GNLKRLEELKLANNSLTG---EIPVEIKQCGSLDV 384
Query: 179 FDLSSNNLQGPLPVPPPGTIHYLAS-------NNSLTGEIPSWICNLNILESLVLSHNNL 231
D N+L+G +P + Y+ + NS +G +PS + NL LE L L NNL
Sbjct: 385 LDFEGNSLKGQIP----EFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNL 440
Query: 232 SGLLPQCLGNSSDELSVLDLQGNNFFGTIP----------------NTFIKERRIPRSLI 275
+G P L + LS LDL GN F G +P N F E IP S+
Sbjct: 441 NGSFPVEL-MALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGE--IPASVG 497
Query: 276 NCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKL---RI 332
N KL L L +S P L LPN+ V+ L+ N F G++ E GFS L R
Sbjct: 498 NLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPE-----GFSSLVSLRY 552
Query: 333 IDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNN 392
++LS+N F G +P ++F + ++ + +N IP I N L+VL L++N
Sbjct: 553 VNLSSNSFSGEIP-QTFGFLRLLVSLSLS-----DNHISGSIPPEIGNCSALEVLELRSN 606
Query: 393 SLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVE------------------------ 428
L GHIP+ L LP L+ LDL N SG+IP ++ +
Sbjct: 607 RLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSG 666
Query: 429 LTFLEFFNVSDNHLTGLIP------------------------PGKQFATFDNTS-FDSN 463
L+ L ++S N+LTG IP P + +NTS F N
Sbjct: 667 LSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGN 726
Query: 464 SGLCGRPLSKGCESDVAPANEDHTK 488
+ LCG+PL++ CES A + K
Sbjct: 727 TELCGKPLNRRCESSTAEGKKKKRK 751
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1 | Back alignment and function description |
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Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 187/603 (31%), Positives = 284/603 (47%), Gaps = 89/603 (14%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L+ L L NNF+G++ ++ N L+ + ++ N+SGQI SSL +++ L LDL NS+
Sbjct: 103 LKVLSLSNNNFTGNI-NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFS 161
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
GT+ D L + +L +L+LS N L +T S L + L + P+F+
Sbjct: 162 GTLS-DDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCS-VLNSLNLSRNRFSGNPSFVSGI 219
Query: 121 YHL---LVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKG--- 174
+ L LDLS N + G +P +L ++ NL L + N +G LP++ G
Sbjct: 220 WRLERLRALDLSSNSLSGSIPLGIL--SLHNLKELQLQRNQFSG------ALPSDIGLCP 271
Query: 175 DLLTFDLSSNNLQGPLP----------------------VPP-----PGTIHYLASNNSL 207
L DLSSN+ G LP PP G +H S+N L
Sbjct: 272 HLNRVDLSSNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNEL 331
Query: 208 TGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTF--- 264
TG++PS I NL L+ L LS N LSG +P+ L S EL ++ L+GN+F G IP+ F
Sbjct: 332 TGKLPSSISNLRSLKDLNLSENKLSGEVPESL-ESCKELMIVQLKGNDFSGNIPDGFFDL 390
Query: 265 -IKER---------RIPRSLINC-SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI 313
++E IPR L L L +N ++ + P +G ++ L L N
Sbjct: 391 GLQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYLNLSWNH 450
Query: 314 FYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWN-AMKIVNTTGIILSNNSFDS 372
F + P L ++DL N+ IG++P +C + +++I+ G NS
Sbjct: 451 FN--TRVPPEIEFLQNLTVLDLRNSALIGSVPAD--ICESQSLQILQLDG-----NSLTG 501
Query: 373 VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFL 432
IP I N L++L+L +N+L G IP L NL L+ L L NK SG+IP++L +L L
Sbjct: 502 SIPEGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELKILKLEANKLSGEIPKELGDLQNL 561
Query: 433 EFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGCESDVAP---------AN 483
NVS N L G +P G F + D ++ N G+C L C +V N
Sbjct: 562 LLVNVSFNRLIGRLPLGDVFQSLDQSAIQGNLGICSPLLRGPCTLNVPKPLVINPNSYGN 621
Query: 484 EDHTKGSEESLFSGTSDWKIIL-IGYAGGLVAGLVVGFNFSTGIIGWILEKLGTQQKATR 542
++ G+ S SGT ++ L + + A +++ FS II +L A+
Sbjct: 622 GNNMPGNRASGGSGTFHRRMFLSVSVIVAISAAILI---FSGVIIITLL-------NASV 671
Query: 543 RRR 545
RRR
Sbjct: 672 RRR 674
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3 | Back alignment and function description |
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Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 163/534 (30%), Positives = 242/534 (45%), Gaps = 78/534 (14%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQI-TSSLRNLSQLFFLDLAKNSY 59
L FL + N+FSG+L I L LE ++I+ G++ T ++QL LD NS+
Sbjct: 103 LVFLDISSNSFSGELPKEIYELSGLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSF 162
Query: 60 RGTIKLDVL----------------------LTSWKNLEFLALSLNRL-SVLTKATSNTT 96
G++ L + S+ +L+FL+LS N L + +N T
Sbjct: 163 NGSLPLSLTTLTRLEHLDLGGNYFDGEIPRSYGSFLSLKFLSLSGNDLRGRIPNELANIT 222
Query: 97 SQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISH 156
+ Y+G + P +L+ LDL++ ++G +P L N++NL L +
Sbjct: 223 TLVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAEL--GNLKNLEVLFLQT 280
Query: 157 NFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASN---NSLTGEIPS 213
N LTG + N L T DLS+N L+G +P+ G N N L GEIP
Sbjct: 281 NELTGSVPREL---GNMTSLKTLDLSNNFLEGEIPLELSGLQKLQLFNLFFNRLHGEIPE 337
Query: 214 WICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI--- 270
++ L L+ L L HNN +G +P LG S+ L +DL N G IP + RR+
Sbjct: 338 FVSELPDLQILKLWHNNFTGKIPSKLG-SNGNLIEIDLSTNKLTGLIPESLCFGRRLKIL 396
Query: 271 -----------PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
P L C L LG N ++ P L LPNL++L L++N G I
Sbjct: 397 ILFNNFLFGPLPEDLGQCEPLWRFRLGQNFLTSKLPKGLIYLPNLSLLELQNNFLTGEIP 456
Query: 320 EPRT-DCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI 378
E + FS L I+LSNN G +P S +++I ++L N IP I
Sbjct: 457 EEEAGNAQFSSLTQINLSNNRLSGPIP-GSIRNLRSLQI-----LLLGANRLSGQIPGEI 510
Query: 379 ANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVS 438
+LK L +++ N+ G P G+ +L LDLS+N+ SGQIP Q+ ++ L + NVS
Sbjct: 511 GSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDLSHNQISGQIPVQISQIRILNYLNVS 570
Query: 439 ------------------------DNHLTGLIPPGKQFATFDNTSFDSNSGLCG 468
N+ +G +P QF+ F+NTSF N LCG
Sbjct: 571 WNSFNQSLPNELGYMKSLTSADFSHNNFSGSVPTSGQFSYFNNTSFLGNPFLCG 624
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Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 160/510 (31%), Positives = 223/510 (43%), Gaps = 99/510 (19%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
LQ+L L NN G L I LR LE + + + SG+I + N + L +D+ N +
Sbjct: 410 LQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFE 469
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
G I + K L L L N L + P L N
Sbjct: 470 GEIPPSI--GRLKELNLLHLRQNEL------------------------VGGLPASLGNC 503
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVV---LPANKGD-- 175
+ L +LDL+DN++ G +P S FL G +Q ++ L N D
Sbjct: 504 HQLNILDLADNQLSGSIPS---------------SFGFLKGLEQLMLYNNSLQGNLPDSL 548
Query: 176 -----LLTFDLSSNNLQGPLPVPPPGTIHYLA---SNNSLTGEIPSWICNLNILESLVLS 227
L +LS N L G + P G+ YL+ +NN EIP + N L+ L L
Sbjct: 549 ISLRNLTRINLSHNRLNGTIH-PLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLG 607
Query: 228 HNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGN 287
N L+G +P LG ELS+LD+ N GTIP L+ C KL + L N
Sbjct: 608 KNQLTGKIPWTLGKIR-ELSLLDMSSNALTGTIP----------LQLVLCKKLTHIDLNN 656
Query: 288 NQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDC---------------------- 325
N +S P WLG L L L L SN F + +C
Sbjct: 657 NFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIG 716
Query: 326 GFSKLRIIDLSNNIFIGTLPLKSFLCWNAM-KIVNTTGIILSNNSFDSVIPASIANLKGL 384
L +++L N F G+LP AM K+ + LS NS IP I L+ L
Sbjct: 717 NLGALNVLNLDKNQFSGSLP-------QAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDL 769
Query: 385 Q-VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443
Q L+L N+ G IPS +G L LE+LDLS+N+ +G++P + ++ L + NVS N+L
Sbjct: 770 QSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLG 829
Query: 444 GLIPPGKQFATFDNTSFDSNSGLCGRPLSK 473
G + KQF+ + SF N+GLCG PLS+
Sbjct: 830 GKLK--KQFSRWPADSFLGNTGLCGSPLSR 857
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 160/515 (31%), Positives = 243/515 (47%), Gaps = 71/515 (13%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
LQ L L NNFSG L R L + + +G+I S L+ L L+L N
Sbjct: 125 LQNLILNQNNFSGKLPEFSPEFRKLRVLELESNLFTGEIPQSYGRLTALQVLNLNGNPLS 184
Query: 61 GTIKLDV-LLTSWKNLEFLALSLNRLSVLTKA--TSNTTSQKLKYIGLRSCNLTKFPNFL 117
G + + LT L+ +S + + + SN T +L + L + + P+ +
Sbjct: 185 GIVPAFLGYLTELTRLDLAYISFDPSPIPSTLGNLSNLTDLRLTHSNL----VGEIPDSI 240
Query: 118 QNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKG--- 174
N L LDL+ N + G++P+ + ++++ + + N L+G LP + G
Sbjct: 241 MNLVLLENLDLAMNSLTGEIPESI--GRLESVYQIELYDNRLSG------KLPESIGNLT 292
Query: 175 DLLTFDLSSNNLQGPLP--VPPPGTIHYLASNNSLTGEIPSWIC-NLNILESLVLSHNNL 231
+L FD+S NNL G LP + I + ++N TG +P + N N++E + +N+
Sbjct: 293 ELRNFDVSQNNLTGELPEKIAALQLISFNLNDNFFTGGLPDVVALNPNLVEFKIF-NNSF 351
Query: 232 SGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERR--------------IPRSLINC 277
+G LP+ LG S E+S D+ N F G +P R+ IP S +C
Sbjct: 352 TGTLPRNLGKFS-EISEFDVSTNRFSGELPPYLCYRRKLQKIITFSNQLSGEIPESYGDC 410
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLP------------------------NLNVLILRSNI 313
L ++ + +N++S P+ LP +L+ L + +N
Sbjct: 411 HSLNYIRMADNKLSGEVPARFWELPLTRLELANNNQLQGSIPPSISKARHLSQLEISANN 470
Query: 314 FYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV 373
F G+I P C LR+IDLS N F+G++P C N +K N + + N D
Sbjct: 471 FSGVI--PVKLCDLRDLRVIDLSRNSFLGSIPS----CINKLK--NLERVEMQENMLDGE 522
Query: 374 IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433
IP+S+++ L LNL NN L+G IP LG+LP L LDLSNN+ +G+IP +L+ L L
Sbjct: 523 IPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAELLRLK-LN 581
Query: 434 FFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCG 468
FNVSDN L G IP G Q F SF N LC
Sbjct: 582 QFNVSDNKLYGKIPSGFQQDIF-RPSFLGNPNLCA 615
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Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 159/498 (31%), Positives = 232/498 (46%), Gaps = 77/498 (15%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L LYL N +G + +GN+ S+ + +++ ++G I S+L NL L L L +N
Sbjct: 200 LMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLT 259
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK-FPNFLQN 119
G I ++ + +++ LALS N+L+ + +S + L + L LT P L N
Sbjct: 260 GVIPPEI--GNMESMTNLALSQNKLTG-SIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGN 316
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDL--- 176
++ L+LS+N++ G +P L N++NL L + N+LTG V+P G++
Sbjct: 317 IESMIDLELSNNKLTGSIPSSL--GNLKNLTILYLYENYLTG------VIPPELGNMESM 368
Query: 177 LTFDLSSNNLQGPLP----------------------VPPP-----GTIHYLASNNSLTG 209
+ L++N L G +P +P I+ S N LTG
Sbjct: 369 IDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTG 428
Query: 210 EIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERR 269
+P N LESL L N+LSG +P + NSS L+ L L NNF G P T K R+
Sbjct: 429 SVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSS-HLTTLILDTNNFTGFFPETVCKGRK 487
Query: 270 --------------IPRSLINCSKL-EFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF 314
IP+SL +C L LGN D F ++ G P+LN + N F
Sbjct: 488 LQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAF-GIYPDLNFIDFSHNKF 546
Query: 315 YGII-----KEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNS 369
+G I K P KL + +SNN G +P + WN ++V + LS N+
Sbjct: 547 HGEISSNWEKSP-------KLGALIMSNNNITGAIPTE---IWNMTQLVE---LDLSTNN 593
Query: 370 FDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVEL 429
+P +I NL L L L N L G +P+ L L NLESLDLS+N FS +IPQ
Sbjct: 594 LFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSF 653
Query: 430 TFLEFFNVSDNHLTGLIP 447
L N+S N G IP
Sbjct: 654 LKLHDMNLSRNKFDGSIP 671
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 150/502 (29%), Positives = 232/502 (46%), Gaps = 67/502 (13%)
Query: 4 LYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTI 63
LYL N+ G L SI NL +L+ + N+ G++ + L +L + L +N + G +
Sbjct: 390 LYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEM 449
Query: 64 KLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLT-KFPNFLQNQYH 122
+++ + L+ + NRLS ++ + L + LR L P L N +
Sbjct: 450 PVEI--GNCTRLQEIDWYGNRLSGEIPSSIGRL-KDLTRLHLRENELVGNIPASLGNCHQ 506
Query: 123 LLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVV-------LP---AN 172
+ V+DL+DN++ G +P S FLT + ++ LP N
Sbjct: 507 MTVIDLADNQLSGSIPS---------------SFGFLTALELFMIYNNSLQGNLPDSLIN 551
Query: 173 KGDLLTFDLSSNNLQGPLPVPPPGTIHYLA---SNNSLTGEIPSWICNLNILESLVLSHN 229
+L + SSN G + P G+ YL+ + N G+IP + L+ L L N
Sbjct: 552 LKNLTRINFSSNKFNGSIS-PLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKN 610
Query: 230 NLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQ 289
+G +P+ G S ELS+LD+ N+ G IP L C KL + L NN
Sbjct: 611 QFTGRIPRTFGKIS-ELSLLDISRNSLSGIIP----------VELGLCKKLTHIDLNNNY 659
Query: 290 ISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP--LK 347
+S P+WLG LP L L L SN F G + P + + + L N G++P +
Sbjct: 660 LSGVIPTWLGKLPLLGELKLSSNKFVGSL--PTEIFSLTNILTLFLDGNSLNGSIPQEIG 717
Query: 348 SFLCWNAM----------------KIVNTTGIILSNNSFDSVIPASIANLKGLQ-VLNLQ 390
+ NA+ K+ + LS N+ IP I L+ LQ L+L
Sbjct: 718 NLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLS 777
Query: 391 NNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGK 450
N+ G IPS + LP LESLDLS+N+ G++P Q+ ++ L + N+S N+L G + K
Sbjct: 778 YNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK--K 835
Query: 451 QFATFDNTSFDSNSGLCGRPLS 472
QF+ + +F N+GLCG PLS
Sbjct: 836 QFSRWQADAFVGNAGLCGSPLS 857
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 153/489 (31%), Positives = 223/489 (45%), Gaps = 86/489 (17%)
Query: 19 IGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFL 78
I +LRSL+ + ++ N +G+I +S NLS+L FLDL+ N + G I ++
Sbjct: 82 ISDLRSLKHLDLSGNNFNGRIPTSFGNLSELEFLDLSLNRFVGAIPVEF----------- 130
Query: 79 ALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLT------KFPNFLQNQYHLLVLDLSDNR 132
KL+ GLR+ N++ + P+ L+ L +S N
Sbjct: 131 -------------------GKLR--GLRAFNISNNLLVGEIPDELKVLERLEEFQVSGNG 169
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLV-VLPANKG---DLLTFDLSSNNLQG 188
+ G +P W + NL++L + T ++ LV +P G +L +L SN L+G
Sbjct: 170 LNGSIPHW-----VGNLSSLRV----FTAYENDLVGEIPNGLGLVSELELLNLHSNQLEG 220
Query: 189 PLP--VPPPGTIHYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDE 245
+P + G + L + N LTGE+P + + L S+ + +N L G++P+ +GN S
Sbjct: 221 KIPKGIFEKGKLKVLVLTQNRLTGELPEAVGICSGLSSIRIGNNELVGVIPRTIGNISG- 279
Query: 246 LSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305
L+ + NN G I F K CS L L L N + T P+ LG L NL
Sbjct: 280 LTYFEADKNNLSGEIVAEFSK----------CSNLTLLNLAANGFAGTIPTELGQLINLQ 329
Query: 306 VLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLK-------SFLCWNAMKI- 357
LIL N +G I P++ G L +DLSNN GT+P + +L + I
Sbjct: 330 ELILSGNSLFGEI--PKSFLGSGNLNKLDLSNNRLNGTIPKELCSMPRLQYLLLDQNSIR 387
Query: 358 ----------VNTTGIILSNNSFDSVIPASIANLKGLQV-LNLQNNSLQGHIPSCLGNLP 406
V + L N IP I ++ LQ+ LNL N L G +P LG L
Sbjct: 388 GDIPHEIGNCVKLLQLQLGRNYLTGTIPPEIGRMRNLQIALNLSFNHLHGSLPPELGKLD 447
Query: 407 NLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGL 466
L SLD+SNN +G IP L + L N S+N L G +P F N+SF N L
Sbjct: 448 KLVSLDVSNNLLTGSIPPLLKGMMSLIEVNFSNNLLNGPVPVFVPFQKSPNSSFLGNKEL 507
Query: 467 CGRPLSKGC 475
CG PLS C
Sbjct: 508 CGAPLSSSC 516
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 0 EC: . EC: 1 |
| >sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 178/571 (31%), Positives = 253/571 (44%), Gaps = 100/571 (17%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
LQ L L N SG +LG + L+ +++++I+ ++SG++ S + L L+++ N +
Sbjct: 114 LQVLDLSHNLLSGSVLGVVSGLKLIQSLNISSNSLSGKL-SDVGVFPGLVMLNVSNNLFE 172
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLT-KFPNFLQN 119
G I + L +S ++ L LS+NRL N S+ ++ + + S LT + P++L +
Sbjct: 173 GEIHPE-LCSSSGGIQVLDLSMNRLVGNLDGLYNC-SKSIQQLHIDSNRLTGQLPDYLYS 230
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
L L LS N + G++ K L N+ L +L IS N + V+P G+L
Sbjct: 231 IRELEQLSLSGNYLSGELSKNL--SNLSGLKSLLISENRFSD------VIPDVFGNLTQL 282
Query: 180 ---DLSSNNLQGPLPVPPPGTIHYLA----SNNSLTGEIPSWICNLNILESLVLSHNNLS 232
D+SSN G P P L NNSL+G I L L L+ N+ S
Sbjct: 283 EHLDVSSNKFSGRFP-PSLSQCSKLRVLDLRNNSLSGSINLNFTGFTDLCVLDLASNHFS 341
Query: 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTF---------------------------- 264
G LP LG+ ++ +L L N F G IP+TF
Sbjct: 342 GPLPDSLGHCP-KMKILSLAKNEFRGKIPDTFKNLQSLLFLSLSNNSFVDFSETMNVLQH 400
Query: 265 -------------IKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRS 311
I E IP ++ L L LGN + PSWL L VL L
Sbjct: 401 CRNLSTLILSKNFIGEE-IPNNVTGFDNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSW 459
Query: 312 NIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP-----LKSFLCWN--AMKIVNTTGI- 363
N FYG I P L ID SNN G +P LK+ + N A ++ +++GI
Sbjct: 460 NHFYGTI--PHWIGKMESLFYIDFSNNTLTGAIPVAITELKNLIRLNGTASQMTDSSGIP 517
Query: 364 ------------------------ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIP 399
L+NN + I I LK L +L+L N+ G IP
Sbjct: 518 LYVKRNKSSNGLPYNQVSRFPPSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIP 577
Query: 400 SCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTS 459
+ L NLE LDLS N G IP LTFL F+V+ N LTG IP G QF +F ++S
Sbjct: 578 DSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSS 637
Query: 460 FDSNSGLCGRPLSKGCESDVAPANEDHTKGS 490
F+ N GLC R + C DV +N + KGS
Sbjct: 638 FEGNLGLC-RAIDSPC--DVLMSNMLNPKGS 665
|
Phytosulfokine receptor with a serine/threonine-protein kinase activity. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| 359485824 | 973 | PREDICTED: receptor-like protein 12-like | 0.978 | 0.551 | 0.469 | 1e-132 | |
| 359490156 | 886 | PREDICTED: receptor-like protein 12-like | 0.987 | 0.611 | 0.443 | 1e-124 | |
| 147794486 | 1924 | hypothetical protein VITISV_000631 [Viti | 0.916 | 0.261 | 0.456 | 1e-119 | |
| 147804670 | 1004 | hypothetical protein VITISV_022039 [Viti | 0.983 | 0.537 | 0.425 | 1e-118 | |
| 224140511 | 894 | predicted protein [Populus trichocarpa] | 0.987 | 0.606 | 0.426 | 1e-118 | |
| 225447578 | 1946 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.275 | 0.448 | 1e-117 | |
| 224140505 | 993 | predicted protein [Populus trichocarpa] | 0.983 | 0.543 | 0.422 | 1e-115 | |
| 359485822 | 993 | PREDICTED: receptor-like protein 12-like | 0.983 | 0.543 | 0.448 | 1e-115 | |
| 147766212 | 925 | hypothetical protein VITISV_018438 [Viti | 0.936 | 0.555 | 0.436 | 1e-114 | |
| 224140517 | 979 | predicted protein [Populus trichocarpa] | 0.965 | 0.541 | 0.413 | 1e-113 |
| >gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 287/611 (46%), Positives = 358/611 (58%), Gaps = 74/611 (12%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L +LYL N G++ S+ N+ L + ++ +SGQI SSL L L L L N
Sbjct: 369 LTYLYLNQINLIGEIPFSLVNMSQLNILSLSDNQLSGQIPSSLFELVNLQGLYLLSNYLN 428
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
GT++L LL+ KNL +L LS NRLS L+ +N T K K++GL SCNLT+FP+FLQNQ
Sbjct: 429 GTVELQ-LLSKLKNLIYLQLSDNRLSFLSYTRTNATLPKFKHLGLGSCNLTEFPDFLQNQ 487
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
+ L ++ LS+N+I G +PKW+ + + + L L +S NFLTGFDQ VLP +K L T
Sbjct: 488 HELEIITLSENKIHGPIPKWVWNISKETLVTLELSENFLTGFDQRPFVLPWSK--LHTLR 545
Query: 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240
L SN LQGPLPVPPP T+ YL S N LTGEI ICN+ LE L LS NNLSG +PQCL
Sbjct: 546 LDSNMLQGPLPVPPPSTVEYLVSGNKLTGEISPLICNMTSLELLDLSSNNLSGRIPQCLA 605
Query: 241 NSSDELSVLDLQGNNFFGTIP----------------NTFIKERRIPRSLINCSKLEFLG 284
N S L VLDL N+ G IP N F + +IPRSL+NC+ LE L
Sbjct: 606 NFSRSLFVLDLGSNSLDGPIPEICTVSHNLNVIDLGDNQF--QGQIPRSLVNCTMLEHLV 663
Query: 285 LGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTL 344
LGNN+I+D FP WLG LP L VLILRSN F+G I T+ F KLRIIDLS+N FIG L
Sbjct: 664 LGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKLRIIDLSDNEFIGDL 723
Query: 345 PLKSFLCWNAMKIVNTT------------------------------------------- 361
P + F W+AMK+ +
Sbjct: 724 PSEYFQNWDAMKLTDIASGLRYMQISPMIDLKNNVMITGYMYSMTMTNKGMQRFYERILD 783
Query: 362 ---GIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
I S N+F IP SI +LKG+ +LNL N L GHIPS LGNL LESLDLS NK
Sbjct: 784 TFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLGGNDLTGHIPSSLGNLTQLESLDLSQNKL 843
Query: 419 SGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGCESD 478
SG+IP QL LTFLEFFNVS NHLTG IP GKQFATF+N SFD N GLCG PLS+ C S
Sbjct: 844 SGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGKQFATFENASFDGNLGLCGSPLSRECGSS 903
Query: 479 VA--PANEDHTKGSEESLFSGTSDWKIILIGYAGGLVAGLVVGFNFSTGIIGWILEKLGT 536
A P + +GS DWKI+L+GY GL+ G+ +G+ ++ W ++ +G
Sbjct: 904 EALPPTSSSSKQGSTTKF-----DWKIVLMGYGSGLLIGVSIGYCLTSWKHEWFVKTIGK 958
Query: 537 QQKATRRRRRR 547
+Q+ R+ R
Sbjct: 959 RQRKWTRKEGR 969
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 284/641 (44%), Positives = 361/641 (56%), Gaps = 99/641 (15%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L+ LYL +FSG+L SIG L SL + I+ CN +G + S L +LSQL +LDL+ N +
Sbjct: 250 LKLLYLSGTSFSGELPTSIGRLGSLTKLDISSCNFTGLVPSPLGHLSQLSYLDLSNNFFS 309
Query: 61 GTIK-----------LDVLLTSWK-----------NLEFLALS---------LNRLSVLT 89
G I LD+ L + + NL++L+++ LNRLS+L
Sbjct: 310 GQIPSSMANLTRLTFLDLSLNNLEGGIPTSLFELVNLQYLSVADNSLNGTVELNRLSLLG 369
Query: 90 KATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL 149
+N T K K +GL SCNLT+FP+FLQNQ L VL LSDN+I G +PKW+ + + +NL
Sbjct: 370 YTRTNVTLPKFKLLGLDSCNLTEFPDFLQNQDELEVLFLSDNKIHGPIPKWMWNISQENL 429
Query: 150 NALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA-SNNSLT 208
+L++S N LTGF+QH VVLP +K +L D SN LQGPLP+PPP TI Y + S N L
Sbjct: 430 ESLDLSGNLLTGFNQHPVVLPWSKLSILELD--SNMLQGPLPIPPPSTIEYYSVSRNKLI 487
Query: 209 GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK-- 266
GEI ICN++ L L LS NNLSG +PQCL N S L +LDL NN G IP T
Sbjct: 488 GEISPLICNMSSLILLDLSSNNLSGRIPQCLANLSKSLFILDLGSNNLDGPIPQTCTVPN 547
Query: 267 ------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF 314
+ +IPRS NC LE L LGNNQI D FP WLG LP L VLILRSN F
Sbjct: 548 NLRVIDLGENQFQGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRF 607
Query: 315 YGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTT------------- 361
+G I ++ F KLRI+DLS+N FIG LP + F W+AMK+ +
Sbjct: 608 HGAIGSWHSNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTDIANDLRYMQARPKFQ 667
Query: 362 ---------------------------------GIILSNNSFDSVIPASIANLKGLQVLN 388
I S N+F IP SI NL G +LN
Sbjct: 668 IPGYGWTAHYMYSMTMTNRGMQRFYEKIPDVFIAIDFSGNNFKGQIPTSIGNLNGFHLLN 727
Query: 389 LQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448
L +N+L GHIPS LG+L LESLDLS N+ SG+IP QL +TFL FFNVS NHLTG IP
Sbjct: 728 LGSNNLTGHIPSSLGDLTQLESLDLSQNQLSGEIPLQLTRITFLAFFNVSHNHLTGPIPQ 787
Query: 449 GKQFATFDNTSFDSNSGLCGRPLSKGC-ESDVAPANEDHTKGSEESLFSGTSDWKIILIG 507
G QF TF N SFD N GLCG PLS+ C S+ +P +K S F DWK +L+G
Sbjct: 788 GNQFTTFPNASFDGNLGLCGSPLSRACGSSEASPPTSSSSKQGSTSEF----DWKFVLMG 843
Query: 508 YAGGLVAGLVVGFNFSTGIIGWILEKLGTQQKATRRRRRRR 548
Y GLV G+ +G+ ++ W ++ G +Q+ R+ RR
Sbjct: 844 YGSGLVIGVSIGYYLTSWKHEWFVKTFGKRQRKWTRKERRH 884
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/567 (45%), Positives = 331/567 (58%), Gaps = 64/567 (11%)
Query: 34 NVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATS 93
N+ G I SS+ L L L L N GT++L+ +L KNL L LS N LS+LT +
Sbjct: 1359 NLEGPIPSSIFELMNLDTLFLRANKLSGTVELN-MLVKLKNLHXLGLSHNDLSLLTNNSL 1417
Query: 94 NTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALN 153
N + +L+ +GL SCNL++FP+FL+NQ L L LSDN+I G++PKW+ + + L ++
Sbjct: 1418 NGSLPRLRLLGLASCNLSEFPHFLRNQDELKFLTLSDNKIHGQIPKWMWNMGKETLWVMD 1477
Query: 154 ISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPS 213
+S+N LT F+Q VVLP L +LS N LQG LPVPP Y NN L G+ PS
Sbjct: 1478 LSNNLLTXFEQAPVVLPWIT--LRVLELSYNQLQGSLPVPPXSISDYFVHNNRLNGKXPS 1535
Query: 214 WICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERR---- 269
IC+L+ L L LS+NNLSG++PQCL +SSD LSVL+L+GNNF G+IP TF + R
Sbjct: 1536 LICSLHHLHILDLSNNNLSGMIPQCLXDSSDSLSVLNLRGNNFHGSIPQTFTSQCRLKMI 1595
Query: 270 ----------IPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
IPRSL NC + E L LGNNQI+DTFP WLG+LP L +LILR N F+G I+
Sbjct: 1596 DFSYNQLEGQIPRSLXNCKEXEILNLGNNQINDTFPFWLGSLPELQLLILRHNRFHGAIE 1655
Query: 320 EPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT---------TGII------ 364
PR + F L IIDLS N F G LP FL W AM V+ TG +
Sbjct: 1656 SPRANFEFPTLCIIDLSYNXFAGNLPAGYFLTWVAMSRVDEEHFSYMQSMTGFVLIRTYR 1715
Query: 365 -------------------------------LSNNSFDSVIPASIANLKGLQVLNLQNNS 393
LS+N F IP SI L+GL +LN+ +NS
Sbjct: 1716 LYENYNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNS 1775
Query: 394 LQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFA 453
L GHIPS LGNL LE+LDLS N SG+IPQQL +TFLEFFNVS NHL G IP GKQF
Sbjct: 1776 LTGHIPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFN 1835
Query: 454 TFDNTSFDSNSGLCGRPLSKGCESDVAPANEDHTKGSEESLFSGTS-DWKIILIGYAGGL 512
TF N S++ N GLCG PLSK C + + A+ T L SG + I+L+GY GL
Sbjct: 1836 TFQNDSYEGNPGLCGNPLSKECGNSKSTASSPPTYKHGGDLESGRKVELMIVLMGYGSGL 1895
Query: 513 VAGLVVGFNFSTGIIGWILEKLGTQQK 539
V G+ +G+ +T W ++ G +Q+
Sbjct: 1896 VVGMAIGYTLTTRKHEWFVKTFGKRQR 1922
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 273/641 (42%), Positives = 344/641 (53%), Gaps = 101/641 (15%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L +LYL N +G++ S+ N+ L + +++ + GQI S L NL+QL L L +N
Sbjct: 369 LTYLYLDQMNLTGEIPSSLVNMSELTILSLSRNQLIGQIPSWLMNLTQLTELYLEENKLE 428
Query: 61 GTIKLDV-----------------------LLTSWKNLEFLALSLNRLSVLTKATSNTTS 97
G I + +L+ KNL L LS NRLS+L+ +N T
Sbjct: 429 GPIPSSLFELVNLQSLYLHSNYLTGTVELHMLSKLKNLTGLLLSGNRLSLLSYTRTNATL 488
Query: 98 QKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHN 157
K +GL SCNLT+FP+FLQNQ L+VL LSDN+I G +PKW+ + + + L AL +S N
Sbjct: 489 PTFKLLGLGSCNLTEFPDFLQNQDELVVLSLSDNKIHGPIPKWVWNISKETLEALRLSGN 548
Query: 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICN 217
FLTGFDQ VVLP ++ L + L N LQGPLP+PPP TI Y N LTGEI ICN
Sbjct: 549 FLTGFDQRPVVLPWSR--LYSLQLDFNMLQGPLPIPPPSTILYSVYGNKLTGEISPLICN 606
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKER--------- 268
++ L+ L L+ NNLSG +PQCL N S LSVLDL N+ G IP T
Sbjct: 607 MSSLKLLDLARNNLSGRIPQCLANFSKSLSVLDLGSNSLDGPIPQTCTVPNNLRVIDLGE 666
Query: 269 -----RIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRT 323
+IPRS NC LE L LGNNQI D FP WLG LP L VLILRSN F+G I T
Sbjct: 667 NQFRGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWHT 726
Query: 324 DCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIV------------------------- 358
+ F KL IIDLS N F G LP + F +AM+I+
Sbjct: 727 NFRFPKLHIIDLSYNEFTGNLPSEYFQNLDAMRILDGGQLGYKKANVVQLPIVLRTKYMM 786
Query: 359 ----------------------------NTTGIILSNNSFDSVIPASIANLKGLQVLNLQ 390
N I LS+N FD IP SI L GL LNL
Sbjct: 787 GDMVGPRNDTHIKMMIKGMRREYKNIPYNLMNIDLSSNKFDGEIPESIGGLVGLYSLNLS 846
Query: 391 NNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGK 450
NN+L G I + L NL LE+LDLS NK G+IPQQL +LTFL F+VS NHLTG IP GK
Sbjct: 847 NNALTGPILTSLANLTQLEALDLSQNKLLGEIPQQLTQLTFLAVFSVSHNHLTGPIPQGK 906
Query: 451 QFATFDNTSFDSNSGLCGRPLSKGCES----DVAPANEDHTKGSEESLFSGTSDWKIILI 506
QF TF N+SFD N GLCG PLS+ C S + P GS DWKI+L+
Sbjct: 907 QFNTFSNSSFDGNPGLCGSPLSRVCGSSKGWSLTPPPSTFGNGSPSDF-----DWKIVLM 961
Query: 507 GYAGGLVAGLVVGFNFSTGIIGWILEKLGTQQKATRRRRRR 547
GY G+V G+ +G+ + W ++ G QQ+ R++ ++
Sbjct: 962 GYGSGIVMGVSIGYCLTVWKHEWFVKTFGRQQRKLRKKEQK 1002
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 269/631 (42%), Positives = 350/631 (55%), Gaps = 89/631 (14%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L+ L L NFSG L S+GNL+SL+ H+AKC SG + SSL NL+QLF L L+ N
Sbjct: 268 LETLMLTGTNFSGQLPESLGNLKSLKEFHVAKCYFSGVVPSSLGNLTQLFALFLSDNKLH 327
Query: 61 GTIKLDVLLTSWKNLEFLALS---------LNRLSVL-------------TKATSNTTSQ 98
G I + +NLE L LS LNR L T +
Sbjct: 328 GAIPESIY--RLQNLEILDLSNNFFSGSLELNRFRNLASLLLSYNNLSLLTGHNATFPLP 385
Query: 99 KLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF 158
KL+ + L CNL + P+FL++Q L +L++ DN+++G +PKW ++ + L AL+++ N
Sbjct: 386 KLQLLKLEGCNLGELPSFLRDQNQLEILEIGDNKLEGHIPKWFMNVSTITLEALSLAGNL 445
Query: 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNL 218
LTGF+Q VLP N +L + L+SN QG LP+PPP Y SNN L GEIP ICNL
Sbjct: 446 LTGFEQSFDVLPWN--NLRSLSLNSNKFQGSLPIPPPAIYEYQVSNNKLNGEIPEVICNL 503
Query: 219 NILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK------------ 266
L L LS+NNLSG LP CLGN S SVL+L+ N+F G IP TF
Sbjct: 504 TSLSVLDLSNNNLSGKLPPCLGNKSSTASVLNLRNNSFSGDIPETFTSGCSLRVVDLSQN 563
Query: 267 --ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324
E +IP+SL NC++LE L L N I+D FPSWLG LP+L VLI RSN +G+I +P T+
Sbjct: 564 KLEGKIPKSLANCAELEILNLEQNNINDVFPSWLGMLPDLKVLIFRSNGLHGVIGKPETN 623
Query: 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT------------------------ 360
F +L+I+DLSNN F G LPL+ F W AMK V+
Sbjct: 624 VDFPRLQIVDLSNNSFKGKLPLEYFRNWTAMKNVHNEPLIYMQADTSIDISRASVTNPYP 683
Query: 361 ---------------------TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIP 399
+ I LS+N F+ IP + +LK L +LNL NN L G IP
Sbjct: 684 YSMTMTNKGVMTLYEKIQDSLSAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGRIP 743
Query: 400 SCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTS 459
L NL LE+LDLS+NK SG+IP QL +LTFLE FNVS N L+G IP G QF FD+TS
Sbjct: 744 PSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLEIFNVSHNFLSGPIPRGNQFGAFDSTS 803
Query: 460 FDSNSGLCGRPLSKGCESDVAPANEDHTKGSEESLFSGTSDWKIILIGYAGGLVAGLVVG 519
FD+NSGLCG PLSK C +DV P G S + WK+++IGYA GL+ G+++G
Sbjct: 804 FDANSGLCGEPLSKKCGNDVDPLPAPEEDGG--SGYPLEFGWKVVVIGYATGLLIGVILG 861
Query: 520 FNFSTGIIGWILEKLGT--QQKATRRRRRRR 548
+T W+++ Q K + R R
Sbjct: 862 CVMNTRKYEWVVKNYFARWQNKGQHLKNRLR 892
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/600 (44%), Positives = 348/600 (58%), Gaps = 64/600 (10%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L +L L N +G + +GNL L+ + + N+ G I SS+ L L L L N
Sbjct: 1348 LTYLNLEYNQLTGRIPPCLGNLTLLKTLGLGYNNLEGPIPSSIFELMNLDTLILRANKLS 1407
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
GT++L++L+ KNL L LS N LS+LT + N + +L+ +GL SCNL++FP+FL+NQ
Sbjct: 1408 GTVELNMLV-KLKNLHKLGLSHNDLSLLTNNSLNGSLPRLRLLGLASCNLSEFPHFLRNQ 1466
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
L L LSDN+I G++PKW+ + + L +++S+N LT F+Q VVLP L +
Sbjct: 1467 DELKFLTLSDNKIHGQIPKWMWNMGKETLWVMDLSNNLLTCFEQAPVVLPWIT--LRVLE 1524
Query: 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240
LS N LQG LPVPP Y NN L G+ PS IC+L+ L L LS+NNLSG++PQCL
Sbjct: 1525 LSYNQLQGSLPVPPSSISDYFVHNNRLNGKFPSLICSLHHLHILDLSNNNLSGMIPQCLS 1584
Query: 241 NSSDELSVLDLQGNNFFGTIPNTFIKERR--------------IPRSLINCSKLEFLGLG 286
+SSD LSVL+L+GNNF G+IP TF + R IPRSL NC +LE L LG
Sbjct: 1585 DSSDSLSVLNLRGNNFHGSIPQTFTSQCRLKMIDFSYNQLEGQIPRSLGNCKELEILNLG 1644
Query: 287 NNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPL 346
NNQI+DTFP WLG+ P L +LILR N F+G I+ PR + F L IIDLS N F G LP
Sbjct: 1645 NNQINDTFPFWLGSFPELQLLILRHNRFHGAIENPRANFEFPTLCIIDLSYNNFAGNLPA 1704
Query: 347 KSFLCWNAMKIVNT---------TGII--------------------------------- 364
FL W AM V+ TG +
Sbjct: 1705 GYFLTWVAMSRVDEENFSYMQSMTGFVLIRTYRLYENYNYSMTMTNKGMERVYPKIPRSF 1764
Query: 365 ----LSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420
LS+N F IP SI L+GL +LN+ +NSL GHIPS LGNL LE+LDLS N SG
Sbjct: 1765 KAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLTGHIPSFLGNLAQLEALDLSQNNLSG 1824
Query: 421 QIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGCESDVA 480
+IPQQL +TFLEFFNVS NHL G IP GKQF TF N S++ N GLCG PLSK CE+ +
Sbjct: 1825 EIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTFQNDSYEGNPGLCGNPLSKECENSKS 1884
Query: 481 PANEDHTKGSEESLFSGTS-DWKIILIGYAGGLVAGLVVGFNFSTGIIGWILEKLGTQQK 539
A T L SG + I+L+GY GLV G+ +G+ +T W ++ G +Q+
Sbjct: 1885 TAPPPPTDKHGGDLESGRKVELMIVLMGYGSGLVVGMAIGYTLTTRKHEWFVKTFGKRQR 1944
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 258/610 (42%), Positives = 344/610 (56%), Gaps = 70/610 (11%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L FL L N +G + IGN L + + + G I S+ L L L+L N +
Sbjct: 388 LTFLALNENKLTGQIPSWIGNHTQLILLGLGANKLHGPIPESIYRLQNLGVLNLEHNLFS 447
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
GT++L+ L ++NL L LS N LS+L + KLK + L CNL +FP+FL++Q
Sbjct: 448 GTLELNFPL-KFRNLFSLQLSYNNLSLLKSNNTIIPLPKLKILTLSGCNLGEFPSFLRDQ 506
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
HL +LDL+DN+++G++PKW ++ + L L ++ N LTGFDQ VLP N +L +
Sbjct: 507 NHLGILDLADNKLEGRIPKWFMNMSTTTLEDLYLARNLLTGFDQSFDVLPWN--NLRSLQ 564
Query: 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240
L SN LQG LP+PPP Y NN LTGEIP ICNL L L LS+NNLSG L CLG
Sbjct: 565 LHSNKLQGSLPIPPPEIYAYGVQNNKLTGEIPIVICNLISLSVLDLSNNNLSGKLTHCLG 624
Query: 241 NSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLG 286
N S SVL+L N+F G IP+TF E +IP+SL NC+KLE L L
Sbjct: 625 NISSTASVLNLHNNSFSGDIPDTFTSGCSLKVIDFSENKLEWKIPKSLANCTKLEILNLE 684
Query: 287 NNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPL 346
N+I+D FPSWLG LP+L VLILRSN +G+I +P T+ F +L+I+DLSNN F G LPL
Sbjct: 685 QNKINDVFPSWLGMLPDLRVLILRSNGLHGVIGKPETNVEFRRLQIVDLSNNSFKGKLPL 744
Query: 347 KSFLCWNAMKIVNTTGII------------------------------------------ 364
+ W AMK V +I
Sbjct: 745 EYLRNWTAMKNVRNEHLIYMQVGISYQIFGDSMTIPYQFSMTITNKGVMRLYEKIQDSLS 804
Query: 365 ---LSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQ 421
LS+N F+ IP + +LK L +LNL NN L G IP L NL LE+LDLS NK SG+
Sbjct: 805 AIDLSSNGFEGGIPEVLGDLKELHLLNLSNNFLSGGIPPSLSNLKELEALDLSQNKLSGE 864
Query: 422 IPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGCESDVAP 481
IP +L +LTFLE FNVS N L+G IP G QF TF+NTSFD+N GLCG PLSK C +D
Sbjct: 865 IPVKLAQLTFLEVFNVSHNFLSGPIPRGNQFGTFENTSFDANPGLCGEPLSKECGND--- 921
Query: 482 ANEDHTKGSEESLFSGTS---DWKIILIGYAGGLVAGLVVGFNFSTGIIGWILEKLGTQQ 538
ED ++E SG WK++++GYA G+V G+++G +T W+++ ++
Sbjct: 922 --EDSLPAAKEDEGSGYPLEFGWKVVVVGYASGVVNGVIIGCVMNTRKYEWVVKNYFARR 979
Query: 539 KATRRRRRRR 548
+ + + R
Sbjct: 980 QNKGQNLKTR 989
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 272/607 (44%), Positives = 345/607 (56%), Gaps = 67/607 (11%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L L L N G + + NL L +++ + + G I SSL L L +L L N
Sbjct: 390 LTILNLSKNQLIGQIPSWLMNLTQLTELYLQENKLEGPIPSSLFELVNLQYLYLHSNYLT 449
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
GT++L +L++ KNL L LS NR+S+L+ ++N T K K +GL SCNLT+FP+FLQNQ
Sbjct: 450 GTVELH-MLSNLKNLTDLQLSYNRISLLSYTSTNATLPKFKLLGLASCNLTEFPDFLQNQ 508
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
L VL LS N+I G +PKW+ + + + L AL +S+NFL+GF Q VLP ++ +L +
Sbjct: 509 QELEVLILSTNKIHGPIPKWMWNISKETLEALFLSNNFLSGFSQVPDVLPWSRMSIL--E 566
Query: 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240
LSSN LQG LPVPP T+ Y S N L GEIPS ICNL L L LS NNLSG +PQC
Sbjct: 567 LSSNMLQGSLPVPPSSTVEYSVSRNRLAGEIPSLICNLTSLSLLDLSGNNLSGSIPQCFT 626
Query: 241 NSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLG 286
S LS+L+L+ NN G IP T + +IP+SL +C LE L LG
Sbjct: 627 KLSSSLSILNLRRNNLNGPIPQTCTNTSNLRMIDLSENQLQGQIPKSLASCMMLEELVLG 686
Query: 287 NNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPL 346
NN I+D FP WLG+LP L VLILR N F+G I P+T+ FSKLRIIDLS N F G LP
Sbjct: 687 NNLINDIFPFWLGSLPRLQVLILRFNRFHGAIGSPKTNFEFSKLRIIDLSYNGFTGNLPS 746
Query: 347 KSFLCWNAMKIVNTT--------------------------------------------- 361
+ W+AM+IV+
Sbjct: 747 EYLKNWDAMRIVDAENLTYIQVDEEFEVPQYSWEEPYPFSTTMTNKGMTREYELIPDILI 806
Query: 362 GIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQ 421
I LS+N F IP SI N GL+ LNL NN+L G IP+ L NL LE+LDLS NK S +
Sbjct: 807 AIDLSSNRFHGEIPESIGNPNGLRWLNLSNNALIGAIPTSLANLTLLEALDLSQNKLSRE 866
Query: 422 IPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGC-ESDVA 480
IPQQLV+LTFL FFNVS NHLTG IP GKQFATF SFD N GLCG PLS+ C S+ +
Sbjct: 867 IPQQLVQLTFLAFFNVSHNHLTGPIPQGKQFATFSRASFDGNPGLCGSPLSRACGSSEQS 926
Query: 481 PANEDHTKGSEESLFSGTSDWKIILIGYAGGLVAGLVVGFNFSTGIIGWILEKLGTQQKA 540
P +K S F DWK +L+G GLV G+ +G+ ++ W ++ G Q
Sbjct: 927 PPTPSSSKQGSTSEF----DWKFVLMGCGSGLVIGVSIGYCLTSWKHEWFVKTFGKQHTK 982
Query: 541 TRRRRRR 547
R+ RR
Sbjct: 983 WTRKERR 989
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147766212|emb|CAN63381.1| hypothetical protein VITISV_018438 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 274/628 (43%), Positives = 331/628 (52%), Gaps = 114/628 (18%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L FL L NNFS L +G L A+H+ + N+ G+I SL N+SQL L LA N
Sbjct: 300 LTFLVLSFNNFSIGTLAWLGEQTKLTALHLRQINLIGEIPFSLVNMSQLTTLTLADNQLS 359
Query: 61 GTI--------KLDVLLTSWKNLE------------------------------------ 76
G I +L VL NLE
Sbjct: 360 GQIPSWLMNLTQLTVLDLGANNLEGGIPSSLFELVNLQSLSVGGNSLNGTVELNMLLKLK 419
Query: 77 ---FLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRI 133
LS NRLS+L +N T K K +GL SCNLT+FP+FL+NQ L VL L++N+I
Sbjct: 420 NLTSFQLSGNRLSLLGYTRTNVTLPKFKLLGLDSCNLTEFPDFLRNQDELAVLSLANNKI 479
Query: 134 QGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP 193
G +PKW+ + + +NL L++S N LT FD H VVLP ++ +L D SN LQGPLP+P
Sbjct: 480 HGLIPKWIWNISQENLGTLDLSXNLLTXFDXHPVVLPWSRLSILMLD--SNMLQGPLPIP 537
Query: 194 PPGTIHYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQ 252
PP T Y + S N L GEI ICN++ L L LS NNLSG +PQCL N S LSVLDL
Sbjct: 538 PPSTXEYYSVSRNKLIGEISPLICNMSSLMILDLSSNNLSGRIPQCLANLSKSLSVLDLG 597
Query: 253 GNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWL 298
N+ G IP T + +IPRS NC LE L LGNNQI D FP WL
Sbjct: 598 SNSLDGPIPQTCTVTNNLRVIDLGENQFQGQIPRSFANCMMLEHLVLGNNQIBDIFPFWL 657
Query: 299 GTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIV 358
G LP L VLILRSN F+G I + F KLRI+DLS+N FIG LP + F W+AMK+
Sbjct: 658 GALPQLQVLILRSNXFHGAIGSWHXNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLT 717
Query: 359 NTT----------------------------------------------GIILSNNSFDS 372
+ I S N+F
Sbjct: 718 DIANDLRYMQARXEFXBLGYTWTGHYLYSLTMXNKGMQRFYEKIPDIFIAIDFSGNNFKG 777
Query: 373 VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFL 432
IP S NLKGL +LNL +N+L GHIPS LGNLP LESLDLS N+ SG+IP QL +TFL
Sbjct: 778 QIPISTGNLKGLHLLNLGDNNLTGHIPSSLGNLPRLESLDLSQNQLSGEIPLQLTRITFL 837
Query: 433 EFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGCESDVAPANEDHTKGSEE 492
FFNVS NHLTG IP G QF TF N SFD N GLCG LS+ C S A +K
Sbjct: 838 AFFNVSHNHLTGTIPQGNQFTTFPNASFDGNPGLCGSTLSRACGSFEASPPSSSSKQGST 897
Query: 493 SLFSGTSDWKIILIGYAGGLVAGLVVGF 520
S F DWK +L+GY GLV G+ +G+
Sbjct: 898 SEF----DWKFVLMGYGSGLVIGVSIGY 921
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 268/648 (41%), Positives = 342/648 (52%), Gaps = 118/648 (18%)
Query: 4 LYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTI 63
L L NNF D L +GNL +L + + + N G I SSLRNL+QL L L N G I
Sbjct: 343 LSLSSNNFRSDTLDWLGNLTNLNYVDLTQTNSYGNIPSSLRNLTQLTVLRLHGNKLTGQI 402
Query: 64 K----------------------LDVLLTSWKNLEFLALS---------LNRL------- 85
+ + + +NLE L LS LNR
Sbjct: 403 QSWIGNHTQLISLYLGFNKLHGPIPESIYRLQNLEELDLSNNFFSGSLELNRFRNLNSLL 462
Query: 86 ------SVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPK 139
S+LT + KL+ + L CN+ + P FL++Q L +L++ DN+++G +PK
Sbjct: 463 LSYNNLSLLTSHNATFPLPKLQLLSLEGCNIGELPGFLRDQNQLEILEIGDNKLEGHIPK 522
Query: 140 WLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIH 199
W ++ + L AL+++ N LTGF+Q VLP N +L + L+SN QG LP+PPP
Sbjct: 523 WFMNMSTITLEALSLAGNLLTGFEQSFDVLPWN--NLRSLSLNSNKFQGSLPIPPPAIFE 580
Query: 200 YLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259
Y SNN L GEIP ICNL L L LS NNLSG LPQCLGN S SVL+L N+F G
Sbjct: 581 YKVSNNKLNGEIPEVICNLTSLFVLDLSINNLSGKLPQCLGNKSSTASVLNLHNNSFSGD 640
Query: 260 IPNTFIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305
IP TF E +IP+SL NC++LE L L N I+D FPSWLG LP+L
Sbjct: 641 IPETFTSGCSLRVVDFSQNKLEGKIPKSLANCTELEILNLEQNNINDVFPSWLGVLPDLR 700
Query: 306 VLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT----- 360
V+ILRSN +G+I +P T+ F +L+I+DLSNN F G LPL+ F W AMK V
Sbjct: 701 VMILRSNGLHGVIGKPETNVEFPRLQIVDLSNNSFKGKLPLEYFRNWTAMKNVRNEDLIY 760
Query: 361 ----------------------------------------TGIILSNNSFDSVIPASIAN 380
T I LS+N F+ IP + +
Sbjct: 761 MQANTSFLTSHNTMEKQYEYSMTMTNKGVMRLYEKIQDSLTAIDLSSNGFEGGIPEVLGD 820
Query: 381 LKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440
LK L +LNL NN L G IP L NL LE+LDLS+NK SG+IP QL +LTFL FNVS N
Sbjct: 821 LKALHLLNLSNNFLSGGIPPSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLAVFNVSHN 880
Query: 441 HLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGC---ESDVAPANEDHTKGSEESLFSG 497
L+G IP G QF TFDNTSFD+N GLCG PLSK C E + A ED GS
Sbjct: 881 FLSGRIPRGNQFETFDNTSFDANPGLCGEPLSKECGNGEDSLPAAKEDEGSGSPPE---- 936
Query: 498 TSDWKIILIGYAGGLVAGLVVGFNFSTGIIGWILEKLGTQQKATRRRR 545
S WK+++IGYA GLV G+++G +T W++E RR R
Sbjct: 937 -SRWKVVVIGYASGLVIGVILGCAMNTRKYEWLVENY-----FARRHR 978
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| TAIR|locus:2119445 | 719 | AT4G13820 [Arabidopsis thalian | 0.772 | 0.589 | 0.350 | 5.7e-59 | |
| TAIR|locus:2090754 | 711 | RLP43 "receptor like protein 4 | 0.790 | 0.610 | 0.371 | 1.7e-57 | |
| TAIR|locus:2046515 | 864 | RLP24 "receptor like protein 2 | 0.861 | 0.547 | 0.334 | 2.5e-57 | |
| TAIR|locus:2046585 | 808 | RLP27 "receptor like protein 2 | 0.777 | 0.528 | 0.360 | 2.5e-56 | |
| TAIR|locus:2046535 | 740 | RLP28 "receptor like protein 2 | 0.845 | 0.627 | 0.332 | 1.8e-55 | |
| TAIR|locus:2173777 | 792 | RLP54 "receptor like protein 5 | 0.768 | 0.532 | 0.356 | 2.9e-55 | |
| TAIR|locus:2086974 | 881 | RLP41 "AT3G25010" [Arabidopsis | 0.861 | 0.536 | 0.314 | 2e-54 | |
| TAIR|locus:2046397 | 589 | RLP22 "receptor like protein 2 | 0.810 | 0.755 | 0.325 | 4.9e-53 | |
| TAIR|locus:2046600 | 800 | RLP26 "receptor like protein 2 | 0.872 | 0.598 | 0.330 | 6.2e-53 | |
| TAIR|locus:2094563 | 595 | RLP36 "receptor like protein 3 | 0.826 | 0.763 | 0.321 | 1e-52 |
| TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 160/456 (35%), Positives = 239/456 (52%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVS-GQIT-SSLRNLSQLFFLDLAKNS 58
L L L NNF+G + SI L L + ++ N G + ++ +L L FLDL+ +
Sbjct: 279 LGVLSLLENNFNGPIPESISKLVGLFYLDLSLWNTKRGMVDFNTFLHLKSLTFLDLSYIN 338
Query: 59 YRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQ 118
R + + + + +L +L LS L + +T + S I L SCN+ +FPNFL+
Sbjct: 339 TRSMVDISIF-SPLLSLGYLDLSGINLKI--SSTLSLPSPMGTLI-LSSCNIPEFPNFLE 394
Query: 119 NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178
NQ L LD+S N+I G+VP+WL ++ L +NIS N +GF+ V+ G+LL
Sbjct: 395 NQTTLYYLDISANKIGGQVPQWLW--SLPELQYVNISQNSFSGFEGPADVIQ-RCGELLM 451
Query: 179 FDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 238
D+SSN Q P P+ P T +L S+N +GEIP IC L L++LVLS+NN +G +P+C
Sbjct: 452 LDISSNTFQDPFPLLPNSTTIFLGSDNRFSGEIPKTICKLVSLDTLVLSNNNFNGSIPRC 511
Query: 239 LGNSSDELSVLDLQGNNFFGTIPNTFIKER-------------RIPRSLINCSKLEFLGL 285
+ LSVL L+ NN G P I + +P+SLINC++LEFL +
Sbjct: 512 FEKFNTTLSVLHLRNNNLSGEFPEESISDHLRSLDVGRNRLSGELPKSLINCTRLEFLNV 571
Query: 286 GNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP 345
+N I+D FP WL LP L + +LRSN F+G I F KLRI D+S N F G L
Sbjct: 572 EDNIINDKFPFWLRMLPKLQIFVLRSNEFHGPISSLGDSLSFPKLRIFDISENRFNGVLR 631
Query: 346 LKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGXXXXXXXXXXXXGHIPSCLGNL 405
F W+AM + I+ ++P+ A G I +G++
Sbjct: 632 SDFFAGWSAMS--SAVDIV-------DIMPSRYAGRDSGNYYNSVTMTVKGSIIELVGSV 682
Query: 406 PNL-ESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440
+ +++D+S N+F G+IP+ + L L N+S+N
Sbjct: 683 FTIYKTIDVSGNRFEGRIPESIGLLKELIVLNMSNN 718
|
|
| TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 177/476 (37%), Positives = 241/476 (50%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L L L N+F G ++ SI NL L + ++ + SGQ+ SS+ NLS L FLDL N +
Sbjct: 123 LTTLDLSFNDFKGQIMSSIENLSHLTYLDLSFNHFSGQVPSSIGNLSHLTFLDLYCNQFS 182
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCN-LTKFPNFLQN 119
G + + + +L L LS NR ++ S L + L N L + P+ + N
Sbjct: 183 GQVPSSI--GNLSHLTTLELSFNRFFGQFPSSIGGLSH-LTTLNLFVNNFLGQIPSSIGN 239
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNIS-HNFLTGFDQHLVVLPANKGDLLT 178
+L L L N G++P ++ N+ L L++S +NF L LP +L
Sbjct: 240 LSNLTSLYLCKNNFSGQIPSFI--GNLSQLTRLDLSSNNFFGEIPGWLWTLP----NLFY 293
Query: 179 FDLSSNNLQG-PLP-VPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236
+LS N G P P P H L SNN+ TG+IPS+IC L LE+L LS NN SGL+P
Sbjct: 294 VNLSYNTFIGFQRPNKPEPSMGHLLGSNNNFTGKIPSFICELRSLETLDLSDNNFSGLIP 353
Query: 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERR------------IPRSLINCSKLEFLG 284
+C+GN LS L+L+ NN G +P + R +PRSL S LE L
Sbjct: 354 RCMGNLKSNLSHLNLRQNNLSGGLPKHIFEILRSLDVGHNQLVGKLPRSLRFFSTLEVLN 413
Query: 285 LGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTL 344
+ +N+I+DTFP WL +LP L VL+LRSN F+G I E F KLRIID+S+N F GTL
Sbjct: 414 VESNRINDTFPFWLTSLPKLQVLVLRSNAFHGPIHE----ASFLKLRIIDISHNHFNGTL 469
Query: 345 PLKSFLCWNAMKIVNTTGIILSNNSFDSVI--PASIANLKGX-----------XXXXXXX 391
P F+ W+AM + T + N SV + + KG
Sbjct: 470 PSDYFVKWSAMSSLGTDEDRSNANYMGSVYYQDSMVLMNKGVESELIRILTIYTALDFSG 529
Query: 392 XXXXGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
G IP +G L L L+LSNN F+G IP + +LT LE +VS N L G IP
Sbjct: 530 NKFEGEIPKSIGLLKELLVLNLSNNAFTGHIPSSMGKLTALESLDVSQNKLYGEIP 585
|
|
| TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 2.5e-57, P = 2.5e-57
Identities = 170/508 (33%), Positives = 260/508 (51%)
Query: 1 LQFLYLRLNNFSGDL-LGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSY 59
L L LR N+ SG + + + LE +++ ++ G+I + L L LDL+ +
Sbjct: 280 LSTLDLRENDLSGSIEVPNSSTSSKLEIMYLGFNHLEGKILEPISKLINLKRLDLSFLNT 339
Query: 60 RGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQN 119
I L+ LL+ K+L +L S N LS + ++S+ ++ I L C + +FPN L++
Sbjct: 340 SYPIDLN-LLSPLKSLSYLDFSGNSLSPASLSSSSYIPLSMESIVLSLCGIREFPNILKH 398
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
+L+ +D++ N+I+GK+P+WL + L+ ++IS+N GF V +L
Sbjct: 399 LQNLIHIDITSNQIKGKIPEWLW--TLPQLSFVDISNNSFNGFQGSAEVFVNLSVRILML 456
Query: 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
D +NN +G LP P I + A +NS TGEIP ICN L + LS+NN +G +PQCL
Sbjct: 457 D--ANNFEGALPTLPLSIIGFSAIHNSFTGEIPLSICNRTSLTMVDLSYNNFTGPIPQCL 514
Query: 240 GNSSDELSVLDLQGNNFFGTIPNTFIKER--------------RIPRSLINCSKLEFLGL 285
N ++L+ N+ G+IP+TF + ++PRSL+NCS L FL +
Sbjct: 515 SN----FMFVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCSSLRFLSV 570
Query: 286 GNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD-CGFSKLRIIDLSNNIFIGTL 344
NN++ DTFP WL LPNL VL LRSN FYG I P GF +LRI ++++N+F G+L
Sbjct: 571 DNNRVKDTFPFWLKALPNLRVLTLRSNKFYGPISPPHQGPLGFPELRIFEIADNMFTGSL 630
Query: 345 PLKSFLCWNAMKIV-NTTGIILSNNSFDSVIPASIANLKGXXXXXXXXXXXXGHIPSCLG 403
P F+ W A + N G + +D A+ + ++ H+
Sbjct: 631 PPSFFVNWKASALTKNEDGGLYMVYEYDK---AANSPVRYTYTDTIDLQYKGLHMEQ-ER 686
Query: 404 NLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNT-SFD- 461
L + ++D S N+ GQIP+ + L L N+S+N TG IP FA N S D
Sbjct: 687 VLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIP--LSFANLMNLESLDM 744
Query: 462 SNSGLCGR-PLSKGCESDVAPANEDHTK 488
S + L G P G S + + H K
Sbjct: 745 SGNQLSGTIPNGLGSLSFLVYISVAHNK 772
|
|
| TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 169/469 (36%), Positives = 250/469 (53%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRS-LEAIHIAKCNVSGQITSSLRNLSQLFFLDLA--KN 57
L L LR N +G + + S LE +++ + GQI + L L LDL+ K
Sbjct: 195 LSSLDLRENYLTGSIEAPNSSTSSRLEFMYLGNNHFEGQILEPISKLINLKHLDLSFLKT 254
Query: 58 SYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQ-KLKYIGLRSCNLTKFPNF 116
SY I L+ L +S+K+L L LS N L + T TS++ L+ + L SC L +FP
Sbjct: 255 SY--PIDLN-LFSSFKSLVRLVLSGNSL-LATSITSDSKIPLNLENLVLLSCGLIEFPTI 310
Query: 117 LQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDL 176
L+N L +DLS+N+I+GKVP+W N+ L +N+ +N T + VL + L
Sbjct: 311 LKNLTKLEHIDLSNNKIKGKVPEWFW--NLPRLRRVNLFNNLFTDLEGSEEVLVNSSVRL 368
Query: 177 LTFDLSSNNLQGPLPVPPPGTIHYLAS-NNSLTGEIPSWICNLNILESLVLSHNNLSGLL 235
L DL+ N+ +GP P PP +I+ L++ NNS TG IP CN + L L LS+NNL+G +
Sbjct: 369 L--DLAYNHFRGPFPKPPL-SINLLSAWNNSFTGNIPLETCNRSSLAILDLSYNNLTGPI 425
Query: 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIKER--------------RIPRSLINCSKLE 281
P+CL + + L V++L+ NN G++P+ F ++PRSL+NCS L
Sbjct: 426 PRCLSDFQESLIVVNLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLR 485
Query: 282 FLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP-RTDCGFSKLRIIDLSNNIF 340
F+ + +N+I DTFP WL LP+L L LRSN F+G I P R F KLRI+++S+N F
Sbjct: 486 FVSVDHNKIKDTFPFWLKALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRILEISDNNF 545
Query: 341 IGTLPLKSFLCWNAMKI-VNTTG-IILSNNSFDSVIPASIANLKGXXXXXXXXXXXXGHI 398
G+LP F+ W A + +N G I + + + I +L+ G +
Sbjct: 546 TGSLPPNYFVNWEASSLQMNEDGRIYMGDYNNPYYIYEDTVDLQ-----YKGLFMEQGKV 600
Query: 399 PSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L + ++D S NK GQIP+ + L L N+S+N TG IP
Sbjct: 601 ------LTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIP 643
|
|
| TAIR|locus:2046535 RLP28 "receptor like protein 28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 170/512 (33%), Positives = 261/512 (50%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L +L L N+F+G + + LE +++ GQI + L L L+L+ +
Sbjct: 198 LSYLNLYGNHFTGSI--EVSTSSKLEILYLGLKPFEGQILEPISKLINLKRLELSFLNIS 255
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
+ L+ L +S K+L +L LS N +S + + L+ + L C + +FPN L+
Sbjct: 256 YPLDLN-LFSSLKSLTYLDLSGNSISPRSLRSDLYIPLTLEKLLLEQCGIIEFPNILKTL 314
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
L +D+S+NRI GK+P+WL + L ++++++N GF+ VL + ++L F
Sbjct: 315 QKLEYIDMSNNRINGKIPEWLW--RLPRLRSMSLANNSFNGFEGSTDVLVNSSMEIL-F- 370
Query: 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240
+ SNN+QG LP P + A N+ +GEIP ICN + L +L L +NN +G +PQCL
Sbjct: 371 MHSNNIQGALPNLPLSIKAFSAGYNNFSGEIPLSICNRSSLAALSLPYNNFTGKIPQCLS 430
Query: 241 NSSDELSVLDLQGNNFFGTIPNTF--------------IKERRIPRSLINCSKLEFLGLG 286
N L+ + L+ NN G+IP+T + +PRSL+NCS LEFL +
Sbjct: 431 N----LTFVHLRKNNLEGSIPDTLCAGDSLQTLDIGFNLISGTLPRSLLNCSSLEFLSVD 486
Query: 287 NNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP-RTDCGFSKLRIIDLSNNIFIGTLP 345
NN+I DTFP WL LPNL VLIL SN YG I P ++ F +LRI ++++N+F GTL
Sbjct: 487 NNRIKDTFPFWLKALPNLQVLILSSNKLYGPIAPPHQSPLAFPELRIFEIADNMFTGTLS 546
Query: 346 LKSFLCWNAMKI-VNTTG---IILSNNSF--DSVIPASIANLKGXXXXXXXXXXXXGHIP 399
+ F+ W + VN G ++ NN+F DS + ++K
Sbjct: 547 PRYFVNWKTSSLTVNEDGDLYMVYKNNAFGIDSYVYRDTIDMKYKGLSMEQQMV------ 600
Query: 400 SCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTS 459
L + ++D S N+ GQIP+ + L L N+S+N T IP AT + S
Sbjct: 601 -----LNSYSAIDFSGNRLEGQIPKSIGLLKELIALNLSNNAFTCHIPLSLANAT-ELES 654
Query: 460 FD-SNSGLCGRPLSKGCE--SDVAPANEDHTK 488
D S + L G + G + S +A N H K
Sbjct: 655 LDLSRNQLSGT-IPNGLKTLSFLAYINVSHNK 685
|
|
| TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 165/463 (35%), Positives = 237/463 (51%)
Query: 4 LYLRLNNFSGDLLG-SIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGT 62
L LR N+ S L + L + +A +S +I + L+ L +DL+ T
Sbjct: 215 LNLRQNHLSDPLENINYSATSKLLILDMAYNLMSHRILEPISKLANLIQIDLSFQKTPYT 274
Query: 63 IKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYH 122
D LL +K+L L LS N +SV+ T S+ L ++ L SCN+T+FP F+++
Sbjct: 275 FNFDFLL--FKSLVRLDLSGNSVSVV-----GTGSENLTHLDLSSCNITEFPMFIKDLQR 327
Query: 123 LLVLDLSDNRIQGKVPK--WLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
L LD+S+NRI+GKVP+ W L P+M ++N S + L G + ++L ++ +L D
Sbjct: 328 LWWLDISNNRIKGKVPELLWTL-PSMLHVNLSRNSFDSLEGTPK--IILNSSISEL---D 381
Query: 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240
LSSN +G P+ PP ASNN TG IP C L L LS+NN SG +P+CL
Sbjct: 382 LSSNAFKGSFPIIPPYVNIMAASNNYFTGGIPLIFCKRYRLSLLDLSNNNFSGTIPRCLT 441
Query: 241 NSSDELSVLDLQGNNFFGTIPNTFIKER-------------RIPRSLINCSKLEFLGLGN 287
N S L L L N+ G +P+ I++R ++PRSL+NC+ L+FL +
Sbjct: 442 NVSLGLEALKLSNNSLTGRLPD--IEDRLVLLDVGHNQISGKLPRSLVNCTTLKFLNVEG 499
Query: 288 NQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLK 347
N I+DTFP WL L L +++LRSN F+G I P F+ LRIID+S N F G+LP
Sbjct: 500 NHINDTFPFWLKALTRLEIIVLRSNRFHGPISSPEVSLSFTALRIIDISRNSFNGSLPQN 559
Query: 348 SFLCWNAMKIVNTT-GIILSNNSFD--SVIPASIANLKGXXXXXXXXXXXXGHIPSCLGN 404
F W+A +VNT G + D S + + G IP
Sbjct: 560 YFANWSA-PLVNTPQGYRWPEYTGDEHSKYETPLWSYPSIHLRIKGRSIELGKIPD---- 614
Query: 405 LPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
S+D S N F GQIP+ + +L L ++S+N TG IP
Sbjct: 615 --TYTSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTGRIP 655
|
|
| TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 2.0e-54, P = 2.0e-54
Identities = 159/506 (31%), Positives = 256/506 (50%)
Query: 1 LQFLYLRLNNFSGDL-LGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSY 59
L +L L+ NN +G + + + + LE++++ K + G+I + L L LDL+ S
Sbjct: 294 LSYLSLKGNNLNGSIEVPNSSSSSRLESLYLGKNHFEGKILKPISKLINLKELDLSFLST 353
Query: 60 RGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQN 119
I L L +S+K+L L L+ + +S ++ + S L+ + ++ CN++ FPN L++
Sbjct: 354 SYPIDLS-LFSSFKSLLVLDLTGDWISQAGLSSDSYISLTLEALYMKQCNISDFPNILKS 412
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
+L +D+S+NR+ GK+P+WL ++ L+++ I N LTGF+ +L + +L
Sbjct: 413 LPNLECIDVSNNRVSGKIPEWLW--SLPRLSSVFIGDNLLTGFEGSSEILVNSSVQILVL 470
Query: 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
D SN+L+G LP P I++ A N G+IP ICN + L+ L L +NN +G +P CL
Sbjct: 471 D--SNSLEGALPHLPLSIIYFSARYNRFKGDIPLSICNRSSLDVLDLRYNNFTGPIPPCL 528
Query: 240 GNSSDELSVLDLQGNNFFGTIPNTFIKER--------------RIPRSLINCSKLEFLGL 285
N L L+L+ NN G+IP+T+ + ++PRSL+NCS L+FL +
Sbjct: 529 SN----LLFLNLRKNNLEGSIPDTYFADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSV 584
Query: 286 GNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRT-DCGFSKLRIIDLSNNIFIGTL 344
+N I DTFP +L LP L VL+L SN FYG + P GF +LRI++++ N G+L
Sbjct: 585 DHNGIEDTFPFYLKVLPKLQVLLLSSNKFYGPLSPPNQGSLGFPELRILEIAGNKLTGSL 644
Query: 345 PLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGXXXXXXXXXXXXGHIPSCLGN 404
P F+ W A + + V + + G
Sbjct: 645 PQDFFVNWKASSLTMN-----EDQGLYMVYSKVVYGIYYLSYLATIDLQYKGLSMEQKWV 699
Query: 405 LPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSN 463
L + ++DLS N+ G+IP+ + L L N+S+N TG IP ++ SN
Sbjct: 700 LTSSATIDLSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLVKIESLDLSSN 759
Query: 464 SGLCGR-PLSKGCESDVAPANEDHTK 488
L G P G S +A N H +
Sbjct: 760 Q-LSGTIPNGLGTLSFLAYVNVSHNQ 784
|
|
| TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 160/492 (32%), Positives = 253/492 (51%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRS-LEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSY 59
L +L L N+ +G I N S LE +++ + +I + L L +L L+ +
Sbjct: 4 LSYLDLSENHLTGSF--EISNSSSKLENLNLGNNHFETEIIDPVLRLVNLRYLSLSFLNT 61
Query: 60 RGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQK-LKYIGLRSCNLTKFPNFLQ 118
I L + + ++L L L N L+ LT S+ K ++ + L CN+++FP FL+
Sbjct: 62 SHPIDLSIF-SPLQSLTHLDLHGNSLT-LTSVYSDIDFPKNMEILLLSGCNISEFPRFLK 119
Query: 119 NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178
+ L LDLS NRI+G VP W+ ++ L +L++S+N TGF+ L + AN +
Sbjct: 120 SLKKLWYLDLSSNRIKGNVPDWIW--SLPLLVSLDLSNNSFTGFNGSLDHVLANSS-VQV 176
Query: 179 FDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 238
D++ N+ +G P PP I+ A NNS TG+IP +CN L+ L LS+NN +G +P C
Sbjct: 177 LDIALNSFKGSFPNPPVSIINLSAWNNSFTGDIPLSVCNRTSLDVLDLSYNNFTGSIPPC 236
Query: 239 LGNSSDELSVLDLQGNNFFGTIPNTFIKER--------------RIPRSLINCSKLEFLG 284
+GN ++++L+ N G IP+ F +PRSL+NCS + FL
Sbjct: 237 MGN----FTIVNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLS 292
Query: 285 LGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP--RTDCGFSKLRIIDLSNNIFIG 342
+ +N+I+D+FP WL LPNL VL LRSN F+G + P ++ F KL+I+++S+N F G
Sbjct: 293 VDHNRINDSFPLWLKALPNLKVLTLRSNSFHGPMSPPDDQSSLAFPKLQILEISHNRFTG 352
Query: 343 TLPLKSFLCWN--AMKIVNTTGIILSNNSFDSVIPASIANLKGXXXXXXXXXXXXGHIPS 400
+LP F W+ ++K+ + + + + S D + +L+ G +
Sbjct: 353 SLPTNYFANWSVKSLKMYDEERLYMGDYSSDRFVYEDTLDLQ-----YKGLYMEQGKV-- 405
Query: 401 CLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSF 460
L ++D S NK G+IP+ + L L N+S+N TG IP FA T
Sbjct: 406 ----LTFYSAIDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIP--MSFANV--TEL 457
Query: 461 DSNSGLCGRPLS 472
+S L G LS
Sbjct: 458 ESLD-LSGNKLS 468
|
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| TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 6.2e-53, P = 6.2e-53
Identities = 173/524 (33%), Positives = 261/524 (49%)
Query: 1 LQFLYLRLNNFSGDL-LGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSY 59
L +L L+ N+ +G + + + + L + + G+I + L L L+LA +
Sbjct: 189 LSYLDLKKNHLTGSIDVPNSSSSSKLVRLSLGFNQFEGKIIEPISKLINLNHLELASLNI 248
Query: 60 RGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQN 119
I L V K+L + NRL + ++ + L + L C++ +FPN +
Sbjct: 249 SHPIDLRVF-APLKSLLVFDIRQNRLLPASLSSDSEFPLSLISLILIQCDIIEFPNIFKT 307
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
+L +D+S+N I+GKVP+W + L+ N+ +N LTGF+ VL + LL
Sbjct: 308 LQNLEHIDISNNLIKGKVPEWFW--KLPRLSIANLVNNSLTGFEGSSEVLLNSSVQLL-- 363
Query: 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
D + N++ G P PP G+I+ A NNS TG IP ICN + L L LS+N +G +PQCL
Sbjct: 364 DFAYNSMTGAFPTPPLGSIYLSAWNNSFTGNIPLSICNRSSLIVLDLSYNKFTGPIPQCL 423
Query: 240 GNSSDELSVLDLQGNNFFGTIPNTF---IKER-----------RIPRSLINCSKLEFLGL 285
N L V++L+ N+ G+IP+ F K + ++P+SL+NCS L FL +
Sbjct: 424 SN----LKVVNLRKNSLEGSIPDEFHSGAKTQTLDVGYNRLTGKLPKSLLNCSSLRFLSV 479
Query: 286 GNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP-RTDCGFSKLRIIDLSNNIFIGTL 344
NN+I DTFP WL LPNL+VL LRSN F+G + P R F +LRI++LS+N F G+L
Sbjct: 480 DNNRIEDTFPFWLKALPNLHVLTLRSNRFFGHLSPPDRGPLAFPELRILELSDNSFTGSL 539
Query: 345 PLKSFLCWNAMKI-VNTTGIILSNNSFDSV-IPASIANLKGXXXXXXXXXXXXGHIPSCL 402
P F+ W A +N G I + ++ I +L+ G +
Sbjct: 540 PPNFFVNWKASSPKINEDGRIYMGDYKNAYYIYEDTMDLQ-----YKGLFMEQGKV---- 590
Query: 403 GNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFD- 461
L ++D S NK GQIP+ + L L N+S+N TG IP T + S D
Sbjct: 591 --LTFYSTIDFSGNKLEGQIPESIGLLKELIALNLSNNAFTGHIPMSLANVT-ELESLDL 647
Query: 462 SNSGLCGR-PLSKGCESDVAPANEDHT--KGS--EESLFSGTSD 500
S + L G P G S +A + H KG + FSG ++
Sbjct: 648 SRNQLSGNIPRELGSLSFLAYISVAHNQLKGEIPQGPQFSGQAE 691
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| TAIR|locus:2094563 RLP36 "receptor like protein 36" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 160/498 (32%), Positives = 249/498 (50%)
Query: 1 LQFLYLRLNNFSG-DLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSY 59
L LYL N F+G D + + NL SL I ++ I++ L L L + NS+
Sbjct: 22 LSELYLFGNQFTGGDTV--LANLTSLSIIDLSLNYFKSSISADLSGLHNLERFSVYNNSF 79
Query: 60 RGTIKLDVLLTSWKNLEFLALSLNRLS--VLTKATSNTTSQKLKYIGLRSCNLTKFPNFL 117
G L +L+ +L + LS N + + T + + ++ Y+G + + P +
Sbjct: 80 SGPFPLSLLMIP--SLVHIDLSQNHFEGPIDFRNTFSLSRLRVLYVGFNNLD-GLIPESI 136
Query: 118 QNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLL 177
+L LD+S N G+VP+ + + NL ++++S+N L G V ++K D +
Sbjct: 137 SKLVNLEYLDVSHNNFGGQVPRSI--SKVVNLTSVDLSYNKLEGQVPDFV-WRSSKLDYV 193
Query: 178 TFDLSSNN-LQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLL 235
+S N + V ++ L +NS+ G P WIC + L +L LS+N+ +G +
Sbjct: 194 DLSYNSFNCFAKSVEVIDGASLTMLNLGSNSVDGPFPKWICKVKDLYALDLSNNHFNGSI 253
Query: 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIKER--------------RIPRSLINCSKLE 281
PQCL S+ L+L+ N+ G +PN FIK+ ++P+SLINC ++E
Sbjct: 254 PQCLKYST-YFHTLNLRNNSLSGVLPNLFIKDSQLRSLDVSSNNLVGKLPKSLINCERIE 312
Query: 282 FLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFI 341
FL + N+I DTFP WLG+LP L VL+L SN FYG + P GF +RIID+SNN F+
Sbjct: 313 FLNVKGNKIMDTFPFWLGSLPYLKVLMLGSNAFYGPVYNPSAYLGFPSIRIIDISNNNFV 372
Query: 342 GTLPLKSFLCWNAMKIVNTTGII-----LSN---NSFDSV------IPASIANL-KGXXX 386
G+LP F W M +V + I + N +++DS+ + + +G
Sbjct: 373 GSLPQDYFANWLEMSLVWSGSDIPQFKYMGNVNFSTYDSIDLVYKGVETDFDRIFEGFNA 432
Query: 387 XXXXXXXXXGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLI 446
GHIP +G L L L+LS N F+G IP L +T LE ++S N+L+G I
Sbjct: 433 IDFSGNRFSGHIPGSIGLLSELRLLNLSGNAFTGNIPPSLANITNLESLDLSRNNLSGEI 492
Query: 447 PPGKQFATF-DNTSFDSN 463
P +F NT+F N
Sbjct: 493 PISLGKLSFLSNTNFSYN 510
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00029112001 | SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (1311 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 549 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-46 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-44 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-37 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-19 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-07 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 6e-07 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 7e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-05 | |
| PRK15370 | 754 | PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl | 1e-05 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 7e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.001 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.002 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 3e-46
Identities = 149/479 (31%), Positives = 222/479 (46%), Gaps = 58/479 (12%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L+FL L N G + +G ++SL+ I++ N+SG+I + L+ L LDL N+
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
G I L + KNL++L L N+LS P + +
Sbjct: 250 GPIP--SSLGNLKNLQYLFLYQNKLS------------------------GPIPPSIFSL 283
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG-FDQHLVVLPANKGDLLTF 179
L+ LDLSDN + G++P+ ++ +QNL L++ N TG L LP L
Sbjct: 284 QKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVALTSLPR----LQVL 337
Query: 180 DLSSNNLQGPLPVPPPGTIHYLA----SNNSLTGEIPSWICNLNILESLVLSHNNLSGLL 235
L SN G +P G + L S N+LTGEIP +C+ L L+L N+L G +
Sbjct: 338 QLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396
Query: 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295
P+ LG L + LQ N+F G +P+ F K L+ FL + NN +
Sbjct: 397 PKSLGACR-SLRRVRLQDNSFSGELPSEFTK-----LPLVY-----FLDISNNNLQGRIN 445
Query: 296 SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355
S +P+L +L L N F+G + + G +L +DLS N F G +P K
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPD---SFGSKRLENLDLSRNQFSGAVPRK------LG 496
Query: 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415
+ + LS N IP +++ K L L+L +N L G IP+ +P L LDLS
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556
Query: 416 NKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKG 474
N+ SG+IP+ L + L N+S NHL G +P F + ++ N LCG + G
Sbjct: 557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSG 615
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 7e-44
Identities = 152/472 (32%), Positives = 222/472 (47%), Gaps = 50/472 (10%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L++L L NNF+G + G++ +LE + ++ +SG+I + + + S L LDL N
Sbjct: 120 LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRL-----SVLTKATSNTTSQKLKYIGLRSCNLT-KFP 114
G I LT+ +LEFL L+ N+L L + S LK+I L NL+ + P
Sbjct: 178 GKIPNS--LTNLTSLEFLTLASNQLVGQIPRELGQMKS------LKWIYLGYNNLSGEIP 229
Query: 115 NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKG 174
+ L LDL N + G +P L N++NL L + N L+G + +
Sbjct: 230 YEIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSGPIPPSIF---SLQ 284
Query: 175 DLLTFDLSSNNLQGPLP----VPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNN 230
L++ DLS N+L G +P I +L SNN TG+IP + +L L+ L L N
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNK 343
Query: 231 LSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLIN 276
SG +P+ LG ++ L+VLDL NN G IP E IP+SL
Sbjct: 344 FSGEIPKNLGKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402
Query: 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLS 336
C L + L +N S PS LP + L + +N G I + D L+++ L+
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD--MPSLQMLSLA 460
Query: 337 NNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQG 396
N F G LP ++ + LS N F +P + +L L L L N L G
Sbjct: 461 RNKFFGGLP-------DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513
Query: 397 HIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448
IP L + L SLDLS+N+ SGQIP E+ L ++S N L+G IP
Sbjct: 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 1e-37
Identities = 134/448 (29%), Positives = 203/448 (45%), Gaps = 66/448 (14%)
Query: 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80
N + +I ++ N+SG+I+S++ L + ++L+ N G I D+
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIF------------ 114
Query: 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLT-KFPN-FLQNQYHLLVLDLSDNRIQGKVP 138
TTS L+Y+ L + N T P + N L LDLS+N + G++P
Sbjct: 115 --------------TTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEIP 157
Query: 139 KWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTI 198
+ + +L L++ N L G + N L L+SN L G +P G +
Sbjct: 158 NDI--GSFSSLKVLDLGGNVLVG---KIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQM 211
Query: 199 H-----YLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQG 253
YL NN L+GEIP I L L L L +NNL+G +P LGN + L L L
Sbjct: 212 KSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN-LQYLFLYQ 269
Query: 254 NNFFGTIPNTFIKERR--------------IPRSLINCSKLEFLGLGNNQISDTFPSWLG 299
N G IP + ++ IP +I LE L L +N + P L
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329
Query: 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVN 359
+LP L VL L SN F G I P+ + L ++DLS N G +P LC + N
Sbjct: 330 SLPRLQVLQLWSNKFSGEI--PKNLGKHNNLTVLDLSTNNLTGEIP--EGLCSSG----N 381
Query: 360 TTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419
+IL +NS + IP S+ + L+ + LQ+NS G +PS LP + LD+SNN
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441
Query: 420 GQIPQQLVELTFLEFFNVSDNHLTGLIP 447
G+I + ++ L+ +++ N G +P
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLP 469
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 1e-19
Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 362 GIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQ 421
G+ L N IP I+ L+ LQ +NL NS++G+IP LG++ +LE LDLS N F+G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 422 IPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFD--SNSGLCGRPLSKGCES 477
IP+ L +LT L N++ N L+G +P SF+ N+GLCG P + C
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 539
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIAN 380
P L+ I+LS N G +P S ++++++ LS NSF+ IP S+
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLD-----LSYNSFNGSIPESLGQ 488
Query: 381 LKGLQVLNLQNNSLQGHIPSCLGNLP 406
L L++LNL NSL G +P+ LG
Sbjct: 489 LTSLRILNLNGNSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 6e-07
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 363 IILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
+ LSNN + + L L+VL+L N+L P LP+L SLDLS N
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 345 PLKSFLCWNAMKIV-NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLG 403
PLK WN+ V GI +N+S I +L ++ G I S +
Sbjct: 44 PLKYLSNWNSSADVCLWQGITCNNSSRVVSI-------------DLSGKNISGKISSAIF 90
Query: 404 NLPNLESLDLSNNKFSGQIPQQLVELTF-LEFFNVSDNHLTGLIPPG 449
LP +++++LSNN+ SG IP + + L + N+S+N+ TG IP G
Sbjct: 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG 137
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 180 DLSSNNLQGPLPVPPPGTIHYLA---SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236
L + L+G +P H + S NS+ G IP + ++ LE L LS+N+ +G +P
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483
Query: 237 QCLGNSSDELSVLDLQGNNFFGTIP 261
+ LG + L +L+L GN+ G +P
Sbjct: 484 ESLGQLT-SLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 7e-06
Identities = 91/309 (29%), Positives = 119/309 (38%), Gaps = 41/309 (13%)
Query: 172 NKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWI--CNLNILESLVLSHN 229
+ L SS + L + P I L + +L +P NLN L S +
Sbjct: 54 LSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELL 113
Query: 230 NLSGL------------LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC 277
L+ L +P +G L LDL N +P L N
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-----------ESLPSPLRNL 162
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
L+ L L N +SD L L NLN L L N I P S L +DLSN
Sbjct: 163 PNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNK---ISDLPPEIELLSALEELDLSN 218
Query: 338 NIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGH 397
N I L S L N +G+ LSNN + +P SI NL L+ L+L NN +
Sbjct: 219 NSIIELLSSLSNLK-------NLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-- 268
Query: 398 IPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDN 457
S LG+L NL LDLS N S +P + L LE + + LT K + N
Sbjct: 269 SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLE--LLLNLLLTLKALELKLNSILLN 326
Query: 458 TSFDSNSGL 466
+ SN
Sbjct: 327 NNILSNGET 335
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442
L+ L+L NN L LPNL+ LDLS N + P+ L L ++S N+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 1e-05
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 35/228 (15%)
Query: 100 LKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159
+K + S LT P L + + ++LS NRI ++P+ L P+ L +L++ HN +
Sbjct: 222 IKTLYANSNQLTSIPATLPDT--IQEMELSINRIT-ELPERL--PSA--LQSLDLFHNKI 274
Query: 160 TGFDQHLVVLPANKGD-LLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNL 218
+ LP N + L + N+++ P G H +NSLT + L
Sbjct: 275 S-------CLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGL 327
Query: 219 NILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTF---IKERRIPRS-L 274
LE + N LP L EL VLD+ N +P T I + R+ L
Sbjct: 328 KTLE----AGENALTSLPASL---PPELQVLDVS-KNQITVLPETLPPTITTLDVSRNAL 379
Query: 275 INC-----SKLEFLGLGNNQIS---DTFPSWLGTLPNLNVLILRSNIF 314
N + L+ + N + ++ P + G P +I+ N F
Sbjct: 380 TNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427
|
Length = 754 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 70/326 (21%), Positives = 114/326 (34%), Gaps = 76/326 (23%)
Query: 126 LDLSDNRIQGKVPKWLLD--PNMQNLNALNISHNFLTGFDQHLVV------LPANKG--D 175
+DLS N I + + L + N++NL +N S F TG D+ + L A
Sbjct: 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPR 93
Query: 176 LLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLL 235
L DLS N P ++S+ L L L++N L +
Sbjct: 94 LQKVDLSDNAFG---SEFPEELGDLISSSTDL--------------VHLKLNNNGLGPIA 136
Query: 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295
+G + L+ + + KLE + G N++ +
Sbjct: 137 GGRIGKALFHLAYN----------------------KKAADKPKLEVVICGRNRL-ENGS 173
Query: 296 S--WLGTL---PNLNVLILRSNIFYGIIKEPRTDCGFSK------LRIIDLSNNIF--IG 342
L NL + ++ N GI E T F L ++DL +N F G
Sbjct: 174 KELSAALLESHENLKEVKIQQN---GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG 230
Query: 343 TLPLKSFLC-WNAMKIVNTTGIILSNNSFDSVIP-ASIANLKGLQVLNLQNNSLQGHIPS 400
+ L LC WN ++ + +LSN SV+ + + L L N +G I
Sbjct: 231 SRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL 290
Query: 401 CL-------GNLPNLESLDLSNNKFS 419
+ +P L L+ + N+
Sbjct: 291 DISLNEFEQDAVPLLVDLERNGNRIK 316
|
Length = 388 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 176 LLTFDLSSNNLQGPLPVPPPGTIHYLA----SNNSLTGEIPSWICNLNILESLVLSHNNL 231
L + +LS N+++G +P P G+I L S NS G IP + L L L L+ N+L
Sbjct: 444 LQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
Query: 232 SGLLPQCLG 240
SG +P LG
Sbjct: 503 SGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 113 FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPAN 172
PN + HL ++LS N I+G +P L ++ +L L++S+N G +P +
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSFNG------SIPES 485
Query: 173 KGDLLT---FDLSSNNLQGPLP 191
G L + +L+ N+L G +P
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.78 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.77 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.71 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.71 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.64 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.62 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.61 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.32 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.24 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.23 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.16 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.12 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.09 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.09 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.07 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.06 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.03 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.03 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.02 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 99.0 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.0 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.9 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.78 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.74 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.74 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.65 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.49 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.48 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.44 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.3 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.24 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.1 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.04 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.04 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.02 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.02 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.98 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.98 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.97 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.93 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.92 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.85 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.74 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.71 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.56 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.34 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.27 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.07 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.7 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.65 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.38 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.33 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.2 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.8 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.73 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.67 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.91 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.91 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 90.77 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.65 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.65 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 90.07 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 87.86 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 86.05 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 84.26 | |
| PF08374 | 221 | Protocadherin: Protocadherin; InterPro: IPR013585 | 83.82 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 83.58 | |
| smart00365 | 26 | LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | 80.39 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=475.01 Aligned_cols=453 Identities=33% Similarity=0.501 Sum_probs=295.2
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
||+|+|++|.+++.+|. ..+++|++|+|++|.+.+..|..++++++|++|++++|.+.+..|.. +.++++|++|++
T Consensus 120 L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L 195 (968)
T PLN00113 120 LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS--LTNLTSLEFLTL 195 (968)
T ss_pred CCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh--hhhCcCCCeeec
Confidence 56677777766665553 34566666666666666666666666666666666666666666655 566666666666
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
++|.+........ ..+.+|++|++++|.+ ..+|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+
T Consensus 196 ~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l 272 (968)
T PLN00113 196 ASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKL 272 (968)
T ss_pred cCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh--CCCCCCEEECcCCee
Confidence 6664432211111 1456666666666666 35566666666666666666666666666665 666666666666665
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCC
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 236 (549)
.+..+.. ..... +|+.|++++|.+.+.+|.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus 273 ~~~~p~~-l~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 273 SGPIPPS-IFSLQ--KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred eccCchh-Hhhcc--CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 5443331 11122 2666666666655555432 4555556666665555555555555566666666555555555
Q ss_pred cchhcCCCCCCeeecCCCccCCcCCCcccc--------------cCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCC
Q 040238 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLP 302 (549)
Q Consensus 237 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 302 (549)
..+.... +|+.|++++|.+++..|..+.. .+.+|..+..+++|+.|++++|.+++..|..+..++
T Consensus 350 ~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 350 KNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred hHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 5444433 4555555555555544443322 122344445555555555555555554554455555
Q ss_pred CCCEEEccCcccccccCCCC---------------------CccCCCCCceeeCCCCccccccChhhhhccccccccccc
Q 040238 303 NLNVLILRSNIFYGIIKEPR---------------------TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTT 361 (549)
Q Consensus 303 ~L~~L~L~~n~l~~~~~~~~---------------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~ 361 (549)
+|+.|++++|.+.+..+... .....++|+.|++++|++.+.+|. .+..++.+ +
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L-----~ 502 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR-KLGSLSEL-----M 502 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh-hhhhhhcc-----C
Confidence 55555555554444332211 001335666677777766666553 35555555 8
Q ss_pred eEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCc
Q 040238 362 GIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNH 441 (549)
Q Consensus 362 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 441 (549)
.|++++|.+.+.+|+.+..+++|++|++++|.+++.+|..|..+++|+.|++++|++++.+|..+.++++|+.|++++|+
T Consensus 503 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 442 LTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 442 l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+.+.+|...++..+....+.||+.+|+.+
T Consensus 583 l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 583 LHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999888999999999999999864
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=456.65 Aligned_cols=456 Identities=30% Similarity=0.406 Sum_probs=390.6
Q ss_pred CcEEECCCCCCCCccccccc-CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEe
Q 040238 1 LQFLYLRLNNFSGDLLGSIG-NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLA 79 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~ 79 (549)
|++|+|++|.+++.+|..+. ++++|++|+|++|++.+..|. +.+++|++|++++|.+.+..|.. +.++++|++|+
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~ 170 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND--IGSFSSLKVLD 170 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChH--HhcCCCCCEEE
Confidence 68999999999988887654 999999999999999887764 56899999999999999888888 89999999999
Q ss_pred ccCCccceeeccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc
Q 040238 80 LSLNRLSVLTKATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF 158 (549)
Q Consensus 80 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 158 (549)
+++|.+........ .++++|++|++++|.+ ..+|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus 171 L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~ 247 (968)
T PLN00113 171 LGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNN 247 (968)
T ss_pred CccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcCce
Confidence 99997653322222 2689999999999998 57899999999999999999999999999998 99999999999999
Q ss_pred CCCCCCccccccCCCCCccEEEccCCcCCCCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcC
Q 040238 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLL 235 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 235 (549)
+.+..+.. ..... +|+.|++++|.+.+..|.. +++|++|++++|.+.+.+|.++..+++|++|++++|.+.+..
T Consensus 248 l~~~~p~~-l~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 248 LTGPIPSS-LGNLK--NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred eccccChh-HhCCC--CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 88766552 33333 4999999999999888765 789999999999999999999999999999999999999888
Q ss_pred CcchhcCCCCCCeeecCCCccCCcCCCcccc--------------cCCCCccccCCCCCcEEEccCCcCCCCcCcccCCC
Q 040238 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTL 301 (549)
Q Consensus 236 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 301 (549)
|..+..+. +|+.|++++|.+++..|..+.. .+.+|.++..+++|+.|++++|.+.+..|..+..+
T Consensus 325 ~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 325 PVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred ChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 88887665 8999999999999888876643 23456777778889999999999988889899999
Q ss_pred CCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccccccc------------------ccceE
Q 040238 302 PNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIV------------------NTTGI 363 (549)
Q Consensus 302 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~------------------~l~~L 363 (549)
++|+.|++++|.+.+..+..+ ..+++|+.|++++|++.+.+|.. +..+++|+.+ +++.|
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L 480 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL 480 (968)
T ss_pred CCCCEEECcCCEeeeECChhH--hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEE
Confidence 999999999999998876655 78889999999999888776643 3334433322 35789
Q ss_pred EccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCc
Q 040238 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 364 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
++++|++++..|..|..+++|++|++++|.+.+.+|+.+..+++|+.|+|++|.+++.+|..|..+++|+.|++++|+++
T Consensus 481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred ECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-CCCCccCCCccCCCCCCCCCC
Q 040238 444 GLIPPG-KQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 444 ~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+.+|.. ..+..+..+.+.+|+..+.-|
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcceeeCC
Confidence 988864 345566667777776655333
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=319.86 Aligned_cols=392 Identities=22% Similarity=0.187 Sum_probs=175.8
Q ss_pred CEEEccCCcCCccccccccCCC--CCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 26 EAIHIAKCNVSGQITSSLRNLS--QLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 26 ~~L~Ls~n~~~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
+.|+.+++.+..+....+.+.- .-+.||+++|.+....+.. |.++++|+.+++.+|.++.++..... ..+|++|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~--f~nl~nLq~v~l~~N~Lt~IP~f~~~--sghl~~L 130 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEF--FYNLPNLQEVNLNKNELTRIPRFGHE--SGHLEKL 130 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHH--HhcCCcceeeeeccchhhhccccccc--ccceeEE
Confidence 4455555555443333333321 2233555555555333322 55555555555555555555443322 2345555
Q ss_pred EccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEcc
Q 040238 104 GLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLS 182 (549)
Q Consensus 104 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~ 182 (549)
+|.+|.|.++.. .+..++.|+.|||+.|.++......|. .-.++++|+|++|+|+.+....|.. .+. |..|.|+
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~-lns--L~tlkLs 205 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDS-LNS--LLTLKLS 205 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCC--CCCCceEEeeccccccccccccccc-cch--heeeecc
Confidence 555555544442 455555555555555555533333333 3345555555555555544442221 111 3333443
Q ss_pred CCcCCCCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 183 SNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 183 ~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
+|+++...+.. +++|+.|++..|.+...--..|.++++|+.|.|..|.+. .+.+..+..+.++++|+|+.|+++..
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhh
Confidence 33333111000 122222222222222221233445555555555555554 22333222333455555555555433
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
-.+ |+-+++.|+.|++++|.|...-++.....++|++|+|+.|+++...+..+ ..+..|+.|.+++|.
T Consensus 285 n~g----------~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf--~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 285 NEG----------WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF--RVLSQLEELNLSHNS 352 (873)
T ss_pred hcc----------cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH--HHHHHhhhhcccccc
Confidence 222 22344555555555555544444444444555555555555544443333 444455555555554
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccC---chhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCC
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI---PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 416 (549)
+. .+...+|.++++| +.|||++|.+...+ ...|.++++|+.|++.+|++..+...+|.++++||+|||.+|
T Consensus 353 i~-~l~e~af~~lssL-----~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 353 ID-HLAEGAFVGLSSL-----HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hH-HHHhhHHHHhhhh-----hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 33 3344444444444 44444444443322 223444555555555555554333344555555555555555
Q ss_pred cccccCCcCccCCCCCcEEecccCcCcccC
Q 040238 417 KFSGQIPQQLVELTFLEFFNVSDNHLTGLI 446 (549)
Q Consensus 417 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 446 (549)
.|..+.|+.|..+ .|++|-+..-.|.|.|
T Consensus 427 aiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 427 AIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred cceeecccccccc-hhhhhhhcccceEEec
Confidence 5554445555554 4544444444443333
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=315.41 Aligned_cols=387 Identities=20% Similarity=0.200 Sum_probs=317.2
Q ss_pred EEECCCCCCCCcccccccCC--CCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 3 FLYLRLNNFSGDLLGSIGNL--RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
.||.+++.+..+--..+..+ +.-++|++++|.+....+..|.++++|+.+++.+|.++ .+|.- .....+|+.|+|
T Consensus 56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f--~~~sghl~~L~L 132 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF--GHESGHLEKLDL 132 (873)
T ss_pred eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc--cccccceeEEee
Confidence 57777777654322223222 23566899999888888888888999999999888887 66654 455566888999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
.+|.|+.+...... .++.|+.|||+.|.++++|. .|..-.++++|+|++|.++......|. .+.+|..|.|++|++
T Consensus 133 ~~N~I~sv~se~L~-~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 133 RHNLISSVTSEELS-ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSRNRI 209 (873)
T ss_pred eccccccccHHHHH-hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc--ccchheeeecccCcc
Confidence 99888887776554 57888889999988888875 566667889999999998887788887 788888899999998
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCC---CCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCC
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGP---LPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 236 (549)
+..+...| ..... |+.|+|..|++.-. ....+++|+.+.+..|.+...-...|.+|.++++|+|+.|++...-.
T Consensus 210 ttLp~r~F-k~L~~--L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 210 TTLPQRSF-KRLPK--LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred cccCHHHh-hhcch--hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 88877643 22333 88889998887643 34458889999999999988777889999999999999999997777
Q ss_pred cchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccccc
Q 040238 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYG 316 (549)
Q Consensus 237 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 316 (549)
.+++++. .|+.|++++|.|....+++ +.-+++|++|+|++|+++...++.|..+..|++|+|++|++..
T Consensus 287 g~lfgLt-~L~~L~lS~NaI~rih~d~----------WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 287 GWLFGLT-SLEQLDLSYNAIQRIHIDS----------WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred ccccccc-hhhhhccchhhhheeecch----------hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 7777766 8999999999998766544 3678999999999999998888999999999999999999998
Q ss_pred ccCCCCCccCCCCCceeeCCCCccccccCh--hhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCcc
Q 040238 317 IIKEPRTDCGFSKLRIIDLSNNIFIGTLPL--KSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSL 394 (549)
Q Consensus 317 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~--~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 394 (549)
+....+ ..+++|+.||+++|.++..+.. ..|.++++| +.|++.+|++..+.-.+|.++.+|++|||.+|.|
T Consensus 356 l~e~af--~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L-----rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 356 LAEGAF--VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL-----RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred HHhhHH--HHhhhhhhhcCcCCeEEEEEecchhhhccchhh-----hheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 866655 8899999999999999876663 457778888 9999999999988888999999999999999999
Q ss_pred ccCCCcccCCCCCCCEeeCCCCc
Q 040238 395 QGHIPSCLGNLPNLESLDLSNNK 417 (549)
Q Consensus 395 ~~~~~~~~~~l~~L~~L~l~~n~ 417 (549)
..+-|++|..+ .|++|.+..-.
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred eeecccccccc-hhhhhhhcccc
Confidence 98999999998 99999775433
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=290.55 Aligned_cols=431 Identities=24% Similarity=0.323 Sum_probs=235.4
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
.+|++++|+++ ..|++++.+..++.|+.++|+++ ..|+.+..+..|.++++++|.+. ..+.+ ++.+..|+.++..
T Consensus 71 ~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~--i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 71 TVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDS--IGRLLDLEDLDAT 145 (565)
T ss_pred eEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCch--HHHHhhhhhhhcc
Confidence 45555555555 44445556666666666666555 34555666666666666666665 45555 5566666666666
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|+++..+...+ .+.+|..+++.+|++.++|+...+++.|++||...|-+. .+|..++ .+.+|.-|++..|++..
T Consensus 146 ~N~i~slp~~~~--~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg--~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 146 NNQISSLPEDMV--NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELG--GLESLELLYLRRNKIRF 220 (565)
T ss_pred ccccccCchHHH--HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhc--chhhhHHHHhhhccccc
Confidence 666665555433 345566666666666666655555666666666666654 5566665 66666666666666665
Q ss_pred CCCccccccCCCCCccEEEccCCcCCCCCCC----CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCc
Q 040238 162 FDQHLVVLPANKGDLLTFDLSSNNLQGPLPV----PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237 (549)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 237 (549)
.+. +..+.. |+++.++.|++.- +|. .++++..||+..|++. +.|+.+.-+.+|++||+|+|.++ .+|.
T Consensus 221 lPe---f~gcs~--L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~ 292 (565)
T KOG0472|consen 221 LPE---FPGCSL--LKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPY 292 (565)
T ss_pred CCC---CCccHH--HHHHHhcccHHHh-hHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCc
Confidence 542 122333 6666666666542 222 2677788888888887 67888888888999999999888 6777
Q ss_pred chhcCCCCCCeeecCCCccCCcCCCcccc---------------------------cCCCCc----cccCCCCCcEEEcc
Q 040238 238 CLGNSSDELSVLDLQGNNFFGTIPNTFIK---------------------------ERRIPR----SLINCSKLEFLGLG 286 (549)
Q Consensus 238 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---------------------------~~~l~~----~l~~~~~L~~L~l~ 286 (549)
.++.+ .|+.|.+.||.+.+.-.+.+.. ....|. ....+.+.+.|+++
T Consensus 293 sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 293 SLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred ccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence 77776 5888888888765321111110 001111 11224466778888
Q ss_pred CCcCCCCcCcccCCCC--CCCEEEccCcccccccCCCCCccCCCCC-ceeeCCCCccccccChhhhhccccccccccceE
Q 040238 287 NNQISDTFPSWLGTLP--NLNVLILRSNIFYGIIKEPRTDCGFSKL-RIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGI 363 (549)
Q Consensus 287 ~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~l~~L-~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L 363 (549)
+-+++....+.|..-. -.+..+++.|++...+... ..+..+ ..+++++|.+ .+++..+..++.+ ..|
T Consensus 371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L---~~lkelvT~l~lsnn~i--sfv~~~l~~l~kL-----t~L 440 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL---VELKELVTDLVLSNNKI--SFVPLELSQLQKL-----TFL 440 (565)
T ss_pred ccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh---HHHHHHHHHHHhhcCcc--ccchHHHHhhhcc-----eee
Confidence 8777754444333211 2567778887775543221 112222 1233333332 1222334444444 555
Q ss_pred EccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCc
Q 040238 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 364 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
+|++|-+. .+|..++.+..|++|+++.|++. .+|.++..+..++.+-.++|++....|+.+.++.+|.+||+.+|.+.
T Consensus 441 ~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 441 DLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred ecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence 55544443 34444555555555555555554 44444444444444444444444333344444444444444444444
Q ss_pred ccCCCCCCCCccCCCccCCCC
Q 040238 444 GLIPPGKQFATFDNTSFDSNS 464 (549)
Q Consensus 444 ~~~p~~~~~~~~~~~~~~~n~ 464 (549)
...|..+....+..+.+.|||
T Consensus 519 ~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 519 QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hCChhhccccceeEEEecCCc
Confidence 333333334444444444443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-34 Score=279.49 Aligned_cols=363 Identities=26% Similarity=0.377 Sum_probs=206.7
Q ss_pred CCCCEEEccCCcCC-ccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCC
Q 040238 23 RSLEAIHIAKCNVS-GQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLK 101 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 101 (549)
+-.|-.|+++|.++ +..|..+..++.++.|.|...++. .+|.. ++.+.+|++|.+++|++..+..... .++.|+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE--L~~lqkLEHLs~~HN~L~~vhGELs--~Lp~LR 81 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE--LSRLQKLEHLSMAHNQLISVHGELS--DLPRLR 81 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH--HHHHhhhhhhhhhhhhhHhhhhhhc--cchhhH
Confidence 34444555555554 334555555555555555555444 44444 4555555555555554333322211 245555
Q ss_pred EEEccCCCC--CCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 102 YIGLRSCNL--TKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 102 ~L~l~~n~l--~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
.+.+++|++ ..+|..+..+..|+.|||++|++. ..|..+. .-.++-.|+|++|+|.+++...++ .... |-.|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE--~AKn~iVLNLS~N~IetIPn~lfi-nLtD--LLfL 155 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE--YAKNSIVLNLSYNNIETIPNSLFI-NLTD--LLFL 155 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh--hhcCcEEEEcccCccccCCchHHH-hhHh--Hhhh
Confidence 555555555 456666666666666666666665 5555554 455566666666666665555332 2222 5555
Q ss_pred EccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 180 ~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
||++|.+. .+|..+..+..|++|+|++|.+.-..-..+..+. +|+.|++++.+-+-
T Consensus 156 DLS~NrLe----------------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt-sL~vLhms~TqRTl- 211 (1255)
T KOG0444|consen 156 DLSNNRLE----------------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT-SLSVLHMSNTQRTL- 211 (1255)
T ss_pred ccccchhh----------------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch-hhhhhhcccccchh-
Confidence 66655554 5666777888888888888876522112222222 67888888765432
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
..+|..+..+.+|..+|+|.|.+. ..|+.+..+++|+.|+|++|.++...... ..-.+|++|++|.|+
T Consensus 212 --------~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~---~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 212 --------DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE---GEWENLETLNLSRNQ 279 (1255)
T ss_pred --------hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH---HHHhhhhhhccccch
Confidence 245677788889999999999887 67888888899999999999887653221 234466666666666
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcc-cCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS-VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 418 (549)
++ .+| +++..++.| +.|.+.+|.++- -+|..++.+..|+.+..++|.+. ..|+.+..+++|+.|.|+.|++
T Consensus 280 Lt-~LP-~avcKL~kL-----~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 280 LT-VLP-DAVCKLTKL-----TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hc-cch-HHHhhhHHH-----HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 54 233 223444444 444444444421 24444555555555555555554 5555555555555555555555
Q ss_pred cccCCcCccCCCCCcEEecccCc
Q 040238 419 SGQIPQQLVELTFLEFFNVSDNH 441 (549)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~N~ 441 (549)
. .+|+.+.-++.|+.||+..|+
T Consensus 352 i-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 352 I-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred e-echhhhhhcCCcceeeccCCc
Confidence 4 445555555555555555553
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-35 Score=270.54 Aligned_cols=443 Identities=24% Similarity=0.305 Sum_probs=255.5
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.|++++|.++ .+.+.+.++..|.+|++++|++.. .|.+++.+..++.++.++|++. .+|.. +..+..|+.++++
T Consensus 48 ~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~--i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 48 QKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQ--IGSLISLVKLDCS 122 (565)
T ss_pred hhhhhccCchh-hccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHH--Hhhhhhhhhhhcc
Confidence 45666777665 444456677777777777777663 4556677777777777777776 66666 6677777777777
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|.+..+++..+ .+..|+.++..+|+++++|+.+..+.++..+++.+|.+....|. .. +++.|++|+...|.+..
T Consensus 123 ~n~~~el~~~i~--~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i--~m~~L~~ld~~~N~L~t 197 (565)
T KOG0472|consen 123 SNELKELPDSIG--RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN-HI--AMKRLKHLDCNSNLLET 197 (565)
T ss_pred ccceeecCchHH--HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHH-HH--HHHHHHhcccchhhhhc
Confidence 775555544332 35567777777777777777777777777777777777633333 33 56777777777777766
Q ss_pred CCCccccccCCCCCccEEEccCCcCCCCCC-CCCCCcceeecccCCCCCcCchhhh-cCCCCCeEeCcCCcCCCcCCcch
Q 040238 162 FDQHLVVLPANKGDLLTFDLSSNNLQGPLP-VPPPGTIHYLASNNSLTGEIPSWIC-NLNILESLVLSHNNLSGLLPQCL 239 (549)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~ 239 (549)
+++... .... |..|++..|.+..... ..++.|++++++.|.+. .+|.... .++.+..||+..|+++ +.|+.+
T Consensus 198 lP~~lg--~l~~--L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 198 LPPELG--GLES--LELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred CChhhc--chhh--hHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH
Confidence 666522 2222 5666666666552211 12445555555555554 2233322 4555555555555555 445544
Q ss_pred hcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCC--CCCCEEEc--cCccc-
Q 040238 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTL--PNLNVLIL--RSNIF- 314 (549)
Q Consensus 240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L--~~n~l- 314 (549)
.-+. +|++||+++|.+++ +|-.++++ .|+.|-+.+|.+...-.+.++.- .-|++|.= ..-.+
T Consensus 272 clLr-sL~rLDlSNN~is~-----------Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS 338 (565)
T KOG0472|consen 272 CLLR-SLERLDLSNNDISS-----------LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLS 338 (565)
T ss_pred HHhh-hhhhhcccCCcccc-----------CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCC
Confidence 4332 45555555555542 23334455 55555555554432100000000 00000000 00000
Q ss_pred --ccc-------cCCCC-CccCCCCCceeeCCCCccccccChhhhhcccc--ccccc-------------------cceE
Q 040238 315 --YGI-------IKEPR-TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA--MKIVN-------------------TTGI 363 (549)
Q Consensus 315 --~~~-------~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~--l~~~~-------------------l~~L 363 (549)
.+. .+..+ ......+.+.|++++-+++ .+|.+.|..-.. ....+ .+.+
T Consensus 339 ~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l 417 (565)
T KOG0472|consen 339 QSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDL 417 (565)
T ss_pred CCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHH
Confidence 000 00000 0113345566666666654 566666544321 10000 0334
Q ss_pred EccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCc
Q 040238 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 364 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
.+++|.+. -+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|++. .+|.....+..++.+-.++|++.
T Consensus 418 ~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 418 VLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred HhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 44444443 56777889999999999999998 88888999999999999999998 88888888888898889999998
Q ss_pred ccCCCC-CCCCccCCCccCCCCCCCCCCCCCCCCC
Q 040238 444 GLIPPG-KQFATFDNTSFDSNSGLCGRPLSKGCES 477 (549)
Q Consensus 444 ~~~p~~-~~~~~~~~~~~~~n~~lc~~~~~~~c~~ 477 (549)
..-|++ .....+..+....|....-+|.-..|..
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmtn 529 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTN 529 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhhCChhhccccc
Confidence 766652 3344555556666654444454445543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-33 Score=279.73 Aligned_cols=397 Identities=26% Similarity=0.337 Sum_probs=210.4
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|+.||+++|.+. .+|..+..+++|+.|.++.|.|.. .|....++.+|++|.|.+|.++ ..|.. +..+++|++||+
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~--~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPAS--ISELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchh--HHhhhccccccc
Confidence 345566666554 455555555666666666655542 3345555556666666665555 55555 555666666666
Q ss_pred cCCccceeeccCCCcCCCCC-------------------CEEEccCCCC-CCCChhhcCCCCccEEEeecCcCCCCCCcc
Q 040238 81 SLNRLSVLTKATSNTTSQKL-------------------KYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNRIQGKVPKW 140 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L-------------------~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~ 140 (549)
+.|++..++..... +..+ +++++..|.+ ..++..+..+++ .|++++|.+. . -.
T Consensus 122 S~N~f~~~Pl~i~~--lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~d 194 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEV--LTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LD 194 (1081)
T ss_pred chhccCCCchhHHh--hhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hh
Confidence 66555444333211 2222 2222222222 222222222222 2444444432 1 01
Q ss_pred cccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCC-CCCcceeecccCCCCCcCchhhhcCC
Q 040238 141 LLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP-PPGTIHYLASNNSLTGEIPSWICNLN 219 (549)
Q Consensus 141 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~l~ 219 (549)
.. .+++|+.+....|++.... ...++++.|+.+.|.+....+.. +.++++++++.|++.+ +|+|+..+.
T Consensus 195 ls--~~~~l~~l~c~rn~ls~l~-------~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~ 264 (1081)
T KOG0618|consen 195 LS--NLANLEVLHCERNQLSELE-------ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACA 264 (1081)
T ss_pred hh--hccchhhhhhhhcccceEE-------ecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcc
Confidence 11 3334444444444433221 11123777777888777555544 7789999999999985 459999999
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
+|+.++..+|.+. .+|..++... +|+.|.+..|.+. .+|......+.|++|++..|++....+..+.
T Consensus 265 nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~nel~-----------yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 265 NLEALNANHNRLV-ALPLRISRIT-SLVSLSAAYNELE-----------YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred cceEecccchhHH-hhHHHHhhhh-hHHHHHhhhhhhh-----------hCCCcccccceeeeeeehhccccccchHHHh
Confidence 9999999999996 7888777766 7999999999885 3455567788999999999998754333332
Q ss_pred CCC-CCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhh
Q 040238 300 TLP-NLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI 378 (549)
Q Consensus 300 ~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~ 378 (549)
... +|+.|+.+.|.+.... ......++.|+.|.+.+|.+++..-+ .+.+...| +.|+|++|++.......+
T Consensus 332 v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hL-----KVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLTDSCFP-VLVNFKHL-----KVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred hhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCcccccchh-hhccccce-----eeeeecccccccCCHHHH
Confidence 222 2444444444443332 11113334444444444444322211 12222333 444444444444434444
Q ss_pred cCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCc
Q 040238 379 ANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 379 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
.++..|++|+||+|+++ .+|+.+..++.|++|...+|++. ..| .+.+++.|+.+|++.|+++
T Consensus 404 ~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 44444444444444444 34444444444444444444444 333 3444444444444444444
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-32 Score=273.19 Aligned_cols=414 Identities=24% Similarity=0.297 Sum_probs=305.8
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
++|++.+.++ .+|..+..-..++.|+++.|.+-...-+++.+.-+|+.||+++|++. ..|.. +..+.+|+.|+++.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~--it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQ--ITLLSHLRQLNLSR 77 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCch--hhhHHHHhhcccch
Confidence 4678888886 66777766667999999988776555566666777999999999887 77777 78889999999999
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc-CCC
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF-LTG 161 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-~~~ 161 (549)
|.|...+.. ..++.+|+++.|.+|.++.+|..+..+.+|+.|+++.|.+. ..|..+. .+..+..+..++|. +..
T Consensus 78 n~i~~vp~s--~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~--~lt~~~~~~~s~N~~~~~ 152 (1081)
T KOG0618|consen 78 NYIRSVPSS--CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIE--VLTAEEELAASNNEKIQR 152 (1081)
T ss_pred hhHhhCchh--hhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHH--hhhHHHHHhhhcchhhhh
Confidence 988877732 22688899999999999999999999999999999999886 6777666 77777777777772 221
Q ss_pred CCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcce-eecccCCCCCcCchhhhcC--------------------CC
Q 040238 162 FDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIH-YLASNNSLTGEIPSWICNL--------------------NI 220 (549)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~-L~l~~n~~~~~~~~~l~~l--------------------~~ 220 (549)
.... .++++++..|.+.+.++.....+++ +++..|.+... .+..+ ++
T Consensus 153 lg~~---------~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~ 220 (1081)
T KOG0618|consen 153 LGQT---------SIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPS 220 (1081)
T ss_pred hccc---------cchhhhhhhhhcccchhcchhhhheeeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcc
Confidence 1111 1556666666666655555444544 56666655411 11222 45
Q ss_pred CCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC
Q 040238 221 LESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT 300 (549)
Q Consensus 221 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 300 (549)
|+.|+.++|.+....+.. .+.+|++++++.|+++ .+|+|+..+.+|+.++..+|.++ .+|..+..
T Consensus 221 l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~-----------~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~ 285 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLS-----------NLPEWIGACANLEALNANHNRLV-ALPLRISR 285 (1081)
T ss_pred hheeeeccCcceeecccc---ccccceeeecchhhhh-----------cchHHHHhcccceEecccchhHH-hhHHHHhh
Confidence 566666666665222211 2236777777777775 46788888999999999999985 67777778
Q ss_pred CCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccc-cccc-------------------cc
Q 040238 301 LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA-MKIV-------------------NT 360 (549)
Q Consensus 301 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~-l~~~-------------------~l 360 (549)
..+|+.|....|.+..+.+.. .++..|++||+..|++. .+|...|..... +..+ .+
T Consensus 286 ~~~L~~l~~~~nel~yip~~l---e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNELEYIPPFL---EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAAL 361 (1081)
T ss_pred hhhHHHHHhhhhhhhhCCCcc---cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHH
Confidence 888899999888887764432 56889999999999975 566554433322 1111 23
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.|++.+|.++...-+.+.++++|+.|+|++|++.......+.+++.|++|+||+|+++ .+|..+..++.|++|...+|
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCC
Confidence 78999999999998889999999999999999999666667899999999999999999 88899999999999999999
Q ss_pred cCcccCCCCCCCCccCCC
Q 040238 441 HLTGLIPPGKQFATFDNT 458 (549)
Q Consensus 441 ~l~~~~p~~~~~~~~~~~ 458 (549)
++.+. |+..++..++.+
T Consensus 441 ~l~~f-Pe~~~l~qL~~l 457 (1081)
T KOG0618|consen 441 QLLSF-PELAQLPQLKVL 457 (1081)
T ss_pred ceeec-hhhhhcCcceEE
Confidence 99854 554444444433
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-31 Score=253.21 Aligned_cols=357 Identities=26% Similarity=0.362 Sum_probs=269.7
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccc-cCchhhcCCCCCCCeEec
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGT-IKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~L 80 (549)
+-|-|...++. .+|+.++.+.+|++|.+++|++.... ..+..++.|+.+.+..|++... +|.+ +..+..|.+|||
T Consensus 35 ~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~d--iF~l~dLt~lDL 110 (1255)
T KOG0444|consen 35 TWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTD--IFRLKDLTILDL 110 (1255)
T ss_pred eEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCch--hcccccceeeec
Confidence 34566666776 67889999999999999999987543 5678899999999999988643 5666 678999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
|+|++...+.... .-.++-.|+|++|+|.+||. -+.+++.|-.|||++|++. .+|.-.. .+..|++|.|++|.+
T Consensus 111 ShNqL~EvP~~LE--~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~R--RL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 111 SHNQLREVPTNLE--YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIR--RLSMLQTLKLSNNPL 185 (1255)
T ss_pred chhhhhhcchhhh--hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHH--HHhhhhhhhcCCChh
Confidence 9998887766533 35678899999999999997 5678899999999999987 6676666 788999999999876
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCC-CcCchhhhcCCCCCeEeCcCCcCCCcCCcc
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLT-GEIPSWICNLNILESLVLSHNNLSGLLPQC 238 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 238 (549)
...... .| .++.+|+.|.+++.+-+ ..+|..+.++.+|..+|+|.|.+. .+|.+
T Consensus 186 ~hfQLr------------QL------------PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 186 NHFQLR------------QL------------PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hHHHHh------------cC------------ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 532211 00 01233444444443322 367888999999999999999998 88999
Q ss_pred hhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccccccc
Q 040238 239 LGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGII 318 (549)
Q Consensus 239 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 318 (549)
+..+. +|+.|+|++|.++... .....-.+|++|++|.|+++ .+|.++..++.|+.|.+.+|.+.-.
T Consensus 241 ly~l~-~LrrLNLS~N~iteL~-----------~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~Fe- 306 (1255)
T KOG0444|consen 241 LYKLR-NLRRLNLSGNKITELN-----------MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFE- 306 (1255)
T ss_pred Hhhhh-hhheeccCcCceeeee-----------ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccccc-
Confidence 88876 8999999999997432 22344568999999999998 7888899999999999999886422
Q ss_pred CCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCC
Q 040238 319 KEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHI 398 (549)
Q Consensus 319 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 398 (549)
..+.+.+.+.+|+.+..++|.+ +..|+.+..+..|+.|.|+.|++. .+
T Consensus 307 GiPSGIGKL~~Levf~aanN~L-------------------------------ElVPEglcRC~kL~kL~L~~NrLi-TL 354 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKL-------------------------------ELVPEGLCRCVKLQKLKLDHNRLI-TL 354 (1255)
T ss_pred CCccchhhhhhhHHHHhhcccc-------------------------------ccCchhhhhhHHHHHhccccccee-ec
Confidence 1122336666777666666654 267888899999999999999998 78
Q ss_pred CcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecc
Q 040238 399 PSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVS 438 (549)
Q Consensus 399 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 438 (549)
|+++.-++.|+.||+.+|.-.-..|..-..-.+|+.-+++
T Consensus 355 PeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 9999999999999999997663333322222455555544
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-23 Score=230.52 Aligned_cols=346 Identities=20% Similarity=0.202 Sum_probs=197.2
Q ss_pred cccccCCCCCCEEEccCCcC------CccccccccCCC-CCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCcccee
Q 040238 16 LGSIGNLRSLEAIHIAKCNV------SGQITSSLRNLS-QLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVL 88 (549)
Q Consensus 16 ~~~~~~l~~L~~L~Ls~n~~------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 88 (549)
+.+|.++++|+.|.+..+.. ....|+.|..++ +|+.|++.++.+. .+|.. | ...+|+.|++++|.+..+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~--f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSN--F-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCc--C-CccCCcEEECcCcccccc
Confidence 34466666666666654321 122344454443 4666666666655 55544 3 345666666666655554
Q ss_pred eccCCCcCCCCCCEEEccCCC-CCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc-CCCCCCcc
Q 040238 89 TKATSNTTSQKLKYIGLRSCN-LTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF-LTGFDQHL 166 (549)
Q Consensus 89 ~~~~~~~~~~~L~~L~l~~n~-l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~ 166 (549)
.... ..+++|+.|+++++. +..+|. +..+++|++|++++|.....+|..+. .+++|+.|++++|. +..++...
T Consensus 627 ~~~~--~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 627 WDGV--HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQ--YLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred cccc--ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhh--ccCCCCEEeCCCCCCcCccCCcC
Confidence 3322 245666666666653 355553 55566666666666654445566555 66666666666543 22222211
Q ss_pred ccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCC
Q 040238 167 VVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDEL 246 (549)
Q Consensus 167 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 246 (549)
. .++|+.|++++|.....+|... ++|++|++++|.+. .+|..+ . .++|
T Consensus 702 ---~--l~sL~~L~Lsgc~~L~~~p~~~------------------------~nL~~L~L~~n~i~-~lP~~~-~-l~~L 749 (1153)
T PLN03210 702 ---N--LKSLYRLNLSGCSRLKSFPDIS------------------------TNISWLDLDETAIE-EFPSNL-R-LENL 749 (1153)
T ss_pred ---C--CCCCCEEeCCCCCCcccccccc------------------------CCcCeeecCCCccc-cccccc-c-cccc
Confidence 1 1225555555554333333333 34555555555554 344332 1 2245
Q ss_pred CeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccC
Q 040238 247 SVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCG 326 (549)
Q Consensus 247 ~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 326 (549)
++|++.++....... .+. ...+.....+++|+.|++++|.....+|..++.+++|+.|++++|...+..|... .
T Consensus 750 ~~L~l~~~~~~~l~~-~~~--~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~ 823 (1153)
T PLN03210 750 DELILCEMKSEKLWE-RVQ--PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---N 823 (1153)
T ss_pred ccccccccchhhccc-ccc--ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---C
Confidence 555555432211000 000 0001112234678888888887666778788888888888888875444333322 5
Q ss_pred CCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCC
Q 040238 327 FSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLP 406 (549)
Q Consensus 327 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 406 (549)
+++|+.|++++|.....+|.. .. +++.|++++|.++ .+|..+..+++|++|++++|+-...+|..+..++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~----~~-----nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI----ST-----NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred ccccCEEECCCCCcccccccc----cc-----ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 778888888887655444421 12 3378888888887 4677788888999999988654446777778888
Q ss_pred CCCEeeCCCCcc
Q 040238 407 NLESLDLSNNKF 418 (549)
Q Consensus 407 ~L~~L~l~~n~l 418 (549)
+|+.+++++|.-
T Consensus 894 ~L~~L~l~~C~~ 905 (1153)
T PLN03210 894 HLETVDFSDCGA 905 (1153)
T ss_pred CCCeeecCCCcc
Confidence 888899888853
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-27 Score=214.12 Aligned_cols=390 Identities=22% Similarity=0.194 Sum_probs=205.7
Q ss_pred CCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC-CccceeeccCCCcCCCCCCEE
Q 040238 25 LEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL-NRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 25 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~~L 103 (549)
-..+.|..|.|+.+.+.+|+.+++|+.|||++|.|+...|.. |..++.|..|-+-+ |+|+.++...+. .+..|+.|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A--F~GL~~l~~Lvlyg~NkI~~l~k~~F~-gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA--FKGLASLLSLVLYGNNKITDLPKGAFG-GLSSLQRL 145 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh--hhhhHhhhHHHhhcCCchhhhhhhHhh-hHHHHHHH
Confidence 445555555555555555555555555555555555444444 55555544433332 555555554443 35555555
Q ss_pred EccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCcccc-----------ccC
Q 040238 104 GLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVV-----------LPA 171 (549)
Q Consensus 104 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----------~~~ 171 (549)
.+.-|++.-++. .|..++++..|.+.+|.+....-..|. .+.+++.+.+..|.+...-.-.+. ...
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~--~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQ--GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhcccccc--chhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 555555544332 455555555555555555432233444 455555555555442211000000 000
Q ss_pred CCCCccEEEccCCcCCCCCCCC-CCCccee---ecccCCCCCcCc-hhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCC
Q 040238 172 NKGDLLTFDLSSNNLQGPLPVP-PPGTIHY---LASNNSLTGEIP-SWICNLNILESLVLSHNNLSGLLPQCLGNSSDEL 246 (549)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~-~~~L~~L---~l~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 246 (549)
.. .....+.+.++....+.. ..+++.+ ..+.+.+.++-| ..|.++++|++|++++|.+++.-+.+|.... .+
T Consensus 224 rc--~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-~l 300 (498)
T KOG4237|consen 224 RC--VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA-EL 300 (498)
T ss_pred ee--cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh-hh
Confidence 00 001111111111111111 1111111 222333333333 4578899999999999999866666665555 79
Q ss_pred CeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccC-------
Q 040238 247 SVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK------- 319 (549)
Q Consensus 247 ~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------- 319 (549)
++|.|..|++....... |.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++--...
T Consensus 301 ~eL~L~~N~l~~v~~~~----------f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGM----------FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred hhhhcCcchHHHHHHHh----------hhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH
Confidence 99999999886544333 4778888999999999998888888888899999988876632110
Q ss_pred ------CCCCc-cCCCCCceeeCCCCcccc---ccChhhhhcccccccc----cc-ceEEccCCcCcccCchhhcCCCCC
Q 040238 320 ------EPRTD-CGFSKLRIIDLSNNIFIG---TLPLKSFLCWNAMKIV----NT-TGIILSNNSFDSVIPASIANLKGL 384 (549)
Q Consensus 320 ------~~~~~-~~l~~L~~L~ls~n~l~~---~~~~~~~~~l~~l~~~----~l-~~L~l~~n~l~~~~~~~~~~l~~L 384 (549)
..... .....++.+++++..+.. ..|.+ ....+.-..+ -+ +....|+..++ .+|..+ ...-
T Consensus 371 lr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee-~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P~d~ 446 (498)
T KOG4237|consen 371 LRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEE-LGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI--PVDV 446 (498)
T ss_pred HhhCCCCCCCCCCCCchhccccchhccccccccCCccc-cCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC--Cchh
Confidence 00000 122345555555544321 11111 0000000000 00 22233333333 222211 1345
Q ss_pred CEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 385 QVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 385 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
.+|++.+|.+. .+|+. .+.+| .+|+++|+++..--..|.++++|.+|-+++|
T Consensus 447 telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 447 TELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 67888899888 66665 56677 8899999988666678888888888888876
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=223.47 Aligned_cols=336 Identities=21% Similarity=0.231 Sum_probs=212.9
Q ss_pred ccccCCCCCCEEeCCCCcC------ccccCchhhcCCC-CCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCC
Q 040238 41 SSLRNLSQLFFLDLAKNSY------RGTIKLDVLLTSW-KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF 113 (549)
Q Consensus 41 ~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l 113 (549)
.+|.++++|+.|.+..+.. ...+|.. +..+ .+|+.|++.++.+..++... .+.+|++|++++|.+..+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~--~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG--FDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcc--hhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcCcccccc
Confidence 4455555555555543321 1122222 2222 23555555554443333321 234455555555555444
Q ss_pred ChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCC
Q 040238 114 PNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP 193 (549)
Q Consensus 114 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 193 (549)
+..+..+++|+.|+++++.....+|. +. .+++|+ .|++++|.....+|..
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls--~l~~Le---------------------------~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LS--MATNLE---------------------------TLKLSDCSSLVELPSS 676 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cc--cCCccc---------------------------EEEecCCCCccccchh
Confidence 44444455555555554432223332 22 344444 4444444433333332
Q ss_pred ---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCC
Q 040238 194 ---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI 270 (549)
Q Consensus 194 ---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l 270 (549)
+++|+.|++++|.....+|..+ .+++|+.|++++|...+.+|.. ..+|++|++++|.+.. +
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-----------l 740 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-----------F 740 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-----------c
Confidence 4556666666655444566544 6889999999999766566643 3479999999998753 2
Q ss_pred CccccCCCCCcEEEccCCcCC-------CCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccc
Q 040238 271 PRSLINCSKLEFLGLGNNQIS-------DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGT 343 (549)
Q Consensus 271 ~~~l~~~~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 343 (549)
|..+ .+++|++|++.++... ...+..+...++|+.|++++|...+..|..+ .++++|+.|++++|...+.
T Consensus 741 P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 741 PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLET 817 (1153)
T ss_pred cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCe
Confidence 3333 4678888888874322 1112223345789999999998766666554 7899999999999877777
Q ss_pred cChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCC
Q 040238 344 LPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIP 423 (549)
Q Consensus 344 ~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 423 (549)
+|... .+++| +.|++++|......|.. .++|+.|++++|.+. .+|..+..+++|+.|++++|.-...+|
T Consensus 818 LP~~~--~L~sL-----~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 818 LPTGI--NLESL-----ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred eCCCC--Ccccc-----CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccC
Confidence 77543 34444 99999998765555543 468999999999998 788899999999999999975555688
Q ss_pred cCccCCCCCcEEecccCc
Q 040238 424 QQLVELTFLEFFNVSDNH 441 (549)
Q Consensus 424 ~~~~~l~~L~~L~l~~N~ 441 (549)
..+..+++|+.+++++|.
T Consensus 887 ~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 887 LNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccccCCCeeecCCCc
Confidence 888899999999999994
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=203.17 Aligned_cols=260 Identities=27% Similarity=0.352 Sum_probs=125.4
Q ss_pred CCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 100 LKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 100 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
-..|+++++.++++|..+. .+|+.|++.+|+++ .+|. .+++|++|++++|+++.++.. . ++|+.|
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~-----lp~~Lk~LdLs~N~LtsLP~l-----p--~sL~~L 267 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPVL-----P--PGLLEL 267 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC-----CCCCCcEEEecCCccCcccCc-----c--ccccee
Confidence 4456666666666665443 35666666666665 3332 235566666666666554321 0 125566
Q ss_pred EccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 180 ~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
+++.|.+.. +|..+.+|+.|++++|.+.. +|. ..++|+.|++++|.+.+ +|.. +..|+.|++++|.+++.
T Consensus 268 ~Ls~N~L~~-Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 268 SIFSNPLTH-LPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTSL 337 (788)
T ss_pred eccCCchhh-hhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC----cccccccccccCccccc
Confidence 666555542 22223344444444444432 222 12345555555555442 2321 12344455555544321
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
|. ...+|+.|++++|+++. +|.. .++|+.|++++|.+..+.. ...+|
T Consensus 338 -----------P~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~------l~~~L--------- 384 (788)
T PRK15387 338 -----------PT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA------LPSGL--------- 384 (788)
T ss_pred -----------cc---cccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc------ccccc---------
Confidence 10 01244455555555442 2211 1234444444444443211 11233
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++
T Consensus 385 ---------------------~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 385 ---------------------KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT 435 (788)
T ss_pred ---------------------ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc
Confidence 445555555543 2221 245666666666666 34432 235666666766666
Q ss_pred ccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 420 GQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
.+|..+.++++|+.|++++|+|++..|
T Consensus 436 -~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 436 -RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -ccChHHhhccCCCeEECCCCCCCchHH
Confidence 556666666667777777776665544
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-23 Score=191.03 Aligned_cols=236 Identities=25% Similarity=0.268 Sum_probs=126.9
Q ss_pred CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeee-cCCCccCCcCCCcccccCCCCc
Q 040238 194 PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLD-LQGNNFFGTIPNTFIKERRIPR 272 (549)
Q Consensus 194 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~-L~~n~l~~~~~~~~~~~~~l~~ 272 (549)
++....+++..|.|+...+.+|..+++|+.||||+|.|+...|.+|.++. ++..|. +++|+|+......|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F-------- 136 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAF-------- 136 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHh--------
Confidence 44555555666666655556666666666666666666655555554444 333333 33356654444443
Q ss_pred cccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc-------------
Q 040238 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI------------- 339 (549)
Q Consensus 273 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~------------- 339 (549)
.++.+++.|.+.-|++.....+.|+.+++|..|.+.+|.+..+....+ ..+.+++.+.+..|.
T Consensus 137 --~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf--~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 137 --GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF--QGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred --hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc--cchhccchHhhhcCccccccccchhhhH
Confidence 334444444444444444334444444444444444444433332222 333333333333332
Q ss_pred ------------------------------------------------cccccChhhhhccccccccccceEEccCCcCc
Q 040238 340 ------------------------------------------------FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD 371 (549)
Q Consensus 340 ------------------------------------------------l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~ 371 (549)
..+..|..+|..+++| +.|+|++|.++
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L-----~~lnlsnN~i~ 287 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL-----RKLNLSNNKIT 287 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc-----eEeccCCCccc
Confidence 2334455555555555 66666666666
Q ss_pred ccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 372 SVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 372 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
++.+.+|.++.++++|.|..|++...-..+|.++..|+.|+|.+|+|+..-|..|..+.+|.+|++-.|+|.|.+-
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 6666666666666666666666664445566666666666666666666666666666666666666666665543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=200.78 Aligned_cols=191 Identities=24% Similarity=0.277 Sum_probs=104.4
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
.||++++.++ .+|..+. ++|+.|++++|+++.+ |. ..++|++|++++|+++ .+|.. .++|+.|++++
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~l-----p~sL~~L~Ls~ 271 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPVL-----PPGLLELSIFS 271 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccCc-----ccccceeeccC
Confidence 5677777776 4555554 3677777777776643 32 2466777777777766 33421 24666777777
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCC
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGF 162 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 162 (549)
|.++.++.. ..+|+.|++++|+++.+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.+..+
T Consensus 272 N~L~~Lp~l-----p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l-----p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 272 NPLTHLPAL-----PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL-----PSELCKLWAYNNQLTSL 337 (788)
T ss_pred Cchhhhhhc-----hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC-----cccccccccccCccccc
Confidence 766655442 24566677777766666642 3456677777776653 3332 23456666666666554
Q ss_pred CCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCC
Q 040238 163 DQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS 232 (549)
Q Consensus 163 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 232 (549)
+.. . .+|+.|++++|.++. +|..+++|+.|++++|.+.. +|.. ..+|+.|++++|.+.
T Consensus 338 P~l-----p--~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 338 PTL-----P--SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred ccc-----c--cccceEecCCCccCC-CCCCCcccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence 321 0 126666666666653 33334444555555554442 2221 123444555554444
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-19 Score=183.83 Aligned_cols=246 Identities=24% Similarity=0.375 Sum_probs=135.4
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
+...|++++++++.. |..+. ++|+.|++++|.++ .+|.. +. .+|++|++++|.++.++... ..+|+.|
T Consensus 179 ~~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~Lt-sLP~~--l~--~nL~~L~Ls~N~LtsLP~~l----~~~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACIP--EQITTLILDNNELK-SLPEN--LQ--GNIKTLYANSNQLTSIPATL----PDTIQEM 246 (754)
T ss_pred CceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCC-cCChh--hc--cCCCEEECCCCccccCChhh----hccccEE
Confidence 345566666555532 33221 35666666666665 44433 11 35666666666555443321 2356666
Q ss_pred EccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccC
Q 040238 104 GLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSS 183 (549)
Q Consensus 104 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~ 183 (549)
++++|.+..+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++.++... + ..|+.|++++
T Consensus 247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~----~sL~~L~Ls~N~Lt~LP~~l---p---~sL~~L~Ls~ 313 (754)
T PRK15370 247 ELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP----EELRYLSVYDNSIRTLPAHL---P---SGITHLNVQS 313 (754)
T ss_pred ECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC----CCCcEEECCCCccccCcccc---h---hhHHHHHhcC
Confidence 666666666665443 35666666666665 3444331 35666666666666544321 0 1266666666
Q ss_pred CcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCc
Q 040238 184 NNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNT 263 (549)
Q Consensus 184 n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 263 (549)
|.+....+..+++|+.|++++|.+++ +|..+. ++|+.|++++|.+. .+|..+. ++|++|++++|.++..
T Consensus 314 N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt~L---- 382 (754)
T PRK15370 314 NSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALTNL---- 382 (754)
T ss_pred CccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCCCC----
Confidence 66654322234566666666666654 444332 56777777777776 4555432 3677777777776532
Q ss_pred ccccCCCCccccCCCCCcEEEccCCcCCCCcCc----ccCCCCCCCEEEccCcccc
Q 040238 264 FIKERRIPRSLINCSKLEFLGLGNNQISDTFPS----WLGTLPNLNVLILRSNIFY 315 (549)
Q Consensus 264 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~ 315 (549)
|..+. ..|+.|++++|++.. +|. .+..++.+..+++.+|++.
T Consensus 383 -------P~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 -------PENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -------CHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 22221 256777777777763 333 2334566777777777664
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=182.12 Aligned_cols=138 Identities=23% Similarity=0.346 Sum_probs=63.7
Q ss_pred CCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccE
Q 040238 99 KLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178 (549)
Q Consensus 99 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~ 178 (549)
+...|++++++++.+|..+. ++++.|++++|.++ .+|..+ .++|+.|++++|++..++... .. .|+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l----~~nL~~L~Ls~N~LtsLP~~l----~~--~L~~ 245 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENL----QGNIKTLYANSNQLTSIPATL----PD--TIQE 245 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhh----ccCCCEEECCCCccccCChhh----hc--cccE
Confidence 34556666666655555432 35666666666665 344432 235666666666555443221 01 2555
Q ss_pred EEccCCcCCCCCCCC-CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccC
Q 040238 179 FDLSSNNLQGPLPVP-PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFF 257 (549)
Q Consensus 179 L~L~~n~l~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 257 (549)
|++++|.+.. +|.. ..+|+.|++++|.+. .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++
T Consensus 246 L~Ls~N~L~~-LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 246 MELSINRITE-LPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT 317 (754)
T ss_pred EECcCCccCc-CChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc
Confidence 5555555542 2211 233444444444443 2233221 24555555555544 2333221 23555555555544
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-19 Score=172.20 Aligned_cols=283 Identities=22% Similarity=0.190 Sum_probs=173.3
Q ss_pred EEECCCCCCC-CcccccccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCcc------ccCchhhcCC
Q 040238 3 FLYLRLNNFS-GDLLGSIGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRG------TIKLDVLLTS 71 (549)
Q Consensus 3 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~~~ 71 (549)
.|+|.++.++ +.....|..+++|++|+++++.++.. ++..+...+.+++++++++.+.+ .++. .+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~--~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ--GLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH--HHHh
Confidence 5889999887 34556677888899999999998543 45667788889999999988762 1122 3677
Q ss_pred CCCCCeEeccCCccceeeccCCCcCC---CCCCEEEccCCCCCC-----CChhhcCC-CCccEEEeecCcCCCCC----C
Q 040238 72 WKNLEFLALSLNRLSVLTKATSNTTS---QKLKYIGLRSCNLTK-----FPNFLQNQ-YHLLVLDLSDNRIQGKV----P 138 (549)
Q Consensus 72 l~~L~~L~Ls~n~i~~~~~~~~~~~~---~~L~~L~l~~n~l~~-----l~~~l~~l-~~L~~L~l~~n~l~~~~----~ 138 (549)
+++|++|++++|.+......... .+ ++|++|++++|.++. +...+..+ ++|+.|++++|.+++.. +
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 89999999999977632222111 22 459999999998852 33355666 89999999999988432 3
Q ss_pred cccccccCCCCcEEEccCCcCCCCCCcccc-ccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhc
Q 040238 139 KWLLDPNMQNLNALNISHNFLTGFDQHLVV-LPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICN 217 (549)
Q Consensus 139 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 217 (549)
..+. .+++|++|++++|.+.+....... .....++|+.|++++|.+.+... ..+...+..
T Consensus 159 ~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----------------~~l~~~~~~ 219 (319)
T cd00116 159 KALR--ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-----------------SALAETLAS 219 (319)
T ss_pred HHHH--hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-----------------HHHHHHhcc
Confidence 3444 678999999999988752211000 00111236666666655431100 112334455
Q ss_pred CCCCCeEeCcCCcCCCcCCcchhcC----CCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCC
Q 040238 218 LNILESLVLSHNNLSGLLPQCLGNS----SDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDT 293 (549)
Q Consensus 218 l~~L~~L~Ls~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~ 293 (549)
+++|++|++++|.+.+.....+... .+.|++|++++|.++..... .+...+..+++|+++++++|.+...
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~------~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK------DLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH------HHHHHHhcCCCccEEECCCCCCcHH
Confidence 6777777777777664333222222 13577777777766522111 1123334456677777777766643
Q ss_pred ----cCcccCCC-CCCCEEEccCcc
Q 040238 294 ----FPSWLGTL-PNLNVLILRSNI 313 (549)
Q Consensus 294 ----~~~~~~~l-~~L~~L~L~~n~ 313 (549)
....+... +.|+.+++.+|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 294 GAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHhhcCCchhhcccCCCC
Confidence 22222223 455555555553
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-19 Score=171.69 Aligned_cols=61 Identities=30% Similarity=0.418 Sum_probs=35.1
Q ss_pred CCCCEEEccCCcccc----CCCcccCCCCCCCEeeCCCCccccc----CCcCccCC-CCCcEEecccCcC
Q 040238 382 KGLQVLNLQNNSLQG----HIPSCLGNLPNLESLDLSNNKFSGQ----IPQQLVEL-TFLEFFNVSDNHL 442 (549)
Q Consensus 382 ~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~N~l 442 (549)
+.|++|++++|.++. .+...+..+++|+.+++++|.++.. ....+... +.|+.+++.+|+|
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 567777777776651 2233445556777777777777643 22223333 5667777766654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-18 Score=140.07 Aligned_cols=179 Identities=28% Similarity=0.544 Sum_probs=105.8
Q ss_pred cCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCc
Q 040238 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS 296 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~ 296 (549)
++..++.|.+|+|+++ .+|..+..+. +|+.|++.+|++. ++|.+++.+++|+.|+++-|++. ..|.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~-nlevln~~nnqie-----------~lp~~issl~klr~lnvgmnrl~-~lpr 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELK-NLEVLNLSNNQIE-----------ELPTSISSLPKLRILNVGMNRLN-ILPR 96 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhh-hhhhhhcccchhh-----------hcChhhhhchhhhheecchhhhh-cCcc
Confidence 4555666666676666 5555555544 5666666666663 34555556666666666666554 4555
Q ss_pred ccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCch
Q 040238 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPA 376 (549)
Q Consensus 297 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~ 376 (549)
.|+.+|.|+.|++..|.+ ....-++-|..++.+ +.|+|++|.+. .+|.
T Consensus 97 gfgs~p~levldltynnl--------------------------~e~~lpgnff~m~tl-----ralyl~dndfe-~lp~ 144 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNL--------------------------NENSLPGNFFYMTTL-----RALYLGDNDFE-ILPP 144 (264)
T ss_pred ccCCCchhhhhhcccccc--------------------------ccccCCcchhHHHHH-----HHHHhcCCCcc-cCCh
Confidence 555555555555555544 221112224444444 55566666665 5566
Q ss_pred hhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCC---CCcEEecccCcCc
Q 040238 377 SIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT---FLEFFNVSDNHLT 443 (549)
Q Consensus 377 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l~~N~l~ 443 (549)
.++.+++|+.|.+..|.+. .+|..++.+++|++|++.+|+++ .+|..++++. +=+.+.+.+|+|.
T Consensus 145 dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred hhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 6777888888888888777 67777778888888888888877 5555444432 2233444455544
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-18 Score=137.99 Aligned_cols=156 Identities=22% Similarity=0.317 Sum_probs=127.2
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.|.||+|.++ .+|.-+..+.+|+.|++++|.+. ..|..+..+++|++|+++-|++. ..|.. |+.++.|++||++
T Consensus 36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg--fgs~p~levldlt 110 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG--FGSFPALEVLDLT 110 (264)
T ss_pred hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc--cCCCchhhhhhcc
Confidence 45778888887 55667888899999999998887 45678888999999999888887 77877 8899999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|.+..-.-.-.++.+..|+.|++++|.++-+|..++++++|+.|.++.|.+- .+|..+. .++.|++|.+.+|+++.
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig--~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIG--DLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHH--HHHHHHHHhcccceeee
Confidence 88765433222223677888889999999888988999999999999988876 7788887 88889999999998888
Q ss_pred CCCc
Q 040238 162 FDQH 165 (549)
Q Consensus 162 ~~~~ 165 (549)
.++.
T Consensus 188 lppe 191 (264)
T KOG0617|consen 188 LPPE 191 (264)
T ss_pred cChh
Confidence 7777
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=158.03 Aligned_cols=117 Identities=39% Similarity=0.700 Sum_probs=103.2
Q ss_pred cceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 360 TTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 360 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCCCCCC--CCccCCCccCCCCCCCCCCCCCCCC
Q 040238 440 NHLTGLIPPGKQ--FATFDNTSFDSNSGLCGRPLSKGCE 476 (549)
Q Consensus 440 N~l~~~~p~~~~--~~~~~~~~~~~n~~lc~~~~~~~c~ 476 (549)
|+++|.+|.... ........+.+|+.+|+.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999996521 2233456788999999877555563
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-13 Score=128.22 Aligned_cols=143 Identities=29% Similarity=0.292 Sum_probs=94.7
Q ss_pred cCCCCCCEEEccCCcCCcccc-ccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCC
Q 040238 20 GNLRSLEAIHIAKCNVSGQIT-SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQ 98 (549)
Q Consensus 20 ~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 98 (549)
+++++|+...|.++.+..... +-...|++++.|||++|-+..-.+...+...+++|+.|+++.|++...........++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467888888888887663221 3566788888888888887755555556778888888888888766554444333677
Q ss_pred CCCEEEccCCCCC--CCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCC
Q 040238 99 KLKYIGLRSCNLT--KFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ 164 (549)
Q Consensus 99 ~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 164 (549)
+|+.|.++.|.++ .+-..+..+++|+.|++.+|.....-..... .+..|+.|+|++|.+...+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~--i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK--ILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh--hhhHHhhccccCCccccccc
Confidence 7888888888773 2333455667777777777742212222222 55667777777776665543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-11 Score=127.48 Aligned_cols=113 Identities=34% Similarity=0.471 Sum_probs=102.6
Q ss_pred CCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCC
Q 040238 329 KLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNL 408 (549)
Q Consensus 329 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 408 (549)
.++.|++++|.+.+.+|.. +..+++| +.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.++.+++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L-----~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHL-----QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCC-----CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 4788999999999999865 7777777 999999999999999999999999999999999999999999999999
Q ss_pred CEeeCCCCcccccCCcCccCC-CCCcEEecccCcCcccCC
Q 040238 409 ESLDLSNNKFSGQIPQQLVEL-TFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 409 ~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p 447 (549)
+.|+|++|++++.+|..+... .++..+++++|+..|..|
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999999999988764 567899999998877665
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-13 Score=131.69 Aligned_cols=192 Identities=27% Similarity=0.333 Sum_probs=124.5
Q ss_pred CCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEc
Q 040238 75 LEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNI 154 (549)
Q Consensus 75 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L 154 (549)
-...|++.|++..++..... +..|+.+.+..|.+..+|..+.++..|+.||++.|+++ ..|..++ .+ -|+.|.+
T Consensus 77 t~~aDlsrNR~~elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~l-pLkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DL-PLKVLIV 150 (722)
T ss_pred hhhhhccccccccCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhh--cC-cceeEEE
Confidence 34556666666555554332 34566666666666666666666666666666666665 5555443 23 3666666
Q ss_pred cCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCc
Q 040238 155 SHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 234 (549)
++|+++..+.... .... |..||.+.|.+. .+|..+.++..|+.|.+..|.+. .
T Consensus 151 sNNkl~~lp~~ig--~~~t--l~~ld~s~nei~----------------------slpsql~~l~slr~l~vrRn~l~-~ 203 (722)
T KOG0532|consen 151 SNNKLTSLPEEIG--LLPT--LAHLDVSKNEIQ----------------------SLPSQLGYLTSLRDLNVRRNHLE-D 203 (722)
T ss_pred ecCccccCCcccc--cchh--HHHhhhhhhhhh----------------------hchHHhhhHHHHHHHHHhhhhhh-h
Confidence 6666666555422 1211 555555555554 67788888999999999999888 6
Q ss_pred CCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC---CCCCCEEEccC
Q 040238 235 LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT---LPNLNVLILRS 311 (549)
Q Consensus 235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~ 311 (549)
+|..+..++ |..||++.|+++ .+|..|.+|+.|++|-|.+|.++. .|..+.. ..=.++|+...
T Consensus 204 lp~El~~Lp--Li~lDfScNkis-----------~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 204 LPEELCSLP--LIRLDFSCNKIS-----------YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred CCHHHhCCc--eeeeecccCcee-----------ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchh
Confidence 777777544 899999999986 456777889999999999999873 4443332 22235667766
Q ss_pred cc
Q 040238 312 NI 313 (549)
Q Consensus 312 n~ 313 (549)
|.
T Consensus 270 ~q 271 (722)
T KOG0532|consen 270 CQ 271 (722)
T ss_pred cc
Confidence 63
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-11 Score=105.73 Aligned_cols=128 Identities=23% Similarity=0.295 Sum_probs=52.2
Q ss_pred cccCCCCCCEEEccCCcCCcccccccc-CCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcC
Q 040238 18 SIGNLRSLEAIHIAKCNVSGQITSSLR-NLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTT 96 (549)
Q Consensus 18 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 96 (549)
.+.+..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.|+. +. . +..+++|++|++++|+|+.++.... ..
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~--l~~L~~L~~L~L~~N~I~~i~~~l~-~~ 86 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-G--LPGLPRLKTLDLSNNRISSISEGLD-KN 86 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T------TT--EEE--SS---S-CHHHH-HH
T ss_pred ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-C--ccChhhhhhcccCCCCCCccccchH-Hh
Confidence 356677899999999999865 3465 58899999999999984 32 2 6789999999999999998864211 14
Q ss_pred CCCCCEEEccCCCCCCCCh--hhcCCCCccEEEeecCcCCCCCCc----ccccccCCCCcEEEcc
Q 040238 97 SQKLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVPK----WLLDPNMQNLNALNIS 155 (549)
Q Consensus 97 ~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~l~~L~~L~L~ 155 (549)
+++|++|++++|++..+.+ .+..+++|++|++.+|+++.. +. .+. .+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~--~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIY--KLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHH--H-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHH--HcChhheeCCE
Confidence 7899999999999966553 677899999999999998743 32 233 78999999864
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-12 Score=117.90 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=84.0
Q ss_pred cccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCccc----cCch-----hhcCCCCCCCeEeccCCc
Q 040238 18 SIGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRGT----IKLD-----VLLTSWKNLEFLALSLNR 84 (549)
Q Consensus 18 ~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~-----~~~~~l~~L~~L~Ls~n~ 84 (549)
.+..+..+++++|++|.+... +...+.+.++|+..+++.- ++|. +|.. ..+..+++|++||||+|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345567777888888777532 3344556667777777653 2222 2211 124556678888888875
Q ss_pred cceeeccCCCc---CCCCCCEEEccCCCCCCCCh--------------hhcCCCCccEEEeecCcCCCCCC----ccccc
Q 040238 85 LSVLTKATSNT---TSQKLKYIGLRSCNLTKFPN--------------FLQNQYHLLVLDLSDNRIQGKVP----KWLLD 143 (549)
Q Consensus 85 i~~~~~~~~~~---~~~~L~~L~l~~n~l~~l~~--------------~l~~l~~L~~L~l~~n~l~~~~~----~~~~~ 143 (549)
+..-+...+.. .+..|++|.|.+|.++.... -...-+.|+++....|++...-. ..|.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~- 182 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ- 182 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH-
Confidence 54433322211 56778888888887743221 12344678888888888753322 2333
Q ss_pred ccCCCCcEEEccCCcCCC
Q 040238 144 PNMQNLNALNISHNFLTG 161 (549)
Q Consensus 144 ~~l~~L~~L~L~~n~~~~ 161 (549)
..+.|+.+.+..|.+..
T Consensus 183 -~~~~leevr~~qN~I~~ 199 (382)
T KOG1909|consen 183 -SHPTLEEVRLSQNGIRP 199 (382)
T ss_pred -hccccceEEEecccccC
Confidence 45788888888887653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-10 Score=116.79 Aligned_cols=183 Identities=39% Similarity=0.512 Sum_probs=99.9
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
+..++.++.|++.+|.++ .++.......++|+.|++++|.+.. +|..+..+++|+.|++++|++.. +
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-----------l~~~~~~l~~L~~L~l~~N~l~~-l 178 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-----------LPSPLRNLPNLKNLDLSFNDLSD-L 178 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-----------hhhhhhccccccccccCCchhhh-h
Confidence 334455666666666666 3333332210146666666666642 22334566666666666666663 3
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccC
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI 374 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~ 374 (549)
+...+..++|+.|++++|.+..+.+.. .....|+++++++|++ . ..
T Consensus 179 ~~~~~~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~~------------------------------~-~~ 224 (394)
T COG4886 179 PKLLSNLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNSI------------------------------I-EL 224 (394)
T ss_pred hhhhhhhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCcc------------------------------e-ec
Confidence 333335566666666666665543221 1233355555555531 1 23
Q ss_pred chhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 375 PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 375 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+..+..+..+..|.+.+|++. ..+..++.++.++.|++++|+++...+ +..+.+++.|++++|.+....|
T Consensus 225 ~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 225 LSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 334555666666666666665 334556666667777777776663332 6666667777777766665444
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-11 Score=115.67 Aligned_cols=89 Identities=25% Similarity=0.261 Sum_probs=48.0
Q ss_pred CCCCCCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCCCc-ccccccCCCCcEEEccCCcCCCCCCccccccCC
Q 040238 96 TSQKLKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVPK-WLLDPNMQNLNALNISHNFLTGFDQHLVVLPAN 172 (549)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 172 (549)
++.+|+.+.|.++.+...+ .....+++++.|||++|-+....+- .++ ..+|+|+.|+++.|++............
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~-eqLp~Le~LNls~Nrl~~~~~s~~~~~l- 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIA-EQLPSLENLNLSSNRLSNFISSNTTLLL- 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHH-HhcccchhcccccccccCCccccchhhh-
Confidence 5566777777776664444 2455667777777777655422111 111 2567777777777766544333211111
Q ss_pred CCCccEEEccCCcCC
Q 040238 173 KGDLLTFDLSSNNLQ 187 (549)
Q Consensus 173 ~~~L~~L~L~~n~l~ 187 (549)
.+|+.|.++.|.++
T Consensus 197 -~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 197 -SHLKQLVLNSCGLS 210 (505)
T ss_pred -hhhheEEeccCCCC
Confidence 22556666655554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-12 Score=123.78 Aligned_cols=197 Identities=26% Similarity=0.314 Sum_probs=152.4
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCC
Q 040238 20 GNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQK 99 (549)
Q Consensus 20 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 99 (549)
..+..-...||+.|++. ..|..+..+..|+.+.+..|.+. .+|.. +.++..|.+||++.|+++.++...+. --
T Consensus 72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~--i~~L~~lt~l~ls~NqlS~lp~~lC~---lp 144 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEA--ICNLEALTFLDLSSNQLSHLPDGLCD---LP 144 (722)
T ss_pred ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchh--hhhhhHHHHhhhccchhhcCChhhhc---Cc
Confidence 35566677888999887 56778888888999999999888 77877 88999999999999988888876544 35
Q ss_pred CCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 100 LKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 100 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
|+.|-+++|+++.+|+.++.+..|..||.+.|.+. .+|.-+. .+.+|+.|.+..|++...+...... . |..|
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~--~l~slr~l~vrRn~l~~lp~El~~L---p--Li~l 216 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG--YLTSLRDLNVRRNHLEDLPEELCSL---P--LIRL 216 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhh--hHHHHHHHHHhhhhhhhCCHHHhCC---c--eeee
Confidence 88999999999999998888889999999999987 6676676 8889999999999988887764311 1 7788
Q ss_pred EccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCC--CCCCeeecCCC
Q 040238 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSS--DELSVLDLQGN 254 (549)
Q Consensus 180 ~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--~~L~~L~L~~n 254 (549)
|++.|++. .+|-.|..|..|++|-|.+|.+. .-|..+...- .=.++|+..-+
T Consensus 217 DfScNkis----------------------~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DFSCNKIS----------------------YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecccCcee----------------------ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88887776 67778888888888888888876 4444443221 01345555555
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-10 Score=99.25 Aligned_cols=87 Identities=31% Similarity=0.361 Sum_probs=17.1
Q ss_pred CCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCc
Q 040238 71 SWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLN 150 (549)
Q Consensus 71 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 150 (549)
+..+++.|+|++|.|+.+..... .+.+|+.|++++|.++.++ .+..++.|++|++++|+++. +...+. ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~--~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~-~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGA--TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS-ISEGLD-KNLPNLQ 91 (175)
T ss_dssp -------------------S--T--T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S--CHHHH-HH-TT--
T ss_pred cccccccccccccccccccchhh--hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc-cccchH-HhCCcCC
Confidence 33344555555555444433221 2344555555555554443 34445555555555555542 222221 0345555
Q ss_pred EEEccCCcCCCC
Q 040238 151 ALNISHNFLTGF 162 (549)
Q Consensus 151 ~L~L~~n~~~~~ 162 (549)
+|++++|++...
T Consensus 92 ~L~L~~N~I~~l 103 (175)
T PF14580_consen 92 ELYLSNNKISDL 103 (175)
T ss_dssp EEE-TTS---SC
T ss_pred EEECcCCcCCCh
Confidence 555555555443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-11 Score=107.62 Aligned_cols=110 Identities=25% Similarity=0.240 Sum_probs=50.3
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
+.-.|.++.|++|+|.+... .. +..+. +|++|||++|.++.. ..|-..+-++++|.++.|.+...
T Consensus 303 vKL~Pkir~L~lS~N~i~~v-~n-La~L~-~L~~LDLS~N~Ls~~-----------~Gwh~KLGNIKtL~La~N~iE~L- 367 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTV-QN-LAELP-QLQLLDLSGNLLAEC-----------VGWHLKLGNIKTLKLAQNKIETL- 367 (490)
T ss_pred hhhccceeEEeccccceeee-hh-hhhcc-cceEeecccchhHhh-----------hhhHhhhcCEeeeehhhhhHhhh-
Confidence 33345555555555555421 11 22222 455555555554321 11223344555555555555421
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccc
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFI 341 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 341 (549)
..+..+-+|..|++++|++..... ....++++-|+.+.+.+|++.
T Consensus 368 -SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 368 -SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred -hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCcc
Confidence 234444455555555555544321 112255555666666666554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-11 Score=113.57 Aligned_cols=242 Identities=21% Similarity=0.201 Sum_probs=128.2
Q ss_pred ccEEEccCCcCCCCCC-------CCCCCcceeecccC---CCCCcCchh-------hhcCCCCCeEeCcCCcCCCcCCcc
Q 040238 176 LLTFDLSSNNLQGPLP-------VPPPGTIHYLASNN---SLTGEIPSW-------ICNLNILESLVLSHNNLSGLLPQC 238 (549)
Q Consensus 176 L~~L~L~~n~l~~~~~-------~~~~~L~~L~l~~n---~~~~~~~~~-------l~~l~~L~~L~Ls~n~l~~~~~~~ 238 (549)
+++++|++|.+..... ...+.|+..++++- +...++|.. +.+++.|++++||.|.+.-..+..
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence 7888888887753211 11345555555432 222344433 345567777777777766444443
Q ss_pred hhcC---CCCCCeeecCCCccCCcCCCcccc---cCCCCccccCCCCCcEEEccCCcCCCCc----CcccCCCCCCCEEE
Q 040238 239 LGNS---SDELSVLDLQGNNFFGTIPNTFIK---ERRIPRSLINCSKLEFLGLGNNQISDTF----PSWLGTLPNLNVLI 308 (549)
Q Consensus 239 ~~~~---~~~L~~L~L~~n~l~~~~~~~~~~---~~~l~~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ 308 (549)
+..+ ...|++|.|.+|.+...-...+.+ .-...+....-+.|+++..+.|++.... ...|...+.|+.+.
T Consensus 112 l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr 191 (382)
T KOG1909|consen 112 LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR 191 (382)
T ss_pred HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEE
Confidence 3322 225777777777664322111100 0001112233456667766666665321 23345556666666
Q ss_pred ccCcccccccC--CCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCE
Q 040238 309 LRSNIFYGIIK--EPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQV 386 (549)
Q Consensus 309 L~~n~l~~~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 386 (549)
++.|.+..... ....+.+++.|+.||+.+|-++..-.. .+...+..+++|+.
T Consensus 192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--------------------------~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--------------------------ALAKALSSWPHLRE 245 (382)
T ss_pred EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH--------------------------HHHHHhcccchhee
Confidence 66665532211 111234555555555555554321111 13345566777777
Q ss_pred EEccCCccccCCCccc-----CCCCCCCEeeCCCCccccc----CCcCccCCCCCcEEecccCcCc
Q 040238 387 LNLQNNSLQGHIPSCL-----GNLPNLESLDLSNNKFSGQ----IPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 387 L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
|++++|.+...-..+| ...|+|+.|.+.+|.++.. +...+...+.|..|++++|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 7777777764332222 3457888888888877632 2233455778888888888873
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=110.17 Aligned_cols=111 Identities=37% Similarity=0.465 Sum_probs=62.8
Q ss_pred cCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCc
Q 040238 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS 296 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~ 296 (549)
..+.|+.|++++|.+. .+|..... +..|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+.
T Consensus 184 ~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-----------~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 184 NLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-----------ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-----------ecchhhhhcccccccccCCceeee-ccc
Confidence 4556666666666665 44443211 214666666666422 123334556666666666666653 244
Q ss_pred ccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccC
Q 040238 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP 345 (549)
Q Consensus 297 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 345 (549)
.++.+++++.|++++|.+..+.. +..+.+++.|++++|.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccccccc----ccccCccCEEeccCccccccch
Confidence 55666667777777776666543 2556667777777766654444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-10 Score=80.60 Aligned_cols=61 Identities=41% Similarity=0.671 Sum_probs=44.6
Q ss_pred CCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcC
Q 040238 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442 (549)
Q Consensus 382 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 442 (549)
++|++|++++|+++...++.|.++++|+.|++++|+++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777755556777777777777777777766677777777777777777764
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.6e-11 Score=105.46 Aligned_cols=131 Identities=27% Similarity=0.343 Sum_probs=90.7
Q ss_pred CCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccc
Q 040238 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357 (549)
Q Consensus 278 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 357 (549)
..|+++|+++|.|+ .+.++..-.|.++.|++++|++..+.. ...+++|+.||+|+|.++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~Ls---------------- 342 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGNLLA---------------- 342 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh----hhhcccceEeecccchhH----------------
Confidence 46778888888777 455566667778888888887766532 245677777777777653
Q ss_pred cccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccC-CcCccCCCCCcEEe
Q 040238 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQI-PQQLVELTFLEFFN 436 (549)
Q Consensus 358 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 436 (549)
.+.++=..+.+.++|.|++|.+... ..++.+-+|..||+++|+|.... -..++++|-|+.+.
T Consensus 343 ---------------~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 343 ---------------ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ---------------hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 2233444566788888888877632 44677778888888888886432 24678888888888
Q ss_pred cccCcCcccC
Q 040238 437 VSDNHLTGLI 446 (549)
Q Consensus 437 l~~N~l~~~~ 446 (549)
+.+|++.+.+
T Consensus 406 L~~NPl~~~v 415 (490)
T KOG1259|consen 406 LTGNPLAGSV 415 (490)
T ss_pred hcCCCccccc
Confidence 8888887553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.6e-10 Score=77.98 Aligned_cols=59 Identities=27% Similarity=0.367 Sum_probs=30.6
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCc
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNR 84 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~ 84 (549)
+|++|++++|++..+.++.|.++++|++|++++|.++...+.. |..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~--f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA--FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT--TTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH--HcCCCCCCEEeCcCCc
Confidence 4555555555555554455555555555555555555333333 5555555555555553
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.6e-10 Score=110.85 Aligned_cols=153 Identities=27% Similarity=0.311 Sum_probs=103.4
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.+..++.+.+..|.+.. ....+..+.+|+.|++..|.|..... . +..+++|++|++++|.|+.+.... .+..|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~--l~~~~~L~~L~ls~N~I~~i~~l~---~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-L--LSSLVNLQVLDLSFNKITKLEGLS---TLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-c--hhhhhcchheeccccccccccchh---hccch
Confidence 45667777777777764 22446778888888888888873332 1 467788888888888887776665 34568
Q ss_pred CEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEE
Q 040238 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (549)
+.|++++|.+..+. .+..+..|+.+++++|.+....+.... .+.+++.+++.+|.+..+...... .. +..++
T Consensus 143 ~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~--~~~~l~~l~l~~n~i~~i~~~~~~---~~--l~~~~ 214 (414)
T KOG0531|consen 143 KELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELS--ELISLEELDLGGNSIREIEGLDLL---KK--LVLLS 214 (414)
T ss_pred hhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhh--hccchHHHhccCCchhcccchHHH---HH--HHHhh
Confidence 88888888887765 355578888888888888754441023 678888888888887765443111 11 44446
Q ss_pred ccCCcCCC
Q 040238 181 LSSNNLQG 188 (549)
Q Consensus 181 L~~n~l~~ 188 (549)
+..|.+..
T Consensus 215 l~~n~i~~ 222 (414)
T KOG0531|consen 215 LLDNKISK 222 (414)
T ss_pred ccccccee
Confidence 66666553
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-09 Score=108.27 Aligned_cols=124 Identities=24% Similarity=0.186 Sum_probs=58.2
Q ss_pred ccEEEccCCcCCCCCC--CCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCC
Q 040238 176 LLTFDLSSNNLQGPLP--VPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQG 253 (549)
Q Consensus 176 L~~L~L~~n~l~~~~~--~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 253 (549)
++.+.+..|.+..... ..+.+++.+++.+|.+..... .+..+++|++|++++|.|+...+- ..+. .|+.|++++
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l--~~l~-~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGL--STLT-LLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccch--hhcc-chhhheecc
Confidence 5566666666654222 235555555555555553221 134455555555555555533221 1111 355555555
Q ss_pred CccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC-cccCCCCCCCEEEccCccccc
Q 040238 254 NNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP-SWLGTLPNLNVLILRSNIFYG 316 (549)
Q Consensus 254 n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 316 (549)
|.++... .+..++.|+.+++++|+++...+ . ...+.+++.+.+.+|.+..
T Consensus 150 N~i~~~~------------~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 150 NLISDIS------------GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred Ccchhcc------------CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 5554321 12234555555555555543322 1 2344455555555554433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.9e-09 Score=111.45 Aligned_cols=293 Identities=22% Similarity=0.189 Sum_probs=146.5
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEEeCCCCc--CccccCchhhcCCCCCCCeEeccCCccceeeccCCCc-CCCC
Q 040238 23 RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS--YRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT-TSQK 99 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~~~~ 99 (549)
...|...+-+|.+.... .. ..++.|++|-+..|. +. .++.. +|..++.|++|||++| ......|... .+.+
T Consensus 523 ~~~rr~s~~~~~~~~~~-~~-~~~~~L~tLll~~n~~~l~-~is~~-ff~~m~~LrVLDLs~~--~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA-GS-SENPKLRTLLLQRNSDWLL-EISGE-FFRSLPLLRVLDLSGN--SSLSKLPSSIGELVH 596 (889)
T ss_pred hheeEEEEeccchhhcc-CC-CCCCccceEEEeecchhhh-hcCHH-HHhhCcceEEEECCCC--CccCcCChHHhhhhh
Confidence 55677777776665322 22 133367777777775 33 33433 5677777777777776 5544444443 4677
Q ss_pred CCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 100 LKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 100 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
||+|+++++.+..+|..+.++..|.+|++..+.-....|.... .+++|++|.+............. .....++|+.+
T Consensus 597 LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~--~L~~Lr~L~l~~s~~~~~~~~l~-el~~Le~L~~l 673 (889)
T KOG4658|consen 597 LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL--ELQSLRVLRLPRSALSNDKLLLK-ELENLEHLENL 673 (889)
T ss_pred hhcccccCCCccccchHHHHHHhhheeccccccccccccchhh--hcccccEEEeeccccccchhhHH-hhhcccchhhh
Confidence 7777777777777777777777777777777665445555554 57777777776554211111000 00111113333
Q ss_pred EccCCcCCCCC-CCCCCCc----ceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcC-----CCCCCee
Q 040238 180 DLSSNNLQGPL-PVPPPGT----IHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNS-----SDELSVL 249 (549)
Q Consensus 180 ~L~~n~l~~~~-~~~~~~L----~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-----~~~L~~L 249 (549)
........... ......| +.+.+.++.. ...+..+..+.+|+.|.+.++.+........... .+++..+
T Consensus 674 s~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 674 SITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred eeecchhHhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 32221110000 0011111 1222222211 2334456677888888888887753222111110 0012222
Q ss_pred ecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCC
Q 040238 250 DLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSK 329 (549)
Q Consensus 250 ~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 329 (549)
.+.++... .-+.+..-.++|+.|++..+.....+......+..+..+.+..+.+.+.. .......+++
T Consensus 753 ~~~~~~~~-----------r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~-~~~~l~~l~~ 820 (889)
T KOG4658|consen 753 SILNCHML-----------RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLR-MLCSLGGLPQ 820 (889)
T ss_pred Hhhccccc-----------cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccce-eeecCCCCce
Confidence 22222111 11233344678888888887766555544455555555555555554441 0111134455
Q ss_pred CceeeCCC
Q 040238 330 LRIIDLSN 337 (549)
Q Consensus 330 L~~L~ls~ 337 (549)
+..+.+++
T Consensus 821 i~~~~l~~ 828 (889)
T KOG4658|consen 821 LYWLPLSF 828 (889)
T ss_pred eEecccCc
Confidence 55444443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-08 Score=108.18 Aligned_cols=312 Identities=18% Similarity=0.161 Sum_probs=160.4
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCc--CCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEe
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCN--VSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLA 79 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~ 79 (549)
|...+.+|.+. .++.. ..+++|++|-+..|. +.....++|..++.|+.||+++|.--+.+|.. ++.+-+|++|+
T Consensus 526 rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~ 601 (889)
T KOG4658|consen 526 RRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLD 601 (889)
T ss_pred eEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH--Hhhhhhhhccc
Confidence 34445555554 22222 234578888888875 55555566788888888888877665677777 78888888888
Q ss_pred ccCCccceeeccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCcCC--CCCCcccccccCCCCcEEEccC
Q 040238 80 LSLNRLSVLTKATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNRIQ--GKVPKWLLDPNMQNLNALNISH 156 (549)
Q Consensus 80 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~l~~L~~L~L~~ 156 (549)
+++..++.+|.... ++..|.+|++..+.. ..+|.....+.+|++|.+...... ......+. .+.+|+.+....
T Consensus 602 L~~t~I~~LP~~l~--~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~--~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 602 LSDTGISHLPSGLG--NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELE--NLEHLENLSITI 677 (889)
T ss_pred ccCCCccccchHHH--HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhh--cccchhhheeec
Confidence 88887776655432 567888888887754 445555666888888888766422 11122222 334444443322
Q ss_pred CcCCCCCCccccccCCCCCc----cEEEccCCcCCCCCC--CCCCCcceeecccCCCCCcCchhhhc------CCCCCeE
Q 040238 157 NFLTGFDQHLVVLPANKGDL----LTFDLSSNNLQGPLP--VPPPGTIHYLASNNSLTGEIPSWICN------LNILESL 224 (549)
Q Consensus 157 n~~~~~~~~~~~~~~~~~~L----~~L~L~~n~l~~~~~--~~~~~L~~L~l~~n~~~~~~~~~l~~------l~~L~~L 224 (549)
... ..... ....++| +.+.+.++....... ..+.+|+.|.+.++.+......+... ++++..+
T Consensus 678 ~s~-~~~e~----l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 678 SSV-LLLED----LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred chh-HhHhh----hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 211 00000 0000001 122222222221111 12677888888888776443333221 2334444
Q ss_pred eCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCC-cCcccCCCCC
Q 040238 225 VLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDT-FPSWLGTLPN 303 (549)
Q Consensus 225 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~ 303 (549)
.+.++..... +.. ....++|+.|.+..+.....+.+. ...+..+..+.+..+.+.+. .-...+++++
T Consensus 753 ~~~~~~~~r~-l~~-~~f~~~L~~l~l~~~~~~e~~i~~----------~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 753 SILNCHMLRD-LTW-LLFAPHLTSLSLVSCRLLEDIIPK----------LKALLELKELILPFNKLEGLRMLCSLGGLPQ 820 (889)
T ss_pred Hhhccccccc-cch-hhccCcccEEEEecccccccCCCH----------HHHhhhcccEEecccccccceeeecCCCCce
Confidence 4444433211 111 123457889988887665443322 23344444444455444433 2233444444
Q ss_pred CCEEEccCcccccccCCC-CCccCCCCCceeeCCCC
Q 040238 304 LNVLILRSNIFYGIIKEP-RTDCGFSKLRIIDLSNN 338 (549)
Q Consensus 304 L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~ls~n 338 (549)
+..+.+..=.+....... .....+|.+..+.+.+|
T Consensus 821 i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 821 LYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred eEecccCccchhheehhcCcccccCccccccceecc
Confidence 444444443322221111 11134566666666654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.9e-09 Score=92.67 Aligned_cols=190 Identities=20% Similarity=0.177 Sum_probs=100.3
Q ss_pred cCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCc
Q 040238 210 EIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQ 289 (549)
Q Consensus 210 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~ 289 (549)
++...+..+|.|+.|+++.|.+...+..--... .+|+.|.|.|..+.-...+++ +..+|.+++|+++.|.
T Consensus 88 eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~-~nl~~lVLNgT~L~w~~~~s~---------l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 88 EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL-KNLRVLVLNGTGLSWTQSTSS---------LDDLPKVTELHMSDNS 157 (418)
T ss_pred HHHHHHhcCccceEeeccCCcCCCccccCcccc-cceEEEEEcCCCCChhhhhhh---------hhcchhhhhhhhccch
Confidence 344456789999999999998874432211122 278899998887754333322 5677888888888885
Q ss_pred CCCCcC--ccc-CCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEcc
Q 040238 290 ISDTFP--SWL-GTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILS 366 (549)
Q Consensus 290 l~~~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~ 366 (549)
+..... +.. ..-+.+++++...|...-.....-...-++++..+-+..|++...-..
T Consensus 158 ~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-------------------- 217 (418)
T KOG2982|consen 158 LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-------------------- 217 (418)
T ss_pred hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc--------------------
Confidence 432111 111 122345555555554322111111112344555555554443221111
Q ss_pred CCcCcccCchhhcCCCCCCEEEccCCccccC-CCcccCCCCCCCEeeCCCCcccccCCc------CccCCCCCcEEecc
Q 040238 367 NNSFDSVIPASIANLKGLQVLNLQNNSLQGH-IPSCLGNLPNLESLDLSNNKFSGQIPQ------QLVELTFLEFFNVS 438 (549)
Q Consensus 367 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~ 438 (549)
..+..++.+--|+|+.|+|.+- .-+++..+++|..|.+++|++...... .++.+++++.|+=+
T Consensus 218 ---------k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 218 ---------KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ---------ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 2234445555666666666531 124456667777777777766543322 23455666666543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-09 Score=96.00 Aligned_cols=178 Identities=21% Similarity=0.164 Sum_probs=100.6
Q ss_pred CCCEEEccCCcCCc-cccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCC---cCCCC
Q 040238 24 SLEAIHIAKCNVSG-QITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSN---TTSQK 99 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---~~~~~ 99 (549)
+|++||||+..++. ..-..+..|.+|+.|++.++++...+-.. +.+-.+|+.|+++.+ +-+...... ..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~--iAkN~~L~~lnlsm~--sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT--IAKNSNLVRLNLSMC--SGFTENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH--Hhccccceeeccccc--cccchhHHHHHHHhhhh
Confidence 57777777776652 22344566777777777777776555444 667777788887776 333333222 26777
Q ss_pred CCEEEccCCCC-CC-CChhhcC-CCCccEEEeecCc--CCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCC
Q 040238 100 LKYIGLRSCNL-TK-FPNFLQN-QYHLLVLDLSDNR--IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKG 174 (549)
Q Consensus 100 L~~L~l~~n~l-~~-l~~~l~~-l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~ 174 (549)
|..|+++.|.+ +. +...+.. -++|+.|+++|+. +.......+. ..+++|.+|||+.|..-...-...+...+.
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~-~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~- 339 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFKFNY- 339 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH-HhCCceeeeccccccccCchHHHHHHhcch-
Confidence 77777777765 22 2112222 2467777777764 1111111221 267778888887765433221112222333
Q ss_pred CccEEEccCCcCCCC----CCCCCCCcceeecccCCCC
Q 040238 175 DLLTFDLSSNNLQGP----LPVPPPGTIHYLASNNSLT 208 (549)
Q Consensus 175 ~L~~L~L~~n~l~~~----~~~~~~~L~~L~l~~n~~~ 208 (549)
|++|.++.|..... .....|++.+|++.++--.
T Consensus 340 -L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 340 -LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred -heeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 77888877754321 1123678888887776443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-09 Score=96.49 Aligned_cols=85 Identities=28% Similarity=0.318 Sum_probs=36.3
Q ss_pred CCeEeccCCccceeeccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCc-CCCCCCcccccccCCCCcEE
Q 040238 75 LEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNR-IQGKVPKWLLDPNMQNLNAL 152 (549)
Q Consensus 75 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L 152 (549)
|++||||...|+.-.-......|.+|+.|++.++++ ..+-..+..-.+|+.|+++.+. ++......+. ..+..|+.|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~-~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLL-SSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHH-HhhhhHhhc
Confidence 455555544333222221112445555555555554 3333344444555555555432 2211111111 145555555
Q ss_pred EccCCcCC
Q 040238 153 NISHNFLT 160 (549)
Q Consensus 153 ~L~~n~~~ 160 (549)
++++|...
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=7e-09 Score=104.10 Aligned_cols=128 Identities=23% Similarity=0.140 Sum_probs=87.7
Q ss_pred CCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCc
Q 040238 97 SQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDL 176 (549)
Q Consensus 97 ~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L 176 (549)
...|...+.+.|.+..+...+.-++.++.|+|++|+++... .+. .+++|++|||++|.+..++.... ..+ .|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr--~l~~LkhLDlsyN~L~~vp~l~~-~gc---~L 234 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLR--RLPKLKHLDLSYNCLRHVPQLSM-VGC---KL 234 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHH--hcccccccccccchhccccccch-hhh---hh
Confidence 34677888888888888888888889999999999987433 555 78999999999998887765421 111 28
Q ss_pred cEEEccCCcCCCCCCC-CCCCcceeecccCCCCCcC-chhhhcCCCCCeEeCcCCcCC
Q 040238 177 LTFDLSSNNLQGPLPV-PPPGTIHYLASNNSLTGEI-PSWICNLNILESLVLSHNNLS 232 (549)
Q Consensus 177 ~~L~L~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~ 232 (549)
..|.+++|.++..... .+.+|+.||++.|-+.+.- -..+..+..|+.|+|.+|.+.
T Consensus 235 ~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888888877643222 2566666677766665421 122344556666777777664
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-08 Score=89.78 Aligned_cols=111 Identities=23% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCCCEEEccCCcCCccc-ccccc-CCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 23 RSLEAIHIAKCNVSGQI-TSSLR-NLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~-~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
..++-|.+.++.|...- -+.|+ .+++++.+||.+|.|+.-.....++.++|.|++|+++.|.+........ ....+|
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl 123 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNL 123 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccce
Confidence 34456666666665321 12233 4678888888888887443333356788888888888886554332221 245678
Q ss_pred CEEEccCCCC--CCCChhhcCCCCccEEEeecCcCC
Q 040238 101 KYIGLRSCNL--TKFPNFLQNQYHLLVLDLSDNRIQ 134 (549)
Q Consensus 101 ~~L~l~~n~l--~~l~~~l~~l~~L~~L~l~~n~l~ 134 (549)
+.|-|.+..+ +.....+..++.++.|.++.|.+.
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 8888888766 445556677778888888877543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.8e-09 Score=103.77 Aligned_cols=122 Identities=25% Similarity=0.270 Sum_probs=72.8
Q ss_pred EECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCC
Q 040238 4 LYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLN 83 (549)
Q Consensus 4 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n 83 (549)
.+.++|.+. .+-+++.-++.|+.|+|++|++.... .+..+++|++|||++|.+...-... ...++ |+.|.+++|
T Consensus 169 a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 169 ASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLS--MVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccc--hhhhh-heeeeeccc
Confidence 345566654 44455666677777777777776543 5667777777777777766333223 33333 777777777
Q ss_pred ccceeeccCCCcCCCCCCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCC
Q 040238 84 RLSVLTKATSNTTSQKLKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQ 134 (549)
Q Consensus 84 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~ 134 (549)
.++.+.... ++.+|+.||+++|-+.... ..+..+..|+.|.|.||++.
T Consensus 243 ~l~tL~gie---~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALTTLRGIE---NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHhhhhHH---hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 555554433 5666777777777653322 13455566677777777654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4e-08 Score=78.21 Aligned_cols=81 Identities=28% Similarity=0.428 Sum_probs=45.9
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+..+|++|.+....+..-..++.+++|++++|.++ .+|+.+..++.|+.|+++.|++. ..|..+..+.+|-.|+..+|
T Consensus 56 ~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 56 TKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 33444444444333222233445666666666666 55555666666666666666666 45555555666666666666
Q ss_pred cCc
Q 040238 441 HLT 443 (549)
Q Consensus 441 ~l~ 443 (549)
.+.
T Consensus 134 a~~ 136 (177)
T KOG4579|consen 134 ARA 136 (177)
T ss_pred ccc
Confidence 554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.6e-06 Score=70.86 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=68.9
Q ss_pred CCEEEccCCcCCcccccccc-CCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 25 LEAIHIAKCNVSGQITSSLR-NLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 25 L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
=+.++|.+.++..... ++ -..+...+||+.|.+. ..+ .|..++.|.+|.+++|+|+.+...... .+++|+.|
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~-~l~---~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR-KLD---NLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTL 93 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchh-hcc---cCCCccccceEEecCCcceeeccchhh-hccccceE
Confidence 3555555554432211 22 2334566677776665 111 256666677777777766666555433 35667777
Q ss_pred EccCCCCCCCCh--hhcCCCCccEEEeecCcCCCCCC---cccccccCCCCcEEEccC
Q 040238 104 GLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVP---KWLLDPNMQNLNALNISH 156 (549)
Q Consensus 104 ~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~L~~ 156 (549)
.+.+|.+..+.+ .+..++.|++|.+-+|+++..-- -.+. .+|+|+.||+..
T Consensus 94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~--klp~l~~LDF~k 149 (233)
T KOG1644|consen 94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY--KLPSLRTLDFQK 149 (233)
T ss_pred EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE--ecCcceEeehhh
Confidence 777776644432 45566677777777776652211 1223 567777777754
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-07 Score=89.93 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=44.0
Q ss_pred CCCEEEccCCcCCccc--cccccCCCCCCEEeCCCCcC-ccccCchhhcCCCCCCCeEeccCCccceeeccCCC---cCC
Q 040238 24 SLEAIHIAKCNVSGQI--TSSLRNLSQLFFLDLAKNSY-RGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSN---TTS 97 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~--~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---~~~ 97 (549)
.|+.|.+.++.-.+.- -..-.+++++++|++.++.. +...-.+ +-..+++|++|++..| ..+...... ..+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-la~~C~~l~~l~L~~c--~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-LARYCRKLRHLNLHSC--SSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-HHHhcchhhhhhhccc--chhHHHHHHHHHHhh
Confidence 4556666555332211 12223556666665555432 1111111 2244556666666554 222222111 145
Q ss_pred CCCCEEEccCCCC---CCCChhhcCCCCccEEEeec
Q 040238 98 QKLKYIGLRSCNL---TKFPNFLQNQYHLLVLDLSD 130 (549)
Q Consensus 98 ~~L~~L~l~~n~l---~~l~~~l~~l~~L~~L~l~~ 130 (549)
++|++++++.|.- ..+.....++..++.+.+.|
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence 5555555555532 12223334444444444444
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.9e-07 Score=74.41 Aligned_cols=127 Identities=15% Similarity=0.091 Sum_probs=67.9
Q ss_pred EEECCCCCCCCc--ccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 3 FLYLRLNNFSGD--LLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 3 ~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
.+||+.|++-.+ .+..+.+..+|+..+|++|.+.+..+..-...+.++.|++++|.|. .+|.. +..++.|+.|++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE--~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEE--LAAMPALRSLNL 107 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHH--HhhhHHhhhccc
Confidence 355666654311 2233445556666666666666444333344556666666666666 66666 666666666666
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQ 134 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~ 134 (549)
+.|.+...+.... .+.++-.|+..+|....+|..+..-+..-..++.++++.
T Consensus 108 ~~N~l~~~p~vi~--~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 108 RFNPLNAEPRVIA--PLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLG 159 (177)
T ss_pred ccCccccchHHHH--HHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccc
Confidence 6665555444322 245556666666666555544333333333333444443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.3e-06 Score=53.93 Aligned_cols=36 Identities=53% Similarity=0.821 Sum_probs=19.0
Q ss_pred CCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 383 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+|++|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555555
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=7e-07 Score=79.68 Aligned_cols=226 Identities=19% Similarity=0.172 Sum_probs=121.0
Q ss_pred hcCCCCCeEeCcCCcCCCcCCcchhcCCC---CCCeeecCCCccCCcCCCcccc-cCCCCccccCCCCCcEEEccCCcCC
Q 040238 216 CNLNILESLVLSHNNLSGLLPQCLGNSSD---ELSVLDLQGNNFFGTIPNTFIK-ERRIPRSLINCSKLEFLGLGNNQIS 291 (549)
Q Consensus 216 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~-~~~l~~~l~~~~~L~~L~l~~n~l~ 291 (549)
..+..+.+++||+|.+......++..... +|+..+++.- ++|...+.+.. ..-+.+.+-.||+|++.++|+|-+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34566777777777766544444433222 4444444432 22211111100 0112234567888888888888776
Q ss_pred CCcCc----ccCCCCCCCEEEccCcccccccCCCCC-----------ccCCCCCceeeCCCCccccccChh-hhhccccc
Q 040238 292 DTFPS----WLGTLPNLNVLILRSNIFYGIIKEPRT-----------DCGFSKLRIIDLSNNIFIGTLPLK-SFLCWNAM 355 (549)
Q Consensus 292 ~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~-----------~~~l~~L~~L~ls~n~l~~~~~~~-~~~~l~~l 355 (549)
...|. .++.-..|++|.+++|.+..+....+. ...-+.|+..+...|++.. .|.. +...+.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~s- 183 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLES- 183 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHh-
Confidence 54443 345567788888888876443222211 1245678888888877632 1111 1111111
Q ss_pred cccccceEEccCCcCcccC-----chhhcCCCCCCEEEccCCccccC----CCcccCCCCCCCEeeCCCCcccccCCcC-
Q 040238 356 KIVNTTGIILSNNSFDSVI-----PASIANLKGLQVLNLQNNSLQGH----IPSCLGNLPNLESLDLSNNKFSGQIPQQ- 425 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~- 425 (549)
.-+++.+.+..|.|.-.- -..+..+.+|+.|||..|-++.. +..++...+.|++|.+.+|-++..-...
T Consensus 184 -h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 184 -HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred -hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 123367777777765331 11234567788888888877622 2234455566788888888776432222
Q ss_pred ---cc--CCCCCcEEecccCcCccc
Q 040238 426 ---LV--ELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 426 ---~~--~l~~L~~L~l~~N~l~~~ 445 (549)
|. ..++|..|-..+|...+.
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCc
Confidence 22 246677777777755543
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.5e-06 Score=76.21 Aligned_cols=210 Identities=15% Similarity=0.080 Sum_probs=100.1
Q ss_pred CCCCCCEEEccCCcCCcccc----ccccCCCCCCEEeCCCCcCcccc----Cch-----hhcCCCCCCCeEeccCCccce
Q 040238 21 NLRSLEAIHIAKCNVSGQIT----SSLRNLSQLFFLDLAKNSYRGTI----KLD-----VLLTSWKNLEFLALSLNRLSV 87 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~----~~~-----~~~~~l~~L~~L~Ls~n~i~~ 87 (549)
-+..+..++||+|.|...-. ..+.+-.+|+..+++.- ++|.. +.. .++-+|++|+..+||+|-+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 35566666677666654322 22334455666665542 11111 110 124556667777777664433
Q ss_pred eeccCCC---cCCCCCCEEEccCCCCCCCCh-----h---------hcCCCCccEEEeecCcCCCCCCcccccc---cCC
Q 040238 88 LTKATSN---TTSQKLKYIGLRSCNLTKFPN-----F---------LQNQYHLLVLDLSDNRIQGKVPKWLLDP---NMQ 147 (549)
Q Consensus 88 ~~~~~~~---~~~~~L~~L~l~~n~l~~l~~-----~---------l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~l~ 147 (549)
....+.. ..-..|.+|.+++|.++.+.. . ..+-+.|++.....|++. ..+...+.. .-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence 2211110 134566777777776644321 1 123466777777777764 222221100 114
Q ss_pred CCcEEEccCCcCCCC--CCccccccCCCCCccEEEccCCcCCCCCC-------CCCCCcceeecccCCCCCcCchhhh--
Q 040238 148 NLNALNISHNFLTGF--DQHLVVLPANKGDLLTFDLSSNNLQGPLP-------VPPPGTIHYLASNNSLTGEIPSWIC-- 216 (549)
Q Consensus 148 ~L~~L~L~~n~~~~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~~~~~L~~L~l~~n~~~~~~~~~l~-- 216 (549)
+|+.+.+..|.|... ..-.+.......+|+.||+..|.++..-. ..++.|+.|.+..|-++......+.
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 677777777766532 11112222333347777777776653211 1133355555555554433222211
Q ss_pred ----cCCCCCeEeCcCCcCC
Q 040238 217 ----NLNILESLVLSHNNLS 232 (549)
Q Consensus 217 ----~l~~L~~L~Ls~n~l~ 232 (549)
..|+|..|-..+|.+.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhhhcCCCccccccchhhhc
Confidence 1345555555555443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=4e-05 Score=74.65 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=27.0
Q ss_pred CCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCC-CCCCCChhhcCCCCccEEEeecC
Q 040238 71 SWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSC-NLTKFPNFLQNQYHLLVLDLSDN 131 (549)
Q Consensus 71 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~n 131 (549)
.+.+++.|++++|.++.++.. ..+|++|.+++| .++.+|..+ ..+|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L-----P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL-----PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC-----CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 345666666666655555422 234666666554 224444332 134555555544
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=69.12 Aligned_cols=125 Identities=23% Similarity=0.168 Sum_probs=94.9
Q ss_pred EEECCCCCCCCccccccc-CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 3 FLYLRLNNFSGDLLGSIG-NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
.+||.+.++..+.. ++ -......+||++|++... +.|..++.|..|.+++|+|+...|.- -..+++|+.|.|+
T Consensus 23 e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 23 ELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccch--hhhccccceEEec
Confidence 45555555542211 22 235688999999998743 45788999999999999999555543 4567889999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCCh----hhcCCCCccEEEeecCcC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN----FLQNQYHLLVLDLSDNRI 133 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~~n~l 133 (549)
+|+|..+++......|++|++|.+-+|.++.-+. .+..+++|++||+.+-..
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9999999888777789999999999998855543 366789999999987553
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.3e-05 Score=73.79 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=49.4
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCC-cCCCC
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN-QISDT 293 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~ 293 (549)
+..+.+++.|++++|.++ .+| ..+++|++|.++++.--...|. .+ .++|++|++++| .+. .
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~----------~L--P~nLe~L~Ls~Cs~L~-s 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPG----------SI--PEGLEKLTVCHCPEIS-G 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCc----------hh--hhhhhheEccCccccc-c
Confidence 455788899999998777 566 2455799999987544333332 22 257888888887 443 3
Q ss_pred cCcccCCCCCCCEEEccCccc
Q 040238 294 FPSWLGTLPNLNVLILRSNIF 314 (549)
Q Consensus 294 ~~~~~~~l~~L~~L~L~~n~l 314 (549)
+| ++|+.|+++.+..
T Consensus 110 LP------~sLe~L~L~~n~~ 124 (426)
T PRK15386 110 LP------ESVRSLEIKGSAT 124 (426)
T ss_pred cc------cccceEEeCCCCC
Confidence 33 3577777766544
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.3e-05 Score=51.62 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=18.2
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCc
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~ 60 (549)
+|++|++++|+++.. |..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 455555555555533 233555555555555555554
|
... |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.3e-07 Score=85.31 Aligned_cols=116 Identities=24% Similarity=0.278 Sum_probs=61.7
Q ss_pred cCCCCCeEeCcCCcC-CCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCC--C
Q 040238 217 NLNILESLVLSHNNL-SGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD--T 293 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~--~ 293 (549)
.+..|+.|+.+++.- +...-..++...++|+.+.+.+++--+.... -..-.+++.|+.+++..+.... .
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f--------t~l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF--------TMLGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh--------hhhhcCChhhhhhcccccceehhhh
Confidence 466777887777543 3333334555556788888877753211110 0011456777888777765431 1
Q ss_pred cCcccCCCCCCCEEEccCccccccc---CCCCCccCCCCCceeeCCCCcc
Q 040238 294 FPSWLGTLPNLNVLILRSNIFYGII---KEPRTDCGFSKLRIIDLSNNIF 340 (549)
Q Consensus 294 ~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~l~~L~~L~ls~n~l 340 (549)
+.+.-.+++.|+.+.+++|...... ......+++..|+.+.+++++.
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 2222235677777777777543321 0111124455666666666654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.4e-05 Score=84.43 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=70.6
Q ss_pred CCCCEEEccCCcCC-cccccccc-CCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 23 RSLEAIHIAKCNVS-GQITSSLR-NLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~-~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.+|++|++++.... ...|..++ -+|.|+.|.+++-.+.... ......++++|..||+|+..++.+.... .+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~GIS---~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLSGIS---RLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCcHHHh---ccccH
Confidence 45666666664332 12222333 4566776666665553211 1123556666777777766665553322 45666
Q ss_pred CEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCC--Cccc--ccccCCCCcEEEccCCcCCC
Q 040238 101 KYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKV--PKWL--LDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 101 ~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~--~~~~l~~L~~L~L~~n~~~~ 161 (549)
+.|.+.+=.+..-. ..+.++++|++||+|........ ..-+ .+..+|+|+.||.+++.+..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 66666665554332 24566677777777665433111 1111 01146777777777665554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.8e-06 Score=86.83 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=16.1
Q ss_pred CCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecC
Q 040238 96 TSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDN 131 (549)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n 131 (549)
++++|..||+++++++.+ .++.++++|++|.+.+=
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL 205 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCC
Confidence 344444444444444444 34444444444444443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=4.6e-05 Score=68.30 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=40.2
Q ss_pred CCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCc-CCCCCCEEEccCCCCCCCC--hhhcCCC
Q 040238 45 NLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT-TSQKLKYIGLRSCNLTKFP--NFLQNQY 121 (549)
Q Consensus 45 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~~~~L~~L~l~~n~l~~l~--~~l~~l~ 121 (549)
.+..|+.|++.+..++.... |-.+++|+.|+++.|............ .+++|+++++++|++..+. ..+..+.
T Consensus 41 ~~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 34444555554444442111 344555566666555333332222222 3456666666666553211 1344455
Q ss_pred CccEEEeecCcCC
Q 040238 122 HLLVLDLSDNRIQ 134 (549)
Q Consensus 122 ~L~~L~l~~n~l~ 134 (549)
+|..|++..|..+
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 5666666666554
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00061 Score=56.37 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=61.8
Q ss_pred cccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCc
Q 040238 16 LGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT 95 (549)
Q Consensus 16 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 95 (549)
...|.++++|+.+.+.. .+..+...+|.++++|+.+.+..+ +. .++.. .|.++++|+.+.+.+ .+..++...+.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~-~F~~~~~l~~i~~~~-~~~~i~~~~F~- 78 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDN-AFSNCKSLESITFPN-NLKSIGDNAFS- 78 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TT-TTTT-TT-EEEEETS-TT-EE-TTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-cccee-eeecccccccccccc-ccccccccccc-
Confidence 45677888888888875 566677778888888888888774 55 33332 478887888888865 45556554433
Q ss_pred CCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCC
Q 040238 96 TSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL 149 (549)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 149 (549)
.+.+|+.+.+..+ +..++. .+.+. +++.+.+.. .+.......|. ++++|
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~--~~~~l 128 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFK--NCTKL 128 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-------
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccc--ccccC
Confidence 5778888887654 544443 44554 777777665 33334445555 55554
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00062 Score=56.36 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=28.7
Q ss_pred ccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCC
Q 040238 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337 (549)
Q Consensus 274 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 337 (549)
+.++++|+.+.+.. .+.......|..+++|+.+.+.++ +..+....+ .++++++.+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F--~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF--SNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT--TT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee--ecccccccccccc
Confidence 45667777777764 455455566777767777777664 444433332 5555566666543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00019 Score=64.48 Aligned_cols=113 Identities=23% Similarity=0.285 Sum_probs=86.4
Q ss_pred ccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCC--cCccccCchhhcCCCCCCCeEeccCCccceeeccC
Q 040238 15 LLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKN--SYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT 92 (549)
Q Consensus 15 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 92 (549)
+....-.+..|+.|++.+..+++. ..|-.+++|++|.++.| ++.+..+.. ..++++|++|++++|+|..+....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCCccccccccc
Confidence 444455677888888888877754 35677899999999999 555555544 577799999999999999877766
Q ss_pred CCcCCCCCCEEEccCCCCCCCCh----hhcCCCCccEEEeecC
Q 040238 93 SNTTSQKLKYIGLRSCNLTKFPN----FLQNQYHLLVLDLSDN 131 (549)
Q Consensus 93 ~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~~n 131 (549)
....+.+|..|++.+|..+.+.. .|.-+++|++||-...
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 66688899999999998765542 4566788888875543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=4.7e-05 Score=68.56 Aligned_cols=101 Identities=25% Similarity=0.271 Sum_probs=58.7
Q ss_pred CCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh--hhcCCCCc
Q 040238 46 LSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN--FLQNQYHL 123 (549)
Q Consensus 46 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~l~~l~~L 123 (549)
+.+.+.|++-++.+. .+. +..+++.|++|.||-|+|+.+.... .|.+|++|+|..|.|.++.+ .+.++++|
T Consensus 18 l~~vkKLNcwg~~L~-DIs---ic~kMp~lEVLsLSvNkIssL~pl~---rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS---ICEKMPLLEVLSLSVNKISSLAPLQ---RCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCcc-HHH---HHHhcccceeEEeeccccccchhHH---HHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 345556666666555 222 3456666666666666665554432 45666777777766655553 56677777
Q ss_pred cEEEeecCcCCCCCCccccc---ccCCCCcEEE
Q 040238 124 LVLDLSDNRIQGKVPKWLLD---PNMQNLNALN 153 (549)
Q Consensus 124 ~~L~l~~n~l~~~~~~~~~~---~~l~~L~~L~ 153 (549)
+.|.|..|+-.+..+..... ..+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777777655544432210 1456776665
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=5.1e-05 Score=68.32 Aligned_cols=100 Identities=19% Similarity=0.159 Sum_probs=74.5
Q ss_pred CCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCC
Q 040238 22 LRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLK 101 (549)
Q Consensus 22 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 101 (549)
+.+.+.|++-+|.+.++ .....++.|+.|.|+-|.|+...| +..|++|+.|.|..|.|..+.......++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 45677888888888765 345678888888888888874444 677888888888888888887776666888888
Q ss_pred EEEccCCCC-CCCC-----hhhcCCCCccEEE
Q 040238 102 YIGLRSCNL-TKFP-----NFLQNQYHLLVLD 127 (549)
Q Consensus 102 ~L~l~~n~l-~~l~-----~~l~~l~~L~~L~ 127 (549)
.|.|..|.- +.-+ .-++.+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888865 2222 1366788888876
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.0042 Score=33.12 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=12.1
Q ss_pred CcEEECCCCCCCCcccccccC
Q 040238 1 LQFLYLRLNNFSGDLLGSIGN 21 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~ 21 (549)
||+|||++|+++ .+|+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 466777777666 45554544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.0026 Score=66.05 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=59.7
Q ss_pred CCCCCCEEEccCCcCCcc--ccccccCCCCCCEEeCCCC-cCccccC--chhhcCCCCCCCeEeccCCc-cceeeccCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQ--ITSSLRNLSQLFFLDLAKN-SYRGTIK--LDVLLTSWKNLEFLALSLNR-LSVLTKATSN 94 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~--~~~~~~~l~~L~~L~Ls~n-~i~~~~~--~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~ 94 (549)
.++.|+.|.+.++.-... .-.....+++|+.|+++++ ......+ .......+++|+.|+++++. ++..+-....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 357777777776633222 2234456777777777652 1111111 01123455777777777764 3333222222
Q ss_pred cCCCCCCEEEccCCC-CC--CCChhhcCCCCccEEEeecCcC
Q 040238 95 TTSQKLKYIGLRSCN-LT--KFPNFLQNQYHLLVLDLSDNRI 133 (549)
Q Consensus 95 ~~~~~L~~L~l~~n~-l~--~l~~~l~~l~~L~~L~l~~n~l 133 (549)
..+++|++|.+.+|. ++ .+-.....+++|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 246677777766665 32 2223344566677777776653
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.0018 Score=67.22 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=17.2
Q ss_pred CCCCCeEeCcCCc-CCCcCCcchhcCCCCCCeeecCCCc
Q 040238 218 LNILESLVLSHNN-LSGLLPQCLGNSSDELSVLDLQGNN 255 (549)
Q Consensus 218 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~n~ 255 (549)
+++|+.|+++++. +++..-..+....++|++|.+.++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 4555555555554 3333333333333355555544443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.0073 Score=32.18 Aligned_cols=11 Identities=36% Similarity=0.609 Sum_probs=4.5
Q ss_pred CEEEccCCccc
Q 040238 385 QVLNLQNNSLQ 395 (549)
Q Consensus 385 ~~L~l~~n~l~ 395 (549)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.042 Score=27.09 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=3.7
Q ss_pred CCEEEccCCCCC
Q 040238 100 LKYIGLRSCNLT 111 (549)
Q Consensus 100 L~~L~l~~n~l~ 111 (549)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444433
|
... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.00037 Score=70.64 Aligned_cols=88 Identities=25% Similarity=0.189 Sum_probs=41.9
Q ss_pred CCeEeCcCCcCCCcCCcchhcC---CCCCCeeecCCCccCCcCCCcccccCCCCccccCC-CCCcEEEccCCcCCCC---
Q 040238 221 LESLVLSHNNLSGLLPQCLGNS---SDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC-SKLEFLGLGNNQISDT--- 293 (549)
Q Consensus 221 L~~L~Ls~n~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~--- 293 (549)
+..+.|.+|.+.......+... .+.|+.|++++|.+.+..... +...+... ..++.|++..|.++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~------l~~~l~~~~~~l~~L~l~~c~l~~~g~~ 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARL------LCEGLRLPQCLLQTLELVSCSLTSEGAA 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHH------HHhhcccchHHHHHHHhhcccccccchH
Confidence 5666777776664433333222 125666667666665221111 11112222 3455566666655533
Q ss_pred -cCcccCCCCCCCEEEccCccc
Q 040238 294 -FPSWLGTLPNLNVLILRSNIF 314 (549)
Q Consensus 294 -~~~~~~~l~~L~~L~L~~n~l 314 (549)
+...+.....++.++++.|.+
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhcccchhHHHHHhccc
Confidence 223333455566666666654
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.00067 Score=68.80 Aligned_cols=176 Identities=24% Similarity=0.196 Sum_probs=95.7
Q ss_pred hhhhcCCCCCeEeCcCCcCCCcCCcchhcCC----CCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCC
Q 040238 213 SWICNLNILESLVLSHNNLSGLLPQCLGNSS----DELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN 288 (549)
Q Consensus 213 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n 288 (549)
..+...+.|+.|++++|.+.+..-..+.... ..++.|++..|.++..... .+.+.+.....++.++++.|
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~------~l~~~L~~~~~l~~l~l~~n 182 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA------PLAAVLEKNEHLTELDLSLN 182 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH------HHHHHHhcccchhHHHHHhc
Confidence 3455678888888888888744322222221 2466788888777654332 23455666788999999999
Q ss_pred cCCCC----cCcccC----CCCCCCEEEccCcccccccCCC--CCccCCCC-CceeeCCCCccccccChhhhhccccccc
Q 040238 289 QISDT----FPSWLG----TLPNLNVLILRSNIFYGIIKEP--RTDCGFSK-LRIIDLSNNIFIGTLPLKSFLCWNAMKI 357 (549)
Q Consensus 289 ~l~~~----~~~~~~----~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 357 (549)
.+... ++..+. ...++++|++.+|.++...... ......+. +..+++..|++.+. ++.
T Consensus 183 ~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~---g~~-------- 251 (478)
T KOG4308|consen 183 GLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV---GVE-------- 251 (478)
T ss_pred ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH---HHH--------
Confidence 87421 222222 3556777777777665321110 11122233 44455555554322 000
Q ss_pred cccceEEccCCcCcccCchhhcCC-CCCCEEEccCCccccC----CCcccCCCCCCCEeeCCCCcccc
Q 040238 358 VNTTGIILSNNSFDSVIPASIANL-KGLQVLNLQNNSLQGH----IPSCLGNLPNLESLDLSNNKFSG 420 (549)
Q Consensus 358 ~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 420 (549)
.....+..+ ..+++++++.|.+... +.+.+..++.++.|.+++|++..
T Consensus 252 ---------------~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 252 ---------------KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred ---------------HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 111223333 4556666666666532 22344555667777777776653
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.2 Score=27.83 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=6.8
Q ss_pred CCCCEEEccCCccc
Q 040238 382 KGLQVLNLQNNSLQ 395 (549)
Q Consensus 382 ~~L~~L~l~~n~l~ 395 (549)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.2 Score=27.83 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=6.8
Q ss_pred CCCCEEEccCCccc
Q 040238 382 KGLQVLNLQNNSLQ 395 (549)
Q Consensus 382 ~~L~~L~l~~n~l~ 395 (549)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555554
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.94 Score=44.81 Aligned_cols=68 Identities=26% Similarity=0.232 Sum_probs=33.8
Q ss_pred CCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCC
Q 040238 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192 (549)
Q Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 192 (549)
+.+++++++.|.+....|..+.+...+ +.++.|..+.-.-...........+.+++++.|.....+|.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 456777777777766666655432333 44444444321111011111222366677777766655553
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.18 Score=27.94 Aligned_cols=17 Identities=65% Similarity=0.921 Sum_probs=10.8
Q ss_pred CCCCCEeeCCCCccccc
Q 040238 405 LPNLESLDLSNNKFSGQ 421 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~ 421 (549)
+++|+.|+|++|+++..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35667777777776633
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.18 Score=27.94 Aligned_cols=17 Identities=65% Similarity=0.921 Sum_probs=10.8
Q ss_pred CCCCCEeeCCCCccccc
Q 040238 405 LPNLESLDLSNNKFSGQ 421 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~ 421 (549)
+++|+.|+|++|+++..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35667777777776633
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.01 Score=52.50 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=54.4
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.||++.|++.. ....|.-++.|..|+++.|.+. ..|..++.+..+..+++.+|..+ ..|.++...+.++++++-+|
T Consensus 45 tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 45 TVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccC
Confidence 445555555442 2334566677777777777776 66677777777777777777776 66777777777777777777
Q ss_pred cCc
Q 040238 441 HLT 443 (549)
Q Consensus 441 ~l~ 443 (549)
++.
T Consensus 122 ~~~ 124 (326)
T KOG0473|consen 122 EFF 124 (326)
T ss_pred cch
Confidence 654
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.011 Score=52.30 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=76.3
Q ss_pred EECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCC
Q 040238 4 LYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLN 83 (549)
Q Consensus 4 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n 83 (549)
.|++-..++.+....+......+.||++.|.+... -..|.-++.|..|+++.|.+. -.|.+ ++....++.+++..|
T Consensus 23 c~~s~s~~s~~~v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d--~~q~~e~~~~~~~~n 98 (326)
T KOG0473|consen 23 CDLSLSELSEIPVREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKD--AKQQRETVNAASHKN 98 (326)
T ss_pred cCCCHHHhcccchhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhh--HHHHHHHHHHHhhcc
Confidence 34444455555556677888999999999987632 345667778889999999987 77888 888888999999998
Q ss_pred ccceeeccCCCcCCCCCCEEEccCCCC
Q 040238 84 RLSVLTKATSNTTSQKLKYIGLRSCNL 110 (549)
Q Consensus 84 ~i~~~~~~~~~~~~~~L~~L~l~~n~l 110 (549)
..+..+.... ..++++++++.++.+
T Consensus 99 ~~~~~p~s~~--k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 99 NHSQQPKSQK--KEPHPKKNEQKKTEF 123 (326)
T ss_pred chhhCCcccc--ccCCcchhhhccCcc
Confidence 7766655432 578899999888865
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.05 E-value=0.13 Score=44.74 Aligned_cols=61 Identities=20% Similarity=0.116 Sum_probs=30.5
Q ss_pred CCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 279 KLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 279 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
.++.+|-++..|..+..+.+..++.++.|.+.+|.-.+.-.....-.-.++|+.|++++|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 4455666666555555555555666666666655432221111111234566666666655
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=84.26 E-value=0.26 Score=26.70 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=6.1
Q ss_pred CCCCEEEccCCcCC
Q 040238 23 RSLEAIHIAKCNVS 36 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~ 36 (549)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555555544
|
... |
| >PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains | Back alignment and domain information |
|---|
Probab=83.82 E-value=1.3 Score=38.86 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=12.7
Q ss_pred CceeeeehhhhhhhhhhHHHHHH
Q 040238 500 DWKIILIGYAGGLVAGLVVGFNF 522 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~ 522 (549)
.+..|++|+++|++.+++|++++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~ 57 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIV 57 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHH
Confidence 45566666666655544444443
|
They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated []. |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.58 E-value=0.15 Score=44.51 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=39.2
Q ss_pred CCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCc---CCCCCCEEEccCC-CCCCCC-hhhcCCCC
Q 040238 48 QLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT---TSQKLKYIGLRSC-NLTKFP-NFLQNQYH 122 (549)
Q Consensus 48 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~---~~~~L~~L~l~~n-~l~~l~-~~l~~l~~ 122 (549)
.++.+|-++..|...--.. +..++.++.|.+.+| ..+.+..... -.++|+.|++++| .|++-- ..+..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~--L~~l~~i~~l~l~~c--k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEH--LRDLRSIKSLSLANC--KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHH--Hhccchhhhheeccc--cchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 3555665555554322222 455555555556555 3332221110 3456666666666 333221 35566666
Q ss_pred ccEEEeec
Q 040238 123 LLVLDLSD 130 (549)
Q Consensus 123 L~~L~l~~ 130 (549)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 66666654
|
|
| >smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | Back alignment and domain information |
|---|
Probab=80.39 E-value=1.8 Score=24.06 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=7.0
Q ss_pred CCCeEeccCCcccee
Q 040238 74 NLEFLALSLNRLSVL 88 (549)
Q Consensus 74 ~L~~L~Ls~n~i~~~ 88 (549)
+|+.|+++.|+|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 444444444444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 549 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 7e-24 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-23 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 5e-17 | ||
| 1m10_B | 290 | Crystal Structure Of The Complex Of Glycoprotein Ib | 8e-04 | ||
| 1m0z_A | 290 | Crystal Structure Of The Von Willebrand Factor Bind | 8e-04 | ||
| 1u0n_D | 265 | The Ternary Von Willebrand Factor A1-Glycoprotein I | 9e-04 | ||
| 3p72_A | 269 | Structure Of Platelet Glycoprotein 1b Alpha With A | 9e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290 | Back alignment and structure |
|
| >pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290 | Back alignment and structure |
|
| >pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265 | Back alignment and structure |
|
| >pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 347 bits (892), Expect = e-111
Identities = 152/578 (26%), Positives = 234/578 (40%), Gaps = 98/578 (16%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L+FL + NNFS + +G+ +L+ + I+ +SG + ++ ++L L+++ N +
Sbjct: 202 LEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLT-KFPNFLQN 119
G I L K+L++L+L+ N+ + + L + L + P F +
Sbjct: 261 GPIPPLPL----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG-FDQHLVVLPANKGDLLT 178
L L LS N G++P L M+ L L++S N +G + L L A+ LLT
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNEFSGELPESLTNLSAS---LLT 372
Query: 179 FDLSSNNLQGPLP----VPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSG 233
DLSSNN GP+ P T+ L NN TG+IP + N + L SL LS N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 234 LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERR--------------IPRSLINCSK 279
+P LG+ S +L L L N G IP + + IP L NC+
Sbjct: 433 TIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339
L ++ L NN+++ P W+G L NL +L L +N F G I P L +DL+ N+
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL 549
Query: 340 FIGTLPLKSFLCWNAMKIVNTTGII----------------LSNNSFDSVIPASIANLKG 383
F GT+P F + G + F + + L
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 384 LQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443
N+ + GH N ++ LD+S N SG IP+++ + +L N+ N ++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 444 GLIPP------------------------------------------------GKQFATF 455
G IP QF TF
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Query: 456 DNTSFDSNSGLCGRPLSKGCESDVAPANEDHTKGSEES 493
F +N GLCG PL + C+ A H +
Sbjct: 730 PPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHHHH 766
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 1e-80
Identities = 135/459 (29%), Positives = 199/459 (43%), Gaps = 40/459 (8%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+ LN + S+ +L LE++ ++ +++G + S + + L LDL++NS
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLS 113
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLT-KFPNFLQN 119
G + L S L+FL +S N L K + L+ + L + +++
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173
Query: 120 QY---HLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPA--NKG 174
L L +S N+I G V NL L++S N + +P +
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNFST------GIPFLGDCS 223
Query: 175 DLLTFDLSSNNLQGPLPVPPPGTIHYL----ASNNSLTGEIPSWICNLNILESLVLSHNN 230
L D+S N L G T L S+N G IP L L+ L L+ N
Sbjct: 224 ALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280
Query: 231 LSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQI 290
+G +P L + D L+ LDL GN+F+G +P +CS LE L L +N
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP----------FFGSCSLLESLALSSNNF 330
Query: 291 SDTFP-SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSF 349
S P L + L VL L N F G + E T+ + L +DLS+N F G +
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-SASLLTLDLSSNNFSGPIL--PN 387
Query: 350 LCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLE 409
LC N + L NN F IP +++N L L+L N L G IPS LG+L L
Sbjct: 388 LCQNPKN--TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 410 SLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448
L L N G+IPQ+L+ + LE + N LTG IP
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-39
Identities = 55/238 (23%), Positives = 92/238 (38%), Gaps = 24/238 (10%)
Query: 216 CNLNILESLVLSHNNLS---GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPR 272
C + + S+ LS L+ + L + + L L L ++ G++
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLT-GLESLFLSNSHINGSVS----------- 94
Query: 273 SLINCSKLEFLGLGNNQISDTFPS--WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKL 330
+ L L L N +S + LG+ L L + SN K + L
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS-GGLKLNSL 153
Query: 331 RIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQ 390
++DLS N G + L + +S N + ++ L+ L++
Sbjct: 154 EVLDLSANSISGANVVGWVLSDG---CGELKHLAISGNKISGDVD--VSRCVNLEFLDVS 208
Query: 391 NNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448
+N+ IP LG+ L+ LD+S NK SG + + T L+ N+S N G IPP
Sbjct: 209 SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 384 LQVLNLQNNSLQ---GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440
+ ++L + L + S L +L LESL LSN+ +G + L ++S N
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110
Query: 441 HLTGLIPPGKQFA 453
L+G +
Sbjct: 111 SLSGPVTTLTSLG 123
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 4e-65
Identities = 86/307 (28%), Positives = 118/307 (38%), Gaps = 50/307 (16%)
Query: 172 NKGDLLTFDLSSNNLQGPLPVPP-----PGTIH-YLASNNSLTGEIPSWICNLNILESLV 225
+ DLS NL P P+P P Y+ N+L G IP I L L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 226 LSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGL 285
++H N+SG +P L L LD N GT+P S+ + L +
Sbjct: 108 ITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPP----------SISSLPNLVGITF 156
Query: 286 GNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP 345
N+IS P G+ L + +S N G +P
Sbjct: 157 DGNRISGAIPDSYGSFSKL-------------------------FTSMTISRNRLTGKIP 191
Query: 346 LKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNL 405
N + LS N + + K Q ++L NSL + +G
Sbjct: 192 PTFANL-------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243
Query: 406 PNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSG 465
NL LDL NN+ G +PQ L +L FL NVS N+L G IP G FD +++ +N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 466 LCGRPLS 472
LCG PL
Sbjct: 304 LCGSPLP 310
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 1e-35
Identities = 73/405 (18%), Positives = 120/405 (29%), Gaps = 124/405 (30%)
Query: 18 SIGNLRSL----EAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWK 73
+GN +L G + + ++ LDL+ + + L +
Sbjct: 17 DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76
Query: 74 NLEFLALS-LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNR 132
L FL + +N L G P + L L ++
Sbjct: 77 YLNFLYIGGINNLV-----------------G-------PIPPAIAKLTQLHYLYITHTN 112
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192
+ G +P +L ++ L L+
Sbjct: 113 VSGAIPDFL--SQIKTLVTLDF-------------------------------------- 132
Query: 193 PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQ 252
S N+L+G +P I +L L + N +SG +P G+ S + + +
Sbjct: 133 ----------SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 253 GNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSN 312
N G IP + N + L F+ L N + G+ N + L N
Sbjct: 183 RNRLTGK----------IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 313 IFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS 372
+ + L +DL NN GT
Sbjct: 232 SLAFDLGKVGL---SKNLNGLDLRNNRIYGT----------------------------- 259
Query: 373 VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417
+P + LK L LN+ N+L G IP GNL + +NNK
Sbjct: 260 -LPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-33
Identities = 75/343 (21%), Positives = 116/343 (33%), Gaps = 70/343 (20%)
Query: 9 NNFSGDLLGSIGNLRSLEAIHIAKCNVSGQ--ITSSLRNLSQLFFLDLAK-NSYRGTIKL 65
+ G L + + + ++ N+ I SSL NL L FL + N+ G I
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 66 DVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLV 125
+ L +L ++ +S G P+FL L+
Sbjct: 96 A--IAKLTQLHYLYITHTNVS-----------------G-------AIPDFLSQIKTLVT 129
Query: 126 LDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNN 185
LD S N + G +P + ++ NL + N ++G +P + G S
Sbjct: 130 LDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISG------AIPDSYGSF------SKL 175
Query: 186 LQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDE 245
S N LTG+IP NLN L + LS N L G G+
Sbjct: 176 FT-----------SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-N 222
Query: 246 LSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305
+ L N+ + + L L L NN+I T P L L L+
Sbjct: 223 TQKIHLAKNSLAFDLG-----------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 306 VLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKS 348
L + N G I P + + +NN + PL +
Sbjct: 272 SLNVSFNNLCGEI--P-QGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 68/316 (21%), Positives = 107/316 (33%), Gaps = 96/316 (30%)
Query: 1 LQFLYLR-LNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSY 59
L FLY+ +NN G + +I L L ++I NVSG I L + L LD + N+
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 60 RGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQN 119
GT+ P + +
Sbjct: 138 SGTL--------------------------------------------------PPSISS 147
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNL-NALNISHNFLTGFDQHLVVLPANKG--DL 176
+L+ + NRI G +P + L ++ IS N LTG +P +L
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYG--SFSKLFTSMTISRNRLTG------KIPPTFANLNL 199
Query: 177 LTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236
DLS N L G+ + + + L+ N+L+ L
Sbjct: 200 AFVDLSRNM---------------------LEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS 296
+ +G S L+ LDL+ N +GT +P+ L L L + N + P
Sbjct: 239 K-VGLSK-NLNGLDLRNNRIYGT----------LPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 297 WLGTLPNLNVLILRSN 312
G L +V +N
Sbjct: 287 -GGNLQRFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 13/154 (8%)
Query: 296 SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355
SWL T N + G++ TD ++ +DLS P+ S L
Sbjct: 26 SWLPTTDCCN------RTWLGVL--CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA---- 73
Query: 356 KIVNTTGIILSN-NSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLS 414
+ + + N+ IP +IA L L L + + ++ G IP L + L +LD S
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 415 NNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448
N SG +P + L L N ++G IP
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 56/263 (21%), Positives = 91/263 (34%), Gaps = 59/263 (22%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L +LY+ N SG + + +++L + + +SG + S+ +L L + N
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
G I S K + +S NRL+ G K P N
Sbjct: 163 GAIPDSYGSFS-KLFTSMTISRNRLT-----------------G-------KIPPTFAN- 196
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLP--ANKGDLLT 178
+L +DLS N ++G + +N ++++ N L L +L
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAF------DLGKVGLSKNLNG 248
Query: 179 FDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 238
DL +N + G +P + L L SL +S NNL G +PQ
Sbjct: 249 LDLRNNR---------------------IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ- 286
Query: 239 LGNSSDELSVLDLQGNNFFGTIP 261
G + V N P
Sbjct: 287 -GGNLQRFDVSAYANNKCLCGSP 308
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 1e-59
Identities = 87/464 (18%), Positives = 152/464 (32%), Gaps = 34/464 (7%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L L + N S L L+ +++ +S + + L L L NS +
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN---FL 117
KNL L LS N LS K + + L+ + L + + + +
Sbjct: 111 KIKNN--PFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSEELDI 167
Query: 118 QNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLL 177
L L+LS N+I+ P + L L +++ L + L +
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCF--HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225
Query: 178 TFDLSSNNLQGPLPVPPPGTIHYLA---------SNNSLTGEIPSWICNLNILESLVLSH 228
LS++ L T L S N+L L LE L +
Sbjct: 226 NLSLSNSQLST----TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 229 NNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN 288
NN+ L L + L+L+ + +I + + S LE L + +N
Sbjct: 282 NNIQHLFSHSLHGLF-NVRYLNLKRSFTKQSISLASLPK-IDDFSFQWLKCLEHLNMEDN 339
Query: 289 QISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRT--DCGFSKLRIIDLSNNIFIGTLPL 346
I + L NL L L ++ T S L I++L+ N I +
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIES 398
Query: 347 KSFLCWNAMKIVNTTGIILSNNSFDSVIPAS-IANLKGLQVLNLQNNSLQGHIPSCLGNL 405
+F + + + L N + L+ + + L N + +
Sbjct: 399 DAF-----SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453
Query: 406 PNLESLDLSNNKFSG--QIPQQLVELTFLEFFNVSDNHLTGLIP 447
P+L+ L L P L L ++S+N++ +
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 2e-57
Identities = 89/514 (17%), Positives = 163/514 (31%), Gaps = 59/514 (11%)
Query: 1 LQFLYLRLNNFSG--DLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS 58
LQ L L N I SL+ + ++ + + +LF L L
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 59 YRGTI-KLDVLLTSWKNLEFLALSLNRLSVLTKAT-SNTTSQKLKYIGLRSCNLTKF-PN 115
++ + L + ++ L+LS ++LS + T L + L NL +
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266
Query: 116 FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG--FDQHLVVLPANK 173
L L N IQ L + N+ LN+ +F L +
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLH--GLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324
Query: 174 ----GDLLTFDLSSNNLQGPLPVPPPGTIH----YLASNNSLTGEIPSWIC---NLNILE 222
L ++ N++ G G I+ L+++ + + + + L
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384
Query: 223 SLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEF 282
L L+ N +S + L VLDL N + + +
Sbjct: 385 ILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELT---------GQEWRGLENIFE 434
Query: 283 LGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIG 342
+ L N+ + +P+L L+LR + P L I+DLSNN I
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIA 493
Query: 343 TLPLKSFLCWNAMKIVNTTG---------------------------IILSNNSFDSVIP 375
+ ++I++ + L +N FD +
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553
Query: 376 ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQL-VELTFLEF 434
+L L++++L N+L S N +L+SL+L N + + L
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613
Query: 435 FNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCG 468
++ N F + N + + L
Sbjct: 614 LDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 2e-48
Identities = 85/438 (19%), Positives = 151/438 (34%), Gaps = 47/438 (10%)
Query: 22 LRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81
++ +++ + ++ SQL LD+ N+ L L+ L L
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQ 81
Query: 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNF-LQNQYHLLVLDLSDNRIQGKVPKW 140
N LS L+ T + L + L S ++ K N Q +L+ LDLS N +
Sbjct: 82 HNELSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140
Query: 141 LLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHY 200
+ ++NL L +S+N + + + AN L +LSSN
Sbjct: 141 QV--QLENLQELLLSNNKIQALKSEELDIFANSS-LKKLELSSNQ--------------- 182
Query: 201 LASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ--CLGNSSDELSVLDLQGNNFFG 258
+ P + L L L++ L L + CL ++ + L L +
Sbjct: 183 ------IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 259 TIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGII 318
T TF + + L L L N ++ LP L L N +
Sbjct: 237 TSNTTF--------LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Query: 319 KEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTG---IILSNNSFDSVIP 375
+ G +R ++L + ++ L S + + + +N +
Sbjct: 289 --SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346
Query: 376 ASIANLKGLQVLNLQNN--SLQGHIPSCLGNLPN--LESLDLSNNKFSGQIPQQLVELTF 431
L L+ L+L N+ SL+ +L + L L+L+ NK S L
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406
Query: 432 LEFFNVSDNHLTGLIPPG 449
LE ++ N + +
Sbjct: 407 LEVLDLGLNEIGQELTGQ 424
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 2e-37
Identities = 70/312 (22%), Positives = 110/312 (35%), Gaps = 39/312 (12%)
Query: 148 NLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA----- 202
+ + SH LT L P N + +L+ N L+ P +
Sbjct: 5 SHEVADCSHLKLTQVPDDL---PTN---ITVLNLTHNQLRRL----PAANFTRYSQLTSL 54
Query: 203 --SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260
N+++ P L +L+ L L HN LS L + + L+ L L N+
Sbjct: 55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT-NLTELHLMSNSIQKIK 113
Query: 261 PNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320
N F+ L L L +N +S T L NL L+L +N + E
Sbjct: 114 NNPFV----------KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163
Query: 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA- 379
S L+ ++LS+N I F I G+ L+N + +
Sbjct: 164 ELDIFANSSLKKLELSSN-QIKEFSPGCFH-----AIGRLFGLFLNNVQLGPSLTEKLCL 217
Query: 380 --NLKGLQVLNLQNNSLQGHIPSCLGNL--PNLESLDLSNNKFSGQIPQQLVELTFLEFF 435
++ L+L N+ L + L NL LDLS N + L LE+F
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277
Query: 436 NVSDNHLTGLIP 447
+ N++ L
Sbjct: 278 FLEYNNIQHLFS 289
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 6e-52
Identities = 80/490 (16%), Positives = 150/490 (30%), Gaps = 51/490 (10%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
LQ L L G+ +L L + + + + LS L L + +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK-----FPN 115
+ + K L+ L ++ N + + L+++ L S +
Sbjct: 114 SLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 116 FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGD 175
Q L LDLS N + P L+ L + +NF + + +
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228
Query: 176 LLTFDLSSNNLQGPLPVPPPGTIH----------YLASNNSLTGEIPSWICNLNILESLV 225
+ L +G L + LA + +I L + S
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 226 LSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERR------IPRSLINCSK 279
L + + L +++ + F + + S ++
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348
Query: 280 LEFLGLGNNQIS--DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
LEFL L N +S +L L L N + G +L +D +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQH 405
Query: 338 NIFIGTLPLKSFLCWNAMKIV-----NTTGII--------------LSNNSF-DSVIPAS 377
+ FL + + +T ++ NSF ++ +P
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 378 IANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437
L+ L L+L L+ P+ +L +L+ L++S+N F L L+ +
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525
Query: 438 SDNHLTGLIP 447
S NH+
Sbjct: 526 SLNHIMTSKK 535
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 9e-50
Identities = 88/474 (18%), Positives = 156/474 (32%), Gaps = 42/474 (8%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCN-VSGQITSSLRNLSQLFFLDLAKNSY 59
LQ L N + IG+L++L+ +++A S ++ NL+ L LDL+ N
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 60 RGTIK--LDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF--PN 115
+ L VL L LSLN ++ + L + LR+ +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKT 219
Query: 116 FLQNQYHLLVLDLSDNRIQGKVPKWLLDP----NMQNLNALNISHNFLTGFDQHLVVLPA 171
+Q L V L + + D + NL +L + ++ L
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279
Query: 172 NKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA-SNNSLTGEIPSWICNLNILESLVLSHNN 230
++ +F L S ++ +L N L + L+ +
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-----FPTLKLKSLKRLTFTS 334
Query: 231 LSGLLPQCLGNSSDELSVLDLQGN--NFFGTIPNTFI-------------KERRIPRSLI 275
G + L LDL N +F G + + + +
Sbjct: 335 NKGGNAFSEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393
Query: 276 NCSKLEFLGLGNNQISDTFP-SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334
+LE L ++ + S +L NL L + G S L ++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLK 451
Query: 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSL 394
++ N F F + ++ LS + + P + +L LQVLN+ +N+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLD-----LSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 395 QGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVEL-TFLEFFNVSDNHLTGLIP 447
L +L+ LD S N Q+L + L F N++ N
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 5e-40
Identities = 85/464 (18%), Positives = 139/464 (29%), Gaps = 72/464 (15%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+ L L N S + L+ + +++C + + ++LS L L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
+ +L+ L L+ L + +
Sbjct: 90 SLALG--AFSGLSSLQKLVAVETNLASLE------------------------NFPIGHL 123
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFD-QHLVVLPANKGDLLTF 179
L L+++ N IQ N+ NL L++S N + L VL L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
DL S N + P + L L L +N S + +
Sbjct: 183 DL---------------------SLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTC 220
Query: 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299
L V L F ++ L N + EF + D
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKF-DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279
Query: 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIF--IGTLPLKSF--LCWNAM 355
L N++ L S + + ++L N F TL LKS L + +
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFS----YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335
Query: 356 KIVNTTGII---------LSNN--SFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404
K N + LS N SF S L+ L+L N + + S
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG 394
Query: 405 LPNLESLDLSNNKFSGQIPQQ-LVELTFLEFFNVSDNHLTGLIP 447
L LE LD ++ + L L + ++S H
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 6e-38
Identities = 77/418 (18%), Positives = 134/418 (32%), Gaps = 51/418 (12%)
Query: 1 LQFLYLRLNNFSGDLL-GSIGNLRSLEAIHIAKCNVSGQIT------SSLRNLSQLFFLD 53
L L LR N S +++ I L LE + + S+L L L +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 54 LAKNSYRGTIKLDVLLTSW-KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLR------ 106
+ + L + N+ +L + + + N Q L+ + +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 107 -----------SCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNIS 155
+ N + L LDLS N + K D +L L++S
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 156 HNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA----SNNSLTGEI 211
N + + + L L D +NL+ ++ L S+
Sbjct: 382 FNGVITMSSNFLGLEQ----LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 212 PSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIP 271
L+ LE L ++ N+ + L+ LDL P F
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN------ 491
Query: 272 RSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLR 331
+ S L+ L + +N L +L VL N K+ S L
Sbjct: 492 ----SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-PSSLA 546
Query: 332 IIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNL 389
++L+ N F T +SFL W I + +++ + P+ +G+ VL+L
Sbjct: 547 FLNLTQNDFACTCEHQSFLQW----IKDQRQLLVEVERMECATPSD---KQGMPVLSL 597
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 5e-28
Identities = 71/383 (18%), Positives = 119/383 (31%), Gaps = 52/383 (13%)
Query: 105 LRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ 164
N K P+ L LDLS N ++ + L L++S + +
Sbjct: 14 CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIED 69
Query: 165 HLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL-------ASNNSLTGEIPSWICN 217
+ L T L+ N +Q G L A +L I +
Sbjct: 70 GAY---QSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 218 LNILESLVLSHNNLSGL-LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276
L L+ L ++HN + LP+ N + L LDL N ++P ++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLS 336
L L N ++ P + L+ L LR+N + G + L + L
Sbjct: 182 ------LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV-MKTCIQGLAGLEVHRLV 233
Query: 337 NNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD---SVIPASIANLKGLQVLNLQNNS 393
F L+ F + N T D I L + +L + +
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 394 LQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQL-------------------VELTFLEF 434
++ + L+L N KF +L V+L LEF
Sbjct: 294 IERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 435 FNVSDNHLTGLIPPGKQFATFDN 457
++S N L+ + +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTS 374
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-28
Identities = 56/273 (20%), Positives = 95/273 (34%), Gaps = 19/273 (6%)
Query: 177 LTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236
+T+ N P T + S N L + L+ L LS + +
Sbjct: 10 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS 296
+ S LS L L GN F S L+ L ++
Sbjct: 70 GAYQSLS-HLSTLILTGNPIQSLALGAF----------SGLSSLQKLVAVETNLASLENF 118
Query: 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMK 356
+G L L L + N+ K P + L +DLS+N I ++ + M
Sbjct: 119 PIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMP 176
Query: 357 IVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS-CLGNLPNLESLDLSN 415
++N + + LS N + + P + ++ L L L+NN ++ C+ L LE L
Sbjct: 177 LLNLS-LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 416 NKFSGQIPQQLVE---LTFLEFFNVSDNHLTGL 445
+F + + + L L + + L L
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 2e-51
Identities = 86/460 (18%), Positives = 143/460 (31%), Gaps = 38/460 (8%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L L L N ++ ++L+ + + +S L N L L L N
Sbjct: 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT-SNTTSQKLKYIGLRSCNLTKFPNFLQN 119
+ L+ L N + L+K S+ + L ++ +
Sbjct: 143 SIK--LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
L+ + + K L + +Q+L + + +
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESI 259
Query: 180 DLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTGEIPSWICNLNILESLVLSHNNLS 232
+L + T H + + L+ E+PS + L+ L+ LVLS N
Sbjct: 260 NLQKHYFFN----ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314
Query: 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQI-- 290
L N L+ L ++GN + L N L L L ++ I
Sbjct: 315 NLCQISASNFP-SLTHLSIKGNTKRLELG---------TGCLENLENLRELDLSHDDIET 364
Query: 291 SDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFL 350
SD L L +L L L N + + +L ++DL+ + +S
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSL--KTEAFKECPQLELLDLAFT-RLKVKDAQSPF 421
Query: 351 CWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSC---LGNLPN 407
+ + LS++ D L LQ LNLQ N L L
Sbjct: 422 Q----NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477
Query: 408 LESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
LE L LS S L + ++S N LT
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 3e-41
Identities = 84/452 (18%), Positives = 149/452 (32%), Gaps = 53/452 (11%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQL--FFLDLAKNS 58
L+ LYL N+ S L L+ + + + +L Q L+L N
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 59 YRGTIKLDVLLTSWKNLEFLALSLNRLSVLT-KATSNTTSQKLKYIGLRSCNLTKFPNFL 117
++ + L + ++ K N+T Q L + +
Sbjct: 191 ---IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247
Query: 118 ---QNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKG 174
+ + ++L + L L+++ L+ LV L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQELDLTATHLSELPSGLVGLST--- 302
Query: 175 DLLTFDLSSNNLQGPLPVPPPGTIH--------YLASNNSLTGEIPSWICNLNILESLVL 226
L LS+N + + + N + NL L L L
Sbjct: 303 -LKKLVLSANKFENL----CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357
Query: 227 SHNNL--SGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTF---------------IKERR 269
SH+++ S L N S L L+L N F +K +
Sbjct: 358 SHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416
Query: 270 IPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSN-IFYGIIKEPRTDCGFS 328
N L+ L L ++ + + LP L L L+ N G I++ +
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476
Query: 329 KLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLN 388
+L I+ LS + ++ +F M V+ LS+N S ++++LKG+ LN
Sbjct: 477 RLEILVLSFC-DLSSIDQHAFTSLKMMNHVD-----LSHNRLTSSSIEALSHLKGI-YLN 529
Query: 389 LQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420
L +N + +PS L L +++L N
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 6e-38
Identities = 82/437 (18%), Positives = 139/437 (31%), Gaps = 58/437 (13%)
Query: 22 LRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81
S E + + + ++ L L FLDL + + S L+ L L+
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH--EDTFQSQHRLDTLVLT 89
Query: 82 LNRLSVLTKAT-SNTTSQKLKYIGLRSCNLTKF-PNFLQNQYHLLVLDLSDNRIQGKVPK 139
N L + + S + LK++ ++ L NQ L L L N I
Sbjct: 90 ANPLIFMAETALSGPKA--LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147
Query: 140 WLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQG--PLPVPPPGT 197
+ L L+ +N + + + L+ +L+ N++ G P
Sbjct: 148 KGF--PTEKLKVLDFQNNAIHYLSKEDMSSLQQA-TNLSLNLNGNDIAGIEPGAFDSAVF 204
Query: 198 IHYLASNNSLTGEIPSWICNLNI--LESLVLSHNNLSGLLPQCL-GNSSDELSVLDLQGN 254
I + N I L + + P G + ++LQ +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264
Query: 255 NFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF 314
FF NTF S L+ L L +S PS L L L L+L +N F
Sbjct: 265 YFFNISSNTFH----------CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313
Query: 315 YGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI 374
+ + F L + + N L
Sbjct: 314 ENLC--QISASNFPSLTHLSIKGNTKRLELGTGCL------------------------- 346
Query: 375 PASIANLKGLQVLNLQNNSLQ--GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFL 432
NL+ L+ L+L ++ ++ L NL +L+SL+LS N+ + E L
Sbjct: 347 ----ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402
Query: 433 EFFNVSDNHLTGLIPPG 449
E +++ L
Sbjct: 403 ELLDLAFTRLKVKDAQS 419
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 1e-34
Identities = 63/352 (17%), Positives = 107/352 (30%), Gaps = 33/352 (9%)
Query: 105 LRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ 164
+ L + P L N L+ S N + + + NL L+++ + +
Sbjct: 19 CENLGLNEIPGTLPN--STECLEFSFNVLPT-IQNTTF-SRLINLTFLDLTRCQIYWIHE 74
Query: 165 HLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL-------ASNNSLTGEIPSWICN 217
++ L T L++N L + ++ + N
Sbjct: 75 DTF---QSQHRLDTLVLTANPLIFM----AETALSGPKALKHLFFIQTGISSIDFIPLHN 127
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC 277
LESL L N++S + + L VLD Q N SL
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEK-LKVLDFQNNAIHYLSKEDM-------SSLQQA 179
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
+ L L L N I+ L +I + + L + +
Sbjct: 180 TNLS-LNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237
Query: 338 NIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGH 397
+ F + ++ I L + F ++ + GLQ L+L L
Sbjct: 238 MD-DEDISPAVF---EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292
Query: 398 IPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
+PS L L L+ L LS NKF L ++ N + G
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 5e-18
Identities = 43/245 (17%), Positives = 71/245 (28%), Gaps = 48/245 (19%)
Query: 222 ESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLE 281
++ + L+ + P L NS L+ N TF L
Sbjct: 15 KTYNCENLGLNEI-PGTLPNS---TECLEFSFNVLPTIQNTTFS----------RLINLT 60
Query: 282 FLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFI 341
FL L QI + L+ L+L +N +I ++
Sbjct: 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN------------------PLIFMAETALS 102
Query: 342 GTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSC 401
G LK + S+ + N K L+ L L +N +
Sbjct: 103 GPKALKH--------------LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148
Query: 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLE--FFNVSDNHLTGLIPPGKQFATFDNTS 459
L+ LD NN + + L N++ N + G+ P A F + +
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208
Query: 460 FDSNS 464
F
Sbjct: 209 FGGTQ 213
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 5e-50
Identities = 67/450 (14%), Positives = 135/450 (30%), Gaps = 59/450 (13%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+ NL+ L + + C ++ + L+ L ++ +++A N
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286
Query: 61 GTIKLDVLLTS------WKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP 114
+L + + ++ + + N L TS +KL + L
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346
Query: 115 NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKG 174
++ L L+L+ N+I +P + + L+ +HN L +
Sbjct: 347 PAFGSEIKLASLNLAYNQITE-IPANFCG-FTEQVENLSFAHNKLKYIPNIFDA--KSVS 402
Query: 175 DLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234
+ D S N + + + + S+ LS+N +S
Sbjct: 403 VMSAIDFSYNEIGS--------------VDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448
Query: 235 LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294
+ S LS ++L GN N+ + + N L + L N+++
Sbjct: 449 PKELFSTGS-PLSSINLMGNMLTEIPKNSL---KDENENFKNTYLLTSIDLRFNKLTKLS 504
Query: 295 PSW-LGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWN 353
+ TLP L + L N F P S L+ + N
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSKF---PTQPLNSSTLKGFGIRNQR-------------- 547
Query: 354 AMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDL 413
N P I L L + +N ++ + + PN+ LD+
Sbjct: 548 ----------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDI 594
Query: 414 SNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443
+N + + + +
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 2e-49
Identities = 79/484 (16%), Positives = 149/484 (30%), Gaps = 73/484 (15%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L + + + S I N++ ++ ++ L++L + + +
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219
Query: 61 GTIKLDVL----LTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCN-LTKFPN 115
+ + + L + L L + + +C LTK P
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLK------------DLTDVEVYNCPNLTKLPT 267
Query: 116 FLQNQYHLLVLDLSDNRIQGKVPKWLLD-------PNMQNLNALNISHNFLTGFDQHLVV 168
FL+ + +++++ NR + D P + + + I +N +L
Sbjct: 268 FLKALPEMQLINVACNRGIS-GEQLKDDWQALADAPVGEKIQIIYIGYN-------NLKT 319
Query: 169 LPANKG-----DLLTFDLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTGEIPSWIC 216
P L + N L+G LP + N +T ++
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-----AFGSEIKLASLNLAYNQITEIPANFCG 374
Query: 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276
+E+L +HN L + S +S +D N F + +
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP---LDPTPFK 431
Query: 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE-----PRTDCGFSKLR 331
+ + L NNQIS T L+ + L N+ I K L
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491
Query: 332 IIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQN 391
IDL N + L + GI LS NSF P N L+ ++N
Sbjct: 492 SIDLRFN-KLTKLSDDFRAT----TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545
Query: 392 ------NSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
N P + P+L L + +N + +++ + ++ DN +
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISI 602
Query: 446 IPPG 449
Sbjct: 603 DLSY 606
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 6e-47
Identities = 62/459 (13%), Positives = 132/459 (28%), Gaps = 58/459 (12%)
Query: 18 SIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVL--LTSWKNL 75
S+ + + + + SG++ ++ L++L L L + + +L +++ +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 76 EFLALSLNRLSVLT-KATSNTTSQKLKYIGLRSCNLTKF-PNFLQNQYHLLVLDLSDNRI 133
E L + S K + + N I
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 134 QGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP 193
V K ++ + L + ++ + +
Sbjct: 196 TF-VSKAVM--RLTKLRQFYMGNSPFVAE------NICEAWENE--NSEYAQQYKTED-L 243
Query: 194 PPGTIHYLA----SNNSLTGEIPSWICNLNILESLVLSHNNLSGL--LPQCLGNSSD--- 244
+ L N ++P+++ L ++ + ++ N L +D
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303
Query: 245 --ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLP 302
++ ++ + NN T P + SL KL L NQ+ P+ G+
Sbjct: 304 GEKIQIIYIGYNNLK-TFP--------VETSLQKMKKLGMLECLYNQLEGKLPA-FGSEI 353
Query: 303 NLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTG 362
L L L N I ++ + ++N + +P + +
Sbjct: 354 KLASLNLAYNQITEIPANFCGFT--EQVENLSFAHN-KLKYIPNIFDAK----SVSVMSA 406
Query: 363 IILSNNSFDSV-------IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415
I S N SV + + + +NL NN + L S++L
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466
Query: 416 NKFSG-------QIPQQLVELTFLEFFNVSDNHLTGLIP 447
N + + L ++ N LT L
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 1e-37
Identities = 46/350 (13%), Positives = 100/350 (28%), Gaps = 49/350 (14%)
Query: 117 LQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDL 176
L + + L L G+VP + + L L + + + P
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIG--QLTELEVLALGSHGEKV--NERLFGPKGISAN 132
Query: 177 LT---FDLSSNNLQGPLPVPPPGT-----IHYLASNNSLTGEIPSWICNLNILESLVLSH 228
++ + Q P I +++ I +
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192
Query: 229 NNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKE---------RRIPRSLINCSK 279
NN++ + + + + L + + F + + N
Sbjct: 193 NNITFV-SKAVMRLTK-LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250
Query: 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339
L + + N P++L LP + ++ + N R I
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACN------------------RGISGEQLK 292
Query: 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV-IPASIANLKGLQVLNLQNNSLQGHI 398
+ + I + N+ + + S+ +K L +L N L+G +
Sbjct: 293 DDWQALADAPVG------EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346
Query: 399 PSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448
P+ G+ L SL+L+ N+ + +E + + N L +
Sbjct: 347 PA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 6e-25
Identities = 36/271 (13%), Positives = 75/271 (27%), Gaps = 19/271 (7%)
Query: 193 PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQ 252
P ++ + + + + + L L SG +P +G + EL VL L
Sbjct: 55 QPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALG 113
Query: 253 GNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSN 312
+ P+ + E TF + +++ N
Sbjct: 114 SHGEKVNERLF------GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167
Query: 313 IFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS 372
++ K I +N I + K+ M++ + N+ F +
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSN-NITFVS-KAV-----MRLTKLRQFYMGNSPFVA 220
Query: 373 VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFL 432
N + NL +L +++ N ++P L L +
Sbjct: 221 ENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275
Query: 433 EFFNVSDNHLTGLIPPGKQFATFDNTSFDSN 463
+ NV+ N + +
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEK 306
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 1e-45
Identities = 83/496 (16%), Positives = 152/496 (30%), Gaps = 59/496 (11%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
LQ R S +L+ + ++ N I+ +++ L++L + A + +
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLT--NRITFISKAIQRLTKLQIIYFANSPFT 461
Query: 61 GTIK----LDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCN-LTKFPN 115
D K E LS + L L + L +C +T+ P+
Sbjct: 462 YDNIAVDWEDANSDYAKQYENEELSWSNLK------------DLTDVELYNCPNMTQLPD 509
Query: 116 FLQNQYHLLVLDLSDNRIQGKVPKWLLDP-------NMQNLNALNISHNFLTGFDQHLVV 168
FL + L L+++ NR + + +N L F +
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569
Query: 169 LPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWIC-NLNILESLVL 226
L D N ++ + L N + EIP C + +E L
Sbjct: 570 --QKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626
Query: 227 SHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLG 286
SHN L + S + +D N N + L
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC-----SMDDYKGINASTVTLS 681
Query: 287 NNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE-----PRTDCGFSKLRIIDLSNNIFI 341
N+I T ++ +IL +N+ I + L IDL N +
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KL 740
Query: 342 GTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQ------NNSLQ 395
+L + + + +S N F S P N L+ ++ N +
Sbjct: 741 TSLSDDFRAT----TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795
Query: 396 GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP---GKQF 452
P+ + P+L L + +N + ++L L +++DN +
Sbjct: 796 RQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIE 852
Query: 453 ATFDNTSFDSNSGLCG 468
A +D + G
Sbjct: 853 AGMYVLLYDKTQDIRG 868
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-41
Identities = 53/424 (12%), Positives = 124/424 (29%), Gaps = 31/424 (7%)
Query: 33 CNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT 92
Q L N ++ L LA +G + + L+ L+ + +V +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV--PDAIGQLTELKVLSFGTHSETVSGRLF 366
Query: 93 S-NTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNA 151
+ + + FL L + DL + I ++ +
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN----PEMKPIKKDSR 422
Query: 152 LNISHNFLTGFDQHLVVLPANKGDLL---TFDLSSNNLQGPLPVPPPGTIHYLASNNSLT 208
+++ + + + L +++ +
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN--IAVDWEDANSDYAKQY 480
Query: 209 GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKER 268
NL L + L + LP L + EL L++ N
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGIS-AAQLKADWT 538
Query: 269 RIPRSLINCSKLEFLGLGNNQISDTFPSW-LGTLPNLNVLILRSNIFYGIIKEPRTDCGF 327
R+ K++ +G N + + S L + L +L N ++
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN----KVRHLEAFGTN 594
Query: 328 SKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV-IPASIANLKGLQV 386
KL + L N I +P + ++ + S+N + + ++ +
Sbjct: 595 VKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLG-----FSHNKLKYIPNIFNAKSVYVMGS 648
Query: 387 LNLQNNSLQGHIPSCLGNLP-----NLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNH 441
++ N + + ++ N ++ LS N+ + + + +S+N
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708
Query: 442 LTGL 445
+T +
Sbjct: 709 MTSI 712
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 4e-40
Identities = 64/461 (13%), Positives = 132/461 (28%), Gaps = 64/461 (13%)
Query: 18 SIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEF 77
+ N + + +A G++ ++ L++L L +S + +L +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL--TPDM 375
Query: 78 LALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYH------LLVLDLSDN 131
+R+ + K Q+L L + + P + + N
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435
Query: 132 RIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLP 191
RI + K + + L + +++ T + + D +
Sbjct: 436 RITF-ISKAI--QRLTKLQIIYFANSPFTYDNIAV--------DWEDANSDYAKQYENEE 484
Query: 192 VPPPG----TIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL---------LPQC 238
+ T L + ++P ++ +L L+SL ++ N L
Sbjct: 485 LSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543
Query: 239 LGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWL 298
++ + + NN P SL KL L +N++ +
Sbjct: 544 EDTGP-KIQIFYMGYNNL-EEFP--------ASASLQKMVKLGLLDCVHNKVR-HLEA-F 591
Query: 299 GTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIV 358
GT L L L N I ++ ++ + S+N + +P +
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPED--FCAFTDQVEGLGFSHN-KLKYIPNIFNAK----SVY 644
Query: 359 NTTGIILSNNSFDSVIP-----ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDL 413
+ S N S + L N +Q + ++ L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704
Query: 414 SNNKFS-------GQIPQQLVELTFLEFFNVSDNHLTGLIP 447
SNN + L ++ N LT L
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD 745
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-28
Identities = 37/256 (14%), Positives = 79/256 (30%), Gaps = 28/256 (10%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
+ G +P I L L+ L ++ + + G+ + + + +
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVS-GRLFGDEELTPDMSEERKHRIRMHYKK 389
Query: 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322
F+ + + L N+ + P + +L + N+ I +
Sbjct: 390 MFL------DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI-GNLTNRITFISK 442
Query: 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLK 382
+KL+II +N+ + S +NLK
Sbjct: 443 AIQRLTKLQIIYFANS-PFTYDNIAVDW----------EDANSDYAKQYENEELSWSNLK 491
Query: 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG---------QIPQQLVELTFLE 433
L + L N +P L +LP L+SL+++ N+ ++ ++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551
Query: 434 FFNVSDNHLTGLIPPG 449
F + N+L
Sbjct: 552 IFYMGYNNLEEFPASA 567
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 10/81 (12%), Positives = 24/81 (29%)
Query: 368 NSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLV 427
+ + + N + L+L +G +P +G L L+ L + +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 428 ELTFLEFFNVSDNHLTGLIPP 448
E + + +
Sbjct: 369 EELTPDMSEERKHRIRMHYKK 389
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 11/62 (17%), Positives = 22/62 (35%)
Query: 387 LNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLI 446
N + + L N + L L+ G++P + +LT L+ + + T
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 447 PP 448
Sbjct: 364 RL 365
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 2e-43
Identities = 86/481 (17%), Positives = 147/481 (30%), Gaps = 58/481 (12%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L L L N GS L SLE + + ++ + + L L L++A N
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT---SNTTSQKLKYIGLRSCNLTKFPNFL 117
KL ++ NL + LS N + +T Q + + + +
Sbjct: 142 S-CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200
Query: 118 QNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ-------HLVVLP 170
L L L N + K L N+ L+ + + L
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259
Query: 171 ANKGDLL----------------------TFDLSSNNLQGPLPVPPPGTIHYLA-SNNSL 207
D L+ +++ VP L+ L
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319
Query: 208 TGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKE 267
+ P+ +L L+SL L+ N S + LS LDL N + ++
Sbjct: 320 K-QFPTL--DLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSY--- 370
Query: 268 RRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGF 327
S + + L L L N + L L L + + + E
Sbjct: 371 -----SDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSL 423
Query: 328 SKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI-ANLKGLQV 386
KL +D+S FL ++ + ++ NSF +++ AN L
Sbjct: 424 EKLLYLDISYT-NTKIDFDGIFLGLTSLNTLK-----MAGNSFKDNTLSNVFANTTNLTF 477
Query: 387 LNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLI 446
L+L L+ L L+ L++S+N +L L + S N +
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537
Query: 447 P 447
Sbjct: 538 G 538
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 1e-38
Identities = 84/466 (18%), Positives = 147/466 (31%), Gaps = 49/466 (10%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+ + L N S N L+ + +++C + + L L L L N +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLT--KFPNFLQ 118
+ +LE L +L+ L ++ LK + + + K P +
Sbjct: 94 SFSPG--SFSGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 119 NQYHLLVLDLSDNRIQGKVPKWL--LDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDL 176
N +L+ +DLS N IQ L L N Q +L++S N + L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK----L 206
Query: 177 LTFDLSSNNLQGPLPVPPPGTIHYLA----SNNSLTGEIPSWICNLNILESLV------- 225
L N + + L E I +I+E L
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 226 -LSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLG 284
L++ N ++ +S + L G + + + K + L
Sbjct: 267 RLTYTNDFSDDIVKFHCLAN-VSAMSLAGVSI------------KYLEDVPKHFKWQSLS 313
Query: 285 LGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTL 344
+ Q+ LP L L L N L +DLS N +
Sbjct: 314 IIRCQLKQFPTL---DLPFLKSLTLTMNK----GSISFKKVALPSLSYLDLSRN-ALSFS 365
Query: 345 PLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIP-SCLG 403
S+ + + + LS N ++ A+ L+ LQ L+ Q+++L+ S
Sbjct: 366 GCCSYSDLGTNSLRH---LDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421
Query: 404 NLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
+L L LD+S + LT L ++ N
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 5e-29
Identities = 67/392 (17%), Positives = 118/392 (30%), Gaps = 53/392 (13%)
Query: 74 NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF-PNFLQNQYHLLVLDLSDNR 132
+ + + LS N L +L + + S+ L+++ L C + +HL L L+ N
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192
IQ P + +L L L + + L +++ N +
Sbjct: 92 IQSFSPGSFS--GLTSLENLVAVETKLASLESFPI---GQLITLKKLNVAHNFIHS---C 143
Query: 193 PPPGTIHYLA-------SNNSLTGEIPSWICNL----NILESLVLSHNNLSGLLPQCLGN 241
P L S N + + + L + SL +S N + + Q
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203
Query: 242 SSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGL------GNNQISDTFP 295
L L L+GN I T ++ N + L L + P
Sbjct: 204 IK--LHELTLRGNFNSSNIMKTCLQ---------NLAGLHVHRLILGEFKDERNLEIFEP 252
Query: 296 SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355
S + L ++ + R + + + + L+ I L
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKH----- 306
Query: 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415
+ + +L L+ L L N I LP+L LDLS
Sbjct: 307 --FKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSR 359
Query: 416 NKFSGQIPQ--QLVELTFLEFFNVSDNHLTGL 445
N S + L ++S N +
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 9e-29
Identities = 67/421 (15%), Positives = 121/421 (28%), Gaps = 51/421 (12%)
Query: 1 LQFLYLRLNNFSGDLL-GSIGNLRSLEAIHIAKCNVSGQI------TSSLRNLSQLFFLD 53
L L LR N S +++ + NL L + + S + L + +
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265
Query: 54 LAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLR------- 106
V N+ ++L+ + L + Q L I +
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL 325
Query: 107 ----------SCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISH 156
+ N L LDLS N + D +L L++S
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385
Query: 157 NFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA----SNNSLTGEIP 212
N + + L L D + L+ ++ L S + +
Sbjct: 386 NGAIIMSANFMGLEE----LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 213 SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPR 272
L L +L ++ N+ + ++ L+ LDL F
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD------- 494
Query: 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRI 332
+L+ L + +N + S L +L+ L N L
Sbjct: 495 ---TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK--GILQHFPKSLAF 549
Query: 333 IDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNN 392
+L+NN + FL W V L N + + A+ + VL+ N+
Sbjct: 550 FNLTNNSVACICEHQKFLQW-----VKEQKQFLVN--VEQMTCATPVEMNTSLVLDFNNS 602
Query: 393 S 393
+
Sbjct: 603 T 603
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 68/372 (18%), Positives = 118/372 (31%), Gaps = 51/372 (13%)
Query: 105 LRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ 164
L+K P+ + + +DLS N ++ + + N L L++S + +
Sbjct: 18 CMDQKLSKVPDDIPS--STKNIDLSFNPLKI-LKSYSF-SNFSELQWLDLSRCEIETIED 73
Query: 165 HLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL-------ASNNSLTGEIPSWICN 217
L L+ N +Q PG+ L A L I
Sbjct: 74 KAW---HGLHHLSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC 277
L L+ L ++HN + ++ L +DL N N R P+ ++
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS- 185
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
L + N I L+ L LR N I + L + L
Sbjct: 186 -----LDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNI-MKTCLQNLAGLHVHRLIL 238
Query: 338 NIFIGTLPLKSFLCWNAMKIVNTTGIIL--SNNSFDSVIPASIANLKGLQVLNLQNNSLQ 395
F L+ F + + T + + S L + ++L S++
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298
Query: 396 GHIPSCLG--------------------NLPNLESLDLSNNKFSGQIPQQLVELTFLEFF 435
++ +LP L+SL L+ NK S I + V L L +
Sbjct: 299 -YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYL 355
Query: 436 NVSDNHLTGLIP 447
++S N L+
Sbjct: 356 DLSRNALSFSGC 367
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 60/286 (20%), Positives = 99/286 (34%), Gaps = 21/286 (7%)
Query: 177 LTFDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLL 235
+T+ L +P P + + S N L N + L+ L LS + +
Sbjct: 14 ITYQCMDQKLSK-VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295
+ LS L L GN P +F + LE L +++
Sbjct: 73 DKAWHGLH-HLSNLILTGNPIQSFSPGSF----------SGLTSLENLVAVETKLASLES 121
Query: 296 SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355
+G L L L + N + K P + L +DLS N +I T+ +
Sbjct: 122 FPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLREN 179
Query: 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS-CLGNLPNLESLDLS 414
VN + + +S N D + + +K L L L+ N +I CL NL L L
Sbjct: 180 PQVNLS-LDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237
Query: 415 NNKFSGQIPQQLVELTFLEFF---NVSDNHLTGLIPPGKQFATFDN 457
+F + ++ E + +E + + LT F
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 1e-19
Identities = 50/246 (20%), Positives = 85/246 (34%), Gaps = 29/246 (11%)
Query: 209 GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKER 268
G + I + + + LS + P + +S +DL N +F
Sbjct: 2 GSLNPCIEVVPNI-TYQCMDQKLSKV-PDDIPSS---TKNIDLSFNPLKILKSYSFS--- 53
Query: 269 RIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFS 328
N S+L++L L +I L +L+ LIL N P + G +
Sbjct: 54 -------NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS--PGSFSGLT 104
Query: 329 KLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV-IPASIANLKGLQVL 387
L + + +L +K +N +++N S +PA +NL L +
Sbjct: 105 SLENLVAVET-KLASLESFPIGQLITLKKLN-----VAHNFIHSCKLPAYFSNLTNLVHV 158
Query: 388 NLQNNSLQGHIPSCLGNLPNL----ESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443
+L N +Q + L L SLD+S N I Q + L + N +
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNS 217
Query: 444 GLIPPG 449
I
Sbjct: 218 SNIMKT 223
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-37
Identities = 81/471 (17%), Positives = 144/471 (30%), Gaps = 37/471 (7%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
LQ L L G+ +L L + + + + LS L L + +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-----N 115
+ + K L+ L ++ N + + L+++ L S +
Sbjct: 114 SLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 116 FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGD 175
Q L LDLS N + + L+ L + +NF + + +
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKE--IRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228
Query: 176 LLTFDLSSNNLQGPLPVPPPGTIH----------YLASNNSLTGEIPSWICNLNILESLV 225
+ L +G L + LA + +I L + S
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 226 LSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKER------RIPRSLINCSK 279
L + + L +++ + F + + S ++
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348
Query: 280 LEFLGLGNNQIS--DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
LEFL L N +S +L L L N G+I G +L +D +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQH 405
Query: 338 NIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGH 397
+ FL + N + +S+ L L+VL + NS Q +
Sbjct: 406 SNLKQMSEFSVFL-----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 398 IPS-CLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L NL LDLS + P L+ L+ N++ N L +
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 8e-31
Identities = 83/467 (17%), Positives = 149/467 (31%), Gaps = 61/467 (13%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L L L N LG+ L SL+ + + N++ + +L L L++A N +
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQ---KLKYIGLRSCNLTKFPNFL 117
+ KL ++ NLE L LS N++ + Q + L +
Sbjct: 138 -SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 118 QNQYHLLVLDLSDNRIQGKVPKWLLD-----------------------------PNMQN 148
+ L L L +N V K + + N
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 149 LNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLT 208
L +L + ++ L ++ +F L S ++ +L N
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 209 GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGN--NFFGTIPNTFI- 265
G+ P+ L L+ L + N L LDL N +F G +
Sbjct: 317 GQFPTL--KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 266 ------------KERRIPRSLINCSKLEFLGLGNNQISDTFP-SWLGTLPNLNVLILRSN 312
+ + + +LE L ++ + S +L NL L +
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 313 IFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS 372
G S L ++ ++ N F F + ++ LS +
Sbjct: 432 HTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD-----LSQCQLEQ 484
Query: 373 VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419
+ P + +L LQVLN+ +N L+ L +L+ + L N +
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 4e-21
Identities = 64/350 (18%), Positives = 108/350 (30%), Gaps = 48/350 (13%)
Query: 4 LYLRLNNFSGDLLGSIGNLRSL--EAIHIAKCNVSG-QITSSLRNLSQLFFLDLAKNSYR 60
+ N ++ L +L E +A + I L+ + L +
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
+K W++LE + + L + LK + S + +
Sbjct: 296 -RVKDFSYNFGWQHLELVNCKFGQFPTLKL-------KSLKRLTFTSNKGGNAFSEVDLP 347
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
L LDLS N + K D +L L++S N + + + L L D
Sbjct: 348 -SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ----LEHLD 402
Query: 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240
+NL+ + +L L L +SH +
Sbjct: 403 FQHSNLKQ---MSEFSVFL-----------------SLRNLIYLDISHTHTRVAFNGIFN 442
Query: 241 NSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT 300
S L VL + GN+F P L FL L Q+ P+ +
Sbjct: 443 GLSS-LEVLKMAGNSFQENFL---------PDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 301 LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFL 350
L +L VL + SN + + L+ I L N + + P +L
Sbjct: 493 LSSLQVLNMASNQLKSV--PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 3e-19
Identities = 57/274 (20%), Positives = 97/274 (35%), Gaps = 21/274 (7%)
Query: 177 LTFDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLL 235
+T+ N +P P + L S N L + L+ L LS + +
Sbjct: 10 ITYQCMELNFYK-IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295
+ S LS L L GN F S L+ L ++
Sbjct: 69 DGAYQSLS-HLSTLILTGNPIQSLALGAF----------SGLSSLQKLVAVETNLASLEN 117
Query: 296 SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355
+G L L L + N+ K P + L +DLS+N I ++ + M
Sbjct: 118 FPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM 175
Query: 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS-CLGNLPNLESLDLS 414
++N + + LS N + + P + ++ L L L+NN ++ C+ L LE L
Sbjct: 176 PLLNLS-LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233
Query: 415 NNKFSGQIPQQLVE---LTFLEFFNVSDNHLTGL 445
+F + + + L L + + L L
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 3e-18
Identities = 62/353 (17%), Positives = 110/353 (31%), Gaps = 34/353 (9%)
Query: 105 LRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ 164
N K P+ L LDLS N ++ + + + L L++S + +
Sbjct: 14 CMELNFYKIPDNLPF--STKNLDLSFNPLR-HLGSYSFF-SFPELQVLDLSRCEIQTIED 69
Query: 165 HLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTGEIPSWICN 217
+ L T L+ N +Q G L+ +L I +
Sbjct: 70 GAY---QSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC 277
L L+ L ++HN + ++ L LDL N ++P ++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS- 181
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
L L N ++ L+ L LR+N + G + L + L
Sbjct: 182 -----LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVL 234
Query: 338 NIFIGTLPLKSFLCWNAMKIVNTTGIIL---SNNSFDSVIPASIANLKGLQVLNLQNNSL 394
F L+ F + N T + + I L + +L + ++
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 395 QGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
+ + N + L+L N KF +L L L F + N
Sbjct: 295 E-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTF---TSNKGGNAFS 342
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 44/229 (19%), Positives = 77/229 (33%), Gaps = 28/229 (12%)
Query: 226 LSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGL 285
N + P L S LDL N + S + +L+ L L
Sbjct: 14 CMELNFYKI-PDNLPFS---TKNLDLSFNPL-RHLG---------SYSFFSFPELQVLDL 59
Query: 286 GNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP 345
+I +L +L+ LIL N + G S L+ + + +L
Sbjct: 60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKLVAVET-NLASLE 116
Query: 346 LKSFLCWNAMKIVNTTGIILSNNSFDSV-IPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404
+ + +++N S +P +NL L+ L+L +N +Q + L
Sbjct: 117 NFPI-----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 405 LPNLE----SLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
L + SLDLS N + I + L + +N + +
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-33
Identities = 90/514 (17%), Positives = 162/514 (31%), Gaps = 74/514 (14%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQI--TSSLRNLSQLFFLDLAKNS 58
L+ L L + + L L + + C +S + RNL L LDL+KN
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 59 YRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT-SNTTSQKLKYIGLRSCNLTKFPNFL 117
R ++ L +L+ + S N++ ++ + + L + L + +L +
Sbjct: 135 IR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193
Query: 118 QNQY-------HLLVLDLSDNRIQGKVPKWLLD----------PNMQNLNALNISHNFLT 160
+ L +LD+S N + + ++ + +
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253
Query: 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTGEIPS 213
DQ+ + + DLS + L + N +
Sbjct: 254 DPDQN-TFAGLARSSVRHLDLSHGFVF----SLNSRVFETLKDLKVLNLAYNKINKIADE 308
Query: 214 WICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRS 273
L+ L+ L LS+N L L +++ +DLQ N+ TF
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFK-------- 359
Query: 274 LINCSKLEFLGLGNNQISD-TFPSWLGTL--------------PNLNVLILRSNIFYGII 318
KL+ L L +N ++ F + + N++ L N +
Sbjct: 360 --FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL- 416
Query: 319 KEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI 378
L+I+ L+ N + N + + L N +
Sbjct: 417 DILYFLLRVPHLQILILNQN-RFSSCSGDQTPSEN----PSLEQLFLGENMLQLAWETEL 471
Query: 379 -----ANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433
L LQVL L +N L P +L L L L++N+ + L LE
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLE 529
Query: 434 FFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLC 467
++S N L P F + N +C
Sbjct: 530 ILDISRNQLLAPNP--DVFVSLSVLDITHNKFIC 561
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-32
Identities = 87/493 (17%), Positives = 146/493 (29%), Gaps = 72/493 (14%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQI-TSSLRNLSQLFFLDLAKNSY 59
+ L L N S L L+ + + I + RNL L LDL +
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-- 83
Query: 60 RGTIKLDVLLTSW----KNLEFLALSLNRLSVLT-KATSNTTSQKLKYIGLRSCNLT--K 112
K+ L +L L L LS K + L + L +
Sbjct: 84 ----KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139
Query: 113 FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPAN 172
L +D S N+I L + L+ +++ N L N
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199
Query: 173 K---GDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHN 229
L D+S N + +N+++ + + + +
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITG---------NFSNAISKSQAFSLILAHHIMGAGFGFH 250
Query: 230 NLSGLLPQCLGN-SSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN 288
N+ + + LDL F F L+ L L N
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF----------ETLKDLKVLNLAYN 300
Query: 289 QISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKS 348
+I+ L NL VL L N+ + G K+ IDL N I + ++
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGEL--YSSNFYGLPKVAYIDLQKN-HIAIIQDQT 357
Query: 349 FLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQG------------ 396
F ++ ++ L +N+ +I + + + L N L
Sbjct: 358 FKFLEKLQTLD-----LRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407
Query: 397 ---------HIPSCLGNLPNLESLDLSNNKFSGQIPQQLVE-LTFLEFFNVSDNHLTGLI 446
I L +P+L+ L L+ N+FS Q LE + +N L
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467
Query: 447 PPGKQFATFDNTS 459
+ F+ S
Sbjct: 468 ETELCWDVFEGLS 480
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 3e-30
Identities = 70/365 (19%), Positives = 122/365 (33%), Gaps = 30/365 (8%)
Query: 99 KLKYIGLRSCNLTKFPNF-LQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHN 157
+ + L + L +L+L + K N+ NL L++ +
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR-NLPNLRILDLGSS 83
Query: 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTG- 209
+ L L L V G L S N +
Sbjct: 84 KIYFLHPDAF---QGLFHLFELRLYFCGLSDA--VLKDGYFRNLKALTRLDLSKNQIRSL 138
Query: 210 EIPSWICNLNILESLVLSHNNLSGLLPQCLGN-SSDELSVLDLQGNNFFGTIPNTFIKER 268
+ LN L+S+ S N + + L LS L N+ + + + K
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 269 RIPRSLI--------NCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320
R+++ N ++ G +N IS + L ++ + +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIAN 380
S +R +DLS+ F+ +L + F +K++N L+ N + + +
Sbjct: 259 TFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLN-----LAYNKINKIADEAFYG 312
Query: 381 LKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440
L LQVLNL N L S LP + +DL N + Q L L+ ++ DN
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372
Query: 441 HLTGL 445
LT +
Sbjct: 373 ALTTI 377
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 71/358 (19%), Positives = 115/358 (32%), Gaps = 52/358 (14%)
Query: 105 LRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ 164
R CNLT+ P L L LS N I+ V P ++ L L + +
Sbjct: 11 YRFCNLTQVPQVLNT---TERLLLSFNYIR-TVTASSF-PFLEQLQLLELGSQYTPLTID 65
Query: 165 HLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESL 224
N +L DL S+ + +H P L L L
Sbjct: 66 KEAF--RNLPNLRILDLGSSKIY---------FLH------------PDAFQGLFHLFEL 102
Query: 225 VLSHNNLSGL-LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFL 283
L LS L + L+ LDL N I+ + S + L+ +
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ---------IRSLYLHPSFGKLNSLKSI 153
Query: 284 GLGNNQISDTFPSWLGTL--PNLNVLILRSNIFYGIIKEPRTDCG----FSKLRIIDLSN 337
+NQI L L L+ L +N Y + C L I+D+S
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213
Query: 338 NIFIGTLPLKSFLCWNAMKIV------NTTGIILSNNSFDSVIPASIANLK--GLQVLNL 389
N + + + + + G ++ + A L ++ L+L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273
Query: 390 QNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
+ + L +L+ L+L+ NK + + L L+ N+S N L L
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 51/267 (19%), Positives = 81/267 (30%), Gaps = 38/267 (14%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS-- 58
LQ L L N + L + I + K +++ + + L +L LDL N+
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 59 -----------YRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRS 107
+ KL L + LS NRL L L+ + L
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435
Query: 108 CNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVPKWLLDP---NMQNLNALNISHNFLTGF 162
+ L L L +N +Q L + +L L ++HN+L
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 163 DQ-----------------HLVVLPAN--KGDLLTFDLSSNNLQGPLPVPPPGTIHYLAS 203
L VL N +L D+S N L P P +
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555
Query: 204 NNSLTGEIP-SWICNLNILESLVLSHN 229
+N E S N ++ ++
Sbjct: 556 HNKFICECELSTFINWLNHTNVTIAGP 582
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHI-PSCLGNLPNLESLDLSNNK 417
T ++LS N +V +S L+ LQ+L L + I NLPNL LDL ++K
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 418 FSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFA 453
P L L + L+ + F
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 385 QVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTG 444
++ + +L +P L E L LS N L L+ + +
Sbjct: 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62
Query: 445 LIPPG 449
I
Sbjct: 63 TIDKE 67
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-31
Identities = 73/469 (15%), Positives = 159/469 (33%), Gaps = 54/469 (11%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
++ L L N + G + +L+ + + ++ + +L L LDL+ N
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN--- 84
Query: 61 GTIKLDVLLTSW----KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF--P 114
L L +SW +L++L L N L + L+ + + +
Sbjct: 85 ---HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Query: 115 NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGF------------ 162
L L++ ++ + L ++++++ L + +
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSL--KSIRDIHHLTLHLSESAFLLEIFADILSSVR 199
Query: 163 -----DQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICN 217
D +L + + L V + + L E+ +
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC 277
L L + + S ++ + + + L + F + +
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY----------SLL 309
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCG-FSKLRIIDLS 336
K++ + + N+++ S+ L +L L L N+ + G + L+ + LS
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369
Query: 337 NNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQG 396
N + ++ + + T + +S N+F +P S + ++ LNL + ++
Sbjct: 370 QN-HLRSMQKTGEILLTLKNL---TSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR- 423
Query: 397 HIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
+ +C+ LE LD+SNN L L L +S N L L
Sbjct: 424 VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLKTL 466
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 62/398 (15%), Positives = 126/398 (31%), Gaps = 50/398 (12%)
Query: 74 NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNR 132
++ L LS N+++ + + L+ + L+S + + + L LDLSDN
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACAN-LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192
+ + + +L LN+ N + N +L T + +
Sbjct: 86 LS-SLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLF--PNLTNLQTLRIGNVET---FSE 138
Query: 193 PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQ 252
L S L L + +L Q L + ++ L L
Sbjct: 139 IRRIDFAGLTS-----------------LNELEIKALSLRNYQSQSLKSIR-DIHHLTLH 180
Query: 253 GNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVL----- 307
+ + S + +L L + ++ S L + +
Sbjct: 181 LSESAFLLEIFAD----------ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
Query: 308 ---ILRSNIFYGIIKEPRTDCGFSKLRIIDLSNN--IFIGTLPLKSFLCWNAMKIVNTTG 362
+L F ++K R S++ D + N ++ V
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290
Query: 363 IILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQI 422
+ + + + L+ ++ + ++N+ + S +L +LE LDLS N +
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Query: 423 PQQLVE---LTFLEFFNVSDNHLTGLIPPGKQFATFDN 457
+ L+ +S NHL + G+ T N
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 2e-20
Identities = 78/430 (18%), Positives = 142/430 (33%), Gaps = 54/430 (12%)
Query: 1 LQFLYLRLNNFSG-DLLGSIGNLRSLEAIHIAKCNVSGQIT-SSLRNLSQLFFLDLAKNS 58
L++L L N + + NL +L+ + I +I L+ L L++ S
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159
Query: 59 YRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP---- 114
R + L S +++ L L L+ + L + ++ S ++Y+ LR NL +F
Sbjct: 160 LR-NYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSS-VRYLELRDTNLARFQFSPL 216
Query: 115 NFLQNQYHLLVLDLSDNRIQGKVPKWLLD-----PNMQNLNALNISHNFLTGFDQHLVVL 169
+ + L + + + LL + + + + N L F+ +
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276
Query: 170 PANKGDLLTFDLSSNNLQG-PLPVPPPGTIHYLA-------SNNSLTGEIPSWIC-NLNI 220
+ G + T + ++ L L N+ + +P +L
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS 335
Query: 221 LESLVLSHNNLSGLL---PQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC 277
LE L LS N + C G L L L N+ ++ L+
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPS-LQTLVLSQNHL--------RSMQKTGEILLTL 386
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
L L + N P + L L S + C L ++D+SN
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-----KTCIPQTLEVLDVSN 440
Query: 338 N----IFIGTLPLKS-FLCWNAMKIVNTTG-------IILSNNSFDSVIPASIANLKGLQ 385
N + L+ ++ N +K + + +S N SV L LQ
Sbjct: 441 NNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500
Query: 386 VLNLQNNSLQ 395
+ L N
Sbjct: 501 KIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 4e-19
Identities = 60/375 (16%), Positives = 119/375 (31%), Gaps = 50/375 (13%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKN--- 57
+ L L L+ + L L S+ + + N++ S L +
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 58 -----SYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQ-------KLKYIGL 105
S+ +KL + +EF +LN L + S+ S+ ++ + +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293
Query: 106 RSCNLTK-FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ 164
L + + + ++++ VP ++++L L++S N +
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEEYL 351
Query: 165 HLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTGEIPSWICN 217
L T LS N+L+ + + L S N+ +P
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRS-MQ-KTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC 277
+ L LS + + L VLD+ NN L
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIPQT----LEVLDVSNNNL-----------DSFSLFL--- 450
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
+L+ L + N++ + L P L V+ + N + + L+ I L
Sbjct: 451 PRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSV--PDGIFDRLTSLQKIWLHT 506
Query: 338 NIFIGTLPLKSFLCW 352
N + + P +L
Sbjct: 507 NPWDCSCPRIDYLSR 521
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 43/290 (14%), Positives = 87/290 (30%), Gaps = 19/290 (6%)
Query: 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237
D S + S N +T + L+ L+L + ++ +
Sbjct: 9 VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68
Query: 238 CLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD-TFPS 296
+ L LDL N+ ++ S L++L L N S
Sbjct: 69 AFYSLG-SLEHLDLSDNHL-SSLS---------SSWFGPLSSLKYLNLMGNPYQTLGVTS 117
Query: 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMK 356
L NL L + + + I+ G + L +++ + +S
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKAL-SLRNYQSQSL-----KS 170
Query: 357 IVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416
I + + L + ++ L ++ L L++ +L S L +
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
Query: 417 KFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGL 466
+ S + EL L + + + + F+ + D S L
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-31
Identities = 59/418 (14%), Positives = 111/418 (26%), Gaps = 94/418 (22%)
Query: 13 GDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSW 72
G + E ++ L + + D + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH------SAWRQANS 55
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNR 132
N + + L + T + LRS L +FP+ HL + +
Sbjct: 56 NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG 115
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192
+ ++P + L L ++ N L
Sbjct: 116 LM-ELPDTMQ--QFAGLETLTLARNPLR-------------------------------- 140
Query: 193 PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQ 252
+P+ I +LN L L + LP+ L ++
Sbjct: 141 -----------------ALPASIASLNRLRELSIRACPELTELPEPLASTD--------- 174
Query: 253 GNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSN 312
L+ L L I + P+ + L NL L +R++
Sbjct: 175 -----------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216
Query: 313 IFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS 372
+ KL +DL + P F +K + L + S
Sbjct: 217 ---PLSALGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLI-----LKDCSNLL 267
Query: 373 VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT 430
+P I L L+ L+L+ +PS + LP + + + + + V
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 6e-24
Identities = 46/274 (16%), Positives = 85/274 (31%), Gaps = 22/274 (8%)
Query: 176 LLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLL 235
+ P + ++ + N N + + L
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALKATA 72
Query: 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295
+ L+L+ + P S L+ + + + P
Sbjct: 73 DLLEDATQPGRVALELRSVPL-----------PQFPDQAFRLSHLQHMTIDAAGLM-ELP 120
Query: 296 SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP---LKSFLCW 352
+ L L L N + P + ++LR + + + LP +
Sbjct: 121 DTMQQFAGLETLTLARNPLRAL---PASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 353 NAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLD 412
+VN + L S +PASIANL+ L+ L ++N+ L + + +LP LE LD
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235
Query: 413 LSNNKFSGQIPQQLVELTFLEFFNVSD-NHLTGL 445
L P L+ + D ++L L
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 25/180 (13%)
Query: 1 LQFLYLRLNN---------FSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFF 51
L+ L +R S D G L +L+++ + + + +S+ NL L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210
Query: 52 LDLAKNSYRGTIKLDVL---LTSWKNLEFLALS-LNRLSVLTKATSNTTSQKLKYIGLRS 107
L + + L L + LE L L L LK + L+
Sbjct: 211 LKIRNS------PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP--LKRLILKD 262
Query: 108 CN-LTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHL 166
C+ L P + L LDL ++P + + + + + DQH
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI--AQLPANCIILVPPHLQAQLDQHR 320
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 5e-30
Identities = 94/407 (23%), Positives = 150/407 (36%), Gaps = 54/407 (13%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100
+ L++ L K + T+ L + L + + L
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVSQTDL----DQVTTLQADRLGIKSIDGVEYLN---NL 70
Query: 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160
I + LT L+N L+ + +++N+I P N+ NL L + +N +T
Sbjct: 71 TQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQIT 125
Query: 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNI 220
D L L L +LSSN + + ++ L+ N +T P + NL
Sbjct: 126 DID-PLKNLTN----LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTT 178
Query: 221 LESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKL 280
LE L +S N +S + L + L L N P L + L
Sbjct: 179 LERLDISSNKVSDISV--LAKLT-NLESLIATNNQISDITP------------LGILTNL 223
Query: 281 EFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIF 340
+ L L NQ+ D L +L NL L L +N + G +KL + L N
Sbjct: 224 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQI 277
Query: 341 IGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS 400
PL + T + L+ N + + P I+NLK L L L N++ P
Sbjct: 278 SNISPLA--------GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP- 326
Query: 401 CLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
+ +L L+ L NNK S L LT + + + N ++ L P
Sbjct: 327 -VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-28
Identities = 92/449 (20%), Positives = 153/449 (34%), Gaps = 61/449 (13%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L N + S +L + + + + + L+ L ++ + N
Sbjct: 26 KMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLT 81
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
L L L + ++ N+++ +T + T L + L + +T L+N
Sbjct: 82 DITPLKNL----TKLVDILMNNNQIADITPLANLT---NLTGLTLFNNQITDIDP-LKNL 133
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
+L L+LS N I + +L L+ + AN L D
Sbjct: 134 TNLNRLELSSNTISDISAL----SGLTSLQQLSFGNQVTDLKPL------ANLTTLERLD 183
Query: 181 LSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
+SSN + + + L A+NN ++ P + L L+ L L+ N L + L
Sbjct: 184 ISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--L 239
Query: 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299
+ + L+ LDL N P L +KL L LG NQIS+ P L
Sbjct: 240 ASLT-NLTDLDLANNQISNLAP------------LSGLTKLTELKLGANQISNISP--LA 284
Query: 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVN 359
L L L L N I L + L N P+ +
Sbjct: 285 GLTALTNLELNENQLEDIS----PISNLKNLTYLTLYFNNISDISPVS--------SLTK 332
Query: 360 TTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419
+ NN V +ANL + L+ +N + P L NL + L L++ ++
Sbjct: 333 LQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388
Query: 420 GQIPQQLVELTFLEFFNVSDNHLTGLIPP 448
++ N N LI P
Sbjct: 389 NAPVNYKANVSIP---NTVKNVTGALIAP 414
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 6e-26
Identities = 84/427 (19%), Positives = 157/427 (36%), Gaps = 55/427 (12%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L + + N + + + NL +L + + ++ L+NL+ L L+L+ N+
Sbjct: 92 LVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS 147
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
L L +L+ L+ +T L+ + + S ++ L
Sbjct: 148 DISALSGL----TSLQQLSFGNQ----VTDLKPLANLTTLERLDISSNKVSDISV-LAKL 198
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
+L L ++N+I P + NL+ L+++ N L L L L D
Sbjct: 199 TNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDIG-TLASLTN----LTDLD 249
Query: 181 LSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
L++N + P+ + L N ++ P + L L +L L+ N L + P +
Sbjct: 250 LANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I 305
Query: 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299
N L+ L L NN P + + +KL+ L NN++SD S L
Sbjct: 306 SNLK-NLTYLTLYFNNISDISP------------VSSLTKLQRLFFYNNKVSD--VSSLA 350
Query: 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVN 359
L N+N L N I + +++ + L++ P+ + I N
Sbjct: 351 NLTNINWLSAGHNQ----ISDLTPLANLTRITQLGLNDQA-WTNAPVNYK---ANVSIPN 402
Query: 360 TTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419
T + N + + PA+I++ ++ N ++ FS
Sbjct: 403 T----VKNVTGALIAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFS 457
Query: 420 GQIPQQL 426
G + Q L
Sbjct: 458 GTVTQPL 464
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 9e-21
Identities = 73/321 (22%), Positives = 119/321 (37%), Gaps = 48/321 (14%)
Query: 128 LSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQ 187
D I + D + + +T V + + T ++
Sbjct: 9 TQDTPIN----QIFTDTALAEKMKTVLGKTNVTD-----TVSQTDLDQVTTLQADRLGIK 59
Query: 188 GPLPVPPPGTIHYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDEL 246
V + + SNN LT P + NL L +++++N ++ + P L N + L
Sbjct: 60 SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT-NL 114
Query: 247 SVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNV 306
+ L L N P L N + L L L +N ISD S L L +L
Sbjct: 115 TGLTLFNNQITDIDP------------LKNLTNLNRLELSSNTISD--ISALSGLTSLQQ 160
Query: 307 LILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILS 366
L + + + + + L +D+S+N L K+ N +I +
Sbjct: 161 LSFGNQ-----VTDLKPLANLTTLERLDISSNKVSDISVLA--------KLTNLESLIAT 207
Query: 367 NNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQL 426
NN + P + L L L+L N L+ L +L NL LDL+NN+ S P L
Sbjct: 208 NNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--L 261
Query: 427 VELTFLEFFNVSDNHLTGLIP 447
LT L + N ++ + P
Sbjct: 262 SGLTKLTELKLGANQISNISP 282
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 5e-16
Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 38/247 (15%)
Query: 201 LASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260
+ + + L VL N++ + Q D+++ L
Sbjct: 8 ITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGI---- 58
Query: 261 PNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320
+ + + L + NNQ++D P L L L +++ +N I +
Sbjct: 59 --------KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ----IAD 104
Query: 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIAN 380
+ L + L NN PLK+ N + LS+N+ + ++
Sbjct: 105 ITPLANLTNLTGLTLFNNQITDIDPLKNL--------TNLNRLELSSNTISDISA--LSG 154
Query: 381 LKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440
L LQ L+ N L NL LE LD+S+NK S L +LT LE ++N
Sbjct: 155 LTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 209
Query: 441 HLTGLIP 447
++ + P
Sbjct: 210 QISDITP 216
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 8e-29
Identities = 70/403 (17%), Positives = 140/403 (34%), Gaps = 72/403 (17%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100
+L++ L K S + + L +++ L ++ +++ + T L
Sbjct: 16 FPDADLAEGIRAVLQKASVTDVVTQEEL----ESITKLVVAGEKVASIQGIEYLT---NL 68
Query: 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160
+Y+ L +T L L + N+I L N+ NL L ++ + ++
Sbjct: 69 EYLNLNGNQITDISPLSNLV-KLTNLYIGTNKI--TDISAL--QNLTNLRELYLNEDNIS 123
Query: 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNI 220
L L + + +L +N+ S + N+
Sbjct: 124 DIS-PLANLTK----MYSLNLGANHNLS----------------------DLSPLSNMTG 156
Query: 221 LESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKL 280
L L ++ + + + P + N + +L L L N P L + + L
Sbjct: 157 LNYLTVTESKVKDVTP--IANLT-DLYSLSLNYNQIEDISP------------LASLTSL 201
Query: 281 EFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIF 340
+ NQI+D + + + LN L + +N + S+L +++ N
Sbjct: 202 HYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLS----PLANLSQLTWLEIGTN-Q 254
Query: 341 IGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS 400
I + L + + +N + + NL L L L NN L
Sbjct: 255 ISDINAVKDL-------TKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDME 305
Query: 401 CLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443
+G L NL +L LS N + P L L+ ++ + ++ +
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 6e-25
Identities = 75/422 (17%), Positives = 147/422 (34%), Gaps = 102/422 (24%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L+ + + + + L S+ + +A V +S++ + L
Sbjct: 24 GIRAVLQKASVTD--VVTQEELESITKLVVAGEKV-----ASIQGIEYL----------- 65
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
NLE+L L+ N+++ ++ ++ KL + + + +T
Sbjct: 66 ------------TNLEYLNLNGNQITDISPLSNLV---KLTNLYIGTNKITDISALQNLT 110
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDP--NMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178
+L L L+++ I + P N+ + +LN+ N L + L
Sbjct: 111 -NLRELYLNEDNISD------ISPLANLTKMYSLNLGANHNLSDLSPLSNMTG----LNY 159
Query: 179 FDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237
++ + ++ P+ ++ L + N + P + +L L N ++ + P
Sbjct: 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP- 216
Query: 238 CLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSW 297
+ N + L+ L + N P L N S+L +L +G NQISD +
Sbjct: 217 -VANMT-RLNSLKIGNNKITDLSP------------LANLSQLTWLEIGTNQISD--INA 260
Query: 298 LGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357
+ L L +L + SN +I D+S + L
Sbjct: 261 VKDLTKLKMLNVGSN------------------QISDISV---LNNLS------------ 287
Query: 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417
+ L+NN + I L L L L N + P L +L ++S D +N
Sbjct: 288 -QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344
Query: 418 FS 419
Sbjct: 345 IK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 3e-20
Identities = 53/271 (19%), Positives = 99/271 (36%), Gaps = 37/271 (13%)
Query: 176 LLTFDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234
+ L ++ + +I L + + I I L LE L L+ N ++ +
Sbjct: 24 GIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDI 81
Query: 235 LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294
P L N +L+ L + N +L N + L L L + ISD
Sbjct: 82 SP--LSNLV-KLTNLYIGTNKI------------TDISALQNLTNLRELYLNEDNISDIS 126
Query: 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA 354
P L L + L L +N + + + L + ++ + P+ +
Sbjct: 127 P--LANLTKMYSLNLGAN---HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANL----- 176
Query: 355 MKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLS 414
+ + L+ N + + P +A+L L N + P + N+ L SL +
Sbjct: 177 ---TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229
Query: 415 NNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
NNK + P L L+ L + + N ++ +
Sbjct: 230 NNKITDLSP--LANLSQLTWLEIGTNQISDI 258
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 3e-19
Identities = 57/246 (23%), Positives = 94/246 (38%), Gaps = 38/246 (15%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP-QCLGNSSDELSVLDLQGNNFFGTIP 261
S+T + L + LV++ ++ + + L N L L+L GN P
Sbjct: 30 QKASVTDVVT--QEELESITKLVVAGEKVASIQGIEYLTN----LEYLNLNGNQITDISP 83
Query: 262 NTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP 321
L N KL L +G N+I+D S L L NL L L + I +
Sbjct: 84 ------------LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDN----ISDI 125
Query: 322 RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANL 381
+K+ ++L N + L S + + ++ + V P IANL
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSPLSNM-------TGLNYLTVTESKVKDVTP--IANL 176
Query: 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNH 441
L L+L N ++ P L +L +L N+ + P + +T L + +N
Sbjct: 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232
Query: 442 LTGLIP 447
+T L P
Sbjct: 233 ITDLSP 238
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 318 IKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPAS 377
I + D ++ L + + + T ++++ S+
Sbjct: 12 INQIFPDADLAEGIRAVLQKASVTDVVTQEEL--------ESITKLVVAGEKVASIQG-- 61
Query: 378 IANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437
I L L+ LNL N + P L NL L +L + NK + L LT L +
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 117
Query: 438 SDNHLTGLIP 447
++++++ + P
Sbjct: 118 NEDNISDISP 127
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 77/373 (20%), Positives = 132/373 (35%), Gaps = 65/373 (17%)
Query: 64 KLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHL 123
+ D + ++W+ S R +V+ K + + + + LT P+ L H+
Sbjct: 7 EYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNG-NAVLNVGESGLTTLPDCLPA--HI 63
Query: 124 LVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSS 183
L + DN + L L L +S N LT L +L F
Sbjct: 64 TTLVIPDNNLTS------LPALPPELRTLEVSGNQLTSLPVLPPGLL----ELSIFSNPL 113
Query: 184 NNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSS 243
+L P P G N LT +P L + L +S N L+ L P
Sbjct: 114 THL----PALPSGLCKLWIFGNQLT-SLPVLPPGL---QELSVSDNQLASL-PALPSE-- 162
Query: 244 DELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPN 303
L L N +P S L+ L + +NQ++ + P+ L
Sbjct: 163 --LCKLWAYNNQL-----------TSLPMLP---SGLQELSVSDNQLA-SLPTLPSELYK 205
Query: 304 LNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGI 363
L +N + P S L+ + +S N + +LP + +
Sbjct: 206 LWAY---NNRLTSLPALP------SGLKELIVSGN-RLTSLP---------VLPSELKEL 246
Query: 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIP 423
++S N S +P + L L++ N L +P L +L + +++L N S +
Sbjct: 247 MVSGNRLTS-LPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301
Query: 424 QQLVELTFLEFFN 436
Q L E+T ++
Sbjct: 302 QALREITSAPGYS 314
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-24
Identities = 71/364 (19%), Positives = 121/364 (33%), Gaps = 65/364 (17%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNR 132
L + + L+ L + + + + NLT P L L++S N+
Sbjct: 40 NGNAVLNVGESGLTTL----PDCLPAHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQ 92
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192
+ +P P + L+ + HL LP+ L + N L LPV
Sbjct: 93 LT-SLPVLP--PGLLELSIFSNPLT-------HLPALPSG---LCKLWIFGNQLTS-LPV 138
Query: 193 PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQ 252
PPG S+N L +P+ L L +N L+ L P L L +
Sbjct: 139 LPPGLQELSVSDNQLA-SLPALPSEL---CKLWAYNNQLTSL-PMLPSG----LQELSVS 189
Query: 253 GNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSN 312
N ++P S+L L NN+++ + P+ L LI+ N
Sbjct: 190 DNQL-ASLPTLP-------------SELYKLWAYNNRLT-SLPALPS---GLKELIVSGN 231
Query: 313 IFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS 372
+ P S+L+ + +S N + +LP M + + N +
Sbjct: 232 RLTSLPVLP------SELKELMVSGN-RLTSLP---------MLPSGLLSLSVYRNQL-T 274
Query: 373 VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFL 432
+P S+ +L +NL+ N L L + + +F E L
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334
Query: 433 EFFN 436
Sbjct: 335 HLAA 338
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 3e-21
Identities = 70/402 (17%), Positives = 110/402 (27%), Gaps = 97/402 (24%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSG-QITS---SLRNLSQLFFLDLAK 56
+ L + NN + L LR+L VSG Q+TS L +L
Sbjct: 63 ITTLVIPDNNLT-SLPALPPELRTL--------EVSGNQLTSLPVLPPGLLELSIFSNPL 113
Query: 57 NSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNF 116
L L + L L + N+L+ L L+ + + L P
Sbjct: 114 TH------LPALPS---GLCKLWIFGNQLTSLPVLPPG-----LQELSVSDNQLASLPAL 159
Query: 117 LQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDL 176
L L +N++ L L L++S N L LP +L
Sbjct: 160 PSE---LCKLWAYNNQLTS------LPMLPSGLQELSVSDNQLA-------SLPTLPSEL 203
Query: 177 LTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236
+N L +P+ L+ L++S N L+ LP
Sbjct: 204 YKLWAYNNRLT----------------------SLPALPSG---LKELIVSGNRLTS-LP 237
Query: 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS 296
L L + GN +P S L L + NQ++ P
Sbjct: 238 VLPSE----LKELMVSGNRL-----------TSLPMLP---SGLLSLSVYRNQLT-RLPE 278
Query: 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMK 356
L L + + L N RT ++ + I +
Sbjct: 279 SLIHLSSETTVNLEGNPL-----SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333
Query: 357 IVNTTGIILSNNSFDSVIPA----SIANLKGLQVLNLQNNSL 394
+ L PA +L + L
Sbjct: 334 LHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 48/243 (19%), Positives = 79/243 (32%), Gaps = 54/243 (22%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
+ LT +P + + +LV+ NNL+ L P L L++ GN
Sbjct: 48 GESGLT-TLPDCL--PAHITTLVIPDNNLTSL-PALPPE----LRTLEVSGNQL------ 93
Query: 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322
+P +L + L L + N + P
Sbjct: 94 -----TSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVLP- 140
Query: 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLK 382
L+ + +S+N + +LP + NN S +P + L
Sbjct: 141 -----PGLQELSVSDN-QLASLP---------ALPSELCKLWAYNNQLTS-LPMLPSGL- 183
Query: 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442
Q L++ +N L +P+ L L NN+ + +P L L VS N L
Sbjct: 184 --QELSVSDNQLA-SLPTLPSEL---YKLWAYNNRLT-SLPALPSGLKEL---IVSGNRL 233
Query: 443 TGL 445
T L
Sbjct: 234 TSL 236
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 3e-12
Identities = 42/231 (18%), Positives = 70/231 (30%), Gaps = 70/231 (30%)
Query: 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSL 274
C N L + + L+ L P CL ++ L + NN +P
Sbjct: 36 ACLNNGNAVLNVGESGLTTL-PDCLPAH---ITTLVIPDNNL-----------TSLPALP 80
Query: 275 INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334
+L L + NQ++ + P L L++ + S L +
Sbjct: 81 ---PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP---------SGLCKLW 127
Query: 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSL 394
+ N + +P L Q L++ +N L
Sbjct: 128 IFGNQL-------------------------------TSLPVLPPGL---QELSVSDNQL 153
Query: 395 QGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
+P+ L L NN+ + +P L L +VSDN L L
Sbjct: 154 A-SLPALPSEL---CKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLASL 196
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
+ + + + +P + + L + +N+L +P+ P L +L++S N+
Sbjct: 41 GNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQL 93
Query: 419 SGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
+ +P L L F+ HL L
Sbjct: 94 T-SLPVLPPGLLELSIFSNPLTHLPALPS 121
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 64/354 (18%), Positives = 118/354 (33%), Gaps = 61/354 (17%)
Query: 74 NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF-PNFLQNQYHLLVLDLSDNR 132
L L NR+ L + + L+ + L ++ P N ++L L L NR
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPH-LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192
++ +P + + NL L+IS N + ++ + +L + ++ N+L
Sbjct: 92 LK-LIPLGVFT-GLSNLTKLDISENKIVILLDYMF---QDLYNLKSLEVGDNDLV----Y 142
Query: 193 PPPGTIHYLA-------SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDE 245
L +LT + +L+ L L L H N++ +
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR- 201
Query: 246 LSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305
L VL++ + + + + L L + + ++ + L L
Sbjct: 202 LKVLEISHWPYL----------DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251
Query: 306 VLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIIL 365
L L N I + ++ L L+ I L
Sbjct: 252 FLNLSYN------------------PISTIEGSMLHELLRLQE--------------IQL 279
Query: 366 SNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419
V P + L L+VLN+ N L S ++ NLE+L L +N +
Sbjct: 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 8e-25
Identities = 70/337 (20%), Positives = 125/337 (37%), Gaps = 47/337 (13%)
Query: 109 NLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVV 168
P + +LDL NRI+ + + + +L L ++ N ++ +
Sbjct: 22 RFVAVPEGIPT--ETRLLDLGKNRIK-TLNQDEF-ASFPHLEELELNENIVSAVEPGAF- 76
Query: 169 LPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSH 228
N +L T L SN L+ + P G L++ L L +S
Sbjct: 77 --NNLFNLRTLGLRSNRLK----LIPLGVFTGLSN-----------------LTKLDISE 113
Query: 229 NNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN 288
N + LL + L L++ N+ I R+ + LE L L
Sbjct: 114 NKIVILLDYMFQDLY-NLKSLEVGDNDL-VYIS---------HRAFSGLNSLEQLTLEKC 162
Query: 289 QISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKS 348
++ L L L VL LR I + +L+++++S+ ++ T+
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAI--RDYSFKRLYRLKVLEISHWPYLDTMTPNC 220
Query: 349 FLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNL 408
+N T + +++ + +V ++ +L L+ LNL N + S L L L
Sbjct: 221 LYG------LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 409 ESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
+ + L + + P L +L NVS N LT L
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-23
Identities = 42/247 (17%), Positives = 88/247 (35%), Gaps = 23/247 (9%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
+P I L L N + L + L L+L N +
Sbjct: 19 HRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIV-SAVE- 72
Query: 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322
P + N L LGL +N++ L NL L + N +
Sbjct: 73 --------PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL--LDY 122
Query: 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLK 382
L+ +++ +N + + ++F N+++ + L + S+ ++++L
Sbjct: 123 MFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLT-----LEKCNLTSIPTEALSHLH 176
Query: 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442
GL VL L++ ++ L L+ L++S+ + + + L +++ +L
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236
Query: 443 TGLIPPG 449
T +P
Sbjct: 237 TA-VPYL 242
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 9/188 (4%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L+ L L N + ++ +L L + + N++ S + L +L L+++ Y
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNF-LQN 119
T+ + L NL L+++ L+ + L+++ L ++ L
Sbjct: 214 DTMTPNCLYGL--NLTSLSITHCNLTAVPYLAVRHLVY-LRFLNLSYNPISTIEGSMLHE 270
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
L + L ++ V + + L LN+S N LT ++ + N L T
Sbjct: 271 LLRLQEIQLVGGQLA-VVEPYAFR-GLNYLRVLNVSGNQLTTLEESVFHSVGN---LETL 325
Query: 180 DLSSNNLQ 187
L SN L
Sbjct: 326 ILDSNPLA 333
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 66/379 (17%), Positives = 130/379 (34%), Gaps = 55/379 (14%)
Query: 74 NLEFLALSLNRLSV-LTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDN 131
+ F + ++ + + + T K + ++ + K P L + + +L+L+D
Sbjct: 20 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79
Query: 132 RIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLP 191
+I+ ++ + + L + N + H+ N L L N+L
Sbjct: 80 QIE-EIDTYAFA-YAHTIQKLYMGFNAIRYLPPHV---FQNVPLLTVLVLERNDLS---- 130
Query: 192 VPPPGTIHYLA-------SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSD 244
P G H SNN+L L++L LS N L+ + + +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS--- 187
Query: 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNL 304
L ++ N +L +E L +N I+ L
Sbjct: 188 -LFHANVSYNLL---------------STLAIPIAVEELDASHNSIN-VVRG--PVNVEL 228
Query: 305 NVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGII 364
+L L+ N + + + L +DLS N + + F+ ++ +
Sbjct: 229 TILKLQHNN----LTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLY----- 278
Query: 365 LSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQ 424
+SNN + + + L+VL+L +N L H+ LE+L L +N +
Sbjct: 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL 335
Query: 425 QLVELTFLEFFNVSDNHLT 443
L+ +S N
Sbjct: 336 ST--HHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-23
Identities = 65/420 (15%), Positives = 127/420 (30%), Gaps = 91/420 (21%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+++ + L + + + + + L + Q+ L+L
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQN 119
I ++ L + N + L L + L +L+ P N
Sbjct: 83 -EID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHN 139
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
L L +S+N ++ ++ +L L +S N LT D + L
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQ-ATTSLQNLQLSSNRLTHVD------LSLIPSLFHA 191
Query: 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
++S N L T+ + +E L SHN+++ +
Sbjct: 192 NVSYNLLS---------TLAIPIA-----------------VEELDASHNSINVVRGPVN 225
Query: 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299
L++L LQ NN L+N L + L N++
Sbjct: 226 VE----LTILKLQHNNL-----------TDTA-WLLNYPGLVEVDLSYNELEKIMYHPFV 269
Query: 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVN 359
+ L L + +N ++ L+++DLS+N
Sbjct: 270 KMQRLERLYISNN---RLVALNLYGQPIPTLKVLDLSHNHL------------------- 307
Query: 360 TTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419
+ + L+ L L +NS+ + L L++L LS+N +
Sbjct: 308 ------------LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 4e-22
Identities = 60/333 (18%), Positives = 116/333 (34%), Gaps = 47/333 (14%)
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
QY + D+ + V D + N + ++ + L + +
Sbjct: 18 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL---LDSFRQVELL 74
Query: 180 DLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTGEIPSWICNLNILESLVLSHNNLS 232
+L+ ++ Y N++ P N+ +L LVL N+LS
Sbjct: 75 NLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130
Query: 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
L N+ +L+ L + NN I + + L+ L L +N+++
Sbjct: 131 SLPRGIFHNTP-KLTTLSMSNNNL-ERIE---------DDTFQATTSLQNLQLSSNRLT- 178
Query: 293 TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW 352
L +P+L + N+ + + +D S+N I +
Sbjct: 179 HVD--LSLIPSLFHANVSYNLLSTLAIPIA-------VEELDASHN-SINVVRGPVN--- 225
Query: 353 NAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLD 412
V T + L +N+ A + N GL ++L N L+ + + LE L
Sbjct: 226 -----VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 413 LSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
+SNN+ + + L+ ++S NHL +
Sbjct: 279 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV 310
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 8/176 (4%)
Query: 270 IPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSK 329
I +L + + F TL N ++ +++ + F +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL--PAALLDSFRQ 70
Query: 330 LRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNL 389
+ +++L++ I + +F + + N+ + P N+ L VL L
Sbjct: 71 VELLNLNDL-QIEEIDTYAF-----AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124
Query: 390 QNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
+ N L N P L +L +SNN T L+ +S N LT +
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 18/127 (14%), Positives = 47/127 (37%)
Query: 319 KEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI 378
++P C S L+ + ++ I + + + + N + N++ + A +
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65
Query: 379 ANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVS 438
+ + +++LNL + ++ ++ L + N P + L +
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125
Query: 439 DNHLTGL 445
N L+ L
Sbjct: 126 RNDLSSL 132
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 9e-25
Identities = 82/444 (18%), Positives = 149/444 (33%), Gaps = 78/444 (17%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
LQ +N + ++ N++S + A ++ L R
Sbjct: 13 LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71
Query: 61 GTIKLDV-------LLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF 113
+L++ L +LE L S N L+ L + + S L L+
Sbjct: 72 QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKS--LLVDNNNLKALSDL 129
Query: 114 PNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANK 173
P L+ L +S+N+++ K+P+ N L +++ +N L LP
Sbjct: 130 PPLLE------YLGVSNNQLE-KLPEL---QNSSFLKIIDVDNNSLK-------KLPDLP 172
Query: 174 GDLLTFDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLS 232
L +N L+ + + + A NNSL ++P + LES+V +N L
Sbjct: 173 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE 228
Query: 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
LP+ L+ + N + +P LE L + +N ++
Sbjct: 229 -ELPELQNLPF--LTTIYADNNLL-----------KTLPDLP---PSLEALNVRDNYLT- 270
Query: 293 TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW 352
P +L L+V + + L ++ S+N I +L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPP---------NLYYLNASSN-EIRSLCD------ 314
Query: 353 NAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLD 412
+ + +SNN +PA L+ L N L +P NL+ L
Sbjct: 315 ---LPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-EVPELPQ---NLKQLH 363
Query: 413 LSNNKFSGQIPQQLVELTFLEFFN 436
+ N + P + L +
Sbjct: 364 VEYNPLR-EFPDIPESVEDLRMNS 386
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-24
Identities = 79/456 (17%), Positives = 142/456 (31%), Gaps = 75/456 (16%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSG---------QITSSLRNLSQLFF 51
Y + + + G R + + C ++S L
Sbjct: 36 KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLES 95
Query: 52 LDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLT 111
L + NS +L L S K+L +L LS L L+Y+G+ + L
Sbjct: 96 LVASCNSLT---ELPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLE 144
Query: 112 KFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ------- 164
K P QN L ++D+ +N ++ K+P +L + +N L +
Sbjct: 145 KLPEL-QNSSFLKIIDVDNNSLK-KLPDLP-----PSLEFIAAGNNQLEELPELQNLPFL 197
Query: 165 --------HLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWI 215
L LP L + +N L+ + + + A NN L +P
Sbjct: 198 TAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLP 256
Query: 216 CNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN---TFIKERRIPR 272
+L E+L + N L+ L P+ + + L V + + PN I
Sbjct: 257 PSL---EALNVRDNYLTDL-PELPQSLT-FLDVSENIFSGLSELPPNLYYLNASSNEIRS 311
Query: 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRI 332
LE L + NN++ P+ L LI N + + P L+
Sbjct: 312 LCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPELP------QNLKQ 361
Query: 333 IDLSNNIF---------IGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKG 383
+ + N + L + S L N + + N P ++
Sbjct: 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL-REFPDIPESV-- 418
Query: 384 LQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419
+ L + + + LE ++
Sbjct: 419 -EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 1e-21
Identities = 73/383 (19%), Positives = 123/383 (32%), Gaps = 86/383 (22%)
Query: 93 SNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLL---------- 142
N ++ L+ S NLT+ P +N + + + P
Sbjct: 6 RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65
Query: 143 -DPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQG------------- 188
D + + L +++ L+ LP L + S N+L
Sbjct: 66 RDCLDRQAHELELNNLGLS-------SLPELPPHLESLVASCNSLTELPELPQSLKSLLV 118
Query: 189 ------PLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNS 242
L PP + SNN L ++P + N + L+ + + +N+L LP +
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDLPPS- 174
Query: 243 SDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLP 302
L + GNN +P L N L + NN +
Sbjct: 175 ---LEFIAA-GNNQLEELPE-----------LQNLPFLTAIYADNNSLKKLPDL----PL 215
Query: 303 NLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTG 362
+L ++ +N I++E L I NN + TLP +
Sbjct: 216 SLESIVAGNN----ILEELPELQNLPFLTTIYADNN-LLKTLP---------DLPPSLEA 261
Query: 363 IILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQI 422
+ + +N +P +L L V + L PNL L+ S+N+ +
Sbjct: 262 LNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIR-SL 312
Query: 423 PQQLVELTFLEFFNVSDNHLTGL 445
L L NVS+N L L
Sbjct: 313 CDLPPSLEEL---NVSNNKLIEL 332
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Query: 374 IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433
I + LQ +++L +P N+ + + +++ P E +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 434 FFNVSDNHLTGL 445
+ D
Sbjct: 62 VSRLRDCLDRQA 73
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 57/323 (17%), Positives = 100/323 (30%), Gaps = 47/323 (14%)
Query: 142 LDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL 201
+ N ++ + L L + ++ DLS N L +
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASL---RQSAWNVKELDLSGNPLSQI----SAADLAPF 57
Query: 202 A-------SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGN 254
S+N L E + +L+ L +L L++N + LL + L N
Sbjct: 58 TKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQELLV------GPSIETLHAANN 109
Query: 255 NFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF 314
N R+ S + + L NN+I+ G + L L+ N
Sbjct: 110 NI-----------SRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 315 YGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI 374
+ L ++L N FI + + + LS+N + +
Sbjct: 157 -DTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVF-------AKLKTLDLSSNKL-AFM 206
Query: 375 PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEF 434
+ G+ ++L+NN L I L NLE DL N F +
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRV 264
Query: 435 FNVSDNHLTGLIPPGKQFATFDN 457
V+ + L ++ T
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPT 287
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 65/385 (16%), Positives = 124/385 (32%), Gaps = 74/385 (19%)
Query: 39 ITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQ 98
I +N ++ + +S L L S N++ L LS N LS ++ A ++
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 99 KLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF 158
L+ + L S L + + L LDL++N +Q ++ L+ ++N
Sbjct: 60 -LELLNLSSNVLYETLDLESLS-TLRTLDLNNNYVQEL-------LVGPSIETLHAANNN 110
Query: 159 LTGFDQHLVVLPANKGDLLTF-DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICN 217
++ + ++G L++N + +
Sbjct: 111 IS-------RVSCSRGQGKKNIYLANNKITML----RDLDEGCRSR-------------- 145
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC 277
++ L L N + + L SSD L L+LQ N + +
Sbjct: 146 ---VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-----------YDVK-GQVVF 190
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
+KL+ L L +N+++ + + + LR+N I + L DL
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI---EKALRFSQNLEHFDLRG 246
Query: 338 NIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGH 397
N F F N +V ++ L G +L +
Sbjct: 247 NGFHCGTLRDFF---------------SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 398 IPSCLGNLPN---LESLDLSNNKFS 419
C +LP + L ++
Sbjct: 292 GAYCCEDLPAPFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 45/306 (14%), Positives = 95/306 (31%), Gaps = 51/306 (16%)
Query: 19 IGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVL----LTSWKN 74
N + + ++ + S ++ + LDL+ N L + L +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN------PLSQISAADLAPFTK 59
Query: 75 LEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQ 134
LE L LS N L S + L+ + L + + + + L ++N I
Sbjct: 60 LELLNLSSNVLYETLDLESLS---TLRTLDLNNNYVQELLVGPS----IETLHAANNNIS 112
Query: 135 GKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPP 194
+ Q + +++N +T + + DL N + V
Sbjct: 113 R-----VSCSRGQGKKNIYLANNKITMLRDLDEGCRSR---VQYLDLKLNEIDT---VNF 161
Query: 195 PGTIHYLA-------SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELS 247
N + ++ + L++L LS N L+ + P+ + ++
Sbjct: 162 AELAASSDTLEHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLAFMGPEFQSAAG--VT 217
Query: 248 VLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS-DTFPSWLGTLPNLNV 306
+ L+ N I ++L LE L N T + +
Sbjct: 218 WISLRNNKL-----------VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266
Query: 307 LILRSN 312
+ ++
Sbjct: 267 VAKQTV 272
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 39/236 (16%), Positives = 70/236 (29%), Gaps = 54/236 (22%)
Query: 211 IPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI 270
I N N + ++ ++L L ++ + + LDL GN
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLA----- 55
Query: 271 PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKL 330
+KLE L L +N + +T L +L L L L +N + +
Sbjct: 56 -----PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-------LVGPSI 101
Query: 331 RIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQ 390
+ +NN I + +G + + L
Sbjct: 102 ETLHAANN-NISRVSCSRG--------------------------------QGKKNIYLA 128
Query: 391 NNSLQGHIPSCLGNLPNLESLDLSNNKFSG-QIPQQLVELTFLEFFNVSDNHLTGL 445
NN + G ++ LDL N+ + LE N+ N + +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 62/313 (19%), Positives = 100/313 (31%), Gaps = 63/313 (20%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
++ L L N S + LE ++++ + T L +LS L LDL N
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNN--- 90
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNF-LQN 119
+ LL ++E L + N +S + S + Q K I L + +T +
Sbjct: 91 ---YVQELLVG-PSIETLHAANNNISRV----SCSRGQGKKNIYLANNKITMLRDLDEGC 142
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
+ + LDL N I V L + L LN+ +NF+ L T
Sbjct: 143 RSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTL 196
Query: 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
DLSSN L + + + + L +N L + + L
Sbjct: 197 DLSSNKLA----------------------FMGPEFQSAAGVTWISLRNNKLVL-IEKAL 233
Query: 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299
S + L DL+GN +C L N ++ +
Sbjct: 234 RFSQN-LEHFDLRGNG-------------------FHCGTLRDFFSKNQRVQTVAKQTVK 273
Query: 300 TLPNLNVLILRSN 312
L N
Sbjct: 274 KLTGQNEEECTVP 286
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 374 IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433
I N ++ + ++SL+ + S + N++ LDLS N S L T LE
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 434 FFNVSDNHLTGLIP 447
N+S N L +
Sbjct: 62 LLNLSSNVLYETLD 75
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 6e-09
Identities = 41/229 (17%), Positives = 70/229 (30%), Gaps = 13/229 (5%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
++ L+ NN S S + + I++A ++ S++ +LDL N
Sbjct: 101 IETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
T+ L S LE L L N + + KLK + L S L Q+
Sbjct: 158 -TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLAFMGPEFQSA 213
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
+ + L +N++ + K L QNL ++ N + + T
Sbjct: 214 AGVTWISLRNNKLV-LIEKALR--FSQNLEHFDLRGNGFHCGTLRDFFSKNQR--VQTVA 268
Query: 181 LSSN-NLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSH 228
+ L G + L L H
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 75/386 (19%), Positives = 130/386 (33%), Gaps = 34/386 (8%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT-SNTTSQK 99
+S L L FL + + + I+ + +L L L N+ L +
Sbjct: 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSSLIILKLDYNQFLQLETGAFNGLA--N 104
Query: 100 LKYIGLRSCNLTKF---PNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISH 156
L+ + L CNL NF + L +L L DN I+ P NM+ + L+++
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTF 163
Query: 157 NFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWIC 216
N + +L LSS LQ + L E
Sbjct: 164 NKVKSI-CEEDLLNFQGKHFTLLRLSSITLQD-------------MNEYWLGWEKCGNPF 209
Query: 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI----PNTFIKERRIPR 272
+ +L LS N + + ++ + L +N + F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRI 332
+ S ++ L ++I S +L L L N I + G + L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI--DDNAFWGLTHLLK 327
Query: 333 IDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNN 392
++LS N F+G++ + F + + LS N ++ S L L+ L L N
Sbjct: 328 LNLSQN-FLGSIDSRMF-----ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 393 SLQGHIPSCLGNLPNLESLDLSNNKF 418
L+ L +L+ + L N +
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 6e-19
Identities = 65/372 (17%), Positives = 127/372 (34%), Gaps = 40/372 (10%)
Query: 106 RSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQH 165
+ L + P + + +DLS N I ++ + +Q+L L +
Sbjct: 18 INRGLHQVPELPAH---VNYVDLSLNSIA-ELNETSFS-RLQDLQFLKVEQQTPG----- 67
Query: 166 LVVLPANKGDLLT----FDLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTGEI--P 212
+V+ N L+ L N G + LA + +L G +
Sbjct: 68 -LVIRNNTFRGLSSLIILKLDYNQFL----QLETGAFNGLANLEVLTLTQCNLDGAVLSG 122
Query: 213 SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPR 272
++ L LE LVL NN+ + P + VLDL N + +
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182
Query: 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD-CGFSKLR 331
+L+ S + + + ++ L L N F + + D +K++
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242
Query: 332 IIDLSNN-IFIGTLPLKSFLC-----WNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQ 385
+ LSN+ + +F + ++ LS + +++ + ++ L+
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE 302
Query: 386 VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
L L N + + L +L L+LS N + L LE ++S NH+
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA- 361
Query: 446 IPPGKQFATFDN 457
+ +F
Sbjct: 362 LGDQ----SFLG 369
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 52/273 (19%), Positives = 91/273 (33%), Gaps = 36/273 (13%)
Query: 203 SNNSLTG--EIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260
N L E+P+ + + LS N+++ L +L L ++ I
Sbjct: 18 INRGLHQVPELPAHV------NYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVI 70
Query: 261 PNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320
+ S L L L NQ L NL VL L G +
Sbjct: 71 R---------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121
Query: 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIAN 380
+ L ++ L +N P FL +++ L+ N S+ + N
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD-----LTFNKVKSICEEDLLN 176
Query: 381 LKG--LQVLNLQNNSLQ--------GHIPSCLGNLPNLESLDLSNNKFSGQIPQ---QLV 427
+G +L L + +LQ ++ +LDLS N F + + +
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236
Query: 428 ELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSF 460
T ++ +S+++ G F DN +F
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 10/196 (5%)
Query: 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339
+ ++ L N I++ + L +L L + +I T G S L I+ L N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDYNQ 90
Query: 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS-VIPASI-ANLKGLQVLNLQNNSLQGH 397
L +F + N + L+ + D V+ + L L++L L++N+++
Sbjct: 91 -FLQLETGAF-----NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
Query: 398 IPSCL-GNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFD 456
P+ N+ LDL+ NK + L+ F + + +T
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 457 NTSFDSNSGLCGRPLS 472
+ N+ + LS
Sbjct: 205 CGNPFKNTSITTLDLS 220
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 57/462 (12%), Positives = 135/462 (29%), Gaps = 64/462 (13%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+ + ++ L + +++ + ++ +S + L ++L L+L+ N
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQN 119
T+ L+ L L L L+ N + L S ++ + + N+++ + Q
Sbjct: 72 ETLDLESL----STLRTLDLNNNYVQELLVGPS------IETLHAANNNISRVSCSRGQG 121
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
+ L++N+I + + L++ N + + L A+ L
Sbjct: 122 ---KKNIYLANNKIT-MLRDLDEG-CRSRVQYLDLKLNEIDTVNFA--ELAASSDTLEHL 174
Query: 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
+L N + ++ + L++L LS N L+ + P+
Sbjct: 175 NLQYNFIY----------------------DVKGQV-VFAKLKTLDLSSNKLAFMGPEFQ 211
Query: 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS-DTFPSWL 298
+ ++ + L+ N I ++L LE L N T +
Sbjct: 212 SAAG--VTWISLRNNKL-----------VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258
Query: 299 GTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIV 358
+ + + + +C + + LP A+K
Sbjct: 259 SKNQRV--QTVAKQTVKKLTGQNEEEC--TVPTLGHYGAY-CCEDLPAPFADRLIALKRK 313
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
+ + + + N + ++ + I +L+
Sbjct: 314 EHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372
Query: 419 SGQIP---QQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDN 457
Q+ + EL V L
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRA 414
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 54/391 (13%), Positives = 125/391 (31%), Gaps = 33/391 (8%)
Query: 74 NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF-PNFLQNQYHLLVLDLSDNR 132
+ ++ + L + + +K + L L++ L L +L+LS N
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192
+ + ++ L L++++N++ L+V P+ + T ++NN+ +
Sbjct: 70 LYETLDLE----SLSTLRTLDLNNNYVQ----ELLVGPS----IETLHAANNNISR-VSC 116
Query: 193 PPPGTIHYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDL 251
+ +NN +T + ++ L L N + + L SSD L L+L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 252 QGNNFFGTIPNTFIKE-----------RRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT 300
Q N + + + + + + ++ L NN++ L
Sbjct: 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235
Query: 301 LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360
NL LR N F+ +++ + + L ++ + +
Sbjct: 236 SQNLEHFDLRGNGFHCGT-LRDFFSKNQRVQTVAKQT---VKKLTGQNEEECTVPTLGHY 291
Query: 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420
+ K +L+ Q + + + N +D ++
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRT 350
Query: 421 QIPQQLVELTFLEFFNVSDNHLTGLIPPGKQ 451
I Q + L + G++
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 2e-22
Identities = 80/456 (17%), Positives = 134/456 (29%), Gaps = 55/456 (12%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
++ L L N S + LE ++++ + T L +LS L LDL N
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNN--- 90
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQN 119
+ LL ++E L + N +S + S + Q K I L + +T
Sbjct: 91 ---YVQELLVG-PSIETLHAANNNISRV----SCSRGQGKKNIYLANNKITMLRDLDEGC 142
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
+ + LDL N I V L + L LN+ +NF+ L T
Sbjct: 143 RSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTL 196
Query: 180 DLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTGEIPSWICNLNILESLVLSHNNLS 232
DLSSN L + P A NN L I + LE L N
Sbjct: 197 DLSSNKLAF---MGP--EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
Query: 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
+ + + + + Q ++ C+ G D
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLT------------GQNEEECTVPTLGHYGAYCCED 298
Query: 293 TFPSWLGTLPNLNVLILRSNIFYG--IIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFL 350
+ L L G + ++ R ID T+ + L
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE-QYRTVIDQVTL 357
Query: 351 CWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLES 410
A + + D + L Q + L+
Sbjct: 358 RKQAKITLE-----QKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQL 411
Query: 411 LDLSNNKFS-GQIPQQLVELTFLEFFNVSDNHLTGL 445
L ++ + QQ V+ + +++ + T L
Sbjct: 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 8e-09
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 374 IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433
I N ++ + ++SL+ + S + N++ LDLS N S L T LE
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 434 FFNVSDNHLTGLIP 447
N+S N L +
Sbjct: 62 LLNLSSNVLYETLD 75
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 66/379 (17%), Positives = 129/379 (34%), Gaps = 55/379 (14%)
Query: 74 NLEFLALSLNRLSV-LTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDN 131
+ F + ++ + + + T K + ++ + K P L + + +L+L+D
Sbjct: 26 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85
Query: 132 RIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLP 191
+I+ ++ + + L + N + H+ N L L N+L
Sbjct: 86 QIE-EIDTYAFA-YAHTIQKLYMGFNAIRYLPPHV---FQNVPLLTVLVLERNDLS---- 136
Query: 192 VPPPGTIHYLA-------SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSD 244
P G H SNN+L L++L LS N L+ + + +
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS--- 193
Query: 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNL 304
L ++ N +L +E L +N I+ L
Sbjct: 194 -LFHANVSYNLL---------------STLAIPIAVEELDASHNSINVVRG---PVNVEL 234
Query: 305 NVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGII 364
+L L+ N + + + L +DLS N + + F+ ++ +
Sbjct: 235 TILKLQHNN----LTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLY----- 284
Query: 365 LSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQ 424
+SNN + + L+VL+L +N L H+ LE+L L +N +
Sbjct: 285 ISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL 341
Query: 425 QLVELTFLEFFNVSDNHLT 443
L+ +S N
Sbjct: 342 ST--HHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 7e-22
Identities = 67/422 (15%), Positives = 129/422 (30%), Gaps = 93/422 (22%)
Query: 1 LQFLYLRLNNFSGDLLGSI--GNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS 58
F + ++ + D+ L + + + + + L + Q+ L+L
Sbjct: 27 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86
Query: 59 YRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFL 117
I ++ L + N + L L + L +L+ P
Sbjct: 87 IE-EIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIF 143
Query: 118 QNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLL 177
N L L +S+N ++ ++ +L L +S N LT D + L
Sbjct: 144 HNTPKLTTLSMSNNNLE-RIEDDTFQ-ATTSLQNLQLSSNRLTHVD------LSLIPSLF 195
Query: 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237
++S N L S + +E L SHN+++ +
Sbjct: 196 HANVSYNLL--------------------------STLAIPIAVEELDASHNSINVVRGP 229
Query: 238 CLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSW 297
L++L LQ NN L+N L + L N++
Sbjct: 230 VNVE----LTILKLQHNNL-----------TDTA-WLLNYPGLVEVDLSYNELEKIMYHP 273
Query: 298 LGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357
+ L L + +N ++ L+++DLS+N
Sbjct: 274 FVKMQRLERLYISNN---RLVALNLYGQPIPTLKVLDLSHNHL----------------- 313
Query: 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417
+ + L+ L L +NS+ + L L++L LS+N
Sbjct: 314 --------------LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 356
Query: 418 FS 419
+
Sbjct: 357 WD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 4e-21
Identities = 60/333 (18%), Positives = 116/333 (34%), Gaps = 47/333 (14%)
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
QY + D+ + V D + N + ++ + L + +
Sbjct: 24 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL---LDSFRQVELL 80
Query: 180 DLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTGEIPSWICNLNILESLVLSHNNLS 232
+L+ ++ Y N++ P N+ +L LVL N+LS
Sbjct: 81 NLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136
Query: 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
L N+ +L+ L + NN I + + L+ L L +N+++
Sbjct: 137 SLPRGIFHNTP-KLTTLSMSNNNL-ERIE---------DDTFQATTSLQNLQLSSNRLT- 184
Query: 293 TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW 352
L +P+L + N+ + + +D S+N I +
Sbjct: 185 HVD--LSLIPSLFHANVSYNLLSTLAIPIA-------VEELDASHN-SINVVRGPVN--- 231
Query: 353 NAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLD 412
V T + L +N+ A + N GL ++L N L+ + + LE L
Sbjct: 232 -----VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284
Query: 413 LSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
+SNN+ + + L+ ++S NHL +
Sbjct: 285 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV 316
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 5e-16
Identities = 43/248 (17%), Positives = 85/248 (34%), Gaps = 33/248 (13%)
Query: 204 NNSLTGEIPSWIC-NLNILESLVLSHNNLSGLLPQCLGNSSD----ELSVLDLQGNNFFG 258
++ P + C + N+ V ++ D ++ + +
Sbjct: 6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-- 63
Query: 259 TIPNTFIKERRIPRS-LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGI 317
R++P + L + ++E L L + QI + + L + N +
Sbjct: 64 ---------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114
Query: 318 IKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPAS 377
P L ++ L N + +LP F T + +SNN+ + + +
Sbjct: 115 --PPHVFQNVPLLTVLVLERN-DLSSLPRGIF-----HNTPKLTTLSMSNNNLERIEDDT 166
Query: 378 IANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437
LQ L L +N L H+ L +P+L ++S N S L +E +
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 218
Query: 438 SDNHLTGL 445
S N + +
Sbjct: 219 SHNSINVV 226
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 1e-22
Identities = 64/274 (23%), Positives = 101/274 (36%), Gaps = 30/274 (10%)
Query: 175 DLLTFDLSSNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNL 231
L S L+ VP PP T NN +T NL L +L+L +N +
Sbjct: 32 HLRVVQCSDLGLEK---VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 232 SGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS 291
S + P +L L L N L+ L + N+I+
Sbjct: 89 SKISPGAFAPLV-KLERLYLSKNQLKELPEKMP-------------KTLQELRVHENEIT 134
Query: 292 DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLC 351
S L + V+ L +N E G KL I +++ I T+P
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP-- 191
Query: 352 WNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESL 411
+ T + L N V AS+ L L L L NS+ L N P+L L
Sbjct: 192 ------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 412 DLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
L+NNK ++P L + +++ + +N+++ +
Sbjct: 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 59/349 (16%), Positives = 112/349 (32%), Gaps = 74/349 (21%)
Query: 73 KNLEFLALSLNRLSVLTKAT-SNTTSQKLKYIGLRSCNLTKF-PNFLQNQYHLLVLDLSD 130
+ L L N+++ + N + L + L + ++K P L L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKN--LHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 131 NRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPL 190
N+++ ++P+ + + L L + N +T + + ++ +L +N L+
Sbjct: 110 NQLK-ELPEKMP----KTLQELRVHENEITKVRKSV---FNGLNQMIVVELGTNPLK--S 159
Query: 191 PVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLD 250
G + L + ++ N++ + + L+ L
Sbjct: 160 SGIENGAFQGMKK-----------------LSYIRIADTNITTIPQGLPPS----LTELH 198
Query: 251 LQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILR 310
L GN + SL + L LGL N IS L P+L L L
Sbjct: 199 LDGNKI-TKVD---------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 311 SNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSF 370
+N + P ++++ L NN I + F
Sbjct: 249 NNKLVKV---PGGLADHKYIQVVYLHNN-NISAIGSNDFCP------------------- 285
Query: 371 DSVIPASIANLKGLQVLNLQNNSLQGHI--PSCLGNLPNLESLDLSNNK 417
P ++L +N +Q PS + ++ L N K
Sbjct: 286 ----PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 63/307 (20%), Positives = 105/307 (34%), Gaps = 56/307 (18%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100
+NL L L L N I LE L LS N+L L + L
Sbjct: 70 GDFKNLKNLHTLILINNKIS-KISPGA-FAPLVKLERLYLSKNQLKEL----PEKMPKTL 123
Query: 101 KYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQ-GKVPKWLLDPNMQNLNALNISHNF 158
+ + + +TK + ++V++L N ++ + M+ L+ + I+
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTN 182
Query: 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNL 218
+T Q LP + L L N + ++ L
Sbjct: 183 ITTIPQG---LPPS---LTELHLDGNKIT----KVDAASLK-----------------GL 215
Query: 219 NILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCS 278
N L L LS N++S + L N+ L L L N ++P L +
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKL-----------VKVPGGLADHK 263
Query: 279 KLEFLGLGNNQIS----DTF--PSWLGTLPNLNVLILRSN-IFYGIIKEPRTDCGFSKLR 331
++ + L NN IS + F P + + + + L SN + Y I +P T
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI-QPSTFRCVYVRA 322
Query: 332 IIDLSNN 338
+ L N
Sbjct: 323 AVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 12/166 (7%)
Query: 1 LQFLYLRLNNFSGDLL--GSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS 58
+ + L N + G+ ++ L I IA N++ I L L L L N
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNK 203
Query: 59 YRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQ 118
+ L NL L LS N +S + + T L+ + L + L K P L
Sbjct: 204 IT-KVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNNKLVKVPGGLA 260
Query: 119 NQYHLLVLDLSDNRIQ----GKVPKWLLDPNMQNLNALNISHNFLT 160
+ ++ V+ L +N I + + + +++ N +
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 8e-08
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
+T + L NN + NLK L L L NN + P L LE L LS N+
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 419 SGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
++P+++ L+ V +N +T +
Sbjct: 113 K-ELPEKM--PKTLQELRVHENEIT-KVRKS 139
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 4e-21
Identities = 84/446 (18%), Positives = 154/446 (34%), Gaps = 42/446 (9%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L + N S I +L L + I+ + S + +L +LDL+ N
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK--FPNFLQ 118
I NL+ L LS N L +LK++GL + +L K
Sbjct: 83 -KISCHPT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 119 NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGF-DQHLVVLPANKGDLL 177
++L L + + + P+ L D N ++L+ + ++ D + + + +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNI--------LESLVLSHN 229
L N L + + SN +L +W + I + +S+
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 230 NLSGLL----PQCLGNSSDELSVLDLQGNNFFGTIPNTF-------------IKERRIPR 272
L G L G S LS+ + + F + R +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317
Query: 273 SLIN-CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLR 331
+ S L NN ++DT G L L LIL+ N + K L+
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377
Query: 332 IIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQN 391
+D+S N + + +S+N I + ++VL+L +
Sbjct: 378 QLDISQNSVSYDEKKGDC-----SWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHS 430
Query: 392 NSLQGHIPSCLGNLPNLESLDLSNNK 417
N ++ IP + L L+ L++++N+
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQ 455
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 56/393 (14%), Positives = 113/393 (28%), Gaps = 44/393 (11%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSD 130
+ L +S N +S L + + S+ L+ + + + F NQ L LDLS
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSK-LRILIISHNRIQYLDISVFKFNQ-ELEYLDLSH 78
Query: 131 NRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQ--- 187
N++ + NL L++S N N L LS+ +L+
Sbjct: 79 NKLVK-----ISCHPTVNLKHLDLSFNAFDALPICKEF--GNMSQLKFLGLSTTHLEKSS 131
Query: 188 -GPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILE-SLVLSHNNLSGLLPQCLGNSSDE 245
P+ + + E P + + N +V N + +
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191
Query: 246 LSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305
L + +++ + F+ ++ S L + S L +
Sbjct: 192 LELSNIK-CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250
Query: 306 VLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIIL 365
+ + G + D + L+ + + +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ---------------------------V 283
Query: 366 SNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQ 425
++ F + + N + + C + LD SNN + + +
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343
Query: 426 LVELTFLEFFNVSDNHLTGLIPPGKQFATFDNT 458
LT LE + N L L + +
Sbjct: 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 62/411 (15%), Positives = 126/411 (30%), Gaps = 37/411 (9%)
Query: 1 LQFLYLRLNNF-SGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSY 59
L+ L L N F + + GN+ L+ + ++ ++ + +L+ L + +Y
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151
Query: 60 RGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSC-------NLTK 112
+ L + N+ S T L+ ++
Sbjct: 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211
Query: 113 FPNFLQNQYHLLVLDLSDNRIQGK-VPKWLLDPNMQNLNALNISHNFLTGFDQH-LVVLP 170
LQ L L L++ + L + +IS+ L G
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271
Query: 171 ANKGDLLTF-DLSSNNLQGPLPVPPPG----TIHYLASNNSLTGEIPSWICNLNILESLV 225
L+ + S+ P I + + + ++ L
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLD 330
Query: 226 LSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGL 285
S+N L+ + + G+ ++ L L LQ N + L+ L +
Sbjct: 331 FSNNLLTDTVFENCGHLTE-LETLILQMNQL-KELSKI-------AEMTTQMKSLQQLDI 381
Query: 286 GNNQISDTFPS-WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTL 344
N +S +L L + SNI + + C +++++DL +N
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNI----LTDTIFRCLPPRIKVLDLHSNKI---- 433
Query: 345 PLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ 395
+ +K+ + +++N SV L LQ + L N
Sbjct: 434 ---KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 66/390 (16%), Positives = 132/390 (33%), Gaps = 56/390 (14%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLE-AIHIAKCNVSGQITSSLRN-----LSQLFFLDL 54
L+FL L + + I +L + + + + + L++ L +F +
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 55 AKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLT--K 112
+ V N++ + L+ T+ KL + L + T
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236
Query: 113 FPNFLQNQYH--LLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLP 170
F LQ +H + +S+ ++QG++ D + +L AL+I F +
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296
Query: 171 ANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA----SNNSLTGEIPSWICNLNILESLVL 226
++ + + + + + + P I SNN LT + +L LE+L+L
Sbjct: 297 EIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355
Query: 227 --------------------------SHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260
S N++S + + + L L++ N TI
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415
Query: 261 PNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320
+++ L L +N+I + P + L L L + SN +
Sbjct: 416 FRCLP------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV--P 460
Query: 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFL 350
+ L+ I L N + + P +L
Sbjct: 461 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 490
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 95.0 bits (236), Expect = 9e-21
Identities = 69/433 (15%), Positives = 125/433 (28%), Gaps = 59/433 (13%)
Query: 15 LLGSIGNLRSLE--AIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSW 72
++ I N SL + + S+ + +N +K ++
Sbjct: 3 IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI---- 58
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNR 132
L L+ LS L + ++ + + L P + L LD DNR
Sbjct: 59 NQFSELQLNRLNLSSL----PDNLPPQITVLEITQNALISLPELPAS---LEYLDACDNR 111
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192
+ L +L L++ +N L +LP L + +N L LP
Sbjct: 112 LST------LPELPASLKHLDVDNN-------QLTMLPELPALLEYINADNNQLTM-LPE 157
Query: 193 PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL--LPQCLGNSSDELSVLD 250
P NN LT +P +L E+L +S N L L +P +S +
Sbjct: 158 LPTSLEVLSVRNNQLT-FLPELPESL---EALDVSTNLLESLPAVPVRNHHSEETEIFFR 213
Query: 251 LQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILR 310
+ N IP ++++ + L +N +S L
Sbjct: 214 CRENRI-----------THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262
Query: 311 SNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSF 370
F + T + D F W+A N+F
Sbjct: 263 RIYFSMSDGQQNTLH----RPLADAVTAWFPENKQSDVSQIWHA------FEHEEHANTF 312
Query: 371 DSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT 430
+ + L + + + + L L L + + + +
Sbjct: 313 SAF----LDRLSDTVSAR-NTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRV 367
Query: 431 FLEFFNVSDNHLT 443
L + N+ L
Sbjct: 368 ALTWNNLRKTLLV 380
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 2e-19
Identities = 47/306 (15%), Positives = 96/306 (31%), Gaps = 49/306 (16%)
Query: 152 LNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGE 210
N +N ++G + N L L + +L+
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-S 73
Query: 211 IPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI 270
+P + + L ++ N L L P+ + L LD N +
Sbjct: 74 LPDNLPPQ--ITVLEITQNALISL-PELPAS----LEYLDACDNRL-----------STL 115
Query: 271 PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKL 330
P + L+ + NNQ++ P L + +N + + P + L
Sbjct: 116 PELPASLKHLD---VDNNQLT-MLPELPA---LLEYINADNNQLTMLPELP------TSL 162
Query: 331 RIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQ----V 386
++ + NN + LP + + +S N +S +PA +
Sbjct: 163 EVLSVRNN-QLTFLPEL---------PESLEALDVSTNLLES-LPAVPVRNHHSEETEIF 211
Query: 387 LNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLI 446
+ N + HIP + +L ++ L +N S +I + L + T ++ + +
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270
Query: 447 PPGKQF 452
Sbjct: 271 GQQNTL 276
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 58/269 (21%), Positives = 97/269 (36%), Gaps = 24/269 (8%)
Query: 174 GDLLTFDLSSNNLQG-PLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS 232
NL+ P + + L N + + +L LE L LS N++
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNTRLLNL-HENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
+ + L+ L+L N TIP + + SKL+ L L NN I
Sbjct: 102 TIEIGAFNGLA-NLNTLELFDNRL-TTIP---------NGAFVYLSKLKELWLRNNPIES 150
Query: 293 TFPSWLGTLPNLNVLIL-RSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLC 351
+P+L L L I G S LR ++L+ + +P + L
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYI--SEGAFEGLSNLRYLNLAMC-NLREIPNLTPL- 206
Query: 352 WNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESL 411
+ + LS N ++ P S L LQ L + + +Q + NL +L +
Sbjct: 207 ------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 412 DLSNNKFSGQIPQQLVELTFLEFFNVSDN 440
+L++N + L LE ++ N
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 54/288 (18%), Positives = 99/288 (34%), Gaps = 50/288 (17%)
Query: 109 NLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQH-LV 167
NL + P+ + + +L+L +N+IQ + ++++L L +S N + +
Sbjct: 54 NLREVPDGIST--NTRLLNLHENQIQ-IIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFN 109
Query: 168 VLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLS 227
L L T +L N L P G YL+ L+ L L
Sbjct: 110 GLAN----LNTLELFDNRLT----TIPNGAFVYLSK-----------------LKELWLR 144
Query: 228 HNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGN 287
+N + + L LDL I + S L +L L
Sbjct: 145 NNPIESIPSYAFNRIP-SLRRLDLGELKRLSYIS---------EGAFEGLSNLRYLNLAM 194
Query: 288 NQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLK 347
+ P+ L L+ L L N I P + G L+ + + + I +
Sbjct: 195 CNLR-EIPNLTP-LIKLDELDLSGNHLSAI--RPGSFQGLMHLQKLWMIQS-QIQVIERN 249
Query: 348 SFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ 395
+F ++ +N L++N+ + L L+ ++L +N
Sbjct: 250 AFDNLQSLVEIN-----LAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 48/262 (18%), Positives = 89/262 (33%), Gaps = 42/262 (16%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+ L L N + S +LR LE + +++ ++ + L+ L L+L N
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN--- 122
Query: 61 GTIKLDVLLTSW----KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCN-LTKFP- 114
+L + L+ L L N + + N L+ + L L+
Sbjct: 123 ---RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISE 178
Query: 115 NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKG 174
+ +L L+L+ ++ ++P + L+ L++S N L+
Sbjct: 179 GAFEGLSNLRYLNLAMCNLR-EIPNL---TPLIKLDELDLSGNHLSAIRPGSF---QGLM 231
Query: 175 DLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234
L + + +Q V NL L + L+HNNL+
Sbjct: 232 HLQKLWMIQSQIQ----VIERNAFD-----------------NLQSLVEINLAHNNLTL- 269
Query: 235 LPQCLGNSSDELSVLDLQGNNF 256
LP L L + L N +
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 26/228 (11%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L+ L L N+ +G+ L +L + + ++ + LS+L L L N
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN--- 146
Query: 61 GTIKLDVLLTSW----KNLEFLALS-LNRLSVLTKAT-SNTTSQKLKYIGLRSCNLTKFP 114
++ + + +L L L L RLS +++ ++ L+Y+ L CNL + P
Sbjct: 147 ---PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN--LRYLNLAMCNLREIP 201
Query: 115 NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVV-LPANK 173
N L LDLS N + + + +L L + + + +++ L +
Sbjct: 202 NL-TPLIKLDELDLSGNHLS-AIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQS-- 256
Query: 174 GDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNIL 221
L+ +L+ NNL + P L + W CN +IL
Sbjct: 257 --LVEINLAHNNLT----LLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
NT + L N + S +L+ L++L L N ++ L NL +L+L +N+
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 419 SGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
+ V L+ L+ + +N + IP
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIE-SIPSY 154
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-19
Identities = 51/267 (19%), Positives = 79/267 (29%), Gaps = 48/267 (17%)
Query: 177 LTFDLSSNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG 233
+T LQ VP P + N ++ + L L L N L+
Sbjct: 14 VTTSCPQQGLQA---VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70
Query: 234 LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDT 293
+ + L LDL N ++ P + +L L L + +
Sbjct: 71 IDAAAFTGLA-LLEQLDLSDNAQLRSVD---------PATFHGLGRLHTLHLDRCGLQEL 120
Query: 294 FPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWN 353
P L L L L+ N + L ++ F L
Sbjct: 121 GPGLFRGLAALQYLYLQDN------------------ALQALPDDTFRDLGNLTH----- 157
Query: 354 AMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDL 413
+ L N SV + L L L L N + P +L L +L L
Sbjct: 158 ---------LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 414 SNNKFSGQIPQQLVELTFLEFFNVSDN 440
N S + L L L++ ++DN
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-10
Identities = 47/226 (20%), Positives = 73/226 (32%), Gaps = 37/226 (16%)
Query: 100 LKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF 158
+ I L ++ P + +L +L L N + ++ + L L++S N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFT-GLALLEQLDLSDN- 90
Query: 159 LTGFDQHLVVLPA----NKGDLLTFDLSSNNLQGPLPVPPPGTIHYLAS-------NNSL 207
L + G L T L LQ PG LA+ +N+L
Sbjct: 91 -----AQLRSVDPATFHGLGRLHTLHLDRCGLQ----ELGPGLFRGLAALQYLYLQDNAL 141
Query: 208 TGEIPS-WICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK 266
+P +L L L L N +S + + L L L N +
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNR-VAHVH----- 193
Query: 267 ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSN 312
P + + +L L L N +S L L L L L N
Sbjct: 194 ----PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 47/223 (21%), Positives = 82/223 (36%), Gaps = 14/223 (6%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
Q ++L N S S R+L + + ++ ++ L+ L LDL+ N+
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT-SNTTSQKLKYIGLRSCNLTKFP-NFLQ 118
++ L L L L L + L+Y+ L+ L P + +
Sbjct: 94 RSVDPAT-FHGLGRLHTLHLDRCGLQELGPGLFRGLAA--LQYLYLQDNALQALPDDTFR 150
Query: 119 NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178
+ +L L L NRI VP+ + +L+ L + N + H + G L+T
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFR-GLHSLDRLLLHQNRVAHVHPHAF---RDLGRLMT 205
Query: 179 FDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNIL 221
L +NNL P + L + L W+C+
Sbjct: 206 LYLFANNLS----ALPTEALAPLRALQYLRLNDNPWVCDCRAR 244
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 4e-19
Identities = 57/268 (21%), Positives = 93/268 (34%), Gaps = 25/268 (9%)
Query: 178 TFDLSSNNLQGPLPVPPPGTIHYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGL-L 235
+S L +P P + L +N L L L L LS N LS
Sbjct: 11 EIRCNSKGLTS-VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69
Query: 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295
+ L LDL N + + + +LE L ++ +
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGV-----------ITMSSNFLGLEQLEHLDFQHSNLKQMSE 118
Query: 296 -SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA 354
S +L NL L + G S L ++ ++ N F F
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIF----- 171
Query: 355 MKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLS 414
++ N T + LS + + P + +L LQVLN+ +N+ L +L+ LD S
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231
Query: 415 NNKFSGQIPQQLVE--LTFLEFFNVSDN 440
N +Q ++ + L F N++ N
Sbjct: 232 LNHIM-TSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 63/317 (19%), Positives = 105/317 (33%), Gaps = 71/317 (22%)
Query: 105 LRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFD 163
S LT P + L+L N++Q +P + D + L L++S N L+
Sbjct: 14 CNSKGLTSVPTGIPSS---ATRLELESNKLQ-SLPHGVFD-KLTQLTKLSLSSNGLSFKG 68
Query: 164 QHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILES 223
L DLS N + + S L LE
Sbjct: 69 CCSQSD-FGTTSLKYLDLSFNGVI----------------------TMSSNFLGLEQLEH 105
Query: 224 LVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFL 283
L H+NL + + F ++ L +L
Sbjct: 106 LDFQHSNLKQMSE------------------------FSVF----------LSLRNLIYL 131
Query: 284 GLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGT 343
+ + F L +L VL + N F P L +DLS +
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQC-QLEQ 189
Query: 344 LPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLG 403
L +F ++++++N +S+N+F S+ L LQVL+ N + L
Sbjct: 190 LSPTAFNSLSSLQVLN-----MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Query: 404 NLP-NLESLDLSNNKFS 419
+ P +L L+L+ N F+
Sbjct: 245 HFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 23/245 (9%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
++ LT +P+ I + L L N L L + +L+ L L N
Sbjct: 15 NSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNG------- 63
Query: 263 TFIKERRI-PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP 321
+ + +S + L++L L N + T S L L L + + + E
Sbjct: 64 --LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEF 119
Query: 322 RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI-AN 380
L +D+S+ F ++++++ ++ NSF I
Sbjct: 120 SVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLK-----MAGNSFQENFLPDIFTE 173
Query: 381 LKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440
L+ L L+L L+ P+ +L +L+ L++S+N F L L+ + S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 441 HLTGL 445
H+
Sbjct: 234 HIMTS 238
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-15
Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 27/229 (11%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100
L+QL L L+ N +L++L LS N + ++ L
Sbjct: 46 GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ--L 103
Query: 101 KYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF 158
+++ + NL + + + +L+ LD+S + + + + +L L ++ N
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN-GLSSLEVLKMAGN- 160
Query: 159 LTGFDQHLVVLPANK----GDLLTFDLSSNNLQGPLPVPPPGTIHYLA-------SNNSL 207
+ +L DLS L+ P + L+ S+N+
Sbjct: 161 -----SFQENFLPDIFTELRNLTFLDLSQCQLE----QLSPTAFNSLSSLQVLNMSHNNF 211
Query: 208 TGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF 256
LN L+ L S N++ Q L + L+ L+L N+F
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 10/172 (5%)
Query: 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339
L L +N++ L L L L SN ++D G + L+ +DLS N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN- 88
Query: 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI-ANLKGLQVLNLQNNSLQGHI 398
+ T+ +F + + + +++ + S+ +L+ L L++ + +
Sbjct: 89 GVITMS-SNF-----LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142
Query: 399 PSCLGNLPNLESLDLSNNKFSGQIPQQ-LVELTFLEFFNVSDNHLTGLIPPG 449
L +LE L ++ N F EL L F ++S L + P
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPT 193
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSL--QGHIPSCLGNLPNLESLDLSNN 416
+ T + L +N S+ L L L+L +N L +G +L+ LDLS N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 417 KFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
+ + L LE + ++L +
Sbjct: 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 5e-19
Identities = 52/268 (19%), Positives = 87/268 (32%), Gaps = 28/268 (10%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
+ L+ E+P I + L L NN+ + + L VL L N+ I
Sbjct: 62 TRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSI-RQIE- 115
Query: 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322
+ + L L L +N ++ L L L LR+N I
Sbjct: 116 --------VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI--PSY 165
Query: 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLK 382
L +DL + + +F + N + L + + ++ L
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFE-----GLFNLKYLNLGMCNIKDM--PNLTPLV 218
Query: 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442
GL+ L + N P L +L+ L + N++ S L L N++ N+L
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
Query: 443 TGLIPPGKQFATFDNT---SFDSNSGLC 467
+ L P F N C
Sbjct: 279 SSL--PHDLFTPLRYLVELHLHHNPWNC 304
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 58/309 (18%), Positives = 92/309 (29%), Gaps = 74/309 (23%)
Query: 109 NLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQH-LV 167
L++ P + + + L+L +N IQ ++ +L L + N + +
Sbjct: 65 GLSEVPQGIPS--NTRYLNLMENNIQMIQADTF--RHLHHLEVLQLGRNSIRQIEVGAFN 120
Query: 168 VLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLS 227
L + L T +L N L V P G YL+ L L L
Sbjct: 121 GLAS----LNTLELFDNWLT----VIPSGAFEYLSK-----------------LRELWLR 155
Query: 228 HNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGN 287
+N + + L LDL I + L++L LG
Sbjct: 156 NNPIESIPSYAFNRVP-SLMRLDLGELKKLEYIS---------EGAFEGLFNLKYLNLGM 205
Query: 288 NQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLK 347
I D P+ L L L + N ++ F G LK
Sbjct: 206 CNIKD-MPNLTP-LVGLEELEMSGN------------------HFPEIRPGSFHGLSSLK 245
Query: 348 SFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPN 407
+ + N+ + + L L LNL +N+L L
Sbjct: 246 K--------------LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291
Query: 408 LESLDLSNN 416
L L L +N
Sbjct: 292 LVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 26/226 (11%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT-SNTTSQK 99
+ R+L L L L +NS R I++ +L L L N L+V+ +
Sbjct: 93 DTFRHLHHLEVLQLGRNSIR-QIEVGAF-NGLASLNTLELFDNWLTVIPSGAFEYLSK-- 148
Query: 100 LKYIGLRSCNLTKFPNF-LQNQYHLLVLDLSD-NRIQGKVPKWLLDPNMQNLNALNISHN 157
L+ + LR+ + P++ L+ LDL + +++ + + + + NL LN+
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFE-GLFNLKYLNLGMC 206
Query: 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA-------SNNSLTGE 210
+ +L L L ++S N+ PG+ H L+ N+ ++
Sbjct: 207 NIKDM-PNLTPLVG----LEELEMSGNHFP----EIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 211 IPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF 256
+ L L L L+HNNLS L L L L N +
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLF-TPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 17/163 (10%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITS----SLRNLSQLFFLDLAK 56
L+ L+LR N + + SL + + + ++ + L L +L+L
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK---KLEYISEGAFEGLFNLKYLNLGM 205
Query: 57 NSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT-SNTTSQKLKYIGLRSCNLTKF-P 114
+ IK LT LE L +S N + + +S LK + + + ++
Sbjct: 206 CN----IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS--LKKLWVMNSQVSLIER 259
Query: 115 NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHN 157
N L+ L+L+ N + +P L P ++ L L++ HN
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDLFTP-LRYLVELHLHHN 300
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 1e-18
Identities = 87/476 (18%), Positives = 160/476 (33%), Gaps = 53/476 (11%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+ L L N+ S + I L L + ++ + L +LD++ N +
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK--FPNFLQ 118
I + +L L LS N VL KL ++GL + +
Sbjct: 114 -NISCCPM----ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 119 NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178
++LDL I+G + L PN L+ L N L ++ V L
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLH-LVFHPNSLFSVQVNMSVNALGHLQLSN 227
Query: 179 FDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNI--------LESLVLSHNN 230
L+ N Q + T N +L +W C++ + +E L + +
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 231 LSGLLPQCLGNSSD----ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLG 286
++ + + S+ L + ++ F + + +++ L
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV----------FAEMNIKMLS 337
Query: 287 NNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDC-GFSKLRIIDLSNNIFIGTLP 345
+ + + L N+ C +L+ + L N +
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNV---FTDSVFQGCSTLKRLQTLILQRN-GLKNFF 393
Query: 346 LKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKG----LQVLNLQNNSLQGHIPSC 401
+ N + + + S +S+ + + VLNL +N L G + C
Sbjct: 394 KVAL------MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447
Query: 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDN 457
L P ++ LDL NN+ IP+ + L L+ NV+ N L +P G FD
Sbjct: 448 L--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDG----VFDR 495
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 9e-13
Identities = 64/398 (16%), Positives = 119/398 (29%), Gaps = 46/398 (11%)
Query: 74 NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSDN 131
+ L+LS N +S L + S+ L+ + L + FL NQ L LD+S N
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSE-LRVLRLSHNRIRSLDFHVFLFNQ-DLEYLDVSHN 110
Query: 132 RIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQ-GPL 190
R+Q + M +L L++S N N L LS+ + L
Sbjct: 111 RLQN-----ISCCPMASLRHLDLSFNDFDVLPVCKEF--GNLTKLTFLGLSAAKFRQLDL 163
Query: 191 PVPPPGTIHYLASNNSLT----GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDEL 246
+ + + GE S + LV N+L + N+ L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
Query: 247 SVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNV 306
+ +++ N+ TF+ E +L+N + + W + LN
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN- 282
Query: 307 LILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILS 366
+ + I + L+ + + + +
Sbjct: 283 --IYNLTITERIDREEFTYSETALKSLMIEH---------------------------VK 313
Query: 367 NNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQL 426
N F A + + + L + C + + L+ + N F+ + Q
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC 373
Query: 427 VELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNS 464
L L+ + N L + S
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 5e-10
Identities = 68/378 (17%), Positives = 135/378 (35%), Gaps = 34/378 (8%)
Query: 1 LQFLYLRLNNF-SGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSY 59
L FL L F DLL S + + ++ G T SL+ + + +
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Query: 60 RGTIKLDVLLTSWKNLEFLALSLNRL---SVLTKATSNTTSQKLKYIGLRSCNLT--KFP 114
++++++ + + +L+ + LN ++T + T L + L+ T
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 115 NFLQNQYHLLV--LDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPAN 172
Q + V L++ + I ++ + + L +L I H F L +
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 173 KGDLLTFDLSSNNLQGPLPVPP--PGTIHYLA-SNNSLTGEIPSWICNLNILESLVLSHN 229
++ LS ++ V P P + +L + N T + L L++L+L N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387
Query: 230 NLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN------------- 276
L + + +S L+ + + + + S++
Sbjct: 388 GLKNF--FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445
Query: 277 ---CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDC-GFSKLRI 332
K++ L L NN+I + P + L L L + SN + P + L+
Sbjct: 446 RCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV---PDGVFDRLTSLQY 501
Query: 333 IDLSNNIFIGTLPLKSFL 350
I L +N + T P +L
Sbjct: 502 IWLHDNPWDCTCPGIRYL 519
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 58/300 (19%), Positives = 106/300 (35%), Gaps = 44/300 (14%)
Query: 175 DLLTFDLSSNNLQG-PLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG 233
L S L+ P + P T+ L NN ++ L L +LVL +N +S
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLLDL-QNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 234 LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDT 293
+ + +L L + N+ PN S L L + +N+I
Sbjct: 93 IHEKAFSPLR-KLQKLYISKNHLVEIPPNLP-------------SSLVELRIHDNRIRKV 138
Query: 294 FPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSF---- 349
L N+N + + N EP G KL + +S + +P
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-LKLNYLRISEA-KLTGIPKDLPETLN 196
Query: 350 ---LCWNAMKIVNT---------TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGH 397
L N ++ + + L +N + S++ L L+ L+L NN L
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255
Query: 398 IPSCLGNLPNLESLDLSNNKFSGQIP-------QQLVELTFLEFFNVSDNHLTGL-IPPG 449
+P+ L +L L+ + L N + ++ V+ + ++ +N + + P
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 67/305 (21%), Positives = 110/305 (36%), Gaps = 42/305 (13%)
Query: 100 LKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF 158
+ L++ ++++ + + HL L L +N+I K+ + ++ L L IS N
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFS-PLRKLQKLYISKNH 113
Query: 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLAS-------NNSLT-GE 210
L +L P++ L+ + N ++ P G L + N L
Sbjct: 114 LVEIPPNL---PSS---LVELRIHDNRIR----KVPKGVFSGLRNMNCIEMGGNPLENSG 163
Query: 211 IPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI 270
+ L L +S L+G+ L+ L L N I
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIPKDLPET----LNELHLDHNKI-QAIE--------- 209
Query: 271 PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKL 330
L+ SKL LGLG+NQI L LP L L L +N + + P L
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN---KLSRVPAGLPDLKLL 266
Query: 331 RIIDLSNNIFIGTLPLKSFL-CWNAMKIVNTTGIILSNN--SFDSVIPASIANLKGLQVL 387
+++ L N I + + F +K GI L NN + V PA+ + +
Sbjct: 267 QVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325
Query: 388 NLQNN 392
N
Sbjct: 326 QFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 7e-15
Identities = 55/306 (17%), Positives = 89/306 (29%), Gaps = 55/306 (17%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100
+ L L+ L L N I + + L+ L +S N L + L
Sbjct: 72 DDFKGLQHLYALVLVNNKIS-KIHEKA-FSPLRKLQKLYISKNHLVEI----PPNLPSSL 125
Query: 101 KYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQ-GKVPKWLLDPNMQNLNALNISHNF 158
+ + + K P ++ +++ N ++ D LN L IS
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG--LKLNYLRISEAK 183
Query: 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNL 218
LTG + LP L L N +Q +
Sbjct: 184 LTGIPKD---LPET---LNELHLDHNKIQ----AIELEDLL-----------------RY 216
Query: 219 NILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCS 278
+ L L L HN + + L L L L N R+P L +
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKL-----------SRVPAGLPDLK 264
Query: 279 KLEFLGLGNNQIS----DTFPS--WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRI 332
L+ + L N I+ + F + N + L +N +P T +
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324
Query: 333 IDLSNN 338
I N
Sbjct: 325 IQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 26/170 (15%)
Query: 1 LQFLYLRLNNFSGDLLGSI--GNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS 58
L +L + + I +L +H+ + L S+L+ L L N
Sbjct: 174 LNYLRISEAKLT-----GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 59 YRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN--- 115
R I+ L + L L L N+LS + + L+ + L + N+TK
Sbjct: 229 IR-MIENGSL-SFLPTLRELHLDNNKLSRVPAGLPDLKL--LQVVYLHTNNITKVGVNDF 284
Query: 116 ----FLQNQYHLLVLDLSDNRIQGKVPKWLLDP----NMQNLNALNISHN 157
F + + + L +N + W + P + + A+ +
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVP----YWEVQPATFRCVTDRLAIQFGNY 330
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 55/299 (18%), Positives = 100/299 (33%), Gaps = 42/299 (14%)
Query: 123 LLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLS 182
+ LDLS+NRI + L NL AL ++ N + ++ ++ G L DLS
Sbjct: 54 VKSLDLSNNRIT-YISNSDLQ-RCVNLQALVLTSNGINTIEEDS---FSSLGSLEHLDLS 108
Query: 183 SNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNS 242
N L L+S L L L N L L +
Sbjct: 109 YNYLS----NLSSSWFKPLSS-----------------LTFLNLLGNPYKTLGETSLFSH 147
Query: 243 SDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLP 302
+L +L + + F I + + LE L + + + P L ++
Sbjct: 148 LTKLQILRVGNMDTFTKIQ---------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198
Query: 303 NLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSF---LCWNAMKIVN 359
N++ LIL + S + ++L + + T + +K
Sbjct: 199 NVSHLILHMKQHILL--LEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFT 255
Query: 360 TTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
+ +++ S + + + GL L N L+ L +L+ + L N +
Sbjct: 256 FRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 4e-15
Identities = 53/288 (18%), Positives = 99/288 (34%), Gaps = 35/288 (12%)
Query: 180 DLSSNNLQG-PLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 238
SS +L P + L SNN +T S + L++LVL+ N ++ +
Sbjct: 37 KGSSGSLNSIPSGLTEAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 239 LGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP-SW 297
+ L LDL N + S L FL L N S
Sbjct: 96 FSSLG-SLEHLDLSYNYL-SNLS---------SSWFKPLSSLTFLNLLGNPYKTLGETSL 144
Query: 298 LGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357
L L +L + + + I + + G + L +++ + + + KS I
Sbjct: 145 FSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEIDAS-DLQSYEPKSL-----KSI 197
Query: 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNN--------SLQGHIPSCLGNLPNLE 409
N + +IL ++ + ++ L L++ L + L
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257
Query: 410 SLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDN 457
++ +++ Q+ + L +++ L S N L +P G FD
Sbjct: 258 NVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG----IFDR 299
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 55/264 (20%), Positives = 89/264 (33%), Gaps = 49/264 (18%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
S+ SL IPS + ++SL LS+N ++ + L L L L N TI
Sbjct: 39 SSGSLN-SIPSGLTEA--VKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGI-NTIE- 92
Query: 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322
S + LE L L N +S+ SW L +L L L N + + E
Sbjct: 93 --------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETS 143
Query: 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLK 382
+KL+I+ + N + K F A L
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDF-----------------------------AGLT 174
Query: 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442
L+ L + + LQ + P L ++ N+ L L + + + + +E + D L
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234
Query: 443 TGLIPPGKQFATFDNTSFDSNSGL 466
F+ +S
Sbjct: 235 DTF-----HFSELSTGETNSLIKK 253
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 41/268 (15%), Positives = 86/268 (32%), Gaps = 38/268 (14%)
Query: 74 NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNR 132
++ L LS NR++ ++ + L+ + L S + + + L LDLS N
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192
+ + + +L LN+ N + + ++ L + + + +
Sbjct: 112 LS-NLSSSWFK-PLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQ- 166
Query: 193 PPPGTIHYLAS-------NNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDE 245
L + L P + ++ + L+L LL + +S
Sbjct: 167 --RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-S 223
Query: 246 LSVLDLQGNNF---------------------FGTIPNTFIKERRIPRSLINCSKLEFLG 284
+ L+L+ + F + T ++ + L S L L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283
Query: 285 LGNNQISDTFPSWLGTLPNLNVLILRSN 312
NQ+ L +L + L +N
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 3e-17
Identities = 70/424 (16%), Positives = 122/424 (28%), Gaps = 66/424 (15%)
Query: 25 LEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNR 84
+ A + T S L+ L LD +S ++ L L L + N
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKL----TGLTKLICTSNN 75
Query: 85 LSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDP 144
++ L + + L Y+ S LT + L L+ N++
Sbjct: 76 ITTL----DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS----- 124
Query: 145 NMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL-AS 203
L LN + N LT D ++ L D N L V P + L S
Sbjct: 125 QNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178
Query: 204 NNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNT 263
N +T E+ + +L L NN++ L L+ LD N T
Sbjct: 179 FNKIT-ELD--VSQNKLLNRLNCDTNNITKLDLNQNIQ----LTFLDCSSNKL------T 225
Query: 264 FIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRT 323
I + ++L + N +++ + TL L L I
Sbjct: 226 EI-------DVTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLEI-----D 270
Query: 324 DCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKG 383
++L I L + + + ++
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHN--------TQLYLLDCQAAGITEL---DLSQNPK 319
Query: 384 LQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443
L L L N L + + + L+SL N + ++ L ++
Sbjct: 320 LVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374
Query: 444 GLIP 447
+
Sbjct: 375 TMPK 378
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 78/470 (16%), Positives = 143/470 (30%), Gaps = 97/470 (20%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITS-SLRNLSQLFFLDLAKNSY 59
L L ++ + + I L L + IT+ L + L +L N
Sbjct: 44 LTSLDCHNSSITD--MTGIEKLTGLTKLICTSN----NITTLDLSQNTNLTYLACDSNKL 97
Query: 60 RGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQN 119
++ +T L +L N+L+ L + + L Y+ LT+ + +
Sbjct: 98 T-----NLDVTPLTKLTYLNCDTNKLTKL----DVSQNPLLTYLNCARNTLTEID--VSH 146
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
L LD N+ L L L+ S N +T D + L
Sbjct: 147 NTQLTELDCHLNKKI----TKLDVTPQTQLTTLDCSFNKITELD------VSQNKLLNRL 196
Query: 180 DLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 238
+ +NN+ L + + +L S+N LT EI + L L S N L+ L
Sbjct: 197 NCDTNNITK-LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVST 252
Query: 239 LGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWL 298
L L+ L + I L + ++L + + +
Sbjct: 253 LSK----LTTLHCIQTD-LLEID------------LTHNTQLIYFQAEGCRKIKELD--V 293
Query: 299 GTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIV 358
L +L ++ + +DLS N + L
Sbjct: 294 THNTQLYLLDCQAA----------------GITELDLSQNPKLVYL-------------- 323
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
L+N + +++ L+ L+ N +Q S +G +P L + + +
Sbjct: 324 -----YLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQT 373
Query: 419 SGQIPQ-----QLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSN 463
+ L + + N + G + NT N
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWEN 423
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 60/374 (16%), Positives = 101/374 (27%), Gaps = 59/374 (15%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNR 132
N + + S L + + ++T + L L + N
Sbjct: 18 DNFASEVAAAFEMQATD-TISEEQLATLTSLDCHNSSITDMTGIEKLT-GLTKLICTSNN 75
Query: 133 IQGKVPKWLLDP-NMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLP 191
I LD NL L N LT D L + +N L
Sbjct: 76 ITT------LDLSQNTNLTYLACDSNKLTNLD------VTPLTKLTYLNCDTNKLTKLDV 123
Query: 192 VPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDL 251
P + + N+LT EI + + L L N L +L+ LD
Sbjct: 124 SQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDC 177
Query: 252 QGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRS 311
N T + + L L N I+ L L L S
Sbjct: 178 SFNKI------TEL-------DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSS 221
Query: 312 NIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD 371
N I ++L D S N + L + + T +
Sbjct: 222 NKLTEI-----DVTPLTQLTYFDCSVN-PLTELDVSTL--------SKLTTLHCIQTDLL 267
Query: 372 SVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTF 431
+ + + L + + + + L LD + ++ L +
Sbjct: 268 EI---DLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPK 319
Query: 432 LEFFNVSDNHLTGL 445
L + +++ LT L
Sbjct: 320 LVYLYLNNTELTEL 333
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 46/310 (14%), Positives = 86/310 (27%), Gaps = 52/310 (16%)
Query: 137 VPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPG 196
W D N + A + L + D ++++ +
Sbjct: 11 FNDWFPDDNFASEVAAAFEMQATDTISE------EQLATLTSLDCHNSSITDMTGIEKLT 64
Query: 197 TIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNN 255
+ L ++N++T + + L L N L+ L L L+ L+ N
Sbjct: 65 GLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLTNLDVTPLTK----LTYLNCDTNK 117
Query: 256 FFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFY 315
+ + L +L N +++ + L L N
Sbjct: 118 L-TKLDVS------------QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNK-- 159
Query: 316 GIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIP 375
++L +D S N I L + + N+ +
Sbjct: 160 --KITKLDVTPQTQLTTLDCSFN-KITELDVSQN--------KLLNRLNCDTNNITKL-- 206
Query: 376 ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFF 435
+ L L+ +N L I + L L D S N + L +LT L
Sbjct: 207 -DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL--- 259
Query: 436 NVSDNHLTGL 445
+ L +
Sbjct: 260 HCIQTDLLEI 269
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 4e-16
Identities = 46/228 (20%), Positives = 66/228 (28%), Gaps = 30/228 (13%)
Query: 203 SNNSLTGEIPSWICNLNI--LESLVLSHNNLSGL---LPQCLGNSSDELSVLDLQGNNFF 257
N +TG P + L L L + + + L + L VL + +
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162
Query: 258 GTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSW----LGTLPNLNVLILRSNI 313
L L L +N P L VL LR+
Sbjct: 163 NFSCEQVR----------VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212
Query: 314 FYGIIKE-PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS 372
+L+ +DLS+N S + + +N LS
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN-----LSFTGLKQ 267
Query: 373 VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420
V A L VL+L N L PS LP + +L L N F
Sbjct: 268 VPKGLPAKL---SVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 5e-16
Identities = 48/248 (19%), Positives = 79/248 (31%), Gaps = 19/248 (7%)
Query: 203 SNNSLTGEIPSW---ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259
+ I + ++ L+ L L + ++G P L ++ + L N
Sbjct: 76 RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG-PDLNILNLRNVSWA 134
Query: 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ ++ E + L+ L + + + P L+ L L N G
Sbjct: 135 TRDAWLAELQQWLKP----GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190
Query: 320 EPRTDC--GFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPAS 377
C F L+++ L N A V G+ LS+NS A
Sbjct: 191 LISALCPLKFPTLQVLALRNAGM---ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247
Query: 378 I-ANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFN 436
L LNL L+ +P L L LDLS N+ P EL + +
Sbjct: 248 SCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPSPD-ELPQVGNLS 302
Query: 437 VSDNHLTG 444
+ N
Sbjct: 303 LKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 1e-14
Identities = 57/244 (23%), Positives = 83/244 (34%), Gaps = 33/244 (13%)
Query: 221 LESLVLSHNNLSGLLPQCLGNSSD--ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCS 278
L+ L + + + L L L+ GT P P
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP--------PPLLEATGP 121
Query: 279 KLEFLGLGNNQISDTFPSWLGTL-----PNLNVLILRSNIFYGIIKEPRTDCGFSKLRII 333
L L L N + T +WL L P L VL + F L +
Sbjct: 122 DLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFS--CEQVRVFPALSTL 178
Query: 334 DLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS---VIPASIANLKGLQVLNLQ 390
DLS+N +G L S LC + + L N ++ V A A LQ L+L
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQV--LALRNAGMETPSGVCSALAAARVQLQGLDLS 236
Query: 391 NNSLQGHIPSCLGNLP-NLESLDLSNNKFS---GQIPQQLVELTFLEFFNVSDNHLTGLI 446
+NSL+ + + P L SL+LS +P +L L ++S N L
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL------DLSYNRLDRNP 290
Query: 447 PPGK 450
P +
Sbjct: 291 SPDE 294
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 2e-14
Identities = 55/269 (20%), Positives = 85/269 (31%), Gaps = 21/269 (7%)
Query: 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLR-----NLSQLFFLDLAKN 57
L+ + DL ++SL + +S L L L
Sbjct: 46 EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105
Query: 58 SYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATS---NTTSQKLKYIGLRSCNLTKFP 114
GT +L + +L L L + + LK + + + F
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165
Query: 115 -NFLQNQYHLLVLDLSDNRIQGKVPKW--LLDPNMQNLNALNISHNFLTGFDQHLVVLPA 171
++ L LDLSDN G+ L L L + + + L A
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225
Query: 172 NKGDLLTFDLSSNNLQGPLPVPP---PGTIHYL-ASNNSLTGEIPSWICNLNILESLVLS 227
+ L DLS N+L+ P P ++ L S L ++P L L LS
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK--GLPAKLSVLDLS 282
Query: 228 HNNLSGLLPQCLGNSSDELSVLDLQGNNF 256
+N L P + L L+GN F
Sbjct: 283 YNRLDR-NPSPDELPQ--VGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 9e-09
Identities = 41/201 (20%), Positives = 68/201 (33%), Gaps = 22/201 (10%)
Query: 1 LQFLYLRLNNFS----GDLLGSIGNL--RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDL 54
L L N S L + L+ + IA+ + +R L LDL
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180
Query: 55 AKNSYRGTIKLD--VLLTSWKNLEFLALSLNRLSVLTKATSNTTS--QKLKYIGLRSCNL 110
+ N G L + + L+ LAL + + S + +L+ + L +L
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240
Query: 111 TKFPNFLQNQY--HLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVV 168
+ L L+LS ++ +VPK L L+ L++S+N L
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP----AKLSVLDLSYNRLDRNPSPDE- 294
Query: 169 LPANKGDLLTFDLSSNNLQGP 189
LP + L N
Sbjct: 295 LPQ----VGNLSLKGNPFLDS 311
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 1e-13
Identities = 67/420 (15%), Positives = 120/420 (28%), Gaps = 69/420 (16%)
Query: 126 LDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNN 185
I+ + D N+ +T V + ++++
Sbjct: 4 TITVSTPIK----QIFPDDAFAETIKDNLKKKSVTD-----AVTQNELNSIDQIIANNSD 54
Query: 186 LQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDE 245
++ S+ G I L + L L+ N L+ + P L N
Sbjct: 55 IK------------------SVQG-----IQYLPNVTKLFLNGNKLTDIKP--LTNLK-N 88
Query: 246 LSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305
L L L N IK+ + SL + KL+ L L +N ISD + L LP L
Sbjct: 89 LGWLFLDENK---------IKD--LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 134
Query: 306 VLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIIL 365
L L +N I + +KL + L +N I + + + L
Sbjct: 135 SLYLGNNK----ITDITVLSRLTKLDTLSLEDN-QISDIV-------PLAGLTKLQNLYL 182
Query: 366 SNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG----Q 421
S N + +A LK L VL L + + NL ++ ++
Sbjct: 183 SKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240
Query: 422 IPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGCESDVAP 481
+ N ++ + + + + D
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTV 300
Query: 482 ANEDHTKGSEESLFSGTSDWKIILIGYAGGLVAGLVVGFNFSTGIIGWILEKLGTQQKAT 541
G+ + + + G+ +NF+T + L KA
Sbjct: 301 IKTKVEAGTRITAPKPPTKQGYVFKGWY--TEKNGGHEWNFNTDYMSGNDFTLYAVFKAE 358
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 1e-10
Identities = 54/315 (17%), Positives = 101/315 (32%), Gaps = 55/315 (17%)
Query: 69 LTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDL 128
++ L ++ + I + ++ +Q ++ L L
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQG-IQYLPNVTKLFL 72
Query: 129 SDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQG 188
+ N++ P N++NL L + N + L L L + L N +
Sbjct: 73 NGNKLTDIKP----LTNLKNLGWLFLDENKIKDLS-SLKDLKK----LKSLSLEHNGI-- 121
Query: 189 PLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSV 248
+ + G + +L LESL L +N ++ + L + +L
Sbjct: 122 ----------------SDING-----LVHLPQLESLYLGNNKITDITV--LSRLT-KLDT 157
Query: 249 LDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLI 308
L L+ N I + I L +KL+ L L N ISD L L NL+VL
Sbjct: 158 LSLEDNQ---------ISD--IV-PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLE 203
Query: 309 LRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNN 368
L S +++ + ++ + + + + +
Sbjct: 204 LFSQECLNKPINHQSN--LVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261
Query: 369 SFDSVIPASIANLKG 383
SF P +I K
Sbjct: 262 SFIFYQPVTIGKAKA 276
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 7e-10
Identities = 50/323 (15%), Positives = 103/323 (31%), Gaps = 62/323 (19%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100
++ +L K S + + L +++ + + + + + +
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVTQNEL----NSIDQIIANNSDIKSVQGIQYLP---NV 67
Query: 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160
+ L LT L N +L L L +N+I+ L +++ L +L++ HN ++
Sbjct: 68 TKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSS---LK-DLKKLKSLSLEHNGIS 122
Query: 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNI 220
+ LV LP L + L +N + + L
Sbjct: 123 DIN-GLVHLP----QLESLYLGNNKITDITV-----------------------LSRLTK 154
Query: 221 LESLVLSHNNLSGLLP-QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSK 279
L++L L N +S ++P L L L L N+ I + R+L
Sbjct: 155 LDTLSLEDNQISDIVPLAGLTK----LQNLYLSKNH----ISDL--------RALAGLKN 198
Query: 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339
L+ L L + + + + L N + + P ++ +
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDG----SLVTPEIISDDGDYEKPNVKWH- 253
Query: 340 FIGTLPLKSFLCWNAMKIVNTTG 362
SF+ + + I
Sbjct: 254 LPEFTNEVSFIFYQPVTIGKAKA 276
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 16/199 (8%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L+ L L N S + + +L LE++++ ++ + L L++L L L N
Sbjct: 111 LKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ-- 164
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLT-KFPNFLQN 119
I V L L+ L LS N +S L L + L S K N N
Sbjct: 165 --ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLK---NLDVLELFSQECLNKPINHQSN 219
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
+ +D + + + + N+ + ++ +
Sbjct: 220 LVVPNTVKNTDG----SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAK 275
Query: 180 DLSSNNLQGPLPVPPPGTI 198
+ PL +
Sbjct: 276 ARFHGRVTQPLKEVYTVSY 294
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 86/479 (17%), Positives = 144/479 (30%), Gaps = 99/479 (20%)
Query: 23 RSLEAIHIAKCNVSGQ-ITSSLRNLSQLFFLDLAKN--SYRGTIKLDVLLTSWKNLEFLA 79
++++ I +S L L Q + L + + L L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 80 LSLNRLS-----VLTKATSNTTSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLS 129
L N L + + S K++ + L++C LT + L+ L L LS
Sbjct: 63 LRSNELGDVGVHCVLQGLQTP-SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 130 DNRIQGKVPKWL---LDPNMQNLNALNISHNFLTGFD-QHLV-VLPANKGDLLTFDLSSN 184
DN + + L L L L + + L+ + L VL A +S+N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD-FKELTVSNN 180
Query: 185 NLQ-------GPLPVPPPGTIHYLA-SNNSLTGE----IPSWICNLNILESLVLSHNNLS 232
++ P + L + +T + + + + L L L N L
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240
Query: 233 G----LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN 288
L L + S L L + T + R L L+ L L N
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGI------TAKGCGDLCRVLRAKESLKELSLAGN 294
Query: 289 QISDTFPSWLG-----TLPNLNVLILRSNIFYGIIKEPRTDCGF----------SKLRII 333
++ D L L L ++S F T L +
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSF--------TAACCSHFSSVLAQNRFLLEL 346
Query: 334 DLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNS 393
+SNN + ++ + + L+VL L +
Sbjct: 347 QISNN-RLEDAGVREL--CQGLGQPGSV----------------------LRVLWLADCD 381
Query: 394 LQ----GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVEL-----TFLEFFNVSDNHLT 443
+ + + L +L LDLSNN QLVE LE + D + +
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 64/345 (18%), Positives = 111/345 (32%), Gaps = 66/345 (19%)
Query: 1 LQFLYLRLNNFSGDLLGSIG----NLRSLEAIHIAKCNVSGQITSSL-----RNLSQLFF 51
L+ L L + S + + + ++ +++ L + QL
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203
Query: 52 LDLAKN--SYRGTIKLDVLLTSWKNLEFLALSLNRLS-----VLTKATSNTTSQKLKYIG 104
L L + L ++ S +L LAL N+L L + S +L+ +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP-SSRLRTLW 262
Query: 105 LRSCNLT-----KFPNFLQNQYHLLVLDLSDNRIQGKVPKWL---LDPNMQNLNALNISH 156
+ C +T L+ + L L L+ N + + + L L L +L +
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322
Query: 157 NFLTGFD-QHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIH---YLASNNSLTGEIP 212
T H + A LL +S+N L+ G L S+
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA------GVRELCQGLGQPGSV----- 371
Query: 213 SWICNLNILESLVLSHNNLSGLLPQCLGN---SSDELSVLDLQGNNF--FGTIPNTFIKE 267
L L L+ ++S L ++ L LDL N G
Sbjct: 372 --------LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI-------- 415
Query: 268 RRIPRSL-INCSKLEFLGLGNNQISDTFPSWLGTL----PNLNVL 307
++ S+ LE L L + S+ L L P+L V+
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 36/241 (14%), Positives = 74/241 (30%), Gaps = 17/241 (7%)
Query: 178 TFDLSSNNLQG-PLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236
F + + P +P L LE + +S N++ ++
Sbjct: 13 VFLCQESKVTEIPSDLPRNAIELRF-VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71
Query: 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS 296
+ ++ +L + ++ N I P + N L++L + N I
Sbjct: 72 ADVFSNLPKLHEIRIEKANNLLYIN---------PEAFQNLPNLQYLLISNTGIKHLPDV 122
Query: 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMK 356
+L ++ NI I+ + I+ L+ N I + +F
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQ--- 178
Query: 357 IVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416
+ NN+ + + G +L++ + L NL L + N
Sbjct: 179 --LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236
Query: 417 K 417
K
Sbjct: 237 K 237
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 38/318 (11%), Positives = 77/318 (24%), Gaps = 39/318 (12%)
Query: 100 LKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISH-N 157
+ L L +++S N + + + N+ L+ + I N
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-NLPKLHEIRIEKAN 90
Query: 158 FLTGF-DQHLVVLPANKGDLLTFDLSSNNLQ----GPLPVPPPGTIHYLASNNSLTGEIP 212
L + LP L +S+ ++ + + N ++
Sbjct: 91 NLLYINPEAFQNLPN----LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146
Query: 213 SWICNL-NILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIP 271
+ L L L+ N + + + L L+L NN +P
Sbjct: 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ--LDELNLSDNNNLEELP---------N 195
Query: 272 RSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLR 331
S L + +I L L L + ++ L
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE------KLVALM 249
Query: 332 IIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQN 391
L+ S C A + + N Q +L
Sbjct: 250 EASLTYP---------SHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAE 300
Query: 392 NSLQGHIPSCLGNLPNLE 409
++ + +
Sbjct: 301 DNESSYSRGFDMTYTEFD 318
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS-CLGNLPNLESLDLSN-N 416
N + + + + L+ + + N + I + NLP L + + N
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 417 KFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
P+ L L++ +S+ + +P
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDV 122
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 14/173 (8%)
Query: 1 LQFLYLRLNNFSGDL-LGSIGNLRSLEAIHIAKCNVSGQITS----SLRNLSQLFFLDLA 55
L+ + + N+ + NL L I I K N + + +NL L +L ++
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN---NLLYINPEAFQNLPNLQYLLIS 112
Query: 56 KNSYRGTIKLDVLLTSWKNLEFLALSLN-RLSVLTKATSNTTSQKLKYIGLRSCNLTKFP 114
DV L + N + + + + S + + L + +
Sbjct: 113 NT--GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170
Query: 115 NFLQNQYHLLVLDLSD-NRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHL 166
N N L L+LSD N ++ ++P + L+IS + +
Sbjct: 171 NSAFNGTQLDELNLSDNNNLE-ELPNDVFH-GASGPVILDISRTRIHSLPSYG 221
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 15/170 (8%)
Query: 276 NCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDL 335
+ L ++ L N ++D + N+ L + + G S L + +
Sbjct: 42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH----ATNYNPISGLSNLERLRI 95
Query: 336 SNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ 395
+ + + + + + T + +S+++ D I I L + ++L N
Sbjct: 96 MGK-DVTSDKIPNLS-----GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149
Query: 396 GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445
I L LP L+SL++ + + + L + G
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 10/126 (7%)
Query: 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLK 382
T+ + L I L+N ++ N + ++N + P I+ L
Sbjct: 39 TEAQMNSLTYITLANINVTDLTGIEYA--------HNIKDLTINNIHATNYNP--ISGLS 88
Query: 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442
L+ L + + L L +L LD+S++ I ++ L + ++S N
Sbjct: 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148
Query: 443 TGLIPP 448
I P
Sbjct: 149 ITDIMP 154
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 7e-07
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420
T I L+N + + I ++ L + N + + L NLE L + +
Sbjct: 47 TYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTS 102
Query: 421 QIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
L LT L ++S + I
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTK 131
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 7/135 (5%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
++ L + + + I L +LE + I +V+ +L L+ L LD++ +
Sbjct: 68 IKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS--A 123
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
+ + + + + LS N +T T +LK + ++ + + +++
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGA--ITDIMPLKTLPELKSLNIQFDGVHDYRG-IEDF 180
Query: 121 YHLLVLDLSDNRIQG 135
L L I G
Sbjct: 181 PKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSL 274
I + ++ L +++ + + P + S L L + G + + +IP +L
Sbjct: 62 IEYAHNIKDLTINNIHATNYNP--ISGLS-NLERLRIMGKD---------VTSDKIP-NL 108
Query: 275 INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334
+ L L + ++ D+ + + TLP +N + L N G I + +L+ ++
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN---GAITDIMPLKTLPELKSLN 165
Query: 335 LSNN 338
+ +
Sbjct: 166 IQFD 169
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 26/215 (12%), Positives = 72/215 (33%), Gaps = 40/215 (18%)
Query: 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80
++ + + + + IT + ++ L ++ LA + ++ N++ L +
Sbjct: 21 TFKAYLNGLLGQ-SSTANITEA--QMNSLTYITLANINVTDLTGIEYA----HNIKDLTI 73
Query: 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLT-KFPNFLQNQYHLLVLDLSDNRIQGKVPK 139
+ + + + L+ + + ++T L L +LD+S + +
Sbjct: 74 NNIHATNYNPISGLS---NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
Query: 140 WLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIH 199
+ + +N++++S+N L LP L + ++ + +
Sbjct: 131 KIN--TLPKVNSIDLSYNGAITDIMPLKTLPE----LKSLNIQFDGV------------- 171
Query: 200 YLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234
+ G I + L L + G
Sbjct: 172 -----HDYRG-----IEDFPKLNQLYAFSQTIGGK 196
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 7e-12
Identities = 45/214 (21%), Positives = 78/214 (36%), Gaps = 15/214 (7%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
S N L + L+ L LS + + S LS L L GN ++
Sbjct: 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLA- 92
Query: 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322
+ S L+ L ++ +G L L L + N+ K P
Sbjct: 93 --------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPE 143
Query: 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLK 382
+ L +DLS+N I ++ + M ++N + + LS N + + P + ++
Sbjct: 144 YFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS-LDLSLNPMNFIQPGAFKEIR 201
Query: 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416
L+ L L N L+ L +L+ + L N
Sbjct: 202 -LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 326 GFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQ 385
F +L+++DLS I T+ ++ + + + +IL+ N S+ + + L LQ
Sbjct: 50 SFPELQVLDLSRCE-IQTIEDGAY-----QSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 386 VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF-SGQIPQQLVELTFLEFFNVSDNHLTG 444
L +L +G+L L+ L++++N S ++P+ LT LE ++S N +
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 445 LIPPGKQFATFDN 457
I
Sbjct: 164 -IYCT----DLRV 171
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 48/223 (21%), Positives = 76/223 (34%), Gaps = 33/223 (14%)
Query: 38 QITS----SLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATS 93
+ S + +L LDL++ + TI+ S +L L L+ N + L
Sbjct: 39 PLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGA-YQSLSHLSTLILTGNPIQSLALGAF 96
Query: 94 NTTSQKLKYIGLRSCNLTKFPNFL-QNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNAL 152
+ S L+ + NL NF + L L+++ N IQ N+ NL L
Sbjct: 97 SGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHL 154
Query: 153 NISHNFLTGF-DQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEI 211
++S N + L VL L+ DLS N + PG +
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN----FIQPGAFKEIR--------- 201
Query: 212 PSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGN 254
L+ L L N L + + L + L N
Sbjct: 202 ---------LKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 41/198 (20%), Positives = 64/198 (32%), Gaps = 23/198 (11%)
Query: 122 HLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDL 181
L VLDLS IQ + ++ +L+ L ++ N + + L
Sbjct: 53 ELQVLDLSRCEIQ-TIEDGAYQ-SLSHLSTLILTGNPIQSLALG---AFSGLSSLQKLVA 107
Query: 182 SSNNLQ----GPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237
NL P+ +A N + ++P + NL LE L LS N + +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 238 C---LGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294
L LDL N I +L+ L L NQ+
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPM-----------NFIQPGAFKEIRLKELALDTNQLKSVP 216
Query: 295 PSWLGTLPNLNVLILRSN 312
L +L + L +N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 64/306 (20%), Positives = 105/306 (34%), Gaps = 64/306 (20%)
Query: 143 DPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA 202
DP + N + + +T V A+ + T +
Sbjct: 15 DPALANAIKIAAGKSNVTD-----TVTQADLDGITTLSAFGTGV---------------- 53
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
++ G + LN L L L N ++ L P L N + +++ L+L GN
Sbjct: 54 --TTIEG-----VQYLNNLIGLELKDNQITDLAP--LKNLT-KITELELSGNPL------ 97
Query: 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322
+ ++ ++ L L + QI+D P L L NL VL L N I
Sbjct: 98 ------KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN----QITNIS 145
Query: 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLK 382
G + L+ + + N PL + T + +N + P +A+L
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTPLANL--------SKLTTLKADDNKISDISP--LASLP 195
Query: 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442
L ++L+NN + P L N NL + L+N + Q L NV
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP---NVVKGPS 250
Query: 443 TGLIPP 448
I P
Sbjct: 251 GAPIAP 256
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 55/283 (19%), Positives = 95/283 (33%), Gaps = 38/283 (13%)
Query: 69 LTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDL 128
+ N +A + + T + + + +T +Q +L+ L+L
Sbjct: 15 DPALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLEL 70
Query: 129 SDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQG 188
DN+I P N+ + L +S N L A + T DL+S +
Sbjct: 71 KDNQITDLAP----LKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLDLTSTQITD 121
Query: 189 PLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELS 247
P+ + L N +T I + L L+ L + + +S L P L N S +L+
Sbjct: 122 VTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLS-KLT 176
Query: 248 VLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVL 307
L N I L + L + L NNQISD S L NL ++
Sbjct: 177 TLKADDNK-ISDISP-----------LASLPNLIEVHLKNNQISDV--SPLANTSNLFIV 222
Query: 308 ILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFL 350
L + + L + ++ + +
Sbjct: 223 TLTNQTITNQ-----PVFYNNNLVVPNVVKGPSGAPIAPATIS 260
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 36/245 (14%), Positives = 96/245 (39%), Gaps = 28/245 (11%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+ L + + + L +L + + ++ + L+NL+++ L+L+ N
Sbjct: 43 ITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNP-- 96
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
+K + ++++ L L+ +++ +T + L+ + L +T L
Sbjct: 97 --LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS---NLQVLYLDLNQITNISP-LAGL 150
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDP--NMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178
+L L + + ++ L P N+ L L N ++ A+ +L+
Sbjct: 151 TNLQYLSIGNAQVSD------LTPLANLSKLTTLKADDNKISDISP-----LASLPNLIE 199
Query: 179 FDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237
L +N + P+ + + +N ++T + N N++ V+ + + + P
Sbjct: 200 VHLKNNQISDVSPLANTSNLFIVTLTNQTITNQ--PVFYNNNLVVPNVVKGPSGAPIAPA 257
Query: 238 CLGNS 242
+ ++
Sbjct: 258 TISDN 262
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 30/185 (16%), Positives = 65/185 (35%), Gaps = 21/185 (11%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
++ L L + + + L +L+ +++ ++ S L L+ L +L +
Sbjct: 109 IKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS 164
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
L L L L N++S ++ S L + L++ ++ L N
Sbjct: 165 DLTPLANL----SKLTTLKADDNKISDISPLASLP---NLIEVHLKNNQISDVSP-LANT 216
Query: 121 YHLLVLDLSDNRIQG---------KVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPA 171
+L ++ L++ I VP + P+ + IS N L +
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276
Query: 172 NKGDL 176
++
Sbjct: 277 FINNV 281
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 50/242 (20%), Positives = 82/242 (33%), Gaps = 37/242 (15%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP-QCLGNSSDELSVLDLQGNNFFGTIP 261
S+T + LN ++ ++ +++++ + Q L N ++ L L GN
Sbjct: 32 KKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN----VTKLFLNGNKL----- 80
Query: 262 NTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP 321
I L N L +L L N++ D L L L L L N I +
Sbjct: 81 ------TDIK-PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG----ISDI 127
Query: 322 RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANL 381
+L + L NN L + L +N ++P +A L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRL--------TKLDTLSLEDNQISDIVP--LAGL 177
Query: 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNH 441
LQ L L N + L L NL+ L+L + + + L +D
Sbjct: 178 TKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235
Query: 442 LT 443
L
Sbjct: 236 LV 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 62/308 (20%), Positives = 117/308 (37%), Gaps = 42/308 (13%)
Query: 122 HLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDL 181
+ +L + V + + +++ + +++ + Q + LP ++ L
Sbjct: 25 ETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSV-QGIQYLP----NVTKLFL 75
Query: 182 SSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240
+ N L P+ + +L N + ++ S + +L L+SL L HN +S + L
Sbjct: 76 NGNKLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDING--LV 131
Query: 241 NSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT 300
+ +L L L N I + L +KL+ L L +NQISD P L
Sbjct: 132 HLP-QLESLYLGNNK---------ITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAG 176
Query: 301 LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360
L L L L N I + R G L +++L + K + + + NT
Sbjct: 177 LTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQ----ECLNKPINHQSNLVVPNT 228
Query: 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420
+ N V P I++ + N++ + L ++ + +F G
Sbjct: 229 ----VKNTDGSLVTPEIISDDGDYEKPNVKWH-LPEFTNEVSFIFYQPVTIGKAKARFHG 283
Query: 421 QIPQQLVE 428
++ Q L E
Sbjct: 284 RVTQPLKE 291
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-08
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 20/174 (11%)
Query: 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRII 333
++ L ++D L +++ +I ++ IK + + +
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----DIKSVQGIQYLPNVTKL 73
Query: 334 DLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNS 393
L+ N PL + N + L N + + +LK L+ L+L++N
Sbjct: 74 FLNGNKLTDIKPLANL--------KNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG 123
Query: 394 LQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
+ I L +LP LESL L NNK + L LT L+ ++ DN ++ ++P
Sbjct: 124 IS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP 173
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 53/297 (17%), Positives = 105/297 (35%), Gaps = 41/297 (13%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100
S ++ +L K S + + L +++ + + + + + +
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQNEL----NSIDQIIANNSDIKSVQGIQYLP---NV 70
Query: 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160
+ L LT L N +L L L +N+++ +++ L +L++ HN ++
Sbjct: 71 TKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSLEHNGIS 125
Query: 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLN 219
+ LV LP L + L +N + + + L +N ++ +I + L
Sbjct: 126 DIN-GLVHLPQ----LESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLT 178
Query: 220 ILESLVLSHNNLSGLLP-QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCS 278
L++L LS N++S L L N L VL+L P +P ++ N
Sbjct: 179 KLQNLYLSKNHISDLRALAGLKN----LDVLELFSQECL-NKPINHQSNLVVPNTVKN-- 231
Query: 279 KLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSN-------IFYGIIKEPRTDCGFS 328
+ ++ S G NV IFY + + F
Sbjct: 232 ------TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 282
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 39/234 (16%), Positives = 80/234 (34%), Gaps = 26/234 (11%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L+ + + + L S++ I ++ + ++ L + L L N
Sbjct: 26 TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 81
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
L L KNL +L L N++ L+ KLK + L ++ L +
Sbjct: 82 DIKPLANL----KNLGWLFLDENKVKDLSSLKDLK---KLKSLSLEHNGISDING-LVHL 133
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDP--NMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178
L L L +N+I + + L+ L++ N ++ A L
Sbjct: 134 PQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDNQISDIVPL-----AGLTKLQN 182
Query: 179 FDLSSNNLQGPLPVPPPGTIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNL 231
LS N++ + + L + + + NL + ++ + +L
Sbjct: 183 LYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 14/130 (10%)
Query: 318 IKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPAS 377
IK+ +D F++ +L + + II +N+ SV
Sbjct: 14 IKQIFSDDAFAETIKDNLKKKSVTDAVTQNEL--------NSIDQIIANNSDIKSVQG-- 63
Query: 378 IANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437
I L + L L N L I L NL NL L L NK + L +L L+ ++
Sbjct: 64 IQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSL 119
Query: 438 SDNHLTGLIP 447
N ++ +
Sbjct: 120 EHNGISDING 129
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 3e-11
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 31/225 (13%)
Query: 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295
P C + ++ N +P +P+ L L N +
Sbjct: 2 PICEVSKVASHLEVNCDKRNL-TALP------PDLPKDT------TILHLSENLLYTFSL 48
Query: 296 SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355
+ L L L L + + + D L +DLS+N + +LPL
Sbjct: 49 ATLMPYTRLTQLNLDRAE----LTKLQVDGTLPVLGTLDLSHN-QLQSLPL-LG-----Q 97
Query: 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415
+ T + +S N S+ ++ L LQ L L+ N L+ P L P LE L L+N
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 416 NKFSGQIPQQL-VELTFLEFFNVSDNHLTGLIPPGKQFATFDNTS 459
N + ++P L L L+ + +N L IP G F +
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKG----FFGSHL 196
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-10
Identities = 47/240 (19%), Positives = 68/240 (28%), Gaps = 53/240 (22%)
Query: 180 DLSSNNLQGPLPVPP--PGTIHYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236
+ NL +PP P L S N L + + L L L L+ L
Sbjct: 16 NCDKRNLTA---LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS 296
+ L LDL N + +P L L + N+++
Sbjct: 73 ---DGTLPVLGTLDLSHNQL-----------QSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMK 356
L L L L L+ N + L + T
Sbjct: 119 ALRGLGELQELYLKGN------------------ELKTLPPGLLTPT------------- 147
Query: 357 IVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416
+ L+NN+ + + L+ L L LQ NSL IP L L N
Sbjct: 148 -PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 42/185 (22%), Positives = 60/185 (32%), Gaps = 39/185 (21%)
Query: 74 NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRI 133
L L L L+ L + L + L L P Q L VLD+S NR+
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 134 QGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF----DLSSNNLQGP 189
+P L + L L + N L LP L++NNL
Sbjct: 113 T-SLPLGALR-GLGELQELYLKGN-------ELKTLPPGLLTPTPKLEKLSLANNNLT-- 161
Query: 190 LPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVL 249
P G ++ L L++L+L N+L + G+ L
Sbjct: 162 --ELPAGLLN-----------------GLENLDTLLLQENSLYTIPKGFFGSHL--LPFA 200
Query: 250 DLQGN 254
L GN
Sbjct: 201 FLHGN 205
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 38/247 (15%), Positives = 75/247 (30%), Gaps = 49/247 (19%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
+ + IPS + ++L L +L + N +S + + + +
Sbjct: 19 TCKDIQ-RIPSLPPST---QTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLE- 72
Query: 263 TFIKERRIPRSLINCSKLEFLGLGNNQ-ISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP 321
S N SK+ + + N + ++ P L LP L L + +
Sbjct: 73 --------SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT--------- 115
Query: 322 RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANL 381
+ + + + + L I N S+ + L
Sbjct: 116 ---------GLKMFPDLTKVYSTDIFFILE------------ITDNPYMTSIPVNAFQGL 154
Query: 382 -KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVE--LTFLEFFNVS 438
L L NN + N L+++ L+ NK+ I + + +VS
Sbjct: 155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213
Query: 439 DNHLTGL 445
+T L
Sbjct: 214 QTSVTAL 220
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 43/254 (16%), Positives = 90/254 (35%), Gaps = 57/254 (22%)
Query: 106 RSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQH 165
++ + P+ + L L + ++ +P N+ N++ + +S +
Sbjct: 19 TCKDIQRIPSLPPS---TQTLKLIETHLR-TIPSHAFS-NLPNISRIYVSID------VT 67
Query: 166 LVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLV 225
L L ++ +F + + + I + + +LT P + L +L+ L
Sbjct: 68 LQQLESH-----SFY-NLSKVT---------HI-EIRNTRNLTYIDPDALKELPLLKFLG 111
Query: 226 LSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIP-NTFIKERRIPRSLINCSKLEFLG 284
+ + L S+D +L++ N + +IP N F + L N + L
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF-------QGLCN--ETLTLK 162
Query: 285 LGNNQISDTFPSWLGTLPNLNVLILRSN---------IFYGIIKEPRTDCGFSKLRIIDL 335
L NN + + + L+ + L N F G+ S ++D+
Sbjct: 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY---------SGPSLLDV 212
Query: 336 SNNIFIGTLPLKSF 349
S + LP K
Sbjct: 213 SQT-SVTALPSKGL 225
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 24/152 (15%), Positives = 40/152 (26%), Gaps = 35/152 (23%)
Query: 301 LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360
P+ L L I + I +S ++ + L SF
Sbjct: 30 PPSTQTLKLIETHLRTI--PSHAFSNLPNISRIYVSIDVTLQQLESHSF----------- 76
Query: 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS-CLGNLPNLESLDLSNNKFS 419
NL + + ++N +I L LP L+ L + N
Sbjct: 77 ------------------YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118
Query: 420 GQIPQQ--LVELTFLEFFNVSDNHLTGLIPPG 449
P + ++DN IP
Sbjct: 119 -MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 27/205 (13%), Positives = 64/205 (31%), Gaps = 30/205 (14%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNR-LSVLTKAT-SNTTSQ 98
+ NL + + ++ + ++ + + + + R L+ +
Sbjct: 49 HAFSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDALKELP-- 105
Query: 99 KLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISH 156
LK++G+ + L FP+ + + +L+++DN +P L + +
Sbjct: 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165
Query: 157 NFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWIC 216
N T + L L+ N L V + S
Sbjct: 166 NGFTSVQGYAFNGTK----LDAVYLNKNKY---LTVIDKDAFGGVYSG------------ 206
Query: 217 NLNILESLVLSHNNLSGLLPQCLGN 241
L +S +++ L + L +
Sbjct: 207 ----PSLLDVSQTSVTALPSKGLEH 227
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 9/158 (5%)
Query: 1 LQFLYLRLNNFSGDL-LGSIGNLRSLEAIHIAKCNVSG-QITSSLRNLSQLFFLDLAKNS 58
+ + +R + ++ L L+ + I + + + + F L++ N
Sbjct: 82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141
Query: 59 YRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCN-LTKFPN-- 115
Y +I ++ L L N + + N T KL + L LT
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT--KLDAVYLNKNKYLTVIDKDA 199
Query: 116 FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALN 153
F +LD+S + +P L+ +++ L A N
Sbjct: 200 FGGVYSGPSLLDVSQTSVT-ALPSKGLE-HLKELIARN 235
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 3e-10
Identities = 40/302 (13%), Positives = 83/302 (27%), Gaps = 21/302 (6%)
Query: 157 NFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWIC 216
+ ++ + + ++ P+ + L W
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289
Query: 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276
+ +L + G++ + R
Sbjct: 290 PDGRNRPSHVWLCDLPAASLND--QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347
Query: 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFY-----------GIIKEPRTDC 325
+L L + S L + L L + ++ E T
Sbjct: 348 DEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406
Query: 326 GFSKLRIIDLSNNIFIGTLPLKSFLCW--NAMKIVNTTGIILSNNSFDSVIPASIANLKG 383
FS L+ +D ++ L K L M+ + + L++ + + L
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLL 464
Query: 384 LQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443
+ L+L +N L+ +P L L LE L S+N + + L L+ + +N L
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ 521
Query: 444 GL 445
Sbjct: 522 QS 523
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 7e-09
Identities = 59/420 (14%), Positives = 100/420 (23%), Gaps = 105/420 (25%)
Query: 3 FLYLR--LNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+ Y R L + ++ EA + + S + L + +R
Sbjct: 229 WFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWR 288
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
+ W A ++L T T S K L +
Sbjct: 289 TPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATD 348
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
L +LS + +L +++ L +++L LL
Sbjct: 349 EQLFRCELSVEKS------TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 402
Query: 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240
+ V P + + E + L L+H +L+
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-------- 454
Query: 241 NSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT 300
+ + L + L L +N++ P L
Sbjct: 455 ------------------VLCH-----------LEQLLLVTHLDLSHNRLR-ALPPALAA 484
Query: 301 LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360
L L VL N + ++
Sbjct: 485 LRCLEVLQASDN------------------ALENVDG----------------------- 503
Query: 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGH-IPSCLGNLPNLESLDLSNNKFS 419
+ANL LQ L L NN LQ L + P L L+L N
Sbjct: 504 -----------------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 7e-08
Identities = 50/272 (18%), Positives = 87/272 (31%), Gaps = 56/272 (20%)
Query: 43 LRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKY 102
QLF +L+ + L L S K L L + T + L
Sbjct: 345 SATDEQLFRCELSVEK---STVLQSELESCKEL----QELEPENKWCLLTIILLMRALDP 397
Query: 103 IGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGF 162
+ L F L+ + L D R + + +L ++ L+++H LT
Sbjct: 398 LLYEKETLQYFST-LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL 456
Query: 163 D--QHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNI 220
+ L+++ DLS N L+ +P + L
Sbjct: 457 CHLEQLLLVT-------HLDLSHNRLR----------------------ALPPALAALRC 487
Query: 221 LESLVLSHNNLSGLLP-QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSK 279
LE L S N L + L L L L N +++ + L++C +
Sbjct: 488 LEVLQASDNALENVDGVANLPR----LQELLLCNNR---------LQQSAAIQPLVSCPR 534
Query: 280 LEFLGLGNNQISDTFPSW---LGTLPNLNVLI 308
L L L N + LP+++ ++
Sbjct: 535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 42/218 (19%), Positives = 73/218 (33%), Gaps = 34/218 (15%)
Query: 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSL 274
L L +++ L+ Q + + +N ++ +
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVSQ---KELSGVQNFNGDNSNI-QSLAG-----------M 59
Query: 275 INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334
+ L+ L L +NQISD P L L L L + N + + L +
Sbjct: 60 QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-----NGIPSACLSRLF 112
Query: 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSL 394
L NN T L + N + + NN S++ + L L+VL+L N +
Sbjct: 113 LDNNELRDTDSLI--------HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI 162
Query: 395 QGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFL 432
L L + +DL+ K + + EL
Sbjct: 163 TNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 21/174 (12%)
Query: 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRII 333
+ LG ++D L + ++ I+ F+ L+ +
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN----IQSLAGMQFFTNLKEL 68
Query: 334 DLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNS 393
LS+N PLK + ++ N ++ I + L L L NN
Sbjct: 69 HLSHNQISDLSPLKDL--------TKLEELSVNRNRLKNLNG--IPSAC-LSRLFLDNNE 117
Query: 394 LQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L+ L +L NLE L + NNK + L L+ LE ++ N +T
Sbjct: 118 LRD--TDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG 167
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 53/311 (17%), Positives = 100/311 (32%), Gaps = 63/311 (20%)
Query: 41 SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100
L+ +L K S + L ++ + + L T L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVSQKEL----SGVQNFNGDNSNIQSLAGMQFFT---NL 65
Query: 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160
K + L ++ L++ L L ++ NR++ L L+ L + +N L
Sbjct: 66 KELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNELR 119
Query: 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNI 220
D L+ L +L + +N L S+ + L+
Sbjct: 120 DTD-SLIHLK----NLEILSIRNNKL------------------KSIVM-----LGFLSK 151
Query: 221 LESLVLSHNNLSGLLP-QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSK 279
LE L L N ++ L ++ +DL G P + E I ++ +
Sbjct: 152 LEVLDLHGNEITNTGGLTRLKK----VNWIDLTGQKCV-NEPVKYQPELYITNTVKD--- 203
Query: 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339
IS + S G+ + V ++ + FS+ + + I
Sbjct: 204 -----PDGRWISPYYISNGGSYVDGCV------LWELPVYTDEVSYKFSEYINVGETEAI 252
Query: 340 FIGTL--PLKS 348
F GT+ P+K+
Sbjct: 253 FDGTVTQPIKN 263
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 36/216 (16%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP-QCLGNSSDELSVLDLQGNNFFGTIP 261
S+T + L+ +++ ++N+ L Q N L L L N
Sbjct: 27 GKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTN----LKELHLSHNQ------ 74
Query: 262 NTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP 321
I + L + +KLE L + N++ + L+ L L +N +++
Sbjct: 75 ---ISD---LSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNE----LRDT 121
Query: 322 RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANL 381
+ L I+ + NN + L + L N + + L
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIVMLGFL--------SKLEVLDLHGNEITNTGG--LTRL 171
Query: 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417
K + ++L L ++ + +
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 17/160 (10%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
+Q +N L + +L+ +H++ +S S L++L++L L + +N
Sbjct: 43 VQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNR-- 96
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
+K ++ L L L N L L+ + +R+ L L
Sbjct: 97 --LK-NLNGIPSACLSRLFLDNNELRDTDSLIHLK---NLEILSIRNNKLKSIVM-LGFL 149
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160
L VLDL N I ++ +N ++++
Sbjct: 150 SKLEVLDLHGNEITNTGG----LTRLKKVNWIDLTGQKCV 185
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 42/164 (25%), Positives = 59/164 (35%), Gaps = 14/164 (8%)
Query: 280 LEFLGLGNNQISDTFPSW-LGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNN 338
L L +N +S W L NL+ L+L N I LR +DLS+N
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI--SSEAFVPVPNLRYLDLSSN 98
Query: 339 IFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHI 398
+ TL F + ++L NN V + ++ LQ L L N +
Sbjct: 99 -HLHTLDEFLF-----SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RF 151
Query: 399 P----SCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVS 438
P LP L LDLS+NK L +L +
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 13/170 (7%)
Query: 52 LDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT-SNTTSQKLKYIGLRSCNL 110
LDL+ N+ ++ + T NL L LS N L+ ++ + L+Y+ L S +L
Sbjct: 44 LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN--LRYLDLSSNHL 100
Query: 111 TKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVL 169
+ L VL L +N I V + + +M L L +S N ++ F L+
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKD 158
Query: 170 PANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPS--WICN 217
L+ DLSSN L+ P + L + + + C+
Sbjct: 159 GNKLPKLMLLDLSSNKLK----KLPLTDLQKLPAWVKNGLYLHNNPLECD 204
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 18/167 (10%)
Query: 1 LQFLYLRLNNFSG-DLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSY 59
L L NN S + L +L ++ ++ +++ + + + L +LDL+ N
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-- 98
Query: 60 RGTIKLDVL----LTSWKNLEFLALSLNRLSVLTKAT-SNTTSQKLKYIGLRSCNLTKFP 114
L L + + LE L L N + V+ + + L+ + L +++FP
Sbjct: 99 ----HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ--LQKLYLSQNQISRFP 152
Query: 115 N----FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHN 157
L++LDLS N+++ L N L + +N
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 71/442 (16%), Positives = 135/442 (30%), Gaps = 44/442 (9%)
Query: 21 NLRSLEAIHIAKCNVSGQITSSL--RNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFL 78
NLR L+++H + VS L L L L K S T L ++T + ++ L
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169
Query: 79 ALSLNRLSVLTKATSNTTSQ---KLKYIGLRSCNLTKFPN-----FLQNQYHLLVLDLSD 130
+ + S + +Q L+ + K +N L+ + + D
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229
Query: 131 NRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPL 190
I V + N++ +++ + +V P L + N +
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289
Query: 191 PVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHN-NLSGLLPQCLGNSSDELSVL 249
P L T + + I LE L + GL + L +L L
Sbjct: 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL--EVLAQYCKQLKRL 347
Query: 250 DLQG--NNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT-LPNLNV 306
++ + + +R + C +LE++ + + I++ +GT L NL
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL-- 405
Query: 307 LILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILS 366
R++ L I LPL + + +
Sbjct: 406 ---------------------CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444
Query: 367 NNSF---DSVIPASIANLKGLQVLNLQNNSLQGH-IPSCLGNLPNLESLDLSNNKFSGQI 422
D + ++ + L + PNL+ L++ FS +
Sbjct: 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504
Query: 423 PQQLVE-LTFLEFFNVSDNHLT 443
V L L + V +
Sbjct: 505 IAAAVTKLPSLRYLWVQGYRAS 526
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 54/353 (15%), Positives = 109/353 (30%), Gaps = 71/353 (20%)
Query: 116 FLQNQYHLLVLDLSDNRIQGKVPKWL---LDPNMQNLNALNISHNFLT--GFDQHLVVLP 170
F + + LDLS N + L ++ +LN+S N L D+ + +L
Sbjct: 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76
Query: 171 ANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNN 230
A ++ + +LS N L S++ L + + + L L N+
Sbjct: 77 AIPANVTSLNLSGNFLSY-------------KSSDELVKTLAAIPFTI---TVLDLGWND 120
Query: 231 LSG----LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC-SKLEFLGL 285
S Q N ++ L+L+GN+ + E + + L + + L L
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGND----LGIKSSDE--LIQILAAIPANVNSLNL 174
Query: 286 GNNQISDTFPSWLGT-LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIF--IG 342
N ++ + L L ++ + + +DLS N+
Sbjct: 175 RGNNLASKNCAELAKFLASIP----------------------ASVTSLDLSANLLGLKS 212
Query: 343 TLPLKSFLCWNAMKIVNTTGIILSNNSFDSV----IPASIANLKGLQVLNLQNNSLQG-- 396
L + + L N + +LK LQ + L + ++
Sbjct: 213 YAELAYIFSSIPNHV---VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269
Query: 397 -----HIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTG 444
+ + N+ + +D + + + L L
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN 322
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 53/247 (21%), Positives = 76/247 (30%), Gaps = 51/247 (20%)
Query: 174 GDLLTFDLSSNNLQG-PLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS 232
+ + D SS L P +P L +N L+ L L L L+ N L
Sbjct: 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDL-QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 233 GL---LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQ 289
L + + L N L L + N +P + L L L L NQ
Sbjct: 75 TLPAGIFKELKN----LETLWVTDNKL-QALPI------GVFDQL---VNLAELRLDRNQ 120
Query: 290 ISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSF 349
+ P +L L L L N + L +F
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYN------------------ELQSLPKGVFD-------- 154
Query: 350 LCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLE 409
K+ + + L NN V + L L+ L L NN L+ +L L+
Sbjct: 155 ------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 410 SLDLSNN 416
L L N
Sbjct: 209 MLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 15/179 (8%)
Query: 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339
+ L L +N++S L L +L L N + L + +++N
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL--PAGIFKELKNLETLWVTDN- 95
Query: 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI-ANLKGLQVLNLQNNSLQGHI 398
+ LP+ F ++VN + L N S +P + +L L L+L N LQ
Sbjct: 96 KLQALPIGVF-----DQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLP 149
Query: 399 PSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDN 457
L +L+ L L NN+ +LT L+ + +N L +P G FD+
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEG----AFDS 203
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 351 CWNAMKIVNTTGIILSNNSFDSV---IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPN 407
C N V+ S+ ++ IPA + L+LQ+N L L
Sbjct: 14 CNNNKNSVD-----CSSKKLTAIPSNIPAD------TKKLDLQSNKLSSLPSKAFHRLTK 62
Query: 408 LESLDLSNNKFS---GQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
L L L++NK I ++L L L V+DN L L P G
Sbjct: 63 LRLLYLNDNKLQTLPAGIFKELKNLETL---WVTDNKLQAL-PIG 103
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 6e-08
Identities = 62/405 (15%), Positives = 113/405 (27%), Gaps = 98/405 (24%)
Query: 86 SVLTKATSNTTSQKLK------YIGLRSCNLTK-FPNFLQNQYHLLVLDLSDNRIQGKVP 138
+ + + + K ++ L++CN + LQ + + + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 139 KWLLDPNMQNLNALNISHNFLTGFDQHLVVLP--ANKGDLLTFDLSSNNLQGPLPVPPPG 196
K + L L S + L+VL N F+LS L +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENC----LLVLLNVQNAKAWNAFNLSCKIL-----L---- 270
Query: 197 TIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF 256
T + + L+ + I + +L + + + LL + L +L L N
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 257 FGTIPNTFIKER--RIPRSL-INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI 313
+I I++ +NC KL I ++ L L R
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKL-------TTIIESS------LNVLEPAEYRKM- 374
Query: 314 FYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV 373
F +L + S +I L L W +
Sbjct: 375 -------------FDRLSVFPPSAHIPTILLS----LIWFDV---------------IKS 402
Query: 374 IPASIAN-LKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVE-LTF 431
+ N L ++ Q IPS LE N++ + + +V+
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIY-----LELKVKLENEY--ALHRSIVDHYNI 455
Query: 432 LEFF-------NVSDN--------HLTGLIPPGKQFATFDNTSFD 461
+ F D HL I ++ F D
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKN-IEHPERMTLFRMVFLD 499
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 6e-05
Identities = 70/453 (15%), Positives = 136/453 (30%), Gaps = 141/453 (31%)
Query: 5 YLRLNNFSGDL--LGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGT 62
L+ + L L ++ N ++ A ++ C + +T+ R FL A ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNL-SCKI--LLTT--RFKQVTDFLSAATTTHISL 291
Query: 63 IKLDVLLTSWKNLEFLALSLN-RLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQY 121
+ LT + L L+ R L + T ++L I + N
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---IRDGLATWDNWK 348
Query: 122 HLLVLDLSDNRIQGKVPKWLLDPN-MQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
H+ L+ I+ + L+P + + FD+ L V P +
Sbjct: 349 HVNCDKLT-TIIESSLNV--LEPAEYRKM------------FDR-LSVFPPS-------- 384
Query: 181 LSSNNLQGPLPVP-PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
P + + W ++ +
Sbjct: 385 -----------AHIPTILLSLI------------W--------------FDVIKSDVMVV 407
Query: 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIP-------RSLINCSKLEFLGLGNNQISD 292
N + S+++ Q +IP+ +++ + RS+++ I
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY----------NIPK 457
Query: 293 TFPSWLGTLPNLNVLILRSNIFYGII----KEPRTDCGFSKLRII--DLSNNIFIGTLPL 346
TF S P L FY I K + R++ D F+
Sbjct: 458 TFDSDDLIPPYL------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQ--- 505
Query: 347 KSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIP------- 399
KI + + + N+ SI N LQ L + + P
Sbjct: 506 ---------KIRHDS---TAWNA-----SGSILNT--LQQLKFYKPYICDNDPKYERLVN 546
Query: 400 SCLGNLPNLESLDLSNNKFSGQIPQQLVELTFL 432
+ L LP +E +L +K++ L+ + +
Sbjct: 547 AILDFLPKIEE-NLICSKYT-----DLLRIALM 573
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 61/437 (13%), Positives = 142/437 (32%), Gaps = 35/437 (8%)
Query: 6 LRLNNFSGDLLGSIG-NLRSLEAIHIAKCNVSGQITSSL-RNLSQLFFLDLAKNSYRGTI 63
+ + ++ + LE I + + V+ + ++ L L+ T
Sbjct: 87 DGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146
Query: 64 KLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQ---KLKYIGLRSC--NLTK--FPNF 116
L + + +NL+ L L + + ++ + L + + ++
Sbjct: 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206
Query: 117 LQNQYHLLVLDLSDNR-IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGD 175
+ +L L L+ ++ P ++ L + L V + +
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266
Query: 176 LLTFDLSSNNLQGPLPVPPPGTIH----YLASNNSLTGEIPSWICNLNILESLVLSHN-N 230
L + + LP L+ + ++ +C L+ L +
Sbjct: 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE 326
Query: 231 LSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQI 290
+GL + L ++ +L L + + F PN + E+ + + C KLE + Q+
Sbjct: 327 DAGL--EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384
Query: 291 SD----TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGF-------SKLRIIDLSNNI 339
++ T + + I+ + EP D GF LR + LS +
Sbjct: 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP-LDIGFGAIVEHCKDLRRLSLSGLL 443
Query: 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQN-NSLQGHI 398
M++++ S+ V ++ L+ L +++ +
Sbjct: 444 TDKVFEYIGTYAKK-MEMLSVAFAGDSDLGMHHV----LSGCDSLRKLEIRDCPFGDKAL 498
Query: 399 PSCLGNLPNLESLDLSN 415
+ L + SL +S+
Sbjct: 499 LANASKLETMRSLWMSS 515
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 50/362 (13%), Positives = 103/362 (28%), Gaps = 46/362 (12%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCN------VSGQITSSLRNLSQLFFLDL 54
L+ L L L + LE + V ++ +L +L L
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL--RCL 270
Query: 55 AKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSC-NLTKF 113
+ L + + L L LS + KL+ + +
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330
Query: 114 PNFLQNQYHLLVLDLSDNRIQGKVPKWLLD--------PNMQNLNALNISHNFLTGFDQH 165
L L + + P L L ++ +T +
Sbjct: 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT--NAA 388
Query: 166 LVVLPANKGDLLTFDLSSNNLQGPLPVPPPGT---IHYLASNNS----------LTGEIP 212
L+ + N+ ++ F L + P + + + LT ++
Sbjct: 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVF 448
Query: 213 SWI-CNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIP 271
+I +E L ++ S L + + D L L+++ F ++ +
Sbjct: 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG---------DKALL 499
Query: 272 RSLINCSKLEFLGLGNNQISDTFPSWLGT-LPNLNVLILRSNIFYGIIKEPRTDCGFSKL 330
+ + L + + +S LG +P LNV ++ G C ++
Sbjct: 500 ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER---GAPDSRPESCPVERV 556
Query: 331 RI 332
I
Sbjct: 557 FI 558
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417
T I L N+ + P + + K L+ ++L NN + P L +L SL L NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 418 FSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDN 457
+ L L+ ++ N + + F +
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINC-LRVD----AFQD 126
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 8/118 (6%)
Query: 302 PNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTT 361
+ + L N I P + KLR IDLSNN I L +F + +
Sbjct: 32 ETITEIRLEQNTIKVI--PPGAFSPYKKLRRIDLSNN-QISELAPDAF-----QGLRSLN 83
Query: 362 GIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419
++L N + + L LQ+L L N + +L NL L L +NK
Sbjct: 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 8/134 (5%)
Query: 283 LGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIG 342
+ L N I P L + L +N + P G L + L N I
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGN-KIT 93
Query: 343 TLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCL 402
LP F + + ++L+ N + + + +L L +L+L +N LQ
Sbjct: 94 ELPKSLF-----EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 403 GNLPNLESLDLSNN 416
L ++++ L+ N
Sbjct: 149 SPLRAIQTMHLAQN 162
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 57/340 (16%), Positives = 118/340 (34%), Gaps = 50/340 (14%)
Query: 123 LLVLDLSDNRIQGKVPKWLLDP--NMQNLNALNISHNFLTGFD-QHLVVLPANKGDLLTF 179
+ L + I + K + ++ + +S N + + L A+K DL
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
+ S P + + L ++ LS N + L
Sbjct: 66 EFSDIFTGRVKDEIPEALRL-----------LLQALLKCPKLHTVRLSDNAFGPTAQEPL 114
Query: 240 GN---SSDELSVLDLQGNNF---FGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD- 292
+ L L L N G ++E + + N L + G N++ +
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174
Query: 293 ---TFPSWLGTLPNLNVLILRSNIFY-----GIIKEPRTDCGFSKLRIIDLSNNIF--IG 342
+ + L+ + + N ++ E C +L+++DL +N F +G
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC--QELKVLDLQDNTFTHLG 232
Query: 343 TLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANL------KGLQVLNLQNNSLQG 396
+ L L N + L++ + A++ + GLQ L LQ N ++
Sbjct: 233 SSALAIALKSWP----NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288
Query: 397 ----HIPSCLG-NLPNLESLDLSNNKFS--GQIPQQLVEL 429
+ + + +P+L L+L+ N+FS + ++ E+
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 50/296 (16%), Positives = 89/296 (30%), Gaps = 67/296 (22%)
Query: 23 RSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSY--RGTIKLDVLLTSWKNLE 76
S+E + ++ + + + L + + L+ N+ L + S K+LE
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 77 FLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGK 136
S + + + L+ + L L + LSDN
Sbjct: 64 IAEFSDIFTGRV----KDEIPEALRLLL----------QALLKCPKLHTVRLSDNAFGPT 109
Query: 137 VPKWLLD--PNMQNLNALNISHNFLTG----------FDQHLVVLPANKGDLLTFDLSSN 184
+ L+D L L + +N L + + N L + N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169
Query: 185 NLQGPLPVPPPGTIH---YLASNNSLTGEIPSWICNLNILESLVLSHNNL-----SGLLP 236
L+ S+ L ++ + N + LL
Sbjct: 170 RLE------NGSMKEWAKTFQSHRLLH--------------TVKMVQNGIRPEGIEHLLL 209
Query: 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
+ L EL VLDLQ N F T + + +L + L LGL + +S
Sbjct: 210 EGLAYCQ-ELKVLDLQDNTF------THLGSSALAIALKSWPNLRELGLNDCLLSA 258
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 4e-07
Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 13/169 (7%)
Query: 270 IPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSK 329
+ L L L + PNL L + S + E
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDLPN 220
Query: 330 LRIIDL---SNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIAN---LKG 383
L + L + ++ + N + + + +V+ L
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 384 LQVLNLQNNSLQG----HIPSCLGNLPNLESLDLSNNKFSGQIPQQLVE 428
L+ +++ L + + + +L+ +++ N S ++ ++L +
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 9e-07
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 19/163 (11%)
Query: 13 GDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSW 72
DL + + L + I N ++ + L L++ ++ D+L +
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218
Query: 73 KNLEFLALSLNR--------LSVLTKATSNTTSQKLKYIGLRSCNLT-----KFPNFLQN 119
NLE L L + ++V S LK++G+ F
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLD--PNMQNLNALNISHNFLT 160
L +D+S + + + LLD +++L +N+ +N+L+
Sbjct: 279 P-QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 36/160 (22%), Positives = 52/160 (32%), Gaps = 40/160 (25%)
Query: 268 RRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGF 327
++ +L + L L N I S L + NL +L L N I K D
Sbjct: 38 EKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRN---LIKKIENLDAVA 92
Query: 328 SKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVL 387
L + +S N +I + +G I L L+VL
Sbjct: 93 DTLEELWISYN-----------------QIASLSG---------------IEKLVNLRVL 120
Query: 388 NLQNNSLQ--GHIPSCLGNLPNLESLDLSNNKFSGQIPQQ 425
+ NN + G I L L LE L L+ N +
Sbjct: 121 YMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKEN 159
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 64 KLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHL 123
K+D L++ K + LALS N + ++ + L+ + L + K N L
Sbjct: 39 KMDATLSTLKACKHLALSTNNIEKISSLSGME---NLRILSLGRNLIKKIENLDAVADTL 95
Query: 124 LVLDLSDNRIQGKVPKWLLDP--NMQNLNALNISHNFLTGFD--QHLVVLPANKGDLLTF 179
L +S N+I L + NL L +S+N +T + L L L
Sbjct: 96 EELWISYNQIA------SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALD----KLEDL 145
Query: 180 DLSSN 184
L+ N
Sbjct: 146 LLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 35/172 (20%), Positives = 53/172 (30%), Gaps = 39/172 (22%)
Query: 283 LGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIG 342
L I + L TL L L +N I++ + G LRI+ L N
Sbjct: 30 LHGMIPPIEK-MDATLSTLKACKHLALSTNN----IEKISSLSGMENLRILSLGRN---- 80
Query: 343 TLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCL 402
I + A L+ L + N + + S +
Sbjct: 81 -------------LIKKIENLD--------------AVADTLEELWISYNQIA-SL-SGI 111
Query: 403 GNLPNLESLDLSNNKFSG-QIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFA 453
L NL L +SNNK + +L L LE ++ N L +
Sbjct: 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 8e-07
Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 11/100 (11%)
Query: 374 IPASIANLKGLQVLNLQNNSLQGHIPS-CLGNLPNLESLDLSNNKFSGQIPQQLVELTFL 432
+ + L L ++N H+ L L L +L + + P L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 433 EFFNVSDNHLTGLIPPGKQFATFDNTS-----FDSNSGLC 467
N+S N L L T S N C
Sbjct: 83 SRLNLSFNALESL-SWK----TVQGLSLQELVLSGNPLHC 117
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 9e-06
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 316 GIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIP 375
G + G L + + N + L L+ + + + + V P
Sbjct: 19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLR-----GLGELRNLTIVKSGLRFVAP 73
Query: 376 ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
+ L LNL N+L+ + +L+ L LS N
Sbjct: 74 DAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 8e-05
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 269 RIPRSLINCSKLEFLGLGNNQISDTFPSW-LGTLPNLNVLILRSNIFYGIIKEPRTDCGF 327
L L L + N Q L L L L + + + P
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV--APDAFHFT 79
Query: 328 SKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD 371
+L ++LS N + +L W ++ ++ ++LS N
Sbjct: 80 PRLSRLNLSFN-ALESLS------WKTVQGLSLQELVLSGNPLH 116
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 38/146 (26%)
Query: 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRI 332
N + L L +I + NL +
Sbjct: 14 QYTNAVRDRELDLRGYKIPV--------IENLGAT-------------------LDQFDA 46
Query: 333 IDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNN 392
ID S+N ++ + ++ + T ++++NN + L L L L NN
Sbjct: 47 IDFSDN------EIRKLDGFPLLRRLKT--LLVNNNRICRIGEGLDQALPDLTELILTNN 98
Query: 393 SLQ--GHIPSCLGNLPNLESLDLSNN 416
SL G + L +L +L L + N
Sbjct: 99 SLVELGDL-DPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 87 VLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNM 146
++ +A T + + + + LR + N +D SDN I+ K+ + P +
Sbjct: 8 LIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGF---PLL 63
Query: 147 QNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNS 206
+ L L +++N + + L + L L++N+L G + LAS S
Sbjct: 64 RRLKTLLVNNNRICRIGEGLDQALPD---LTELILTNNSLVE------LGDLDPLASLKS 114
Query: 207 LT 208
LT
Sbjct: 115 LT 116
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 21/125 (16%)
Query: 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276
N L L + + + LG + D+ +D +N +
Sbjct: 17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFS-DNEIRKLDG-----------FPL 62
Query: 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDC---GFSKLRII 333
+L+ L + NN+I LP+L LIL +N + E L +
Sbjct: 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN----SLVELGDLDPLASLKSLTYL 118
Query: 334 DLSNN 338
+ N
Sbjct: 119 CILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 10/114 (8%)
Query: 328 SKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVL 387
+ R +DL L + L I S+N + L+ L+ L
Sbjct: 19 VRDRELDLRGYKIPVIENLGATL-------DQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69
Query: 388 NLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG-QIPQQLVELTFLEFFNVSDN 440
+ NN + LP+L L L+NN L L L + + N
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 379 ANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVS 438
A L ++ +N ++ L L++L ++NN+ L L ++
Sbjct: 39 ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96
Query: 439 DNHLTGL 445
+N L L
Sbjct: 97 NNSLVEL 103
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417
+T + L + ++ A+ L L LNL N LQ +L L +L L+NN+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 418 FS---GQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
+ + L +L L + N L L P G
Sbjct: 95 LASLPLGVFDHLTQLDKL---YLGGNQLKSL-PSG 125
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 38/168 (22%), Positives = 58/168 (34%), Gaps = 18/168 (10%)
Query: 249 LDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLI 308
LDLQ TF +KL +L L NQ+ L L L
Sbjct: 40 LDLQSTGLATLSDATFR----------GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89
Query: 309 LRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNN 368
L +N + ++L + L N + +LP F ++ + L+ N
Sbjct: 90 LANNQLASL--PLGVFDHLTQLDKLYLGGN-QLKSLPSGVF-----DRLTKLKELRLNTN 141
Query: 369 SFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416
S+ + L LQ L+L N LQ L L+++ L N
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 15/152 (9%)
Query: 307 LILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILS 366
L L+S + T G +KL ++L N + TL F + + L+
Sbjct: 40 LDLQSTGLATL--SDATFRGLTKLTWLNLDYNQ-LQTLSAGVF-----DDLTELGTLGLA 91
Query: 367 NNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQL 426
NN S+ +L L L L N L+ L L+ L L+ N+ IP
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGA 150
Query: 427 VE-LTFLEFFNVSDNHLTGLIPPGKQFATFDN 457
+ LT L+ ++S N L +P G FD
Sbjct: 151 FDKLTNLQTLSLSTNQLQS-VPHG----AFDR 177
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 365 LSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG-QIP 423
N S+ A++ L L+ L L +N + G + PNL L+LS NK
Sbjct: 49 TINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106
Query: 424 QQLVELTFLEFFNVSDNHLT 443
+ L +L L+ ++ + +T
Sbjct: 107 EPLKKLENLKSLDLFNCEVT 126
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-06
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 63 IKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYH 122
I L++ + +++ L L +R + ++L+++ + LT N L
Sbjct: 7 IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNK 65
Query: 123 LLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ--HLVVLPANKGDLLTFD 180
L L+LSDNR+ G + +L NL LN+S N + L L +L + D
Sbjct: 66 LKKLELSDNRVSGGLE--VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE----NLKSLD 119
Query: 181 LSSN 184
L +
Sbjct: 120 LFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 363 IILSNNSFDSV-IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQ 421
++L N+ + + + L+ L+ N L I + L L L+ L+LS+N+ SG
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG 79
Query: 422 IPQQLVELTFLEFFNVSDNHLTGL 445
+ + L N+S N + L
Sbjct: 80 LEVLAEKCPNLTHLNLSGNKIKDL 103
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 13/122 (10%)
Query: 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276
+ ++ LVL ++ + + L + +EL L +I N L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIAN-----------LPK 62
Query: 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLS 336
+KL+ L L +N++S PNL L L N + L+ +DL
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLF 121
Query: 337 NN 338
N
Sbjct: 122 NC 123
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 8e-06
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 365 LSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG-QIP 423
L N SV +++ L L+ L L N + G + LPNL L+LS NK
Sbjct: 56 LINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL 113
Query: 424 QQLVELTFLEFFNVSDNHLT 443
+ L +L L+ ++ + +T
Sbjct: 114 EPLKKLECLKSLDLFNCEVT 133
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 27/122 (22%), Positives = 37/122 (30%), Gaps = 13/122 (10%)
Query: 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276
+ LVL + + + L L L L ++ N L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSN-----------LPK 69
Query: 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLS 336
KL+ L L N+I LPNL L L N I L+ +DL
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLF 128
Query: 337 NN 338
N
Sbjct: 129 NC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 363 IILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQI 422
++ + S D I A L+ L+L N L + S L LP L+ L+LS N+ G +
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87
Query: 423 PQQLVELTFLEFFNVSDNHLTGL 445
+L L N+S N L +
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLKDI 110
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 34/156 (21%), Positives = 51/156 (32%), Gaps = 36/156 (23%)
Query: 265 IKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324
+ +I LEFL L N + S L LP L L L N +G
Sbjct: 36 SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG--LDMLA 91
Query: 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGL 384
L ++LS N K+ ++ P + L+ L
Sbjct: 92 EKLPNLTHLNLSGN-----------------KL----------KDISTLEP--LKKLECL 122
Query: 385 QVLNLQNN---SLQGHIPSCLGNLPNLESLDLSNNK 417
+ L+L N +L + S LP L LD + +
Sbjct: 123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 10/127 (7%)
Query: 331 RIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQ 390
+ L+NN F F K+ I SNN + + G+ + L
Sbjct: 35 AELRLNNNEFTVLEATGIF-----KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89
Query: 391 NNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGK 450
+N L+ L +L++L L +N+ + + L+ + ++ DN +T + PG
Sbjct: 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPG- 147
Query: 451 QFATFDN 457
FD
Sbjct: 148 ---AFDT 151
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 17/145 (11%)
Query: 248 VLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVL 307
L L N F T ++ I + L +L + NN+I+D +N +
Sbjct: 36 ELRLNNNEF------TVLEATGIFKKL---PQLRKINFSNNKITDIEEGAFEGASGVNEI 86
Query: 308 ILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSN 367
+L SN + + + G L+ + L +N I + SF + + + + L +
Sbjct: 87 LLTSNRLENV--QHKMFKGLESLKTLMLRSNR-ITCVGNDSF-----IGLSSVRLLSLYD 138
Query: 368 NSFDSVIPASIANLKGLQVLNLQNN 392
N +V P + L L LNL N
Sbjct: 139 NQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415
++ N T +IL+ N S+ L L+ L L N LQ L NL L+L++
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 416 NKFSGQIPQ----QLVELTFLEFFNVSDNHLTGLIPPG 449
N+ +P+ +L LT L ++S N L L P G
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTEL---DLSYNQLQSL-PEG 175
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 358 VNTTGIILSNNSFDSVIPASI-ANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416
++TT ++L++N + + L L L L+ N L G P+ +++ L L N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 417 KFSGQIPQ----QLVELTFLEFFNVSDNHLTGLIPPGKQFATFDN 457
K +I L +L L N+ DN ++ + PG +F++
Sbjct: 89 KIK-EISNKMFLGLHQLKTL---NLYDNQISC-VMPG----SFEH 124
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417
TT + L NS S+ L L L L N LQ L +L L+LS N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 418 FSGQIPQ----QLVELTFLEFFNVSDNHLTGLIPPG 449
+P +L +L L ++ N L L P G
Sbjct: 88 LQ-SLPNGVFDKLTQLKEL---ALNTNQLQSL-PDG 118
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.92 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.85 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.83 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.83 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.79 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.76 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.75 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.74 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.7 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.7 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.66 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.65 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.64 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.56 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.55 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.53 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.52 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.52 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.51 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.51 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.5 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.5 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.47 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.44 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.42 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.37 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.36 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.31 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.28 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.25 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.25 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.23 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.19 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.12 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.9 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.76 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.73 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.5 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.44 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.29 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.2 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.19 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.0 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.59 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.36 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.36 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.89 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-58 Score=499.43 Aligned_cols=467 Identities=34% Similarity=0.526 Sum_probs=353.8
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++|+|++|.+++.+|. +.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|. ..+++|++|++
T Consensus 202 L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~L 276 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSL 276 (768)
T ss_dssp CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC----CCCTTCCEEEC
T ss_pred CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc----cccCCCCEEEC
Confidence 46666777766665555 66677777777777777666666677777777777777766654442 25666666666
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCcCCCCCCcc-cccccCCCCcEEEccCCc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNRIQGKVPKW-LLDPNMQNLNALNISHNF 158 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~ 158 (549)
++|.++..........+++|++|++++|.+ +.+|..+..+++|++|++++|.+++.+|.. +. .+++|++|++++|.
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~--~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL--KMRGLKVLDLSFNE 354 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT--TCTTCCEEECCSSE
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh--cCCCCCEEeCcCCc
Confidence 666444211111111246777777777777 466677777777777777777776666654 55 67777777777777
Q ss_pred CCCCCCccccccCCCCCccEEEccCCcCCCCCCCC-----CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCC
Q 040238 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP-----PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG 233 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 233 (549)
+.+..+.... ... ++|+.|++++|.+.+.+|.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus 355 l~~~~p~~l~-~l~-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 355 FSGELPESLT-NLS-ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp EEECCCTTHH-HHT-TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cCccccHHHH-hhh-cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 6643333221 111 12777777777766555443 4567777777777777777777777777777777777777
Q ss_pred cCCcchhcCCCCCCeeecCCCccCCcCCCcccc--------------cCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 234 LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
.+|..+..+. +|++|++++|.+++.+|..+.. .+.+|.++..+++|++|++++|++++..|.+++
T Consensus 433 ~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 433 TIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp CCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 7776666554 6777777777777776665543 235677789999999999999999999999999
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc------------------------
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM------------------------ 355 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l------------------------ 355 (549)
.+++|++|++++|.+.+..+..+ ..+++|+.|++++|++.|.+|...+......
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred cCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 99999999999999998877665 8899999999999999999997755421100
Q ss_pred ----------------------------------------cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccc
Q 040238 356 ----------------------------------------KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ 395 (549)
Q Consensus 356 ----------------------------------------~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 395 (549)
...+++.|++++|.+++.+|..|+.+++|+.|+|++|+++
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence 0124588999999999999999999999999999999999
Q ss_pred cCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCCCCCCC
Q 040238 396 GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGC 475 (549)
Q Consensus 396 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~c 475 (549)
+.+|+.|+.+++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|...++.++...++.|||++||.|+. .|
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C 748 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC 748 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CC
T ss_pred CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 78
Q ss_pred CCCCC
Q 040238 476 ESDVA 480 (549)
Q Consensus 476 ~~~~~ 480 (549)
....+
T Consensus 749 ~~~~~ 753 (768)
T 3rgz_A 749 DPSNA 753 (768)
T ss_dssp CSCC-
T ss_pred CCCcc
Confidence 75444
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-52 Score=457.32 Aligned_cols=447 Identities=20% Similarity=0.159 Sum_probs=328.5
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCc-cccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEe
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSG-QITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLA 79 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~ 79 (549)
|++|||++|.+++..+.+|.++++|++|+|++|...+ +.|+.|.++++|++|+|++|.+++..|.. |.++++|++|+
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~ 103 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA--FQGLFHLFELR 103 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS--SCSCSSCCCEE
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH--ccCCcccCEee
Confidence 6899999999999999999999999999999996554 44889999999999999999999777877 99999999999
Q ss_pred ccCCccceee-ccCCCcCCCCCCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCCCcccccccC--CCCcEEEc
Q 040238 80 LSLNRLSVLT-KATSNTTSQKLKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNM--QNLNALNI 154 (549)
Q Consensus 80 Ls~n~i~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~~L~~L~L 154 (549)
+++|.++... .......+++|++|++++|.++.++ ..+.++++|++|++++|.+++..+..+. .+ ++|+.|++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~--~l~~~~L~~L~L 181 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE--PLQGKTLSFFSL 181 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH--HHHHCSSCCCEE
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc--cccCCccceEEC
Confidence 9999877532 2222337899999999999996653 5799999999999999999988888886 55 78888888
Q ss_pred cCCcCCCCCCccccc---cCCCCCccEEEccCCcCCCCCCCC--------------------------------------
Q 040238 155 SHNFLTGFDQHLVVL---PANKGDLLTFDLSSNNLQGPLPVP-------------------------------------- 193 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~-------------------------------------- 193 (549)
++|.+.+..+..+.. ......|+.|++++|.+.+..+..
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 888877654432111 111223778888887655433211
Q ss_pred ---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCC
Q 040238 194 ---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI 270 (549)
Q Consensus 194 ---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l 270 (549)
.++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+. +|++|++++|.+++..+..
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~------- 333 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSN------- 333 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCS-------
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHH-------
Confidence 25677888888888777777778888888888888888766666655544 7888888888877655444
Q ss_pred CccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCC-----------------------------
Q 040238 271 PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP----------------------------- 321 (549)
Q Consensus 271 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------------- 321 (549)
+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.++....
T Consensus 334 ---~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 334 ---FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp ---CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred ---hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence 356777777777777777666666777777777777777665432100
Q ss_pred ---------CCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCc-----ccCchhhcCCCCCCEE
Q 040238 322 ---------RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD-----SVIPASIANLKGLQVL 387 (549)
Q Consensus 322 ---------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~-----~~~~~~~~~l~~L~~L 387 (549)
..+..+++|+.|++++|++.+..+...+..+++| +.|++++|.++ +..+..|.++++|++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-----~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L 485 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL-----EQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-----CBCEEESCCCSSSCCSCCCSSCSSCBCCEECC
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-----ccccCCCCccccccccccchhhhcCcccccEE
Confidence 0011344555555555554433222222223333 66777777765 3344567788888888
Q ss_pred EccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCC
Q 040238 388 NLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLC 467 (549)
Q Consensus 388 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc 467 (549)
+|++|.+++..|..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++..|.. +..+..+.+.+||+.|
T Consensus 486 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCC
T ss_pred ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccc
Confidence 8888888888888888888899999999888876666665 78888999999888887743 5567778889999999
Q ss_pred CCCC
Q 040238 468 GRPL 471 (549)
Q Consensus 468 ~~~~ 471 (549)
+|++
T Consensus 562 ~c~~ 565 (844)
T 3j0a_A 562 ECEL 565 (844)
T ss_dssp SSSC
T ss_pred cccc
Confidence 7764
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=446.88 Aligned_cols=442 Identities=31% Similarity=0.445 Sum_probs=360.2
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
++|++++|.+++..+ +.++++|++|++++|.+.+..|. ++++++|++|++++|.+++..+.. +..+++|++|+++
T Consensus 181 ~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 181 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA--ISTCTELKLLNIS 255 (768)
T ss_dssp CEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH--TTTCSSCCEEECC
T ss_pred CEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH--HhcCCCCCEEECC
Confidence 344444444443332 25677777777777777776665 888888888888888888777766 7888888888888
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCC-CCChhhcCC-CCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLT-KFPNFLQNQ-YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
+|.+.. ..+.. .+++|++|++++|.++ .+|..+... ++|++|++++|.+++..|..+. .+++|++|++++|.+
T Consensus 256 ~n~l~~--~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 256 SNQFVG--PIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG--SCSLLESLALSSNNF 330 (768)
T ss_dssp SSCCEE--SCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG--GCTTCCEEECCSSEE
T ss_pred CCcccC--ccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh--cCCCccEEECCCCcc
Confidence 886543 22222 6788999999999884 888877665 8999999999999888999998 899999999999988
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCC---C-CCcceeecccCCCCCcCchhhhc--CCCCCeEeCcCCcCCC
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP---P-PGTIHYLASNNSLTGEIPSWICN--LNILESLVLSHNNLSG 233 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~-~~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~Ls~n~l~~ 233 (549)
.+..+......... |++|++++|.+.+.+|.. . ++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+
T Consensus 331 ~~~ip~~~l~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 331 SGELPMDTLLKMRG--LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEECCHHHHTTCTT--CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred cCcCCHHHHhcCCC--CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 75444322333333 999999999999888876 3 38999999999999988888877 8899999999999998
Q ss_pred cCCcchhcCCCCCCeeecCCCccCCcCCCcccc--------------cCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 234 LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
.+|..+..+. +|++|++++|.+++..|..+.. .+.+|..+..+++|++|++++|++++..|..+.
T Consensus 409 ~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 409 KIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp ECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred ccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 9998888766 8999999999999988887755 235677888889999999999999988888899
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhh-
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI- 378 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~- 378 (549)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|++.+.+|.. +..+++| +.|++++|.+++.+|..+
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L-----~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAE-LGDCRSL-----IWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGGCTTC-----CEEECCSSEEESBCCGGGG
T ss_pred cCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHH-HcCCCCC-----CEEECCCCccCCcCChHHh
Confidence 99999999999999888776655 78899999999999998888854 6777777 889999998887766543
Q ss_pred ---------------------------------------------------------------------cCCCCCCEEEc
Q 040238 379 ---------------------------------------------------------------------ANLKGLQVLNL 389 (549)
Q Consensus 379 ---------------------------------------------------------------------~~l~~L~~L~l 389 (549)
..+++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 34578999999
Q ss_pred cCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCC
Q 040238 390 QNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNS 464 (549)
Q Consensus 390 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~ 464 (549)
++|++++.+|..++.+++|+.|+|++|++++.+|..+.++++|+.||+++|+++|.+|.. ..+..++.+.+..|.
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 999999999999999999999999999999999999999999999999999999999865 344555666666554
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-50 Score=426.27 Aligned_cols=455 Identities=19% Similarity=0.185 Sum_probs=327.7
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++|||++|.+++..|.+|.++++|++|+|++|.+.+..|+.|.++++|++|++++|.+++..|.. |.++++|++|++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L 112 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA--LSGPKALKHLFF 112 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT--TSSCTTCCEEEC
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh--hcccccccEeec
Confidence 589999999999888999999999999999999999999999999999999999999999777777 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCC-hhhcCCCCccEEEeecCcCCCCCCcccccccCCCCc--EEEccCC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLN--ALNISHN 157 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~--~L~L~~n 157 (549)
++|.++.++..++. .+++|++|++++|.++.++ ..+..+++|++|++++|.+++..+..+. .+++|+ .|++++|
T Consensus 113 ~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 113 IQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQATNLSLNLNGN 189 (606)
T ss_dssp TTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH--TTTTCCSEEEECTTC
T ss_pred cccCcccCCcchhc-cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh--hhcccceeEEecCCC
Confidence 99998887666554 7899999999999997763 3445599999999999999877788887 889999 8899999
Q ss_pred cCCCCCCcccccc------------------------------------------------CCCCCccEEEccCCcCCCC
Q 040238 158 FLTGFDQHLVVLP------------------------------------------------ANKGDLLTFDLSSNNLQGP 189 (549)
Q Consensus 158 ~~~~~~~~~~~~~------------------------------------------------~~~~~L~~L~L~~n~l~~~ 189 (549)
.+.+..+..+... ....+++.|++++|.+.+.
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 8877665432110 0001366777777777665
Q ss_pred CCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCc-cc
Q 040238 190 LPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNT-FI 265 (549)
Q Consensus 190 ~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~ 265 (549)
.+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+.... +|++|++++|.+.+.++.. +.
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTT
T ss_pred CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhh
Confidence 5432 667777777777776 5666677777777777777777755555555544 6777777777766544432 21
Q ss_pred cc-------------CC---CCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCC
Q 040238 266 KE-------------RR---IPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSK 329 (549)
Q Consensus 266 ~~-------------~~---l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 329 (549)
.. .. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. .+..+++
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~ 426 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHL 426 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCccc
Confidence 10 00 0334455666666666666666555666666666666666666665543322 1255666
Q ss_pred CceeeCCCCccccccChhhhhccccccccccceEEccCCcCccc---CchhhcCCCCCCEEEccCCccccCCCcccCCCC
Q 040238 330 LRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV---IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLP 406 (549)
Q Consensus 330 L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 406 (549)
|+.|++++|.+.+..| ..+..+++| +.|++++|.+++. .+..+..+++|++|++++|++++..|..|+.++
T Consensus 427 L~~L~l~~n~l~~~~~-~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSE-QLFDGLPAL-----QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp CCEEECTTCCCBTTCT-TTTTTCTTC-----CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCEEECCCCccCCcCH-HHHhCCCCC-----CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 6666666666654333 335555555 7777777777652 224577777777777777777777777777778
Q ss_pred CCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCC
Q 040238 407 NLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 407 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+|+.|++++|++++..|..+.+++.| .|++++|++++..|.. ..+..++.+.+.+||+.|+|+
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 88888888888777777777777777 7888888777665542 234555666777777777654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-48 Score=414.17 Aligned_cols=462 Identities=19% Similarity=0.164 Sum_probs=304.1
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++|+|++|.+++..+..|.++++|++|++++|.+.+..|+.|.++++|++|++++|.+++..+.. |.++++|++|++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~l~~L~~L~L 104 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT--FAFCTNLTELHL 104 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT--TTTCTTCSEEEC
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh--hccCCCCCEEEC
Confidence 578999999998887888899999999999999988888888889999999999999888443334 788889999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCC-ChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF-PNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
++|.++.++...+. .+++|++|++++|.++.+ |..+..+++|++|++++|.+++..+..+....+++|++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 99887766554333 678888888888888544 4567788888888888888876666554322457788888888877
Q ss_pred CCCCCccccccC------------------------CCCCccEEEccCCcCCCCCCCCC-----CCcceeecccCCCCCc
Q 040238 160 TGFDQHLVVLPA------------------------NKGDLLTFDLSSNNLQGPLPVPP-----PGTIHYLASNNSLTGE 210 (549)
Q Consensus 160 ~~~~~~~~~~~~------------------------~~~~L~~L~L~~n~l~~~~~~~~-----~~L~~L~l~~n~~~~~ 210 (549)
.+..+..+.... ..++|+.|++++|.+.+..|..+ ++|+.|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 765543211000 00224444444444443333321 1244444444444443
Q ss_pred CchhhhcCCCCCeEeCcCCcCCCcCCcch--------------------------------hcCCCCCCeeecCCCccCC
Q 040238 211 IPSWICNLNILESLVLSHNNLSGLLPQCL--------------------------------GNSSDELSVLDLQGNNFFG 258 (549)
Q Consensus 211 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--------------------------------~~~~~~L~~L~L~~n~l~~ 258 (549)
.+.+|..+++|++|++++|.+.+..|..+ +...++|++|++++|.+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 33444444444444444443332222111 1112244555555555444
Q ss_pred cCCCcccc------------------------------------------cCCCCccccCCCCCcEEEccCCcCCCCcC-
Q 040238 259 TIPNTFIK------------------------------------------ERRIPRSLINCSKLEFLGLGNNQISDTFP- 295 (549)
Q Consensus 259 ~~~~~~~~------------------------------------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~- 295 (549)
..+..|.. .+..|..+..+++|++|++++|.+.+.++
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 43333221 00114456677788888888888775444
Q ss_pred cccCCCCCCCEEEccCcccccccCCC------------------------CCccCCCCCceeeCCCCccccccChhhhhc
Q 040238 296 SWLGTLPNLNVLILRSNIFYGIIKEP------------------------RTDCGFSKLRIIDLSNNIFIGTLPLKSFLC 351 (549)
Q Consensus 296 ~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 351 (549)
..+.++++|++|++++|.+.+..+.. ..+..+++|+.|++++|++. .++...|..
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~ 502 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEG 502 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhcc
Confidence 56777777777777777765543322 22356677777777777766 355556666
Q ss_pred cccccccccceEEccCCcCcccCc--------hhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCC
Q 040238 352 WNAMKIVNTTGIILSNNSFDSVIP--------ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIP 423 (549)
Q Consensus 352 l~~l~~~~l~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 423 (549)
+++| +.|++++|.+++..+ ..|.++++|++|++++|+++...++.|.++++|+.|++++|++++..+
T Consensus 503 l~~L-----~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 503 LEKL-----EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp CTTC-----CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccc-----CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH
Confidence 6666 888888888876422 236778888888888888885555678888889999999998887767
Q ss_pred cCccCCCCCcEEecccCcCcccCCCCC--CCCccCCCccCCCCCCCCCCC
Q 040238 424 QQLVELTFLEFFNVSDNHLTGLIPPGK--QFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 424 ~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~~ 471 (549)
..|..+++|+.|++++|++++..|... .++.+..+.+.+||+.|+|+.
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 778888899999999998887655321 356677778888888888763
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=412.65 Aligned_cols=441 Identities=19% Similarity=0.138 Sum_probs=334.5
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++|+|++|.+++..+..|.++++|++|++++|.+.+..|++|.++++|++|++++|.+++..|.. |.++++|++|++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~L 111 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS--FSGLTSLENLVA 111 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS--STTCTTCCEEEC
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh--cCCcccCCEEEc
Confidence 689999999999888889999999999999999999999999999999999999999999777777 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCC--CCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCc----EEEc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLT--KFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLN----ALNI 154 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~----~L~L 154 (549)
++|.++.++..... .+++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..+. .+.+|+ .|++
T Consensus 112 ~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 112 VETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ--FLRENPQVNLSLDM 188 (606)
T ss_dssp TTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH--HHHHCTTCCCEEEC
T ss_pred cCCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh--hhhccccccceeec
Confidence 99988877765544 7899999999999995 5789999999999999999999987777776 555444 7888
Q ss_pred cCCcCCCCCCccccccCCCCCccEEEccCCcCCC----------------------------------------------
Q 040238 155 SHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQG---------------------------------------------- 188 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~---------------------------------------------- 188 (549)
++|.+...++..+... +|+.|++++|.+.+
T Consensus 189 ~~n~l~~~~~~~~~~~----~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGI----KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp TTCCCCEECTTTTTTC----EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred cCCCcceeCcccccCc----eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 8888877665532211 27777777665431
Q ss_pred ------------CCC--CCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCc-----------------
Q 040238 189 ------------PLP--VPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ----------------- 237 (549)
Q Consensus 189 ------------~~~--~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----------------- 237 (549)
..| ..+++|+.+++.+|.+.. +| .+..+++|++|++++|.+ +.+|.
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGS 341 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSC
T ss_pred heeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCc
Confidence 000 013444445555544432 22 344444555555555544 23442
Q ss_pred ---chhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccc
Q 040238 238 ---CLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF 314 (549)
Q Consensus 238 ---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 314 (549)
.+.. .++|++|++++|.+++.. ..|..+..+++|++|++++|.+.+ .|..+..+++|++|++++|.+
T Consensus 342 ~~~~~~~-l~~L~~L~ls~n~l~~~~--------~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 342 ISFKKVA-LPSLSYLDLSRNALSFSG--------CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp EECCCCC-CTTCCEEECCSSCEEEEE--------ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEE
T ss_pred cchhhcc-CCCCCEEECcCCccCCCc--------chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCcc
Confidence 1112 225555555555554321 124456778888888888888775 457788888888888888888
Q ss_pred ccccC-CCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcc-cCchhhcCCCCCCEEEccCC
Q 040238 315 YGIIK-EPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS-VIPASIANLKGLQVLNLQNN 392 (549)
Q Consensus 315 ~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n 392 (549)
.+..+ ..+ ..+++|+.|++++|++.+..| ..+..+++| +.|++++|.+++ .+|..|..+++|++|++++|
T Consensus 412 ~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 412 KRVTEFSAF--LSLEKLLYLDISYTNTKIDFD-GIFLGLTSL-----NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp ESTTTTTTT--TTCTTCCEEECTTSCCEECCT-TTTTTCTTC-----CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CCccChhhh--hccccCCEEECcCCCCCccch-hhhcCCCCC-----CEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 87755 233 678889999999988876555 446667666 899999999987 47888999999999999999
Q ss_pred ccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCC-ccCCCccCCCCCCCCCCC
Q 040238 393 SLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFA-TFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 393 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~~~~~~n~~lc~~~~ 471 (549)
++++..|..|+.+++|++|++++|++++..|..|..+++|++|++++|+++...+....++ .++.+.+.+||+.|+++.
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9998888899999999999999999998889999999999999999999985433323333 367778888888887764
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-48 Score=409.03 Aligned_cols=433 Identities=18% Similarity=0.185 Sum_probs=344.2
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++|+|++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+.. +.++++|++|++
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~--~~~l~~L~~L~L 136 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP--LHNQKTLESLYL 136 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC--CTTCTTCCEEEC
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcch--hccCCcccEEEC
Confidence 789999999999999999999999999999999999999999999999999999999999665666 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCC-hhhcCCCCcc--EEEeecCcCCCCCCcccccc-------------
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLL--VLDLSDNRIQGKVPKWLLDP------------- 144 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~--~L~l~~n~l~~~~~~~~~~~------------- 144 (549)
++|.++.++..... .+++|++|++++|.++.++ ..+..+++|+ .|++++|.+++..|..+...
T Consensus 137 ~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 137 GSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp CSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH
T ss_pred CCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH
Confidence 99988876544443 4899999999999997774 5688888888 88888888876655544200
Q ss_pred ----------------------------------cC--CCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCC
Q 040238 145 ----------------------------------NM--QNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQG 188 (549)
Q Consensus 145 ----------------------------------~l--~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 188 (549)
.+ .+|+.|++++|.+....+..+ .... +|++|++++|.++.
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~-~~l~--~L~~L~l~~n~l~~ 292 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCFS--GLQELDLTATHLSE 292 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT-TTCT--TCSEEECTTSCCSC
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh-cccc--CCCEEeccCCccCC
Confidence 00 145666666666666555422 2222 37777777777763
Q ss_pred CCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcC--CCc
Q 040238 189 PLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI--PNT 263 (549)
Q Consensus 189 ~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~ 263 (549)
+|.. +++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++.......++|++|++++|.+++.. +..
T Consensus 293 -lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 293 -LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp -CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred -CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 3332 5677777777777776666677777777777777777665555543333446777777777666543 333
Q ss_pred ccc--------------cCCCCccccCCCCCcEEEccCCcCCCCcCc-ccCCCCCCCEEEccCcccccccCCCCCccCCC
Q 040238 264 FIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPS-WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFS 328 (549)
Q Consensus 264 ~~~--------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 328 (549)
+.. .+..|..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..+..+ ..++
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~ 449 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLP 449 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCT
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCC
Confidence 322 112255678899999999999999877654 48899999999999999988876655 7899
Q ss_pred CCceeeCCCCccccc-cC-hhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCC
Q 040238 329 KLRIIDLSNNIFIGT-LP-LKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLP 406 (549)
Q Consensus 329 ~L~~L~ls~n~l~~~-~~-~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 406 (549)
+|++|++++|++.+. ++ ...+..+++| +.|++++|.+++..|..|..+++|++|++++|++++..|+.+..++
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRL-----EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred CCCEEECCCCCCCccccccchhhccCCCc-----cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 999999999999763 22 2457777777 9999999999999999999999999999999999999999999999
Q ss_pred CCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 407 NLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 407 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
.| .|++++|++++..|..+..+++|+.|++++|++.|.++.
T Consensus 525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99 999999999988888899999999999999999998874
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=402.02 Aligned_cols=436 Identities=19% Similarity=0.202 Sum_probs=340.8
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++||+++|.+++..+.+|.++++|++|++++|.+.+..++.|.++++|++|++++|.+++..+.. |..+++|++|++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 107 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVA 107 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEEEC
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh--hcCccccccccc
Confidence 578999999999888889999999999999999999988899999999999999999998666666 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCC--CChhhcCCCCccEEEeecCcCCCCCCcccccccCCCC----cEEEc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK--FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL----NALNI 154 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L----~~L~L 154 (549)
++|.++.++..+.. .+++|++|++++|.++. +|..+.++++|++|++++|.+++..+..+. .+++| +.|++
T Consensus 108 ~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~~~~~L~l 184 (570)
T 2z63_A 108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLDL 184 (570)
T ss_dssp TTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH--HHHTCTTCCCEEEC
T ss_pred cccccccCCCcccc-ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc--chhccchhhhhccc
Confidence 99988888775544 78999999999999964 788999999999999999999877777777 77788 89999
Q ss_pred cCCcCCCCCCccccccCCCCCccEEEccCCcCC-----------------------------------------------
Q 040238 155 SHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQ----------------------------------------------- 187 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~----------------------------------------------- 187 (549)
++|.+....+..+.. . +|+.|++++|...
T Consensus 185 ~~n~l~~~~~~~~~~--~--~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 185 SLNPMNFIQPGAFKE--I--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp TTCCCCEECTTTTTT--C--EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred CCCCceecCHHHhcc--C--cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 999988877653322 1 3888888776321
Q ss_pred -----------CCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCC
Q 040238 188 -----------GPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQG 253 (549)
Q Consensus 188 -----------~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 253 (549)
+..+.. +++|+++++++|.+. .+|.++..+ +|++|++++|.+. .+|.. ..++|++|++++
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~ 334 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEES
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcC
Confidence 111111 344555555555444 344444444 5555555555554 33331 122455555555
Q ss_pred CccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc--CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCc
Q 040238 254 NNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF--PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLR 331 (549)
Q Consensus 254 n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 331 (549)
|.+.+..+ ...+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+
T Consensus 335 n~~~~~~~------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~ 399 (570)
T 2z63_A 335 NKGGNAFS------------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLE 399 (570)
T ss_dssp CBSCCBCC------------CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCC
T ss_pred Cccccccc------------cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc---ccccCCCC
Confidence 55443222 156889999999999988654 66788899999999999998877544 37889999
Q ss_pred eeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccc-cCCCcccCCCCCCCE
Q 040238 332 IIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ-GHIPSCLGNLPNLES 410 (549)
Q Consensus 332 ~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 410 (549)
.|++++|.+.+..+...+..++++ +.|++++|.+.+..|..|.++++|++|++++|.+. +.+|..+..+++|+.
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNL-----IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTC-----CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred EEEccCCccccccchhhhhcCCCC-----CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 999999998877776667777777 89999999999988999999999999999999997 568888999999999
Q ss_pred eeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040238 411 LDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 411 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
|++++|++++..|..|..+++|++|++++|++++..|.. ..++.++.+.+.+|++.|++|.
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999888999999999999999999999876643 4556677777888877776553
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-46 Score=393.29 Aligned_cols=416 Identities=18% Similarity=0.121 Sum_probs=324.7
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++|++++|.+++..|..|.++++|++|+|++|.+.+..|+.|+++++|++|++++|.+++..+.. +.++++|++|++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 135 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNV 135 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC--CTTCTTCCEEEC
T ss_pred CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccc--cCCCCCCCEEeC
Confidence 688999999998888888899999999999999988888888999999999999999888555555 788888888888
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCC---------------------------CccEEEeecCc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQY---------------------------HLLVLDLSDNR 132 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~---------------------------~L~~L~l~~n~ 132 (549)
++|.+...........+++|++|++++|.++.++. .+..+. +|+.|++++|.
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 88877653322222367888888888887755432 233222 44455555443
Q ss_pred CC----------------------------------------------------------CCCCcccccccCCCCcEEEc
Q 040238 133 IQ----------------------------------------------------------GKVPKWLLDPNMQNLNALNI 154 (549)
Q Consensus 133 l~----------------------------------------------------------~~~~~~~~~~~l~~L~~L~L 154 (549)
++ +..|. +. .+++|+.|++
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~--~l~~L~~L~l 292 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FH--CLANVSAMSL 292 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CG--GGTTCSEEEE
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cc--cCCCCCEEEe
Confidence 32 00111 22 3455666666
Q ss_pred cCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCC-CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCC
Q 040238 155 SHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV-PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG 233 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 233 (549)
++|.+..++ . .... ++|+.|++++|.+ +.+|. .+++|++|++++|...+.. .+..+++|++|++++|.+.+
T Consensus 293 ~~~~~~~l~-~--l~~~--~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 293 AGVSIKYLE-D--VPKH--FKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp ESCCCCCCC-C--CCTT--CCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred cCccchhhh-h--cccc--ccCCEEEcccccC-cccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 666655444 1 1122 2388888888887 44443 4778888888888655443 56688999999999999885
Q ss_pred c--CCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC-cccCCCCCCCEEEcc
Q 040238 234 L--LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP-SWLGTLPNLNVLILR 310 (549)
Q Consensus 234 ~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~ 310 (549)
. .+..+.... +|++|++++|.+++. |..+..+++|++|++++|++.+..+ ..+..+++|++|+++
T Consensus 365 ~~~~~~~~~~~~-~L~~L~L~~n~l~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 365 SGCCSYSDLGTN-SLRHLDLSFNGAIIM-----------SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EEECCHHHHCCS-CCCEEECCSCSEEEE-----------CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred CcchhhhhccCC-cccEeECCCCccccc-----------hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 5 366666555 899999999998753 4456789999999999999998877 688999999999999
Q ss_pred CcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEcc
Q 040238 311 SNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQ 390 (549)
Q Consensus 311 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 390 (549)
+|.+.+..+..+ .++++|++|++++|++.+...+..+..+++| +.|++++|.+++..|..|..+++|++|+++
T Consensus 433 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 433 YTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-----TFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp TSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHhhccCCCC-----CEEECCCCcCCccChhhhcccccCCEEECC
Confidence 999998876655 8899999999999999875444567777777 999999999999999999999999999999
Q ss_pred CCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCC-CCcEEecccCcCcccCCCC
Q 040238 391 NNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT-FLEFFNVSDNHLTGLIPPG 449 (549)
Q Consensus 391 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~~ 449 (549)
+|++++.+|..|..+++|+.|++++|+++ .+|..+..++ +|++|++++|++.|.++..
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 99999888999999999999999999999 6677788887 6999999999999998853
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=392.40 Aligned_cols=425 Identities=23% Similarity=0.220 Sum_probs=319.1
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.+|.++++++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+.. |.++++|++|+++
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--CQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH--HHHCTTCCEEECC
T ss_pred CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH--HhcccCcCEEECC
Confidence 46899999998 4566554 79999999999999988889999999999999999999777766 8999999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCC-hhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~ 160 (549)
+|.++.++...+. .+++|++|++++|.++.++ ..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 82 ~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 82 HNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV--QLENLQELLLSNNKIQ 158 (680)
T ss_dssp SSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS--CCTTCCEEECCSSCCC
T ss_pred CCccCccChhhhc-cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhc--ccccCCEEEccCCccc
Confidence 9998877765444 6899999999999998887 5789999999999999999988888887 8999999999999998
Q ss_pred CCCCccccccCCCCCccEEEccCCcCCCCCCCC------------------------------CCCcceeecccCCCCCc
Q 040238 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP------------------------------PPGTIHYLASNNSLTGE 210 (549)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~------------------------------~~~L~~L~l~~n~~~~~ 210 (549)
+..+..+. ....++|++|++++|.+.+..|.. .++|+.|++++|.+.+.
T Consensus 159 ~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 159 ALKSEELD-IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CBCHHHHG-GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred ccCHHHhh-ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 87655221 122234999999999998776642 26788999999999999
Q ss_pred CchhhhcCCC--CCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccC-------------------C
Q 040238 211 IPSWICNLNI--LESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKER-------------------R 269 (549)
Q Consensus 211 ~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-------------------~ 269 (549)
.|.++..++. |++|++++|.+.+..|..+..+. +|++|++++|.+++..+..|.... .
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred ChhHhhccCcCCCCEEECCCCCcCccCcccccCcc-cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 9999988755 99999999999977777776655 899999999999988877665411 2
Q ss_pred CCc----cccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc----------------------------cccc
Q 040238 270 IPR----SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI----------------------------FYGI 317 (549)
Q Consensus 270 l~~----~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~----------------------------l~~~ 317 (549)
+|. .+..+++|++|++++|.+.+..+..|..+++|++|++++|. +.+.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 333 56788999999999999998888888888888888777664 3333
Q ss_pred cCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccc--
Q 040238 318 IKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ-- 395 (549)
Q Consensus 318 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 395 (549)
.+.. +..+++|+.|++++|++.+.+|...|..++++ +.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 397 ~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 397 ESDA--FSWLGHLEVLDLGLNEIGQELTGQEWRGLENI-----FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp CTTT--TTTCTTCCEEECCSSCCEEECCSGGGTTCTTC-----CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred Chhh--hhCCCCCCEEeCCCCcCccccCcccccCcccc-----cEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 2322 36778888888888888877777777777766 66666666655544444444444444444444433
Q ss_pred cCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCc
Q 040238 396 GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 396 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
+.+|..|..+++|+.|++++|++++..+..|..+++|++|++++|+++
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 233444444444444444444444433344444444444444444444
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=404.10 Aligned_cols=449 Identities=22% Similarity=0.218 Sum_probs=347.2
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCcccc-CchhhcCCCCCCCeEecc
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTI-KLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~~~l~~L~~L~Ls 81 (549)
..|.++++++.+ |. -.+++++|+|++|.+.+..+..|.++++|++|++++|...+.+ +.. |.++++|++|+|+
T Consensus 8 ~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~--f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA--FRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT--TSSCTTCCEEECT
T ss_pred EEEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH--hcCCCCCCEEECC
Confidence 578888999844 54 4579999999999999999999999999999999999766566 445 8999999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCC-CChh--hcCCCCccEEEeecCcCCCCCC-cccccccCCCCcEEEccCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTK-FPNF--LQNQYHLLVLDLSDNRIQGKVP-KWLLDPNMQNLNALNISHN 157 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-l~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~L~~n 157 (549)
+|.++.+....+. .+++|++|++++|.++. +|.. +..+++|++|++++|.+++..+ ..+. .+++|++|++++|
T Consensus 82 ~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 82 SSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFSSN 158 (844)
T ss_dssp TCCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG--TCSSCCEEEEESS
T ss_pred CCcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh--hCCCCCEEECCCC
Confidence 9998887655444 78999999999999954 5554 8999999999999999987655 5677 9999999999999
Q ss_pred cCCCCCCccccccCCCCCccEEEccCCcCCCCCCCC---CC------CcceeecccCCCCCcCchhhhc-----------
Q 040238 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP---PP------GTIHYLASNNSLTGEIPSWICN----------- 217 (549)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~------~L~~L~l~~n~~~~~~~~~l~~----------- 217 (549)
.+....+..+ .....++|+.|+++.|.+.+..|.. ++ .|+.|++++|.+.+..+..+..
T Consensus 159 ~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 159 QIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred cCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 9988766532 2221134999999999999877654 22 3899999999887666554432
Q ss_pred ---------------------------CCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCC
Q 040238 218 ---------------------------LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI 270 (549)
Q Consensus 218 ---------------------------l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l 270 (549)
.++|+.|++++|.+.+..+..+..+. +|++|++++|.+++..+..
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~------- 309 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEA------- 309 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTT-------
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHH-------
Confidence 26799999999999876666665544 8999999999998766554
Q ss_pred CccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhh
Q 040238 271 PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFL 350 (549)
Q Consensus 271 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 350 (549)
+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.+.-. +.
T Consensus 310 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~i~~---~~ 381 (844)
T 3j0a_A 310 ---FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF--KFLEKLQTLDLRDNALTTIHF---IP 381 (844)
T ss_dssp ---TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS--CSCCCCCEEEEETCCSCCCSS---CC
T ss_pred ---hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh--cCCCCCCEEECCCCCCCcccC---CC
Confidence 4788999999999999998889999999999999999999988766555 788999999999998764211 00
Q ss_pred ccccc-------------------------------------cccccceEEccCCcCcccCch-hhcCCCCCCEEEccCC
Q 040238 351 CWNAM-------------------------------------KIVNTTGIILSNNSFDSVIPA-SIANLKGLQVLNLQNN 392 (549)
Q Consensus 351 ~l~~l-------------------------------------~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n 392 (549)
.+..+ ...+++.|++++|.+++..+. .+..+++|++|++++|
T Consensus 382 ~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp SCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred CcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 00000 112336677777776654333 3455677777777777
Q ss_pred ccc-----cCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCC---
Q 040238 393 SLQ-----GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNS--- 464 (549)
Q Consensus 393 ~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~--- 464 (549)
.++ +..++.|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..|.... ..++.+.+.+|.
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLA 540 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCC
T ss_pred ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCC
Confidence 775 33446688999999999999999988999999999999999999999977654332 344433332221
Q ss_pred ------------CCCCCCCCCCCCCC
Q 040238 465 ------------GLCGRPLSKGCESD 478 (549)
Q Consensus 465 ------------~lc~~~~~~~c~~~ 478 (549)
.+.++|+.|.|...
T Consensus 541 ~~~~~~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 541 PNPDVFVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CCSCCCSSCCEEEEEEECCCCSSSCC
T ss_pred CChhHhCCcCEEEecCCCcccccccH
Confidence 23467888999753
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=383.36 Aligned_cols=414 Identities=17% Similarity=0.146 Sum_probs=255.1
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++||+++|.+++..|..|.++++|++|++++|.+.+..|+.|.++++|++|++++|.+++..+.. |.++++|++|++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L 105 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW--FGPLSSLKYLNL 105 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH--HTTCTTCCEEEC
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH--hccCCCCcEEEC
Confidence 689999999999888999999999999999999999999999999999999999999999666555 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCC-CCCCC-hhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCN-LTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF 158 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~-l~~l~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 158 (549)
++|.++.++.......+++|++|++++|. ++.+| ..+..+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK--SIRDIHHLTLHLSE 183 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT--TCSEEEEEEEECSB
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh--ccccCceEecccCc
Confidence 99988866543334478999999999998 57777 4789999999999999999988888887 88888888888887
Q ss_pred CCCCCCccccccCCCCCccEEEccCCcCCCCC------CCCCCCcceeecccCCCCCcCchhh----hcCCC--------
Q 040238 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPL------PVPPPGTIHYLASNNSLTGEIPSWI----CNLNI-------- 220 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~~~~L~~L~l~~n~~~~~~~~~l----~~l~~-------- 220 (549)
+...+.. ..... ++|++|++++|.+.+.. ....++++.|++.+|.+.+..+..+ ..++.
T Consensus 184 ~~~~~~~-~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 184 SAFLLEI-FADIL--SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp STTHHHH-HHHST--TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred ccccchh-hHhhc--ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 6544332 11122 33888888888887632 1225666666666665554322222 22333
Q ss_pred ---------------------------------------------------CCeEeCcCCcCCCcCCcchhcCCCCCCee
Q 040238 221 ---------------------------------------------------LESLVLSHNNLSGLLPQCLGNSSDELSVL 249 (549)
Q Consensus 221 ---------------------------------------------------L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 249 (549)
|++|++++|.+. .+|..++...++|++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFL 339 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEE
Confidence 444444444443 3343333222245555
Q ss_pred ecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC--cccCCCCCCCEEEccCcccccccCCCCCccCC
Q 040238 250 DLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP--SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGF 327 (549)
Q Consensus 250 ~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 327 (549)
++++|.+++..+.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+..++ .. +..+
T Consensus 340 ~Ls~N~l~~~~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~--~~~~ 409 (549)
T 2z81_A 340 DLSENLMVEEYLKN-------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DS--CQWP 409 (549)
T ss_dssp ECCSSCCCHHHHHH-------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC-SC--CCCC
T ss_pred EccCCccccccccc-------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC-hh--hccc
Confidence 55555444322110 0112344455555555555543221 23444455555555555544321 11 1344
Q ss_pred CCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCC
Q 040238 328 SKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPN 407 (549)
Q Consensus 328 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 407 (549)
++|++|++++|++. .+|.... + +++.|++++|++++.. ..+++|++|++++|+++ .+|+ ...+++
T Consensus 410 ~~L~~L~Ls~N~l~-~l~~~~~---~-----~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~ 474 (549)
T 2z81_A 410 EKMRFLNLSSTGIR-VVKTCIP---Q-----TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPV 474 (549)
T ss_dssp TTCCEEECTTSCCS-CCCTTSC---T-----TCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTT
T ss_pred ccccEEECCCCCcc-cccchhc---C-----CceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCcc
Confidence 45555555555443 1221110 1 2255555555554432 24455555555555554 3333 234455
Q ss_pred CCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 408 LESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 408 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
|+.|++++|++++..|..+..+++|+.|++++|++.|.+|
T Consensus 475 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 5555555555554444445555555555555555555544
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-45 Score=386.94 Aligned_cols=423 Identities=21% Similarity=0.250 Sum_probs=333.2
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCC------c---------------------------ccccccc----
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVS------G---------------------------QITSSLR---- 44 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~------~---------------------------~~~~~~~---- 44 (549)
+.|+|++|.++|.+|++|+++++|++|+|++|.+. + ..+..+.
T Consensus 84 ~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~ 163 (636)
T 4eco_A 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163 (636)
T ss_dssp EEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHH
Confidence 57999999999999999999999999999999651 1 0011111
Q ss_pred ---------------CCCCCCEEeCC--CCcCccccCchhhcCCCCCCCeEeccCCccce------------------ee
Q 040238 45 ---------------NLSQLFFLDLA--KNSYRGTIKLDVLLTSWKNLEFLALSLNRLSV------------------LT 89 (549)
Q Consensus 45 ---------------~l~~L~~L~Ls--~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------~~ 89 (549)
....++.+.+. +|++++ +|.. +.++++|++|++++|.++. ++
T Consensus 164 ~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHhhcCccccccccccccchhhhhhccccCCCcc-CCHH--HhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 11223333332 577887 7877 8999999999999998776 44
Q ss_pred ccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCc-CCC-CCCcccccccC------CCCcEEEccCCcCC
Q 040238 90 KATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNR-IQG-KVPKWLLDPNM------QNLNALNISHNFLT 160 (549)
Q Consensus 90 ~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~l------~~L~~L~L~~n~~~ 160 (549)
.......+++|++|++++|.+ +.+|..+.++++|++|++++|+ +++ .+|..+. .+ ++|++|++++|++.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~--~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ--ALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH--HHHHSGGGGTCCEEECCSSCCS
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH--hhhccccCCCCCEEECCCCcCC
Confidence 332211588999999999987 7889999999999999999998 887 7888776 55 89999999999998
Q ss_pred CCCCccccccCCCCCccEEEccCCcCCCCCCCC--CCCcceeecccCCCCCcCchhhhcCCC-CCeEeCcCCcCCCcCCc
Q 040238 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP--PPGTIHYLASNNSLTGEIPSWICNLNI-LESLVLSHNNLSGLLPQ 237 (549)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~ 237 (549)
.++....+.... +|+.|++++|.+.+.+|.. +++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|.
T Consensus 319 ~ip~~~~l~~l~--~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 TFPVETSLQKMK--KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp SCCCHHHHTTCT--TCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred ccCchhhhccCC--CCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 655411123333 3999999999999888832 678999999999998 88888999999 999999999999 7887
Q ss_pred chhcC-CCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccccc
Q 040238 238 CLGNS-SDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYG 316 (549)
Q Consensus 238 ~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 316 (549)
.+... .++|++|++++|.+++..|..+.. .......+++|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~---~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDP---LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCT---TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcc---cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence 66543 237999999999999887765520 01111256799999999999996555566779999999999999986
Q ss_pred ccCCCCC-----ccCCCCCceeeCCCCccccccChhhh-hccccccccccceEEccCCcCcccCchhhcCCCCCCEEEc-
Q 040238 317 IIKEPRT-----DCGFSKLRIIDLSNNIFIGTLPLKSF-LCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNL- 389 (549)
Q Consensus 317 ~~~~~~~-----~~~l~~L~~L~ls~n~l~~~~~~~~~-~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l- 389 (549)
+....+. ..++++|+.|++++|++. .+|...+ ..+++| +.|++++|.+++ +|..+..+++|++|++
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-----~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL-----VGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC-----CEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc-----CEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 5444331 112339999999999998 6776544 367777 999999999998 7888999999999999
Q ss_pred -----cCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccC
Q 040238 390 -----QNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLI 446 (549)
Q Consensus 390 -----~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 446 (549)
++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.|++++|++.+.-
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 56778889999999999999999999999 47887765 79999999999998654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=373.61 Aligned_cols=419 Identities=19% Similarity=0.160 Sum_probs=265.6
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
++||+++|.++ .+|..+. ++|++|++++|.+.+..|+.|.++++|++|++++|.+++..|.. |.++++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV--FKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG--GTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH--hhcccCCCEEecC
Confidence 58999999999 5666665 89999999999999988899999999999999999999777777 8999999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCC--CChhhcCCCCccEEEeecCcCCCCCCcccccccCCCC--cEEEccCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTK--FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL--NALNISHN 157 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~L~~n 157 (549)
+|.++.++.. .+++|++|++++|.++. +|..+..+++|++|++++|.+++ ..+. .+++| +.|++++|
T Consensus 78 ~N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~--~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 78 HNKLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL--PIAHLNISKVLLVLG 148 (520)
T ss_dssp SSCCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG--GGTTSCEEEEEEEEC
T ss_pred CCceeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcc--ccccceeeEEEeecc
Confidence 9999987766 58999999999999965 67899999999999999999875 4455 77888 99999999
Q ss_pred cC--CCCCCccccccCCCCCccEEEccCCcCCCCCCCC----CCCcceeecccCC-------------------------
Q 040238 158 FL--TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP----PPGTIHYLASNNS------------------------- 206 (549)
Q Consensus 158 ~~--~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~L~~L~l~~n~------------------------- 206 (549)
.+ .+..+..+. .... ....+++++|.+.+.++.. +++|+.+++++|.
T Consensus 149 ~l~~~~~~~~~l~-~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 149 ETYGEKEDPEGLQ-DFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp TTTTSSCCTTTTT-TCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred ccccccccccccc-cccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 88 444333211 1110 1224455555544433321 3344444444332
Q ss_pred -----CCCcCchhhh---cCCCCCeEeCcCCcCCCcCCcchh----cCCCCCCeeecCCCccCCcCC-Ccccc-------
Q 040238 207 -----LTGEIPSWIC---NLNILESLVLSHNNLSGLLPQCLG----NSSDELSVLDLQGNNFFGTIP-NTFIK------- 266 (549)
Q Consensus 207 -----~~~~~~~~l~---~l~~L~~L~Ls~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~-~~~~~------- 266 (549)
+.+..+..+. .+++|++|++++|.+.+.+|..++ ...+.|+.+++++|.+ .+| ..+..
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L 304 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNI 304 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCC
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCce
Confidence 2211111110 123566666666666666666552 1222555555555555 222 11000
Q ss_pred ------cCCC-Ccc-ccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCC
Q 040238 267 ------ERRI-PRS-LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNN 338 (549)
Q Consensus 267 ------~~~l-~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 338 (549)
...+ +.. ...+++|++|++++|++++..|..+..+++|++|++++|.+.++...+..+..+++|++|++++|
T Consensus 305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 0000 000 13456666666666666665566666666666666666666543211112245666666666666
Q ss_pred ccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcc
Q 040238 339 IFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418 (549)
Q Consensus 339 ~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 418 (549)
++.+.+|...+..++.+ +.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|++
T Consensus 385 ~l~~~l~~~~~~~l~~L-----~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSL-----LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp CCBCCGGGCSCCCCTTC-----CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred cCCcccccchhccCccC-----CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 66655555545544444 6666666666655544432 56666666666666 5555555666666666666666
Q ss_pred cccCCc-CccCCCCCcEEecccCcCcccCC
Q 040238 419 SGQIPQ-QLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 419 ~~~~~~-~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+. +|. .+..+++|++|++++|+++|.++
T Consensus 457 ~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 457 KS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred Cc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 63 333 35666666666666666666554
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=377.66 Aligned_cols=420 Identities=18% Similarity=0.184 Sum_probs=346.9
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++|||++|.+++..+..|.++++|++|++++|.+.+..++.|.++++|++|++++|.+++..+.. +.++++|++|++
T Consensus 54 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~l~~L~~L~L 131 (570)
T 2z63_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNV 131 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS--CTTCTTCCEEEC
T ss_pred ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcc--ccccccccEEec
Confidence 689999999999888889999999999999999999998899999999999999999998555545 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCC-hhhcCCCCc----cEEEeecCcCCCCCCcccccccCCCCcEEEcc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHL----LVLDLSDNRIQGKVPKWLLDPNMQNLNALNIS 155 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~ 155 (549)
++|.++.+........+++|++|++++|.++.++ ..+..+++| +.|++++|.+++..+..+. .+ +|+.|+++
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~-~L~~L~l~ 208 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EI-RLHKLTLR 208 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TC-EEEEEEEE
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhc--cC-cceeEecc
Confidence 9998876432222336899999999999997765 467777777 8999999999877777775 33 78888887
Q ss_pred CCcCC----------------------------------------------------------CCCCccccccCCCCCcc
Q 040238 156 HNFLT----------------------------------------------------------GFDQHLVVLPANKGDLL 177 (549)
Q Consensus 156 ~n~~~----------------------------------------------------------~~~~~~~~~~~~~~~L~ 177 (549)
+|... +..+. .... .++|+
T Consensus 209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~--l~~L~ 285 (570)
T 2z63_A 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID-LFNC--LTNVS 285 (570)
T ss_dssp SCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT-TTGG--GTTCS
T ss_pred cccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh-hhcC--cCccc
Confidence 76221 11111 1111 23499
Q ss_pred EEEccCCcCCCCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCC
Q 040238 178 TFDLSSNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGN 254 (549)
Q Consensus 178 ~L~L~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n 254 (549)
.|++++|.+.+ +|.. . +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ...++|++|++++|
T Consensus 286 ~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n 357 (570)
T 2z63_A 286 SFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRN 357 (570)
T ss_dssp EEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSS
T ss_pred EEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCC
Confidence 99999998875 4432 5 9999999999998 4554 4789999999999998866665 33458999999999
Q ss_pred ccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceee
Q 040238 255 NFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334 (549)
Q Consensus 255 ~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (549)
.+++.. ..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+.. .+..+++|++|+
T Consensus 358 ~l~~~~--------~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~ 427 (570)
T 2z63_A 358 GLSFKG--------CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLD 427 (570)
T ss_dssp CCBEEE--------EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-TTTTCTTCCEEE
T ss_pred ccCccc--------cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-hhhcCCCCCEEe
Confidence 987542 1134567899999999999999865554 899999999999999998775422 237899999999
Q ss_pred CCCCccccccChhhhhccccccccccceEEccCCcCc-ccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeC
Q 040238 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD-SVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDL 413 (549)
Q Consensus 335 ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 413 (549)
+++|.+.+..| ..+..+++| +.|++++|.++ +.+|..|..+++|++|++++|++++..|..|..+++|+.|++
T Consensus 428 l~~n~l~~~~~-~~~~~l~~L-----~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 428 ISHTHTRVAFN-GIFNGLSSL-----EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CTTSCCEECCT-TTTTTCTTC-----CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcCCcccccch-hhhhcCCcC-----cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 99999887655 557777777 99999999998 578899999999999999999999888999999999999999
Q ss_pred CCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCC
Q 040238 414 SNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQF 452 (549)
Q Consensus 414 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 452 (549)
++|++++..|..|..+++|+.|++++|+++|.+|....+
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999888888999999999999999999999865433
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=384.50 Aligned_cols=419 Identities=19% Similarity=0.217 Sum_probs=329.3
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEc-cCCcCCcccccc--------------------------------------
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHI-AKCNVSGQITSS-------------------------------------- 42 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~n~~~~~~~~~-------------------------------------- 42 (549)
+.|+|++|.++|.+|++|+++++|++|+| ++|.+.+..+-.
T Consensus 326 ~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~ 405 (876)
T 4ecn_A 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405 (876)
T ss_dssp EEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHH
Confidence 57999999999999999999999999999 788765542111
Q ss_pred -------------ccCCCCCCEEeCCC--CcCccccCchhhcCCCCCCCeEeccCCccce------------------ee
Q 040238 43 -------------LRNLSQLFFLDLAK--NSYRGTIKLDVLLTSWKNLEFLALSLNRLSV------------------LT 89 (549)
Q Consensus 43 -------------~~~l~~L~~L~Ls~--n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------~~ 89 (549)
......++.+.+.. |.+++ +|.. +.++++|++|+|++|.++. ++
T Consensus 406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~--l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA--IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHhhhCccccccccccccchhhceeccccCcccc-hhHH--HhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 01122344444443 77886 7877 8999999999999998876 33
Q ss_pred ccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCc-CCC-CCCcccccccC-------CCCcEEEccCCcC
Q 040238 90 KATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNR-IQG-KVPKWLLDPNM-------QNLNALNISHNFL 159 (549)
Q Consensus 90 ~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~l-------~~L~~L~L~~n~~ 159 (549)
.......+++|++|++++|.+ +.+|..+.++++|++|++++|+ +++ .+|..+. .+ ++|+.|++++|.+
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~--~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT--RLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH--HHHHCTTTTTTCCEEECCSSCC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH--hhhhcccccCCccEEEeeCCcC
Confidence 332212689999999999986 8899999999999999999998 887 6777665 44 4999999999999
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCC--CCCcceeecccCCCCCcCchhhhcCCC-CCeEeCcCCcCCCcCC
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP--PPGTIHYLASNNSLTGEIPSWICNLNI-LESLVLSHNNLSGLLP 236 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~ 236 (549)
..++....+.... +|+.|++++|.+. .+|.. +++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|
T Consensus 561 ~~ip~~~~l~~L~--~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 561 EEFPASASLQKMV--KLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp CBCCCHHHHTTCT--TCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred CccCChhhhhcCC--CCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 8555411122333 3999999999998 66632 788999999999999 88888999999 999999999998 778
Q ss_pred cchhcCC-CCCCeeecCCCccCCcCCCcccccCCCCcccc--CCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc
Q 040238 237 QCLGNSS-DELSVLDLQGNNFFGTIPNTFIKERRIPRSLI--NCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI 313 (549)
Q Consensus 237 ~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 313 (549)
..+.... ++|+.|++++|.+++.+|.. +..+. .+++|++|++++|.++...+..+..+++|+.|++++|.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l-------~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNI-------SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSC-------SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccc-------hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 7665443 24999999999998866532 22223 34589999999999995444445589999999999999
Q ss_pred cccccCCCCC-----ccCCCCCceeeCCCCccccccChhhh-hccccccccccceEEccCCcCcccCchhhcCCCCCCEE
Q 040238 314 FYGIIKEPRT-----DCGFSKLRIIDLSNNIFIGTLPLKSF-LCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVL 387 (549)
Q Consensus 314 l~~~~~~~~~-----~~~l~~L~~L~ls~n~l~~~~~~~~~-~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L 387 (549)
+..+....+. ..++++|+.|++++|++. .+|...+ ..+++| +.|+|++|.+++ +|..+..+++|+.|
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-----~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-----SNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-----CEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-----CEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 9865444331 113349999999999988 6776543 366767 999999999998 68888999999999
Q ss_pred EccC------CccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 388 NLQN------NSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 388 ~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++...-+
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 9976 788889999999999999999999999 58888765 699999999999876543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=368.59 Aligned_cols=423 Identities=21% Similarity=0.186 Sum_probs=270.4
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++|||++|.|+++.+.+|.++++|++|+|++|.+.++.+++|.++++|++|+|++|++++..+.. |.++++|++|++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~--f~~L~~L~~L~L 131 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVA 131 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG--GTTCTTCCEEEC
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH--hcCCCCCCEEEC
Confidence 589999999999888889999999999999999999999999999999999999999998544444 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCC--CChhhcCCCCccEEEeecCcCCCCCCcccccccCCCC----cEEEc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK--FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL----NALNI 154 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L----~~L~L 154 (549)
++|.++.++...+. .+++|++|++++|.++. +|..+..+++|++|++++|++++..+..+. .+.++ ..+++
T Consensus 132 s~N~l~~l~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~--~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 132 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLDL 208 (635)
T ss_dssp TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH--HHHTCTTCCCEEEC
T ss_pred CCCcCCCCChhhhh-cCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc--chhhhhhhhhhhhc
Confidence 99998887765544 68999999999999954 577889999999999999999877777665 43332 34556
Q ss_pred cCCcCCCCCCccccccC---------------------------------------------------------------
Q 040238 155 SHNFLTGFDQHLVVLPA--------------------------------------------------------------- 171 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~--------------------------------------------------------------- 171 (549)
+.|.+..+.+..+....
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 66555433222110000
Q ss_pred ---------------CCCCccEEEccCCcCCCCCCC-CCCCcceeecccCCCCCcCch-------------------hhh
Q 040238 172 ---------------NKGDLLTFDLSSNNLQGPLPV-PPPGTIHYLASNNSLTGEIPS-------------------WIC 216 (549)
Q Consensus 172 ---------------~~~~L~~L~L~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~-------------------~l~ 216 (549)
...+++.+++..+.+....+. ....++.|++.+|.+....+. ...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 000011111111111110000 133455555555544433221 112
Q ss_pred cCCCCCeEeCcCCcCCC--cCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 217 NLNILESLVLSHNNLSG--LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
.+++|+.|++++|.+.. ..+....... +|+++++..+..... +..+..+++|+.++++.+......
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~~~~~~~~~~-----------~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLDLSFNGVITM-----------SSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCS-CCCEEECCSCSEEEE-----------CSCCTTCTTCCEEECTTSEEESTT
T ss_pred cccccccchhhccccccccccccchhhhh-hhhhhhccccccccc-----------cccccccccccchhhhhccccccc
Confidence 34444555555444431 1222222222 445555544443321 223345666666666666554333
Q ss_pred C-cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCccc
Q 040238 295 P-SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV 373 (549)
Q Consensus 295 ~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~ 373 (549)
+ ..+..+++++.++++.|.+.+..+..+ ..++.++.|++++|++.+.++++.|..+++| +.|+|++|++++.
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-----~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNL-----TFLDLSQCQLEQL 509 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----CEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccc--ccchhhhhhhhhhcccccccCchhhhhcccc-----CEEECCCCccCCc
Confidence 2 345566667777777776666655444 5666777777777665544444555555555 6677777777766
Q ss_pred CchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCC-CCCcEEecccCcCcccCC
Q 040238 374 IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVEL-TFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 374 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p 447 (549)
.|..|.++++|++|+|++|++++..+..|+++++|+.|+|++|++++..|..|..+ ++|++|++++|+|.|.|.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 66667777777777777777766666666777777777777777776666666666 467777777777776665
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=364.61 Aligned_cols=409 Identities=19% Similarity=0.201 Sum_probs=302.9
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+++|+++|.+++ +|..+. ++|++|++++|.+.+..++.|.++++|++|++++|.+++..+.. |..+++|++|+++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV--FLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT--TTTCTTCCEEECT
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH--hCCCCCCCEEECC
Confidence 589999999995 565554 89999999999999998899999999999999999999777766 8999999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCCCcccccccCCCC--cEEEccCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL--NALNISHN 157 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~L~~n 157 (549)
+|.++.++.. .+++|++|++++|.++.++ ..+.++++|++|++++|.+++. .+. .+++| +.|++++|
T Consensus 109 ~N~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~--~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 109 HNRLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLL--PVAHLHLSCILLDLV 179 (562)
T ss_dssp TSCCCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTG--GGTTSCEEEEEEEES
T ss_pred CCcCCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chh--hhhhceeeEEEeecc
Confidence 9999977665 5899999999999997654 7899999999999999999753 343 55666 99999999
Q ss_pred cC--CCCCCccccccCCCCCccEEEccCCcCCCCCCCC----CCCcceeecccC--------------------------
Q 040238 158 FL--TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP----PPGTIHYLASNN-------------------------- 205 (549)
Q Consensus 158 ~~--~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~L~~L~l~~n-------------------------- 205 (549)
.+ .+..+..+.. .... ...++++.|.+.+.++.. +++|+.+++++|
T Consensus 180 ~l~~~~~~~~~l~~-l~~~-~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 180 SYHIKGGETESLQI-PNTT-VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp SCCCCSSSCCEEEE-CCEE-EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccCcccccc-cCcc-eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 88 5544432211 1100 112334444433322211 222333333222
Q ss_pred --CCCCc----CchhhhcCCCCCeEeCcCCcCCCcCCcchh----------------------------cC--CCCCCee
Q 040238 206 --SLTGE----IPSWICNLNILESLVLSHNNLSGLLPQCLG----------------------------NS--SDELSVL 249 (549)
Q Consensus 206 --~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----------------------------~~--~~~L~~L 249 (549)
.+.+. .+.. ...++|++|++++|.+.+.+|..++ .. ..+|++|
T Consensus 258 ~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 258 HIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred CCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 11110 0000 1122455555555555544444331 11 1247777
Q ss_pred ecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCC
Q 040238 250 DLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSK 329 (549)
Q Consensus 250 ~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 329 (549)
++++|.+..... ...+++|++|++++|.+++..|..+..+++|++|++++|.+.++...+..+..+++
T Consensus 337 ~l~~n~~~~~~~------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 337 SISDTPFIHMVC------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404 (562)
T ss_dssp EEESSCCCCCCC------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred EccCCCcccccC------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence 777777643210 15688999999999999988888999999999999999999875432333478999
Q ss_pred CceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCC
Q 040238 330 LRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLE 409 (549)
Q Consensus 330 L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 409 (549)
|++|++++|++.+.+|...+..++.+ +.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~ 476 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESI-----LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ 476 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTC-----CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCS
T ss_pred CCEEECCCCcCCCccChhhhcCcccC-----CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCC
Confidence 99999999999887888778777777 9999999999877665543 79999999999998 6777677999999
Q ss_pred EeeCCCCcccccCCcC-ccCCCCCcEEecccCcCcccCCC
Q 040238 410 SLDLSNNKFSGQIPQQ-LVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 410 ~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
.|++++|+++ .+|.. +..+++|+.|++++|++.|.||.
T Consensus 477 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 477 ELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp EEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred EEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9999999999 45554 88999999999999999998874
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=370.89 Aligned_cols=419 Identities=19% Similarity=0.202 Sum_probs=336.1
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCc------c------ccC---------------------chh--
Q 040238 23 RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR------G------TIK---------------------LDV-- 67 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~---------------------~~~-- 67 (549)
.+++.|+|++|++.+.+|..|+++++|++|++++|.+. + .+| ...
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999999999999999999999999999762 1 000 000
Q ss_pred ---------------hcCCCCCCCeEecc--CCccceeeccCCCcCCCCCCEEEccCCCCCC------------------
Q 040238 68 ---------------LLTSWKNLEFLALS--LNRLSVLTKATSNTTSQKLKYIGLRSCNLTK------------------ 112 (549)
Q Consensus 68 ---------------~~~~l~~L~~L~Ls--~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------ 112 (549)
.......++.+.+. +|.++.++.. ...+++|++|++++|.++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH--HhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 00111122223332 4555554332 2278999999999999977
Q ss_pred CChhhc--CCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc-CCC-CCCccccccC----CCCCccEEEccCC
Q 040238 113 FPNFLQ--NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF-LTG-FDQHLVVLPA----NKGDLLTFDLSSN 184 (549)
Q Consensus 113 l~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~~~~~~----~~~~L~~L~L~~n 184 (549)
+|..+. ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ ..+... ... ..++|++|++++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT--TCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHh--cCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCC
Confidence 999988 999999999999999999999998 99999999999998 775 333211 111 1133999999999
Q ss_pred cCCCCCCC-----CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCC-CCeeecCCCccCC
Q 040238 185 NLQGPLPV-----PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDE-LSVLDLQGNNFFG 258 (549)
Q Consensus 185 ~l~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~ 258 (549)
.++ .+|. .+++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+. + |++|++++|.++
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK- 390 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-
Confidence 999 6776 38899999999999998999 8999999999999999999 8888887776 6 999999999997
Q ss_pred cCCCcccccCCCCccccC--CCCCcEEEccCCcCCCCcCcccC-------CCCCCCEEEccCcccccccCCCCCccCCCC
Q 040238 259 TIPNTFIKERRIPRSLIN--CSKLEFLGLGNNQISDTFPSWLG-------TLPNLNVLILRSNIFYGIIKEPRTDCGFSK 329 (549)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~--~~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 329 (549)
.+|.. +.. +++|++|++++|.+.+..|..+. .+++|++|++++|.+..+....+ ..+++
T Consensus 391 ~lp~~----------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~l~~ 458 (636)
T 4eco_A 391 YIPNI----------FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF--STGSP 458 (636)
T ss_dssp SCCSC----------CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH--HTTCC
T ss_pred ccchh----------hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH--ccCCC
Confidence 44443 344 34899999999999998888888 78899999999999986543322 56899
Q ss_pred CceeeCCCCccccccChhhhhcccc-c-cccccceEEccCCcCcccCchhhc--CCCCCCEEEccCCccccCCCcccCCC
Q 040238 330 LRIIDLSNNIFIGTLPLKSFLCWNA-M-KIVNTTGIILSNNSFDSVIPASIA--NLKGLQVLNLQNNSLQGHIPSCLGNL 405 (549)
Q Consensus 330 L~~L~ls~n~l~~~~~~~~~~~l~~-l-~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l 405 (549)
|++|++++|++. .+|...+..... + ...+++.|++++|.++ .+|..+. .+++|++|++++|++++ +|..+..+
T Consensus 459 L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l 535 (636)
T 4eco_A 459 LSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535 (636)
T ss_dssp CSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred CCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcC
Confidence 999999999998 788776654430 0 0013499999999999 5677776 99999999999999996 88899999
Q ss_pred CCCCEeeC------CCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCC
Q 040238 406 PNLESLDL------SNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCG 468 (549)
Q Consensus 406 ~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~ 468 (549)
++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|... .+.++.+.+.+|+..|-
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence 99999999 56888889999999999999999999999 5777653 36777888888887764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=365.20 Aligned_cols=441 Identities=20% Similarity=0.209 Sum_probs=293.3
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
+.|.+++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..+.. |..+++|++|++++
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA--FYSLGSLEHLDLSD 83 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTT
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh--ccccccCCEEECCC
Confidence 5688889998 4555554 79999999999999998999999999999999999999776666 89999999999999
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCCCC--CChhhcCCCCccEEEeecCcCCCCCC-cccccccCCCCcEEEccCCcC
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNLTK--FPNFLQNQYHLLVLDLSDNRIQGKVP-KWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~L~~n~~ 159 (549)
|.++..+...+. .+++|++|++++|.++. +|..+..+++|++|++++|.+.+.+| ..+. .+++|++|++++|.+
T Consensus 84 n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 84 NHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA--GLTSLNELEIKALSL 160 (549)
T ss_dssp SCCCSCCHHHHT-TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEETTC
T ss_pred CccCccCHHHhc-cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhh--cccccCeeeccCCcc
Confidence 988877654333 68999999999999964 56789999999999999998544554 5777 899999999999999
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCC---CCCCCcceeecccCCCCCcC--c-hhhhcCCCCCeEeCcCCcCCC
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLP---VPPPGTIHYLASNNSLTGEI--P-SWICNLNILESLVLSHNNLSG 233 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~L~~L~l~~n~~~~~~--~-~~l~~l~~L~~L~Ls~n~l~~ 233 (549)
.+..+.. ..... +|++|++++|.+..... ..+++|++|++++|.+.+.. + .....+++|++|++++|.+.+
T Consensus 161 ~~~~~~~-l~~l~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 161 RNYQSQS-LKSIR--DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp CEECTTT-TTTCS--EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccChhh-hhccc--cCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 8765552 23333 49999999998753221 13789999999999998742 2 223457899999999998775
Q ss_pred cCCcchh---cCCCCCCeeecCCCccCCcCCC---------cccc-----------------------------------
Q 040238 234 LLPQCLG---NSSDELSVLDLQGNNFFGTIPN---------TFIK----------------------------------- 266 (549)
Q Consensus 234 ~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~---------~~~~----------------------------------- 266 (549)
..+..+. ...++|+.+++++|.+.+...- .+..
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 4433322 1123567777777665542110 0000
Q ss_pred ----cCCCCccc-cCCCCCcEEEccCCcCCCCcC---cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCC
Q 040238 267 ----ERRIPRSL-INCSKLEFLGLGNNQISDTFP---SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNN 338 (549)
Q Consensus 267 ----~~~l~~~l-~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 338 (549)
...+|..+ ..+++|++|++++|++.+..| ..++.+++|++|++++|.+++..+....+..+++|++|++++|
T Consensus 318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 00122222 234444444444444443322 1233444445555554444433210011234444555555555
Q ss_pred ccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcc
Q 040238 339 IFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418 (549)
Q Consensus 339 ~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 418 (549)
++. .+|.. +..+++| +.|++++|.+++. |..+ .++|++|++++|++++. +..+++|++|++++|++
T Consensus 398 ~l~-~lp~~-~~~~~~L-----~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 398 TFH-PMPDS-CQWPEKM-----RFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKL 463 (549)
T ss_dssp CCC-CCCSC-CCCCTTC-----CEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCC
T ss_pred CCc-cCChh-hcccccc-----cEEECCCCCcccc-cchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCcc
Confidence 443 23321 2222222 4555555554432 1111 13555555555555532 24788999999999999
Q ss_pred cccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCC
Q 040238 419 SGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+ .+|. ...+++|++|++++|++++..|.. ..+..++.+.+.+|++.|++|
T Consensus 464 ~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 464 K-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp S-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred C-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8 6665 467899999999999999877753 456677778888888888765
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=337.47 Aligned_cols=396 Identities=19% Similarity=0.180 Sum_probs=279.6
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.++.+++.++ .+|. + .++|++|+|++|.+.+..|..|.++++|++|++++|.+.+.++.. .|..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT-TTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc-cccccccCCEEeCC
Confidence 35777888887 4454 3 278999999999999988999999999999999999997666543 48999999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCC-CChh--hcCCCCccEEEeecCcCCCCCCcc-cccccCCCCcEEEccCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTK-FPNF--LQNQYHLLVLDLSDNRIQGKVPKW-LLDPNMQNLNALNISHN 157 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-l~~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n 157 (549)
+|.++......+. .+++|++|++++|.++. ++.. +..+++|++|++++|.+++..|.. +. .+++|++|++++|
T Consensus 88 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n 164 (455)
T 3v47_A 88 YNQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL--NMRRFHVLDLTFN 164 (455)
T ss_dssp TCTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG--GCTTCCEEECTTC
T ss_pred CCccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC--CCCcccEEeCCCC
Confidence 9988777554443 68999999999999954 4443 888999999999999999877776 66 8999999999999
Q ss_pred cCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCc
Q 040238 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237 (549)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 237 (549)
.+.+..+..+ ......+++.|++++|.+.+..+.... ......+..+++|++|++++|.+.+..|.
T Consensus 165 ~l~~~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~-------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 165 KVKSICEEDL-LNFQGKHFTLLRLSSITLQDMNEYWLG-------------WEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp CBSCCCTTTS-GGGTTCEEEEEECTTCBCTTCSTTCTT-------------HHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred cccccChhhh-hccccccccccccccCcccccchhhcc-------------ccccccccccceeeeEecCCCcccccchh
Confidence 9988766532 223223488889988888754332110 00000112234444444444444444333
Q ss_pred chhcCC--CCCCeeecCCCccCCcCCCcccccCCCCccc--cCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc
Q 040238 238 CLGNSS--DELSVLDLQGNNFFGTIPNTFIKERRIPRSL--INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI 313 (549)
Q Consensus 238 ~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 313 (549)
.+.... ++|+.|++++|...+.......-....+..+ ...++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc
Confidence 333221 2445555554443321110000000000011 123577777887777777777777777777777777777
Q ss_pred cccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCc
Q 040238 314 FYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNS 393 (549)
Q Consensus 314 l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 393 (549)
+.+..+..+ .++++|++|++++| .+++..+..|..+++|++|++++|+
T Consensus 311 l~~~~~~~~--~~l~~L~~L~Ls~N------------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 311 INKIDDNAF--WGLTHLLKLNLSQN------------------------------FLGSIDSRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp CCEECTTTT--TTCTTCCEEECCSS------------------------------CCCEECGGGGTTCTTCCEEECCSSC
T ss_pred ccccChhHh--cCcccCCEEECCCC------------------------------ccCCcChhHhcCcccCCEEECCCCc
Confidence 766654443 45555555555554 4555667788999999999999999
Q ss_pred cccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCC
Q 040238 394 LQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQ 451 (549)
Q Consensus 394 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 451 (549)
+++..|..|..+++|+.|++++|++++..+..|..+++|++|++++|+++|.+|...+
T Consensus 359 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 359 IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 9988899999999999999999999987777889999999999999999999996533
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=359.89 Aligned_cols=418 Identities=17% Similarity=0.166 Sum_probs=329.7
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEEeC-CCCcCccccCchhh---------------------------------
Q 040238 23 RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDL-AKNSYRGTIKLDVL--------------------------------- 68 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~--------------------------------- 68 (549)
.+++.|+|++|++.+.+|..|+++++|++|+| ++|.+.|..+....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 88887766332100
Q ss_pred ----------------cCCCCCCCeEeccC--CccceeeccCCCcCCCCCCEEEccCCCCCC------------------
Q 040238 69 ----------------LTSWKNLEFLALSL--NRLSVLTKATSNTTSQKLKYIGLRSCNLTK------------------ 112 (549)
Q Consensus 69 ----------------~~~l~~L~~L~Ls~--n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------ 112 (549)
......++.+.+.. |.++.++.. ...+++|++|++++|.++.
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~--l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA--IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH--HhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 01112333344433 655555432 2378999999999999976
Q ss_pred CChhhc--CCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc-CCC-CCCcccc----ccCCCCCccEEEccCC
Q 040238 113 FPNFLQ--NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF-LTG-FDQHLVV----LPANKGDLLTFDLSSN 184 (549)
Q Consensus 113 l~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~~~----~~~~~~~L~~L~L~~n 184 (549)
+|..+. ++++|++|++++|.+.+.+|..+. .+++|+.|++++|+ +++ ..+..+. .....++|+.|++++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHh--CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 999877 999999999999999999999998 99999999999998 775 2222111 1112234999999999
Q ss_pred cCCCCCCC-----CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 185 NLQGPLPV-----PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 185 ~l~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
.+. .+|. .+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+..+|++|++++|.++ .
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 999 7776 3889999999999999 777 8999999999999999999 888888777623999999999997 4
Q ss_pred CCCcccccCCCCccccCC--CCCcEEEccCCcCCCCcCccc---C--CCCCCCEEEccCcccccccCCCCCccCCCCCce
Q 040238 260 IPNTFIKERRIPRSLINC--SKLEFLGLGNNQISDTFPSWL---G--TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRI 332 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~--~~L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 332 (549)
+|.. +..+ ++|+.|++++|++.+.+|... . .+++|+.|++++|.+..+.... +..+++|+.
T Consensus 634 lp~~----------~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~--~~~l~~L~~ 701 (876)
T 4ecn_A 634 IPNI----------FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL--FATGSPIST 701 (876)
T ss_dssp CCSC----------CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH--HHTTCCCSE
T ss_pred Cchh----------hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH--HccCCCCCE
Confidence 4433 3444 459999999999988665322 2 3458999999999998553322 257899999
Q ss_pred eeCCCCccccccChhhhhcccc-c-cccccceEEccCCcCcccCchhhc--CCCCCCEEEccCCccccCCCcccCCCCCC
Q 040238 333 IDLSNNIFIGTLPLKSFLCWNA-M-KIVNTTGIILSNNSFDSVIPASIA--NLKGLQVLNLQNNSLQGHIPSCLGNLPNL 408 (549)
Q Consensus 333 L~ls~n~l~~~~~~~~~~~l~~-l-~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 408 (549)
|++++|++. .+|...+..... + ...+++.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 999999988 778766554320 0 0113499999999999 6777776 89999999999999996 78889999999
Q ss_pred CEeeCCC------CcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCC
Q 040238 409 ESLDLSN------NKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGL 466 (549)
Q Consensus 409 ~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l 466 (549)
+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|... .+.++.+.+.+|+..
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNI 840 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTC
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCC
Confidence 9999976 888889999999999999999999999 6777653 356677777777654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=347.13 Aligned_cols=416 Identities=19% Similarity=0.201 Sum_probs=314.4
Q ss_pred CEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEc
Q 040238 26 EAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGL 105 (549)
Q Consensus 26 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l 105 (549)
++|++++|+++. +|..+. ++|++|++++|.+++..+.. |..+++|++|++++|+++.+....+. .+++|++|++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSD--ILSLSKLRILIISHNRIQYLDISVFK-FNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHH--HTTCTTCCEEECCSSCCCEEEGGGGT-TCTTCCEEEC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhh--ccccccccEEecCCCccCCcChHHhh-cccCCCEEec
Confidence 689999999995 455554 89999999999999665556 89999999999999999887654443 6899999999
Q ss_pred cCCCCCCCChhhcCCCCccEEEeecCcCCC-CCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCc--cEEEcc
Q 040238 106 RSCNLTKFPNFLQNQYHLLVLDLSDNRIQG-KVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDL--LTFDLS 182 (549)
Q Consensus 106 ~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L--~~L~L~ 182 (549)
++|.++.+|.. .+++|++|++++|.+++ ..|..+. .+++|++|++++|.+.... ...... | +.|+++
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~n~l~~~~----~~~l~~--L~L~~L~l~ 146 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFG--NMSQLKFLGLSTTHLEKSS----VLPIAH--LNISKVLLV 146 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGG--GCTTCCEEEEEESSCCGGG----GGGGTT--SCEEEEEEE
T ss_pred CCCceeecCcc--ccCCccEEeccCCccccccchhhhc--cCCcceEEEecCcccchhh----cccccc--ceeeEEEee
Confidence 99999999876 89999999999999987 4688898 9999999999999987622 122222 6 999999
Q ss_pred CCcC--CCCCCCCCCCcc----eeecccCCCCCcCch-hhhcCCCCCeEeCcCC--------------------------
Q 040238 183 SNNL--QGPLPVPPPGTI----HYLASNNSLTGEIPS-WICNLNILESLVLSHN-------------------------- 229 (549)
Q Consensus 183 ~n~l--~~~~~~~~~~L~----~L~l~~n~~~~~~~~-~l~~l~~L~~L~Ls~n-------------------------- 229 (549)
+|.+ .+..|..+..++ .+++++|.+.+.++. .+..+++|+.|++++|
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 9999 777777776654 667788887765443 3344555555555554
Q ss_pred ----cCCCcCCcchhc--CCCCCCeeecCCCccCCcCCCccc-----ccC------------CCC-ccccCC---CCCcE
Q 040238 230 ----NLSGLLPQCLGN--SSDELSVLDLQGNNFFGTIPNTFI-----KER------------RIP-RSLINC---SKLEF 282 (549)
Q Consensus 230 ----~l~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~-----~~~------------~l~-~~l~~~---~~L~~ 282 (549)
.+.+..+..+.. ..++|++|++++|.+++.+|..+. ... .+| .++..+ ++|+.
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSE
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeE
Confidence 333221111110 012689999999999877776551 100 112 111111 45777
Q ss_pred EEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCcccc--ccChhhhhcccccccccc
Q 040238 283 LGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIG--TLPLKSFLCWNAMKIVNT 360 (549)
Q Consensus 283 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~l~~l~~~~l 360 (549)
|++++|.+.... .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|++.+ .+| ..+..+++|
T Consensus 307 L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L----- 376 (520)
T 2z7x_B 307 FTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIA-EMTTQMKSL----- 376 (520)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTC-----
T ss_pred EEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccch-HHHhhCCCC-----
Confidence 777777665332 12678999999999999998766655 789999999999999875 222 446777777
Q ss_pred ceEEccCCcCcccCch-hhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 361 TGIILSNNSFDSVIPA-SIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
+.|++++|.+++.+|. .|..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCC
Confidence 9999999999985554 588999999999999999887777654 79999999999999 7888788999999999999
Q ss_pred CcCcccCCC-CCCCCccCCCccCCCCCCCCCC
Q 040238 440 NHLTGLIPP-GKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 440 N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
|+++...+. ...+..++.+.+.+|++.|+|+
T Consensus 454 N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 454 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999954333 3445667777788888877654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=344.41 Aligned_cols=450 Identities=19% Similarity=0.157 Sum_probs=308.1
Q ss_pred EECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCC
Q 040238 4 LYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLN 83 (549)
Q Consensus 4 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n 83 (549)
.+-++-+++ .+|..+. +++++|+|++|.|+++.+.+|.++++|++|+|++|+|++..+.. |.++++|++|+|++|
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~--f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGN 110 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEEECTTC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH--hcCCCCCCEEEccCC
Confidence 344555666 4555442 47999999999999999999999999999999999999655555 899999999999999
Q ss_pred ccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCC-CCcccccccCCCCcEEEccCCcCCC
Q 040238 84 RLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGK-VPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 84 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+++.++...+. .+++|++|++++|+++.+|. .++++++|++|++++|.++.. .|..+. .+++|++|++++|++.+
T Consensus 111 ~l~~l~~~~f~-~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 111 PIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCEECGGGGT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCSSCCCE
T ss_pred cCCCCCHHHhc-CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc--cchhhhhhcccCccccc
Confidence 99988776544 68999999999999988886 589999999999999999754 567777 89999999999999988
Q ss_pred CCCcccccc-CCCCCccEEEccCCcCCCCCCCCCC--CcceeecccCCCCC-----------------------------
Q 040238 162 FDQHLVVLP-ANKGDLLTFDLSSNNLQGPLPVPPP--GTIHYLASNNSLTG----------------------------- 209 (549)
Q Consensus 162 ~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~--~L~~L~l~~n~~~~----------------------------- 209 (549)
..+..+... ........++++.|.+....+.... .+..+++.+|....
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 765432211 1111144667777766544333211 12222222221110
Q ss_pred -----------------------------cCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcC
Q 040238 210 -----------------------------EIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260 (549)
Q Consensus 210 -----------------------------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 260 (549)
.....+..+.+++.+++.++.+....+ +. ....++.|++.+|.+.+..
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FS-YNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GG-SCCCCSEEEEESCEESSCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cc-cchhhhhhhcccccccCcC
Confidence 011112223334444444443332111 11 1124556666665554433
Q ss_pred CCccccc---------CCCCccccCCCCCcEEEccCCcCCCC--c-----------------------CcccCCCCCCCE
Q 040238 261 PNTFIKE---------RRIPRSLINCSKLEFLGLGNNQISDT--F-----------------------PSWLGTLPNLNV 306 (549)
Q Consensus 261 ~~~~~~~---------~~l~~~l~~~~~L~~L~l~~n~l~~~--~-----------------------~~~~~~l~~L~~ 306 (549)
+..+... ...+.....+++|+.|++++|.+... . +..+..+++|+.
T Consensus 345 ~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 424 (635)
T 4g8a_A 345 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEH 424 (635)
T ss_dssp CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCE
T ss_pred cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccc
Confidence 3222110 00111223456666666666655321 1 223445556666
Q ss_pred EEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcC-cccCchhhcCCCCCC
Q 040238 307 LILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSF-DSVIPASIANLKGLQ 385 (549)
Q Consensus 307 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~ 385 (549)
+++.++......+. ..+..+.+++.++++.|.+.+..+ ..+..++.+ +.|++++|.+ .+..|..|..+++|+
T Consensus 425 l~l~~~~~~~~~~~-~~~~~l~~l~~l~ls~n~l~~~~~-~~~~~~~~L-----~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 425 LDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSL-----EVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp EECTTSEEESTTSS-CTTTTCTTCCEEECTTSCCEECCT-TTTTTCTTC-----CEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred hhhhhccccccccc-cccccccccccccccccccccccc-cccccchhh-----hhhhhhhcccccccCchhhhhccccC
Confidence 66665555443322 223567777777777777664443 446666666 8999999975 456788899999999
Q ss_pred EEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCC-CC-CccCCCccCCC
Q 040238 386 VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGK-QF-ATFDNTSFDSN 463 (549)
Q Consensus 386 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~-~~~~~~~~~~n 463 (549)
+|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|++++|++++..|... .+ ..++.+.+.+|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99999999999899999999999999999999998889999999999999999999999887642 22 46777888999
Q ss_pred CCCCCCCC
Q 040238 464 SGLCGRPL 471 (549)
Q Consensus 464 ~~lc~~~~ 471 (549)
|+.|+|.+
T Consensus 578 p~~C~C~~ 585 (635)
T 4g8a_A 578 DFACTCEH 585 (635)
T ss_dssp CBCCSGGG
T ss_pred CCcccCCc
Confidence 98887753
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=325.38 Aligned_cols=371 Identities=25% Similarity=0.260 Sum_probs=266.4
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCC-------------CEEeCCCCcCccccCchh
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQL-------------FFLDLAKNSYRGTIKLDV 67 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L-------------~~L~Ls~n~i~~~~~~~~ 67 (549)
|++|++++|.+ +.+|++|+++++|++|++++|.+.+..|..++++.+| ++|++++|.+++ +|..
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~- 89 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC-
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC-
Confidence 68899999999 7899999999999999999999999999999998864 999999999984 3422
Q ss_pred hcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCC
Q 040238 68 LLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQ 147 (549)
Q Consensus 68 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 147 (549)
.++|++|++++|.++.++.. +.+|++|++++|.++.+|.. .++|++|++++|.+++ +| .+. .++
T Consensus 90 ----~~~L~~L~l~~n~l~~lp~~-----~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp-~~~--~l~ 153 (454)
T 1jl5_A 90 ----PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LP-ELQ--NSS 153 (454)
T ss_dssp ----CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CC-CCT--TCT
T ss_pred ----cCCCCEEEccCCcCCccccc-----cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-Cc-ccC--CCC
Confidence 37899999999988876542 47899999999999877753 2689999999999985 66 477 899
Q ss_pred CCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCC--CCCCcceeecccCCCCCcCchhhhcCCCCCeEe
Q 040238 148 NLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV--PPPGTIHYLASNNSLTGEIPSWICNLNILESLV 225 (549)
Q Consensus 148 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 225 (549)
+|++|++++|++.+++... ++|++|++++|.+.+ +|. .+++|++|++++|.+.+ +|.. .++|++|+
T Consensus 154 ~L~~L~l~~N~l~~lp~~~-------~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDLP-------PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp TCCEEECCSSCCSCCCCCC-------TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCEEECCCCcCcccCCCc-------ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 9999999999998755431 249999999999987 343 28899999999999986 3332 35899999
Q ss_pred CcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCC
Q 040238 226 LSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305 (549)
Q Consensus 226 Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 305 (549)
+++|.+. .+|. +.. .++|++|++++|++++. |. .+++|++|++++|++++ +|.. .++|+
T Consensus 222 l~~n~l~-~lp~-~~~-l~~L~~L~l~~N~l~~l-----------~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~ 280 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQN-LPFLTTIYADNNLLKTL-----------PD---LPPSLEALNVRDNYLTD-LPEL---PQSLT 280 (454)
T ss_dssp CCSSCCS-SCCC-CTT-CTTCCEEECCSSCCSSC-----------CS---CCTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred CcCCcCC-cccc-cCC-CCCCCEEECCCCcCCcc-----------cc---cccccCEEECCCCcccc-cCcc---cCcCC
Confidence 9999998 6774 554 44899999999998752 21 24789999999999986 4432 47899
Q ss_pred EEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCC
Q 040238 306 VLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQ 385 (549)
Q Consensus 306 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~ 385 (549)
+|++++|.+.+... -.++|+.|++++|++.+ ++ .+. .+++.|++++|.+++ +|.. +++|+
T Consensus 281 ~L~ls~N~l~~l~~------~~~~L~~L~l~~N~l~~-i~-----~~~----~~L~~L~Ls~N~l~~-lp~~---~~~L~ 340 (454)
T 1jl5_A 281 FLDVSENIFSGLSE------LPPNLYYLNASSNEIRS-LC-----DLP----PSLEELNVSNNKLIE-LPAL---PPRLE 340 (454)
T ss_dssp EEECCSSCCSEESC------CCTTCCEEECCSSCCSE-EC-----CCC----TTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred EEECcCCccCcccC------cCCcCCEEECcCCcCCc-cc-----CCc----CcCCEEECCCCcccc-cccc---CCcCC
Confidence 99999999987532 13689999999999875 22 111 134999999999997 4543 58999
Q ss_pred EEEccCCccccCCCcccCCCCCCCEeeCCCCcccc--cCCcCccCC-------------CCCcEEecccCcCcc--cCC
Q 040238 386 VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG--QIPQQLVEL-------------TFLEFFNVSDNHLTG--LIP 447 (549)
Q Consensus 386 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~N~l~~--~~p 447 (549)
+|++++|+++ .+|. .+++|+.|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|
T Consensus 341 ~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 341 RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 9999999999 5666 47899999999999998 788888877 889999999999997 555
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=330.45 Aligned_cols=423 Identities=20% Similarity=0.191 Sum_probs=318.4
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.+...+++++++|++++ +|..+. ++|++|++++|.+++..+.. |.++++|++|++++|.++.+....+. .+++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L 102 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPD--ISFLSELRVLRLSHNRIRSLDFHVFL-FNQDL 102 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGG--TTTCTTCCEEECCSCCCCEECTTTTT-TCTTC
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhh--hccCCCccEEECCCCCCCcCCHHHhC-CCCCC
Confidence 34556999999999996 454443 89999999999999666666 89999999999999999887665444 68999
Q ss_pred CEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCC-CCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGK-VPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
++|++++|.++.+|.. .+++|++|++++|.+++. .|..+. .+++|++|++++|.+...... ....-+|+.|
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~--~l~~L~~L~L~~n~l~~~~~~----~l~~L~L~~L 174 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFG--NLTKLTFLGLSAAKFRQLDLL----PVAHLHLSCI 174 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGG--GCTTCCEEEEECSBCCTTTTG----GGTTSCEEEE
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhc--ccCcccEEecCCCccccCchh----hhhhceeeEE
Confidence 9999999999999977 899999999999999863 467888 999999999999998763222 1222025999
Q ss_pred EccCCcC--CCCCCCCCCCcc----eeecccCCCCCcCch-hhhcCCCCCeEeCcCCc----------------------
Q 040238 180 DLSSNNL--QGPLPVPPPGTI----HYLASNNSLTGEIPS-WICNLNILESLVLSHNN---------------------- 230 (549)
Q Consensus 180 ~L~~n~l--~~~~~~~~~~L~----~L~l~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~---------------------- 230 (549)
++++|.+ .+..|..+..+. .+++++|.+.+.++. .+..+++|+.+++++|.
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 9999999 777777655543 567788887765543 33456666666666653
Q ss_pred ------CCCc----CCcchhcCCCCCCeeecCCCccCCcCCCcccc-----cC------------CCC-cccc---CCCC
Q 040238 231 ------LSGL----LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK-----ER------------RIP-RSLI---NCSK 279 (549)
Q Consensus 231 ------l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----~~------------~l~-~~l~---~~~~ 279 (549)
+.+. ++..+. .++|++|++++|.+++.+|..+.. .. .+| .++. ...+
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 2211 111111 127999999999999887765521 00 111 1111 1246
Q ss_pred CcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccC-hhhhhcccccccc
Q 040238 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP-LKSFLCWNAMKIV 358 (549)
Q Consensus 280 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~l~~l~~~ 358 (549)
|++|++++|.+.... ....+++|++|++++|.+.+..+..+ ..+++|+.|++++|++.+.-+ +..+..++++
T Consensus 333 L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L--- 405 (562)
T 3a79_B 333 IKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVALMTKNMSSL--- 405 (562)
T ss_dssp CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC---
T ss_pred ceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh--cccCCCCEEECCCCCcCCcccchhhhcCCCCC---
Confidence 888999998876432 12678999999999999998766655 889999999999999875221 2346677777
Q ss_pred ccceEEccCCcCcccCc-hhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEec
Q 040238 359 NTTGIILSNNSFDSVIP-ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437 (549)
Q Consensus 359 ~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 437 (549)
+.|++++|.+++.+| ..|..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 406 --~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 406 --ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp --CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred --CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 999999999998444 5689999999999999999877666554 79999999999999 67777779999999999
Q ss_pred ccCcCcccCCC-CCCCCccCCCccCCCCCCCCCCC
Q 040238 438 SDNHLTGLIPP-GKQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 438 ~~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
++|+++...+. ...++.++.+.+.+|++.|+|+.
T Consensus 481 ~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 99999954443 34566777788899988887653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=320.52 Aligned_cols=382 Identities=18% Similarity=0.189 Sum_probs=255.8
Q ss_pred CCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccc-eeeccCCCcCCCCCCEE
Q 040238 25 LEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLS-VLTKATSNTTSQKLKYI 103 (549)
Q Consensus 25 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L 103 (549)
-+.++.+++++... |. + .++|++|++++|.+++..+.. |.++++|++|++++|.+. .++...+ ..+++|++|
T Consensus 12 ~~~~~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~L~~n~~~~~i~~~~~-~~l~~L~~L 84 (455)
T 3v47_A 12 GYNAICINRGLHQV-PE-L--PAHVNYVDLSLNSIAELNETS--FSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSSLIIL 84 (455)
T ss_dssp TTEEECCSSCCSSC-CC-C--CTTCCEEECCSSCCCEECTTT--TSSCTTCCEEECCCCSTTCEECTTTT-TTCTTCCEE
T ss_pred ccccCcCCCCcccC-CC-C--CCccCEEEecCCccCcCChhH--hccCccccEEECcCCcccceECcccc-cccccCCEE
Confidence 35677777777644 33 2 268899999999888666666 888888999999888765 3333222 257777777
Q ss_pred EccCCCCCCC-ChhhcCCCCccEEEeecCcCCCCCCcc--cccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEE
Q 040238 104 GLRSCNLTKF-PNFLQNQYHLLVLDLSDNRIQGKVPKW--LLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180 (549)
Q Consensus 104 ~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (549)
++++|.++.+ |..+..+++|++|++++|.+++..+.. +. .+++|++|++++|.+.+..+..
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~-------------- 148 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK--PLTSLEMLVLRDNNIKKIQPAS-------------- 148 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT--TCTTCCEEECCSSBCCSCCCCG--------------
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccccc--CcccCCEEECCCCccCccCccc--------------
Confidence 7777777554 556777777777777777776533333 54 5666777776666665543331
Q ss_pred ccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCC-CCCCeeecCCCccCCc
Q 040238 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSS-DELSVLDLQGNNFFGT 259 (549)
Q Consensus 181 L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~~L~~L~L~~n~l~~~ 259 (549)
.+..+++|++|++++|.+.+..+..+.... ++|+.|++++|.+.+.
T Consensus 149 ---------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 149 ---------------------------------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp ---------------------------------GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred ---------------------------------ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence 134444555555555555444444333321 2455555555555443
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC---CCCCCEEEccCcccccc----------cCCCCCccC
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT---LPNLNVLILRSNIFYGI----------IKEPRTDCG 326 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~----------~~~~~~~~~ 326 (549)
.+..+.. .....+..+++|++|++++|++.+..+..+.. .++|+.|++++|...+. ....+....
T Consensus 196 ~~~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 196 NEYWLGW--EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp STTCTTH--HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGT
T ss_pred chhhccc--cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccc
Confidence 3222100 00011223455666666666655544444332 25566666665543322 111221123
Q ss_pred CCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCC
Q 040238 327 FSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLP 406 (549)
Q Consensus 327 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 406 (549)
.++|+.|++++|++.+..| ..+..+++| +.|++++|.+++..|..|..+++|++|++++|.+.+..|..|..++
T Consensus 274 ~~~L~~L~l~~n~l~~~~~-~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLK-SVFSHFTDL-----EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TSCCCEEECCSSCCCEECT-TTTTTCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccCceEEEecCccccccch-hhcccCCCC-----CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 4689999999999876555 447777777 9999999999999899999999999999999999988889999999
Q ss_pred CCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCC
Q 040238 407 NLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 407 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+|++|++++|++++..|..|..+++|++|++++|++++..+.. ..++.++.+.+.+|++.|++|
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999888999999999999999999999765543 456777888888988888776
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=308.18 Aligned_cols=347 Identities=27% Similarity=0.358 Sum_probs=263.8
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.++++++|+++++.+... | .+..+++|++|++++|.+++..+ +..+++|++|++++|.+..++. ...+++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L 114 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITP---LANLTNL 114 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh----hhccccCCEEECCCCccccChh---hcCCCCC
Confidence 467889999999888754 3 47888999999999998885433 6888999999999998777665 2368899
Q ss_pred CEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEE
Q 040238 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (549)
++|++++|.++.++. +..+++|++|++++|.+.+ .+ .+. .+++|+.|+++ +.+....+ .... ++|+.|+
T Consensus 115 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~--~l~~L~~L~l~-~~~~~~~~---~~~l--~~L~~L~ 183 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-ALS--GLTSLQQLSFG-NQVTDLKP---LANL--TTLERLD 183 (466)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGT--TCTTCSEEEEE-ESCCCCGG---GTTC--TTCCEEE
T ss_pred CEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-hhc--cCCcccEeecC-CcccCchh---hccC--CCCCEEE
Confidence 999999998888765 8888999999999998874 33 355 88999999986 44443322 1222 2366666
Q ss_pred ccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcC
Q 040238 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260 (549)
Q Consensus 181 L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 260 (549)
+++|.+.+ + ..+..+++|++|++++|.+.+..| +.. .++|++|++++|.+++.
T Consensus 184 l~~n~l~~----------------------~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 184 ISSNKVSD----------------------I-SVLAKLTNLESLIATNNQISDITP--LGI-LTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp CCSSCCCC----------------------C-GGGGGCTTCSEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC-
T ss_pred CcCCcCCC----------------------C-hhhccCCCCCEEEecCCccccccc--ccc-cCCCCEEECCCCCcccc-
Confidence 66665542 1 236777888888888888775544 333 34788888888877642
Q ss_pred CCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCcc
Q 040238 261 PNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIF 340 (549)
Q Consensus 261 ~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 340 (549)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++
T Consensus 237 -----------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 237 -----------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQL 299 (466)
T ss_dssp -----------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCC
T ss_pred -----------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcc
Confidence 134677888888888888876544 7788888888888888877644 36788888888888887
Q ss_pred ccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccc
Q 040238 341 IGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420 (549)
Q Consensus 341 ~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 420 (549)
.+..+ +..+++| +.|++++|.+++..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++++
T Consensus 300 ~~~~~---~~~l~~L-----~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 300 EDISP---ISNLKNL-----TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp SCCGG---GGGCTTC-----SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCchh---hcCCCCC-----CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 75433 5555555 888889998887665 78899999999999999854 468899999999999999998
Q ss_pred cCCcCccCCCCCcEEecccCcCccc
Q 040238 421 QIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 421 ~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
..| +..+++|+.|++++|++++.
T Consensus 368 ~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GTTCTTCCEEECCCEEEECC
T ss_pred cch--hhcCCCCCEEeccCCcccCC
Confidence 776 88999999999999999874
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=311.75 Aligned_cols=368 Identities=24% Similarity=0.312 Sum_probs=269.9
Q ss_pred CcEEECCCCCCCCcccccccCCCCC-------------CEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchh
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSL-------------EAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDV 67 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 67 (549)
|++|++++|.+++.+|..++++++| ++|++++|.+++.. . -.++|++|++++|.+++ +|..
T Consensus 36 L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp-~---~~~~L~~L~l~~n~l~~-lp~~- 109 (454)
T 1jl5_A 36 KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP-E---LPPHLESLVASCNSLTE-LPEL- 109 (454)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC-S---CCTTCSEEECCSSCCSS-CCCC-
T ss_pred hhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC-C---CcCCCCEEEccCCcCCc-cccc-
Confidence 4678899999999999999998865 99999999998643 3 24789999999999995 5533
Q ss_pred hcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCC
Q 040238 68 LLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQ 147 (549)
Q Consensus 68 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 147 (549)
.++|++|++++|.++.++..+ ++|++|++++|.++.+| .+..+++|++|++++|++++ +|. ..+
T Consensus 110 ----~~~L~~L~l~~n~l~~l~~~~-----~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~-----~~~ 173 (454)
T 1jl5_A 110 ----PQSLKSLLVDNNNLKALSDLP-----PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPD-----LPP 173 (454)
T ss_dssp ----CTTCCEEECCSSCCSCCCSCC-----TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCC-----CCT
T ss_pred ----cCCCcEEECCCCccCcccCCC-----CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCC-----Ccc
Confidence 379999999999888765532 68999999999998899 59999999999999999984 554 345
Q ss_pred CCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCc
Q 040238 148 NLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLS 227 (549)
Q Consensus 148 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls 227 (549)
+|++|++++|++.+.+ . .... ++|+.|++++|.+.+ +|...++|++|++++|.+. .+|. +..+++|++|+++
T Consensus 174 ~L~~L~L~~n~l~~l~-~--~~~l--~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELP-E--LQNL--PFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCCSSCC-C--CTTC--TTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred cccEEECcCCcCCcCc-c--ccCC--CCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECC
Confidence 8999999999998864 2 2333 349999999999986 5666789999999999998 5664 8899999999999
Q ss_pred CCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEE
Q 040238 228 HNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVL 307 (549)
Q Consensus 228 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 307 (549)
+|.+.+ +|.. .++|++|++++|.+++. |. .+++|++|++++|++++. +. ..++|++|
T Consensus 246 ~N~l~~-l~~~----~~~L~~L~l~~N~l~~l-----------~~---~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L 302 (454)
T 1jl5_A 246 NNLLKT-LPDL----PPSLEALNVRDNYLTDL-----------PE---LPQSLTFLDVSENIFSGL-SE---LPPNLYYL 302 (454)
T ss_dssp SSCCSS-CCSC----CTTCCEEECCSSCCSCC-----------CC---CCTTCCEEECCSSCCSEE-SC---CCTTCCEE
T ss_pred CCcCCc-cccc----ccccCEEECCCCccccc-----------Cc---ccCcCCEEECcCCccCcc-cC---cCCcCCEE
Confidence 999984 5543 35899999999999752 22 237899999999999863 21 12689999
Q ss_pred EccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEE
Q 040238 308 ILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVL 387 (549)
Q Consensus 308 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L 387 (549)
++++|.+.++.. ..++|+.|++++|++.+ +|.. ++++ +.|++++|.+++ +|. .+++|++|
T Consensus 303 ~l~~N~l~~i~~------~~~~L~~L~Ls~N~l~~-lp~~----~~~L-----~~L~L~~N~l~~-lp~---~l~~L~~L 362 (454)
T 1jl5_A 303 NASSNEIRSLCD------LPPSLEELNVSNNKLIE-LPAL----PPRL-----ERLIASFNHLAE-VPE---LPQNLKQL 362 (454)
T ss_dssp ECCSSCCSEECC------CCTTCCEEECCSSCCSC-CCCC----CTTC-----CEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred ECcCCcCCcccC------CcCcCCEEECCCCcccc-cccc----CCcC-----CEEECCCCcccc-ccc---hhhhccEE
Confidence 999999987521 12589999999999885 5532 3344 999999999995 454 47899999
Q ss_pred EccCCcccc--CCCcccCCC-------------CCCCEeeCCCCcccc--cCCcCccCCCCCcEEecccCcCcccCC
Q 040238 388 NLQNNSLQG--HIPSCLGNL-------------PNLESLDLSNNKFSG--QIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 388 ~l~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
++++|++++ .+|..++.+ ++|+.|++++|++++ .+|. +++.|.+.+|.+.+..|
T Consensus 363 ~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYE 433 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------------
T ss_pred ECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccc
Confidence 999999998 678888877 899999999999997 5554 46777888998887665
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-36 Score=303.76 Aligned_cols=353 Identities=20% Similarity=0.163 Sum_probs=248.0
Q ss_pred CCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeecc
Q 040238 12 SGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKA 91 (549)
Q Consensus 12 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 91 (549)
.+..+..+.++++|++|++++|.+.+. | .+..+++|++|++++|.+++. . +..+++|++|++++|.++.++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCCC--
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCceee--
Confidence 344455677888888888888888865 4 578888888888888888753 3 678888888888888777653
Q ss_pred CCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccC
Q 040238 92 TSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPA 171 (549)
Q Consensus 92 ~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 171 (549)
...+++|++|++++|.++.+| +..+++|++|++++|++++. + +. .+++|++|++++|...+..+ ....
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l-~--l~--~l~~L~~L~l~~n~~~~~~~---~~~l 169 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI-D--VS--HNTQLTELDCHLNKKITKLD---VTPQ 169 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC-C--CT--TCTTCCEEECTTCSCCCCCC---CTTC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee-c--cc--cCCcCCEEECCCCCcccccc---cccC
Confidence 226788888888888887775 77888888888888888753 2 44 78888888888885433221 1222
Q ss_pred CCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeec
Q 040238 172 NKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDL 251 (549)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 251 (549)
++|+.|++++|.+++.....+++|+.|++++|.+.+. .+..+++|++|++++|.+++ +| +... ++|++|++
T Consensus 170 --~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l-~~L~~L~l 240 (457)
T 3bz5_A 170 --TQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPL-TQLTYFDC 240 (457)
T ss_dssp --TTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTC-TTCSEEEC
T ss_pred --CcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cccc-CCCCEEEe
Confidence 3488888888888875444478888888888888865 37788999999999999886 55 4443 48999999
Q ss_pred CCCccCCcCCCcccccCCCCccccCCCCCcEEEccCC----------cCCCCcCcccCCCCCCCEEEccCcccccccCCC
Q 040238 252 QGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN----------QISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP 321 (549)
Q Consensus 252 ~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 321 (549)
++|.+++..+ ..+++|+.|++++| .+.+.+| ++.+++|+.|++++|...+..+.
T Consensus 241 ~~N~l~~~~~-------------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~- 304 (457)
T 3bz5_A 241 SVNPLTELDV-------------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC- 304 (457)
T ss_dssp CSSCCSCCCC-------------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-
T ss_pred eCCcCCCcCH-------------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-
Confidence 9998886532 33455555555544 3333332 23445555555555544433321
Q ss_pred CCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcc
Q 040238 322 RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSC 401 (549)
Q Consensus 322 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 401 (549)
...+|+.|++++|. +++.|++++|.+++. + +..+++|++|++++|++++
T Consensus 305 ----~~~~L~~L~l~~~~-------------------~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~----- 353 (457)
T 3bz5_A 305 ----QAAGITELDLSQNP-------------------KLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD----- 353 (457)
T ss_dssp ----TTCCCSCCCCTTCT-------------------TCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-----
T ss_pred ----CCCcceEechhhcc-------------------cCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-----
Confidence 22344444444431 237888888888874 2 7788888888888888874
Q ss_pred cCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC
Q 040238 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449 (549)
Q Consensus 402 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 449 (549)
++.|+.|++++|.+.+. ..+..|+.+++++|+++|.+|..
T Consensus 354 ---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 354 ---FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ---ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 25677778888888765 24456788999999999999854
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=309.82 Aligned_cols=347 Identities=17% Similarity=0.141 Sum_probs=265.2
Q ss_pred CeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCC-hhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEc
Q 040238 76 EFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNI 154 (549)
Q Consensus 76 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L 154 (549)
+.++.+++.++.++... ..++++|++++|.++.++ ..+..+++|++|++++|.+++..|..|. .+++|++|++
T Consensus 14 ~~v~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGL 87 (477)
T ss_dssp TEEECCSCCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEEC
T ss_pred CEEEeCCCCcCcCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEEC
Confidence 46777777666665432 356788888888876664 4677778888888888877766677776 7778888888
Q ss_pred cCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCc
Q 040238 155 SHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 234 (549)
++|++..++...+ .. +++|++|++++|.+.+..+..|..+++|++|++++|.+.+.
T Consensus 88 ~~n~l~~~~~~~~-~~-----------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 88 RSNRLKLIPLGVF-TG-----------------------LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp CSSCCCSCCTTSS-TT-----------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred CCCcCCccCcccc-cC-----------------------CCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 7777776554421 11 23444444555555556667788888888888888888866
Q ss_pred CCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccc
Q 040238 235 LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF 314 (549)
Q Consensus 235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 314 (549)
.+..+..+. +|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|..
T Consensus 144 ~~~~~~~l~-~L~~L~l~~n~l~~~~~----------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 144 SHRAFSGLN-SLEQLTLEKCNLTSIPT----------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp CTTSSTTCT-TCCEEEEESCCCSSCCH----------HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ChhhccCCC-CCCEEECCCCcCcccCh----------hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 666666554 78899998888875432 2357788999999999998887777888899999999999887
Q ss_pred ccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCcc
Q 040238 315 YGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSL 394 (549)
Q Consensus 315 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 394 (549)
.+..+... ....+|+.|++++|++. .+|...+..+++| +.|++++|.+++..+..|..+++|++|++++|++
T Consensus 213 ~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 213 LDTMTPNC--LYGLNLTSLSITHCNLT-AVPYLAVRHLVYL-----RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp CCEECTTT--TTTCCCSEEEEESSCCC-SCCHHHHTTCTTC-----CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred ccccCccc--ccCccccEEECcCCccc-ccCHHHhcCcccc-----CeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 66655444 34558999999999877 6777778888877 9999999999998888999999999999999999
Q ss_pred ccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCCC
Q 040238 395 QGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 395 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
.+..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.|.++....+.......+.++...|..|.
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 98889999999999999999999998777788999999999999999999876433333333455666666776553
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=301.30 Aligned_cols=320 Identities=19% Similarity=0.204 Sum_probs=200.0
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.++.+++.++ .+|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+++..+.. |.++++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA--FNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh--hhCCccCCEEECC
Confidence 35667777776 4454443 57888888888888777778888888888888888887666665 7788888888888
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCC-ChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF-PNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~ 160 (549)
+|.++.++...+. .+++|++|++++|.++.+ +..+..+++|++|++++|.+.+..+..|. .+++|++|++++|++.
T Consensus 89 ~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 89 SNRLKLIPLGVFT-GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS--GLNSLEQLTLEKCNLT 165 (477)
T ss_dssp SSCCCSCCTTSST-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST--TCTTCCEEEEESCCCS
T ss_pred CCcCCccCccccc-CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhcc--CCCCCCEEECCCCcCc
Confidence 8877666544332 466777777777776444 34566666777777777766655555555 5666666666665544
Q ss_pred CCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchh
Q 040238 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240 (549)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 240 (549)
.. .+..+..+++|+.|++++|.+.+..+..+.
T Consensus 166 ~~------------------------------------------------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 197 (477)
T 2id5_A 166 SI------------------------------------------------PTEALSHLHGLIVLRLRHLNINAIRDYSFK 197 (477)
T ss_dssp SC------------------------------------------------CHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred cc------------------------------------------------ChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence 32 233455666666666666666644443443
Q ss_pred cCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCC
Q 040238 241 NSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320 (549)
Q Consensus 241 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 320 (549)
.. ++|++|++++|...+.++.. .....+|++|++++|++++..+..+..+++|+.|++++|.+.+..+.
T Consensus 198 ~l-~~L~~L~l~~~~~~~~~~~~----------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 198 RL-YRLKVLEISHWPYLDTMTPN----------CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp SC-TTCCEEEEECCTTCCEECTT----------TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cC-cccceeeCCCCccccccCcc----------cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 33 35666666666554433322 22334677777777777655445666777777777777776665444
Q ss_pred CCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCc
Q 040238 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS 400 (549)
Q Consensus 321 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 400 (549)
.+ ..+++|+.|++++|++. +..+..|..+++|++|++++|++++..+.
T Consensus 267 ~~--~~l~~L~~L~L~~n~l~------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 267 ML--HELLRLQEIQLVGGQLA------------------------------VVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp SC--TTCTTCCEEECCSSCCS------------------------------EECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred hc--cccccCCEEECCCCccc------------------------------eECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 33 45555555555555443 34444555666666666666666655555
Q ss_pred ccCCCCCCCEeeCCCCcccc
Q 040238 401 CLGNLPNLESLDLSNNKFSG 420 (549)
Q Consensus 401 ~~~~l~~L~~L~l~~n~l~~ 420 (549)
.|..+++|+.|++++|++..
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp GBSCGGGCCEEECCSSCEEC
T ss_pred HcCCCcccCEEEccCCCccC
Confidence 56666666666666666653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=290.14 Aligned_cols=335 Identities=21% Similarity=0.226 Sum_probs=209.0
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.++++++|++++|.+....+..|.++++|++|++++|.+++..+.. |..+++|++|++++|.++.++...+. .+++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCCCCTTTTT-TCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh--ccCCCCcCEEECCCCCCCcCCHHHhc-CCCCC
Confidence 4578888888888888777677788888888888888887555545 78888888888888877766554333 57778
Q ss_pred CEEEccCCCCCCCChh-hcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 101 KYIGLRSCNLTKFPNF-LQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
++|++++|.++.+|.. +..+++|++|++++|.+++..+..+. .+++|++|++++|++....
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~---------------- 181 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVD---------------- 181 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSSCCSBCC----------------
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCCcCCccc----------------
Confidence 8888888888777764 46777888888888877766666666 6777777777777665432
Q ss_pred EccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 180 ~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
+..+++|+.|++++|.+.+. ..+++|++|++++|.+...
T Consensus 182 -----------------------------------~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 182 -----------------------------------LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVV 220 (390)
T ss_dssp -----------------------------------GGGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEE
T ss_pred -----------------------------------cccccccceeeccccccccc------CCCCcceEEECCCCeeeec
Confidence 12233344444444433311 0111344445544444322
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
.. ..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|+
T Consensus 221 ~~-------------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 221 RG-------------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNR 283 (390)
T ss_dssp EC-------------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECCSSC
T ss_pred cc-------------cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc--cccccCCEEECCCCc
Confidence 11 1123455555555555432 234445555555555555444433322 344444444444444
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+. + ++..+..+++|++|++++|++. .+|..+..+++|+.|++++|+++
T Consensus 284 l~------------------------------~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 284 LV------------------------------A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp CC------------------------------E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred Cc------------------------------c-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 32 1 2233455678888888888887 56666777888888888888887
Q ss_pred ccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 420 GQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
.. + +..+++|+.|++++|++.|.+.. ..+..+....+.+++..|..+
T Consensus 332 ~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 332 TL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred ee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 44 3 66778899999999998876432 234445555566666666643
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=289.90 Aligned_cols=345 Identities=24% Similarity=0.309 Sum_probs=263.4
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|+.|+++++.++. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|++|++
T Consensus 48 l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L 119 (466)
T 1o6v_A 48 VTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTL 119 (466)
T ss_dssp CCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred ccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh----hcCCCCCCEEEC
Confidence 6899999999985 44 48899999999999999997765 9999999999999999985443 789999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~ 160 (549)
++|.++.++. ...+++|++|++++|.+..++ .+..+++|++|++++ .+.+.. .+. .+++|+.|++++|.+.
T Consensus 120 ~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~--~~~--~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 120 FNNQITDIDP---LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK--PLA--NLTTLERLDISSNKVS 190 (466)
T ss_dssp CSSCCCCCGG---GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG--GGT--TCTTCCEEECCSSCCC
T ss_pred CCCCCCCChH---HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch--hhc--cCCCCCEEECcCCcCC
Confidence 9998887765 237899999999999998886 488999999999974 454332 266 8999999999999988
Q ss_pred CCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchh
Q 040238 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240 (549)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 240 (549)
.... .... ++|++|++++|.+.+. .+ +..+++|++|++++|.+.+. + .+.
T Consensus 191 ~~~~---l~~l--~~L~~L~l~~n~l~~~---------------------~~--~~~l~~L~~L~l~~n~l~~~-~-~l~ 240 (466)
T 1o6v_A 191 DISV---LAKL--TNLESLIATNNQISDI---------------------TP--LGILTNLDELSLNGNQLKDI-G-TLA 240 (466)
T ss_dssp CCGG---GGGC--TTCSEEECCSSCCCCC---------------------GG--GGGCTTCCEEECCSSCCCCC-G-GGG
T ss_pred CChh---hccC--CCCCEEEecCCccccc---------------------cc--ccccCCCCEEECCCCCcccc-h-hhh
Confidence 7532 2222 2377777777666532 22 55667777777777777632 2 233
Q ss_pred cCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCC
Q 040238 241 NSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320 (549)
Q Consensus 241 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 320 (549)
.+ ++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+
T Consensus 241 ~l-~~L~~L~l~~n~l~~~~~------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 304 (466)
T 1o6v_A 241 SL-TNLTDLDLANNQISNLAP------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP- 304 (466)
T ss_dssp GC-TTCSEEECCSSCCCCCGG------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-
T ss_pred cC-CCCCEEECCCCccccchh------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-
Confidence 33 367777777777764322 4567778888888887775443 6777788888888887776543
Q ss_pred CCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCc
Q 040238 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS 400 (549)
Q Consensus 321 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 400 (549)
+..+++|+.|++++|++.+..| +..++.| +.|++++|.+++. ..+..+++|++|++++|++++..|
T Consensus 305 ---~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L-----~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 370 (466)
T 1o6v_A 305 ---ISNLKNLTYLTLYFNNISDISP---VSSLTKL-----QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP- 370 (466)
T ss_dssp ---GGGCTTCSEEECCSSCCSCCGG---GGGCTTC-----CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-
T ss_pred ---hcCCCCCCEEECcCCcCCCchh---hccCccC-----CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-
Confidence 3667788888888887776544 4455555 8888888888765 468899999999999999997766
Q ss_pred ccCCCCCCCEeeCCCCcccccCCc
Q 040238 401 CLGNLPNLESLDLSNNKFSGQIPQ 424 (549)
Q Consensus 401 ~~~~l~~L~~L~l~~n~l~~~~~~ 424 (549)
+..+++|+.|++++|++++ .|.
T Consensus 371 -~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 371 -LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp -GTTCTTCCEEECCCEEEEC-CCB
T ss_pred -hhcCCCCCEEeccCCcccC-Cch
Confidence 8899999999999999985 343
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=284.20 Aligned_cols=337 Identities=20% Similarity=0.215 Sum_probs=258.4
Q ss_pred EEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccC
Q 040238 28 IHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRS 107 (549)
Q Consensus 28 L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 107 (549)
.....+......+..++++++|++|++++|.+++. | . +..+++|++|++++|.++.++ ...+++|++|++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~--l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~ 94 (457)
T 3bz5_A 23 EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-T-G--IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDS 94 (457)
T ss_dssp HHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-T--GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCS
T ss_pred HHHHhcCcCcccccChhHcCCCCEEEccCCCcccC-h-h--hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcC
Confidence 33334445555566788999999999999999954 4 4 789999999999999888863 23689999999999
Q ss_pred CCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCC
Q 040238 108 CNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQ 187 (549)
Q Consensus 108 n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 187 (549)
|.++.++ +..+++|++|++++|.+++ ++ +. .+++|++|++++|++++++ .... ++|+.|++++|...
T Consensus 95 N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~--~~--~l~~L~~L~l~~N~l~~l~----l~~l--~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 95 NKLTNLD--VTPLTKLTYLNCDTNKLTK-LD--VS--QNPLLTYLNCARNTLTEID----VSHN--TQLTELDCHLNKKI 161 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECCSSCCSC-CC--CT--TCTTCCEEECTTSCCSCCC----CTTC--TTCCEEECTTCSCC
T ss_pred CCCceee--cCCCCcCCEEECCCCcCCe-ec--CC--CCCcCCEEECCCCccceec----cccC--CcCCEEECCCCCcc
Confidence 9998886 8899999999999999986 34 66 8999999999999998863 2223 34999999999655
Q ss_pred CCCCC-CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccc
Q 040238 188 GPLPV-PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK 266 (549)
Q Consensus 188 ~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 266 (549)
+.++. .+++|++|++++|.+.+. | +..+++|++|++++|.+++. + +..+ ++|++|++++|++++.
T Consensus 162 ~~~~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~-~--l~~l-~~L~~L~Ls~N~l~~i------- 227 (457)
T 3bz5_A 162 TKLDVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL-D--LNQN-IQLTFLDCSSNKLTEI------- 227 (457)
T ss_dssp CCCCCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTC-TTCSEEECCSSCCSCC-------
T ss_pred cccccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee-c--cccC-CCCCEEECcCCccccc-------
Confidence 55543 489999999999999974 4 78899999999999999864 3 4444 4899999999999862
Q ss_pred cCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccc----------ccccCCCCCccCCCCCceeeCC
Q 040238 267 ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF----------YGIIKEPRTDCGFSKLRIIDLS 336 (549)
Q Consensus 267 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----------~~~~~~~~~~~~l~~L~~L~ls 336 (549)
| +..+++|++|++++|++++..+ ..+++|+.|++++|.+ .+..+ ...+++|+.|+++
T Consensus 228 ----p--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 228 ----D--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVT 294 (457)
T ss_dssp ----C--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCT
T ss_pred ----C--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECC
Confidence 2 4678999999999999997654 4556666666555433 22221 2455666666666
Q ss_pred CCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCC
Q 040238 337 NNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416 (549)
Q Consensus 337 ~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 416 (549)
+|...+.+|.. ...+ +.|+ +.++++|++|++++|++++. + ++.+++|+.|++++|
T Consensus 295 ~n~~l~~l~~~----~~~L-----~~L~-------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 295 HNTQLYLLDCQ----AAGI-----TELD-------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TCTTCCEEECT----TCCC-----SCCC-------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSS
T ss_pred CCcccceeccC----CCcc-----eEec-------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCC
Confidence 66655444421 1111 2222 44557899999999999974 3 889999999999999
Q ss_pred cccccCCcCccCCCCCcEEecccCcCccc
Q 040238 417 KFSGQIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 417 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
++++ ++.|..|++++|.+.|.
T Consensus 350 ~l~~--------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 350 HIQD--------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp CCCB--------CTTGGGSSGGGTSEEEE
T ss_pred CCCC--------ccccccccccCCcEEec
Confidence 9985 35677788999998876
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=300.85 Aligned_cols=335 Identities=21% Similarity=0.223 Sum_probs=202.0
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.+++++.|++++|.+....+..|.++++|++|++++|.+++..+.. |..+++|++|++++|.++.++...+. .+++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCCCCTTTTT-TCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH--hcCCCCCCEEECCCCcCCCCCHHHHc-CCCCC
Confidence 3467777777777777766666777777777777777777555545 67777777777777766665544332 56777
Q ss_pred CEEEccCCCCCCCChh-hcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 101 KYIGLRSCNLTKFPNF-LQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
++|++++|.++.+|.. +..+++|++|++++|.+++..|..+. .+++|+.|++++|.+...+.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~--------------- 188 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDL--------------- 188 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECTTSCCSBCCG---------------
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh--cCCcCcEEECcCCCCCCcCh---------------
Confidence 7777777777666654 46677777777777777666666666 66777777777666554321
Q ss_pred EccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 180 ~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
..+++|+.|++++|.+.+. ..+++|+.|++++|.++..
T Consensus 189 ------------------------------------~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 189 ------------------------------------SLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVV 226 (597)
T ss_dssp ------------------------------------GGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSCCCEE
T ss_pred ------------------------------------hhhhhhhhhhcccCccccc------cCCchhheeeccCCccccc
Confidence 1233344444444433311 0111344444444444322
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
.+. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus 227 ~~~-------------~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 227 RGP-------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNR 289 (597)
T ss_dssp ECS-------------CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECTTSC
T ss_pred ccc-------------cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh--cCccCCCEEECCCCC
Confidence 110 113445555555544431 334444455555555554444433322 344444444444444
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+. + +|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus 290 l~------------------------------~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 290 LV------------------------------A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp CC------------------------------E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CC------------------------------C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 32 2 2333455678888888888887 56677778888888888888887
Q ss_pred ccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 420 GQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+. | +..+++|+.|++++|+|.|.+.. ..+..+....+.+++..|+.+
T Consensus 338 ~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 338 TL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred Cc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 44 2 66778899999999999877532 234555566677788888764
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=283.11 Aligned_cols=308 Identities=19% Similarity=0.159 Sum_probs=261.7
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++|++++|.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+.. +..+++|++|++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 124 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTVLVL 124 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEEC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH--hcCCCCCCEEEC
Confidence 578999999998766666899999999999999999988889999999999999999999766655 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
++|.++.++...+. .+++|++|++++|.++.++. .+..+++|++|++++|.+++. + +. .+++|+.|++++|.+
T Consensus 125 ~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~--~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 125 ERNDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LS--LIPSLFHANVSYNLL 198 (390)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GG--GCTTCSEEECCSSCC
T ss_pred CCCccCcCCHHHhc-CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cc--cccccceeecccccc
Confidence 99999877665433 68999999999999977754 688999999999999999854 2 33 789999999999988
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcch
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 239 (549)
...... ..|+.|++++|.+.......+++|+.|++++|.+.+. .++..+++|++|++++|.+.+..|..+
T Consensus 199 ~~~~~~--------~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STLAIP--------IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEEECC--------SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccCCC--------CcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 764322 2399999999999877555688999999999999864 578999999999999999997778777
Q ss_pred hcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccC
Q 040238 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319 (549)
Q Consensus 240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 319 (549)
..+. +|++|++++|.+++. |..+..+++|++|++++|++. .+|..+..+++|++|++++|.+....
T Consensus 269 ~~l~-~L~~L~L~~n~l~~~-----------~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~- 334 (390)
T 3o6n_A 269 VKMQ-RLERLYISNNRLVAL-----------NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK- 334 (390)
T ss_dssp TTCS-SCCEEECCSSCCCEE-----------ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-
T ss_pred cccc-cCCEEECCCCcCccc-----------CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC-
Confidence 6655 899999999999753 333467899999999999998 45666788899999999999987762
Q ss_pred CCCCccCCCCCceeeCCCCcccccc
Q 040238 320 EPRTDCGFSKLRIIDLSNNIFIGTL 344 (549)
Q Consensus 320 ~~~~~~~l~~L~~L~ls~n~l~~~~ 344 (549)
+..+++|+.|++++|++....
T Consensus 335 ----~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 335 ----LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp ----CCTTCCCSEEECCSSCEEHHH
T ss_pred ----chhhccCCEEEcCCCCccchh
Confidence 367889999999999987543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=268.40 Aligned_cols=307 Identities=24% Similarity=0.314 Sum_probs=170.8
Q ss_pred ccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCC
Q 040238 43 LRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYH 122 (549)
Q Consensus 43 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~ 122 (549)
+..+++|++|+++++.+.. ++ . +..+++|++|++++|.++.++. ...+++|++|++++|.++.++ .+..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~--~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-G--IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-T--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred chhcccccEEEEeCCcccc-ch-h--hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 4456677777777776652 22 2 5566777777777776665544 225666777777777666554 4666666
Q ss_pred ccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeec
Q 040238 123 LLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA 202 (549)
Q Consensus 123 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l 202 (549)
|++|++++|.+.+. +. +. .+++|+.|++++|......+. .... ++|++|++++|.+
T Consensus 112 L~~L~l~~n~i~~~-~~-~~--~l~~L~~L~l~~n~~~~~~~~--~~~l--~~L~~L~l~~~~~---------------- 167 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LA--NLTKMYSLNLGANHNLSDLSP--LSNM--TGLNYLTVTESKV---------------- 167 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GT--TCTTCCEEECTTCTTCCCCGG--GTTC--TTCCEEECCSSCC----------------
T ss_pred CCEEECcCCcccCc-hh-hc--cCCceeEEECCCCCCcccccc--hhhC--CCCcEEEecCCCc----------------
Confidence 66666666666533 22 43 566666666666643322211 0111 1133333333322
Q ss_pred ccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcE
Q 040238 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEF 282 (549)
Q Consensus 203 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~ 282 (549)
.+..+ +..+++|++|++++|.+.+. +. +.. .++|+++++++|.+++..+ +..+++|++
T Consensus 168 -----~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~-l~~L~~L~l~~n~l~~~~~------------~~~~~~L~~ 225 (347)
T 4fmz_A 168 -----KDVTP--IANLTDLYSLSLNYNQIEDI-SP-LAS-LTSLHYFTAYVNQITDITP------------VANMTRLNS 225 (347)
T ss_dssp -----CCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGG-CTTCCEEECCSSCCCCCGG------------GGGCTTCCE
T ss_pred -----CCchh--hccCCCCCEEEccCCccccc-cc-ccC-CCccceeecccCCCCCCch------------hhcCCcCCE
Confidence 21111 44555555555555555422 21 222 2245555555555443211 234455555
Q ss_pred EEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccce
Q 040238 283 LGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTG 362 (549)
Q Consensus 283 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~ 362 (549)
|++++|.+++..+ +..+++|++|++++|.+.+. ..+..++++ +.
T Consensus 226 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-----------------------------~~~~~l~~L-----~~ 269 (347)
T 4fmz_A 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-----------------------------NAVKDLTKL-----KM 269 (347)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------------------GGGTTCTTC-----CE
T ss_pred EEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-----------------------------hhHhcCCCc-----CE
Confidence 5555555543322 44445555555555544432 123333333 55
Q ss_pred EEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcC
Q 040238 363 IILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442 (549)
Q Consensus 363 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 442 (549)
|++++|.+++. +.+..+++|++|++++|.+.+..+..++.+++|+.|++++|++++..| +..+++|++|++++|++
T Consensus 270 L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 270 LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 55555555543 346778888888888888887777788888888888888888886655 77888888888888877
Q ss_pred c
Q 040238 443 T 443 (549)
Q Consensus 443 ~ 443 (549)
+
T Consensus 346 ~ 346 (347)
T 4fmz_A 346 K 346 (347)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=273.58 Aligned_cols=259 Identities=32% Similarity=0.471 Sum_probs=223.0
Q ss_pred CCcceeecccCCCCC--cCchhhhcCCCCCeEeCcC-CcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCC
Q 040238 195 PGTIHYLASNNSLTG--EIPSWICNLNILESLVLSH-NNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIP 271 (549)
Q Consensus 195 ~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 271 (549)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+. +|++|++++|.+++..|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~--------- 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPD--------- 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCG---------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCH---------
Confidence 356666666777776 7788889999999999994 888888888887765 899999999998866554
Q ss_pred ccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCC-CCceeeCCCCccccccChhhhh
Q 040238 272 RSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFS-KLRIIDLSNNIFIGTLPLKSFL 350 (549)
Q Consensus 272 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~ 350 (549)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|++.+.+|.. +.
T Consensus 120 -~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~-~~ 195 (313)
T 1ogq_A 120 -FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT-FA 195 (313)
T ss_dssp -GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-GG
T ss_pred -HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChH-Hh
Confidence 45778899999999999988888889999999999999999987766554 6677 8999999999998877754 44
Q ss_pred ccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCC
Q 040238 351 CWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT 430 (549)
Q Consensus 351 ~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 430 (549)
.+. ++.|++++|.+++..|..|..+++|++|++++|.+.+.+|. +..+++|++|++++|++++.+|..+..++
T Consensus 196 ~l~------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 196 NLN------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp GCC------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred CCc------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 443 49999999999999999999999999999999999976665 88999999999999999999999999999
Q ss_pred CCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCCCCCCC
Q 040238 431 FLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGC 475 (549)
Q Consensus 431 ~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~c 475 (549)
+|++|++++|++++.+|....++.++...+.+|+++|+.|+. .|
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999999888889999999999999998876 46
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=264.55 Aligned_cols=308 Identities=24% Similarity=0.338 Sum_probs=231.1
Q ss_pred cccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCC
Q 040238 18 SIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTS 97 (549)
Q Consensus 18 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 97 (549)
.+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++.++. ...+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n~i~~~~~---~~~l 109 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDISA---LQNL 109 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GTTC
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh----hhcCCcCCEEEccCCcccCchH---HcCC
Confidence 356788999999999988764 2 48889999999999998874322 6888999999999998877643 2368
Q ss_pred CCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCcc
Q 040238 98 QKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLL 177 (549)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~ 177 (549)
++|++|++++|.++.++. +..+++|++|++++|......+. +. .+++|++|++++|.+....+ .... ++|+
T Consensus 110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~--~l~~L~~L~l~~~~~~~~~~---~~~l--~~L~ 180 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LS--NMTGLNYLTVTESKVKDVTP---IANL--TDLY 180 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GT--TCTTCCEEECCSSCCCCCGG---GGGC--TTCS
T ss_pred CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hh--hCCCCcEEEecCCCcCCchh---hccC--CCCC
Confidence 899999999999988876 88889999999999966544443 65 88999999999998876554 1222 2377
Q ss_pred EEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccC
Q 040238 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFF 257 (549)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 257 (549)
.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +.. .++|++|++++|.++
T Consensus 181 ~L~l~~n~l~----------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~-~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 181 SLSLNYNQIE----------------------DISP-LASLTSLHYFTAYVNQITDITP--VAN-MTRLNSLKIGNNKIT 234 (347)
T ss_dssp EEECTTSCCC----------------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCC
T ss_pred EEEccCCccc----------------------cccc-ccCCCccceeecccCCCCCCch--hhc-CCcCCEEEccCCccC
Confidence 7777766554 2222 7788899999999998885443 333 448999999999887
Q ss_pred CcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCC
Q 040238 258 GTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337 (549)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 337 (549)
+.. . +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.. .+..+++|+.|++++
T Consensus 235 ~~~-----------~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 235 DLS-----------P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCG-----------G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCS
T ss_pred CCc-----------c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcC
Confidence 532 2 57889999999999999864 46788889999999998876641 124455555555555
Q ss_pred CccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCc
Q 040238 338 NIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417 (549)
Q Consensus 338 n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 417 (549)
| .+++..+..|..+++|++|++++|++++..| +..+++|+.|++++|+
T Consensus 297 n------------------------------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 297 N------------------------------QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp S------------------------------CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred C------------------------------cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 4 4555666778888999999999999986555 7888999999999998
Q ss_pred cc
Q 040238 418 FS 419 (549)
Q Consensus 418 l~ 419 (549)
++
T Consensus 345 i~ 346 (347)
T 4fmz_A 345 IK 346 (347)
T ss_dssp --
T ss_pred cc
Confidence 76
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=293.23 Aligned_cols=309 Identities=19% Similarity=0.156 Sum_probs=264.6
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
++.|++++|.+.+..+..|.++++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+.. |..+++|++|++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 130 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTVLVL 130 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEEC
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH--HcCCCCCCEEEe
Confidence 578999999998777777899999999999999999999899999999999999999999766655 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
++|.++.++...+. .+++|++|++++|.++.++. .+..+++|++|++++|.+++.. +. .+++|+.|++++|.+
T Consensus 131 ~~n~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~--~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 131 ERNDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LS--LIPSLFHANVSYNLL 204 (597)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GG--GCTTCSEEECCSSCC
T ss_pred eCCCCCCCCHHHhc-cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hh--hhhhhhhhhcccCcc
Confidence 99998877665433 68999999999999976654 7899999999999999998542 33 788999999999988
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcch
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 239 (549)
.+.... . .|+.|++++|.+....+..+++|+.|++++|.+.+ +.++..+++|+.|++++|.+.+..|..+
T Consensus 205 ~~l~~~------~--~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 STLAIP------I--AVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SEEECC------T--TCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccccCC------c--hhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 764322 2 39999999999987766667899999999999987 4778999999999999999998888887
Q ss_pred hcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccC
Q 040238 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319 (549)
Q Consensus 240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 319 (549)
..+. +|++|+|++|.+++. |..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..
T Consensus 275 ~~l~-~L~~L~Ls~N~l~~l-----------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~- 340 (597)
T 3oja_B 275 VKMQ-RLERLYISNNRLVAL-----------NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK- 340 (597)
T ss_dssp TTCS-SCCEEECTTSCCCEE-----------ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-
T ss_pred cCcc-CCCEEECCCCCCCCC-----------CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC-
Confidence 7665 899999999999753 334467899999999999998 56677888999999999999997763
Q ss_pred CCCCccCCCCCceeeCCCCccccccC
Q 040238 320 EPRTDCGFSKLRIIDLSNNIFIGTLP 345 (549)
Q Consensus 320 ~~~~~~~l~~L~~L~ls~n~l~~~~~ 345 (549)
+..+++|+.|++++|++.+...
T Consensus 341 ----~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 341 ----LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp ----CCTTCCCSEEECCSSCEEHHHH
T ss_pred ----hhhcCCCCEEEeeCCCCCChhH
Confidence 3678899999999999875433
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=253.46 Aligned_cols=288 Identities=20% Similarity=0.215 Sum_probs=182.3
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..|.. |..+++|++|++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 107 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA--FAPLVKLERLYL 107 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT--TTTCTTCCEEEC
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH--hcCCCCCCEEEC
Confidence 466777777776 3444433 56777777777777776667777777777777777777555655 677777777777
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCC--CCCcccccccCCCCcEEEccCC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQG--KVPKWLLDPNMQNLNALNISHN 157 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~L~~n 157 (549)
++|.++.++... .++|++|++++|.++.++. .+..+++|++|++++|.+.. ..+..+. .+++|+.|++++|
T Consensus 108 s~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~l~~L~~L~l~~n 181 (330)
T 1xku_A 108 SKNQLKELPEKM----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ--GMKKLSYIRIADT 181 (330)
T ss_dssp CSSCCSBCCSSC----CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG--GCTTCCEEECCSS
T ss_pred CCCcCCccChhh----cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc--CCCCcCEEECCCC
Confidence 777766554432 2577777777777766654 46677777777777777643 4455555 6777777777777
Q ss_pred cCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCc
Q 040238 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237 (549)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 237 (549)
.+..++... .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 182 ~l~~l~~~~---------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 182 NITTIPQGL---------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234 (330)
T ss_dssp CCCSCCSSC---------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccCCccc---------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh
Confidence 666544321 23444444444555555566777778888888888877755555
Q ss_pred chhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC------CCCCCEEEccC
Q 040238 238 CLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT------LPNLNVLILRS 311 (549)
Q Consensus 238 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~ 311 (549)
.+.... +|++|++++|.++ .+|.++..+++|++|++++|++++..+..|.. .+.++.+++++
T Consensus 235 ~~~~l~-~L~~L~L~~N~l~-----------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 235 SLANTP-HLRELHLNNNKLV-----------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp TGGGST-TCCEEECCSSCCS-----------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred hccCCC-CCCEEECCCCcCc-----------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 555443 6777777777775 23444566777777777777777665555533 24566666666
Q ss_pred cccccccCCCCCccCCCCCceeeCCCC
Q 040238 312 NIFYGIIKEPRTDCGFSKLRIIDLSNN 338 (549)
Q Consensus 312 n~l~~~~~~~~~~~~l~~L~~L~ls~n 338 (549)
|++......+..+..+.+++.+++++|
T Consensus 303 N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcccccccCccccccccceeEEEeccc
Confidence 665432222223344555555555554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=250.42 Aligned_cols=289 Identities=21% Similarity=0.211 Sum_probs=194.6
Q ss_pred CCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcE
Q 040238 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNA 151 (549)
Q Consensus 73 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 151 (549)
.+++.++++++.++.++... .+++++|++++|.++.++. .+..+++|++|++++|.+++..|..+. .+++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~ 104 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA--PLVKLER 104 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCE
T ss_pred CCCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc--CCCCCCE
Confidence 36778888877766655432 3577888888888776665 577778888888888887766677776 7777888
Q ss_pred EEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcC
Q 040238 152 LNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNL 231 (549)
Q Consensus 152 L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l 231 (549)
|++++|.+..++... .++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 105 L~Ls~n~l~~l~~~~---------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 105 LYLSKNQLKELPEKM---------------------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp EECCSSCCSBCCSSC---------------------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccChhh---------------------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence 888777776544331 13344444455555556666788888888888888887
Q ss_pred CC--cCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEc
Q 040238 232 SG--LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLIL 309 (549)
Q Consensus 232 ~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 309 (549)
.. ..+..+..+. +|++|++++|.++.. |..+ .++|++|++++|++++..+..+..+++|++|++
T Consensus 158 ~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l-----------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 158 KSSGIENGAFQGMK-KLSYIRIADTNITTI-----------PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CGGGBCTTGGGGCT-TCCEEECCSSCCCSC-----------CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred CccCcChhhccCCC-CcCEEECCCCccccC-----------Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 53 4444454443 788888888877642 2222 267788888888877766777777777777777
Q ss_pred cCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEc
Q 040238 310 RSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNL 389 (549)
Q Consensus 310 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 389 (549)
++|.+.+..+..+ ..+++|++|++++|++ + .+|..+..+++|++|++
T Consensus 224 s~n~l~~~~~~~~--~~l~~L~~L~L~~N~l------------------------------~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 224 SFNSISAVDNGSL--ANTPHLRELHLNNNKL------------------------------V-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp CSSCCCEECTTTG--GGSTTCCEEECCSSCC------------------------------S-SCCTTTTTCSSCCEEEC
T ss_pred CCCcCceeChhhc--cCCCCCCEEECCCCcC------------------------------c-cCChhhccCCCcCEEEC
Confidence 7777766644333 4555666665555554 3 34556677788888888
Q ss_pred cCCccccCCCcccCC------CCCCCEeeCCCCcccc--cCCcCccCCCCCcEEecccCc
Q 040238 390 QNNSLQGHIPSCLGN------LPNLESLDLSNNKFSG--QIPQQLVELTFLEFFNVSDNH 441 (549)
Q Consensus 390 ~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~ 441 (549)
++|++++..+..|.. .+.|+.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888666666643 3678888888888763 456677888888888888874
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=252.01 Aligned_cols=290 Identities=20% Similarity=0.182 Sum_probs=201.5
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
+++.++++++.+... |..+ .++|++|++++|.+++..+.. |.++++|++|++++|.++.+....+. .+++|++|
T Consensus 34 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKEI--SPDTTLLDLQNNDISELRKDD--FKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEE
T ss_pred cCCEEECCCCCcccc-CCCC--CCCCeEEECCCCcCCccCHhH--hhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEE
Confidence 577777777776633 3333 256777777777777544544 67777777777777776666443332 56777777
Q ss_pred EccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC--CCCccccccCCCCCccEEEc
Q 040238 104 GLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG--FDQHLVVLPANKGDLLTFDL 181 (549)
Q Consensus 104 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~~~~~~L~~L~L 181 (549)
++++|.++.+|..+. ++|++|++++|.++...+..+. .+++|+.|++++|.+.. ..+..+ ... +|+.|++
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~-~~l---~L~~L~l 179 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAF-DGL---KLNYLRI 179 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGS--SCSSCCEEECCSCCCBGGGSCTTSS-CSC---CCSCCBC
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhC--CCccCCEEECCCCccccCCCCcccc-cCC---ccCEEEC
Confidence 777777777776544 6777777777777755555566 77777777777777753 222211 111 3777778
Q ss_pred cCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCC
Q 040238 182 SSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIP 261 (549)
Q Consensus 182 ~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 261 (549)
++|.+.+......++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.... +|++|++++|.++
T Consensus 180 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~---- 254 (332)
T 2ft3_A 180 SEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLS---- 254 (332)
T ss_dssp CSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCC----
T ss_pred cCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCe----
Confidence 77777764434457888888888888887778888899999999999998866665665544 8999999999886
Q ss_pred CcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC------CCCCCEEEccCcccccccCCCCCccCCCCCceeeC
Q 040238 262 NTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT------LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDL 335 (549)
Q Consensus 262 ~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 335 (549)
.+|..+..+++|++|++++|++++..+..|.. .++|+.|++++|++.........+..+++|+.+++
T Consensus 255 -------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 255 -------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp -------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred -------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 23455678889999999999998776666654 36788999999988743333344577889999999
Q ss_pred CCCc
Q 040238 336 SNNI 339 (549)
Q Consensus 336 s~n~ 339 (549)
++|+
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 8875
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-35 Score=298.42 Aligned_cols=366 Identities=19% Similarity=0.143 Sum_probs=161.9
Q ss_pred CcEEECCCCCCCCccccc-ccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCccccCchhhcCCCC--
Q 040238 1 LQFLYLRLNNFSGDLLGS-IGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWK-- 73 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~-- 73 (549)
|++|||++|.+++..... +..+++|++|++++|.+.+. +++.+..+++|++|++++|.+.+..+.. ++..++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~-l~~~l~~~ 83 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC-VLQGLQTP 83 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH-HHHTTCST
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH-HHHHHhhC
Confidence 355666666665443322 55566666666666665532 3445555666666666666655322222 222233
Q ss_pred --CCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCccccc---ccCCC
Q 040238 74 --NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLD---PNMQN 148 (549)
Q Consensus 74 --~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~~l~~ 148 (549)
+|++|++++|.++..+. ..++..+..+++|++|++++|.+++..+..+.. ...++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 143 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143 (461)
T ss_dssp TCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence 35555555554332210 023444555556666666665554322222220 01234
Q ss_pred CcEEEccCCcCCCCCCcccccc-CCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhh-----cCCCCC
Q 040238 149 LNALNISHNFLTGFDQHLVVLP-ANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWIC-----NLNILE 222 (549)
Q Consensus 149 L~~L~L~~n~~~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~ 222 (549)
|++|++++|++........... ...++|++|++++|.+ .+..+..+. ..++|+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i---------------------~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI---------------------NEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC---------------------HHHHHHHHHHHHHHSCCCCC
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc---------------------chHHHHHHHHHHhcCCCCce
Confidence 5555555554443211100000 0000122222222222 111112221 244666
Q ss_pred eEeCcCCcCCCc----CCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCC----c
Q 040238 223 SLVLSHNNLSGL----LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDT----F 294 (549)
Q Consensus 223 ~L~Ls~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~----~ 294 (549)
+|++++|.+++. ++..+.... +|++|++++|.+++.....+. +..+..+++|++|++++|.+++. +
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~-----~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELC-----PGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHH-----HHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHH-----HHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 666666666542 233333323 566666666665432111000 01112356666666666666543 3
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCC---ccCCCCCceeeCCCCccccccCh---hhhhccccccccccceEEccCC
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRT---DCGFSKLRIIDLSNNIFIGTLPL---KSFLCWNAMKIVNTTGIILSNN 368 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~---~~~~~l~~l~~~~l~~L~l~~n 368 (549)
+..+..+++|++|++++|.+.+.....+. ....++|++|++++|.+.+.... ..+..++++ +.|++++|
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-----~~L~Ls~n 351 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL-----LELQISNN 351 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC-----CEEECCSS
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc-----cEEEccCC
Confidence 44445566666666666655432111110 01224566666666655432111 112222333 55555555
Q ss_pred cCcccCchhhcC-----CCCCCEEEccCCcccc----CCCcccCCCCCCCEeeCCCCccc
Q 040238 369 SFDSVIPASIAN-----LKGLQVLNLQNNSLQG----HIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 369 ~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 554433332221 3455555555555543 34444445555555555555554
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=249.43 Aligned_cols=289 Identities=18% Similarity=0.185 Sum_probs=214.4
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++++++++.++ .+|..+. ++|++|++++|.+.+..++.|.++++|++|++++|.+++..+.. |.++++|++|++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 109 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA--FSPLRKLQKLYI 109 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG--STTCTTCCEEEC
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH--hhCcCCCCEEEC
Confidence 567888888887 4455443 67888888888888777778888888888888888888665666 788888888888
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCC--CCCcccccccCCCCcEEEccCC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQG--KVPKWLLDPNMQNLNALNISHN 157 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~L~~n 157 (549)
++|.++.++... .++|++|++++|.++.+|. .+..+++|++|++++|.++. ..+..+. .+ +|+.|++++|
T Consensus 110 ~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~l-~L~~L~l~~n 182 (332)
T 2ft3_A 110 SKNHLVEIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD--GL-KLNYLRISEA 182 (332)
T ss_dssp CSSCCCSCCSSC----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC--SC-CCSCCBCCSS
T ss_pred CCCcCCccCccc----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc--CC-ccCEEECcCC
Confidence 888777655443 2688888888888877775 47788888888888888753 5566665 55 8888888888
Q ss_pred cCCCCCCccccccCCCCCccEEEccCCcCCCCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCc
Q 040238 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234 (549)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 234 (549)
++..++.... ++|++|++++|.+.+..+.. +++|++|++++|.+.+..+.++..+++|++|++++|.+. .
T Consensus 183 ~l~~l~~~~~------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 183 KLTGIPKDLP------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp BCSSCCSSSC------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred CCCccCcccc------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 8887655421 23888888888888766443 678888888888888877778888888888888888888 6
Q ss_pred CCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCC--CCcCcccCCCCCCCEEEccCc
Q 040238 235 LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS--DTFPSWLGTLPNLNVLILRSN 312 (549)
Q Consensus 235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n 312 (549)
+|..+.... +|++|++++|.+++..+..|.... .-...+.|+.|++++|.+. +..+..|..+++|+.+++++|
T Consensus 256 lp~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~----~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 256 VPAGLPDLK-LLQVVYLHTNNITKVGVNDFCPVG----FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCTTGGGCT-TCCEEECCSSCCCBCCTTSSSCSS----CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cChhhhcCc-cCCEEECCCCCCCccChhHccccc----cccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 777766554 788888888888876665552100 0112467888888888876 566777888888888888877
Q ss_pred c
Q 040238 313 I 313 (549)
Q Consensus 313 ~ 313 (549)
+
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=256.70 Aligned_cols=250 Identities=29% Similarity=0.405 Sum_probs=212.4
Q ss_pred ccEEEccCCcCCC--CCCCC---CCCcceeeccc-CCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCee
Q 040238 176 LLTFDLSSNNLQG--PLPVP---PPGTIHYLASN-NSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVL 249 (549)
Q Consensus 176 L~~L~L~~n~l~~--~~~~~---~~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 249 (549)
++.|++++|.+.+ .+|.. +++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+. +|++|
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L 130 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCCEE
Confidence 6777777777766 55543 67788888884 788888899999999999999999999988888887765 89999
Q ss_pred ecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCC-CCCEEEccCcccccccCCCCCccCCC
Q 040238 250 DLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLP-NLNVLILRSNIFYGIIKEPRTDCGFS 328 (549)
Q Consensus 250 ~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~ 328 (549)
++++|.+++.+|. .+..+++|++|++++|++++..|..+..++ +|++|++++|.+.+..+..+ ..+.
T Consensus 131 ~Ls~N~l~~~~p~----------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~ 198 (313)
T 1ogq_A 131 DFSYNALSGTLPP----------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN 198 (313)
T ss_dssp ECCSSEEESCCCG----------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC
T ss_pred eCCCCccCCcCCh----------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc
Confidence 9999999865544 457889999999999999988898898888 99999999999988776655 5565
Q ss_pred CCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCC
Q 040238 329 KLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNL 408 (549)
Q Consensus 329 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 408 (549)
|+.|++++|++.+..| ..|..++++ +.|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|
T Consensus 199 -L~~L~Ls~N~l~~~~~-~~~~~l~~L-----~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDAS-VLFGSDKNT-----QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp -CSEEECCSSEEEECCG-GGCCTTSCC-----SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred -ccEEECcCCcccCcCC-HHHhcCCCC-----CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 9999999999887655 557777777 9999999999877666 8889999999999999999999999999999
Q ss_pred CEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 409 ESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 409 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+.|++++|++++.+|.. ..+++|+.+++++|+..|..|
T Consensus 271 ~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 99999999999999986 889999999999998655544
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-33 Score=290.35 Aligned_cols=370 Identities=18% Similarity=0.119 Sum_probs=243.3
Q ss_pred CcEEECCCCCCCCc----ccccccCCCCCCEEEccCCcCCccccccc-cCCC----CCCEEeCCCCcCcc----ccCchh
Q 040238 1 LQFLYLRLNNFSGD----LLGSIGNLRSLEAIHIAKCNVSGQITSSL-RNLS----QLFFLDLAKNSYRG----TIKLDV 67 (549)
Q Consensus 1 L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~----~L~~L~Ls~n~i~~----~~~~~~ 67 (549)
|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.+.. .++..
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~- 108 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST- 108 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH-
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH-
Confidence 68999999999854 46778889999999999999986544333 3455 79999999999984 33444
Q ss_pred hcCCCCCCCeEeccCCccceeeccCCCc----CCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCCCCCC
Q 040238 68 LLTSWKNLEFLALSLNRLSVLTKATSNT----TSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQGKVP 138 (549)
Q Consensus 68 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~----~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~~~~ 138 (549)
+..+++|++|++++|.++..+...... ..++|++|++++|.++. ++..+..+++|++|++++|.+++..+
T Consensus 109 -l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 109 -LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp -TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred -HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 889999999999999776543321111 24568888888887743 34455666777777777777654333
Q ss_pred ccccc---ccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhh
Q 040238 139 KWLLD---PNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWI 215 (549)
Q Consensus 139 ~~~~~---~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 215 (549)
..+.. ...++|++|++++|.+...... .++..+
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------------------------------------------~l~~~l 223 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCR--------------------------------------------DLCGIV 223 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHH--------------------------------------------HHHHHH
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHH--------------------------------------------HHHHHH
Confidence 33320 0133555555555544321100 235566
Q ss_pred hcCCCCCeEeCcCCcCCCcCC----cchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCC
Q 040238 216 CNLNILESLVLSHNNLSGLLP----QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS 291 (549)
Q Consensus 216 ~~l~~L~~L~Ls~n~l~~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 291 (549)
..+++|++|++++|.+.+... ..+....++|++|++++|.+++.... .++..+..+++|++|++++|.+.
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~------~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG------DLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH------HHHHHHHHCTTCCEEECTTCCCH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH------HHHHHHhhCCCcceEECCCCCCc
Confidence 777888888888887764322 22222344788888888877643111 13445667888889999888886
Q ss_pred CCcCcccC-----CCCCCCEEEccCcccccccCCC--CCccCCCCCceeeCCCCccccccChhhhhccccccccccceEE
Q 040238 292 DTFPSWLG-----TLPNLNVLILRSNIFYGIIKEP--RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGII 364 (549)
Q Consensus 292 ~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~ 364 (549)
+..+..+. ..++|++|++++|.+++..... ..+..+++|++|++++|++.+..+......+.. ...+++.|+
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~~L~~L~ 376 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ-PGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS-TTCCCCEEE
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC-CCCceEEEE
Confidence 54333332 2368999999999876542111 112467899999999998865443322222210 022449999
Q ss_pred ccCCcCcc----cCchhhcCCCCCCEEEccCCccccCCCc----cc-CCCCCCCEeeCCCCcccccCC
Q 040238 365 LSNNSFDS----VIPASIANLKGLQVLNLQNNSLQGHIPS----CL-GNLPNLESLDLSNNKFSGQIP 423 (549)
Q Consensus 365 l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~-~~l~~L~~L~l~~n~l~~~~~ 423 (549)
+++|.+++ .++..+..+++|++|++++|++.+.... .+ ....+|+.|++.++.+....+
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 99999996 6788889999999999999999854221 12 234568888888877764443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=237.13 Aligned_cols=252 Identities=22% Similarity=0.213 Sum_probs=188.6
Q ss_pred EEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCc--CCcchhcCCCCCCeeecCCCc
Q 040238 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL--LPQCLGNSSDELSVLDLQGNN 255 (549)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~~L~~L~L~~n~ 255 (549)
.++++++.++......++++++|++++|.+....+..|..+++|++|++++|.+... .+..+... ++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc-cccCEEECCCCc
Confidence 444444444433222344566666666666644445567788888888888877632 24444443 378888888887
Q ss_pred cCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC-cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceee
Q 040238 256 FFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP-SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334 (549)
Q Consensus 256 l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (549)
+++ +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus 90 i~~-----------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ 156 (306)
T 2z66_A 90 VIT-----------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLK 156 (306)
T ss_dssp EEE-----------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEE
T ss_pred ccc-----------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEE
Confidence 753 24445778888888888888876554 567788888888888888877655544 6778888888
Q ss_pred CCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCC
Q 040238 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLS 414 (549)
Q Consensus 335 ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 414 (549)
+++|.+.+...+..+..++++ +.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNL-----TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCCCccccccchhHHhhCcCC-----CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 888887763333446666666 888899999988888899999999999999999998777789999999999999
Q ss_pred CCcccccCCcCccCCC-CCcEEecccCcCcccCCC
Q 040238 415 NNKFSGQIPQQLVELT-FLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 415 ~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~ 448 (549)
+|++++..|..+..++ +|++|++++|+++|.++.
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 9999999999999985 999999999999988753
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=244.25 Aligned_cols=252 Identities=19% Similarity=0.156 Sum_probs=203.9
Q ss_pred ccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCc
Q 040238 176 LLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNN 255 (549)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 255 (549)
...++.++..++.......+++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+. +|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCc
Confidence 34555555555543333356777777777777777788888999999999999999866666666554 89999999999
Q ss_pred cCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc-cccccCCCCCccCCCCCceee
Q 040238 256 FFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI-FYGIIKEPRTDCGFSKLRIID 334 (549)
Q Consensus 256 l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~ 334 (549)
+++..+.. +..+++|++|++++|+++...+..|..+++|++|++++|. +..+....+ .++++|++|+
T Consensus 135 l~~~~~~~----------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~ 202 (452)
T 3zyi_A 135 LTVIPSGA----------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF--EGLFNLKYLN 202 (452)
T ss_dssp CSBCCTTT----------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TTCTTCCEEE
T ss_pred CCccChhh----------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc--cCCCCCCEEE
Confidence 88655443 4678899999999999987777788899999999999854 444433333 7889999999
Q ss_pred CCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCC
Q 040238 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLS 414 (549)
Q Consensus 335 ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 414 (549)
+++|++.+. | .+..+++| +.|++++|.+++..|..|.++++|++|++++|++.+..+..|..+++|+.|+|+
T Consensus 203 L~~n~l~~~-~--~~~~l~~L-----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 203 LGMCNIKDM-P--NLTPLVGL-----EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp CTTSCCSSC-C--CCTTCTTC-----CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCccccc-c--cccccccc-----cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 999998743 3 24445555 999999999999999999999999999999999998889999999999999999
Q ss_pred CCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 415 NNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 415 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
+|++++..+..|..+++|+.|++++|++.|.+..
T Consensus 275 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp SSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999988888899999999999999999998763
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=241.44 Aligned_cols=250 Identities=21% Similarity=0.168 Sum_probs=195.5
Q ss_pred cEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCcc
Q 040238 177 LTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF 256 (549)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 256 (549)
..++.++..++.......++++.|++++|.+.+..+..|..+++|++|+|++|.+.+..+..+..+. +|++|+|++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcC
Confidence 3445555444433333345666666777777767777788888888888888888855555555444 788888888888
Q ss_pred CCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc-cccccCCCCCccCCCCCceeeC
Q 040238 257 FGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI-FYGIIKEPRTDCGFSKLRIIDL 335 (549)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~l 335 (549)
++..+.. +..+++|++|++++|.++...+..|..+++|++|++++|. +..+.+..+ .++++|++|++
T Consensus 125 ~~~~~~~----------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~L 192 (440)
T 3zyj_A 125 TTIPNGA----------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF--EGLSNLRYLNL 192 (440)
T ss_dssp SSCCTTT----------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TTCSSCCEEEC
T ss_pred CeeCHhH----------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh--hcccccCeecC
Confidence 7554433 4678888899999888887777788888889999998854 444433333 77888999999
Q ss_pred CCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCC
Q 040238 336 SNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415 (549)
Q Consensus 336 s~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 415 (549)
++|++. .+|. +..+++| +.|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|+.|+|++
T Consensus 193 ~~n~l~-~~~~--~~~l~~L-----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 193 AMCNLR-EIPN--LTPLIKL-----DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp TTSCCS-SCCC--CTTCSSC-----CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCcCc-cccc--cCCCccc-----CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 998876 3442 4445555 8999999999999899999999999999999999988899999999999999999
Q ss_pred CcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 416 NKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 416 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
|++++..+..|..+++|+.|++++|+|.|.|.
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99998888889999999999999999999876
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=241.04 Aligned_cols=283 Identities=20% Similarity=0.169 Sum_probs=167.1
Q ss_pred CCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCC
Q 040238 96 TSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGD 175 (549)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~ 175 (549)
.|+.....+.+++.++.+|..+. ++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+.
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~---------- 94 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEED---------- 94 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTT----------
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhc--cCCCCCEEECCCCccCccCHh----------
Confidence 34445556667777777776443 3677777777777654444555 666666666666665543322
Q ss_pred ccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCc
Q 040238 176 LLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNN 255 (549)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 255 (549)
.|..+++|++|++++|.+++ ++...+...++|++|++++|.
T Consensus 95 --------------------------------------~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 95 --------------------------------------SFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp --------------------------------------TTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCC
T ss_pred --------------------------------------hcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCC
Confidence 23334444444444444442 222211112244444444444
Q ss_pred cCCcCCCcccccCCCCccccCCCCCcEEEccCC-cCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceee
Q 040238 256 FFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN-QISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334 (549)
Q Consensus 256 l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (549)
+++..+. ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus 136 l~~l~~~---------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~ 204 (353)
T 2z80_A 136 YKTLGET---------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLI 204 (353)
T ss_dssp CSSSCSS---------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEE
T ss_pred CcccCch---------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeec
Confidence 4322110 12344555555555555 3444444455555566666666665555544433 4556666666
Q ss_pred CCCCccccccChhhhhccccccccccceEEccCCcCcccCchhh---cCCCCCCEEEccCCcccc----CCCcccCCCCC
Q 040238 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI---ANLKGLQVLNLQNNSLQG----HIPSCLGNLPN 407 (549)
Q Consensus 335 ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~ 407 (549)
+++|++. .+|...+..++++ +.|++++|.+++..+..+ ...+.++.++++++.+.+ .+|+.+..+++
T Consensus 205 l~~n~l~-~~~~~~~~~~~~L-----~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 205 LHMKQHI-LLLEIFVDVTSSV-----ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EECSCST-THHHHHHHHTTTE-----EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred CCCCccc-cchhhhhhhcccc-----cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 6666542 3444444445555 666777777666544332 345678888888888775 46778899999
Q ss_pred CCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 408 LESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 408 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
|+.|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus 279 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 99999999999944444468999999999999999998874
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-28 Score=239.00 Aligned_cols=282 Identities=16% Similarity=0.144 Sum_probs=160.2
Q ss_pred CCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCC
Q 040238 22 LRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLK 101 (549)
Q Consensus 22 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 101 (549)
|+.....+++++.++.+ |..+. ++|++|++++|.+++..+.. +.++++|++|++++|.++.+....+. .+++|+
T Consensus 30 C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~ 103 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSD--LQRCVNLQALVLTSNGINTIEEDSFS-SLGSLE 103 (353)
T ss_dssp ECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTSCCCEECTTTTT-TCTTCC
T ss_pred CCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHH--hccCCCCCEEECCCCccCccCHhhcC-CCCCCC
Confidence 44445556666665533 22222 35666666666666333333 56666666666666655554433222 456666
Q ss_pred EEEccCCCCCCCChh-hcCCCCccEEEeecCcCCCCCC-cccccccCCCCcEEEccCCc-CCCCCCccccccCCCCCccE
Q 040238 102 YIGLRSCNLTKFPNF-LQNQYHLLVLDLSDNRIQGKVP-KWLLDPNMQNLNALNISHNF-LTGFDQHLVVLPANKGDLLT 178 (549)
Q Consensus 102 ~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~~~~L~~ 178 (549)
+|++++|.++.+|.. +..+++|++|++++|+++...+ ..+. .+++|++|++++|+ +....+.. +.... +|++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~-~~~l~--~L~~ 178 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS--HLTKLQILRVGNMDTFTKIQRKD-FAGLT--FLEE 178 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCT--TCTTCCEEEEEESSSCCEECTTT-TTTCC--EEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhc--cCCCCcEEECCCCccccccCHHH-ccCCC--CCCE
Confidence 666666666666653 5666666666666666653322 2454 66666666666663 33332221 11111 1333
Q ss_pred EEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCC
Q 040238 179 FDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFG 258 (549)
Q Consensus 179 L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 258 (549)
|++++| .+.+..|..+..+++|++|++++|.+. .+|..+....++|++|++++|.+++
T Consensus 179 L~l~~n---------------------~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 179 LEIDAS---------------------DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEEEET---------------------TCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred EECCCC---------------------CcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence 333333 333344555666666777777776665 4444444434467777777776665
Q ss_pred cCCCcccccCCCCccccCCCCCcEEEccCCcCCC----CcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceee
Q 040238 259 TIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD----TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334 (549)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (549)
..+..+. .....+.++.++++++.+.+ .+|..+..+++|++|++++|.+..+....+ ..+++|++|+
T Consensus 237 ~~~~~l~-------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~ 307 (353)
T 2z80_A 237 FHFSELS-------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF--DRLTSLQKIW 307 (353)
T ss_dssp CCCC-------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred ccccccc-------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH--hcCCCCCEEE
Confidence 4433221 12335667777887777765 345667778888888888888876544333 6778888888
Q ss_pred CCCCccccccC
Q 040238 335 LSNNIFIGTLP 345 (549)
Q Consensus 335 ls~n~l~~~~~ 345 (549)
+++|++.+..|
T Consensus 308 L~~N~~~~~~~ 318 (353)
T 2z80_A 308 LHTNPWDCSCP 318 (353)
T ss_dssp CCSSCBCCCHH
T ss_pred eeCCCccCcCC
Confidence 88888776554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-30 Score=274.21 Aligned_cols=404 Identities=15% Similarity=0.056 Sum_probs=242.3
Q ss_pred ccccccCCCCCCEEEccCCcCC---cccccc------------ccCCCCCCEEeCCCCcCccccCchhhcCC-CCC-CCe
Q 040238 15 LLGSIGNLRSLEAIHIAKCNVS---GQITSS------------LRNLSQLFFLDLAKNSYRGTIKLDVLLTS-WKN-LEF 77 (549)
Q Consensus 15 ~~~~~~~l~~L~~L~Ls~n~~~---~~~~~~------------~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~-l~~-L~~ 77 (549)
.+..+.++++|++|++++|... +..|.. +..+++|++|++++|.+++..... +.. +++ |++
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~--l~~~~~~~L~~ 142 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR--LAKARADDLET 142 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH--HHHHHGGGCCE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHH--HHHhccccCcE
Confidence 3444567777888888765321 112211 226777888888877776444433 333 333 788
Q ss_pred EeccCCccceeeccCC---CcCCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCCCCC----Cccccccc
Q 040238 78 LALSLNRLSVLTKATS---NTTSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQGKV----PKWLLDPN 145 (549)
Q Consensus 78 L~Ls~n~i~~~~~~~~---~~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~ 145 (549)
|++++|. .+..... ...+++|++|++++|.++. ++.....+++|++|++++|.+++.. +..+. .
T Consensus 143 L~L~~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~--~ 218 (592)
T 3ogk_B 143 LKLDKCS--GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR--N 218 (592)
T ss_dssp EEEESCE--EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH--H
T ss_pred EECcCCC--CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh--h
Confidence 8887773 2211111 1156778888888876622 3334556777888888877775322 22333 5
Q ss_pred CCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCC---CCC---CCCCCcceeecccCCCCCcCchhhhcCC
Q 040238 146 MQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQG---PLP---VPPPGTIHYLASNNSLTGEIPSWICNLN 219 (549)
Q Consensus 146 l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~---~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 219 (549)
+++|+.|++++|.+.+.+.. .... ++|++|+++...... ..+ ..+++|+.+.+.++. ...+|..+..++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~--~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~ 293 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGF--FKAA--ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAA 293 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHH--HHHC--TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGG
T ss_pred CCCCcEEeccCccHHHHHHH--Hhhh--hHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcC
Confidence 67788888887776653321 2222 237777776432211 111 125677777777642 345667777788
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccC-----------C
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGN-----------N 288 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~-----------n 288 (549)
+|++|++++|.+.+.....+....++|++|+++ +.+... .++.....+++|++|++++ +
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~---------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR---------GLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH---------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH---------HHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 888888888886644433333444578888887 433321 1223345678888888883 4
Q ss_pred cCCCCcC-cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCC----CCccccccCh----hhhhccccccccc
Q 040238 289 QISDTFP-SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLS----NNIFIGTLPL----KSFLCWNAMKIVN 359 (549)
Q Consensus 289 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls----~n~l~~~~~~----~~~~~l~~l~~~~ 359 (549)
.+++... .....+++|++|+++.|.+++...... ...+++|+.|+++ .|.+++.... ..+..+++|
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L---- 438 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESI-GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL---- 438 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH-HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC----
T ss_pred ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH-HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC----
Confidence 5553322 223457888888887777765432222 1237788888885 5555542111 123445555
Q ss_pred cceEEccCCc--CcccCchhh-cCCCCCCEEEccCCcccc-CCCcccCCCCCCCEeeCCCCccccc-CCcCccCCCCCcE
Q 040238 360 TTGIILSNNS--FDSVIPASI-ANLKGLQVLNLQNNSLQG-HIPSCLGNLPNLESLDLSNNKFSGQ-IPQQLVELTFLEF 434 (549)
Q Consensus 360 l~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 434 (549)
+.|++++|. +++..+..+ ..+++|++|++++|++++ .++..+..+++|+.|++++|++++. ++.....+++|++
T Consensus 439 -~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 439 -RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp -CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred -CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 888887543 555444444 347889999999888875 3445567888899999999987654 3444456888999
Q ss_pred EecccCcCccc
Q 040238 435 FNVSDNHLTGL 445 (549)
Q Consensus 435 L~l~~N~l~~~ 445 (549)
|++++|+++..
T Consensus 518 L~ls~n~it~~ 528 (592)
T 3ogk_B 518 LWVQGYRASMT 528 (592)
T ss_dssp EEEESCBCCTT
T ss_pred eECcCCcCCHH
Confidence 99999987643
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=228.75 Aligned_cols=229 Identities=21% Similarity=0.210 Sum_probs=143.6
Q ss_pred cEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCc-
Q 040238 177 LTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNN- 255 (549)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~- 255 (549)
+.++.+++.++......++++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+. +|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCC
Confidence 3455555555433222244555556666666555556666777777777777777655555554443 66777776665
Q ss_pred cCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeC
Q 040238 256 FFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDL 335 (549)
Q Consensus 256 l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 335 (549)
+....+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++
T Consensus 93 l~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l 160 (285)
T 1ozn_A 93 LRSVDPA----------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFL 160 (285)
T ss_dssp CCCCCTT----------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEEC
T ss_pred ccccCHH----------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEEC
Confidence 4433222 23556666677777766666556666666666666666666655443322 44555555555
Q ss_pred CCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCC
Q 040238 336 SNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415 (549)
Q Consensus 336 s~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 415 (549)
++|+ +++..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++
T Consensus 161 ~~n~------------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 161 HGNR------------------------------ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CSSC------------------------------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCc------------------------------ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 5554 4444455567777777777777777776677777777788888888
Q ss_pred CcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 416 NKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 416 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 211 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp SCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred CcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 877765556677777788888888877776654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=238.27 Aligned_cols=253 Identities=19% Similarity=0.169 Sum_probs=218.1
Q ss_pred CcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCcccc
Q 040238 196 GTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLI 275 (549)
Q Consensus 196 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~ 275 (549)
....++..+..+.. +|..+ .+++++|+|++|.+.+..+..+..+. +|++|++++|.+++..+.. +.
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~----------~~ 120 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGA----------FN 120 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTT----------TT
T ss_pred CCcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhh----------cc
Confidence 34567777777763 45433 26899999999999977777776655 8999999999998766554 47
Q ss_pred CCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc
Q 040238 276 NCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355 (549)
Q Consensus 276 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 355 (549)
++++|++|++++|+++...+..|..+++|++|++++|.+..+.+..+ ..+++|+.|++++|+..+.++...|..+++|
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 89999999999999998888889999999999999999998866555 8899999999999887888888888888888
Q ss_pred cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEE
Q 040238 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFF 435 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 435 (549)
+.|++++|.+++. | .+..+++|++|++++|.+.+..|..|.++++|+.|++++|++++..|..|..+++|+.|
T Consensus 199 -----~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 199 -----KYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp -----CEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred -----CEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 9999999999865 3 48899999999999999998889999999999999999999999999999999999999
Q ss_pred ecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040238 436 NVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 436 ~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
++++|++++..+.. ..+..++.+.+.+||+.|+|.+
T Consensus 272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp ECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred ECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999765543 3466777888999999998864
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=228.12 Aligned_cols=279 Identities=21% Similarity=0.212 Sum_probs=168.9
Q ss_pred CEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEE
Q 040238 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (549)
+.++.+++.++.+|..+ .++|++|++++|.++...+..|. .+++|++|++++|.+....
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~----------------- 68 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKG----------------- 68 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEE-----------------
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCccc-----------------
Confidence 45666666666666543 25677777777777644344455 6677777777766654221
Q ss_pred ccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcC
Q 040238 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260 (549)
Q Consensus 181 L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 260 (549)
..+..+..+++|++|++++|.+. .+|..+.... +|++|++++|.+++..
T Consensus 69 -----------------------------~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~-~L~~L~l~~n~l~~~~ 117 (306)
T 2z66_A 69 -----------------------------CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE-QLEHLDFQHSNLKQMS 117 (306)
T ss_dssp -----------------------------EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCT-TCCEEECTTSEEESST
T ss_pred -----------------------------CcccccccccccCEEECCCCccc-cChhhcCCCC-CCCEEECCCCcccccc
Confidence 11223344455555555555554 3333333322 5555555555554332
Q ss_pred CCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccccc-ccCCCCCccCCCCCceeeCCCCc
Q 040238 261 PNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYG-IIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 261 ~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+ ..+++|++|++++|+
T Consensus 118 ~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 118 EF---------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQ 186 (306)
T ss_dssp TT---------TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSC
T ss_pred cc---------hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH--hhCcCCCEEECCCCC
Confidence 20 123455566666666666655555555566666666666666554 233333 556666666666666
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCC-CCCEeeCCCCcc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLP-NLESLDLSNNKF 418 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 418 (549)
+.+..| ..+..+++| +.|++++|.+++..+..|..+++|++|++++|++.+..|..+..++ +|+.|++++|++
T Consensus 187 l~~~~~-~~~~~l~~L-----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 187 LEQLSP-TAFNSLSSL-----QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCEECT-TTTTTCTTC-----CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cCCcCH-HHhcCCCCC-----CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 554333 335555555 6777777777777777788999999999999999988888898885 999999999999
Q ss_pred cccCC--cCccCCCCCcEEecccCcCcccCCC
Q 040238 419 SGQIP--QQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 419 ~~~~~--~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
++..+ .....+...+.+.+..+.+.|..|.
T Consensus 261 ~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 261 ACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp ECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 85432 1122234455666677777777664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=236.38 Aligned_cols=253 Identities=19% Similarity=0.189 Sum_probs=217.2
Q ss_pred CcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCcccc
Q 040238 196 GTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLI 275 (549)
Q Consensus 196 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~ 275 (549)
....++..+..+. .+|..+. ++++.|+|++|.+.+..+..+..+. +|++|+|++|.+++..+.. +.
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~----------~~ 109 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGA----------FN 109 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGG----------GT
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhh----------cc
Confidence 3456777777776 4554443 6899999999999976666666655 8999999999998665443 57
Q ss_pred CCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc
Q 040238 276 NCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355 (549)
Q Consensus 276 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 355 (549)
++++|++|++++|+++...+..|..+++|++|++++|.+..+.+..+ ..+++|+.|++++|+..+.++...|..+++|
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 89999999999999998877789999999999999999998866555 8899999999999887888888889888888
Q ss_pred cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEE
Q 040238 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFF 435 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 435 (549)
+.|++++|.++.. | .+..+++|++|++++|++++..|..|.++++|+.|++++|++++..+..|..+++|+.|
T Consensus 188 -----~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 188 -----RYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp -----CEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred -----CeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 9999999999854 4 48899999999999999998889999999999999999999999999999999999999
Q ss_pred ecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040238 436 NVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 436 ~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
++++|++++..+.. ..+..++.+.+.+||+.|+|.+
T Consensus 261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp ECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999766543 4466778888999999998854
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-28 Score=235.60 Aligned_cols=227 Identities=21% Similarity=0.236 Sum_probs=182.7
Q ss_pred cceeecccCCC-CCcCchhhh-------cCCCCCeEeCcCCcCCCcCCcchh-cCCCCCCeeecCCCccCCcCCCccccc
Q 040238 197 TIHYLASNNSL-TGEIPSWIC-------NLNILESLVLSHNNLSGLLPQCLG-NSSDELSVLDLQGNNFFGTIPNTFIKE 267 (549)
Q Consensus 197 L~~L~l~~n~~-~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~ 267 (549)
++.|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..++ ...++|++|++++|.+++. |..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~--- 140 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL--- 140 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH---
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH---
Confidence 55566666666 335566555 789999999999999988888763 4455899999999999876 4433
Q ss_pred CCCCccccCC-----CCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccC--CCCCccCCCCCceeeCCCCcc
Q 040238 268 RRIPRSLINC-----SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK--EPRTDCGFSKLRIIDLSNNIF 340 (549)
Q Consensus 268 ~~l~~~l~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~l~~L~~L~ls~n~l 340 (549)
..+ ++|++|++++|++.+..+..++.+++|++|++++|.+.+..+ ....+..+++|++|++++|++
T Consensus 141 -------~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 141 -------AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp -------HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred -------HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 333 899999999999998888899999999999999999766421 122337889999999999998
Q ss_pred cc--ccChhhhhccccccccccceEEccCCcCcccCc-hhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCc
Q 040238 341 IG--TLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIP-ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417 (549)
Q Consensus 341 ~~--~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 417 (549)
.+ .++...+..+++| +.|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++|+.|++++|+
T Consensus 214 ~~~~~~~~~~~~~l~~L-----~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 214 ETPSGVCSALAAARVQL-----QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp CCHHHHHHHHHHTTCCC-----SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred cchHHHHHHHHhcCCCC-----CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 73 3444555666666 999999999998775 56777899999999999999 7777666 899999999999
Q ss_pred ccccCCcCccCCCCCcEEecccCcCcc
Q 040238 418 FSGQIPQQLVELTFLEFFNVSDNHLTG 444 (549)
Q Consensus 418 l~~~~~~~~~~l~~L~~L~l~~N~l~~ 444 (549)
+++. |. +..+++|++|++++|++++
T Consensus 286 l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 286 LDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9966 66 8999999999999999975
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=225.72 Aligned_cols=211 Identities=19% Similarity=0.204 Sum_probs=140.8
Q ss_pred cCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCc
Q 040238 210 EIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQ 289 (549)
Q Consensus 210 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~ 289 (549)
.+|..+..+++|++|++++|.+. .+|..+..+. +|++|++++|.++ . +|..+..+++|++|++++|.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~----------lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-A----------LPASIASLNRLRELSIRACP 161 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-C----------CCGGGGGCTTCCEEEEEEET
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-c----------CcHHHhcCcCCCEEECCCCC
Confidence 44444555666666666666665 5555554443 5666666666554 1 23334555666666666655
Q ss_pred CCCCcCcccC---------CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccccccccc
Q 040238 290 ISDTFPSWLG---------TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360 (549)
Q Consensus 290 l~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l 360 (549)
+.+.+|..+. ++++|++|++++|.+..+ +.. +..+++|++|++++|++.+ +|.. +..+++|
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~--l~~l~~L~~L~L~~N~l~~-l~~~-l~~l~~L----- 231 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PAS--IANLQNLKSLKIRNSPLSA-LGPA-IHHLPKL----- 231 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGG--GGGCTTCCEEEEESSCCCC-CCGG-GGGCTTC-----
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHh--hcCCCCCCEEEccCCCCCc-Cchh-hccCCCC-----
Confidence 5555554443 266666666666666522 222 3556666666666666653 3332 5555555
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.|++++|.+.+.+|..|..+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.+++..|
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 77777777777778888888899999999998888888888888999999999999888889999999999999988877
Q ss_pred cCc
Q 040238 441 HLT 443 (549)
Q Consensus 441 ~l~ 443 (549)
.+.
T Consensus 312 ~~~ 314 (328)
T 4fcg_A 312 LQA 314 (328)
T ss_dssp GSC
T ss_pred HHH
Confidence 665
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=221.57 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=44.7
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|+.++.+++|+.+++..+.+.
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 44444455555566667788888888888888888888888888888888888877665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=231.51 Aligned_cols=259 Identities=22% Similarity=0.228 Sum_probs=137.1
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
++|++++|.++ .+|..+. ++|++|++++|.+..+. . .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 43 ~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~-~lp~-----~l~~L~~L~Ls 109 (622)
T 3g06_A 43 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSIF 109 (622)
T ss_dssp CEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCS-CCCC-----CCTTCCEEEEC
T ss_pred cEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCC-cCCC-----CCCCCCEEECc
Confidence 45566666655 3344333 55666666666555322 2 3455666666666555 2221 34555566666
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|.++.++. .+.+|++|++++|.++.+|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+..
T Consensus 110 ~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 110 SNPLTHLPA-----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp SCCCCCCCC-----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC
T ss_pred CCcCCCCCC-----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC-----ccCCCCEEECCCCCCCC
Confidence 555554433 234555555555555555542 2455555555555542 222 23445555555555554
Q ss_pred CCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhc
Q 040238 162 FDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN 241 (549)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 241 (549)
++ ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++ .+|..
T Consensus 176 l~----------------------------~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~--- 219 (622)
T 3g06_A 176 LP----------------------------MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL--- 219 (622)
T ss_dssp CC----------------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---
T ss_pred Cc----------------------------ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---
Confidence 33 334444444444444443 222 1355666666666665 33432
Q ss_pred CCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCC
Q 040238 242 SSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP 321 (549)
Q Consensus 242 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 321 (549)
.++|++|++++|.+++. | ..+++|++|++++|.++. +|. .+++|+.|++++|.+..+ +..
T Consensus 220 -~~~L~~L~Ls~N~L~~l-----------p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~l-p~~ 279 (622)
T 3g06_A 220 -PSGLKELIVSGNRLTSL-----------P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRL-PES 279 (622)
T ss_dssp -CTTCCEEECCSSCCSCC-----------C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSC-CGG
T ss_pred -CCCCCEEEccCCccCcC-----------C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcC-CHH
Confidence 23566777776666532 2 234566777777776663 333 456677777777766643 222
Q ss_pred CCccCCCCCceeeCCCCccccccC
Q 040238 322 RTDCGFSKLRIIDLSNNIFIGTLP 345 (549)
Q Consensus 322 ~~~~~l~~L~~L~ls~n~l~~~~~ 345 (549)
+.++++|+.|++++|++.+..|
T Consensus 280 --l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 280 --LIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp --GGGSCTTCEEECCSCCCCHHHH
T ss_pred --HhhccccCEEEecCCCCCCcCH
Confidence 3566777777777777665444
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-28 Score=233.48 Aligned_cols=257 Identities=15% Similarity=0.154 Sum_probs=167.1
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+..+++.+.+.......+..+++|++|++++|.+.+..|+.|.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls 88 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLN 88 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECC
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECc
Confidence 345667777765666667778899999999999998888899999999999999999986543 7889999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|.++.++. .++|++|++++|.++.++. ..+++|++|++++|.+++..+..+. .+++|++|++++|.+..
T Consensus 89 ~n~l~~l~~------~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 89 NNYVQELLV------GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp SSEEEEEEE------CTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCE
T ss_pred CCccccccC------CCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCCCCCCc
Confidence 998877663 3689999999998876653 3367889999999988876666776 78888888888888776
Q ss_pred CCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhc
Q 040238 162 FDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN 241 (549)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 241 (549)
..+..+...... |++|++++|.+++. +. ...+++|++|++++|.+++ +|..+..
T Consensus 159 ~~~~~~~~~l~~--L~~L~L~~N~l~~~----------------------~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 212 (317)
T 3o53_A 159 VNFAELAASSDT--LEHLNLQYNFIYDV----------------------KG-QVVFAKLKTLDLSSNKLAF-MGPEFQS 212 (317)
T ss_dssp EEGGGGGGGTTT--CCEEECTTSCCCEE----------------------EC-CCCCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred ccHHHHhhccCc--CCEEECCCCcCccc----------------------cc-ccccccCCEEECCCCcCCc-chhhhcc
Confidence 544322212222 55555555544421 11 1124455555555555552 2323333
Q ss_pred CCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCC-CCcCcccCCCCCCCEEEcc
Q 040238 242 SSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS-DTFPSWLGTLPNLNVLILR 310 (549)
Q Consensus 242 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~ 310 (549)
.. +|++|++++|.+++ +|..+..+++|++|++++|.+. +..+..+..+++|+.++++
T Consensus 213 l~-~L~~L~L~~N~l~~-----------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 213 AA-GVTWISLRNNKLVL-----------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GT-TCSEEECTTSCCCE-----------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cC-cccEEECcCCcccc-----------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 22 45555555555542 1222344555555555555554 3344444455555555554
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-25 Score=229.37 Aligned_cols=261 Identities=25% Similarity=0.296 Sum_probs=138.2
Q ss_pred CCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEE
Q 040238 74 NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALN 153 (549)
Q Consensus 74 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 153 (549)
++++|++++|.++.++... .++|++|++++|.++.+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l----~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL----PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV-----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC----CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC-----CCTTCCEEE
T ss_pred CCcEEEecCCCcCccChhh----CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC-----CCCCCCEEE
Confidence 3555555555555443321 1455555555555555554 3455555555555554 2222 234455555
Q ss_pred ccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCC
Q 040238 154 ISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG 233 (549)
Q Consensus 154 L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 233 (549)
+++|.+..++. .+++|+.|++++|.+.. +|. .+++|++|++++|.+++
T Consensus 108 Ls~N~l~~l~~----------------------------~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 108 IFSNPLTHLPA----------------------------LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS 155 (622)
T ss_dssp ECSCCCCCCCC----------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----------------------------CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC
Confidence 55554443322 22333333333333332 222 13667777777776663
Q ss_pred cCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc
Q 040238 234 LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI 313 (549)
Q Consensus 234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 313 (549)
+|.. .++|+.|++++|.+++. | ..+++|+.|++++|.+++ +|. .+++|+.|++++|.
T Consensus 156 -l~~~----~~~L~~L~L~~N~l~~l-----------~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 156 -LPAL----PSELCKLWAYNNQLTSL-----------P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNR 212 (622)
T ss_dssp -CCCC----CTTCCEEECCSSCCSCC-----------C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred -cCCc----cCCCCEEECCCCCCCCC-----------c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCc
Confidence 3331 23567777777766532 2 234666777777776664 222 23566666666666
Q ss_pred cccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCc
Q 040238 314 FYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNS 393 (549)
Q Consensus 314 l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 393 (549)
+..+.. .+++|+.|++++|++ ++ +| ..+++|++|++++|.
T Consensus 213 l~~l~~------~~~~L~~L~Ls~N~L------------------------------~~-lp---~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 213 LTSLPA------LPSGLKELIVSGNRL------------------------------TS-LP---VLPSELKELMVSGNR 252 (622)
T ss_dssp CSSCCC------CCTTCCEEECCSSCC------------------------------SC-CC---CCCTTCCEEECCSSC
T ss_pred ccccCC------CCCCCCEEEccCCcc------------------------------Cc-CC---CCCCcCcEEECCCCC
Confidence 654321 134555555555554 43 22 334566666666666
Q ss_pred cccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 394 LQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 394 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|
T Consensus 253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 66 3443 4466666666666666 556666666666667777666665544
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=216.81 Aligned_cols=253 Identities=22% Similarity=0.220 Sum_probs=154.5
Q ss_pred CEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEE
Q 040238 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (549)
++++.+++.++.+|..+ .++|++|++++|.+++..+..+. .+++|++|++++|.+...
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~------------------ 71 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARI------------------ 71 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEE------------------
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCcccee------------------
Confidence 45556666666565433 34566666666666544444554 555666666655554432
Q ss_pred ccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCc-CCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNN-LSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 181 L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
.+..+..+++|++|++++|. +....+..+..+. +|++|++++|.+++.
T Consensus 72 ------------------------------~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~ 120 (285)
T 1ozn_A 72 ------------------------------DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGLQEL 120 (285)
T ss_dssp ------------------------------CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT-TCCEEECTTSCCCCC
T ss_pred ------------------------------CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc-CCCEEECCCCcCCEE
Confidence 22344555666666666665 4433344443333 666677766666654
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
.+.. +..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|+
T Consensus 121 ~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 121 GPGL----------FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNR 188 (285)
T ss_dssp CTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSC
T ss_pred CHhH----------hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh--cCccccCEEECCCCc
Confidence 3332 3567777777887777776666667777888888888887776644433 455666666665555
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+. +..|..|..+++|++|++++|.+++..++.+..+++|+.|++++|++.
T Consensus 189 l~------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 189 VA------------------------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CC------------------------------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cc------------------------------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 43 344556677778888888888887666666778888888888888776
Q ss_pred ccCCcCccCCCCCcEEecccCcCcccCCCC
Q 040238 420 GQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449 (549)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 449 (549)
...+.. .-...++.+..+.+.+.|..|..
T Consensus 239 c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 239 CDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred CCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 433211 11233555566777777777743
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-28 Score=260.37 Aligned_cols=422 Identities=16% Similarity=0.083 Sum_probs=289.0
Q ss_pred CcEEECCCCCC---CCccccccc------------CCCCCCEEEccCCcCCccccccccC-CCC-CCEEeCCCCcCcccc
Q 040238 1 LQFLYLRLNNF---SGDLLGSIG------------NLRSLEAIHIAKCNVSGQITSSLRN-LSQ-LFFLDLAKNSYRGTI 63 (549)
Q Consensus 1 L~~L~Ls~n~l---~~~~~~~~~------------~l~~L~~L~Ls~n~~~~~~~~~~~~-l~~-L~~L~Ls~n~i~~~~ 63 (549)
|++|+|+++.. .+.+|..++ .+++|++|+|++|.+.+..+..+.. +++ |++|++++|.-....
T Consensus 75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~ 154 (592)
T 3ogk_B 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154 (592)
T ss_dssp CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHH
T ss_pred CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHH
Confidence 68899988642 123333332 7899999999999988776666665 444 999999998721111
Q ss_pred CchhhcCCCCCCCeEeccCCccceeecc---CCCcCCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCCC
Q 040238 64 KLDVLLTSWKNLEFLALSLNRLSVLTKA---TSNTTSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQG 135 (549)
Q Consensus 64 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~ 135 (549)
....+...+++|++|++++|.++..+.. .....+++|++|++++|.++. ++..+..+++|++|++++|.+.+
T Consensus 155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 1121346889999999999965433211 011267899999999999863 33456788999999999999874
Q ss_pred CCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCC---CCCCcceeecccCCCCCcCc
Q 040238 136 KVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV---PPPGTIHYLASNNSLTGEIP 212 (549)
Q Consensus 136 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~ 212 (549)
++..+. .+++|++|+++..................++|+.++++++... .+|. .+++|++|++++|.+.+...
T Consensus 235 -l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 235 -LVGFFK--AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp -GHHHHH--HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred -HHHHHh--hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 667777 8999999999864322111111111122234999999886332 2222 27799999999999765444
Q ss_pred -hhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCC-----------CccCCcCCCcccccCCCCccccCCCCC
Q 040238 213 -SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQG-----------NNFFGTIPNTFIKERRIPRSLINCSKL 280 (549)
Q Consensus 213 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~~~~~~~~~~l~~~l~~~~~L 280 (549)
..+..+++|++|+++ +.+.+.....+....++|++|++++ +.+++.. ++.....+++|
T Consensus 311 ~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~---------~~~l~~~~~~L 380 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG---------LIALAQGCQEL 380 (592)
T ss_dssp HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH---------HHHHHHHCTTC
T ss_pred HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH---------HHHHHhhCccC
Confidence 446789999999999 4444333334444455899999993 4444221 12223568999
Q ss_pred cEEEccCCcCCCCcCcccCC-CCCCCEEEcc----CcccccccCC---CCCccCCCCCceeeCCCCc--cccccChhhhh
Q 040238 281 EFLGLGNNQISDTFPSWLGT-LPNLNVLILR----SNIFYGIIKE---PRTDCGFSKLRIIDLSNNI--FIGTLPLKSFL 350 (549)
Q Consensus 281 ~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~~~---~~~~~~l~~L~~L~ls~n~--l~~~~~~~~~~ 350 (549)
++|+++.|.+++..+..+.. +++|++|+++ .|.+++.+.. ...+.++++|+.|++++|. +++........
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 99999999998776666655 8999999997 5555543110 0113568999999998654 44433333333
Q ss_pred ccccccccccceEEccCCcCccc-CchhhcCCCCCCEEEccCCccccC-CCcccCCCCCCCEeeCCCCcccccCCcCc-c
Q 040238 351 CWNAMKIVNTTGIILSNNSFDSV-IPASIANLKGLQVLNLQNNSLQGH-IPSCLGNLPNLESLDLSNNKFSGQIPQQL-V 427 (549)
Q Consensus 351 ~l~~l~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~ 427 (549)
.+++| +.|++++|.+++. .+..+.++++|++|++++|.+++. ++..+..+++|+.|++++|+++......+ .
T Consensus 461 ~~~~L-----~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~ 535 (592)
T 3ogk_B 461 YSPNV-----RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535 (592)
T ss_dssp SCTTC-----CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG
T ss_pred hCccc-----eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH
Confidence 35555 9999999999863 455668899999999999998754 34455678999999999999986543333 3
Q ss_pred CCCCCcEEecccCc
Q 040238 428 ELTFLEFFNVSDNH 441 (549)
Q Consensus 428 ~l~~L~~L~l~~N~ 441 (549)
.++.+....+..++
T Consensus 536 ~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 536 ARPYWNIELIPSRR 549 (592)
T ss_dssp CCTTEEEEEECCC-
T ss_pred hCCCcEEEEecCcc
Confidence 56777777766553
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=220.38 Aligned_cols=219 Identities=22% Similarity=0.133 Sum_probs=155.7
Q ss_pred CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCcc
Q 040238 194 PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRS 273 (549)
Q Consensus 194 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 273 (549)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +.. .++|++|++++|.+++.
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~-l~~L~~L~Ls~n~l~~l-------------- 95 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LES-LSTLRTLDLNNNYVQEL-------------- 95 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETT-CTTCCEEECCSSEEEEE--------------
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhh-cCCCCEEECcCCccccc--------------
Confidence 4566666677777766667778888888888888888775443 333 34788888888877642
Q ss_pred ccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccc
Q 040238 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWN 353 (549)
Q Consensus 274 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~ 353 (549)
...++|++|++++|++++..+. .+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+...+..++
T Consensus 96 -~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 96 -LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp -EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred -cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 2346788888888887765443 35678888888888877655444 66778888888888877655544444555
Q ss_pred cccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCc
Q 040238 354 AMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433 (549)
Q Consensus 354 ~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 433 (549)
.+ +.|++++|.+++..+ ...+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+
T Consensus 170 ~L-----~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 170 TL-----EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp TC-----CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred cC-----CEEECCCCcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 55 888888888876522 2347888888888888884 4444777888888888888888 4667777888888
Q ss_pred EEecccCcCcc
Q 040238 434 FFNVSDNHLTG 444 (549)
Q Consensus 434 ~L~l~~N~l~~ 444 (549)
.|++++|+++|
T Consensus 241 ~L~l~~N~~~~ 251 (317)
T 3o53_A 241 HFDLRGNGFHC 251 (317)
T ss_dssp EEECTTCCCBH
T ss_pred EEEccCCCccC
Confidence 88888888874
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=201.76 Aligned_cols=207 Identities=22% Similarity=0.254 Sum_probs=172.9
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
..+.++++++.++ .+|..+. +++++|++++|.+++..+.. +..+++|++|++++|.++...+..|.
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKA----------FHRLTKLRLLYLNDNKLQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTS----------SSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHH----------hcCCCCCCEEECCCCccCeeChhhhc
Confidence 4678888888888 5665443 47889999999887654433 47788999999999998877667778
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|++.+ ++...|..+++| +.|++++|.+++..+..|.
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVF--DQLVNLAELRLDRNQLKS-LPPRVFDSLTKL-----TYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEECCSSCCCC-CCTTTTTTCTTC-----CEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEECCCCccCe-eCHHHhCcCcCC-----CEEECCCCcCCccCHhHcc
Confidence 88999999999998887765544 778899999999998864 455567777777 8999999999988888899
Q ss_pred CCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
.+++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.|.++.
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 999999999999999977777899999999999999999977777899999999999999999998864
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-26 Score=232.18 Aligned_cols=234 Identities=25% Similarity=0.251 Sum_probs=115.5
Q ss_pred CccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceee
Q 040238 122 HLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL 201 (549)
Q Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~ 201 (549)
+|++|++++|.+++..|..|. .+++|+.|++++|.+.+..+ +... ++|+.|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~---l~~l--~~L~~L~Ls~N~l~-------------- 93 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD---LESL--STLRTLDLNNNYVQ-------------- 93 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE---CTTC--TTCCEEECCSSEEE--------------
T ss_pred CccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc---cccC--CCCCEEEecCCcCC--------------
Confidence 677777777777766666666 67777777777766553222 0111 11333333333222
Q ss_pred cccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCc
Q 040238 202 ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLE 281 (549)
Q Consensus 202 l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~ 281 (549)
+. ...++|++|++++|.+.+..+.. .++|+.|++++|.+++..|.. +..+++|+
T Consensus 94 -------~l-----~~~~~L~~L~L~~N~l~~~~~~~----l~~L~~L~L~~N~l~~~~~~~----------~~~l~~L~ 147 (487)
T 3oja_A 94 -------EL-----LVGPSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLD----------EGCRSRVQ 147 (487)
T ss_dssp -------EE-----EECTTCCEEECCSSCCCCEEECC----CSSCEEEECCSSCCCSGGGBC----------GGGGSSEE
T ss_pred -------CC-----CCCCCcCEEECcCCcCCCCCccc----cCCCCEEECCCCCCCCCCchh----------hcCCCCCC
Confidence 10 01244555555555554332221 124555555555554433222 23444555
Q ss_pred EEEccCCcCCCCcCcccC-CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccccccccc
Q 040238 282 FLGLGNNQISDTFPSWLG-TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360 (549)
Q Consensus 282 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l 360 (549)
+|++++|.+++..|..+. .+++|++|+|++|.+++..+. ..+++|+.|++
T Consensus 148 ~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~----~~l~~L~~L~L------------------------- 198 (487)
T 3oja_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDL------------------------- 198 (487)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEEC-------------------------
T ss_pred EEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc----ccCCCCCEEEC-------------------------
Confidence 555555555544444443 344455555555544443211 12333333333
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc-ccCCcCccCCCCCcEEecc
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS-GQIPQQLVELTFLEFFNVS 438 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 438 (549)
++|.+++..+ .|..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 199 -----s~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 199 -----SSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -----CSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -----CCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 3333333222 25556666666666666663 4555666666666666666665 4455555556666666554
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=204.68 Aligned_cols=211 Identities=21% Similarity=0.189 Sum_probs=132.3
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
+|++|++++|.+.+..+..+.... +|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGA----------YQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTT----------TTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHH----------ccCCcCCCEEECCCCccCccChhhhc
Confidence 345555555555433332333222 4555555555544332222 24455555555555555555445555
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccc-cChhhhhccccccccccceEEccCCcCcccCchhh
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGT-LPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI 378 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~ 378 (549)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|++.+. +| ..+..+++| +.|++++|.+++..+..|
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L-----~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLP-EYFSNLTNL-----EHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCC-GGGGGCTTC-----CEEECCSSCCCEECGGGG
T ss_pred CCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCc-hhhccCCCC-----CEEECCCCCCCcCCHHHh
Confidence 55556666665555555433332 4556666666666655432 23 335555555 677777777777666667
Q ss_pred cCCCCCC----EEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCC
Q 040238 379 ANLKGLQ----VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGK 450 (549)
Q Consensus 379 ~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~ 450 (549)
..+++|+ +|++++|.+.+..+..+. ..+|+.|++++|++++..+..|..+++|+.|++++|+++|.+|...
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred hhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 6666666 899999999966655554 4589999999999997777778999999999999999999988543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-26 Score=219.29 Aligned_cols=246 Identities=24% Similarity=0.273 Sum_probs=195.1
Q ss_pred CCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCC-CcCCcchh-------cCCCCCCeeecCCCccCCcCCCcccc
Q 040238 195 PGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS-GLLPQCLG-------NSSDELSVLDLQGNNFFGTIPNTFIK 266 (549)
Q Consensus 195 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~~~ 266 (549)
++|+.+++.+|.+ .+|..+... |+.|++++|.+. ..+|..+. .. ++|++|++++|.+++..|..+.
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~- 116 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENLEVTGTAPPPLL- 116 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEEEBCBSCCCCCSS-
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccCCcccchhHHHHH-
Confidence 3566677777777 567666554 899999999984 45565543 33 4899999999999977665430
Q ss_pred cCCCCccccCCCCCcEEEccCCcCCCCcCcccCCC-----CCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccc
Q 040238 267 ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTL-----PNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFI 341 (549)
Q Consensus 267 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 341 (549)
+..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..+..+ .++++|++|++++|++.
T Consensus 117 -------~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 117 -------EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPEL 186 (312)
T ss_dssp -------SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTC
T ss_pred -------HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcC
Confidence 27789999999999999987 7777766 899999999999998876666 78999999999999987
Q ss_pred cccC--hh-hhhccccccccccceEEccCCcCcc---cCchhhcCCCCCCEEEccCCccccCCC-cccCCCCCCCEeeCC
Q 040238 342 GTLP--LK-SFLCWNAMKIVNTTGIILSNNSFDS---VIPASIANLKGLQVLNLQNNSLQGHIP-SCLGNLPNLESLDLS 414 (549)
Q Consensus 342 ~~~~--~~-~~~~l~~l~~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~ 414 (549)
+.++ .. .+..+++| +.|++++|.+++ .....+..+++|++|++++|++.+.+| ..+..+++|+.|+++
T Consensus 187 ~~~~~~~~~~~~~l~~L-----~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 187 GERGLISALCPLKFPTL-----QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp HHHHHHHHSCTTSCTTC-----CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred cchHHHHHHHhccCCCC-----CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 6532 11 22555656 999999999984 233456788999999999999997764 567778999999999
Q ss_pred CCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCC
Q 040238 415 NNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSG 465 (549)
Q Consensus 415 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~ 465 (549)
+|+++ .+|..+. ++|++|++++|++++. |....++.++.+.+.+|+.
T Consensus 262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred CCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 99999 7777766 8999999999999977 6566667777777777754
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=229.93 Aligned_cols=220 Identities=22% Similarity=0.122 Sum_probs=179.3
Q ss_pred CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCcc
Q 040238 194 PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRS 273 (549)
Q Consensus 194 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 273 (549)
+++|++|++++|.+.+..|..|..+++|++|+|++|.+++..| +.. .++|++|++++|.+++..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~-l~~L~~L~Ls~N~l~~l~------------- 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LES-LSTLRTLDLNNNYVQELL------------- 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTT-CTTCCEEECCSSEEEEEE-------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--ccc-CCCCCEEEecCCcCCCCC-------------
Confidence 4466677777777777777889999999999999999886555 444 448999999999887532
Q ss_pred ccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccc
Q 040238 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWN 353 (549)
Q Consensus 274 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~ 353 (549)
..++|++|++++|.+++..+. .+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.+..|......++
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 237899999999999876554 45789999999999988866655 77899999999999998877765444677
Q ss_pred cccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCc
Q 040238 354 AMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433 (549)
Q Consensus 354 ~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 433 (549)
.| +.|++++|.+++..+ +..+++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+
T Consensus 170 ~L-----~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~ 240 (487)
T 3oja_A 170 TL-----EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240 (487)
T ss_dssp TC-----CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred cc-----cEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCC
Confidence 77 999999999987733 3468999999999999996544 58899999999999999995 777899999999
Q ss_pred EEecccCcCccc
Q 040238 434 FFNVSDNHLTGL 445 (549)
Q Consensus 434 ~L~l~~N~l~~~ 445 (549)
.|++++|++.|.
T Consensus 241 ~L~l~~N~l~c~ 252 (487)
T 3oja_A 241 HFDLRGNGFHCG 252 (487)
T ss_dssp EEECTTCCBCHH
T ss_pred EEEcCCCCCcCc
Confidence 999999999844
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-28 Score=259.69 Aligned_cols=403 Identities=13% Similarity=0.057 Sum_probs=178.0
Q ss_pred ccccCCCCCCEEEccCCcCCc---cc------------cccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 17 GSIGNLRSLEAIHIAKCNVSG---QI------------TSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 17 ~~~~~l~~L~~L~Ls~n~~~~---~~------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
..+.++++|++|++++|.... .. +..+..+++|++|++++|.+.+..+.. +...+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~-l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL-IAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH-HHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH-HHHhCCCCcEEeCC
Confidence 345566666666666653211 00 111234566666666666665444333 12246666666666
Q ss_pred CC-ccceeeccCCCcCCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCCCCCCccccc--ccCCCCcEEE
Q 040238 82 LN-RLSVLTKATSNTTSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLD--PNMQNLNALN 153 (549)
Q Consensus 82 ~n-~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~ 153 (549)
+| .++..+.......+++|++|++++|.++. ++.....+++|++|++++|. .......+.. ..+++|++|+
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEE
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEe
Confidence 66 22211111111145666666666665522 22222345566666666665 1111111110 1346666666
Q ss_pred ccCCcCCCCCCccccccCCCCCccEEEccCCcC-------CCCC--CCCCCCccee-ecccCCCCCcCchhhhcCCCCCe
Q 040238 154 ISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNL-------QGPL--PVPPPGTIHY-LASNNSLTGEIPSWICNLNILES 223 (549)
Q Consensus 154 L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~--~~~~~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~ 223 (549)
+++|......+. ...... +|+.|+++.+.. .+.. -..+++|+.+ .+.+. ..+.++..+..+++|++
T Consensus 218 L~~~~~~~~l~~-~~~~~~--~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 218 LNRAVPLEKLAT-LLQRAP--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTT 293 (594)
T ss_dssp CCTTSCHHHHHH-HHHHCT--TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCE
T ss_pred cCCCCcHHHHHH-HHhcCC--cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCE
Confidence 666521111111 111122 266666544321 0000 0113444444 22211 11233334445566666
Q ss_pred EeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccC---------CcCCCCc
Q 040238 224 LVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGN---------NQISDTF 294 (549)
Q Consensus 224 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~---------n~l~~~~ 294 (549)
|++++|.+.+.....+....++|++|++++| ++.. .++.....+++|++|++.+ +.+++..
T Consensus 294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~---------~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA---------GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH---------HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH---------HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 6666665443322222223345666666655 2211 0111122355666666522 2333222
Q ss_pred CcccC-CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCC--C----CccccccC-hh----hhhccccccccccce
Q 040238 295 PSWLG-TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLS--N----NIFIGTLP-LK----SFLCWNAMKIVNTTG 362 (549)
Q Consensus 295 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls--~----n~l~~~~~-~~----~~~~l~~l~~~~l~~ 362 (549)
...+. .+++|+.|.++.|.+++...... ...+++|+.|+++ + +.++ ..| .. .+..+++| +.
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L-----~~ 436 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDL-----RR 436 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTC-----CE
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHH-HhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCc-----cE
Confidence 11221 25566666555555543221111 0135566666665 2 2222 111 11 12223333 56
Q ss_pred EEccCCcCcccCchhhcC-CCCCCEEEccCCccccCCCccc-CCCCCCCEeeCCCCcccccCCc-CccCCCCCcEEeccc
Q 040238 363 IILSNNSFDSVIPASIAN-LKGLQVLNLQNNSLQGHIPSCL-GNLPNLESLDLSNNKFSGQIPQ-QLVELTFLEFFNVSD 439 (549)
Q Consensus 363 L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 439 (549)
|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++.... ....+++|+.|++++
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence 66655 444443333333 5666666666666654333333 4456666666666666433222 233456666666666
Q ss_pred CcCc
Q 040238 440 NHLT 443 (549)
Q Consensus 440 N~l~ 443 (549)
|+++
T Consensus 516 ~~~~ 519 (594)
T 2p1m_B 516 CSVS 519 (594)
T ss_dssp SCCB
T ss_pred CCCC
Confidence 6653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-28 Score=254.87 Aligned_cols=417 Identities=13% Similarity=0.088 Sum_probs=274.8
Q ss_pred CcEEECCCCCCCCc---cc------------ccccCCCCCCEEEccCCcCCcccccccc-CCCCCCEEeCCCC-cCcccc
Q 040238 1 LQFLYLRLNNFSGD---LL------------GSIGNLRSLEAIHIAKCNVSGQITSSLR-NLSQLFFLDLAKN-SYRGTI 63 (549)
Q Consensus 1 L~~L~Ls~n~l~~~---~~------------~~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n-~i~~~~ 63 (549)
|++|+++++..... .| .....+++|++|+|++|.+.+..+..+. .+++|++|++++| .+....
T Consensus 68 L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 147 (594)
T 2p1m_B 68 VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG 147 (594)
T ss_dssp CCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH
T ss_pred ceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH
Confidence 67899998753211 11 2235789999999999998877666665 7899999999998 454321
Q ss_pred CchhhcCCCCCCCeEeccCCccceeeccCC---CcCCCCCCEEEccCCCCCCCC-----hhhcCCCCccEEEeecC-cCC
Q 040238 64 KLDVLLTSWKNLEFLALSLNRLSVLTKATS---NTTSQKLKYIGLRSCNLTKFP-----NFLQNQYHLLVLDLSDN-RIQ 134 (549)
Q Consensus 64 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~---~~~~~~L~~L~l~~n~l~~l~-----~~l~~l~~L~~L~l~~n-~l~ 134 (549)
... ++.++++|++|++++|.++..+.... ...+++|++|++++|. ..++ .....+++|++|++++| .+.
T Consensus 148 l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 148 LAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 222 35689999999999997655332211 1257899999999997 3332 23455799999999998 343
Q ss_pred CCCCcccccccCCCCcEEEccCCcC-------CCCCCccccccCCCCCccEE-EccCCcCCCCCCC---CCCCcceeecc
Q 040238 135 GKVPKWLLDPNMQNLNALNISHNFL-------TGFDQHLVVLPANKGDLLTF-DLSSNNLQGPLPV---PPPGTIHYLAS 203 (549)
Q Consensus 135 ~~~~~~~~~~~l~~L~~L~L~~n~~-------~~~~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~---~~~~L~~L~l~ 203 (549)
.++..+. .+++|++|+++.+.. .+.... ...+ ++|+.+ .+..... ..++. .+++|++|+++
T Consensus 226 -~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~~--l~~~--~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 226 -KLATLLQ--RAPQLEELGTGGYTAEVRPDVYSGLSVA--LSGC--KELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp -HHHHHHH--HCTTCSEEECSBCCCCCCHHHHHHHHHH--HHTC--TTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECT
T ss_pred -HHHHHHh--cCCcceEcccccccCccchhhHHHHHHH--HhcC--CCcccccCCcccch-hhHHHHHHhhCCCCEEEcc
Confidence 3566666 889999999776532 111111 1222 237777 3333221 12222 26789999999
Q ss_pred cCCCCCcCc-hhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCC---------ccCCcCCCcccccCCCCcc
Q 040238 204 NNSLTGEIP-SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGN---------NFFGTIPNTFIKERRIPRS 273 (549)
Q Consensus 204 ~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n---------~l~~~~~~~~~~~~~l~~~ 273 (549)
+|.+.+... ..+..+++|++|++++| +.+.....+....++|++|++.++ .+++.. +...
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~---------l~~l 367 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG---------LVSV 367 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH---------HHHH
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH---------HHHH
Confidence 888765433 33567899999999988 443333334443458999999542 332211 1111
Q ss_pred ccCCCCCcEEEccCCcCCCCcCcccC-CCCCCCEEEcc--C----cccccccCC---CCCccCCCCCceeeCCCCccccc
Q 040238 274 LINCSKLEFLGLGNNQISDTFPSWLG-TLPNLNVLILR--S----NIFYGIIKE---PRTDCGFSKLRIIDLSNNIFIGT 343 (549)
Q Consensus 274 l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~---~~~~~~l~~L~~L~ls~n~l~~~ 343 (549)
...+++|++|++..|.+++.....+. .+++|+.|+++ + +.++..... ...+..+++|+.|++++ .+.+.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 23589999999999998866555554 58999999999 3 344321100 00135688999999987 55443
Q ss_pred cChhhhhccccccccccceEEccCCcCcccCchhh-cCCCCCCEEEccCCccccCCCc-ccCCCCCCCEeeCCCCccccc
Q 040238 344 LPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI-ANLKGLQVLNLQNNSLQGHIPS-CLGNLPNLESLDLSNNKFSGQ 421 (549)
Q Consensus 344 ~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 421 (549)
........+++| +.|++++|.+++..+..+ .++++|++|++++|.+++.... .+..+++|+.|++++|+++..
T Consensus 447 ~~~~l~~~~~~L-----~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 447 VFEYIGTYAKKM-----EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp HHHHHHHHCTTC-----CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred HHHHHHHhchhc-----cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 332222224555 999999999987655555 6799999999999999654333 455689999999999999654
Q ss_pred CCcCc-cCCCCCcEEecccCcCc
Q 040238 422 IPQQL-VELTFLEFFNVSDNHLT 443 (549)
Q Consensus 422 ~~~~~-~~l~~L~~L~l~~N~l~ 443 (549)
....+ ..++.|+...+..+.-.
T Consensus 522 ~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 522 ACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp HHHHHHHHCTTEEEEEECSSSCG
T ss_pred HHHHHHHhCCCCEEEEecCCCcc
Confidence 33334 45788877777766443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=198.76 Aligned_cols=207 Identities=23% Similarity=0.308 Sum_probs=170.0
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
+..++++++++++++.++ .+|..+. +.+++|++++|.+++..+. .+..+++|++|++++|.+++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLA----------TLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGG----------GGTTCTTCCEEECTTSCCCEEE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHH----------HhhcCCCCCEEECCCCccCccc
Confidence 556788888999888887 5665543 4788999999988765443 3477889999999999888654
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccC
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI 374 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~ 374 (549)
+ ...+++|++|++++|.+..+.. .+..+++|++|++++|++. .++.+.|..+++| +.|++++|.+++..
T Consensus 72 ~--~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L-----~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 72 V--DGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL-----QELYLKGNELKTLP 140 (290)
T ss_dssp C--CSCCTTCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTC-----CEEECTTSCCCCCC
T ss_pred C--CCCCCcCCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCc-ccCHHHHcCCCCC-----CEEECCCCCCCccC
Confidence 3 2678899999999998875532 2367889999999999887 4555667777777 89999999999888
Q ss_pred chhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 375 PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 375 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|..+....+|+.+++++|+|.|.+.
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 888999999999999999999777777899999999999999999 778888888999999999999998764
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=192.40 Aligned_cols=205 Identities=20% Similarity=0.241 Sum_probs=176.0
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
..+.++++++.++. +|. .+ .+++++|++++|++++..+..|..+++|++|++++|.+..+.+..+
T Consensus 17 ~~~~l~~~~~~l~~-ip~----------~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~-- 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPS----------NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF-- 81 (270)
T ss_dssp TTTEEECTTSCCSS-CCS----------CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--
T ss_pred CCCEEEccCCCCCc-cCC----------CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--
Confidence 57899999999974 332 22 2689999999999998877889999999999999999987765544
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
..+++|++|++++|++. .++...|..+++| +.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..
T Consensus 82 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQ-ALPIGVFDQLVNL-----AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp SSCTTCCEEECCSSCCC-CCCTTTTTTCSSC-----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCCCCEEECCCCcCC-cCCHhHcccccCC-----CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence 78999999999999987 4666777888777 99999999999999899999999999999999999777777999
Q ss_pred CCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC-CCCCCccCCCccCCCCCCCCCC
Q 040238 405 LPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP-GKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+++|+.|++++|++++..+..|..+++|++|++++|++++..+. ...+..++.+.+.+||+.|+++
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 99999999999999987777899999999999999999976553 2345677778888888888764
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-23 Score=195.44 Aligned_cols=204 Identities=23% Similarity=0.195 Sum_probs=173.5
Q ss_pred CCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCC
Q 040238 243 SDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322 (549)
Q Consensus 243 ~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 322 (549)
.+++++++++++.++.. |..+ .+++++|++++|.+++..+..|..+++|++|++++|.+.++...
T Consensus 9 l~~l~~l~~~~~~l~~i-----------p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTAL-----------PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-- 73 (290)
T ss_dssp STTCCEEECTTSCCSSC-----------CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--
T ss_pred cCCccEEECCCCCCCcC-----------CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--
Confidence 34799999999999743 2222 26899999999999988888999999999999999999887553
Q ss_pred CccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCccc
Q 040238 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCL 402 (549)
Q Consensus 323 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 402 (549)
..+++|+.|++++|++. .+|. .+..++++ +.|++++|++++..+..|..+++|++|++++|++++..+..|
T Consensus 74 --~~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L-----~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 74 --GTLPVLGTLDLSHNQLQ-SLPL-LGQTLPAL-----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp --SCCTTCCEEECCSSCCS-SCCC-CTTTCTTC-----CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred --CCCCcCCEEECCCCcCC-cCch-hhccCCCC-----CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 57899999999999987 5553 35666666 999999999999888999999999999999999998878889
Q ss_pred CCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 403 GNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 403 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
..+++|+.|++++|++++..+..|..+++|+.|++++|+++...+.......+..+.+.+||+.|+|.
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence 99999999999999999777777889999999999999999554444445566777888999988764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-23 Score=195.73 Aligned_cols=225 Identities=20% Similarity=0.205 Sum_probs=183.7
Q ss_pred eEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCC
Q 040238 223 SLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLP 302 (549)
Q Consensus 223 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 302 (549)
..+..+..+. .+|..+ +++|++|++++|.+++..+.. +..+++|++|++++|++++..+..+..++
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYS----------FFSFPELQVLDLSRCEIQTIEDGAYQSLS 76 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTT----------TTTCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhH----------hccccCCcEEECCCCcCCccCHHHccCCc
Confidence 3455555555 566644 347999999999998765443 47899999999999999988888899999
Q ss_pred CCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCccc-CchhhcCC
Q 040238 303 NLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV-IPASIANL 381 (549)
Q Consensus 303 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~-~~~~~~~l 381 (549)
+|++|++++|.+.+..+..+ .++++|++|++++|++.+. +...+..+++| +.|++++|.+++. +|..|..+
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L-----~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASL-ENFPIGHLKTL-----KELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp TCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTSCCCCS-TTCCCTTCTTC-----CEEECCSSCCCCCCCCGGGGGC
T ss_pred CCCEEECCCCccCccChhhh--cCCccccEEECCCCCcccc-CchhcccCCCC-----CEEECcCCccceecCchhhccC
Confidence 99999999999998876655 7899999999999998754 33346666666 9999999999875 58899999
Q ss_pred CCCCEEEccCCccccCCCcccCCCCCCC----EeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccC
Q 040238 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLE----SLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFD 456 (549)
Q Consensus 382 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~ 456 (549)
++|++|++++|++++..+..+..+++|+ .|++++|++++..+..+. ..+|+.|++++|++++..+.. ..+..++
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccccccc
Confidence 9999999999999987777887777777 899999999976665554 458999999999999765543 4466777
Q ss_pred CCccCCCCCCCCCC
Q 040238 457 NTSFDSNSGLCGRP 470 (549)
Q Consensus 457 ~~~~~~n~~lc~~~ 470 (549)
.+.+.+|++.|+++
T Consensus 228 ~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 228 KIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCcccccCC
Confidence 88888888888765
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=200.30 Aligned_cols=212 Identities=20% Similarity=0.183 Sum_probs=167.0
Q ss_pred cCCCCCeEeCcCCcCCCcCCcchh-cCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC
Q 040238 217 NLNILESLVLSHNNLSGLLPQCLG-NSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~ 295 (549)
.+++|++|++++|.+.+..|..+. ...++|++|++++|.+++..+..- ...+..+++|++|++++|++.+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------~~~~~~~~~L~~L~Ls~n~l~~~~~ 162 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------ELQQWLKPGLKVLSIAQAHSPAFSC 162 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH------HHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH------HHHhhhccCCCEEEeeCCCcchhhH
Confidence 457799999999999988888773 334489999999999986443110 0223568999999999999998888
Q ss_pred cccCCCCCCCEEEccCcccccc--cCCCCCccCCCCCceeeCCCCcccc--ccChhhhhccccccccccceEEccCCcCc
Q 040238 296 SWLGTLPNLNVLILRSNIFYGI--IKEPRTDCGFSKLRIIDLSNNIFIG--TLPLKSFLCWNAMKIVNTTGIILSNNSFD 371 (549)
Q Consensus 296 ~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~l~~l~~~~l~~L~l~~n~l~ 371 (549)
..++.+++|++|++++|++.+. .+....+..+++|++|++++|++.. ..+...+..+++| +.|++++|.++
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L-----~~L~Ls~N~l~ 237 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQP-----HSLDLSHNSLR 237 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCC-----SSEECTTSCCC
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCC-----CEEECCCCCCC
Confidence 8999999999999999997653 1122223678999999999999852 1222234566666 99999999999
Q ss_pred ccCchhhcCC---CCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcc
Q 040238 372 SVIPASIANL---KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTG 444 (549)
Q Consensus 372 ~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 444 (549)
+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9878777766 69999999999999 6677664 8999999999999954 43 6788999999999999873
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-23 Score=194.13 Aligned_cols=204 Identities=20% Similarity=0.271 Sum_probs=142.3
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
...+++|+.|++++|.+. .++ .+..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l-~~L~~L~l~~n~l~~~------------~~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYL-PNVRYLALGGNKLHDI------------SALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGC-TTCCEEECTTSCCCCC------------GGGTTCTTCCEEECTTSCCCCCC
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccC-CCCcEEECCCCCCCCc------------hhhcCCCCCCEEECCCCccCccC
Confidence 456777888888887776 233 23333 3788888888777642 13467778888888888887766
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccC
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI 374 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~ 374 (549)
+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|++. .++...+..+++| +.|++++|.+++..
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L-----~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNL-----TELDLSYNQLQSLP 173 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTTCTTC-----CEEECCSSCCCCCC
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECCCCccC-ccCHHHhccCccC-----CEEECCCCCcCccC
Confidence 6667777888888888887776655444 66777777777777765 3444445555555 77777777777666
Q ss_pred chhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 375 PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 375 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
+..|..+++|++|++++|++.+..+..+..+++|+.|++++|++.+. +++|+.+++.+|.++|.+|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 66677777778888887777766666677777788888877776643 34577777777777777764
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=188.65 Aligned_cols=212 Identities=20% Similarity=0.205 Sum_probs=142.0
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
..++++++++.+. .+|..+. +.++.|++++|.+++..+.. +..+++|++|++++|.+++..+..|.
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDAT----------FRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTT----------TTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhH----------hcCcccCCEEECCCCcCCccCHhHhc
Confidence 3566777777776 5555443 36777777777776554433 35667777777777777766666666
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
.+++|++|++++|.+.+..+..+ ..+++|++ |++++|.+++..+..|.
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~------------------------------L~L~~N~l~~~~~~~~~ 128 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVF--DHLTQLDK------------------------------LYLGGNQLKSLPSGVFD 128 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTT--TTCTTCCE------------------------------EECCSSCCCCCCTTTTT
T ss_pred cCCcCCEEECCCCcccccChhHh--cccCCCCE------------------------------EEcCCCcCCCcChhHhc
Confidence 66777777777776665543333 44445544 45555555555666788
Q ss_pred CCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCcc----
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATF---- 455 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~---- 455 (549)
.+++|++|++++|++++..+..|+.+++|+.|++++|++++..+..|..+++|+.|++++|+++|.......+..+
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 8999999999999999777778999999999999999999888888999999999999999999874432221111
Q ss_pred --CCCccCCCCCCCCCCCCCCCCCC
Q 040238 456 --DNTSFDSNSGLCGRPLSKGCESD 478 (549)
Q Consensus 456 --~~~~~~~n~~lc~~~~~~~c~~~ 478 (549)
......++ ..|+.|....|..+
T Consensus 209 ~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 209 SNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp GGGBCC--------CCGGGCBBTTS
T ss_pred ccceeeccCc-ccccCCCcCccCCC
Confidence 11112232 35666666777665
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-24 Score=209.72 Aligned_cols=84 Identities=21% Similarity=0.090 Sum_probs=57.9
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCcccc----ccccCCC-CCCEEeCCCCcCccccCchhhcCCC-----
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQIT----SSLRNLS-QLFFLDLAKNSYRGTIKLDVLLTSW----- 72 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~l----- 72 (549)
++++++|.+++.+|+.+...++|++|+|++|.+.+..+ +.|.+++ +|++|++++|.+.+..+.. +..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE--LVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH--HHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH--HHHHHhccC
Confidence 46778888887777766666668888888888876665 6677777 7888888888777544433 3332
Q ss_pred CCCCeEeccCCcccee
Q 040238 73 KNLEFLALSLNRLSVL 88 (549)
Q Consensus 73 ~~L~~L~Ls~n~i~~~ 88 (549)
++|++|++++|.++..
T Consensus 80 ~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYK 95 (362)
T ss_dssp TTCCEEECCSSCGGGS
T ss_pred CCccEEECcCCcCChH
Confidence 6666666666655443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-22 Score=187.10 Aligned_cols=205 Identities=21% Similarity=0.251 Sum_probs=174.2
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
.+..+++.++.+.+... ...+ ++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+.
T Consensus 20 ~l~~l~l~~~~~~~~~~--~~~l-~~L~~L~l~~~~i~~~------------~~l~~l~~L~~L~l~~n~l~~~--~~l~ 82 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSV------------QGIQYLPNVRYLALGGNKLHDI--SALK 82 (272)
T ss_dssp HHHHHHHTCSCTTSEEC--HHHH-TTCCEEECTTSCCCCC------------TTGGGCTTCCEEECTTSCCCCC--GGGT
T ss_pred HHHHHHhcCcccccccc--cccc-cceeeeeeCCCCcccc------------cccccCCCCcEEECCCCCCCCc--hhhc
Confidence 34566777776664433 2333 3899999999988642 2357899999999999999864 4788
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|++. .++...|..+++| +.|++++|.+++..+..|.
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~ 154 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLVENQLQ-SLPDGVFDKLTNL-----TYLNLAHNQLQSLPKGVFD 154 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCC-CCCTTTTTTCTTC-----CEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECCCCccCccChhHh--cCCcCCCEEECCCCcCC-ccCHHHhccCCCC-----CEEECCCCccCccCHHHhc
Confidence 99999999999999998766555 78999999999999987 4555667777777 9999999999988888899
Q ss_pred CCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 449 (549)
.+++|++|++++|++++..+..++.+++|+.|++++|++++..|..+..+++|+.|++++|++.|.+|..
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHH
Confidence 9999999999999999888888899999999999999999888888999999999999999999998853
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=192.67 Aligned_cols=226 Identities=15% Similarity=0.067 Sum_probs=135.0
Q ss_pred cEEECCCCCCCCcccc---cccCCCCCCEEEccCCcCCccccccc--cCCCCCCEEeCCCCcCccccCc--hhhcCCCCC
Q 040238 2 QFLYLRLNNFSGDLLG---SIGNLRSLEAIHIAKCNVSGQITSSL--RNLSQLFFLDLAKNSYRGTIKL--DVLLTSWKN 74 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~~~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~--~~~~~~l~~ 74 (549)
+.|++.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. ...+..+++
T Consensus 67 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 146 (310)
T 4glp_A 67 RRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPG 146 (310)
T ss_dssp CEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSC
T ss_pred eEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccC
Confidence 4555555555422111 12234557777777777776666666 6777777777777777654331 011346677
Q ss_pred CCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCC---CC--hhhcCCCCccEEEeecCcCCCCCCc----cccccc
Q 040238 75 LEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK---FP--NFLQNQYHLLVLDLSDNRIQGKVPK----WLLDPN 145 (549)
Q Consensus 75 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~---l~--~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~ 145 (549)
|++|++++|.+..+....+. .+++|++|++++|++.. ++ ..+..+++|++|++++|+++ ..+. .+. .
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~--~ 222 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA--A 222 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH--H
T ss_pred CCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh--c
Confidence 77777777766555443332 56677777777776532 22 22356667777777777765 2222 123 5
Q ss_pred CCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEe
Q 040238 146 MQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLV 225 (549)
Q Consensus 146 l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 225 (549)
+++|++|++++|++.+..+.........++|++|++++|.++......+++|++|++++|.+.+. |. +..+++|++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLT 300 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC-CC-TTSCCCCSCEE
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC-ch-hhhCCCccEEE
Confidence 67777777777777665332121111112377777777777733222356777777877777754 32 57789999999
Q ss_pred CcCCcCCC
Q 040238 226 LSHNNLSG 233 (549)
Q Consensus 226 Ls~n~l~~ 233 (549)
+++|.+++
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 99998874
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-22 Score=183.50 Aligned_cols=162 Identities=14% Similarity=0.112 Sum_probs=78.4
Q ss_pred cCCCCCcEEEccCCc-CCCCcCcccCCCCCCCEEEccC-cccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcc
Q 040238 275 INCSKLEFLGLGNNQ-ISDTFPSWLGTLPNLNVLILRS-NIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW 352 (549)
Q Consensus 275 ~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l 352 (549)
..+++|++|++++|+ ++...+..|..+++|++|++++ |.+.++.+..+ .++++|++|++++|++.+ +|. |..+
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f--~~l~~L~~L~l~~n~l~~-lp~--~~~l 126 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL--KELPLLKFLGIFNTGLKM-FPD--LTKV 126 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE--ECCTTCCEEEEEEECCCS-CCC--CTTC
T ss_pred cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh--CCCCCCCEEeCCCCCCcc-ccc--cccc
Confidence 334444444444443 4433333444444444444444 44444332222 344444444444444433 222 3333
Q ss_pred ccccccccceEEccCC-cCcccCchhhcCCCCCC-EEEccCCccccCCCcccCCCCCCCEeeCCCCc-ccccCCcCccCC
Q 040238 353 NAMKIVNTTGIILSNN-SFDSVIPASIANLKGLQ-VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK-FSGQIPQQLVEL 429 (549)
Q Consensus 353 ~~l~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 429 (549)
.+++. ++.|++++| .+++..+..|.++++|+ +|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+
T Consensus 127 ~~L~~--L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 127 YSTDI--FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp CBCCS--EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred ccccc--ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence 33311 125555555 55555555566666666 6666666665333333333 566666666663 554445555566
Q ss_pred -CCCcEEecccCcCcc
Q 040238 430 -TFLEFFNVSDNHLTG 444 (549)
Q Consensus 430 -~~L~~L~l~~N~l~~ 444 (549)
++|+.|++++|++++
T Consensus 204 ~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTA 219 (239)
T ss_dssp SBCCSEEECTTCCCCC
T ss_pred ccCCcEEECCCCcccc
Confidence 666666666666653
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-23 Score=203.25 Aligned_cols=242 Identities=17% Similarity=0.136 Sum_probs=150.6
Q ss_pred CcceeecccCCCCCcCc----hhhhcCC-CCCeEeCcCCcCCCcCCcchhcC----CCCCCeeecCCCccCCcCCCcccc
Q 040238 196 GTIHYLASNNSLTGEIP----SWICNLN-ILESLVLSHNNLSGLLPQCLGNS----SDELSVLDLQGNNFFGTIPNTFIK 266 (549)
Q Consensus 196 ~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~ 266 (549)
+|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+... .++|++|++++|.+++..+..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l-- 100 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL-- 100 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH--
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH--
Confidence 35555555555555555 5666677 77777887777776655555543 2467778888777765443322
Q ss_pred cCCCCccccCC-CCCcEEEccCCcCCCCcCccc----CC-CCCCCEEEccCcccccccCCCC--CccCCC-CCceeeCCC
Q 040238 267 ERRIPRSLINC-SKLEFLGLGNNQISDTFPSWL----GT-LPNLNVLILRSNIFYGIIKEPR--TDCGFS-KLRIIDLSN 337 (549)
Q Consensus 267 ~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~l~~~~~~~~--~~~~l~-~L~~L~ls~ 337 (549)
...+..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.......+ .+..++ +|++|++++
T Consensus 101 ----~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 101 ----VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp ----HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred ----HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 1223444 677888888887776554433 33 2578888888887764321111 112333 788888888
Q ss_pred CccccccChhhhhcc-ccccccccceEEccCCcCccc----CchhhcC-CCCCCEEEccCCccccCCC----cccCCCCC
Q 040238 338 NIFIGTLPLKSFLCW-NAMKIVNTTGIILSNNSFDSV----IPASIAN-LKGLQVLNLQNNSLQGHIP----SCLGNLPN 407 (549)
Q Consensus 338 n~l~~~~~~~~~~~l-~~l~~~~l~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~----~~~~~l~~ 407 (549)
|++.+..+.. +... .... .+++.|++++|.+++. ++..+.. .++|++|++++|.+.+..+ ..+..+++
T Consensus 177 n~l~~~~~~~-l~~~l~~~~-~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 177 NNLASKNCAE-LAKFLASIP-ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp SCGGGSCHHH-HHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred CCCchhhHHH-HHHHHHhCC-CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 8776544432 2221 1110 1238888888888763 3444544 4588999999998876443 34577788
Q ss_pred CCEeeCCCCccccc-------CCcCccCCCCCcEEecccCcCccc
Q 040238 408 LESLDLSNNKFSGQ-------IPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 408 L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
|+.|++++|.+.+. ++..+..+++|+.||+++|++...
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99999998884422 334677788889999999988755
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=178.57 Aligned_cols=196 Identities=21% Similarity=0.283 Sum_probs=102.0
Q ss_pred CcceeecccCCCCCcCchhhhcCCCCCeEeCcCCc-CCCcCCcchhcCCCCCCeeecCC-CccCCcCCCcccccCCCCcc
Q 040238 196 GTIHYLASNNSLTGEIPSWICNLNILESLVLSHNN-LSGLLPQCLGNSSDELSVLDLQG-NNFFGTIPNTFIKERRIPRS 273 (549)
Q Consensus 196 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~~ 273 (549)
++++|++++|.+.+..+..|.++++|++|++++|. +++..+..+.. .++|++|++++ |.+++..+..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~-l~~L~~L~l~~~n~l~~i~~~~---------- 100 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDA---------- 100 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES-CTTCCEEEEEEETTCCEECTTS----------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC-CcCCcEEECCCCCCeeEcCHHH----------
Confidence 34444444444444444455555566666666554 44222222222 22455555554 5554333222
Q ss_pred ccCCCCCcEEEccCCcCCCCcCcccCCCCCCC---EEEccCc-ccccccCCCCCccCCCCCceeeCCCCccccccChhhh
Q 040238 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLN---VLILRSN-IFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSF 349 (549)
Q Consensus 274 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 349 (549)
+..+++|++|++++|++++ +|. +..+++|+ +|++++| .+.++ +...|
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i---------------------------~~~~~ 151 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSI---------------------------PVNAF 151 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEE---------------------------CTTTT
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhc---------------------------Ccccc
Confidence 2445555555555555543 232 44444444 5555555 44444 33334
Q ss_pred hccccccccccc-eEEccCCcCcccCchhhcCCCCCCEEEccCCc-cccCCCcccCCC-CCCCEeeCCCCcccccCCcCc
Q 040238 350 LCWNAMKIVNTT-GIILSNNSFDSVIPASIANLKGLQVLNLQNNS-LQGHIPSCLGNL-PNLESLDLSNNKFSGQIPQQL 426 (549)
Q Consensus 350 ~~l~~l~~~~l~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~ 426 (549)
..++.+ + .|++++|.++...+..|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|++++ +|..
T Consensus 152 ~~l~~L-----~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~- 223 (239)
T 2xwt_C 152 QGLCNE-----TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK- 223 (239)
T ss_dssp TTTBSS-----EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-
T ss_pred cchhcc-----eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-
Confidence 444444 4 4555555555333344444 677777777774 765556667777 777777777777773 3332
Q ss_pred cCCCCCcEEecccC
Q 040238 427 VELTFLEFFNVSDN 440 (549)
Q Consensus 427 ~~l~~L~~L~l~~N 440 (549)
.+++|+.|+++++
T Consensus 224 -~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 -GLEHLKELIARNT 236 (239)
T ss_dssp -TCTTCSEEECTTC
T ss_pred -HhccCceeeccCc
Confidence 4567777777665
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=184.28 Aligned_cols=196 Identities=23% Similarity=0.328 Sum_probs=142.8
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
...+++|++|++++|.+. .++ .+..+ ++|++|++++|.+++.. . +..+++|++|++++|++++.
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l-~~L~~L~L~~n~i~~~~-----------~-~~~l~~L~~L~L~~n~l~~~- 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYL-NNLIGLELKDNQITDLA-----------P-LKNLTKITELELSGNPLKNV- 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGC-TTCCEEECCSSCCCCCG-----------G-GTTCCSCCEEECCSCCCSCC-
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhcc-CCCCEEEccCCcCCCCh-----------h-HccCCCCCEEEccCCcCCCc-
Confidence 345667777777777776 344 34333 36777777777775432 2 46677788888888877753
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccC
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI 374 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~ 374 (549)
..+..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++| +.|++++|.+++..
T Consensus 101 -~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L-----~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 101 -SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISP---LAGLTNL-----QYLSIGNAQVSDLT 167 (308)
T ss_dssp -GGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GGGCTTC-----CEEECCSSCCCCCG
T ss_pred -hhhcCCCCCCEEECCCCCCCCchh----hcCCCCCCEEECCCCccCcCcc---ccCCCCc-----cEEEccCCcCCCCh
Confidence 357777788888888887766532 3677788888888887764332 5555555 88888888887644
Q ss_pred chhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCccc
Q 040238 375 PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 375 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 4 8889999999999999985433 7888999999999999986553 78899999999999999763
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=176.16 Aligned_cols=181 Identities=25% Similarity=0.290 Sum_probs=146.6
Q ss_pred CCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccc
Q 040238 195 PGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSL 274 (549)
Q Consensus 195 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l 274 (549)
...++++++++.+.. +|..+. +.+++|++++|.+.+..+..+..+. +|++|++++|.+++..+.. +
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~----------~ 79 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGV----------F 79 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTT----------T
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcc-cCCEEECCCCcCCccCHhH----------h
Confidence 356789999998884 444443 6899999999999977776666555 8999999999998765544 4
Q ss_pred cCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccc
Q 040238 275 INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA 354 (549)
Q Consensus 275 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~ 354 (549)
..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+ ..+++|+.|++++|++
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l-------------- 143 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQL-------------- 143 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCC--------------
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCCcC--------------
Confidence 788999999999999998888889999999999999999987755444 5666776666666654
Q ss_pred ccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccccc
Q 040238 355 MKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQ 421 (549)
Q Consensus 355 l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 421 (549)
++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.+.
T Consensus 144 ----------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 144 ----------------QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ----------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ----------------CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 344555688889999999999999977777888999999999999998755
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-23 Score=206.61 Aligned_cols=241 Identities=19% Similarity=0.199 Sum_probs=145.1
Q ss_pred CcceeecccCCCCCcCc----hhhhcCCCCCeEeCcCCc---CCCcCCcchh------cCCCCCCeeecCCCccCCcCCC
Q 040238 196 GTIHYLASNNSLTGEIP----SWICNLNILESLVLSHNN---LSGLLPQCLG------NSSDELSVLDLQGNNFFGTIPN 262 (549)
Q Consensus 196 ~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~------~~~~~L~~L~L~~n~l~~~~~~ 262 (549)
+|++|++++|.+....+ ..+..+++|++|++++|. +.+.+|..+. ...++|++|++++|.+++....
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 34444444444443322 224456667777776643 3333444331 1223677777777766542111
Q ss_pred cccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC----CC---------CCCCEEEccCcccccccCC--CCCccCC
Q 040238 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG----TL---------PNLNVLILRSNIFYGIIKE--PRTDCGF 327 (549)
Q Consensus 263 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~~~~~~--~~~~~~l 327 (549)
.+|..+..+++|++|++++|.+....+..+. .+ ++|++|++++|.+...... ...+..+
T Consensus 113 ------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 113 ------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp ------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred ------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 1234456667777777777766543332222 22 6777777777766521111 0112456
Q ss_pred CCCceeeCCCCccccc----cChhhhhccccccccccceEEccCCcCc----ccCchhhcCCCCCCEEEccCCccccC--
Q 040238 328 SKLRIIDLSNNIFIGT----LPLKSFLCWNAMKIVNTTGIILSNNSFD----SVIPASIANLKGLQVLNLQNNSLQGH-- 397 (549)
Q Consensus 328 ~~L~~L~ls~n~l~~~----~~~~~~~~l~~l~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~-- 397 (549)
++|+.|++++|++... +....+..+++| +.|++++|.++ ..+|..+..+++|++|++++|.+.+.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-----~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-----KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-----CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-----cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 6777777777766421 111123344444 77777777775 55677788889999999999998865
Q ss_pred --CCccc--CCCCCCCEeeCCCCcccc----cCCcCc-cCCCCCcEEecccCcCcccCC
Q 040238 398 --IPSCL--GNLPNLESLDLSNNKFSG----QIPQQL-VELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 398 --~~~~~--~~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~p 447 (549)
++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 45666 348899999999999987 477666 568999999999999986653
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-23 Score=205.19 Aligned_cols=138 Identities=20% Similarity=0.344 Sum_probs=79.6
Q ss_pred CCCcEEEccCCcCCC-CcC---cccCCCCCCCEEEccCccccc-----ccCCCCCccCCCCCceeeCCCCccc----ccc
Q 040238 278 SKLEFLGLGNNQISD-TFP---SWLGTLPNLNVLILRSNIFYG-----IIKEPRTDCGFSKLRIIDLSNNIFI----GTL 344 (549)
Q Consensus 278 ~~L~~L~l~~n~l~~-~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~l~~L~~L~ls~n~l~----~~~ 344 (549)
++|++|++++|+++. ..+ ..+..+++|++|++++|.+.. ..+. .+..+++|+.|++++|.++ +.+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~--~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH--HhhcCCCccEEECcCCCCCcHHHHHH
Confidence 444555555554441 122 233344455555555554431 1111 1144555555555555553 222
Q ss_pred ChhhhhccccccccccceEEccCCcCccc----CchhhcC--CCCCCEEEccCCcccc----CCCccc-CCCCCCCEeeC
Q 040238 345 PLKSFLCWNAMKIVNTTGIILSNNSFDSV----IPASIAN--LKGLQVLNLQNNSLQG----HIPSCL-GNLPNLESLDL 413 (549)
Q Consensus 345 ~~~~~~~l~~l~~~~l~~L~l~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l 413 (549)
|. .+..+++| +.|++++|.+++. ++..+.. +++|++|++++|.+.+ .+|..+ .++++|+.|++
T Consensus 237 ~~-~l~~~~~L-----~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 237 AI-ALKSWPNL-----RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HH-HGGGCTTC-----CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HH-HHccCCCc-----CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 22 23344444 6666666666654 4556643 8999999999999986 377766 66899999999
Q ss_pred CCCcccccCC
Q 040238 414 SNNKFSGQIP 423 (549)
Q Consensus 414 ~~n~l~~~~~ 423 (549)
++|++++..+
T Consensus 311 ~~N~l~~~~~ 320 (386)
T 2ca6_A 311 NGNRFSEEDD 320 (386)
T ss_dssp TTSBSCTTSH
T ss_pred cCCcCCcchh
Confidence 9999986653
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-20 Score=176.55 Aligned_cols=205 Identities=22% Similarity=0.292 Sum_probs=144.0
Q ss_pred CCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccc
Q 040238 7 RLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLS 86 (549)
Q Consensus 7 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~ 86 (549)
..+.+++.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 27 ~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 27 GKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLK 98 (308)
T ss_dssp TCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCS
T ss_pred CCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCC
Confidence 344444332 245678889999998888764 3 57888889999999888874333 678888999999998877
Q ss_pred eeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCcc
Q 040238 87 VLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHL 166 (549)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 166 (549)
.++. ...+++|++|++++|.++.++. +..+++|++|++++|.+++..+ +. .+++|+.|++++|.+....+
T Consensus 99 ~~~~---~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 99 NVSA---IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LA--GLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp CCGG---GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--
T ss_pred Cchh---hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--cc--CCCCccEEEccCCcCCCChh--
Confidence 7643 2267889999999998877764 7888899999999998875433 55 78899999999988876554
Q ss_pred ccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCC
Q 040238 167 VVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDEL 246 (549)
Q Consensus 167 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 246 (549)
.... ++|+.|++++|.+.+. +. +..+++|++|++++|.+.+..+ +.. .++|
T Consensus 169 -l~~l--~~L~~L~l~~n~l~~~----------------------~~-l~~l~~L~~L~L~~N~l~~~~~--l~~-l~~L 219 (308)
T 1h6u_A 169 -LANL--SKLTTLKADDNKISDI----------------------SP-LASLPNLIEVHLKNNQISDVSP--LAN-TSNL 219 (308)
T ss_dssp -GTTC--TTCCEEECCSSCCCCC----------------------GG-GGGCTTCCEEECTTSCCCBCGG--GTT-CTTC
T ss_pred -hcCC--CCCCEEECCCCccCcC----------------------hh-hcCCCCCCEEEccCCccCcccc--ccC-CCCC
Confidence 1222 2366777666666522 22 5667777777777777764332 333 3367
Q ss_pred CeeecCCCccCC
Q 040238 247 SVLDLQGNNFFG 258 (549)
Q Consensus 247 ~~L~L~~n~l~~ 258 (549)
++|++++|.+++
T Consensus 220 ~~L~l~~N~i~~ 231 (308)
T 1h6u_A 220 FIVTLTNQTITN 231 (308)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEEccCCeeec
Confidence 777777777754
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-22 Score=197.33 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=51.6
Q ss_pred ceEEccCCc-CcccCchhhcCCCCCCEEEccCCc-cccCCCcccCCCCCCCEeeCCCCcccccCCcCccCC-CCCcEEec
Q 040238 361 TGIILSNNS-FDSVIPASIANLKGLQVLNLQNNS-LQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVEL-TFLEFFNV 437 (549)
Q Consensus 361 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l 437 (549)
+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++ ...+..+ ..++.|++
T Consensus 225 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 225 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQI 300 (336)
T ss_dssp SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEE
T ss_pred CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEE
Confidence 666666666 555556667777778888887774 22221224667777888888777 32 1233333 23666667
Q ss_pred ccCcCcccCCC
Q 040238 438 SDNHLTGLIPP 448 (549)
Q Consensus 438 ~~N~l~~~~p~ 448 (549)
++|++++..|.
T Consensus 301 ~~n~l~~~~~~ 311 (336)
T 2ast_B 301 NCSHFTTIARP 311 (336)
T ss_dssp SCCCSCCTTCS
T ss_pred ecccCccccCC
Confidence 77777776663
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-21 Score=191.47 Aligned_cols=252 Identities=21% Similarity=0.183 Sum_probs=149.1
Q ss_pred cEEECCCCCCCCcccccccCC--CCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccc-cCchhhcCCCCCCCeE
Q 040238 2 QFLYLRLNNFSGDLLGSIGNL--RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGT-IKLDVLLTSWKNLEFL 78 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L 78 (549)
+.+|++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+.+. .+.. +..+++|++|
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~--~~~~~~L~~L 123 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNL 123 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH--HTTBCCCSEE
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH--HhhCCCCCEE
Confidence 56777777665 3445555 7778888887777766554 44677788888887777644 4433 6777778888
Q ss_pred eccCCccceeeccCCCcCCCCCCEEEccCC-CCC--CCChhhcCCCCccEEEeecC-cCCCC-CCcccccccCC-CCcEE
Q 040238 79 ALSLNRLSVLTKATSNTTSQKLKYIGLRSC-NLT--KFPNFLQNQYHLLVLDLSDN-RIQGK-VPKWLLDPNMQ-NLNAL 152 (549)
Q Consensus 79 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n-~l~--~l~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~l~-~L~~L 152 (549)
++++|.++........ .+++|++|++++| .++ .++..+..+++|++|++++| .+++. .+..+. .++ +|++|
T Consensus 124 ~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~l~~~L~~L 200 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA--HVSETITQL 200 (336)
T ss_dssp ECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH--HSCTTCCEE
T ss_pred eCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH--hcccCCCEE
Confidence 8877765432222111 4677777777777 554 35556667777777777777 66543 344454 666 77777
Q ss_pred EccCCc--CCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCC-CCCcCchhhhcCCCCCeEeCcCC
Q 040238 153 NISHNF--LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNS-LTGEIPSWICNLNILESLVLSHN 229 (549)
Q Consensus 153 ~L~~n~--~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~Ls~n 229 (549)
++++|. ++.......... +++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~-----------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRR-----------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHH-----------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EeCCCcccCCHHHHHHHHhh-----------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 777763 221100001111 3344444444444 44455566777788888888877
Q ss_pred c-CCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCC-CCCcEEEccCCcCCCCcCcccCC
Q 040238 230 N-LSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC-SKLEFLGLGNNQISDTFPSWLGT 300 (549)
Q Consensus 230 ~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~ 300 (549)
. +.......+.. .++|++|++++| ++.. . +..+ ..++.|++++|++++..|..++.
T Consensus 258 ~~~~~~~~~~l~~-~~~L~~L~l~~~-i~~~---~----------~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGE-IPTLKTLQVFGI-VPDG---T----------LQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGG-CTTCCEEECTTS-SCTT---C----------HHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhc-CCCCCEEeccCc-cCHH---H----------HHHHHhhCcceEEecccCccccCCcccc
Confidence 4 22221123444 347888888877 3211 1 1112 23555667888888777766553
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=177.44 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=168.7
Q ss_pred EEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCe-eecCCCcc
Q 040238 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSV-LDLQGNNF 256 (549)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~-L~L~~n~l 256 (549)
.++.+++.++..-...++++++|++++|++....+.+|.++++|++|+|++|.+.+.+|...+...+++++ +.+++|++
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 44444444442211123456666666667665556678999999999999999877777655544445654 66777888
Q ss_pred CCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccC-cccccccCCCCCccCC-CCCceee
Q 040238 257 FGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRS-NIFYGIIKEPRTDCGF-SKLRIID 334 (549)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l-~~L~~L~ 334 (549)
++..+.. +..+++|++|++++|++....+..+....++..+++.+ +.+..+....+ ..+ ..++.|+
T Consensus 93 ~~l~~~~----------f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~ 160 (350)
T 4ay9_X 93 LYINPEA----------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILW 160 (350)
T ss_dssp CEECTTS----------BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEE
T ss_pred cccCchh----------hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhc
Confidence 7665544 47889999999999999877776677777888888866 45666554444 444 4688999
Q ss_pred CCCCccccccChhhhhccccccccccceEEccC-CcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeC
Q 040238 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSN-NSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDL 413 (549)
Q Consensus 335 ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 413 (549)
+++|++. .++..+|.. ..+ +.+++++ |.++.+.++.|.++++|++|++++|+++...+..| .+|+.|.+
T Consensus 161 L~~N~i~-~i~~~~f~~-~~L-----~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~ 230 (350)
T 4ay9_X 161 LNKNGIQ-EIHNSAFNG-TQL-----DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRA 230 (350)
T ss_dssp CCSSCCC-EECTTSSTT-EEE-----EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEEC
T ss_pred ccccccc-CCChhhccc-cch-----hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhh
Confidence 9999986 566565543 234 8888875 56666666788999999999999999995544444 55666666
Q ss_pred CCCcccccCCcCccCCCCCcEEecccC
Q 040238 414 SNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 414 ~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
.++.-.+.+| .+..+++|+.++++++
T Consensus 231 l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 231 RSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 5554444677 4788999999999765
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=175.37 Aligned_cols=82 Identities=10% Similarity=0.152 Sum_probs=43.1
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCe-Eecc
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEF-LALS 81 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~-L~Ls 81 (549)
+++.++++++ .+|..+ .+++++|+|++|+++.+.+++|.++++|++|+|++|.+.+.++.. +|.++++++. +.++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-Hhhcchhhhhhhccc
Confidence 4455555555 334433 245666666666666555555666666666666666655444433 3555555443 3334
Q ss_pred CCcccee
Q 040238 82 LNRLSVL 88 (549)
Q Consensus 82 ~n~i~~~ 88 (549)
+|+++.+
T Consensus 89 ~N~l~~l 95 (350)
T 4ay9_X 89 ANNLLYI 95 (350)
T ss_dssp ETTCCEE
T ss_pred CCccccc
Confidence 4444443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=185.69 Aligned_cols=181 Identities=24% Similarity=0.358 Sum_probs=129.0
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
+++.|++++|.+++ +|..++ ++|++|++++|.++. + | ..+++|++|++++|++++ +|. +.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~~-i----------p---~~l~~L~~L~Ls~N~l~~-ip~-l~ 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALIS-L----------P---ELPASLEYLDACDNRLST-LPE-LP 119 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCSC-C----------C---CCCTTCCEEECCSSCCSC-CCC-CC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCcc-c----------c---cccCCCCEEEccCCCCCC-cch-hh
Confidence 78888888888774 665543 368888888887762 2 2 235778888888888876 554 54
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
. +|++|++++|.++++.. .+++|+.|++++|++.+ +|. .+++| +.|++++|.+++ +|. |.
T Consensus 120 ~--~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~-lp~----~l~~L-----~~L~Ls~N~L~~-lp~-l~ 179 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTMLPE------LPALLEYINADNNQLTM-LPE----LPTSL-----EVLSVRNNQLTF-LPE-LP 179 (571)
T ss_dssp T--TCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC-CCC----CCTTC-----CEEECCSSCCSC-CCC-CC
T ss_pred c--CCCEEECCCCcCCCCCC------cCccccEEeCCCCccCc-CCC----cCCCc-----CEEECCCCCCCC-cch-hh
Confidence 4 78888888888777432 46788888888888765 453 23333 888888888876 454 55
Q ss_pred CCCCCCEEEccCCccccCCCcccCCCCCC-------CEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCLGNLPNL-------ESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
++|++|++++|+|+ .+|. |.. +| +.|++++|+++ .+|..+..+++|+.|++++|++++.+|
T Consensus 180 --~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 180 --ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp --TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred --CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 78888888888888 5655 543 66 88888888888 577777778888888888888887655
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-20 Score=166.96 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=103.1
Q ss_pred CCcEEEccCCcCCCCcC-cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccc
Q 040238 279 KLEFLGLGNNQISDTFP-SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357 (549)
Q Consensus 279 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 357 (549)
.+++|++++|++++..+ ..|..+++|++|++++|.+.++.+ ..|..+++|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~---------------------------~~~~~l~~L-- 83 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE---------------------------GAFEGASGV-- 83 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT---------------------------TTTTTCTTC--
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH---------------------------HHhCCCCCC--
Confidence 34555555555554422 234555555555555555544433 334444444
Q ss_pred cccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEec
Q 040238 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437 (549)
Q Consensus 358 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 437 (549)
+.|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++
T Consensus 84 ---~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 84 ---NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp ---CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred ---CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 55666666666677778999999999999999999888999999999999999999999888999999999999999
Q ss_pred ccCcCcccCCC
Q 040238 438 SDNHLTGLIPP 448 (549)
Q Consensus 438 ~~N~l~~~~p~ 448 (549)
++|+|.|.++.
T Consensus 161 ~~N~l~c~c~l 171 (220)
T 2v70_A 161 LANPFNCNCYL 171 (220)
T ss_dssp CSCCEECSGGG
T ss_pred cCcCCcCCCch
Confidence 99999998873
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=165.84 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=105.0
Q ss_pred CCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccc
Q 040238 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357 (549)
Q Consensus 278 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 357 (549)
+++++|++++|++++..+..|..+++|++|++++|.+.++.+..+ .++++|++|+++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls--------------------- 88 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY--------------------- 88 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC---------------------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC---------------------
Confidence 466666666666665555566666666666666666665544433 445555555554
Q ss_pred cccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEec
Q 040238 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437 (549)
Q Consensus 358 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 437 (549)
+|.+++..+..|.++++|++|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 89 ---------~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 ---------GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp ---------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---------CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 55555555667888999999999999999888899999999999999999999888888999999999999
Q ss_pred ccCcCcccCC
Q 040238 438 SDNHLTGLIP 447 (549)
Q Consensus 438 ~~N~l~~~~p 447 (549)
++|+|.|.++
T Consensus 160 ~~N~~~c~c~ 169 (220)
T 2v9t_B 160 AQNPFICDCH 169 (220)
T ss_dssp CSSCEECSGG
T ss_pred CCCCcCCCCc
Confidence 9999998775
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=160.39 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=106.7
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.++.+++.++.. |..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+.. |..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECC
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh--cCCCCCcCEEECC
Confidence 4577777777643 4333 457888888888888777777888888888888888887443333 6788888888888
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~ 160 (549)
+|.++.++...+. .+++|++|++++|.++.++. .+..+++|++|++++|.+++..+..+. .+++|+.|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCCBC
T ss_pred CCcCCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc--cCCCccEEEecCCCee
Confidence 8877765543322 56777888887777766665 356677777777777777755555555 6677777777776544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-19 Score=159.22 Aligned_cols=117 Identities=22% Similarity=0.248 Sum_probs=59.4
Q ss_pred cCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccc
Q 040238 275 INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA 354 (549)
Q Consensus 275 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~ 354 (549)
..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|++.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~------------- 137 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLK------------- 137 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCS-------------
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccc-------------
Confidence 344555555555555554444445555555555555555554433322 44555555555554433
Q ss_pred ccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCC
Q 040238 355 MKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT 430 (549)
Q Consensus 355 l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 430 (549)
+..+..|..+++|++|++++|.+. ..+++|+.|+++.|++++.+|..++.++
T Consensus 138 -----------------~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 138 -----------------SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -----------------CCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -----------------eeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 122223444555555566555444 2334556666666666666665555443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=175.90 Aligned_cols=180 Identities=25% Similarity=0.208 Sum_probs=119.9
Q ss_pred CeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCcccc-CCCCCcEEEccCCcCCCCcCcccCC
Q 040238 222 ESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLI-NCSKLEFLGLGNNQISDTFPSWLGT 300 (549)
Q Consensus 222 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~ 300 (549)
+.++++++.+. .+|..+. +.++.|+|++|.+++..+..| . .+++|++|++++|++++..+..|..
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~----------~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWT----------PTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSS----------SSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhh----------hhcccccCEEECCCCcCCccChhhccC
Confidence 56777777777 5665443 357777777777766544333 3 5677777777777777666666777
Q ss_pred CCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcC
Q 040238 301 LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIAN 380 (549)
Q Consensus 301 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~ 380 (549)
+++|++|+|++|.+..+.+..+ .++++|+.|++++|+ +++..+..|..
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~------------------------------i~~~~~~~~~~ 134 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLF--SDLQALEVLLLYNNH------------------------------IVVVDRNAFED 134 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSC------------------------------CCEECTTTTTT
T ss_pred CCCCCEEECCCCcCCcCCHHHh--CCCcCCCEEECCCCc------------------------------ccEECHHHhCC
Confidence 7777777777777766544433 455555555555554 44555667777
Q ss_pred CCCCCEEEccCCccccCCCccc---CCCCCCCEeeCCCCcccccCCcCccCCCC--CcEEecccCcCcccCC
Q 040238 381 LKGLQVLNLQNNSLQGHIPSCL---GNLPNLESLDLSNNKFSGQIPQQLVELTF--LEFFNVSDNHLTGLIP 447 (549)
Q Consensus 381 l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~p 447 (549)
+++|++|+|++|++++..+..| ..+++|+.|+|++|++++..+..+..++. ++.|++++|+|.|.+.
T Consensus 135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 8888888888888875444445 56788888888888887555556666666 3778888888877653
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=159.19 Aligned_cols=138 Identities=23% Similarity=0.216 Sum_probs=104.0
Q ss_pred CCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccc
Q 040238 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357 (549)
Q Consensus 278 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 357 (549)
++|++|++++|.+++..+..|..+++|++|++++|.+..+.+..+ ..+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L--------------------------- 90 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQL--------------------------- 90 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTC---------------------------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCc---------------------------
Confidence 566666666666666556666666666666666666544433322 344444
Q ss_pred cccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEec
Q 040238 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437 (549)
Q Consensus 358 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 437 (549)
+.|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|++
T Consensus 91 ---~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 91 ---TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp ---CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ---CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 55555555555666677889999999999999999 78888999999999999999999777788999999999999
Q ss_pred ccCcCcccCCC
Q 040238 438 SDNHLTGLIPP 448 (549)
Q Consensus 438 ~~N~l~~~~p~ 448 (549)
++|++.|.++.
T Consensus 167 ~~N~~~c~c~~ 177 (229)
T 3e6j_A 167 FGNPWDCECRD 177 (229)
T ss_dssp TTSCBCTTBGG
T ss_pred eCCCccCCcch
Confidence 99999998863
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=176.77 Aligned_cols=184 Identities=26% Similarity=0.392 Sum_probs=121.8
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
+|++|++++|++.+ +|..+ .++|++|++++|.++ .+| . .+++|++|++++|.++.++. .. .+|++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~----~l~~L~~L~Ls~N~l~~ip~--l~---~~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E----LPASLEYLDACDNRLSTLPE--LP---ASLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C----CCTTCCEEECCSSCCSCCCC--CC---TTCCEE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c----ccCCCCEEEccCCCCCCcch--hh---cCCCEE
Confidence 78888888888876 44444 377888888888887 555 3 35788888888888877655 11 288888
Q ss_pred EccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccC
Q 040238 104 GLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSS 183 (549)
Q Consensus 104 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~ 183 (549)
++++|.++.+|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++.+++. +. ++|+.|++++
T Consensus 126 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~lp~--l~-----~~L~~L~Ls~ 189 (571)
T 3cvr_A 126 DVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTFLPE--LP-----ESLEALDVST 189 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCCCC--CC-----TTCCEEECCS
T ss_pred ECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCCcch--hh-----CCCCEEECcC
Confidence 888888877887 57888888888888874 444 46788888888888887554 11 3488888888
Q ss_pred CcCCCCCCCCCCCc-------ceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcch
Q 040238 184 NNLQGPLPVPPPGT-------IHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239 (549)
Q Consensus 184 n~l~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 239 (549)
|.++. +|....+| +.|++++|.+. .+|..+..+++|+.|++++|.+++.+|..+
T Consensus 190 N~L~~-lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 190 NLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp SCCSS-CCCCC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCCCc-hhhHHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 88773 22222233 44444444444 234444445555555555555544444433
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=163.47 Aligned_cols=150 Identities=24% Similarity=0.358 Sum_probs=96.3
Q ss_pred cCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccc
Q 040238 275 INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA 354 (549)
Q Consensus 275 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~ 354 (549)
..+++|++|++++|++++..+ +..+++|++|++++|.+.+... +..+++|++|++++|++.+. ..+..+++
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~n~i~~~---~~l~~l~~ 135 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSLEHNGISDI---NGLVHLPQ 135 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG----GTTCTTCCEEECTTSCCCCC---GGGGGCTT
T ss_pred hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh----hccCCCCCEEECCCCcCCCC---hhhcCCCC
Confidence 445555555555555554332 5555555555555555544321 24555555555555555432 12334444
Q ss_pred ccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcE
Q 040238 355 MKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEF 434 (549)
Q Consensus 355 l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 434 (549)
| +.|++++|.+++. ..+..+++|++|++++|++.+..+ +..+++|+.|++++|++++ ++ .+..+++|+.
T Consensus 136 L-----~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~ 204 (291)
T 1h6t_A 136 L-----ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV 204 (291)
T ss_dssp C-----CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred C-----CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 4 6666666666654 467888889999999998885544 7888889999999998885 34 3788888999
Q ss_pred EecccCcCcc
Q 040238 435 FNVSDNHLTG 444 (549)
Q Consensus 435 L~l~~N~l~~ 444 (549)
|++++|+++.
T Consensus 205 L~l~~n~i~~ 214 (291)
T 1h6t_A 205 LELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEC
T ss_pred EECcCCcccC
Confidence 9999988875
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=155.90 Aligned_cols=136 Identities=19% Similarity=0.257 Sum_probs=106.9
Q ss_pred ceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCE
Q 040238 331 RIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLES 410 (549)
Q Consensus 331 ~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 410 (549)
+.|++++|++.+..+.+.|..++.| +.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L-----~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQL-----RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTC-----CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CEEEcCCCcCCccCchhhhccCCCC-----CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 3344444444333333334444444 66666777777777889999999999999999999888888999999999
Q ss_pred eeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040238 411 LDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 411 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
|++++|++++..|..|..+++|++|++++|++++..|.. ..+..++.+.+.+|++.|++++
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 999999999988999999999999999999999887643 4466677778888888887653
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=152.96 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=130.1
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.++.+++.++ .+|..+. ++|++|+|++|.+.+..+..|.++++|++|++++|.+.. ++.. .|..+++|++|+++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~-~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVG-VFDSLTQLTVLDLG 96 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT-TTTTCTTCCEEECC
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChh-hcccCCCcCEEECC
Confidence 56888998887 4555443 889999999999999989999999999999999999974 4433 37899999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|.++.++...+. .+++|++|++++|.++.+|..+..+++|++|++++|.+++..+..+. .+++|+.|++++|.+..
T Consensus 97 ~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFD-RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD--RLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTT-TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhC-cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHh--CCCCCCEEEeeCCCccC
Confidence 9988877665443 68899999999999999999999999999999999999876666777 88999999999998775
Q ss_pred CC
Q 040238 162 FD 163 (549)
Q Consensus 162 ~~ 163 (549)
..
T Consensus 174 ~c 175 (229)
T 3e6j_A 174 EC 175 (229)
T ss_dssp TB
T ss_pred Cc
Confidence 43
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.6e-18 Score=152.90 Aligned_cols=153 Identities=24% Similarity=0.325 Sum_probs=126.7
Q ss_pred CeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCC
Q 040238 222 ESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTL 301 (549)
Q Consensus 222 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 301 (549)
+.++++++.++ .+|..+. +++++|++++|.+++..+.. +..+++|++|++++|++++..|..|.++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~----------~~~l~~L~~L~Ls~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGA----------FSPYKKLRRIDLSNNQISELAPDAFQGL 79 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTS----------STTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhH----------hhCCCCCCEEECCCCcCCCcCHHHhhCC
Confidence 67999999998 6777553 48999999999998765544 4788999999999999998889999999
Q ss_pred CCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCC
Q 040238 302 PNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANL 381 (549)
Q Consensus 302 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l 381 (549)
++|++|+|++|.+..+.+..+ .++++|+.|++++|++ ++..+..|..+
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~N~l------------------------------~~~~~~~~~~l 127 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLF--EGLFSLQLLLLNANKI------------------------------NCLRVDAFQDL 127 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCC------------------------------CCCCTTTTTTC
T ss_pred cCCCEEECCCCcCCccCHhHc--cCCCCCCEEECCCCCC------------------------------CEeCHHHcCCC
Confidence 999999999999987755444 5566666666666554 45566778889
Q ss_pred CCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccc
Q 040238 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420 (549)
Q Consensus 382 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 420 (549)
++|++|++++|.+++..++.|..+++|+.|++++|++..
T Consensus 128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999999999997777889999999999999999874
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-18 Score=166.79 Aligned_cols=178 Identities=22% Similarity=0.246 Sum_probs=130.7
Q ss_pred cceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccC
Q 040238 197 TIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276 (549)
Q Consensus 197 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~ 276 (549)
-+.++++++.+.. +|..+ .+.++.|+|++|.+++..+..+....++|++|+|++|.+++..+.. +..
T Consensus 20 ~~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----------~~~ 86 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA----------FVP 86 (361)
T ss_dssp TTEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT----------TTT
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh----------ccC
Confidence 3678999998885 45444 3468999999999996655555424458999999999998766544 478
Q ss_pred CCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhh---ccc
Q 040238 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFL---CWN 353 (549)
Q Consensus 277 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~---~l~ 353 (549)
+++|++|++++|+++...+..|..+++|++|+|++|.+.++.+..+ .++++|+.|++++|++.+ +|...|. .++
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~ 163 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISR-FPVELIKDGNKLP 163 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCS-CCGGGTC----CT
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCe-eCHHHhcCcccCC
Confidence 9999999999999998888889999999999999999998876655 788999999999998763 5544442 233
Q ss_pred cccccccceEEccCCcCcccCchhhcCCCC--CCEEEccCCccc
Q 040238 354 AMKIVNTTGIILSNNSFDSVIPASIANLKG--LQVLNLQNNSLQ 395 (549)
Q Consensus 354 ~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~ 395 (549)
+| +.|+|++|.+++..+..|..++. ++.|++++|.+.
T Consensus 164 ~L-----~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 164 KL-----MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TC-----CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cC-----CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 33 55555555555544445555544 255555555544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=157.85 Aligned_cols=171 Identities=19% Similarity=0.197 Sum_probs=90.4
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCC
Q 040238 20 GNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQK 99 (549)
Q Consensus 20 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 99 (549)
..+++|++|++++|.+... +.+..+++|++|++++|.+++..+ +..+++|++|++++|.++.++. ...+++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~ 113 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDLSS---LKDLKK 113 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCGGG---GTTCTT
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCcCCCChh---hccCCC
Confidence 3455566666666655543 235555666666666665553222 4555666666666665554332 124555
Q ss_pred CCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 100 LKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 100 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
|++|++++|.++.++ .+..+++|++|++++|.+++. ..+. .+++|+.|++++|.+.+..+ .... ++|+.|
T Consensus 114 L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~--~l~~L~~L~L~~N~l~~~~~---l~~l--~~L~~L 183 (291)
T 1h6t_A 114 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISDIVP---LAGL--TKLQNL 183 (291)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCCCGG---GTTC--TTCCEE
T ss_pred CCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhc--cCCCCCEEEccCCccccchh---hcCC--CccCEE
Confidence 666666666555542 455555666666666665533 3344 55666666666665555433 1112 226666
Q ss_pred EccCCcCCCCCC-CCCCCcceeecccCCCCC
Q 040238 180 DLSSNNLQGPLP-VPPPGTIHYLASNNSLTG 209 (549)
Q Consensus 180 ~L~~n~l~~~~~-~~~~~L~~L~l~~n~~~~ 209 (549)
++++|.+++... ..+++|+.|++++|.+..
T Consensus 184 ~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 184 YLSKNHISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred ECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence 666665554311 125566666666666554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=174.02 Aligned_cols=171 Identities=25% Similarity=0.340 Sum_probs=86.1
Q ss_pred hcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC
Q 040238 216 CNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295 (549)
Q Consensus 216 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~ 295 (549)
..++.|+.|++++|.+. .++ .+..+ ++|+.|+|++|.+++..+ +..+++|+.|+|++|.+.+.
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l-~~L~~L~Ls~N~l~~~~~------------l~~l~~L~~L~Ls~N~l~~l-- 102 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYL-PNVTKLFLNGNKLTDIKP------------LTNLKNLGWLFLDENKIKDL-- 102 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGC-TTCCEEECTTSCCCCCGG------------GGGCTTCCEEECCSSCCCCC--
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccC-CCCCEEEeeCCCCCCChh------------hccCCCCCEEECcCCCCCCC--
Confidence 44556666666666655 223 23332 256666666665543221 34556666666666665532
Q ss_pred cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCc
Q 040238 296 SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIP 375 (549)
Q Consensus 296 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~ 375 (549)
..+..+++|+.|+|++|.+.++. .+..+++|+.|++++|.+.+. ..+..+++| +.|+|++|.+.+..|
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L-----~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI---TVLSRLTKL-----DTLSLEDNQISDIVP 170 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC---GGGGSCTTC-----SEEECCSSCCCCCGG
T ss_pred hhhccCCCCCEEEecCCCCCCCc----cccCCCccCEEECCCCccCCc---hhhcccCCC-----CEEECcCCcCCCchh
Confidence 24555566666666666555431 124555555555555555432 223333333 444555555544333
Q ss_pred hhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 376 ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 376 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 45555555555555555432 23455555555555555554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=172.80 Aligned_cols=191 Identities=20% Similarity=0.284 Sum_probs=158.4
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
.+..+.++.+.+.+..+. ..+ ++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +.
T Consensus 22 ~l~~l~l~~~~i~~~~~~--~~L-~~L~~L~l~~n~i~~l-----------~-~l~~l~~L~~L~Ls~N~l~~~~~--l~ 84 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ--NEL-NSIDQIIANNSDIKSV-----------Q-GIQYLPNVTKLFLNGNKLTDIKP--LT 84 (605)
T ss_dssp HHHHHHTTCSCTTSEECH--HHH-TTCCCCBCTTCCCCCC-----------T-TGGGCTTCCEEECTTSCCCCCGG--GG
T ss_pred HHHHHhccCCCcccccch--hcC-CCCCEEECcCCCCCCC-----------h-HHccCCCCCEEEeeCCCCCCChh--hc
Confidence 355567777777654442 233 3799999999998643 2 35789999999999999997655 88
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
.+++|+.|+|++|.+.+.. .+..+++|+.|++++|++.+. ..+..+++| +.|+|++|.+++. ..+.
T Consensus 85 ~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L-----~~L~Ls~N~l~~l--~~l~ 150 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDLS----SLKDLKKLKSLSLEHNGISDI---NGLVHLPQL-----ESLYLGNNKITDI--TVLS 150 (605)
T ss_dssp GCTTCCEEECCSSCCCCCT----TSTTCTTCCEEECTTSCCCCC---GGGGGCTTC-----SEEECCSSCCCCC--GGGG
T ss_pred cCCCCCEEECcCCCCCCCh----hhccCCCCCEEEecCCCCCCC---ccccCCCcc-----CEEECCCCccCCc--hhhc
Confidence 9999999999999998753 347899999999999998753 236666666 9999999999976 6789
Q ss_pred CCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCccc
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
.+++|+.|+|++|.+.+..| +..+++|+.|+|++|++++. | .+..+++|+.|+|++|++++.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 99999999999999997665 89999999999999999964 3 589999999999999999865
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-18 Score=152.92 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=109.7
Q ss_pred cEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccccccccc
Q 040238 281 EFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360 (549)
Q Consensus 281 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l 360 (549)
+++++++|+++ .+|..+. .+|++|++++|.+.+..+. +.|..++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~--------------------------~~~~~l~~L----- 56 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSD--------------------------GLFGRLPHL----- 56 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCS--------------------------CSGGGCTTC-----
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCc--------------------------cccccCCCC-----
Confidence 56777777775 3444332 2666666666666554332 223333333
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|+.|++++|++++..|..|..+++|++|++++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 55556666666677788999999999999999999888888999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 441 HLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 441 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+|+|.++.......+....+.++...|+.|
T Consensus 137 ~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 137 PFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999988743211122222333444455544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=146.36 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=104.1
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
+|++|++++|.++.. | .+..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+..+
T Consensus 45 ~L~~L~l~~n~i~~l-----------~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l-- 108 (197)
T 4ezg_A 45 SLTYITLANINVTDL-----------T-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL-- 108 (197)
T ss_dssp TCCEEEEESSCCSCC-----------T-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC--
T ss_pred CccEEeccCCCccCh-----------H-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh--
Confidence 677788877777521 2 24667777777777776653 2356677777777777777766444433
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCc-cccCCCcccC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNS-LQGHIPSCLG 403 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 403 (549)
..+++|++|++++|++ ++..+..+..+++|++|++++|. +. .+| .+.
T Consensus 109 ~~l~~L~~L~Ls~n~i------------------------------~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~ 156 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAH------------------------------DDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK 156 (197)
T ss_dssp TTCTTCCEEECCSSBC------------------------------BGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG
T ss_pred cCCCCCCEEEecCCcc------------------------------CcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc
Confidence 4556666665555554 44556677888899999999998 55 555 588
Q ss_pred CCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcc
Q 040238 404 NLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTG 444 (549)
Q Consensus 404 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 444 (549)
.+++|+.|++++|++++ ++ .+..+++|+.|++++|++..
T Consensus 157 ~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 88999999999999885 33 67888999999999998753
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=144.85 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=97.4
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCC
Q 040238 20 GNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQK 99 (549)
Q Consensus 20 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 99 (549)
..+++|++|++++|.+... | .+..+++|++|++++|.++. .+ . +..+++|++|++++|.++........ .+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~-~~-~--l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN-YN-P--ISGLSNLERLRIMGKDVTSDKIPNLS-GLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC-CG-G--GTTCTTCCEEEEECTTCBGGGSCCCT-TCTT
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc-ch-h--hhcCCCCCEEEeECCccCcccChhhc-CCCC
Confidence 5567777777777777633 3 46777777777777776552 22 3 66777777777777766543222222 5677
Q ss_pred CCEEEccCCCCCC-CChhhcCCCCccEEEeecCc-CCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCcc
Q 040238 100 LKYIGLRSCNLTK-FPNFLQNQYHLLVLDLSDNR-IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLL 177 (549)
Q Consensus 100 L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~ 177 (549)
|++|++++|.++. .+..+..+++|++|++++|. ++ .++ .+. .+++|+.|++++|.+..... .... ++|+
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~--~l~~L~~L~l~~n~i~~~~~---l~~l--~~L~ 184 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK--TLPELKSLNIQFDGVHDYRG---IEDF--PKLN 184 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG--GCSSCCEEECTTBCCCCCTT---GGGC--SSCC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc--CCCCCCEEECCCCCCcChHH---hccC--CCCC
Confidence 7777777777743 55667777777777777776 54 344 455 67777777777777776541 1222 2377
Q ss_pred EEEccCCcCCC
Q 040238 178 TFDLSSNNLQG 188 (549)
Q Consensus 178 ~L~L~~n~l~~ 188 (549)
.|++++|.+.+
T Consensus 185 ~L~l~~N~i~~ 195 (197)
T 4ezg_A 185 QLYAFSQTIGG 195 (197)
T ss_dssp EEEECBC----
T ss_pred EEEeeCcccCC
Confidence 77877777653
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=156.14 Aligned_cols=165 Identities=19% Similarity=0.172 Sum_probs=122.9
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
.+++++|.+++.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 23 ~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 23 KQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP----LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCS
T ss_pred HHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh----hccCCCCCEEECCC
Confidence 3567777777543 577888899999998888754 3 67888889999999988885433 67888899999999
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCC
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGF 162 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 162 (549)
|+++.++.... ++|++|++++|.++.++ .+..+++|++|++++|++++. + .+. .+++|+.|++++|.+.+.
T Consensus 95 N~l~~l~~~~~----~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~--~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 95 NRLKNLNGIPS----ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLG--FLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SCCSCCTTCCC----SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGG--GCTTCCEEECTTSCCCBC
T ss_pred CccCCcCcccc----CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHc--cCCCCCEEECCCCcCcch
Confidence 88877655432 78888899888887775 578888888888888888754 3 455 788888888888888776
Q ss_pred CCccccccCCCCCccEEEccCCcCCCC
Q 040238 163 DQHLVVLPANKGDLLTFDLSSNNLQGP 189 (549)
Q Consensus 163 ~~~~~~~~~~~~~L~~L~L~~n~l~~~ 189 (549)
. ..... ++|+.|++++|.+.+.
T Consensus 166 -~--~l~~l--~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -G--GLTRL--KKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -T--TSTTC--CCCCEEEEEEEEEECC
T ss_pred -H--HhccC--CCCCEEeCCCCcccCC
Confidence 1 12222 2377777777766643
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-17 Score=153.26 Aligned_cols=170 Identities=25% Similarity=0.296 Sum_probs=114.0
Q ss_pred CCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcc
Q 040238 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSW 297 (549)
Q Consensus 218 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~ 297 (549)
+..+..++++++.+.+. + .+..+. +|++|++++|.++.. + .+..+++|++|++++|++++..+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~-~L~~L~l~~n~i~~l-----------~-~l~~l~~L~~L~L~~N~i~~~~~-- 80 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELS-GVQNFNGDNSNIQSL-----------A-GMQFFTNLKELHLSHNQISDLSP-- 80 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHT-TCSEEECTTSCCCCC-----------T-TGGGCTTCCEEECCSSCCCCCGG--
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcC-cCcEEECcCCCcccc-----------h-HHhhCCCCCEEECCCCccCCChh--
Confidence 44566677777777633 3 333333 677777777777532 2 34667777777777777775443
Q ss_pred cCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchh
Q 040238 298 LGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPAS 377 (549)
Q Consensus 298 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~ 377 (549)
+..+++|++|++++|.+.+.... .. ++|+.|++++|+ +++. +.
T Consensus 81 l~~l~~L~~L~L~~N~l~~l~~~----~~-~~L~~L~L~~N~------------------------------l~~~--~~ 123 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNLNGI----PS-ACLSRLFLDNNE------------------------------LRDT--DS 123 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCCTTC----CC-SSCCEEECCSSC------------------------------CSBS--GG
T ss_pred hccCCCCCEEECCCCccCCcCcc----cc-CcccEEEccCCc------------------------------cCCC--hh
Confidence 67777777777777776654321 11 555555555554 4432 24
Q ss_pred hcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCccc
Q 040238 378 IANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 378 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
+..+++|++|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 67788888888888888754 3 577888888888888888865 5677888888888888888765
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=142.45 Aligned_cols=112 Identities=26% Similarity=0.288 Sum_probs=89.2
Q ss_pred CCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCC
Q 040238 329 KLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNL 408 (549)
Q Consensus 329 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 408 (549)
+++.|++++|++. .+| ..|..+++| +.|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|
T Consensus 32 ~l~~L~L~~n~i~-~ip-~~~~~l~~L-----~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVP-KELSNYKHL-----TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp TCCEEECCSSCCC-SCC-GGGGGCTTC-----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCEEECCCCcCc-hhH-HHhhcccCC-----CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 3444444444443 333 334555555 666777777777777889999999999999999998888899999999
Q ss_pred CEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 409 ESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 409 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+.|+|++|+++...+..|..+++|+.|++++|+|.|.+.
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 999999999997777789999999999999999998876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-19 Score=183.20 Aligned_cols=84 Identities=32% Similarity=0.451 Sum_probs=49.8
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccC-CcCccCCCCCcEEeccc
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQI-PQQLVELTFLEFFNVSD 439 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 439 (549)
+.|++++|.++ .+|..|+.+++|++|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 44555555554 345556666666666666666663 44 5666666666666666666554 56666666666666666
Q ss_pred CcCcccCC
Q 040238 440 NHLTGLIP 447 (549)
Q Consensus 440 N~l~~~~p 447 (549)
|++++.+|
T Consensus 543 N~l~~~~~ 550 (567)
T 1dce_A 543 NSLCQEEG 550 (567)
T ss_dssp SGGGGSSS
T ss_pred CcCCCCcc
Confidence 66665544
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-17 Score=172.65 Aligned_cols=224 Identities=17% Similarity=0.145 Sum_probs=113.2
Q ss_pred CCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeC
Q 040238 147 QNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVL 226 (549)
Q Consensus 147 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 226 (549)
+.++.|++.+|.+...... . ++.++|+.+.+. .+++..|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~-------~--l~~l~Ls~~~i~-----------~~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA-------L--LQHKKLSQYSID-----------EDDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcchhh-------H--hhcCccCccccc-----------Ccccccccee-cChhhhccCCCCcEEEC
Confidence 4456666666655543222 1 555555555443 2333344444 55777888999999999
Q ss_pred cCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCE
Q 040238 227 SHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNV 306 (549)
Q Consensus 227 s~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 306 (549)
++|.+. .+|..++.+. +|++|+|++|.++ . +|..+..+++|++|+|++|.++ .+|..++.+++|++
T Consensus 232 s~n~l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~----------lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYD-FLTRLYLNGNSLT-E----------LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp TTSCCS-CCCGGGGGCC-SCSCCBCTTSCCS-C----------CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred CCCCCC-CCChhhcCCC-CCCEEEeeCCcCc-c----------cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 999998 7887777655 8999999999997 3 3555688999999999999999 67888999999999
Q ss_pred EEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCE
Q 040238 307 LILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQV 386 (549)
Q Consensus 307 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 386 (549)
|+|++|.+..+ +.. +..+++|+.|++++|++.+.+|.. +...... ...+++++|.+++.+|. .|+.
T Consensus 298 L~L~~N~l~~l-p~~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~----~~~l~l~~N~l~~~~p~------~l~~ 363 (727)
T 4b8c_D 298 FYFFDNMVTTL-PWE--FGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVT----GLIFYLRDNRPEIPLPH------ERRF 363 (727)
T ss_dssp EECCSSCCCCC-CSS--TTSCTTCCCEECTTSCCCSHHHHH-HHHHHHH----HHHHHHHHCCCCCCCCC------C---
T ss_pred EECCCCCCCcc-Chh--hhcCCCccEEeCCCCccCCCChHH-Hhhcchh----hhHHhhccCcccCcCcc------ccce
Confidence 99999998755 333 488999999999999998877754 3322111 13467888888887775 4566
Q ss_pred EEccCC--------ccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 387 LNLQNN--------SLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 387 L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
|++++| .+.+..+..+..+..++...+++|-+.
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------------CCC
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 677776 333333344555666666777777664
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=138.62 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=106.3
Q ss_pred CCCCCCEEEccCCcCC-ccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCc-CCC
Q 040238 21 NLRSLEAIHIAKCNVS-GQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT-TSQ 98 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~~~ 98 (549)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+++. .. +..+++|++|++++|.++... +... .++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~--~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SN--LPKLPKLKKLELSENRIFGGL--DMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SS--CCCCSSCCEEEEESCCCCSCC--CHHHHHCT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hh--hccCCCCCEEECcCCcCchHH--HHHHhhCC
Confidence 3477899999998887 56677788888999999999888854 33 788889999999998777631 1112 478
Q ss_pred CCCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCCC---cccccccCCCCcEEEccCCcCCCCCC
Q 040238 99 KLKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVP---KWLLDPNMQNLNALNISHNFLTGFDQ 164 (549)
Q Consensus 99 ~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~ 164 (549)
+|++|++++|.++.+| ..+..+++|++|++++|.+++..+ ..+. .+++|+.|++++|.+...+.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK--LLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT--TCSSCCEETTEETTSCBCCS
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH--hCccCcEecCCCCChhhccc
Confidence 8999999999888876 578888999999999999885544 3666 78999999999888776554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-18 Score=179.17 Aligned_cols=134 Identities=20% Similarity=0.167 Sum_probs=79.7
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCc-------------CccccCchhhcCCCCCCCeEe-ccCCcc
Q 040238 20 GNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS-------------YRGTIKLDVLLTSWKNLEFLA-LSLNRL 85 (549)
Q Consensus 20 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~~~~~~~~~~~l~~L~~L~-Ls~n~i 85 (549)
..+++|+.|+|++|.+. .+|+.++++++|+.|++++|. ..+..|.. +..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~--l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET--LQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH--HHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH--HHHHHhcccCcchhhccc
Confidence 56788999999999887 568888899999999987765 34444444 67777888887 565533
Q ss_pred ceeeccCCC------cCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 86 SVLTKATSN------TTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 86 ~~~~~~~~~------~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
..+...... .....|+.|++++|.++.+|. +..+++|+.|++++|.++ .+|..+. .+++|+.|+|++|.+
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~--~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALA--ALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGG--GCTTCCEEECCSSCC
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhh--cCCCCCEEECCCCCC
Confidence 222211000 011235555555555555554 555555555555555555 4455554 555555555555544
Q ss_pred C
Q 040238 160 T 160 (549)
Q Consensus 160 ~ 160 (549)
+
T Consensus 499 ~ 499 (567)
T 1dce_A 499 E 499 (567)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-16 Score=137.81 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=115.6
Q ss_pred CCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCc-ccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 246 LSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS-WLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 246 L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
-+.+++++|.++. + |..+. .++++|++++|++++..+. .+..+++|++|++++|.+++..+..+
T Consensus 10 ~~~l~~s~~~l~~-i----------p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-- 74 (192)
T 1w8a_A 10 GTTVDCTGRGLKE-I----------PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-- 74 (192)
T ss_dssp TTEEECTTSCCSS-C----------CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--
T ss_pred CCEEEcCCCCcCc-C----------ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc--
Confidence 4789999999953 3 33222 3899999999999977664 48899999999999999988766555
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
.++++|++|++++|++ ++..+..|.++++|++|++++|++++..|..|..
T Consensus 75 ~~l~~L~~L~Ls~N~l------------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (192)
T 1w8a_A 75 EGASHIQELQLGENKI------------------------------KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp TTCTTCCEEECCSCCC------------------------------CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred CCcccCCEEECCCCcC------------------------------CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence 6677777666666655 3455666888899999999999999888889999
Q ss_pred CCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 405 LPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
+++|+.|++++|++.+..+... -...++...+.++...|..|.
T Consensus 125 l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 125 LNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred CCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCCh
Confidence 9999999999999986544210 001133334455556666553
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.2e-17 Score=172.51 Aligned_cols=126 Identities=21% Similarity=0.141 Sum_probs=54.6
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCcc---------ccCchhhcCCCCCCCeEeccCCccceeeccCC
Q 040238 23 RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRG---------TIKLDVLLTSWKNLEFLALSLNRLSVLTKATS 93 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~---------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 93 (549)
++++.|+|.+|.+... +.. .|+.++|+.+.+.+ ..+.. +..+++|+.|+|++|.+..++...+
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDS--KYDDQLWHALDLSNLQIFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhh--hccCCCCcEEECCCCCCCCCChhhc
Confidence 5577777777766642 222 23333333333321 22222 5666667777777666665544322
Q ss_pred CcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 94 NTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 94 ~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
.+++|++|+|++|.++.+|..+..+++|++|+|++|.++ .+|..+. .+++|++|+|++|.+..
T Consensus 245 --~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~--~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 245 --KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELG--SCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp --GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGG--GGTTCSEEECCSSCCCC
T ss_pred --CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhc--CCCCCCEEECCCCCCCc
Confidence 456666666666666666666666666666666666666 5566665 66666666666665543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-16 Score=151.38 Aligned_cols=222 Identities=15% Similarity=0.072 Sum_probs=141.6
Q ss_pred CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCcc----CCcCCCcccccCC
Q 040238 194 PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----FGTIPNTFIKERR 269 (549)
Q Consensus 194 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l----~~~~~~~~~~~~~ 269 (549)
+++|+.+++.. .+....+.+|.+|++|+.+++++|.+....+.++.. ..++..+....+.. .....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~-------- 169 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEH-------- 169 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTT--------
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcC-CCceEEecCcchhhhhccccccc--------
Confidence 56667777766 666666677888888888888888777444444443 32455555544221 11111
Q ss_pred CCccccCCCCCc-EEEccCCcC-CCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChh
Q 040238 270 IPRSLINCSKLE-FLGLGNNQI-SDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLK 347 (549)
Q Consensus 270 l~~~l~~~~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 347 (549)
..+..+..|+ .+++....- ............+++.+.+.++-...... .....+++|+.+++++|++. .+|..
T Consensus 170 --~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~--~l~~~~~~L~~l~L~~n~i~-~I~~~ 244 (329)
T 3sb4_A 170 --FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFK--LIRDYMPNLVSLDISKTNAT-TIPDF 244 (329)
T ss_dssp --SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHH--HHHHHCTTCCEEECTTBCCC-EECTT
T ss_pred --cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHH--HHHHhcCCCeEEECCCCCcc-eecHh
Confidence 1234555666 444443211 00000111123455666665442111100 00023678888888887754 67777
Q ss_pred hhhccccccccccceEEccCCcCcccCchhhcCCCCCC-EEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCc
Q 040238 348 SFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQ-VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQL 426 (549)
Q Consensus 348 ~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 426 (549)
+|.++.+| +.+++.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.|++++|+++...+..|
T Consensus 245 aF~~~~~L-----~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 245 TFAQKKYL-----LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp TTTTCTTC-----CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred hhhCCCCC-----CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 88888777 78888877 7777788899999999 999998 7776777899999999999999999997888899
Q ss_pred cCCCCCcEEec
Q 040238 427 VELTFLEFFNV 437 (549)
Q Consensus 427 ~~l~~L~~L~l 437 (549)
.++++|+.++.
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 99999998863
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-16 Score=132.86 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=92.3
Q ss_pred CCCCCEEEccCCcCC-ccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCcccee-eccCCCcCCCC
Q 040238 22 LRSLEAIHIAKCNVS-GQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVL-TKATSNTTSQK 99 (549)
Q Consensus 22 l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~~~ 99 (549)
.++|++|++++|.+. +..|..+..+++|++|++++|.+++. . .+..+++|++|++++|.++.. +.. ...+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A--NLPKLNKLKKLELSDNRVSGGLEVL--AEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T--TCCCCTTCCEEECCSSCCCSCTHHH--HHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h--hhhcCCCCCEEECCCCcccchHHHH--hhhCCC
Confidence 367888888888877 56667777888888888888887754 3 377788888888888876653 221 114678
Q ss_pred CCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCCC---cccccccCCCCcEEEcc
Q 040238 100 LKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVP---KWLLDPNMQNLNALNIS 155 (549)
Q Consensus 100 L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~L~ 155 (549)
|++|++++|.++.++ ..+..+++|++|++++|.+++..+ ..+. .+++|+.|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFK--LLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHH--HCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHH--HCCCcccccCC
Confidence 888888888887765 677888888888888888875544 3566 78888888875
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=130.88 Aligned_cols=134 Identities=20% Similarity=0.201 Sum_probs=97.7
Q ss_pred CcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccc
Q 040238 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVN 359 (549)
Q Consensus 280 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~ 359 (549)
.+.+++++++++. +|..+ .++|++|++++|.+.+..+..+ ..+++|++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~--------------------------- 56 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVF--DKLTQLTK--------------------------- 56 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCSE---------------------------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHh--cCcccccE---------------------------
Confidence 4567777777663 33222 2466666666666655433322 34444544
Q ss_pred cceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 360 TTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 360 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 57 ---L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 57 ---LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp ---EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ---EECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 45555555555666788899999999999999977777889999999999999999977666778899999999999
Q ss_pred CcCcccCCC
Q 040238 440 NHLTGLIPP 448 (549)
Q Consensus 440 N~l~~~~p~ 448 (549)
|++.|.+|.
T Consensus 134 N~~~~~~~~ 142 (177)
T 2o6r_A 134 NPWDCSCPR 142 (177)
T ss_dssp SCBCCCHHH
T ss_pred CCeeccCcc
Confidence 999988763
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=145.92 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=78.4
Q ss_pred ccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCC-EeeCCCCcccccCCcCccCCCCCcEEec
Q 040238 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLE-SLDLSNNKFSGQIPQQLVELTFLEFFNV 437 (549)
Q Consensus 359 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l 437 (549)
+++.+++++|+++.+.+.+|.++++|+++++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+..|.++++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 3499999999999998999999999999999998 7767778999999999 999999 788778899999999999999
Q ss_pred ccCcCcccCC
Q 040238 438 SDNHLTGLIP 447 (549)
Q Consensus 438 ~~N~l~~~~p 447 (549)
++|.++...+
T Consensus 305 ~~n~i~~I~~ 314 (329)
T 3sb4_A 305 TGDKITTLGD 314 (329)
T ss_dssp CSSCCCEECT
T ss_pred CCCccCccch
Confidence 9999885543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=129.87 Aligned_cols=135 Identities=22% Similarity=0.190 Sum_probs=85.5
Q ss_pred CCCCcEEEccCCcCC-CCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc
Q 040238 277 CSKLEFLGLGNNQIS-DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355 (549)
Q Consensus 277 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 355 (549)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. . .+..+++|++|++++|++.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~N~l~-------------- 84 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S--NLPKLPKLKKLELSENRIF-------------- 84 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S--SCCCCSSCCEEEEESCCCC--------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h--hhccCCCCCEEECcCCcCc--------------
Confidence 356667777777665 45555566666777777777766554 1 2244555555555555543
Q ss_pred cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCC-CcccCCCCCCCEeeCCCCcccccCC---cCccCCCC
Q 040238 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHI-PSCLGNLPNLESLDLSNNKFSGQIP---QQLVELTF 431 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~ 431 (549)
+.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++
T Consensus 85 ----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 85 ----------------GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp ----------------SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred ----------------hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 334455566777777777777777432 2567777777777777777774444 36777777
Q ss_pred CcEEecccCcCccc
Q 040238 432 LEFFNVSDNHLTGL 445 (549)
Q Consensus 432 L~~L~l~~N~l~~~ 445 (549)
|++|++++|.+...
T Consensus 149 L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 149 LTYLDGYDREDQEA 162 (168)
T ss_dssp CCEETTEETTSCBC
T ss_pred CcEecCCCCChhhc
Confidence 77777777776643
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-15 Score=126.49 Aligned_cols=129 Identities=22% Similarity=0.208 Sum_probs=90.6
Q ss_pred CCCCcEEEccCCcCC-CCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc
Q 040238 277 CSKLEFLGLGNNQIS-DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355 (549)
Q Consensus 277 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 355 (549)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. . .+..+++|++|++++|.+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~n~i~-------------- 77 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A--NLPKLNKLKKLELSDNRVS-------------- 77 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T--TCCCCTTCCEEECCSSCCC--------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h--hhhcCCCCCEEECCCCccc--------------
Confidence 467889999999887 66777778888888888888888765 2 2356677777777666654
Q ss_pred cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccC-CCcccCCCCCCCEeeCCCCcccccCC---cCccCCCC
Q 040238 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGH-IPSCLGNLPNLESLDLSNNKFSGQIP---QQLVELTF 431 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~ 431 (549)
+.+|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|++++..+ ..+..+++
T Consensus 78 ----------------~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 78 ----------------GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp ----------------SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred ----------------chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 33455556667777777777777642 23567777777777777777775544 45667777
Q ss_pred CcEEeccc
Q 040238 432 LEFFNVSD 439 (549)
Q Consensus 432 L~~L~l~~ 439 (549)
|+.|++++
T Consensus 142 L~~L~l~d 149 (149)
T 2je0_A 142 LTYLDGYD 149 (149)
T ss_dssp CCEETTBC
T ss_pred cccccCCC
Confidence 77777653
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=137.28 Aligned_cols=210 Identities=10% Similarity=0.052 Sum_probs=141.5
Q ss_pred CCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccC
Q 040238 208 TGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGN 287 (549)
Q Consensus 208 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 287 (549)
......+|.+|++|+.+++++|.+. .++...+.. .+|+.+.+..+ ++...... |.+|++|+.+++..
T Consensus 169 ~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~-~~L~~l~lp~~-l~~I~~~a----------F~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 169 EQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVY-AGIEEVLLPVT-LKEIGSQA----------FLKTSQLKTIEIPE 235 (401)
T ss_dssp CEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTT-CCCSEEECCTT-CCEECTTT----------TTTCTTCCCEECCT
T ss_pred cEehHHHhhCcccCCeeecCCCcce-EechhhEee-cccCEEEeCCc-hheehhhH----------hhCCCCCCEEecCC
Confidence 3344567788888888888888887 455444444 37888888744 44333333 46788888888887
Q ss_pred CcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccc----cccChhhhhccccccccccceE
Q 040238 288 NQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFI----GTLPLKSFLCWNAMKIVNTTGI 363 (549)
Q Consensus 288 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~----~~~~~~~~~~l~~l~~~~l~~L 363 (549)
+ ++.....+|.+ .+|+.+.+. +.+..+....+ .++++|+.+++.+|.+. ..++..+|.++.+| +.+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF--~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L-----~~l 305 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAF--YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL-----ARF 305 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTT--TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC-----CEE
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHh--hCCCCCCEEEeCCccccCCcccEECHHHhhCCccC-----CeE
Confidence 5 45455666766 678888884 44555544444 77888888888776643 23666677777776 666
Q ss_pred EccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCC-CCcEEecccCcC
Q 040238 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT-FLEFFNVSDNHL 442 (549)
Q Consensus 364 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l 442 (549)
++. +.++.+...+|.++++|+.++|..+ ++.....+|.++ +|+.+++++|.+....+..|.+++ .++.|.+..+.+
T Consensus 306 ~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 306 EIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 666 3466666677777778888877554 554556677777 788888877777766666677764 667777776654
Q ss_pred c
Q 040238 443 T 443 (549)
Q Consensus 443 ~ 443 (549)
.
T Consensus 383 ~ 383 (401)
T 4fdw_A 383 E 383 (401)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-13 Score=134.75 Aligned_cols=174 Identities=17% Similarity=0.184 Sum_probs=81.1
Q ss_pred hhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCC
Q 040238 213 SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292 (549)
Q Consensus 213 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~ 292 (549)
..|.++..|+.+.+..+... +....+... +|+.+.+... .+.... ..+..+..++.+.+..+...
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~-~l~~i~ip~~-~~~i~~----------~~f~~~~~l~~~~~~~~~~~- 266 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYY--LGDFALSKT-GVKNIIIPDS-FTELGK----------SVFYGCTDLESISIQNNKLR- 266 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCE--ECTTTTTTC-CCCEEEECTT-CCEECS----------STTTTCSSCCEEEECCTTCE-
T ss_pred hhhccccccceeecCCCceE--eehhhcccC-CCceEEECCC-ceeccc----------ccccccccceeEEcCCCcce-
Confidence 44556666666666554322 112222222 4666655432 111111 12355666777766665433
Q ss_pred CcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcc
Q 040238 293 TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS 372 (549)
Q Consensus 293 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~ 372 (549)
.....|..+..++.+....+.+. ...+..+.+|+.+.+.++ ...++..+|.++.+| +.+++.. .++.
T Consensus 267 i~~~~F~~~~~l~~~~~~~~~i~-----~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L-----~~i~lp~-~v~~ 333 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSVIVP-----EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSL-----VSIDLPY-LVEE 333 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSSEEC-----TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTC-----CEECCCT-TCCE
T ss_pred eeccccccccccceeccCceeec-----cccccccccccccccccc--cceechhhhcCCCCC-----CEEEeCC-cccE
Confidence 44455666666666666554321 112355666666666543 123444444444444 3444432 2333
Q ss_pred cCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCC
Q 040238 373 VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415 (549)
Q Consensus 373 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 415 (549)
+...+|.++++|+.+++..+ ++.....+|.++++|+.+++..
T Consensus 334 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 334 IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 33444555555555555444 3333334455555555555543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=127.59 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=111.8
Q ss_pred ccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcC
Q 040238 17 GSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTT 96 (549)
Q Consensus 17 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 96 (549)
..+.++++|++|++++|.+... +......++|++|++++|.+++. .. +..+++|++|++++|.++.++...+ ..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~--l~~l~~L~~L~Ls~N~l~~~~~~~~-~~ 86 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DG--FPLLRRLKTLLVNNNRICRIGEGLD-QA 86 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CC--CCCCSSCCEEECCSSCCCEECSCHH-HH
T ss_pred HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cc--cccCCCCCEEECCCCcccccCcchh-hc
Confidence 4577889999999999999865 44333345999999999999864 34 8999999999999999887754321 26
Q ss_pred CCCCCEEEccCCCCCCCCh--hhcCCCCccEEEeecCcCCCCCCcc----cccccCCCCcEEEccCCcCCC
Q 040238 97 SQKLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVPKW----LLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 97 ~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~~~~----~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+++|++|++++|.++.+|. .+..+++|++|++++|+++ ..|.. +. .+++|+.|++++|....
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~--~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIY--KVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHH--HCTTCSEETTEECCHHH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHH--HCCccceeCCCcCCHHH
Confidence 8899999999999999987 7889999999999999997 45553 66 89999999999987643
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=125.58 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=72.9
Q ss_pred cccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChh-hcCC
Q 040238 42 SLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNF-LQNQ 120 (549)
Q Consensus 42 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l 120 (549)
.+.++++|++|++++|.++. ++. +....++|++|++++|.++.+. ....+++|++|++++|.++.+|.. +..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~--~~~~~~~L~~L~Ls~N~l~~~~---~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN--LGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC--GGGGTTCCSEEECCSSCCCEEC---CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred hcCCcCCceEEEeeCCCCch-hHH--hhhcCCCCCEEECCCCCCCccc---ccccCCCCCEEECCCCcccccCcchhhcC
Confidence 34556666666666666662 221 1222336666666666666551 122456666666666666666543 3566
Q ss_pred CCccEEEeecCcCCCCCCc--ccccccCCCCcEEEccCCcCCCCCCcc--ccccCCCCCccEEEccCCcCC
Q 040238 121 YHLLVLDLSDNRIQGKVPK--WLLDPNMQNLNALNISHNFLTGFDQHL--VVLPANKGDLLTFDLSSNNLQ 187 (549)
Q Consensus 121 ~~L~~L~l~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~~~~~~L~~L~L~~n~l~ 187 (549)
++|++|++++|.++ .+|. .+. .+++|+.|++++|.+...+... ..... ++|+.||++.|...
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~--~l~~L~~L~l~~N~i~~~~~~~~~~~~~l--~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLA--SLKSLTYLCILRNPVTNKKHYRLYVIYKV--PQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGG--GCTTCCEEECCSSGGGGSTTHHHHHHHHC--TTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-cchhhHhhh--cCCCCCEEEecCCCCCCcHhHHHHHHHHC--CccceeCCCcCCHH
Confidence 66666666666664 3443 444 5666666666666665443320 01112 22666666666543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-12 Score=129.32 Aligned_cols=265 Identities=13% Similarity=0.121 Sum_probs=159.1
Q ss_pred CCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCC
Q 040238 22 LRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLK 101 (549)
Q Consensus 22 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 101 (549)
+..++.+.+.++ +..+...+|.++ +|+.+.+..+ ++ .++.. .|.++ +|+.+.+.. .+..++...+. .|.+|+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~-aF~~~-~L~~i~lp~-~l~~I~~~aF~-~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDM-AFFNS-TVQEIVFPS-TLEQLKEDIFY-YCYNLK 183 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTT-TTTTC-CCCEEECCT-TCCEECSSTTT-TCTTCC
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHH-hcCCC-CceEEEeCC-CccEehHHHhh-CcccCC
Confidence 466777777653 555566677775 6777777665 55 33322 35554 577777775 56666665554 577788
Q ss_pred EEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEc
Q 040238 102 YIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDL 181 (549)
Q Consensus 102 ~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L 181 (549)
.+++.+|.++.++.......+|+.+.+..+ +.......|. ++++|+.+++..+ +..+....+.. .+|+.+.+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~--~~~~L~~l~l~~~-l~~I~~~aF~~----~~L~~i~l 255 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFL--KTSQLKTIEIPEN-VSTIGQEAFRE----SGITTVKL 255 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTT--TCTTCCCEECCTT-CCEECTTTTTT----CCCSEEEE
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhh--CCCCCCEEecCCC-ccCcccccccc----CCccEEEe
Confidence 888877777777764444677777777644 5545556666 7777887777653 44444332222 12555555
Q ss_pred cCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCC----CcCCcchhcCCCCCCeeecCCCccC
Q 040238 182 SSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS----GLLPQCLGNSSDELSVLDLQGNNFF 257 (549)
Q Consensus 182 ~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~~~~~~~~L~~L~L~~n~l~ 257 (549)
.. .+......+|.++++|+.+++.++.+. ..++...+...++|+.+++.+ .++
T Consensus 256 p~----------------------~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 256 PN----------------------GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp ET----------------------TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred CC----------------------CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 32 223344566777888888888776553 123333344444677777763 344
Q ss_pred CcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCC-CCceeeCC
Q 040238 258 GTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFS-KLRIIDLS 336 (549)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~ls 336 (549)
...... |.+|++|+.+++..+ ++.....+|.++ +|+.+++.+|.+..+....+ .+++ +++.+.+.
T Consensus 313 ~I~~~a----------F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F--~~~~~~l~~l~vp 378 (401)
T 4fdw_A 313 ILGQGL----------LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW--YGFPDDITVIRVP 378 (401)
T ss_dssp EECTTT----------TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC--CCSCTTCCEEEEC
T ss_pred EEhhhh----------hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc--cCCCCCccEEEeC
Confidence 333333 366777777777554 554556677777 77777777776665544433 4443 56666665
Q ss_pred CCc
Q 040238 337 NNI 339 (549)
Q Consensus 337 ~n~ 339 (549)
.+.
T Consensus 379 ~~~ 381 (401)
T 4fdw_A 379 AES 381 (401)
T ss_dssp GGG
T ss_pred HHH
Confidence 544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=120.75 Aligned_cols=110 Identities=23% Similarity=0.254 Sum_probs=55.4
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
+|++|++++|.++ .+|..+..+. +|++|++++|.+++..+.. |..+++|++|++++|++++..+..|.
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~----------f~~l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQS----------FSNMTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTT----------TTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhH----------ccCCCCCCEEECCCCccCEeCHHHhC
Confidence 3444444444444 3333333322 4555555555444333222 24455555555555555555555555
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGT 343 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 343 (549)
.+++|++|+|++|.+..+.+..+ ..+++|+.|++++|++...
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECS
T ss_pred CCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecC
Confidence 55566666666665555443333 4556666666666665443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=122.24 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=80.4
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 77777788888888888999999999999999999877788899999999999999999877778999999999999999
Q ss_pred cCcccCCCC
Q 040238 441 HLTGLIPPG 449 (549)
Q Consensus 441 ~l~~~~p~~ 449 (549)
+++|.++..
T Consensus 113 ~~~c~c~~l 121 (170)
T 3g39_A 113 PWDCACSDI 121 (170)
T ss_dssp CBCTTBGGG
T ss_pred CCCCCchhH
Confidence 999988743
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-13 Score=118.02 Aligned_cols=114 Identities=21% Similarity=0.190 Sum_probs=60.8
Q ss_pred CCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCccc
Q 040238 219 NILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWL 298 (549)
Q Consensus 219 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 298 (549)
++|++|++++|.+.+..+..+.. .++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDK-LTQLTKLSLSQNQIQSLPDGV----------FDKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCcEEEeCCCcccEeCHHHhcC-cccccEEECCCCcceEeChhH----------ccCCCccCEEECCCCCccccCHHHh
Confidence 34455555555554322222222 224555555555554332222 2455666666666666665555555
Q ss_pred CCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccC
Q 040238 299 GTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP 345 (549)
Q Consensus 299 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 345 (549)
..+++|++|++++|.+.++.+..+ ..+++|+.|++++|++.+..+
T Consensus 97 ~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred hCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 666666666666666665544333 556666777777776665444
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-12 Score=128.92 Aligned_cols=199 Identities=11% Similarity=0.113 Sum_probs=145.5
Q ss_pred chhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCC
Q 040238 212 PSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS 291 (549)
Q Consensus 212 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 291 (549)
...|.++++|+.+.+..+ +. .++...+.....|+.+.+..+... +......+.+|+.+.+.... +
T Consensus 178 ~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~------------i~~~~~~~~~l~~i~ip~~~-~ 242 (394)
T 4fs7_A 178 NGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY------------LGDFALSKTGVKNIIIPDSF-T 242 (394)
T ss_dssp TTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE------------ECTTTTTTCCCCEEEECTTC-C
T ss_pred cccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE------------eehhhcccCCCceEEECCCc-e
Confidence 356778888999988776 44 333333343447888877665332 11122446789999887643 3
Q ss_pred CCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCc
Q 040238 292 DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD 371 (549)
Q Consensus 292 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~ 371 (549)
......|.++..|+.+.+..+.. .+.... +..+..++.+...... ++..+|..+.++ +.+.+..+ ++
T Consensus 243 ~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~--F~~~~~l~~~~~~~~~----i~~~~F~~~~~L-----~~i~l~~~-i~ 309 (394)
T 4fs7_A 243 ELGKSVFYGCTDLESISIQNNKL-RIGGSL--FYNCSGLKKVIYGSVI----VPEKTFYGCSSL-----TEVKLLDS-VK 309 (394)
T ss_dssp EECSSTTTTCSSCCEEEECCTTC-EECSCT--TTTCTTCCEEEECSSE----ECTTTTTTCTTC-----CEEEECTT-CC
T ss_pred ecccccccccccceeEEcCCCcc-eeeccc--cccccccceeccCcee----eccccccccccc-----cccccccc-cc
Confidence 35556788899999999987643 333333 4788889988887653 566778888888 77777654 77
Q ss_pred ccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 372 SVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 372 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ ++.....+|.++.+|+.+++..+
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 677789999999999999865 66566789999999999999887 77677789999999999999765
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=119.35 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=78.1
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 67777777777788888999999999999999999777777899999999999999999776667999999999999999
Q ss_pred cCcccCCC
Q 040238 441 HLTGLIPP 448 (549)
Q Consensus 441 ~l~~~~p~ 448 (549)
+|.+.++.
T Consensus 116 ~~~c~~~~ 123 (174)
T 2r9u_A 116 PWDCECRD 123 (174)
T ss_dssp CBCTTBGG
T ss_pred Cccccccc
Confidence 99988763
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.8e-16 Score=138.73 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=90.7
Q ss_pred EEECCCCCCCCcccc------cccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCC
Q 040238 3 FLYLRLNNFSGDLLG------SIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLE 76 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~ 76 (549)
.++++++.+++..|. .|..+++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|.. +..+++|+
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~--~~~~~~L~ 96 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL--DAVADTLE 96 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH--HHHHHHCS
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch--hhcCCcCC
Confidence 345555555555444 67777777777777777765 34 6677777777777777776 44443 55567777
Q ss_pred eEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh--hhcCCCCccEEEeecCcCCCCCCc----------ccccc
Q 040238 77 FLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVPK----------WLLDP 144 (549)
Q Consensus 77 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~~~----------~~~~~ 144 (549)
+|++++|.++.++. ...+++|++|++++|.++.++. .+..+++|++|++++|++++..|. .+.
T Consensus 97 ~L~L~~N~l~~l~~---~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~-- 171 (198)
T 1ds9_A 97 ELWISYNQIASLSG---IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK-- 171 (198)
T ss_dssp EEEEEEEECCCHHH---HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH--
T ss_pred EEECcCCcCCcCCc---cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH--
Confidence 77777776666542 1256677777777777766654 566777777777777776544333 144
Q ss_pred cCCCCcEEE
Q 040238 145 NMQNLNALN 153 (549)
Q Consensus 145 ~l~~L~~L~ 153 (549)
.+++|+.|+
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 567777665
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-15 Score=135.50 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=95.9
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
.++.++++.+.+++..|.. ..+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+..
T Consensus 19 ~l~~l~l~~~~l~~~~~~l----~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-------- 84 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPI----EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-------- 84 (198)
T ss_dssp CCCCTTCSEEECCBCCTTC----CCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS--------
T ss_pred cccCcchheeEeccccCcH----hhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc--------
Confidence 5666666666666554431 2334445556666666666666654 33 45555556666665555542
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCC-cccC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIP-SCLG 403 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 403 (549)
+|. .+..++++ +.|++++|.+++. | .+..+++|++|++++|++.+..+ ..+.
T Consensus 85 -------------------l~~-~~~~~~~L-----~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~ 137 (198)
T 1ds9_A 85 -------------------IEN-LDAVADTL-----EELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLA 137 (198)
T ss_dssp -------------------CSS-HHHHHHHC-----SEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHT
T ss_pred -------------------ccc-hhhcCCcC-----CEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHh
Confidence 221 23333344 6666666666652 3 46777888888888888874322 4677
Q ss_pred CCCCCCEeeCCCCcccccCCcC----------ccCCCCCcEEecccCcCc
Q 040238 404 NLPNLESLDLSNNKFSGQIPQQ----------LVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 404 ~l~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~N~l~ 443 (549)
.+++|+.|++++|++.+..|.. +..+++|+.|| +|+++
T Consensus 138 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 138 ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888888887665543 67788888876 66665
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=111.92 Aligned_cols=102 Identities=13% Similarity=0.135 Sum_probs=49.9
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
.+++++|.++ .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|++++. +.. .|..+++|++|++++
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~-~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTG-VFDKLTQLTQLDLND 90 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTT-TTTTCTTCCEEECCS
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-Chh-HhCCcchhhEEECCC
Confidence 4555555554 3343332 5555566665555555555555555555555555555532 222 245555555555555
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCC
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNL 110 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l 110 (549)
|.|+.++...+. .+++|++|++++|.+
T Consensus 91 N~l~~l~~~~~~-~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLKSIPRGAFD-NLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCCCCCTTTTT-TCTTCSEEECCSSCB
T ss_pred CccceeCHHHhc-cccCCCEEEeCCCCc
Confidence 544443332111 234444444444444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-12 Score=109.98 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=45.6
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+++++++|.++. +|..+. ++|++|+|++|.+.+..|..|.++++|++|++++|++++..+.. |..+++|++|+++
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV--FDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh--ccCCCCCCEEECC
Confidence 456666666653 343332 55666666666666555566666666666666666665333322 4555555555555
Q ss_pred CCccceee
Q 040238 82 LNRLSVLT 89 (549)
Q Consensus 82 ~n~i~~~~ 89 (549)
+|+++.++
T Consensus 87 ~N~l~~~~ 94 (170)
T 3g39_A 87 DNQLKSIP 94 (170)
T ss_dssp SSCCCCCC
T ss_pred CCccCEeC
Confidence 55444433
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-10 Score=112.21 Aligned_cols=332 Identities=10% Similarity=0.102 Sum_probs=150.4
Q ss_pred cccccccCCC-CCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCc---cceeeccCCCcCCCCCCEEEccCCCCCCC
Q 040238 38 QITSSLRNLS-QLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNR---LSVLTKATSNTTSQKLKYIGLRSCNLTKF 113 (549)
Q Consensus 38 ~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~~~~~L~~L~l~~n~l~~l 113 (549)
+...+|.++. .|+.+.+..+ ++..-.. .|.++.+|+.+.+..|. ++.++...+. .+.+|+.+.+..+ ++.+
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~--AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~-~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSN--AFYNCTSLKRVTIQDNKPSCVKKIGRQAFM-FCSELTDIPILDS-VTEI 128 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTT--TTTTCTTCCEEEEGGGCCCCCCEECTTTTT-TCTTCCBCGGGTT-CSEE
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHH--HhhCCccCceEeecCCCCCeeeEechhhch-hcccceeeccCCc-ccee
Confidence 3345565553 4666666543 4422222 36666666666666542 4455554443 4556665555443 3333
Q ss_pred Ch-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCC
Q 040238 114 PN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192 (549)
Q Consensus 114 ~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 192 (549)
+. .+..+.+|+.+.+..+- .......|. .+..|+.+.+..+ +..+....+. . ..|+.+.+..+...
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~--~c~~L~~i~~~~~-~~~I~~~aF~--~--~~l~~i~ip~~~~~----- 195 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGV-TSVADGMFS--YCYSLHTVTLPDS-VTAIEERAFT--G--TALTQIHIPAKVTR----- 195 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CEECTTTTT--TCTTCCEEECCTT-CCEECTTTTT--T--CCCSEEEECTTCCE-----
T ss_pred hhhhhhhhccccccccccee-eeeccccee--cccccccccccce-eeEecccccc--c--cceeEEEECCcccc-----
Confidence 32 45566666666665432 223334444 6666777666543 3333322221 1 12555554332111
Q ss_pred CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCc
Q 040238 193 PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPR 272 (549)
Q Consensus 193 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 272 (549)
....+|..+..++.......... .....+.............
T Consensus 196 -----------------i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------- 237 (394)
T 4gt6_A 196 -----------------IGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIR-------------------- 237 (394)
T ss_dssp -----------------ECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEE--------------------
T ss_pred -----------------cccchhhhccccceecccccccc-cccceeecccccccccccc--------------------
Confidence 22234555556665555443322 1111111111000000000
Q ss_pred cccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcc
Q 040238 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW 352 (549)
Q Consensus 273 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l 352 (549)
......+..+.+... ++.....+|.++.+|+.+.+.++.. .+... .+.++++|+.+++..+ ...++..+|.++
T Consensus 238 -~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~--aF~~c~~L~~i~l~~~--i~~I~~~aF~~c 310 (394)
T 4gt6_A 238 -YPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTG--AFMNCPALQDIEFSSR--ITELPESVFAGC 310 (394)
T ss_dssp -CCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTT--TTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred -cccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCc--ccccccccccccCCCc--ccccCceeecCC
Confidence 001112222222211 1112233444444555554433221 12111 2244455555555322 123444555555
Q ss_pred ccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCC
Q 040238 353 NAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFL 432 (549)
Q Consensus 353 ~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 432 (549)
.+| +.+++.. .++.+...+|.++.+|+++.+..+ ++..-..+|.++++|+.+++.++.... ..+....+|
T Consensus 311 ~~L-----~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L 380 (394)
T 4gt6_A 311 ISL-----KSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGL 380 (394)
T ss_dssp TTC-----CEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC
T ss_pred CCc-----CEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCC
Confidence 555 4555543 244455567888888888888654 554556778888888888888775431 356667777
Q ss_pred cEEecccCcC
Q 040238 433 EFFNVSDNHL 442 (549)
Q Consensus 433 ~~L~l~~N~l 442 (549)
+.+.+..|.+
T Consensus 381 ~~i~i~~~~~ 390 (394)
T 4gt6_A 381 QNLPVAPGSI 390 (394)
T ss_dssp ----------
T ss_pred CEEEeCCCCE
Confidence 7777766543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-09 Score=109.23 Aligned_cols=335 Identities=12% Similarity=0.146 Sum_probs=190.5
Q ss_pred CCCcccccccCCC-CCCEEEccCCcCCccccccccCCCCCCEEeCCCCc---CccccCchhhcCCCCCCCeEeccCCccc
Q 040238 11 FSGDLLGSIGNLR-SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS---YRGTIKLDVLLTSWKNLEFLALSLNRLS 86 (549)
Q Consensus 11 l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~~~l~~L~~L~Ls~n~i~ 86 (549)
++.+-..+|.+++ .|+.+.+..+ +..+...+|.++.+|+.+.+..|. ++ .+... .|..+.+|+.+.+..+ ++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~-aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQ-AFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTT-TTTTCTTCCBCGGGTT-CS
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-Eechh-hchhcccceeeccCCc-cc
Confidence 3444456788885 5999999865 777778999999999999987653 44 33333 4889999999888765 56
Q ss_pred eeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCc
Q 040238 87 VLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQH 165 (549)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 165 (549)
.++...+. .+.+|+.+.+..+ +..++. .+..+..|+.+.+..+ ++......|. ..+|+.+.+..+- ..+...
T Consensus 127 ~I~~~aF~-~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~---~~~l~~i~ip~~~-~~i~~~ 199 (394)
T 4gt6_A 127 EIDSEAFH-HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT---GTALTQIHIPAKV-TRIGTN 199 (394)
T ss_dssp EECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT---TCCCSEEEECTTC-CEECTT
T ss_pred eehhhhhh-hhcccccccccce-eeeecccceecccccccccccce-eeEecccccc---ccceeEEEECCcc-cccccc
Confidence 66666554 6889999999754 444543 6778889999988765 3334444553 4678888886542 222222
Q ss_pred cccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhh-hcCCCCCeEeCcCCcCCCcCCcchhcCCC
Q 040238 166 LVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWI-CNLNILESLVLSHNNLSGLLPQCLGNSSD 244 (549)
Q Consensus 166 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 244 (549)
. +..+.. ++............ ...+ ........-.... + . ..
T Consensus 200 a-f~~c~~--l~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~-------~----~-~~ 242 (394)
T 4gt6_A 200 A-FSECFA--LSTITSDSESYPAI----------------------DNVLYEKSANGDYALIRY-------P----S-QR 242 (394)
T ss_dssp T-TTTCTT--CCEEEECCSSSCBS----------------------SSCEEEECTTSCEEEEEC-------C----T-TC
T ss_pred h-hhhccc--cceecccccccccc----------------------cceeeccccccccccccc-------c----c-cc
Confidence 1 112222 55544443322100 0000 0000000000000 0 0 00
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
.+..+.+.. .++... ..+|..|..|+.+.+.++... ....+|.++++|+.+.+. +.+..+....+
T Consensus 243 ~~~~~~ip~-~v~~i~----------~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF-- 307 (394)
T 4gt6_A 243 EDPAFKIPN-GVARIE----------THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVF-- 307 (394)
T ss_dssp CCSEEECCT-TEEEEC----------TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTT--
T ss_pred ccceEEcCC-cceEcc----------cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceee--
Confidence 122222211 111111 112356667777776654332 444566677777777774 33444433333
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
.++.+|+.+++..+ ...+...+|.++.+| +.+.+..+ ++.+...+|.++++|+.+++.++.... .++..
T Consensus 308 ~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L-----~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~ 376 (394)
T 4gt6_A 308 AGCISLKSIDIPEG--ITQILDDAFAGCEQL-----ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAIST 376 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTC-----CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBC
T ss_pred cCCCCcCEEEeCCc--ccEehHhHhhCCCCC-----CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhc
Confidence 66777777777654 235666777777777 67777543 666667889999999999999886542 56778
Q ss_pred CCCCCEeeCCCCccc
Q 040238 405 LPNLESLDLSNNKFS 419 (549)
Q Consensus 405 l~~L~~L~l~~n~l~ 419 (549)
...|+.+.+..+.+.
T Consensus 377 ~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 377 DSGLQNLPVAPGSID 391 (394)
T ss_dssp CCCC-----------
T ss_pred cCCCCEEEeCCCCEE
Confidence 889999988877553
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.9e-14 Score=136.36 Aligned_cols=133 Identities=19% Similarity=0.135 Sum_probs=55.4
Q ss_pred cEEECCCCCCCCccccccc-----CCCCCCEEEccCCcCCccccccc-cCCCCCCEEeCCCCcCccccCch--hhc-CCC
Q 040238 2 QFLYLRLNNFSGDLLGSIG-----NLRSLEAIHIAKCNVSGQITSSL-RNLSQLFFLDLAKNSYRGTIKLD--VLL-TSW 72 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~--~~~-~~l 72 (549)
++|+|++|.++......+. ..++|++|+|++|.+.......+ ..+++|++|+|++|.+....... ..+ ...
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 4555555555433222222 12455555555555543222222 22344555555555554221111 001 234
Q ss_pred CCCCeEeccCCccceeeccCCC---cCCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCC
Q 040238 73 KNLEFLALSLNRLSVLTKATSN---TTSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQ 134 (549)
Q Consensus 73 ~~L~~L~Ls~n~i~~~~~~~~~---~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~ 134 (549)
++|++|+|++|.|+..+..... ..+++|++|++++|.++. ++..+...++|++|++++|.++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 4555555555544432221111 023445555555555421 2233344445555555555544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=120.71 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=61.5
Q ss_pred ceEEccC-CcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 361 TGIILSN-NSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 361 ~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
+.|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 5555654 666666666777777788888888877777777777777788888888877755555555555 77888888
Q ss_pred CcCcccCC
Q 040238 440 NHLTGLIP 447 (549)
Q Consensus 440 N~l~~~~p 447 (549)
|+|.|.++
T Consensus 113 N~~~c~c~ 120 (347)
T 2ifg_A 113 NPLHCSCA 120 (347)
T ss_dssp SCCCCCGG
T ss_pred CCccCCCc
Confidence 87777654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-13 Score=132.66 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=59.4
Q ss_pred ceEEccCCcCccc----CchhhcCCCCCCEEEccCCccccC----CCcccCCCCCCCEeeCCCCccccc----CCcCccC
Q 040238 361 TGIILSNNSFDSV----IPASIANLKGLQVLNLQNNSLQGH----IPSCLGNLPNLESLDLSNNKFSGQ----IPQQLVE 428 (549)
Q Consensus 361 ~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~ 428 (549)
+.|+|++|.++.. ++..+..+++|++|+|++|.+.+. +++.+...++|+.|+|++|.++.. ++..+..
T Consensus 158 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~ 237 (372)
T 3un9_A 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE 237 (372)
T ss_dssp CEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHH
T ss_pred ceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHh
Confidence 5566666655432 334456778889999999888742 245667778899999999988753 3344556
Q ss_pred CCCCcEEecccCcCcc
Q 040238 429 LTFLEFFNVSDNHLTG 444 (549)
Q Consensus 429 l~~L~~L~l~~N~l~~ 444 (549)
.++|++|++++|+++.
T Consensus 238 ~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 238 HPSLELLHLYFNELSS 253 (372)
T ss_dssp CSSCCEEECTTSSCCH
T ss_pred CCCCCEEeccCCCCCH
Confidence 6889999999998864
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.8e-11 Score=116.79 Aligned_cols=108 Identities=20% Similarity=0.201 Sum_probs=91.6
Q ss_pred ceEEccCC-cCcccCchhhcCCCCCCEEEccC-CccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecc
Q 040238 361 TGIILSNN-SFDSVIPASIANLKGLQVLNLQN-NSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVS 438 (549)
Q Consensus 361 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 438 (549)
..++++++ .+++ +|. +..+++|++|+|++ |.+.+..+..|+++++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45677777 7775 666 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred cCcCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 439 DNHLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 439 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+|+|++..+.......+..+.+.+|++.|+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 99999776544333337777888998888764
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.1e-09 Score=101.81 Aligned_cols=83 Identities=5% Similarity=0.013 Sum_probs=46.9
Q ss_pred cccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCC
Q 040238 18 SIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTS 97 (549)
Q Consensus 18 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 97 (549)
++....+|+.+.+... ++.+...+|.++.+|+.+++..+ ++ .+... +|.++ +|+.+.+..+ +..++...+. .
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~-aF~~c-~l~~i~~~~~-l~~I~~~aF~--~ 112 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDG-AFADT-KLQSYTGMER-VKKFGDYVFQ--G 112 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTT-TTTTC-CCCEEEECTT-CCEECTTTTT--T
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-Eechh-hhcCC-CCceEECCce-eeEeccceec--c
Confidence 3445566777777643 55555667777777777777543 44 33322 35665 5666665533 4555554443 2
Q ss_pred CCCCEEEccCC
Q 040238 98 QKLKYIGLRSC 108 (549)
Q Consensus 98 ~~L~~L~l~~n 108 (549)
.+|+.+.+..+
T Consensus 113 ~~L~~i~lp~~ 123 (379)
T 4h09_A 113 TDLDDFEFPGA 123 (379)
T ss_dssp CCCSEEECCTT
T ss_pred CCcccccCCCc
Confidence 35666666543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-07 Score=93.10 Aligned_cols=132 Identities=12% Similarity=0.093 Sum_probs=73.6
Q ss_pred ccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCch
Q 040238 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPA 376 (549)
Q Consensus 297 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~ 376 (549)
.+....+|+.+.+..+ +..+.... +.++..|+.+.+..+ ...+...+|..+..+ +.+.+.. .++.....
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~--f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l-----~~i~l~~-~i~~i~~~ 280 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGA--FYGMKALDEIAIPKN--VTSIGSFLLQNCTAL-----KTLNFYA-KVKTVPYL 280 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTT--TTTCSSCCEEEECTT--CCEECTTTTTTCTTC-----CEEEECC-CCSEECTT
T ss_pred ccccccccceeeeccc-eeEEcccc--ccCCccceEEEcCCC--ccEeCccccceeehh-----ccccccc-cceecccc
Confidence 3444445555555333 22222222 244555555555443 123444445555554 4444432 24444455
Q ss_pred hhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 377 SIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 377 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
.|.++++|+.+.+.++.++.+...+|.++++|+.++|.++ ++.+-..+|.++.+|+.+.+..+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 6777777777777777776555667777777777777654 55455567777777777766543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.2e-09 Score=101.27 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=37.1
Q ss_pred CCCCCCEEEccCCccccC----CCcccCCCCCCCEeeCCCCcccccCCcCccC-CCCCcEEecccCc
Q 040238 380 NLKGLQVLNLQNNSLQGH----IPSCLGNLPNLESLDLSNNKFSGQIPQQLVE-LTFLEFFNVSDNH 441 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~ 441 (549)
.+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+.. + ...+++++++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 356788888887777643 2233345678888888888776443333332 2 3457777776
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-09 Score=102.79 Aligned_cols=64 Identities=22% Similarity=0.403 Sum_probs=42.2
Q ss_pred CCCCCCEEEccCCccccCCCccc---CCCCCCCEeeCCCCccccc----CCcCccCCCCCcEEecccCcCc
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCL---GNLPNLESLDLSNNKFSGQ----IPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
.+++|++|++++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 46778888887777764322222 2467788888888887753 3334455678888888888765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-08 Score=88.38 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=29.9
Q ss_pred ccCCCCCCEEEccCC-cCCcc----ccccccCCCCCCEEeCCCCcCcccc--CchhhcCCCCCCCeEeccCCccce
Q 040238 19 IGNLRSLEAIHIAKC-NVSGQ----ITSSLRNLSQLFFLDLAKNSYRGTI--KLDVLLTSWKNLEFLALSLNRLSV 87 (549)
Q Consensus 19 ~~~l~~L~~L~Ls~n-~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~ 87 (549)
+...++|++|+|++| .+... +.+.+...++|++|+|++|.+...- .....+...+.|++|+|++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 344455555555555 44321 2233344455555555555553211 111123333445555555554443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-08 Score=85.84 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=78.3
Q ss_pred CcEEECCCC-CCCCc----ccccccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCcccc--Cchhhc
Q 040238 1 LQFLYLRLN-NFSGD----LLGSIGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRGTI--KLDVLL 69 (549)
Q Consensus 1 L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~ 69 (549)
|++|+|++| .+... +...+...++|++|+|++|.+.+. +.+.+...+.|++|+|++|.|...- .....+
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L 117 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL 117 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence 689999999 88754 455667789999999999999753 3455667789999999999997432 122236
Q ss_pred CCCCCCCeEec--cCCccceeeccCCCc---CCCCCCEEEccCCCC
Q 040238 70 TSWKNLEFLAL--SLNRLSVLTKATSNT---TSQKLKYIGLRSCNL 110 (549)
Q Consensus 70 ~~l~~L~~L~L--s~n~i~~~~~~~~~~---~~~~L~~L~l~~n~l 110 (549)
...+.|++|++ ++|.|+..+...... ..++|++|++++|.+
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 77788999999 778776654332221 345666666666654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.29 E-value=8.1e-08 Score=88.48 Aligned_cols=67 Identities=31% Similarity=0.422 Sum_probs=36.1
Q ss_pred cCCCCCCEEEccCCcccc--CCCcccCCCCCCCEeeCCCCcccccCCcCccCCC--CCcEEecccCcCcccCC
Q 040238 379 ANLKGLQVLNLQNNSLQG--HIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT--FLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 379 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~p 447 (549)
..+++|++|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345566666666666654 2334445566666666666666543 1122222 56666666666655444
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-07 Score=77.45 Aligned_cols=91 Identities=12% Similarity=0.021 Sum_probs=66.2
Q ss_pred cccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCc-CccccCchhhcCCC----CCCCeEeccCCc-cceee
Q 040238 16 LGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS-YRGTIKLDVLLTSW----KNLEFLALSLNR-LSVLT 89 (549)
Q Consensus 16 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~l----~~L~~L~Ls~n~-i~~~~ 89 (549)
|.....-.+|++||+++|.+++.--..+.++++|++|+|++|. ++..--.. +..+ ++|++|++++|. |+..+
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4333334579999999999887666778899999999999985 65332222 4553 479999999984 65544
Q ss_pred ccCCCcCCCCCCEEEccCCC
Q 040238 90 KATSNTTSQKLKYIGLRSCN 109 (549)
Q Consensus 90 ~~~~~~~~~~L~~L~l~~n~ 109 (549)
..... .+++|++|++++|.
T Consensus 132 l~~L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGG-GCTTCCEEEEESCT
T ss_pred HHHHh-cCCCCCEEECCCCC
Confidence 44333 68999999999995
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-06 Score=80.45 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=67.6
Q ss_pred EECCCCCCC---CcccccccCCCCCCEEEccCCcCCcc--ccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeE
Q 040238 4 LYLRLNNFS---GDLLGSIGNLRSLEAIHIAKCNVSGQ--ITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFL 78 (549)
Q Consensus 4 L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~~~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L 78 (549)
++++.|... ..+.....++++|++|+|++|.+.+. +++.+..+++|++|+|++|.+++..... .+..+ +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~-~l~~l-~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGL-KLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG-GGTTS-CCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh-hcccC-CcceE
Confidence 456666432 11222225689999999999999874 4577789999999999999998653322 34444 99999
Q ss_pred eccCCccceeec-cC-----CCcCCCCCCEEEc
Q 040238 79 ALSLNRLSVLTK-AT-----SNTTSQKLKYIGL 105 (549)
Q Consensus 79 ~Ls~n~i~~~~~-~~-----~~~~~~~L~~L~l 105 (549)
+|++|.+..... .+ ....+++|+.||=
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 999997764111 00 1126788888863
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-06 Score=74.80 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=53.2
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCc-cccCCCcccCCC----CCCCEeeCCCCc-ccccCCcCccCCCCCcE
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNS-LQGHIPSCLGNL----PNLESLDLSNNK-FSGQIPQQLVELTFLEF 434 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 434 (549)
+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. ++..--..+..+++|+.
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 555666665555444556778888888888885 554333334443 368888888874 76544445667888888
Q ss_pred EecccCc
Q 040238 435 FNVSDNH 441 (549)
Q Consensus 435 L~l~~N~ 441 (549)
|++++|+
T Consensus 144 L~L~~c~ 150 (176)
T 3e4g_A 144 LFLSDLP 150 (176)
T ss_dssp EEEESCT
T ss_pred EECCCCC
Confidence 8888874
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=59.61 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=44.4
Q ss_pred EEEccCCccc-cCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 386 VLNLQNNSLQ-GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 386 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|+|.|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5667777765 24444332 468888888888887667778888889999999999988765
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=6.4e-05 Score=65.28 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=27.3
Q ss_pred cCCCCCCCeEeccCCccceeeccCCCc---CCCCCCEEEccCCCCC-----CCChhhcCCCCccEEEeecC
Q 040238 69 LTSWKNLEFLALSLNRLSVLTKATSNT---TSQKLKYIGLRSCNLT-----KFPNFLQNQYHLLVLDLSDN 131 (549)
Q Consensus 69 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~---~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n 131 (549)
+..-..|+.|+|++|.|...+...... ....|++|+|+.|.++ .+-+.+..-+.|++|+|+++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 334444555555555444333332221 2334555555555442 12233444445666666543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=7e-05 Score=65.06 Aligned_cols=117 Identities=16% Similarity=0.098 Sum_probs=83.7
Q ss_pred ccccCCCCCCEEEccCC-cCCcc----ccccccCCCCCCEEeCCCCcCcc--ccCchhhcCCCCCCCeEeccCCccceee
Q 040238 17 GSIGNLRSLEAIHIAKC-NVSGQ----ITSSLRNLSQLFFLDLAKNSYRG--TIKLDVLLTSWKNLEFLALSLNRLSVLT 89 (549)
Q Consensus 17 ~~~~~l~~L~~L~Ls~n-~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 89 (549)
..+.+-+.|++|+|++| .+... +.+++..-..|+.|+|++|.|.. .......+..-+.|++|+|+.|.|+..+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34456688999999985 77532 45667778899999999999863 3333345667789999999999888766
Q ss_pred ccCCCc---CCCCCCEEEccCC---CCC-----CCChhhcCCCCccEEEeecCcC
Q 040238 90 KATSNT---TSQKLKYIGLRSC---NLT-----KFPNFLQNQYHLLVLDLSDNRI 133 (549)
Q Consensus 90 ~~~~~~---~~~~L~~L~l~~n---~l~-----~l~~~l~~l~~L~~L~l~~n~l 133 (549)
...... ....|++|++++| .++ .+...+..-+.|+.|+++.+.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 544322 4456999999865 332 2334566678899999987654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0015 Score=52.85 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=44.7
Q ss_pred ceEEccCCcCc-ccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 361 TGIILSNNSFD-SVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 361 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
..++.++++++ ..+|..+ .++|++|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46677777776 2444432 247999999999999777788999999999999999885
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 549 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-20 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-17 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-04 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-19 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-04 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.002 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.002 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-11 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-10 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 8e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-06 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-08 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 2e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.004 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 6e-06 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 1e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 8e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.002 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 1e-05 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 1e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 6e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 4e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.002 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.001 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 90.4 bits (223), Expect = 3e-20
Identities = 83/420 (19%), Positives = 141/420 (33%), Gaps = 56/420 (13%)
Query: 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80
L + K NV+ ++ + +L Q+ L + + ++ L NL +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYL----NNLTQINF 73
Query: 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKW 140
S N+L+ +T + T + + ++T N L + + K
Sbjct: 74 SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 141 LLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHY 200
L + + +IS Q L +L T
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL---------------TTLE 178
Query: 201 LASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260
+S S + L LESL+ ++N +S + P + + L L L GN
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKD-- 233
Query: 261 PNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320
+L + + L L L NNQIS+ P L L L L L +N I
Sbjct: 234 ----------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 280
Query: 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIAN 380
+ L+ + + + N T + L N+ + P +++
Sbjct: 281 -----------LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327
Query: 381 LKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440
L LQ L NN + S L NL N+ L +N+ S P L LT + ++D
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 80.4 bits (197), Expect = 6e-17
Identities = 67/380 (17%), Positives = 119/380 (31%), Gaps = 42/380 (11%)
Query: 76 EFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQG 135
E + L + +V T S T ++ + + ++ +L ++ S+N++
Sbjct: 23 EKMKTVLGKTNV-TDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 80
Query: 136 KVP--------KWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQ 187
P L++ N + LTG + +L+ L
Sbjct: 81 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140
Query: 188 GPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELS 247
+ G + + L L +L + + + + L
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200
Query: 248 VLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVL 307
L N P + L+ L L NQ+ D L +L NL L
Sbjct: 201 SLIATNNQISDITPLGI------------LTNLDELSLNGNQLKD--IGTLASLTNLTDL 246
Query: 308 ILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSN 367
L +N + G +KL + L N PL +++ +S
Sbjct: 247 DLANNQISNLA----PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302
Query: 368 NSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLV 427
S LK L L L N++ P + +L L+ L +NNK S L
Sbjct: 303 ISN----------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA 348
Query: 428 ELTFLEFFNVSDNHLTGLIP 447
LT + + + N ++ L P
Sbjct: 349 NLTNINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 61.9 bits (149), Expect = 7e-11
Identities = 61/413 (14%), Positives = 118/413 (28%), Gaps = 78/413 (18%)
Query: 5 YLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIK 64
L+ + + + L +L I+ + ++ + L+NL++L + + N
Sbjct: 48 TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 105
Query: 65 LDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLL 124
L L + +Q L++ N +
Sbjct: 106 LANLTNLTGL------------------TLFNNQITDIDPLKNLTNLNRLELSSNTISDI 147
Query: 125 VLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSN 184
+Q + N + ++ + + A +L + ++N
Sbjct: 148 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 207
Query: 185 NLQGPLPVPPPGTIHYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSS 243
+ P+ + L+ + N L + +L L L L++N +S L P
Sbjct: 208 QISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTK- 264
Query: 244 DELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPN 303
L+ L L N P + N S + L N
Sbjct: 265 --LTELKLGANQISNISPLAGLTALTNLELNENQ--------------LEDISPISNLKN 308
Query: 304 LNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGI 363
L L L N I +KL+ + +NN
Sbjct: 309 LTYLTLYFNNISDISPV----SSLTKLQRLFFANNKVSD--------------------- 343
Query: 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416
+S+ANL + L+ +N + P L NL + L L++
Sbjct: 344 -----------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 43.1 bits (100), Expect = 6e-05
Identities = 51/335 (15%), Positives = 104/335 (31%), Gaps = 40/335 (11%)
Query: 137 VPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPG 196
+ + D + + +T V + + T ++ V
Sbjct: 12 INQIFTDTALAEKMKTVLGKTNVTD-----TVSQTDLDQVTTLQADRLGIKSIDGVEYLN 66
Query: 197 TIHYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNN 255
+ + SNN LT P + NL L +++++N ++ + P + L++ + Q +
Sbjct: 67 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124
Query: 256 FFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFY 315
T + + + I+ Q+S + R +I
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184
Query: 316 GIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIP 375
+ + + L + +NN P + N + L+ N
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITP--------LGILTNLDELSLNGNQLKD--I 234
Query: 376 ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIP------------ 423
++A+L L L+L NN + P L L L L L N+ S P
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292
Query: 424 --------QQLVELTFLEFFNVSDNHLTGLIPPGK 450
+ L L + + N+++ + P
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 327
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L +L L NN S + + +L L+ + A VS SSL NL+ + +L N
Sbjct: 309 LTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364
Query: 61 GTIKLDVLLTSWKNLEFLALSLN 83
L L + L L+
Sbjct: 365 DLTPLANL----TRITQLGLNDQ 383
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 86.3 bits (212), Expect = 3e-19
Identities = 62/273 (22%), Positives = 90/273 (32%), Gaps = 21/273 (7%)
Query: 203 SNNSLTG--EIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260
S +L IPS + NL L L + N +L L + N G I
Sbjct: 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117
Query: 261 PNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320
P+ L L N +S T P + +LPNL + N G I +
Sbjct: 118 PDFLS----------QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIAN 380
+ N + + + + + +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTG---------KIPPTFANLNLAFVDLSRNMLEGDASVLFG 218
Query: 381 LKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440
+ +G NL LDL NN+ G +PQ L +L FL NVS N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 441 HLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSK 473
+L G IP G FD +++ +N LCG PL
Sbjct: 279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 63.6 bits (153), Expect = 1e-11
Identities = 60/305 (19%), Positives = 106/305 (34%), Gaps = 44/305 (14%)
Query: 119 NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178
Y + LDLS + P + ++ NL LN + +
Sbjct: 48 QTYRVNNLDLSGLNLPKPYP---IPSSLANLPYLNFLY--------------------IG 84
Query: 179 FDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 238
+ P + ++ +++G IP ++ + L +L S+N LSG LP
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 239 LGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWL 298
+ + + + + GN G IP+++ ++ S+ N+++ P
Sbjct: 145 ISSLPNLV-GITFDGNRISGAIPDSYGSFSKLFTSMTIS---------RNRLTGKIPPTF 194
Query: 299 GTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIV 358
L V + R+ + +D K+ + S
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD----------LGKVGLSK 244
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
N G+ L NN +P + LK L LN+ N+L G IP GNL + +NNK
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303
Query: 419 SGQIP 423
P
Sbjct: 304 LCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 105 LRSCNLT-KFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHN-FLTGF 162
LR+ + P L L L++S N + G++P+ N+Q + ++N L G
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKCLCGS 307
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 38.2 bits (87), Expect = 0.002
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 127 DLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNL 186
DL +NRI G +P+ L ++ L++LN+S N L G L ++N
Sbjct: 250 DLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQGGNLQR----FDVSAYANNKC 303
Query: 187 QGPLPVPP 194
P+P
Sbjct: 304 LCGSPLPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 38.2 bits (87), Expect = 0.002
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 5 YLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKN 57
LR N G L + L+ L +++++ N+ G+I NL + A N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.3 bits (168), Expect = 2e-13
Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 24/273 (8%)
Query: 175 DLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234
L S L+ PP T NN +T NL L +L+L +N +S +
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 235 LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294
P +L L L N + +P + + L + N+I+
Sbjct: 71 SPGAFAPLV-KLERLYLSKNQL-----------KELPEKMPKTLQE--LRVHENEITKVR 116
Query: 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA 354
S L + V+ L +N E G KL I +++ I T+P
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP----- 170
Query: 355 MKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLS 414
+ T + L N V AS+ L L L L NS+ L N P+L L L+
Sbjct: 171 ---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227
Query: 415 NNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
NNK ++P L + +++ + +N+++ +
Sbjct: 228 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.3 bits (155), Expect = 6e-12
Identities = 44/230 (19%), Positives = 70/230 (30%), Gaps = 22/230 (9%)
Query: 246 LSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305
++LDLQ N F N L L L NN+IS P L L
Sbjct: 33 TALLDLQNNKITEIKDGDFK----------NLKNLHTLILINNKISKISPGAFAPLVKLE 82
Query: 306 VLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIIL 365
L L N + ++ + + I + F N M +V
Sbjct: 83 RLYLSKNQLKELPEKMPKTLQELR------VHENEITKVRKSVFNGLNQMIVVELGTN-- 134
Query: 366 SNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQ 425
+ + +K L + + + ++ IP G P+L L L NK +
Sbjct: 135 -PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAAS 190
Query: 426 LVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGC 475
L L L +S N ++ + +N+ L P
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.0 bits (149), Expect = 4e-11
Identities = 46/271 (16%), Positives = 94/271 (34%), Gaps = 16/271 (5%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L L+ N + G NL++L + + +S + L +L L L+KN +
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
+ + + + L + ++ N ++ + Q
Sbjct: 93 ELP--EKMPKTLQELRVHENEITKVRKSVFNGLNQMIV-VELGTNPLKSSGIENGAFQGM 149
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
L + ++D I +P+ L +L L++ N +T D + N L
Sbjct: 150 KKLSYIRIADTNIT-TIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204
Query: 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL-----L 235
S + + P +NN L ++P + + ++ + L +NN+S +
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263
Query: 236 PQCLGNSSDELSVLDLQGN--NFFGTIPNTF 264
P S + L N ++ P+TF
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.7 bits (143), Expect = 2e-10
Identities = 46/262 (17%), Positives = 78/262 (29%), Gaps = 26/262 (9%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
S+ L ++P + L L +N ++ + N L L L N P
Sbjct: 18 SDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPG 73
Query: 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322
F KLE L L NQ+ + TL L V N + K
Sbjct: 74 AFA----------PLVKLERLYLSKNQLKELPEKMPKTLQELRVH---ENEITKVRKSVF 120
Query: 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLK 382
+ + + G + + I +++ + ++
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIEN------GAFQGMKKLSYIRIADTNITTIPQG---LPP 171
Query: 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442
L L+L N + + L L NL L LS N S L L ++++N L
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231
Query: 443 TGLIPPGKQFATFDNTSFDSNS 464
+ +N+
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNN 253
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.0 bits (136), Expect = 2e-09
Identities = 64/318 (20%), Positives = 102/318 (32%), Gaps = 40/318 (12%)
Query: 106 RSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQH 165
L K P L +LDL +N+I N++NL+ L + +N ++
Sbjct: 18 SDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDF--KNLKNLHTLILINNKISKISPG 73
Query: 166 LVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLV 225
A L LS N L+ P N +T S LN + +
Sbjct: 74 AF---APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130
Query: 226 LSHNNL--SGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFL 283
L N L SG+ +LS + + N IP+ L L L
Sbjct: 131 LGTNPLKSSGIENGAFQGMK-KLSYIRIADTNI-----------TTIPQGL--PPSLTEL 176
Query: 284 GLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGT 343
L N+I+ + L L NL L L N + LR + L+NN +
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--ANTPHLRELHLNNNKLV-- 232
Query: 344 LPLKSFLCWNAMKIVNTTGIILSNNSFDSV------IPASIANLKGLQVLNLQNNSLQGH 397
+ + L NN+ ++ P ++L +N +Q
Sbjct: 233 -----KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287
Query: 398 --IPSCLGNLPNLESLDL 413
PS + ++ L
Sbjct: 288 EIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.6 bits (122), Expect = 1e-07
Identities = 23/114 (20%), Positives = 33/114 (28%)
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
+T + L NN + NLK L L L NN + P L LE L LS N+
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 419 SGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLS 472
+ L L + + G + +
Sbjct: 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (151), Expect = 1e-11
Identities = 46/282 (16%), Positives = 81/282 (28%), Gaps = 26/282 (9%)
Query: 177 LTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236
+T LQ P + N ++ + L L L N L+ +
Sbjct: 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Query: 237 QCLGNSSDELSVLDLQGNNFFGTIPNTF--------------IKERRIPRSLINCSKLEF 282
+ + P TF + P + L++
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 283 LGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIG 342
L L +N + L NL L L N + + G L + L N
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVAH 191
Query: 343 TLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCL 402
P M + N+ ++ ++A L+ LQ L L +N +
Sbjct: 192 VHPHAFRDLGRLMTLYL------FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-R 244
Query: 403 GNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTG 444
L+ S+++ +PQ+L ++ N L G
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 4e-08
Identities = 43/253 (16%), Positives = 74/253 (29%), Gaps = 22/253 (8%)
Query: 216 CNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLI 275
C + L + P + + + L GN +F
Sbjct: 8 CYNEPKVTTSCPQQGLQAV-PVGIPAA---SQRIFLHGNRISHVPAASFR---------- 53
Query: 276 NCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDL 335
C L L L +N ++ + L L L L N + P T G +L + L
Sbjct: 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHL 112
Query: 336 SNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ 395
P + L +N+ ++ + +L L L L N +
Sbjct: 113 DRCGLQELGPGLFRGLAALQYL------YLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 396 GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATF 455
L +L+ L L N+ + P +L L + N+L+ L
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 456 DNT-SFDSNSGLC 467
+ N +C
Sbjct: 227 LQYLRLNDNPWVC 239
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 4e-07
Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 11/188 (5%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
L L+L G L +L+ +++ + + R+L L L L N
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
+ +L+ L L NR++ + + + + L
Sbjct: 167 SVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180
L L L+DN P L S + + LP
Sbjct: 225 RALQYLRLNDNPWVCDCR---ARPLWAWLQKFRGSSSEVPC------SLPQRLAGRDLKR 275
Query: 181 LSSNNLQG 188
L++N+LQG
Sbjct: 276 LAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 5e-07
Identities = 46/259 (17%), Positives = 85/259 (32%), Gaps = 10/259 (3%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
Q ++L N S S R+L + + ++ ++ L+ L LDL+ N+
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF-PNFLQN 119
++ L L L L L L+Y+ L+ L + ++
Sbjct: 94 RSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRD 151
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179
+L L L NRI + + +L+ L + N + H L F
Sbjct: 152 LGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239
+ + L P + ++N + + L+ S + + LPQ L
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRL 268
Query: 240 GNSSDELSVLDLQGNNFFG 258
+ L N+ G
Sbjct: 269 AG----RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 3e-06
Identities = 41/297 (13%), Positives = 73/297 (24%), Gaps = 47/297 (15%)
Query: 100 LKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159
+ I L ++ P L + + + ++ + L
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLN 219
D L L L + +N+L +L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSK 279
L L L N +S + R+
Sbjct: 154 NLTHLFLHGNRISSV-----------------------------------PERAFRGLHS 178
Query: 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339
L+ L L N+++ P L L L L +N + L+ + L++N
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP--TEALAPLRALQYLRLNDNP 236
Query: 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQG 396
++ + W + S V + L G + L N LQG
Sbjct: 237 WVCDCRARPLWAW----------LQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (148), Expect = 4e-11
Identities = 39/272 (14%), Positives = 81/272 (29%), Gaps = 41/272 (15%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPN 262
+ +L ++ + + ++ + + + L + + +DL +
Sbjct: 8 TGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSV------- 57
Query: 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322
I+ + L CSKL+ L L ++SD + L NL L L +
Sbjct: 58 --IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115
Query: 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLC-------------------------WNAMKI 357
S+L ++LS ++ +
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175
Query: 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQN-NSLQGHIPSCLGNLPNLESLDLSNN 416
+ + + L LQ L+L + LG +P L++L +
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235
Query: 417 KFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448
G + L L ++ +H T + P
Sbjct: 236 VPDGTLQLLKEALPHL---QINCSHFTTIARP 264
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 34/254 (13%), Positives = 82/254 (32%), Gaps = 15/254 (5%)
Query: 176 LLTFDLSSNNLQGPLP-VPPPGTIHYLA-SNNSLTGE-IPSWICNLNILESLVLSHNNLS 232
++ F + + PL P + ++ SN+ + + + + L++L L LS
Sbjct: 25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 84
Query: 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
+ L +S +++ L + G L + +
Sbjct: 85 DPIVNTLAKNS---NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141
Query: 293 TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW 352
T+ LN+ R N+ + C +DLS+++ + + F
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL--VHLDLSDSVMLKNDCFQEFFQL 199
Query: 353 NAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLD 412
N ++ ++ + + + L+ L + G + LP+ L
Sbjct: 200 NYLQHLS----LSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQ 252
Query: 413 LSNNKFSGQIPQQL 426
++ + F+ +
Sbjct: 253 INCSHFTTIARPTI 266
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 36/279 (12%), Positives = 82/279 (29%), Gaps = 11/279 (3%)
Query: 78 LALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKV 137
L L+ L T SQ + + + + + + +DLS++ I+
Sbjct: 5 LDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62
Query: 138 PKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGT 197
+L L L++ L+ D + L N + + +
Sbjct: 63 LHGIL-SQCSKLQNLSLEGLRLS--DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119
Query: 198 IHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFF 257
L N + + + + L+ + SD +++ N
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179
Query: 258 GTIPNTFIKERRIPRSLINCSKLEFLGLGN-NQISDTFPSWLGTLPNLNVLILRSNIFYG 316
+ ++ + + + + L+ L L I LG +P L L + + G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239
Query: 317 IIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355
++ + L + ++ + F N
Sbjct: 240 TLQLLK-----EALPHLQINCSHFTTIARPTIGNKKNQE 273
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 57.9 bits (138), Expect = 9e-10
Identities = 55/325 (16%), Positives = 100/325 (30%), Gaps = 25/325 (7%)
Query: 122 HLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDL 181
L+L++ + L +L +L S N LT LP L + +
Sbjct: 39 QAHELELNNLGLSS------LPELPPHLESLVASCNSLT-------ELPELPQSLKSLLV 85
Query: 182 SSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN 241
+NNL+ +PP + ++ E + N + L+ + + +N+L L
Sbjct: 86 DNNNLKALSDLPP---LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 142
Query: 242 SSDELSVLDLQ-GNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT 300
L+ T I + L + L
Sbjct: 143 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN 202
Query: 301 LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360
LP L + +N+ + P + + +L +
Sbjct: 203 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 262
Query: 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420
+ N+ + I + L+ LN+ NN L +P+ P LE L S N +
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA- 317
Query: 421 QIPQQLVELTFLEFFNVSDNHLTGL 445
++P+ L L +V N L
Sbjct: 318 EVPELPQNLKQL---HVEYNPLREF 339
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 52.5 bits (124), Expect = 6e-08
Identities = 44/338 (13%), Positives = 79/338 (23%), Gaps = 23/338 (6%)
Query: 99 KLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF 158
+ + L + L+ P HL L S N + L Q+L +L + +N
Sbjct: 39 QAHELELNNLGLSSLPELPP---HLESLVASCNSLTE------LPELPQSLKSLLVDNNN 89
Query: 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNL 218
L +L + + L
Sbjct: 90 LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP-----DLPPSLEF 144
Query: 219 NILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCS 278
+ L LP +D S+ L L N
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204
Query: 279 KLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNN 338
L + NN + +++ D + +
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264
Query: 339 IFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHI 398
+ + + + +SNN +PA L + L N L +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EV 319
Query: 399 PSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFN 436
P NL + L + N + P + L +
Sbjct: 320 PELPQNL---KQLHVEYNPLR-EFPDIPESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 98 QKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHN 157
L+ + + + L + P L L S N + + QNL L++ +N
Sbjct: 284 PSLEELNVSNNKLIELPALPPR---LERLIASFNHLAE------VPELPQNLKQLHVEYN 334
Query: 158 FLTGF 162
L F
Sbjct: 335 PLREF 339
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.4 bits (90), Expect = 9e-04
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNH 441
+ L L N L +P P+LESL S N + ++P+ L+ V +N+
Sbjct: 38 RQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPE---LPQSLKSLLVDNNN 89
Query: 442 LTGLIPPGKQFATFDNTSFDSNSGLCGRPL 471
L L ++ +
Sbjct: 90 LKALSDLPPLLEYLGVSNNQLEKLPELQNS 119
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.3 bits (87), Expect = 0.002
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 29 HIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVL 88
S +I S L L+++ N KL L LE L S N L+ +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNN------KLIELPALPPRLERLIASFNHLAEV 319
Query: 89 TKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHL 123
+ N LK + + L +FP+ ++ L
Sbjct: 320 PELPQN-----LKQLHVEYNPLREFPDIPESVEDL 349
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 40/223 (17%), Positives = 65/223 (29%), Gaps = 35/223 (15%)
Query: 214 WICNLNILESLV---LSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI 270
IC ++ + S + NL+ L P L ++L L N + T +
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTAL-PPDLPKD---TTILHLSENLLYTFSLATLM----- 52
Query: 271 PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKL 330
++L L L +++ TLP L L L N + +T + L
Sbjct: 53 -----PYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105
Query: 331 RIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIIL---------------SNNSFDSVIP 375
+ N + +NN+ +
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165
Query: 376 ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418
+ L+ L L LQ NSL IP L L N +
Sbjct: 166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 6e-06
Identities = 44/184 (23%), Positives = 64/184 (34%), Gaps = 7/184 (3%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNR 132
K+ L LS N L + AT + +L + L LQ L VL D
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAE----LTKLQVDGTLPVLGTLDLS 85
Query: 133 IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192
LL + L L++S N LT + +L L L
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 193 PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQ 252
P P +NN+LT + L L++L+L N+L + G+ L L
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL--LPFAFLH 203
Query: 253 GNNF 256
GN +
Sbjct: 204 GNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 8e-05
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 377 SIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFN 436
++ + +N +L +P L + L LS N L+ T L N
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 437 VSDNH 441
+
Sbjct: 62 LDRAE 66
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 43/210 (20%), Positives = 56/210 (26%), Gaps = 19/210 (9%)
Query: 105 LRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ 164
NLT P L +L LS+N + L+ L LN+ LT
Sbjct: 17 CDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV 72
Query: 165 HLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESL 224
L + L P S N LT + L L+ L
Sbjct: 73 D---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 225 VLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLG 284
L N L L P + NN +P L L+ L
Sbjct: 130 YLKGNELKTLPPGL--LTPTPKLEKLSLANNNLTELP---------AGLLNGLENLDTLL 178
Query: 285 LGNNQISDTFPSWLGTLPNLNVLILRSNIF 314
L N + T P L L N +
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (131), Expect = 1e-08
Identities = 56/446 (12%), Positives = 121/446 (27%), Gaps = 17/446 (3%)
Query: 1 LQFLYLRLNNFS-GDLLGSIGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLA 55
+Q L ++ S + L+ + + + C ++ I+S+LR L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 56 KN--SYRGTIKL-DVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK 112
N G + L T ++ L+L L+ ++T + L + +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123
Query: 113 FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPAN 172
+ +LD + ++ L A +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183
Query: 173 KGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS 232
G + ++ + + L G + S + +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243
Query: 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
L L + S L L + + R SL S
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303
Query: 293 TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW 352
++ + + + ++ + +N + ++
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363
Query: 353 NAMKIVNTTGIILSNNSFD----SVIPASIANLKGLQVLNLQNNSLQGHIPSCLG----- 403
+ L++ S + A++ L+ L+L NN L L
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 404 NLPNLESLDLSNNKFSGQIPQQLVEL 429
LE L L + +S ++ +L L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (126), Expect = 4e-08
Identities = 58/446 (13%), Positives = 103/446 (23%), Gaps = 27/446 (6%)
Query: 24 SLEAIHIAKCNVS-GQITSSLRNLSQLFFLDLAKN--SYRGTIKLDVLLTSWKNLEFLAL 80
++++ I +S + L L Q + L + + L L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 81 SLNRLS-----VLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQG 135
N L + + S K++ + L++C LT + + + L + +
Sbjct: 63 RSNELGDVGVHCVLQGLQTP-SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121
Query: 136 KVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPP 195
+ + + + +
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYC----SLSAASCEPLASVLRAKPDFKELTVS 177
Query: 196 GTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNN 255
A L + C L L+ + + + S L L L N
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237
Query: 256 FFGT-IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF 314
+ L E L
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297
Query: 315 YGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD--- 371
G T + F A I +N D
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 357
Query: 372 -SVIPASIANLKGLQVLNLQNNSLQG----HIPSCLGNLPNLESLDLSNNKFSGQIPQQL 426
+ L+VL L + + + + L +L LDLSNN QL
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417
Query: 427 VE-----LTFLEFFNVSDNHLTGLIP 447
VE LE + D + + +
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEME 443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (125), Expect = 5e-08
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 358 VNTTGIILSNNSF-DSVIPASIANLKGLQVLNLQNNSLQG----HIPSCLGNLPNLESLD 412
++ + + D+ + L+ QV+ L + L I S L P L L+
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 413 LSNNKFSGQIPQQLVEL 429
L +N+ +++
Sbjct: 62 LRSNELGDVGVHCVLQG 78
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (107), Expect = 7e-06
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 12/103 (11%)
Query: 212 PSWICNLNILESLVLSHNNLSGLLPQCLGNS---SDELSVLDLQGNNFFGTIPNTFIKER 268
++L L L+ ++S L + + L LDL N ++
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 269 RIPRSLINCSKLEFLGLGNNQISDTFPSWLGTL----PNLNVL 307
R LE L L + S+ L L P+L V+
Sbjct: 422 RQ-----PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (107), Expect = 7e-06
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 7/95 (7%)
Query: 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276
+L+ ++SL + LS L + V+ L T + + I +L
Sbjct: 1 SLD-IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL------TEARCKDISSALRV 53
Query: 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRS 311
L L L +N++ D + ++
Sbjct: 54 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 88
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (124), Expect = 3e-08
Identities = 27/224 (12%), Positives = 53/224 (23%), Gaps = 12/224 (5%)
Query: 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN----SSDELSVLDLQGNNFFG 258
+ +T EIPS + L L + E+S D+
Sbjct: 16 QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 72
Query: 259 TIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGII 318
N N + N + +L + ++ ++
Sbjct: 73 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132
Query: 319 KEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIIL-----SNNSFDSV 373
+ R + + L L + NN+ + +
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192
Query: 374 IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417
G +L++ + L NL L + N K
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 24/244 (9%), Positives = 63/244 (25%), Gaps = 17/244 (6%)
Query: 212 PSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIP 271
IC+ + + + ++ + P L L F +
Sbjct: 2 HHRICHCS-NRVFLCQESKVTEI-PSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLE 56
Query: 272 RSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLR 331
+ I+ + + + + + + N+L + F + + ++
Sbjct: 57 KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 116
Query: 332 ----------IIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANL 381
+ + +I + + L+ N + +
Sbjct: 117 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT 176
Query: 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNH 441
+ ++ NN+L+ LD+S + L L L + +
Sbjct: 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YN 234
Query: 442 LTGL 445
L L
Sbjct: 235 LKKL 238
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 53/349 (15%), Positives = 100/349 (28%), Gaps = 42/349 (12%)
Query: 96 TSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLD--PNMQNLNALN 153
+ LK + + + L + + LS N I + +WL + + ++L
Sbjct: 6 EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65
Query: 154 ISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPS 213
S F + P LL L L + A + +
Sbjct: 66 FSDIFTGRVKDEI---PEALRLLLQALLKCPKLHTV-------RLSDNAFGPTAQEPLID 115
Query: 214 WICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRS 273
++ LE L L +N L K + P
Sbjct: 116 FLSKHTPLEHLYLHNNGLGPQAGAK---------------IARALQELAVNKKAKNAPPL 160
Query: 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRII 333
L G+ + L + ++ +L+++
Sbjct: 161 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 220
Query: 334 DLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIAN------LKGLQVL 387
D T S L N + L++ + A++ + GLQ L
Sbjct: 221 D--LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 278
Query: 388 NLQNNSLQGHIPSCL-----GNLPNLESLDLSNNKFS--GQIPQQLVEL 429
LQ N ++ L +P+L L+L+ N+FS + ++ E+
Sbjct: 279 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.9 bits (103), Expect = 5e-06
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 17/133 (12%)
Query: 283 LGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIG 342
L L + ++ L L + L L N + + LR +++
Sbjct: 3 LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP------ALAALRCLEVLQASDNA 54
Query: 343 TLPLKSFLCWNAMKIVNTTGIILSNNSFDSV-IPASIANLKGLQVLNLQNNSL---QGHI 398
+ ++ + L NN + + L +LNLQ NSL +G
Sbjct: 55 LENVDGVANLPRLQELL-----LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109
Query: 399 PSCLGNLPNLESL 411
LP++ S+
Sbjct: 110 ERLAEMLPSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.5 bits (89), Expect = 3e-04
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 6/110 (5%)
Query: 125 VLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSN 184
VL L+ + V L + + L++SHN L L L + ++
Sbjct: 2 VLHLAHKDL--TVLCHL--EQLLLVTHLDLSHNRLRALPPALAALRCLEVL--QASDNAL 55
Query: 185 NLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234
+ P L +N + + L L L N+L
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.2 bits (83), Expect = 0.002
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 26/104 (25%)
Query: 365 LSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNL---------------- 408
L++ + L + L+L +N L+ P+ L L L
Sbjct: 5 LAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGV 61
Query: 409 ------ESLDLSNNKF-SGQIPQQLVELTFLEFFNVSDNHLTGL 445
+ L L NN+ Q LV L N+ N L
Sbjct: 62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.5 bits (81), Expect = 0.004
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 152 LNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEI 211
L+++H LT HL L + DLS N L+ P + + E
Sbjct: 3 LHLAHKDLTVLC-HLEQLLL----VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57
Query: 212 PSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF 256
+ NL L+ L+L +N L S L +L+LQGN+
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 6e-06
Identities = 16/142 (11%), Positives = 41/142 (28%), Gaps = 7/142 (4%)
Query: 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRI 332
N + L L +I + TL + + N + P +L+
Sbjct: 13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP----LLRRLKT 67
Query: 333 IDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNN 392
+ ++NN + +++ T ++ D + +
Sbjct: 68 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL--RNPVT 125
Query: 393 SLQGHIPSCLGNLPNLESLDLS 414
+ + + + +P + LD
Sbjct: 126 NKKHYRLYVIYKVPQVRVLDFQ 147
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 376 ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFF 435
A N + L+L+ + I + L +++D S+N+ L L+
Sbjct: 12 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68
Query: 436 NVSDNHLTGLIPPGKQFATFDNTSFDSNSGL 466
V++N + + Q +N+ L
Sbjct: 69 LVNNNRICRIGEGLDQALPDLTELILTNNSL 99
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.002
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 365 LSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQ 424
L VI A L ++ +N + L L++L ++NN+
Sbjct: 25 LRGYKI-PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNRICRIGEG 81
Query: 425 QLVELTFLEFFNVSDNHLTGL 445
L L +++N L L
Sbjct: 82 LDQALPDLTELILTNNSLVEL 102
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 44.6 bits (104), Expect = 8e-06
Identities = 31/205 (15%), Positives = 57/205 (27%), Gaps = 23/205 (11%)
Query: 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276
L +++ + Q N + + + ++ +
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQG------------IQY 66
Query: 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLS 336
+ L L N+++D P L +K+ + S
Sbjct: 67 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 126
Query: 337 NNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI------PASIANLKGLQVLNLQ 390
N + L+S N T L+ S+ +A L LQ L L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186
Query: 391 NNSLQGHIPSCLGNLPNLESLDLSN 415
N + L L NL+ L+L +
Sbjct: 187 KNHISD--LRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.001
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 365 LSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQ 421
L S + + L + + N+ ++ + LPN+ L L+ NK +
Sbjct: 31 LKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDI 83
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 10/167 (5%)
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
+ ++ + N+ I + LPN+ L L N I +
Sbjct: 46 NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103
Query: 338 NIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGH 397
++ K ++ ++ +S+ + + L
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163
Query: 398 IPSC------LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVS 438
+ L L L++L LS N S + L L L+ +
Sbjct: 164 EDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 44.3 bits (103), Expect = 1e-05
Identities = 32/180 (17%), Positives = 55/180 (30%), Gaps = 8/180 (4%)
Query: 235 LPQCLGNSSDELSV--LDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
+ + + SV + + G IP ++ +L + L L N I
Sbjct: 7 IKDAIRIFEERKSVVATEAEKVELHGMIPPI----EKMDATLSTLKACKHLALSTNNIEK 62
Query: 293 TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW 352
S L + NL +L L N+ I +L I G L +
Sbjct: 63 --ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120
Query: 353 NAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLD 412
T + + + + L +NN+ + + LPNL+ LD
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 1e-05
Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 2/115 (1%)
Query: 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS-CLGNLPNLESLDLSNNK 417
++G+ + + + + L L ++N H+ L L L +L + +
Sbjct: 9 GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 418 FSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLS 472
P L N+S N L L Q + N C L
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 42/229 (18%), Positives = 69/229 (30%), Gaps = 25/229 (10%)
Query: 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276
L + +N++ + Q D ++ L G TI +
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGV-TTIEG-----------VQY 61
Query: 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLS 336
+ L L L +NQI+D P T L I ++
Sbjct: 62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121
Query: 337 NNIFIGT------LPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQ 390
G + + + T LS + +ANL L L
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181
Query: 391 NNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439
+N + P L +LPNL + L NN+ S P L + L +++
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 10/181 (5%)
Query: 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFY------GIIKEPRTDCG 326
+ + + L ++ + L NL L L+ N + K +
Sbjct: 36 TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93
Query: 327 FSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQV 386
+ L+ + + + + + + + I +
Sbjct: 94 GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153
Query: 387 LNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLI 446
L + Q + L NL L +L +NK S P L L L ++ +N ++ +
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211
Query: 447 P 447
P
Sbjct: 212 P 212
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 4e-04
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 13/121 (10%)
Query: 329 KLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLN 388
+ +DL L ++ ++ +S + + N+ L LN
Sbjct: 23 SQQALDLKGLRSDPDLVAQNIDV-----------VLNRRSSMAATLRIIEENIPELLSLN 71
Query: 389 LQNNSLQGH--IPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLI 446
L NN L + S + PNL+ L+LS N+ + ++ LE + N L+
Sbjct: 72 LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131
Query: 447 P 447
Sbjct: 132 R 132
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.002
Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 6/131 (4%)
Query: 64 KLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHL 123
+L ++++ + AL L L + L RS +N L
Sbjct: 11 QLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN---RRSSMAATLRIIEENIPEL 67
Query: 124 LVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSS 183
L L+LS+NR+ + NL LN+S N L + + L L
Sbjct: 68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE---LDKIKGLKLEELWLDG 124
Query: 184 NNLQGPLPVPP 194
N+L
Sbjct: 125 NSLSDTFRDQS 135
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.001
Identities = 29/167 (17%), Positives = 49/167 (29%), Gaps = 9/167 (5%)
Query: 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRI 332
S + ++ L I + L NL + +N I L
Sbjct: 35 SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 92
Query: 333 IDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV------IPASIANLKGLQV 386
+ +I + + + + + + I A +
Sbjct: 93 NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 152
Query: 387 LNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG-QIPQQLVELTFL 432
L +S Q L NL LE LD+S+NK S + +L L L
Sbjct: 153 QQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.9 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.84 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.78 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.73 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.73 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.72 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.71 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.7 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.56 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.55 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.47 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.46 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.33 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.3 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.3 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.23 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.45 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.38 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.83 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.82 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.29 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.0 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=7.3e-28 Score=238.39 Aligned_cols=194 Identities=29% Similarity=0.396 Sum_probs=151.6
Q ss_pred chhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCC
Q 040238 212 PSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS 291 (549)
Q Consensus 212 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 291 (549)
...+..++.++.+++++|.+.+..|. . ..++|++|++++|.++.. ..+..+++|+.|++++|.++
T Consensus 190 ~~~~~~l~~~~~l~l~~n~i~~~~~~--~-~~~~L~~L~l~~n~l~~~------------~~l~~l~~L~~L~l~~n~l~ 254 (384)
T d2omza2 190 ISVLAKLTNLESLIATNNQISDITPL--G-ILTNLDELSLNGNQLKDI------------GTLASLTNLTDLDLANNQIS 254 (384)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGGG--G-GCTTCCEEECCSSCCCCC------------GGGGGCTTCSEEECCSSCCC
T ss_pred ccccccccccceeeccCCccCCCCcc--c-ccCCCCEEECCCCCCCCc------------chhhcccccchhccccCccC
Confidence 34567788888999998888855442 2 234788999998887642 23567888999999999888
Q ss_pred CCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCc
Q 040238 292 DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD 371 (549)
Q Consensus 292 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~ 371 (549)
+..+ ++.+++|++|++++|.+.+..+ +..++.++.+++++|.+.+. ..+..+..+ +.|++++|+++
T Consensus 255 ~~~~--~~~~~~L~~L~l~~~~l~~~~~----~~~~~~l~~l~~~~n~l~~~---~~~~~~~~l-----~~L~ls~n~l~ 320 (384)
T d2omza2 255 NLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDI---SPISNLKNL-----TYLTLYFNNIS 320 (384)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCC---GGGGGCTTC-----SEEECCSSCCS
T ss_pred CCCc--ccccccCCEeeccCcccCCCCc----cccccccccccccccccccc---cccchhccc-----CeEECCCCCCC
Confidence 6543 7788899999999988876543 35678889999998887642 125555555 88999999998
Q ss_pred ccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 372 SVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 372 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.. .+..+++|++|++++|++++ ++ .++++++|+.|++++|++++..| +.++++|+.|++++|
T Consensus 321 ~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 321 DIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 753 37889999999999999984 44 58999999999999999997654 889999999999998
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=1.3e-29 Score=243.51 Aligned_cols=258 Identities=33% Similarity=0.486 Sum_probs=217.3
Q ss_pred CcceeecccCCCCC--cCchhhhcCCCCCeEeCcC-CcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCc
Q 040238 196 GTIHYLASNNSLTG--EIPSWICNLNILESLVLSH-NNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPR 272 (549)
Q Consensus 196 ~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 272 (549)
+++.|+++++.+.+ .+|..+.++++|++|+|++ |.+.|.+|..+..+. +|++|+|++|++.+..+..
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~--------- 120 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDF--------- 120 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGG---------
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccccc-ccchhhhcccccccccccc---------
Confidence 34555555555554 4778899999999999986 788888998888766 8999999999988766544
Q ss_pred cccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCC-ceeeCCCCccccccChhhhhc
Q 040238 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKL-RIIDLSNNIFIGTLPLKSFLC 351 (549)
Q Consensus 273 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L-~~L~ls~n~l~~~~~~~~~~~ 351 (549)
+..++.|+.+++++|.+.+.+|..+..++.++.+++++|.+.+..+... ..+..+ +.+++++|++.+..|.. +..
T Consensus 121 -~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~-~~~ 196 (313)
T d1ogqa_ 121 -LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT-FAN 196 (313)
T ss_dssp -GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-GGG
T ss_pred -ccchhhhcccccccccccccCchhhccCcccceeecccccccccccccc--cccccccccccccccccccccccc-ccc
Confidence 4678899999999999988888899999999999999999888766554 556654 88999999998877743 322
Q ss_pred cccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCC
Q 040238 352 WNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTF 431 (549)
Q Consensus 352 l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 431 (549)
+....++++++...+.+|..+..+++++.+++++|.+.+.++ .++.+++|+.|++++|++++.+|..|.++++
T Consensus 197 ------l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~ 269 (313)
T d1ogqa_ 197 ------LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp ------CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ------cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCC
Confidence 233678999999999999999999999999999999996655 5888999999999999999999999999999
Q ss_pred CcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCCCCCCC
Q 040238 432 LEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGC 475 (549)
Q Consensus 432 L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~c 475 (549)
|++|+|++|+++|.+|....+..++...+.+|+.+||.|+. .|
T Consensus 270 L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c 312 (313)
T d1ogqa_ 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence 99999999999999998888889999999999999999874 55
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=5.2e-26 Score=224.93 Aligned_cols=355 Identities=23% Similarity=0.265 Sum_probs=250.6
Q ss_pred CCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCcc
Q 040238 6 LRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRL 85 (549)
Q Consensus 6 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i 85 (549)
++.+.+++.+. ...+.+|++|+++++++.+. +.+..+++|++|++++|++++.. . +.++++|++|++++|.+
T Consensus 29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~--l~~L~~L~~L~L~~n~i 100 (384)
T d2omza2 29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--P--LKNLTKLVDILMNNNQI 100 (384)
T ss_dssp TTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCC
T ss_pred hCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--c--ccCCccccccccccccc
Confidence 44555655443 34677899999999998864 45788999999999999998533 2 78999999999999988
Q ss_pred ceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCc
Q 040238 86 SVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQH 165 (549)
Q Consensus 86 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 165 (549)
..+... ..+++|+.|+++++.++.++. ......+..+....+.+....+.... ..................
T Consensus 101 ~~i~~l---~~l~~L~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~--- 171 (384)
T d2omza2 101 ADITPL---ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGL--TSLQQLSFGNQVTDLKPL--- 171 (384)
T ss_dssp CCCGGG---TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTC--TTCSEEEEEESCCCCGGG---
T ss_pred cccccc---ccccccccccccccccccccc-cccccccccccccccccccccccccc--ccccccccccccchhhhh---
Confidence 766542 268899999999998877654 44556777888887776543332221 111111111111111110
Q ss_pred cccccCCCCCccEEEccCCcCCCCC-CCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCC
Q 040238 166 LVVLPANKGDLLTFDLSSNNLQGPL-PVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSD 244 (549)
Q Consensus 166 ~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 244 (549)
.... .........+...... ...+++++.+++++|.+.+..| +..+++|++|++++|.+++ ++ .+... +
T Consensus 172 ---~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l~~l-~ 241 (384)
T d2omza2 172 ---ANLT--TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLASL-T 241 (384)
T ss_dssp ---TTCT--TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGC-T
T ss_pred ---cccc--ccccccccccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cc-hhhcc-c
Confidence 0011 1333344444333221 2236778888888888876544 4567889999999998874 33 34443 4
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
+|+.+++++|.+++..+ +..+++|++|+++++++.+.. .+..++.++.+.+.+|.+.+... +
T Consensus 242 ~L~~L~l~~n~l~~~~~------------~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~~----~ 303 (384)
T d2omza2 242 NLTDLDLANNQISNLAP------------LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP----I 303 (384)
T ss_dssp TCSEEECCSSCCCCCGG------------GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG----G
T ss_pred ccchhccccCccCCCCc------------ccccccCCEeeccCcccCCCC--ccccccccccccccccccccccc----c
Confidence 89999999998875432 467889999999999988543 37788899999999998876532 3
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
..+++++.|++++|++.+..+ +..+++| +.|++++|.+++. + .+.++++|++|++++|++++..| +.+
T Consensus 304 ~~~~~l~~L~ls~n~l~~l~~---l~~l~~L-----~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~ 371 (384)
T d2omza2 304 SNLKNLTYLTLYFNNISDISP---VSSLTKL-----QRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LAN 371 (384)
T ss_dssp GGCTTCSEEECCSSCCSCCGG---GGGCTTC-----CEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTT
T ss_pred chhcccCeEECCCCCCCCCcc---cccCCCC-----CEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hcc
Confidence 678899999999999876432 5666666 9999999999863 3 58999999999999999996554 899
Q ss_pred CCCCCEeeCCCCc
Q 040238 405 LPNLESLDLSNNK 417 (549)
Q Consensus 405 l~~L~~L~l~~n~ 417 (549)
+++|+.|+|++|.
T Consensus 372 l~~L~~L~L~~Na 384 (384)
T d2omza2 372 LTRITQLGLNDQA 384 (384)
T ss_dssp CTTCSEEECCCEE
T ss_pred CCCCCEeeCCCCc
Confidence 9999999999983
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.94 E-value=2.5e-27 Score=227.38 Aligned_cols=250 Identities=30% Similarity=0.414 Sum_probs=209.0
Q ss_pred ccEEEccCCcCCCC--CCCC---CCCcceeeccc-CCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCee
Q 040238 176 LLTFDLSSNNLQGP--LPVP---PPGTIHYLASN-NSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVL 249 (549)
Q Consensus 176 L~~L~L~~n~l~~~--~~~~---~~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 249 (549)
++.|+|+++.+.+. +|.. +++|++|++++ |.+.+.+|..+.++++|++|+|++|++.+..+..+.... .|+++
T Consensus 52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~~l 130 (313)
T d1ogqa_ 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEE
T ss_pred EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchh-hhccc
Confidence 77777777777763 4443 77888888876 788889999999999999999999999977777666655 89999
Q ss_pred ecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCC-CEEEccCcccccccCCCCCccCCC
Q 040238 250 DLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNL-NVLILRSNIFYGIIKEPRTDCGFS 328 (549)
Q Consensus 250 ~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~l~ 328 (549)
++++|.+.+.+| ..+..++.++++++++|.+.+.+|..+..+..+ +.+++++|++.+..+..+ ..+.
T Consensus 131 ~l~~N~~~~~~p----------~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~--~~l~ 198 (313)
T d1ogqa_ 131 DFSYNALSGTLP----------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN 198 (313)
T ss_dssp ECCSSEEESCCC----------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC
T ss_pred ccccccccccCc----------hhhccCcccceeeccccccccccccccccccccccccccccccccccccccc--cccc
Confidence 999999886654 455889999999999999999999988888876 889999999998876554 4444
Q ss_pred CCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCC
Q 040238 329 KLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNL 408 (549)
Q Consensus 329 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 408 (549)
...++++++...+.+|.. +..+..+ +.+++++|.+.+.++ .+..+++|+.|++++|++++.+|+.|+++++|
T Consensus 199 -~~~l~l~~~~~~~~~~~~-~~~~~~l-----~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L 270 (313)
T d1ogqa_ 199 -LAFVDLSRNMLEGDASVL-FGSDKNT-----QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp -CSEEECCSSEEEECCGGG-CCTTSCC-----SEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred -cccccccccccccccccc-ccccccc-----ccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCC
Confidence 457999999988877643 5555556 899999999987765 58889999999999999999999999999999
Q ss_pred CEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 409 ESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 409 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+.|+|++|+++|.+|. +.++++|+.+++++|+..|..|
T Consensus 271 ~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 271 HSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred CEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence 9999999999999985 6789999999999998554433
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=6.6e-24 Score=202.53 Aligned_cols=284 Identities=19% Similarity=0.216 Sum_probs=176.7
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+++|-+++.++ .+|..+. +++++|+|++|+++...+..|.++++|++|++++|.+....+.. |.++++|++|+++
T Consensus 13 ~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~--f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 13 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA--FAPLVKLERLYLS 87 (305)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT--TTTCTTCCEEECC
T ss_pred CEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh--hhCCCccCEeccc
Confidence 56788888887 4465553 67999999999998877778999999999999999998655655 8899999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCC--CCCCcccccccCCCCcEEEccCCc
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQ--GKVPKWLLDPNMQNLNALNISHNF 158 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~l~~L~~L~L~~n~ 158 (549)
+|+++.++.. ....++.|.+.+|.+..++. .+.....+..++...+... ...+..+. .+++|+.+++++|.
T Consensus 88 ~n~l~~l~~~----~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~--~l~~L~~l~l~~n~ 161 (305)
T d1xkua_ 88 KNQLKELPEK----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ--GMKKLSYIRIADTN 161 (305)
T ss_dssp SSCCSBCCSS----CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG--GCTTCCEEECCSSC
T ss_pred CCccCcCccc----hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccc--cccccCccccccCC
Confidence 9988877654 24578889999888877775 4556677777877776533 22234444 66777777777776
Q ss_pred CCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcc
Q 040238 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 238 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 238 (549)
+...+.. .++++++|++.+|......+..+..++.++.|++++|.+.+..+..
T Consensus 162 l~~l~~~---------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~ 214 (305)
T d1xkua_ 162 ITTIPQG---------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214 (305)
T ss_dssp CCSCCSS---------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCcc---------------------------cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc
Confidence 5543322 1223334444444444455556666666666666666666444433
Q ss_pred hhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccccccc
Q 040238 239 LGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGII 318 (549)
Q Consensus 239 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 318 (549)
+.... +|++|+|++|+++. +|.++..+++|++|++++|+++......|...
T Consensus 215 ~~~l~-~L~~L~L~~N~L~~-----------lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~----------------- 265 (305)
T d1xkua_ 215 LANTP-HLRELHLNNNKLVK-----------VPGGLADHKYIQVVYLHNNNISAIGSNDFCPP----------------- 265 (305)
T ss_dssp GGGST-TCCEEECCSSCCSS-----------CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS-----------------
T ss_pred ccccc-cceeeecccccccc-----------cccccccccCCCEEECCCCccCccChhhccCc-----------------
Confidence 33322 55555555555542 22233445555555555555553322222110
Q ss_pred CCCCCccCCCCCceeeCCCCccc-cccChhhhhccccc
Q 040238 319 KEPRTDCGFSKLRIIDLSNNIFI-GTLPLKSFLCWNAM 355 (549)
Q Consensus 319 ~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~~l~~l 355 (549)
.......+|+.|++++|++. ..+++.+|..+...
T Consensus 266 ---~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~ 300 (305)
T d1xkua_ 266 ---GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300 (305)
T ss_dssp ---SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred ---chhcccCCCCEEECCCCcCccCcCCHhHhcccccC
Confidence 01133455666666666553 45566666555443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=4.1e-23 Score=196.93 Aligned_cols=268 Identities=22% Similarity=0.230 Sum_probs=154.8
Q ss_pred CCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEE
Q 040238 74 NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNAL 152 (549)
Q Consensus 74 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 152 (549)
..+.+|.++++++.+|... .+++++|++++|+++++|+ .|.++++|++|++++|.+....|..|. .+++|++|
T Consensus 11 ~~~~~~C~~~~L~~lP~~l----~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~--~l~~L~~L 84 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA--PLVKLERL 84 (305)
T ss_dssp ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEE
T ss_pred cCCEEEecCCCCCccCCCC----CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhh--CCCccCEe
Confidence 4567777777676665532 2567888888888877775 577777888888888887766666676 77777777
Q ss_pred EccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCC
Q 040238 153 NISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS 232 (549)
Q Consensus 153 ~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 232 (549)
++++|++..++.... ..+..|++..|.+ .+..+..+.....+..++...|...
T Consensus 85 ~l~~n~l~~l~~~~~------~~l~~L~~~~n~l---------------------~~l~~~~~~~~~~~~~l~~~~n~~~ 137 (305)
T d1xkua_ 85 YLSKNQLKELPEKMP------KTLQELRVHENEI---------------------TKVRKSVFNGLNQMIVVELGTNPLK 137 (305)
T ss_dssp ECCSSCCSBCCSSCC------TTCCEEECCSSCC---------------------CBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred cccCCccCcCccchh------hhhhhhhccccch---------------------hhhhhhhhhcccccccccccccccc
Confidence 777777665543311 1134444433333 3333333444445555555544322
Q ss_pred CcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCc
Q 040238 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSN 312 (549)
Q Consensus 233 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 312 (549)
... ..+..+..+++|+.+++++|.+.. ++.. .+++|+.|++++|
T Consensus 138 ~~~---------------------------------~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n 181 (305)
T d1xkua_ 138 SSG---------------------------------IENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGN 181 (305)
T ss_dssp GGG---------------------------------BCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTS
T ss_pred ccC---------------------------------CCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCC
Confidence 110 001123344555555555555542 2221 2345555565555
Q ss_pred ccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCC
Q 040238 313 IFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNN 392 (549)
Q Consensus 313 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 392 (549)
......+..+ .+++.++.|++++|.+. +..+..|.++++|++|+|++|
T Consensus 182 ~~~~~~~~~~--~~~~~l~~L~~s~n~l~------------------------------~~~~~~~~~l~~L~~L~L~~N 229 (305)
T d1xkua_ 182 KITKVDAASL--KGLNNLAKLGLSFNSIS------------------------------AVDNGSLANTPHLRELHLNNN 229 (305)
T ss_dssp CCCEECTGGG--TTCTTCCEEECCSSCCC------------------------------EECTTTGGGSTTCCEEECCSS
T ss_pred cCCCCChhHh--hcccccccccccccccc------------------------------ccccccccccccceeeecccc
Confidence 5554433322 44445555544444432 333445666777777777777
Q ss_pred ccccCCCcccCCCCCCCEeeCCCCcccccCCcC------ccCCCCCcEEecccCcCc
Q 040238 393 SLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQ------LVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 393 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l~~N~l~ 443 (549)
+++ .+|++|..+++|+.|++++|+|+...... +..+.+|+.|++++|++.
T Consensus 230 ~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 230 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 776 55667777777777777777777443333 334577888888888875
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.3e-24 Score=200.82 Aligned_cols=164 Identities=24% Similarity=0.270 Sum_probs=110.2
Q ss_pred CCCCcEEEcc-CCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc
Q 040238 277 CSKLEFLGLG-NNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355 (549)
Q Consensus 277 ~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 355 (549)
++.++.++.. .+.++...+..|.++++|++|++++|.+.......+ ..+.+|+.+++++|++. .+|.++|..+..+
T Consensus 79 ~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L 155 (284)
T d1ozna_ 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFRDLGNL 155 (284)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred cccccccccccccccccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhcccccc-ccChhHhccccch
Confidence 3344444332 233333334444555555555555555444333222 44455555555555544 3344445555555
Q ss_pred cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEE
Q 040238 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFF 435 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 435 (549)
+.|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|+.|++++|++.+..+..|..+++|++|
T Consensus 156 -----~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L 230 (284)
T d1ozna_ 156 -----THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (284)
T ss_dssp -----CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred -----hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence 666777777777777888889999999999999988888889999999999999999988777888889999999
Q ss_pred ecccCcCcccCCC
Q 040238 436 NVSDNHLTGLIPP 448 (549)
Q Consensus 436 ~l~~N~l~~~~p~ 448 (549)
++++|++.|.++.
T Consensus 231 ~l~~N~l~C~C~~ 243 (284)
T d1ozna_ 231 RLNDNPWVCDCRA 243 (284)
T ss_dssp ECCSSCEECSGGG
T ss_pred EecCCCCCCCccc
Confidence 9999999988763
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7.5e-23 Score=190.64 Aligned_cols=205 Identities=24% Similarity=0.310 Sum_probs=162.3
Q ss_pred cCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCc
Q 040238 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS 296 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~ 296 (549)
....+.+.+.+++.++ .+|..+. +++++|+|++|.+++..+.. |.++++|++|++++|+++.. +
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~----------f~~l~~L~~L~L~~N~l~~l-~- 71 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLAT----------LMPYTRLTQLNLDRAELTKL-Q- 71 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGG----------GTTCTTCCEEECTTSCCCEE-E-
T ss_pred ccCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHH----------hhcccccccccccccccccc-c-
Confidence 3455666788888777 5676543 36888888888887544333 46788888888888888743 2
Q ss_pred ccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCch
Q 040238 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPA 376 (549)
Q Consensus 297 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~ 376 (549)
.++.+++|++|++++|++..... .+.++++|+.|++++|.+. .++...+..+..+ ..|++++|.+++..+.
T Consensus 72 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l-----~~L~l~~n~l~~l~~~ 142 (266)
T d1p9ag_ 72 VDGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL-----QELYLKGNELKTLPPG 142 (266)
T ss_dssp CCSCCTTCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTC-----CEEECTTSCCCCCCTT
T ss_pred ccccccccccccccccccccccc---ccccccccccccccccccc-eeecccccccccc-----ccccccccccceeccc
Confidence 35678888888888888776532 2367788888888888865 3444556666666 8889999999888888
Q ss_pred hhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 377 SIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 377 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
.+..++.|+.|++++|++++..++.|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|.|.|.
T Consensus 143 ~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~ 212 (266)
T d1p9ag_ 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (266)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence 8999999999999999999888888999999999999999999 788888899999999999999998875
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2e-22 Score=189.81 Aligned_cols=227 Identities=18% Similarity=0.217 Sum_probs=188.3
Q ss_pred eEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCC
Q 040238 223 SLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLP 302 (549)
Q Consensus 223 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 302 (549)
.++.+++.++ .+|..+ ++.+++|+|++|++++..+.. +.++++|++|++++|++....+..+..+.
T Consensus 15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~----------f~~l~~L~~L~ls~n~l~~i~~~~~~~~~ 80 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAAS----------FRACRNLTILWLHSNVLARIDAAAFTGLA 80 (284)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTT----------TTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHH----------hhccccccccccccccccccccccccccc
Confidence 4566777777 667654 347899999999998665444 47889999999999999988888888899
Q ss_pred CCCEEEcc-CcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCC
Q 040238 303 NLNVLILR-SNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANL 381 (549)
Q Consensus 303 ~L~~L~L~-~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l 381 (549)
.++.+... .+.+..+.+..+ .++++|++|++++|.+. .++...+.....+ +.+++++|.++++.+..|..+
T Consensus 81 ~~~~l~~~~~~~~~~l~~~~~--~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L-----~~l~l~~N~l~~i~~~~f~~~ 152 (284)
T d1ozna_ 81 LLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHLDRCGLQ-ELGPGLFRGLAAL-----QYLYLQDNALQALPDDTFRDL 152 (284)
T ss_dssp TCCEEECCSCTTCCCCCTTTT--TTCTTCCEEECTTSCCC-CCCTTTTTTCTTC-----CEEECCSSCCCCCCTTTTTTC
T ss_pred cccccccccccccccccchhh--cccccCCEEecCCcccc-cccccccchhccc-----chhhhccccccccChhHhccc
Confidence 99998875 555666655554 88999999999999975 4455556666666 999999999998888899999
Q ss_pred CCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCcc
Q 040238 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSF 460 (549)
Q Consensus 382 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~ 460 (549)
++|++|++++|++.+..+.+|.++++|+.+++++|++++..|..|..+++|++|++++|.+.+..|.. .....++.+.+
T Consensus 153 ~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l 232 (284)
T d1ozna_ 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (284)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred cchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEe
Confidence 99999999999999888899999999999999999999999999999999999999999999776532 34556677778
Q ss_pred CCCCCCCCCCC
Q 040238 461 DSNSGLCGRPL 471 (549)
Q Consensus 461 ~~n~~lc~~~~ 471 (549)
.+||+.|+|+.
T Consensus 233 ~~N~l~C~C~~ 243 (284)
T d1ozna_ 233 NDNPWVCDCRA 243 (284)
T ss_dssp CSSCEECSGGG
T ss_pred cCCCCCCCccc
Confidence 88888776543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.2e-22 Score=184.85 Aligned_cols=202 Identities=23% Similarity=0.210 Sum_probs=171.4
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
++.+++.+++.++. +|.. + .+++++|+|++|++++..+..|..+++|++|+|++|.++.+...
T Consensus 11 ~~~~v~C~~~~L~~-iP~~----------l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~---- 73 (266)
T d1p9ag_ 11 SHLEVNCDKRNLTA-LPPD----------L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---- 73 (266)
T ss_dssp TCCEEECTTSCCSS-CCSC----------C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----
T ss_pred CCeEEEccCCCCCe-eCcC----------c--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc----
Confidence 56778999998874 3332 2 25799999999999987778899999999999999999876432
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
..+++|+.|++++|++.+. + ..+..++.+ +.|++++|.+.+..+..+..+.++++|++++|.+.+..+..+..
T Consensus 74 ~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~L-----~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~ 146 (266)
T d1p9ag_ 74 GTLPVLGTLDLSHNQLQSL-P-LLGQTLPAL-----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146 (266)
T ss_dssp SCCTTCCEEECCSSCCSSC-C-CCTTTCTTC-----CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccccccccccccccccccc-c-ccccccccc-----ccccccccccceeeccccccccccccccccccccceeccccccc
Confidence 5789999999999998753 2 246666666 99999999999998999999999999999999999877888899
Q ss_pred CCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC-CCCCCccCCCccCCCCCCCCCCC
Q 040238 405 LPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP-GKQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
+++|+.|++++|++++..+..|..+++|++|+|++|+++ .+|. ......++.+.+.||||.|+|.+
T Consensus 147 l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~ 213 (266)
T d1p9ag_ 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (266)
T ss_dssp CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence 999999999999999888888999999999999999999 4554 35566777888999999998643
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.84 E-value=3.6e-18 Score=165.71 Aligned_cols=114 Identities=23% Similarity=0.320 Sum_probs=71.3
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
++++|+|++++++. +|+. .++|++|++++|+++ .+|.. ..+|+.|++++|+++.++..+ +.|++|
T Consensus 39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~-----~~~L~~L~l~~n~l~~l~~lp-----~~L~~L 103 (353)
T d1jl5a_ 39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL-----PQSLKSLLVDNNNLKALSDLP-----PLLEYL 103 (353)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC-----CTTCCEEECCSSCCSCCCSCC-----TTCCEE
T ss_pred CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc-----hhhhhhhhhhhcccchhhhhc-----cccccc
Confidence 57777777777764 3432 456777777777776 44532 346777777777766665432 357777
Q ss_pred EccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 104 GLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 104 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
++++|.++.+|. +..+++|++|+++++.+.. .+. ....+..+.+..+..
T Consensus 104 ~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~-~~~-----~~~~l~~l~~~~~~~ 152 (353)
T d1jl5a_ 104 GVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKK-LPD-----LPPSLEFIAAGNNQL 152 (353)
T ss_dssp ECCSSCCSSCCC-CTTCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCC
T ss_pred cccccccccccc-hhhhccceeeccccccccc-ccc-----ccccccchhhccccc
Confidence 777777777764 4567777777777776652 222 234555666655443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.84 E-value=4.5e-18 Score=165.03 Aligned_cols=302 Identities=26% Similarity=0.289 Sum_probs=186.8
Q ss_pred CCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEE
Q 040238 48 QLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLD 127 (549)
Q Consensus 48 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~ 127 (549)
++++|||+++.++ .+|.. .++|++|++++|+|+.++.. ..+|++|++++|.++.++.. .+.|++|+
T Consensus 39 ~l~~LdLs~~~L~-~lp~~-----~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~ 104 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL-----PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDL---PPLLEYLG 104 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC-----CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred CCCEEEeCCCCCC-CCCCC-----CCCCCEEECCCCCCcccccc-----hhhhhhhhhhhcccchhhhh---cccccccc
Confidence 5778888888776 45532 35778888888877766543 35788888888877666532 24577888
Q ss_pred eecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCC
Q 040238 128 LSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSL 207 (549)
Q Consensus 128 l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~ 207 (549)
+++|.+. .+|. +. .+++|++|+++++.+...+... ..+..+.+..+....
T Consensus 105 L~~n~l~-~lp~-~~--~l~~L~~L~l~~~~~~~~~~~~-------~~l~~l~~~~~~~~~------------------- 154 (353)
T d1jl5a_ 105 VSNNQLE-KLPE-LQ--NSSFLKIIDVDNNSLKKLPDLP-------PSLEFIAAGNNQLEE------------------- 154 (353)
T ss_dssp CCSSCCS-SCCC-CT--TCTTCCEEECCSSCCSCCCCCC-------TTCCEEECCSSCCSS-------------------
T ss_pred ccccccc-cccc-hh--hhccceeecccccccccccccc-------ccccchhhccccccc-------------------
Confidence 8888776 4443 33 6777777777777665443321 114555554443321
Q ss_pred CCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccC
Q 040238 208 TGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGN 287 (549)
Q Consensus 208 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 287 (549)
...+..++.++.+++++|.... .+... ...+.+...++.+... ..+..++.|+.+++++
T Consensus 155 ----~~~l~~l~~l~~L~l~~n~~~~-~~~~~----~~~~~l~~~~~~~~~~------------~~~~~l~~L~~l~l~~ 213 (353)
T d1jl5a_ 155 ----LPELQNLPFLTAIYADNNSLKK-LPDLP----LSLESIVAGNNILEEL------------PELQNLPFLTTIYADN 213 (353)
T ss_dssp ----CCCCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEEECCSSCCSSC------------CCCTTCTTCCEEECCS
T ss_pred ----cccccccccceecccccccccc-ccccc----cccccccccccccccc------------cccccccccccccccc
Confidence 2234556777888888777652 22211 1344555555444321 1135677888888888
Q ss_pred CcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccC
Q 040238 288 NQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSN 367 (549)
Q Consensus 288 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~ 367 (549)
|.... .+ ....++..+.+.++.+.... .....+...++..+.+.+. ..+. ......++..
T Consensus 214 n~~~~-~~---~~~~~l~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~l---------~~l~-~~~~~~~~~~ 273 (353)
T d1jl5a_ 214 NLLKT-LP---DLPPSLEALNVRDNYLTDLP------ELPQSLTFLDVSENIFSGL---------SELP-PNLYYLNASS 273 (353)
T ss_dssp SCCSS-CC---SCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSEE---------SCCC-TTCCEEECCS
T ss_pred ccccc-cc---cccccccccccccccccccc------ccccccccccccccccccc---------cccc-chhccccccc
Confidence 87653 22 23456777888877765432 2234556666665543321 1110 0114556666
Q ss_pred CcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 368 NSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 368 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+.+.+. ...+++|++|++++|+++ .+|. .+++|+.|++++|+|+ .+|.. +++|++|++++|+++. +|
T Consensus 274 ~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~-lp 340 (353)
T d1jl5a_ 274 NEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FP 340 (353)
T ss_dssp SCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC
T ss_pred Cccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCC-CC
Confidence 666543 344678999999999998 5664 3578999999999998 56653 4679999999999874 45
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=9.1e-22 Score=198.79 Aligned_cols=111 Identities=20% Similarity=0.135 Sum_probs=74.3
Q ss_pred CcEEECCCCCCCCcc-cccccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCccccC--chhhc-CCC
Q 040238 1 LQFLYLRLNNFSGDL-LGSIGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRGTIK--LDVLL-TSW 72 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~-~~l 72 (549)
|+.||+++|++++.. .+.+..++++++|+|++|.++.. ++..+..+++|++|||++|.|+.... ....+ ...
T Consensus 4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~ 83 (460)
T d1z7xw1 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 83 (460)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCC
Confidence 578999999988653 34456788899999999988742 34567788899999999988852111 11012 233
Q ss_pred CCCCeEeccCCccceeeccCC---CcCCCCCCEEEccCCCCC
Q 040238 73 KNLEFLALSLNRLSVLTKATS---NTTSQKLKYIGLRSCNLT 111 (549)
Q Consensus 73 ~~L~~L~Ls~n~i~~~~~~~~---~~~~~~L~~L~l~~n~l~ 111 (549)
.+|++|++++|.++..+.... ...+++|++|++++|.++
T Consensus 84 ~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 84 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 578888888887765432211 115677888888888763
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=1.1e-17 Score=151.39 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=139.7
Q ss_pred ecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCC
Q 040238 201 LASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKL 280 (549)
Q Consensus 201 ~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L 280 (549)
+++.+.+.+.. .++++.+|++|++++|.++. ++ .+..+ ++|++|++++|.+++..+ +..++++
T Consensus 25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l-~~L~~L~ls~n~i~~~~~------------l~~l~~l 87 (227)
T d1h6ua2 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYL-NNLIGLELKDNQITDLAP------------LKNLTKI 87 (227)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGC-TTCCEEECCSSCCCCCGG------------GTTCCSC
T ss_pred HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcC-CCCcEeecCCceeecccc------------ccccccc
Confidence 34444444432 34566778888888887773 33 34443 378888888887765322 4667788
Q ss_pred cEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccccccccc
Q 040238 281 EFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360 (549)
Q Consensus 281 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l 360 (549)
+++++++|.++.. ..+.++++|+.++++++...+..+ +...+.+..+.++++.+....+ +.....+
T Consensus 88 ~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~---~~~~~~L----- 153 (227)
T d1h6ua2 88 TELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISP---LAGLTNL----- 153 (227)
T ss_dssp CEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GGGCTTC-----
T ss_pred ccccccccccccc--ccccccccccccccccccccccch----hccccchhhhhchhhhhchhhh---hcccccc-----
Confidence 8888888877643 346778888888888877655432 2456777788887777643322 4444444
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
+.|++++|.+.... .+.++++|++|++++|++++ ++ .++++++|++|++++|++++..| +.++++|+.|++++
T Consensus 154 ~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 154 QYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226 (227)
T ss_dssp CEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred ccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence 78888888776543 37888999999999999884 43 37888999999999999885433 78889999999874
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.8e-20 Score=187.71 Aligned_cols=394 Identities=19% Similarity=0.102 Sum_probs=222.9
Q ss_pred CCCCEEEccCCcCCccc-cccccCCCCCCEEeCCCCcCcccc--CchhhcCCCCCCCeEeccCCccceeeccCC----Cc
Q 040238 23 RSLEAIHIAKCNVSGQI-TSSLRNLSQLFFLDLAKNSYRGTI--KLDVLLTSWKNLEFLALSLNRLSVLTKATS----NT 95 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~ 95 (549)
.+|++||++.|++++.. .+.+..+++++.|+|++|.++... ....++..+++|++|||++|.|+..+.... ..
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 36899999999998642 455677899999999999887321 112236788999999999998764322111 11
Q ss_pred CCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCCCCCCccccc---ccCCCCcEEEccCCcCCCCCCccc
Q 040238 96 TSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLD---PNMQNLNALNISHNFLTGFDQHLV 167 (549)
Q Consensus 96 ~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~~l~~L~~L~L~~n~~~~~~~~~~ 167 (549)
...+|++|++++|.++. ++..+..+++|++|++++|.+.......+.. ........................
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 34579999999998843 3445677888888988888875322222210 011112222222222111100000
Q ss_pred c-ccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCc----Cchhhh-cCCCCCeEeCcCCcCCCcCC----c
Q 040238 168 V-LPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGE----IPSWIC-NLNILESLVLSHNNLSGLLP----Q 237 (549)
Q Consensus 168 ~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~-~l~~L~~L~Ls~n~l~~~~~----~ 237 (549)
. .... ...++.+.++++..... ....+. .-.....+++..+.+..... .
T Consensus 162 ~~~l~~---------------------~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (460)
T d1z7xw1 162 ASVLRA---------------------KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 220 (460)
T ss_dssp HHHHHH---------------------CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred cccccc---------------------ccccccccccccccccccccccccccccccccccccccccccccchhhhcccc
Confidence 0 0000 12233333333333211 111122 22345677777776542211 1
Q ss_pred chhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc----CcccCCCCCCCEEEccCcc
Q 040238 238 CLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF----PSWLGTLPNLNVLILRSNI 313 (549)
Q Consensus 238 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~ 313 (549)
.+.. .+.++.+++++|.+....... ...........++.+++++|.+.... ...+...+.++.+++++|.
T Consensus 221 ~l~~-~~~~~~l~~~~n~~~~~~~~~-----~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~ 294 (460)
T d1z7xw1 221 IVAS-KASLRELALGSNKLGDVGMAE-----LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 294 (460)
T ss_dssp HHHH-CTTCCEEECCSSBCHHHHHHH-----HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred cccc-cccccccchhhccccccccch-----hhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1222 236888888888654221000 01222345678889999998876432 2334567788999999888
Q ss_pred cccccCCCC---CccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCccc----Cchhhc-CCCCCC
Q 040238 314 FYGIIKEPR---TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV----IPASIA-NLKGLQ 385 (549)
Q Consensus 314 l~~~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~----~~~~~~-~l~~L~ 385 (549)
+.......+ .......|+.+++++|.+..... ..+..+.. ...++++|+|++|.+... ++..+. ..+.|+
T Consensus 295 i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~-~~l~~~~~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~ 372 (460)
T d1z7xw1 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC-SHFSSVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 372 (460)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-HHHHHHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred ccccccchhhccccccccccccccccccchhhhhh-hhcccccc-cccchhhhheeeecccCcccchhhhhhhcccCCCC
Confidence 754211110 01234578889999888754322 11221110 112348888888888653 223332 456788
Q ss_pred EEEccCCccccC----CCcccCCCCCCCEeeCCCCcccccCCcC----cc-CCCCCcEEecccCcCccc
Q 040238 386 VLNLQNNSLQGH----IPSCLGNLPNLESLDLSNNKFSGQIPQQ----LV-ELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 386 ~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~l~~N~l~~~ 445 (549)
+|+|++|+++.. +++.+..+++|++|+|++|+++...... +. +...|+.|++.+|.+...
T Consensus 373 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~ 441 (460)
T d1z7xw1 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441 (460)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred EEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence 899998888742 3455667788899999988887532222 22 334688888888887643
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.73 E-value=2.9e-18 Score=150.63 Aligned_cols=134 Identities=18% Similarity=0.192 Sum_probs=79.3
Q ss_pred CcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccc
Q 040238 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVN 359 (549)
Q Consensus 280 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~ 359 (549)
.++++.++++++ .+|..+. +++++|+|++|.+++. ++...|..+++|
T Consensus 10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~--------------------------~~~~~f~~l~~L---- 56 (192)
T d1w8aa_ 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRI--------------------------SSDGLFGRLPHL---- 56 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSB--------------------------CCSCSGGGCTTC----
T ss_pred CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCccc--------------------------ccccccCCCceE----
Confidence 346667776666 3443332 4566666666666443 333334444443
Q ss_pred cceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 360 TTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 360 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
+.|++++|.+.+..++.|..+++|++|++++|++.+..+++|.++++|++|+|++|+|++..|+.|..+++|++|++++
T Consensus 57 -~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 57 -VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp -CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred -eeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence 4444555555555556666666666666666666655566666666666666666666666666666666666666666
Q ss_pred CcCcccCC
Q 040238 440 NHLTGLIP 447 (549)
Q Consensus 440 N~l~~~~p 447 (549)
|++.+.++
T Consensus 136 N~~~~~~~ 143 (192)
T d1w8aa_ 136 NPFNCNCH 143 (192)
T ss_dssp CCBCCSGG
T ss_pred cccccccc
Confidence 66665544
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.8e-17 Score=150.35 Aligned_cols=220 Identities=16% Similarity=0.155 Sum_probs=112.6
Q ss_pred cEEEccCCcCCCCCCCC-CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCC-C
Q 040238 177 LTFDLSSNNLQGPLPVP-PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQG-N 254 (549)
Q Consensus 177 ~~L~L~~n~l~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~-n 254 (549)
+.++.++..++ .+|.. ++++++|++++|.+....+..|.++++|++|++++|.+.+.++...+...+.++++.+.. |
T Consensus 11 ~~i~c~~~~l~-~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp SEEEEESCSCS-SCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred CEEEEeCCCCC-CcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence 34444444444 22221 234455555555554444445666666666666666665444433333333555555432 3
Q ss_pred ccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCc-ccCCCCCCCEEEccCcccccccCCCCCccCCCCCcee
Q 040238 255 NFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS-WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRII 333 (549)
Q Consensus 255 ~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 333 (549)
.+....+. .+..+++|+++++++|++....+. .+..+..+..+..+++.+..+.
T Consensus 90 ~l~~~~~~----------~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~--------------- 144 (242)
T d1xwdc1 90 NLLYINPE----------AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--------------- 144 (242)
T ss_dssp TCCEECTT----------SEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC---------------
T ss_pred cccccccc----------cccccccccccccchhhhccccccccccccccccccccccccccccc---------------
Confidence 34332222 234455555555555555432211 1112233333333333333332
Q ss_pred eCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCC-EEEccCCccccCCCcccCCCCCCCEee
Q 040238 334 DLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQ-VLNLQNNSLQGHIPSCLGNLPNLESLD 412 (549)
Q Consensus 334 ~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~ 412 (549)
...|..+. ..+..|++++|++++..+..|.. ++++ .+++++|.++...++.|.++++|+.|+
T Consensus 145 ------------~~~~~~~~----~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~ 207 (242)
T d1xwdc1 145 ------------RNSFVGLS----FESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILD 207 (242)
T ss_dssp ------------TTSSTTSB----SSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEE
T ss_pred ------------cccccccc----ccceeeecccccccccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEE
Confidence 22222221 11255666666666555554443 4444 445677778755556688888888888
Q ss_pred CCCCcccccCCcCccCCCCCcEEeccc
Q 040238 413 LSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 413 l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
+++|+++...+..|.+++.|+.+++.+
T Consensus 208 Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 208 ISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp CTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred CCCCcCCccCHHHHcCCcccccCcCCC
Confidence 888888855556677777777777654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.6e-17 Score=149.58 Aligned_cols=202 Identities=15% Similarity=0.135 Sum_probs=125.7
Q ss_pred CeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCC-cCcccCC
Q 040238 222 ESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDT-FPSWLGT 300 (549)
Q Consensus 222 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~ 300 (549)
+.++.++..++ .+|..+. +++++|++++|+++...+.. |.++++|++|++++|.+... .+..|..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~----------f~~l~~L~~L~ls~n~~~~~i~~~~f~~ 76 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGA----------FSGFGDLEKIEISQNDVLEVIEADVFSN 76 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTT----------TTTCTTCCEEEEESCTTCCEECSSSEES
T ss_pred CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhH----------hhccchhhhhhhccccccceeecccccc
Confidence 34555555555 4554432 25666666666665433222 35566666666666665543 2345566
Q ss_pred CCCCCEEEccC-cccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 301 LPNLNVLILRS-NIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 301 l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
+++++++.+.. |.+....+..+ .++++|+.+++++|++....+...+..+..+ ..+...++.+....+..|.
T Consensus 77 l~~l~~l~~~~~n~l~~~~~~~~--~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l-----~~~~~~n~~l~~i~~~~~~ 149 (242)
T d1xwdc1 77 LPKLHEIRIEKANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-----LLDIQDNINIHTIERNSFV 149 (242)
T ss_dssp CTTCCEEEEECCTTCCEECTTSE--ECCTTCCEEEEESCCCCSCCCCTTTCBSSCE-----EEEEESCTTCCEECTTSST
T ss_pred ccccccccccccccccccccccc--cccccccccccchhhhccccccccccccccc-----ccccccccccccccccccc
Confidence 66666666543 44444443333 5666666666666665433222222223333 4555666677777777777
Q ss_pred CCC-CCCEEEccCCccccCCCcccCCCCCCCEe-eCCCCcccccCCcCccCCCCCcEEecccCcCccc
Q 040238 380 NLK-GLQVLNLQNNSLQGHIPSCLGNLPNLESL-DLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 380 ~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
+++ .++.|++++|+++...+..| ..++++++ ++++|+++...+..|.++++|++|++++|+++..
T Consensus 150 ~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l 216 (242)
T d1xwdc1 150 GLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 216 (242)
T ss_dssp TSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred cccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCcc
Confidence 765 79999999999995555554 44565555 5788899866666799999999999999999854
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.5e-16 Score=141.58 Aligned_cols=163 Identities=21% Similarity=0.304 Sum_probs=106.4
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
+|++|++++|.++... .+..+++|++|++++|++++.. .++.+++|++|++++|+++++. .+
T Consensus 47 ~L~~L~l~~~~i~~l~------------~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~----~l 108 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQ------------GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS----SL 108 (210)
T ss_dssp TCCEEECTTSCCCCCT------------TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG----GG
T ss_pred CccEEECcCCCCCCch------------hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc----cc
Confidence 4566666666554321 1345666666666666665432 2455666666666666665442 12
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
..+++|+.|++++|.+.. + ..+..++.+ +.+++++|.+++. ..+..+++|+++++++|++.+ ++ .+++
T Consensus 109 ~~l~~L~~L~l~~~~~~~-~--~~l~~l~~l-----~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~ 176 (210)
T d1h6ta2 109 KDLKKLKSLSLEHNGISD-I--NGLVHLPQL-----ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAG 176 (210)
T ss_dssp TTCTTCCEEECTTSCCCC-C--GGGGGCTTC-----CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTT
T ss_pred cccccccccccccccccc-c--ccccccccc-----ccccccccccccc--ccccccccccccccccccccc-cc-cccC
Confidence 456666666666665432 1 123444444 6777777777643 346778999999999999985 43 3888
Q ss_pred CCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 405 LPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
+++|++|++++|++++ +| .+.++++|++|++++
T Consensus 177 l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred CCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 9999999999999984 44 588999999999874
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.3e-16 Score=144.11 Aligned_cols=201 Identities=22% Similarity=0.256 Sum_probs=128.4
Q ss_pred ECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCc
Q 040238 5 YLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNR 84 (549)
Q Consensus 5 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~ 84 (549)
+++.+.+++.. .+..+.+|++|++.+|++.+. +.+.++++|++|++++|.+++..+ +..+++|+++++++|.
T Consensus 25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~----l~~l~~l~~l~~~~n~ 96 (227)
T d1h6ua2 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP 96 (227)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC
T ss_pred HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc----cccccccccccccccc
Confidence 45555665543 345677788888888887754 347778888888888887774333 6777888888888877
Q ss_pred cceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCC
Q 040238 85 LSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ 164 (549)
Q Consensus 85 i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 164 (549)
++.++... .+++|+.++++++....++ .+...+.++.+.++++.+.... .+. .+++|++|++++|.+....+
T Consensus 97 ~~~i~~l~---~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~--~~~--~~~~L~~L~l~~n~~~~~~~ 168 (227)
T d1h6ua2 97 LKNVSAIA---GLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNIS--PLA--GLTNLQYLSIGNAQVSDLTP 168 (227)
T ss_dssp CSCCGGGT---TCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--GGG--GCTTCCEEECCSSCCCCCGG
T ss_pred cccccccc---ccccccccccccccccccc-hhccccchhhhhchhhhhchhh--hhc--cccccccccccccccccchh
Confidence 66554332 4677788888777765543 3555667777777777665322 233 66777777777776654322
Q ss_pred ccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCC
Q 040238 165 HLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSD 244 (549)
Q Consensus 165 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 244 (549)
. ... ++|+.|++++|.++ + ++ .+..+++|++|++++|++++ ++. +..+ +
T Consensus 169 l---~~l--~~L~~L~Ls~n~l~---------------------~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l-~ 217 (227)
T d1h6ua2 169 L---ANL--SKLTTLKADDNKIS---------------------D-IS-PLASLPNLIEVHLKNNQISD-VSP-LANT-S 217 (227)
T ss_dssp G---TTC--TTCCEEECCSSCCC---------------------C-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTC-T
T ss_pred h---ccc--ccceecccCCCccC---------------------C-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccC-C
Confidence 1 111 22555555555443 3 22 37788888888888888874 332 4333 4
Q ss_pred CCCeeecC
Q 040238 245 ELSVLDLQ 252 (549)
Q Consensus 245 ~L~~L~L~ 252 (549)
+|++|+++
T Consensus 218 ~L~~L~ls 225 (227)
T d1h6ua2 218 NLFIVTLT 225 (227)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEee
Confidence 78888876
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.70 E-value=2.6e-17 Score=144.40 Aligned_cols=156 Identities=23% Similarity=0.292 Sum_probs=108.4
Q ss_pred CCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCC-CcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 246 LSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD-TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 246 L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
.+.++.++++++.+ |..+ .+++++|+|++|+++. ..+..|.++++|++|++++|.+....+..+
T Consensus 10 ~~~v~Cs~~~L~~i-----------P~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~-- 74 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEI-----------PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-- 74 (192)
T ss_dssp TTEEECTTSCCSSC-----------CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--
T ss_pred CCEEEEeCCCcCcc-----------CCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc--
Confidence 56899999998743 3333 2689999999999986 446678899999999999999988866655
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
..+++|++|++++|++. +..++.|.++++|++|+|++|+|++..+++|..
T Consensus 75 ~~~~~L~~L~Ls~N~l~------------------------------~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~ 124 (192)
T d1w8aa_ 75 EGASHIQELQLGENKIK------------------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp TTCTTCCEEECCSCCCC------------------------------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred ccccccceeeecccccc------------------------------ccCHHHHhCCCcccccccCCccccccCHHHhcC
Confidence 66777777777666654 445556677777777777777777666667777
Q ss_pred CCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 405 LPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+++|++|+|++|++....+. ..-...++.+.+..|.++|..|
T Consensus 125 l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~c~~p 166 (192)
T d1w8aa_ 125 LNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCBBCSS
T ss_pred Ccccccccccccccccccch-HHHhhhhhhhcccCCCeEeCCC
Confidence 77777777777776633221 1111234555666666666655
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=5.8e-16 Score=136.50 Aligned_cols=159 Identities=26% Similarity=0.351 Sum_probs=92.3
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
++++|++++|.++.. ..++.+++|++|++++|++++..+ ++++++|++|++++|.+....+ +
T Consensus 41 ~l~~L~l~~~~i~~l------------~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~----l 102 (199)
T d2omxa2 41 QVTTLQADRLGIKSI------------DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----L 102 (199)
T ss_dssp TCCEEECTTSCCCCC------------TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----G
T ss_pred CCCEEECCCCCCCCc------------cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc----c
Confidence 456666666655421 113456666666666666664332 5666666666666666544421 2
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
.+++.|+.|++++|...... .+..++.+ +.|++++|++... +.+..+++|++|++++|++++. + .+++
T Consensus 103 ~~l~~L~~L~l~~~~~~~~~---~~~~l~~L-----~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~ 170 (199)
T d2omxa2 103 ANLTNLTGLTLFNNQITDID---PLKNLTNL-----NRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL-K-PLAN 170 (199)
T ss_dssp TTCTTCSEEECCSSCCCCCG---GGTTCTTC-----SEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G-GGTT
T ss_pred cccccccccccccccccccc---ccchhhhh-----HHhhhhhhhhccc--ccccccccccccccccccccCC-c-cccC
Confidence 45666666666666543211 13333333 5555666655432 2466677777777777777643 2 3677
Q ss_pred CCCCCEeeCCCCcccccCCcCccCCCCCcEE
Q 040238 405 LPNLESLDLSNNKFSGQIPQQLVELTFLEFF 435 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 435 (549)
+++|++|++++|++++ ++ .+.++++|+.|
T Consensus 171 l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 171 LTTLERLDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred CCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence 7777777777777764 33 36667777654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=1.1e-15 Score=134.74 Aligned_cols=162 Identities=20% Similarity=0.270 Sum_probs=106.3
Q ss_pred CCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCcc
Q 040238 6 LRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRL 85 (549)
Q Consensus 6 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i 85 (549)
++.+.+++..+ ...++++++|++++|.+... +.+..+++|++|++++|++++..+ +.++++|++|++++|.+
T Consensus 25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~----l~~l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQI 96 (199)
T ss_dssp TTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCC
T ss_pred hCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc----ccCCccccccccccccc
Confidence 44555554432 23567777888887777654 346677778888888877764322 56777788888887766
Q ss_pred ceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCc
Q 040238 86 SVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQH 165 (549)
Q Consensus 86 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 165 (549)
..++.. ..+++|++|++++|....++ .+..+++|+.|++++|++.. ++ .+. .+++|+.|++.+|++++..+
T Consensus 97 ~~~~~l---~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~--~~~~L~~L~l~~n~l~~l~~- 167 (199)
T d2omxa2 97 ADITPL---ANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISD-IS-ALS--GLTSLQQLNFSSNQVTDLKP- 167 (199)
T ss_dssp CCCGGG---TTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC-CG-GGT--TCTTCSEEECCSSCCCCCGG-
T ss_pred cccccc---cccccccccccccccccccc-ccchhhhhHHhhhhhhhhcc-cc-ccc--ccccccccccccccccCCcc-
Confidence 655432 25677788888777765543 46677778888888777752 22 344 67778888888777766543
Q ss_pred cccccCCCCCccEEEccCCcCCC
Q 040238 166 LVVLPANKGDLLTFDLSSNNLQG 188 (549)
Q Consensus 166 ~~~~~~~~~~L~~L~L~~n~l~~ 188 (549)
.... ++|++|++++|++++
T Consensus 168 --l~~l--~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 168 --LANL--TTLERLDISSNKVSD 186 (199)
T ss_dssp --GTTC--TTCCEEECCSSCCCC
T ss_pred --ccCC--CCCCEEECCCCCCCC
Confidence 1222 337888888877765
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=1e-15 Score=136.14 Aligned_cols=177 Identities=19% Similarity=0.204 Sum_probs=106.9
Q ss_pred CCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCcc
Q 040238 6 LRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRL 85 (549)
Q Consensus 6 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i 85 (549)
+..+.+++.++. ..+.+|++|++++|.+.+.. .+..+++|++|++++|.+++.. . +..+++|++|++++|++
T Consensus 31 l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~--~~~l~~L~~L~l~~n~i 102 (210)
T d1h6ta2 31 LKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--P--LANLKNLGWLFLDENKV 102 (210)
T ss_dssp TTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCC
T ss_pred hCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--c--cccCccccccccccccc
Confidence 334444443332 23556777777777766542 3666777777777777776422 2 46677777777777766
Q ss_pred ceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCc
Q 040238 86 SVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQH 165 (549)
Q Consensus 86 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 165 (549)
+.++.. ..+++|+.|++++|.+..++ .+..+++++.+++++|.+++. ..+. .+++|+.+++++|++.++.+
T Consensus 103 ~~l~~l---~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~--~~~~--~l~~L~~l~l~~n~l~~i~~- 173 (210)
T d1h6ta2 103 KDLSSL---KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISDIVP- 173 (210)
T ss_dssp CCGGGG---TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCCCGG-
T ss_pred cccccc---cccccccccccccccccccc-ccccccccccccccccccccc--cccc--cccccccccccccccccccc-
Confidence 655432 24667777777777766554 466667777777777776532 2333 66777777777777665432
Q ss_pred cccccCCCCCccEEEccCCcCCCCCC-CCCCCcceeecc
Q 040238 166 LVVLPANKGDLLTFDLSSNNLQGPLP-VPPPGTIHYLAS 203 (549)
Q Consensus 166 ~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~L~~L~l~ 203 (549)
.... ++|++|++++|.+++.-+ ..+++|++|+++
T Consensus 174 --l~~l--~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 174 --LAGL--TKLQNLYLSKNHISDLRALAGLKNLDVLELF 208 (210)
T ss_dssp --GTTC--TTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred --ccCC--CCCCEEECCCCCCCCChhhcCCCCCCEEEcc
Confidence 1122 337777777777664321 226677777765
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.3e-15 Score=142.08 Aligned_cols=203 Identities=19% Similarity=0.152 Sum_probs=131.9
Q ss_pred CCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC
Q 040238 221 LESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT 300 (549)
Q Consensus 221 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 300 (549)
...+.++...+....... .. ..+|++|+++++.+++.. +...+..+++|++|+++++.+++..+..++.
T Consensus 25 ~~~lrl~~~~~~~~~~~~-~~-~~~L~~LdLs~~~i~~~~---------l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~ 93 (284)
T d2astb2 25 VIAFRCPRSFMDQPLAEH-FS-PFRVQHMDLSNSVIEVST---------LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93 (284)
T ss_dssp CSEEECTTCEECSCCCSC-CC-CBCCCEEECTTCEECHHH---------HHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ceEeeccccccccchhhh-cc-CCCCCEEECCCCccCHHH---------HHHHHHhCCCcccccccccCCCcHHHHHHhc
Confidence 455666655444222221 22 226888888888775432 2233567888889999888887777777888
Q ss_pred CCCCCEEEccCcc-cccccCCCCCccCCCCCceeeCCCCc-cccccChhhhhc-cccccccccceEEccCC--cCccc-C
Q 040238 301 LPNLNVLILRSNI-FYGIIKEPRTDCGFSKLRIIDLSNNI-FIGTLPLKSFLC-WNAMKIVNTTGIILSNN--SFDSV-I 374 (549)
Q Consensus 301 l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~-l~~l~~~~l~~L~l~~n--~l~~~-~ 374 (549)
+++|++|++++|. ++... ......++++|++|++++|. +++......+.. .+.+ +.|+++++ .++.. +
T Consensus 94 ~~~L~~L~Ls~c~~itd~~-l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L-----~~L~l~~~~~~i~~~~l 167 (284)
T d2astb2 94 NSNLVRLNLSGCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-----TQLNLSGYRKNLQKSDL 167 (284)
T ss_dssp CTTCSEEECTTCBSCCHHH-HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-----CEEECCSCGGGSCHHHH
T ss_pred CCCCcCccccccccccccc-cchhhHHHHhccccccccccccccccchhhhccccccc-----chhhhcccccccccccc
Confidence 8889999988864 33211 01112467888999998864 322111111211 2334 88888865 34332 3
Q ss_pred chhhcCCCCCCEEEccCCc-cccCCCcccCCCCCCCEeeCCCC-cccccCCcCccCCCCCcEEecccC
Q 040238 375 PASIANLKGLQVLNLQNNS-LQGHIPSCLGNLPNLESLDLSNN-KFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 375 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
...+.++++|++|++++|. +++.....+..+++|++|++++| .+++.....+.++++|+.|++++|
T Consensus 168 ~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 3344678899999999864 66666677888899999999996 577666667888899999999887
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.7e-15 Score=125.90 Aligned_cols=130 Identities=14% Similarity=0.171 Sum_probs=106.7
Q ss_pred ccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcC
Q 040238 17 GSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTT 96 (549)
Q Consensus 17 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 96 (549)
..|.++.++|+|+|++|+|+.+ +..+..+++|++|++++|.++ .++ . +..+++|++|++++|.++.++...+. .
T Consensus 12 ~~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~--~~~l~~L~~L~ls~N~i~~l~~~~~~-~ 85 (162)
T d1a9na_ 12 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-G--FPLLRRLKTLLVNNNRICRIGEGLDQ-A 85 (162)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-C--CCCCSSCCEEECCSSCCCEECSCHHH-H
T ss_pred HhccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC-C--cccCcchhhhhcccccccCCCccccc-c
Confidence 3477888999999999999866 566788999999999999998 343 3 78899999999999998887654322 5
Q ss_pred CCCCCEEEccCCCCCCCCh--hhcCCCCccEEEeecCcCCCCCCc----ccccccCCCCcEEEcc
Q 040238 97 SQKLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVPK----WLLDPNMQNLNALNIS 155 (549)
Q Consensus 97 ~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~l~~L~~L~L~ 155 (549)
+++|++|++++|.++.+++ .+..+++|++|++++|+++ ..|. .+. .+++|+.||-.
T Consensus 86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~--~lp~L~~LD~~ 147 (162)
T d1a9na_ 86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIY--KVPQVRVLDFQ 147 (162)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHH--HCTTCSEETTE
T ss_pred ccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHH--HCCCcCeeCCC
Confidence 8899999999999988874 6788999999999999986 3343 355 78999998743
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.3e-14 Score=122.55 Aligned_cols=114 Identities=18% Similarity=0.083 Sum_probs=75.1
Q ss_pred cccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChh-hcCC
Q 040238 42 SLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNF-LQNQ 120 (549)
Q Consensus 42 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l 120 (549)
.|.+...+++|+|++|+|+ .++.. +..+++|++|++++|.|+.++.. ..+++|++|++++|.++.++.. +..+
T Consensus 13 ~~~n~~~lr~L~L~~n~I~-~i~~~--~~~l~~L~~L~Ls~N~i~~l~~~---~~l~~L~~L~ls~N~i~~l~~~~~~~l 86 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIP-VIENL--GATLDQFDAIDFSDNEIRKLDGF---PLLRRLKTLLVNNNRICRIGEGLDQAL 86 (162)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCG--GGGTTCCSEEECCSSCCCEECCC---CCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred hccCcCcCcEEECCCCCCC-ccCcc--ccccccCCEEECCCCCCCccCCc---ccCcchhhhhcccccccCCCccccccc
Confidence 3556667777777777776 33422 56677777777777777766432 2467777777777777776653 4557
Q ss_pred CCccEEEeecCcCCCCCC-cccccccCCCCcEEEccCCcCCCCC
Q 040238 121 YHLLVLDLSDNRIQGKVP-KWLLDPNMQNLNALNISHNFLTGFD 163 (549)
Q Consensus 121 ~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~ 163 (549)
++|++|++++|+++.... ..+. .+++|++|++++|.++..+
T Consensus 87 ~~L~~L~L~~N~i~~~~~l~~l~--~l~~L~~L~l~~N~i~~~~ 128 (162)
T d1a9na_ 87 PDLTELILTNNSLVELGDLDPLA--SLKSLTYLCILRNPVTNKK 128 (162)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGG--GCTTCCEEECCSSGGGGST
T ss_pred cccccceeccccccccccccccc--cccccchhhcCCCcccccc
Confidence 777777777777763211 2444 6777777777777766554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.3e-15 Score=142.14 Aligned_cols=228 Identities=17% Similarity=0.105 Sum_probs=131.0
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCcc-ccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQ-ITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
.+.++...+..... ......+|++|++++|.+... ....+.++++|++|+++++.+.+..... +..+++|++|+++
T Consensus 27 ~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~--l~~~~~L~~L~Ls 103 (284)
T d2astb2 27 AFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT--LAKNSNLVRLNLS 103 (284)
T ss_dssp EEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH--HTTCTTCSEEECT
T ss_pred Eeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH--HhcCCCCcCcccc
Confidence 34444444432222 233456788888888877643 3455677888888888888877555555 6778888888888
Q ss_pred CC-ccceeeccCCCcCCCCCCEEEccCCC-CC--CCChhhc-CCCCccEEEeecCc--CCCCCCcccccccCCCCcEEEc
Q 040238 82 LN-RLSVLTKATSNTTSQKLKYIGLRSCN-LT--KFPNFLQ-NQYHLLVLDLSDNR--IQGKVPKWLLDPNMQNLNALNI 154 (549)
Q Consensus 82 ~n-~i~~~~~~~~~~~~~~L~~L~l~~n~-l~--~l~~~l~-~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~L 154 (549)
+| .++..+.......+++|++|++++|. ++ .+...+. ..++|+.|+++++. ++......+. ..+++|++|++
T Consensus 104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~-~~~~~L~~L~L 182 (284)
T d2astb2 104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-RRCPNLVHLDL 182 (284)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-HHCTTCSEEEC
T ss_pred ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccc-ccccccccccc
Confidence 86 33322211112257788888888863 32 1222232 34678888888653 3322122221 16788888888
Q ss_pred cCCc-CCCCCCccccccCCCCCccEEEccCC-cCCCCCCC---CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCC
Q 040238 155 SHNF-LTGFDQHLVVLPANKGDLLTFDLSSN-NLQGPLPV---PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHN 229 (549)
Q Consensus 155 ~~n~-~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n 229 (549)
++|. +++.... ..... ++|++|++++| .+++.... .+++|++|++.++--.+.+......+|+|+ +..+
T Consensus 183 ~~~~~itd~~~~-~l~~~--~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~ 256 (284)
T d2astb2 183 SDSVMLKNDCFQ-EFFQL--NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCS 256 (284)
T ss_dssp TTCTTCCGGGGG-GGGGC--TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCC
T ss_pred ccccCCCchhhh-hhccc--CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCc
Confidence 8764 3322222 22223 34888888885 45432221 267888888888732233333334566654 5666
Q ss_pred cCCCcCCcchh
Q 040238 230 NLSGLLPQCLG 240 (549)
Q Consensus 230 ~l~~~~~~~~~ 240 (549)
.+++..+..++
T Consensus 257 ~ls~~~~~~~~ 267 (284)
T d2astb2 257 HFTTIARPTIG 267 (284)
T ss_dssp CSCCTTCSSCS
T ss_pred cCCCCCCCccC
Confidence 67655554443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=4e-14 Score=113.49 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=72.4
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
|+|||++|+++.. + .+.++++|++|++++|.+.. +|+.|..+++|++|++++|.++. ++ . +..+++|++|+++
T Consensus 1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~--~~~l~~L~~L~l~ 73 (124)
T d1dcea3 1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-G--VANLPRLQELLLC 73 (124)
T ss_dssp SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-G--GTTCSSCCEEECC
T ss_pred CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-c--cccccccCeEECC
Confidence 6788888888733 3 37788888888888888875 45567888888888888888873 33 3 6777888888888
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNL 110 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l 110 (549)
+|+|+.++.......+++|++|++++|.+
T Consensus 74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i 102 (124)
T d1dcea3 74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102 (124)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCccCCCCCchhhcCCCCCCEEECCCCcC
Confidence 87776665433333556666666666655
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=1.1e-13 Score=110.96 Aligned_cols=118 Identities=21% Similarity=0.259 Sum_probs=90.7
Q ss_pred CEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEc
Q 040238 26 EAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGL 105 (549)
Q Consensus 26 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l 105 (549)
|+|+|++|+++... .+.++++|++|++++|.++ .+|.. +..+++|++|++++|.|+.++.. ..+++|++|++
T Consensus 1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~-~lp~~--~~~l~~L~~L~l~~N~i~~l~~~---~~l~~L~~L~l 72 (124)
T d1dcea3 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPA--LAALRCLEVLQASDNALENVDGV---ANLPRLQELLL 72 (124)
T ss_dssp SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCCGG--GGGCTTCCEEECCSSCCCCCGGG---TTCSSCCEEEC
T ss_pred CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccC-cchhh--hhhhhcccccccccccccccCcc---ccccccCeEEC
Confidence 68999999998553 4889999999999999998 66766 78899999999999988877542 26788999999
Q ss_pred cCCCCCCCCh--hhcCCCCccEEEeecCcCCCCC--CcccccccCCCCcEE
Q 040238 106 RSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKV--PKWLLDPNMQNLNAL 152 (549)
Q Consensus 106 ~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L 152 (549)
++|+++.++. .+..+++|++|++++|+++... +..+. ..+|+|+.+
T Consensus 73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~-~~lp~L~~L 122 (124)
T d1dcea3 73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA-EMLPSVSSI 122 (124)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH-HHCTTCSEE
T ss_pred CCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHH-HHCcCcceE
Confidence 9999877763 5778888999999988876321 22221 156777765
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.47 E-value=1.1e-15 Score=147.26 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=98.7
Q ss_pred cccccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCcccc---C-----chhhcCCCCCCCeEeccCC
Q 040238 16 LGSIGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRGTI---K-----LDVLLTSWKNLEFLALSLN 83 (549)
Q Consensus 16 ~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~---~-----~~~~~~~l~~L~~L~Ls~n 83 (549)
...+.....|++|+|++|.+... +.+.+...++|+.++++++...... + ....+..+++|+.|++++|
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 44566788999999999988643 3355677899999999887543111 1 1113567889999999999
Q ss_pred ccceeeccCCC---cCCCCCCEEEccCCCCCC-----CCh---------hhcCCCCccEEEeecCcCCCCCCccccc--c
Q 040238 84 RLSVLTKATSN---TTSQKLKYIGLRSCNLTK-----FPN---------FLQNQYHLLVLDLSDNRIQGKVPKWLLD--P 144 (549)
Q Consensus 84 ~i~~~~~~~~~---~~~~~L~~L~l~~n~l~~-----l~~---------~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~ 144 (549)
.++..+..... ..+++|++|++++|.++. +.. .....+.|+.+++++|.++......+.. .
T Consensus 104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~ 183 (344)
T d2ca6a1 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183 (344)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence 76654322211 156889999999998721 111 1235678999999999876433222210 1
Q ss_pred cCCCCcEEEccCCcCCC
Q 040238 145 NMQNLNALNISHNFLTG 161 (549)
Q Consensus 145 ~l~~L~~L~L~~n~~~~ 161 (549)
..+.|+.|++++|.+..
T Consensus 184 ~~~~L~~L~L~~n~i~~ 200 (344)
T d2ca6a1 184 SHRLLHTVKMVQNGIRP 200 (344)
T ss_dssp HCTTCCEEECCSSCCCH
T ss_pred hhhhhcccccccccccc
Confidence 57899999999998764
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.46 E-value=5.9e-15 Score=142.14 Aligned_cols=38 Identities=37% Similarity=0.627 Sum_probs=20.0
Q ss_pred CCCCEEEccCCccccC----CCcccC-CCCCCCEeeCCCCccc
Q 040238 382 KGLQVLNLQNNSLQGH----IPSCLG-NLPNLESLDLSNNKFS 419 (549)
Q Consensus 382 ~~L~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l~ 419 (549)
+.|++|++++|.+... +...+. ++++|+.|++++|++.
T Consensus 273 ~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 4466666666655421 122221 4556666666666664
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.33 E-value=9.2e-15 Score=127.99 Aligned_cols=130 Identities=20% Similarity=0.239 Sum_probs=85.0
Q ss_pred cccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCC
Q 040238 14 DLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATS 93 (549)
Q Consensus 14 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 93 (549)
.++.++..+++|++|+|++|+++.+ +.|.++++|++|++++|.++ .++.. +..+++|++|++++|.++.++..
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~--~~~~~~L~~L~l~~N~i~~l~~~-- 111 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENL--DAVADTLEELWISYNQIASLSGI-- 111 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSH--HHHHHHCCEEECSEEECCCHHHH--
T ss_pred hhhhHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-ccccc--ccccccccccccccccccccccc--
Confidence 3455677777888888887777754 24777777888888877776 33322 34456777788877777665332
Q ss_pred CcCCCCCCEEEccCCCCCCCCh--hhcCCCCccEEEeecCcCCCCCCcc----------cccccCCCCcEEE
Q 040238 94 NTTSQKLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVPKW----------LLDPNMQNLNALN 153 (549)
Q Consensus 94 ~~~~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~~~~----------~~~~~l~~L~~L~ 153 (549)
..+++|++|++++|.++.++. .+..+++|+.|++++|++....+.. +. .+|+|+.||
T Consensus 112 -~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~--~lp~L~~LD 180 (198)
T d1m9la_ 112 -EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK--RLPNLKKLD 180 (198)
T ss_dssp -HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH--HCSSCCEES
T ss_pred -cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH--HCCCcCEeC
Confidence 256677777777777776653 5677777777777777654322221 23 566777665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=5.1e-12 Score=105.53 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=70.6
Q ss_pred ceEEccCC-cCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 361 TGIILSNN-SFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 361 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
++|++++| .++.+.++.|.++++|+.|++++|+|+...+++|..+++|+.|+|++|+++...+..|.. .+|+.|+|++
T Consensus 34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~ 112 (156)
T d2ifga3 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSG 112 (156)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCS
T ss_pred CeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccccCC
Confidence 66677655 477777788999999999999999999877889999999999999999999544445544 4799999999
Q ss_pred CcCcccCC
Q 040238 440 NHLTGLIP 447 (549)
Q Consensus 440 N~l~~~~p 447 (549)
|+|.|.+.
T Consensus 113 Np~~C~C~ 120 (156)
T d2ifga3 113 NPLHCSCA 120 (156)
T ss_dssp SCCCCCGG
T ss_pred CcccCCch
Confidence 99987763
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.5e-12 Score=105.87 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=87.6
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCC-ccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNN-SLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
+.++.+++++.. .|..+..+++|++|++++| .++...+++|.++++|+.|++++|+|+...+..|..+++|++|+|++
T Consensus 11 ~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 11 SGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 445566666653 4566788999999999876 58877778899999999999999999988889999999999999999
Q ss_pred CcCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 440 NHLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 440 N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
|+++...+.......+..+.+.+||+.|++.
T Consensus 90 N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~ 120 (156)
T d2ifga3 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (156)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCCcccChhhhccccccccccCCCcccCCch
Confidence 9999665544444456677788888877653
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.23 E-value=3e-13 Score=118.16 Aligned_cols=127 Identities=25% Similarity=0.306 Sum_probs=74.0
Q ss_pred ccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCch
Q 040238 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPA 376 (549)
Q Consensus 297 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~ 376 (549)
.+..+++|++|++++|.+..+. . +.++++|+.|++++|.+. .+| ..+..++.+ +.|++++|.++.. +
T Consensus 43 sl~~L~~L~~L~Ls~n~I~~i~--~--l~~l~~L~~L~Ls~N~i~-~i~-~~~~~~~~L-----~~L~l~~N~i~~l--~ 109 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNNIEKIS--S--LSGMENLRILSLGRNLIK-KIE-NLDAVADTL-----EELWISYNQIASL--S 109 (198)
T ss_dssp HHHHTTTCCEEECSEEEESCCC--C--HHHHTTCCEEECCEEEEC-SCS-SHHHHHHHC-----CEEECSEEECCCH--H
T ss_pred HHhcccccceeECcccCCCCcc--c--ccCCccccChhhcccccc-ccc-ccccccccc-----ccccccccccccc--c
Confidence 3444444555555555444331 1 234455555555555443 222 112223333 6667777776643 3
Q ss_pred hhcCCCCCCEEEccCCccccCCC-cccCCCCCCCEeeCCCCcccccCCcC----------ccCCCCCcEEe
Q 040238 377 SIANLKGLQVLNLQNNSLQGHIP-SCLGNLPNLESLDLSNNKFSGQIPQQ----------LVELTFLEFFN 436 (549)
Q Consensus 377 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~ 436 (549)
.+..+++|++|++++|++++... ..+..+++|+.|++++|++....+.. +..+++|+.||
T Consensus 110 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 46777888888888888874321 45788888888888888887554432 45678888876
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=5.5e-09 Score=87.36 Aligned_cols=121 Identities=20% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCc-CCCCCCE
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT-TSQKLKY 102 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~~~~L~~ 102 (549)
..+.|++++.... ..+..+..+..++..++... ..+. ++..+++|++|++++|+|+.+....... .+++|+.
T Consensus 23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~--~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~ 95 (162)
T d1koha1 23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRI--IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI 95 (162)
T ss_dssp SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHH--HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCC
T ss_pred hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHH--HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccc
Confidence 3455666554322 12333444444444333322 2222 2456778888888888777766543322 5778888
Q ss_pred EEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcc-------cccccCCCCcEEE
Q 040238 103 IGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKW-------LLDPNMQNLNALN 153 (549)
Q Consensus 103 L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~-------~~~~~l~~L~~L~ 153 (549)
|++++|.++.+++ .......|+.|++++|+++...... +. .+|+|+.||
T Consensus 96 L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~--~~P~L~~LD 152 (162)
T d1koha1 96 LNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE--RFPKLLRLD 152 (162)
T ss_dssp CCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT--TSTTCCEET
T ss_pred cccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH--HCCCCCEEC
Confidence 8888888877765 3334456788888888876544321 23 567777775
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=7.4e-09 Score=86.51 Aligned_cols=119 Identities=18% Similarity=0.111 Sum_probs=81.6
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
.||+++.... +.+..+..+..+....+... ..+..+..+++|++|++++|+|+...+....+..+++|+.|++++
T Consensus 26 ~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~ 100 (162)
T d1koha1 26 ALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 100 (162)
T ss_dssp CBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred eeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc
Confidence 4566554432 12344444555555544333 344556789999999999999985544333467899999999999
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCCCCCC--------hhhcCCCCccEEE
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP--------NFLQNQYHLLVLD 127 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~--------~~l~~l~~L~~L~ 127 (549)
|.|+.++..... ....|++|++++|.+.... ..+..+++|+.||
T Consensus 101 N~i~~l~~l~~l-~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 101 NELKSERELDKI-KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp SCCCCGGGHHHH-TTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred Cccccchhhhhh-hccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 999988775433 4557999999999984332 1256789999886
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.83 E-value=4.7e-06 Score=69.32 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=51.1
Q ss_pred CCCCCCEEEccCC-cCCcc----ccccccCCCCCCEEeCCCCcCccc--cCchhhcCCCCCCCeEeccCCccceeeccCC
Q 040238 21 NLRSLEAIHIAKC-NVSGQ----ITSSLRNLSQLFFLDLAKNSYRGT--IKLDVLLTSWKNLEFLALSLNRLSVLTKATS 93 (549)
Q Consensus 21 ~l~~L~~L~Ls~n-~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 93 (549)
+.++|++|+|+++ .+... +...+...++|++|++++|.+... ......+...+.|++|++++|.|+..+....
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 4577778888764 35422 234456667777777777777532 2222234556677777777776665443322
Q ss_pred Cc---CCCCCCEEEccCCCC
Q 040238 94 NT---TSQKLKYIGLRSCNL 110 (549)
Q Consensus 94 ~~---~~~~L~~L~l~~n~l 110 (549)
.. ..++|++|++++|.+
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSS
T ss_pred HHHHHhCCcCCEEECCCCcC
Confidence 11 344566666665544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.82 E-value=4.8e-06 Score=69.28 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=75.8
Q ss_pred CcEEECCCC-CCCCc----ccccccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCcccc--Cchhhc
Q 040238 1 LQFLYLRLN-NFSGD----LLGSIGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRGTI--KLDVLL 69 (549)
Q Consensus 1 L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~ 69 (549)
|+.|+|+++ .++.. +...+...++|++|+|++|.+... +.+.+...+.|++|++++|.+...- .....+
T Consensus 17 L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL 96 (167)
T d1pgva_ 17 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 96 (167)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred CcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHH
Confidence 689999985 57544 345677889999999999998743 3345667889999999999997432 222247
Q ss_pred CCCCCCCeEeccCCccceeeccCCC------cCCCCCCEEEccCC
Q 040238 70 TSWKNLEFLALSLNRLSVLTKATSN------TTSQKLKYIGLRSC 108 (549)
Q Consensus 70 ~~l~~L~~L~Ls~n~i~~~~~~~~~------~~~~~L~~L~l~~n 108 (549)
...+.|++|++++|.+..++..... ...++|++|+++.+
T Consensus 97 ~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 97 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 7788999999999976655432111 03456666666544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.29 E-value=9e-06 Score=67.55 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=64.4
Q ss_pred ccccCCCCCCEEEccC-CcCCcc----ccccccCCCCCCEEeCCCCcCccccC--chhhcCCCCCCCeEeccCCccceee
Q 040238 17 GSIGNLRSLEAIHIAK-CNVSGQ----ITSSLRNLSQLFFLDLAKNSYRGTIK--LDVLLTSWKNLEFLALSLNRLSVLT 89 (549)
Q Consensus 17 ~~~~~l~~L~~L~Ls~-n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~ 89 (549)
....+.+.|++|+|++ +.++.. +..++...++|++|++++|.+..... ....+...+.++.+++++|.++..+
T Consensus 11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g 90 (166)
T d1io0a_ 11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 90 (166)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence 3345668888888887 445422 33455677888888888887753221 1223556677888888877665443
Q ss_pred ccCCC---cCCCCCCEEEcc--CCCCCC-----CChhhcCCCCccEEEeecC
Q 040238 90 KATSN---TTSQKLKYIGLR--SCNLTK-----FPNFLQNQYHLLVLDLSDN 131 (549)
Q Consensus 90 ~~~~~---~~~~~L~~L~l~--~n~l~~-----l~~~l~~l~~L~~L~l~~n 131 (549)
..... ...++|+.++++ +|.++. +...+...+.|+.|+++.+
T Consensus 91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 32211 144556654443 334421 2333444555666655544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.00 E-value=7.3e-05 Score=61.80 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=18.8
Q ss_pred hcCCCCCCEEEcc--CCcccc----CCCcccCCCCCCCEeeCCCCc
Q 040238 378 IANLKGLQVLNLQ--NNSLQG----HIPSCLGNLPNLESLDLSNNK 417 (549)
Q Consensus 378 ~~~l~~L~~L~l~--~n~l~~----~~~~~~~~l~~L~~L~l~~n~ 417 (549)
+...++|+.++|+ +|.+.. .+.+.+...+.|+.|+++.+.
T Consensus 98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 3444555544332 344432 122334455666666665554
|