Citrus Sinensis ID: 040245

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
LANPWWTSQVGLPGMDPAAAANSSILNKRDQHQHHHHELSINDTNEEEDRDTADEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGSTGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEVTGTQGQIQSTGAATNNNNSPPQIGSSGQPPSAGLPDPSSLTYNLPPNLIPNGGQLHEAYAWAHARPPYQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEEcccccHHHHHHHHHHHccccEEEEccccEEEEEEEccccccccEEEccccccEEEEEEcccccEEccEEccEEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEEEEEEEEEEEccccEEEEccEHHHHHccccEEEEEEEccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
lanpwwtsqvglpgmdpaaaanssilnkrdqhqhhhhelsindtneeedrdtadepregavevgtrrprgrppgsknkpkppifvtrdspnslrSHVMEVAGGADVAESVALFARRRQRGVCvlsgsgsvanvtlrqpaapgavVALHGSTGLTVYlaggqgqvvgGSVVGQLVAAGPVMVIAATFANatyerlpleddeevtgtqgqiqstgaatnnnnsppqigssgqppsaglpdpssltynlppnlipnggqlHEAYAwaharppyq
Flexible Loop (DISEMBL)
LANPWWTSQVGLPGMDPAAAANSSILNKRDQHQHHHhelsindtneeedrdtadepregavevgtrrprgrppgsknkpkppifvtrdspnsLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGSTGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEVTGTQGQIQSTGAATNNNNSPPQIGSSGQPPSAGLPDPSSLTYNLPPNLIPNGGQLHEAYAWAHARPPYQ
Low Complexity Region (SEG)
LANPWWTSQVGLPGMDPAAAANSSILNKRDQHQHHHHELSINDTNEEEDRDTADEPREGAVEVgtrrprgrppgsknkpkppIFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGSTGLTVYLaggqgqvvggsvvgqlvaagPVMVIAATFANATYERLPLEDDEEVTGTQGQIQSTGAATNNNNsppqigssgqppsAGLPDPSSLTYNLPPNLIPNGGQLHEAYAWAHARPPYQ
Disordered region (IsUnstruct)
**************************************************************************************************EVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGSTGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERL************************************************************GQLHEAYAWA*******
Disordered Region (DISOPRED)
**NPWWT*********************************************************************************SPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPA******ALHGSTGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFA******************************************************************************A*****
Disordered Region (DISEMBL)
LANPWWTSQVGLPGMDPAAAANSSILN**************************************************KPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGSTGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLED************STGAATNNNNSP***************DPSSLTYNLPPNLIPNGGQLHEAYAWAHARPPYQ
Disordered Region (DISPRO)
*****************************************************************************KPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGSTGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLP*****************************************PDPSSLTYNLPPNLIPNGGQLHEAYAWAHARPPY*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LANPWWTSQVGLPGMDPAAAANSSILNKRDQHQHHHHELSINDTNEEEDRDTADEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGSTGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEVTGTQGQIQSTGAATNNNNSPPQIGSSGQPPSAGLPDPSSLTYNLPPNLIPNGGQLHEAYAWAHARPPYQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.571	0.498	0.486	2e-32

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/191 (48%), Positives = 124/191 (64%), Gaps = 36/191 (18%)

Query: 42  NDTNEEEDRDTADEPREG--------AVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSL 93
           +D + E D    D  ++G        +     +RPRGRPPGSKNK KPPI VTRDSPN+L
Sbjct: 54  SDDSRESDHSNKDHHQQGRPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPIIVTRDSPNAL 113

Query: 94  RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPGA---------- 143
           RSHV+EV+ GAD+ ESV+ +ARRR RGV VL G+G+V+NVTLRQP  PG           
Sbjct: 114 RSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGV 173

Query: 144 --------VVALHGST----------GLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAAT 185
                   +++L G+           GL+++LAGGQGQVVGGSVV  L+A+ PV+++AA+
Sbjct: 174 VTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAAS 233

Query: 186 FANATYERLPL 196
           F+NA +ERLP+
Sbjct: 234 FSNAVFERLPI 244

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
255576858	301	DNA binding protein, putative [Ricinus c	0.944	0.850	0.714	1e-92
356574748	324	PREDICTED: putative DNA-binding protein	0.944	0.790	0.637	8e-85
167600640	289	putative protein [Coffea canephora] gi|3	0.948	0.889	0.612	1e-82
324388027	289	DNA-binding protein [Coffea arabica]	0.948	0.889	0.609	4e-82
296087883	275	unnamed protein product [Vitis vinifera]	0.922	0.909	0.596	3e-79
225463966	291	PREDICTED: putative DNA-binding protein	0.977	0.910	0.611	5e-79
356533801	338	PREDICTED: putative DNA-binding protein	0.952	0.763	0.642	7e-77
356536653	350	PREDICTED: putative DNA-binding protein	0.974	0.754	0.669	2e-76
225432991	260	PREDICTED: putative DNA-binding protein	0.870	0.907	0.682	5e-76
147812096	259	hypothetical protein VITISV_016751 [Viti	0.789	0.826	0.679	2e-75

>gi|255576858|ref|XP_002529315.1| DNA binding protein, putative [Ricinus communis] gi|223531239|gb|EEF33084.1| DNA binding protein, putative [Ricinus communis]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 213/298 (71%), Positives = 228/298 (76%), Gaps = 42/298 (14%)

Query: 1   LANPWWTSQVGLPGMDPAAAANSSILNKRDQHQHHHHELSINDTNEEEDRDTADE----- 55
           LANPWWT Q+GL G+DPA+  NS  LNK ++      E+SIND +     D  D      
Sbjct: 19  LANPWWTGQIGLAGLDPAS--NSPSLNKANR------EISINDNSNSRGEDDDDRDTGDE 70

Query: 56  PREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFAR 115
           P+EGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPN+LRSHVMEV GGADVAE VA FAR
Sbjct: 71  PKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVVGGADVAECVAQFAR 130

Query: 116 RRQRGVCVLSGSGSVANVTLRQPAAPGAVVALH-------------------GSTGLTVY 156
           RRQRGVCVLSGSGSVANVTLRQPAAPGAVVALH                   GSTGLTVY
Sbjct: 131 RRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGSTGLTVY 190

Query: 157 LAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEE-VTGTQGQIQSTGAA 215
           LAGGQGQVVGGSVVG L+AAGPVMVIAATFANATYERLPLEDDEE  +  QG IQ     
Sbjct: 191 LAGGQGQVVGGSVVGSLIAAGPVMVIAATFANATYERLPLEDDEEAASAGQGHIQG---- 246

Query: 216 TNNNNSPPQIGSSGQPPSAGLPDPSSL-TYNLPPNLIPNGGQL-HEAYAWAHARPPYQ 271
             +NNSPP IGS+GQ P  GLPDPS+L  YNLPPNLIPNGGQL H+AYAWAH RPPYQ
Sbjct: 247 -GSNNSPPPIGSTGQQP--GLPDPSALPVYNLPPNLIPNGGQLGHDAYAWAHGRPPYQ 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574748|ref|XP_003555507.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 190/298 (63%), Positives = 211/298 (70%), Gaps = 42/298 (14%)

Query: 1   LANPWWTSQVGLPGMDPAAAANSSILNKRDQHQHHHHELSINDT----NEEEDRDTADEP 56
           +ANPWWT Q GL G+D     +S  L KR        +L I++     N EED D  DEP
Sbjct: 41  VANPWWTGQGGLSGVD-HPGTHSPGLGKRPS------DLGISENSGGHNREEDEDNRDEP 93

Query: 57  REGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFARR 116
           +EGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPN+LRSHVMEV GGADVAESVA FARR
Sbjct: 94  KEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNTLRSHVMEVTGGADVAESVAQFARR 153

Query: 117 RQRGVCVLSGSGSVANVTLRQPAAPGAVVALH-------------------GSTGLTVYL 157
           RQRGVCVLSGSGSVANVTLRQP+APGAVVALH                   GSTGLTVYL
Sbjct: 154 RQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYL 213

Query: 158 AGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEVTGTQGQIQSTGAATN 217
            GGQGQ+VGGSVVG LVAAGPVMVIAATFANATYERLPL++D+E     G   + GA   
Sbjct: 214 TGGQGQIVGGSVVGSLVAAGPVMVIAATFANATYERLPLDEDDE-----GPSSAAGAQGG 268

Query: 218 NNNSPPQIG---SSGQPPSAGLPDPSSL-TYNLPPNLIPNGGQL-HEAYAWAHARPPY 270
            ++ PP +G   S G     G+PDPSS+  YNLPPN     GQ+ HEA AWAH R P+
Sbjct: 269 GSSPPPPLGIGSSGGGQLQGGMPDPSSMPLYNLPPNG--GVGQVGHEALAWAHGRAPF 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167600640|gb|ABZ89182.1| putative protein [Coffea canephora] gi|326367382|gb|ADZ55300.1| DNA-binding protein [Coffea arabica]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 185/302 (61%), Positives = 218/302 (72%), Gaps = 45/302 (14%)

Query: 1   LANPWWTSQVGLPGMDPAAAANSSILNKRDQHQHHHHELSINDT-----------NEEED 49
           +AN WWT QVGLPG++ +++  S +L K D        +S+ND            +E+E 
Sbjct: 1   MANRWWTGQVGLPGVETSSSTGSPVLKKPDLG------ISMNDNSGSGGGSGGRDDEDER 54

Query: 50  RDTADEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAES 109
            ++ DEP+EGAVEV TRRPRGRPPGSKNKPKPPIFVTRDSPN+LRSHVMEVA G+D+AES
Sbjct: 55  ENSTDEPKEGAVEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDIAES 114

Query: 110 VALFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALH-------------------GS 150
           +A FARRRQRGVCVLS SG+V NVTLRQP+APGAV+ALH                   G+
Sbjct: 115 IAQFARRRQRGVCVLSASGTVTNVTLRQPSAPGAVMALHGRFEILSLTGAFLPGPAPPGA 174

Query: 151 TGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEVTGTQGQIQ 210
           TGLT+YLAGGQGQVVGGSVVG LVA+GPVMVIA+TF+NATYERLP+E+DEE         
Sbjct: 175 TGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIASTFSNATYERLPIEEDEEGG------G 228

Query: 211 STGAATNNNNSPPQIGSSGQPPSAGLPDPSSL-TYNLPPNLIPNGGQL-HEAYAWAHARP 268
           +       N SPP +GS G P   GL DPSS+  YNLPPNL+PNGGQL HEA+AWAH RP
Sbjct: 229 AAQGQLGGNGSPP-LGSGGAPQQGGLGDPSSMPVYNLPPNLMPNGGQLNHEAFAWAHGRP 287

Query: 269 PY 270
           PY
Sbjct: 288 PY 289

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324388027|gb|ADY38789.1| DNA-binding protein [Coffea arabica]

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 184/302 (60%), Positives = 218/302 (72%), Gaps = 45/302 (14%)

Query: 1   LANPWWTSQVGLPGMDPAAAANSSILNKRDQHQHHHHELSINDT-----------NEEED 49
           +AN WWT QVGLPG++ +++  S +L K D        +S+ND            +E+E 
Sbjct: 1   MANRWWTGQVGLPGVETSSSTGSPVLKKPDLG------ISMNDNSGSGGGSGGRDDEDER 54

Query: 50  RDTADEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAES 109
            ++ DEP+EGAVEV TRRPRGRPPGSKNKPKPPIFVTRDSPN+LRSHVMEVA G+D+AES
Sbjct: 55  ENSTDEPKEGAVEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDIAES 114

Query: 110 VALFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALH-------------------GS 150
           +A FARRRQRGVCVLS SG+V NVTLRQP+APGAV+ALH                   G+
Sbjct: 115 IAQFARRRQRGVCVLSASGTVTNVTLRQPSAPGAVMALHGRFEILSLTGAFLPGPAPPGA 174

Query: 151 TGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEVTGTQGQIQ 210
           TGLT+YLAGGQGQVVGGSVVG LVA+GPVMVIA+TF+NATYERLP+E+DEE         
Sbjct: 175 TGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIASTFSNATYERLPIEEDEEGG------G 228

Query: 211 STGAATNNNNSPPQIGSSGQPPSAGLPDPSSL-TYNLPPNLIPNGGQL-HEAYAWAHARP 268
           +       N SPP +GS G P   GL DPSS+  Y+LPPNL+PNGGQL HEA+AWAH RP
Sbjct: 229 AAQGQLGGNGSPP-LGSGGAPQQGGLGDPSSMPVYSLPPNLMPNGGQLNHEAFAWAHGRP 287

Query: 269 PY 270
           PY
Sbjct: 288 PY 289

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087883|emb|CBI35166.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 176/295 (59%), Positives = 203/295 (68%), Gaps = 45/295 (15%)

Query: 1   LANPWWTSQVGLPGMDPAAAANSSILNKRD---QHQHHHHELSINDTNEEEDRDTADEPR 57
           +AN WW  QVGL G+D ++A  S  + K D       +    S     EEE+++ +DEPR
Sbjct: 1   MANRWWAGQVGLQGVDTSSA--SPAMKKPDLGISMNENGGSGSGGGGEEEEEKENSDEPR 58

Query: 58  EGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFARRR 117
           EGA+EV TRRPRGRPPGSKNKPKPPIFVTRDSPN+LRSHVMEVA G+D+ ES+A FARRR
Sbjct: 59  EGAIEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQFARRR 118

Query: 118 QRGVCVLSGSGSVANVTLRQPAAP-GAVVALH-------------------GSTGLTVYL 157
           QRGVCVLS SG+V NVTLRQP+AP GAV+ALH                   GSTGLT+YL
Sbjct: 119 QRGVCVLSASGTVMNVTLRQPSAPGGAVMALHGRFEILSLTGAFLPGPAPPGSTGLTIYL 178

Query: 158 AGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEVTGTQGQIQSTGAATN 217
           AGGQ QVVGGSVVG L+AAGPVMVIAATF+NATYERLPLED+EE  G+  Q Q  G    
Sbjct: 179 AGGQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPLEDEEE-AGSAAQEQLAGGGGG 237

Query: 218 NNNSPPQIGSSGQPPSAGLPDPSSL-TYNLPPNLIPNGGQL-HEAYAWAHARPPY 270
                             + DPSS+  YNLPPNL+PNGGQL H+AY WAH R PY
Sbjct: 238 G-----------------MADPSSMPVYNLPPNLLPNGGQLNHDAYGWAHGRQPY 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463966|ref|XP_002271606.1| PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera]

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 181/296 (61%), Positives = 210/296 (70%), Gaps = 31/296 (10%)

Query: 1   LANPWWTSQVGLPGMDPAAAANSSILNKRD---QHQHHHHELSINDTNEEEDRDTADEPR 57
           +AN WW  QVGL G+D ++A  S  + K D       +    S     EEE+++ +DEPR
Sbjct: 1   MANRWWAGQVGLQGVDTSSA--SPAMKKPDLGISMNENGGSGSGGGGEEEEEKENSDEPR 58

Query: 58  EGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFARRR 117
           EGA+EV TRRPRGRPPGSKNKPKPPIFVTRDSPN+LRSHVMEVA G+D+ ES+A FARRR
Sbjct: 59  EGAIEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQFARRR 118

Query: 118 QRGVCVLSGSGSVANVTLRQPAAP-GAVVALH-------------------GSTGLTVYL 157
           QRGVCVLS SG+V NVTLRQP+AP GAV+ALH                   GSTGLT+YL
Sbjct: 119 QRGVCVLSASGTVMNVTLRQPSAPGGAVMALHGRFEILSLTGAFLPGPAPPGSTGLTIYL 178

Query: 158 AGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEV-TGTQGQIQSTGAAT 216
           AGGQ QVVGGSVVG L+AAGPVMVIAATF+NATYERLPLED+EE  +  Q Q+   G   
Sbjct: 179 AGGQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPLEDEEEAGSAAQEQLAGGGGGG 238

Query: 217 NNNNSPPQIGSSGQPPSAGLPDPSSL-TYNLPPNLIPNGGQL-HEAYAWAHARPPY 270
            +      IG SG    AG+ DPSS+  YNLPPNL+PNGGQL H+AY WAH R PY
Sbjct: 239 GSPPG---IGGSGGQQQAGMADPSSMPVYNLPPNLLPNGGQLNHDAYGWAHGRQPY 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533801|ref|XP_003535447.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  293 bits (749), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 192/299 (64%), Positives = 209/299 (69%), Gaps = 41/299 (13%)

Query: 1   LANPWWTSQVGLPGMDPAAAANSSILNKRDQHQHHHHELSINDTN------EEEDRDTAD 54
           LANPWWT Q GL G+D     +S  L+KR      H +L IN+ +      EE D D  D
Sbjct: 52  LANPWWTGQGGLSGVD-HPGTHSPGLSKR------HSDLGINENSDSHNNREEFDEDNRD 104

Query: 55  EPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFA 114
           EP+EGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPN+LRSHVME+ GGADVAESVA FA
Sbjct: 105 EPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEITGGADVAESVAQFA 164

Query: 115 RRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALH-------------------GSTGLTV 155
           RRRQRGVCVLSGSGSVANVTLRQP+APGAVVALH                   GSTGLTV
Sbjct: 165 RRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTV 224

Query: 156 YLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEVTGTQGQIQSTGAA 215
           YLAGGQGQVVGGSVVG LVAAGPVMVIAATFANATYERLPL++D+E     G     GA 
Sbjct: 225 YLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLDEDDE-----GPSSMVGAQ 279

Query: 216 TNNNNSPPQIG---SSGQPPSAGLPDPSSL-TYNLPPNLIPNGGQLHEAYAWAHARPPY 270
               + P  +G   S G     G+PDPSSL  YNLPPN    G   HEA AWAH R P+
Sbjct: 280 GGGGSPPLPLGIGSSGGGQLQGGIPDPSSLPLYNLPPNGGGGGQVGHEALAWAHGRAPF 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536653|ref|XP_003536851.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 207/309 (66%), Positives = 226/309 (73%), Gaps = 45/309 (14%)

Query: 1   LANPWWTS-QVGL-PGMDPAAAAN-SSILNKRDQHQHHHHELSINDTN-----------E 46
           LANPWWT  QVGL  G+DPAA  + SS LNKR      H +LSIN+ +           E
Sbjct: 48  LANPWWTGHQVGLGVGVDPAATNSPSSNLNKR------HMDLSINERSLVRERQEEEEEE 101

Query: 47  EEDRDTADEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADV 106
           E++RD  DEP+EGAVE GTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADV
Sbjct: 102 EDERDNGDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADV 161

Query: 107 AESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALH------------------ 148
           AESVA FARRRQRGVCVLSGSGSVANVTLRQP+APGAVVALH                  
Sbjct: 162 AESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGAFLPGPAP 221

Query: 149 -GSTGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEVTG--T 205
            G+TGLTVYLAGGQGQVVGGSVVG LVAAGPVMVIAATFANATYERLPLE++E+  G   
Sbjct: 222 PGATGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLEEEEDDGGGSV 281

Query: 206 QGQIQSTGAATNNNNSPPQIGSSGQPPSAGLPDPSSL-TYNLPPNLIPNGGQL-HEAYAW 263
           QG     G+     +S    GS G     G+P PSSL  YNLPPNL+PNGGQ+ HEA+AW
Sbjct: 282 QGGSTLGGSPHGIGSSGGGGGSGGGHLPGGIPGPSSLPLYNLPPNLLPNGGQVGHEAFAW 341

Query: 264 A--HARPPY 270
           A  H RPPY
Sbjct: 342 AHGHGRPPY 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432991|ref|XP_002284519.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Vitis vinifera]

 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 191/280 (68%), Positives = 207/280 (73%), Gaps = 44/280 (15%)

Query: 15  MDPAAAANSSILNKRDQHQHHHHELSINDT----NEEEDRDTADEPREGAVEVGTRRPRG 70
           MDPAA   S +LNKRD+      E+SIND     ++EE++D   EP EGAVEVGTRRPRG
Sbjct: 1   MDPAAV--SPMLNKRDR------EISINDNPGTGDDEEEKDNEGEPTEGAVEVGTRRPRG 52

Query: 71  RPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSV 130
           RPPGSKNKPKPPIFVTRDSPN+LRSHVMEVAGG DVAESVA FARRRQRGVCVLSGSGSV
Sbjct: 53  RPPGSKNKPKPPIFVTRDSPNALRSHVMEVAGGHDVAESVAQFARRRQRGVCVLSGSGSV 112

Query: 131 ANVTLRQPAAPGAVVALH-------------------GSTGLTVYLAGGQGQVVGGSVVG 171
           ANVTLRQPAAPGAVVALH                   GSTGLTVYLAGGQGQVVGGSVVG
Sbjct: 113 ANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGSTGLTVYLAGGQGQVVGGSVVG 172

Query: 172 QLVAAGPVMVIAATFANATYERLPLEDDEEVTGTQGQIQSTGAATNNNNSPPQIGSSGQP 231
            LVAAGPV+VIAATFANATYERLPLE++EE         S  A          IGSSG  
Sbjct: 173 SLVAAGPVIVIAATFANATYERLPLEEEEEGGQAPPPSGSPPA----------IGSSGGQ 222

Query: 232 PSAGLPDPSSLTYNLPPNLIPNGGQL-HEAYAWAHARPPY 270
             +GLP+     YNLPPNL+PNGGQL H+ Y+WAHARPPY
Sbjct: 223 HHSGLPELP--IYNLPPNLLPNGGQLSHDPYSWAHARPPY 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812096|emb|CAN61523.1| hypothetical protein VITISV_016751 [Vitis vinifera]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/240 (67%), Positives = 182/240 (75%), Gaps = 26/240 (10%)

Query: 54  DEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALF 113
           DEPREGA+EV TRRPRGRPPGSKNKPKPPIFVTRDSPN+LRSHVMEVA G+D+ ES+A F
Sbjct: 23  DEPREGAIEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQF 82

Query: 114 ARRRQRGVCVLSGSGSVANVTLRQPAAP-GAVVALH-------------------GSTGL 153
           ARRRQRGVCVLS SG+V NVTLRQP+AP GAV+ALH                   GSTGL
Sbjct: 83  ARRRQRGVCVLSASGTVMNVTLRQPSAPGGAVMALHGRFEILSLTGAFLPGPAPPGSTGL 142

Query: 154 TVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLEDDEEV-TGTQGQIQST 212
           T+YLAGGQ QVVGGSVVG L+AAGPVMVIAATF+NATYERLPLED+EE  +  Q Q+   
Sbjct: 143 TIYLAGGQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPLEDEEEAGSAAQEQLAGG 202

Query: 213 GAATNNNNSPPQIGSSGQPPSAGLPDPSSL-TYNLPPNLIPNGGQL-HEAYAWAHARPPY 270
           G    +      IG SG    AG+ DPSS+  YNLPPNL+PNGGQL H+AY WAH R PY
Sbjct: 203 GGGGGSPPG---IGGSGGQQQAGMADPSSMPVYNLPPNLLPNGGQLNHDAYGWAHGRQPY 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:505006460	281	AHL20 "AT4G14465" [Arabidopsis	0.523	0.505	0.515	2.2e-34
TAIR|locus:2084958	315	AHL19 "AT-hook motif nuclear-l	0.546	0.469	0.488	6.7e-33
TAIR|locus:2045585	257	TEK "AT2G42940" [Arabidopsis t	0.247	0.260	0.597	7.6e-33
TAIR|locus:2099956	310	AGF2 "AT-hook protein of GA fe	0.247	0.216	0.716	8.2e-26
TAIR|locus:2050946	317	AHL22 "AT2G45430" [Arabidopsis	0.247	0.211	0.690	1.3e-23
TAIR|locus:2132639	324	AT4G22810 "AT4G22810" [Arabido	0.247	0.206	0.657	2.6e-23
TAIR|locus:2118051	339	AT4G12050 "AT4G12050" [Arabido	0.247	0.197	0.647	1.1e-22
TAIR|locus:2063469	285	GIK "GIANT KILLER" [Arabidopsi	0.250	0.238	0.588	2.5e-21
TAIR|locus:2157007	276	AT5G49700 [Arabidopsis thalian	0.261	0.257	0.534	1.7e-20
TAIR|locus:2037350	311	ESC "ESCAROLA" [Arabidopsis th	0.453	0.395	0.404	1.5e-19

TAIR|locus:505006460 AHL20 "AT4G14465" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 81/157 (51%), Positives = 105/157 (66%)

Query:     1 LANPWWTSQVGLPGMDPAAAANSSILNKRDQHQHHHHE--LSINDT------NEEEDRDT 52
             +ANPWWT+Q GL GM      + S+ +    HQ+HHH+  L+  D       +++ D+D 
Sbjct:     1 MANPWWTNQSGLAGM-----VDHSVSS--GHHQNHHHQSLLTKGDLGIAMNQSQDNDQDE 53

Query:    53 ADEPREGAVEVXXXXXXXXXXXXXXXXXXXIFVTRDSPNSLRSHVMEVAGGADVAESVAL 112
              D+PREGAVEV                   IFVTRDSPN+LRSHV+E++ G+DVA+++A 
Sbjct:    54 EDDPREGAVEVVNRRPRGRPPGSKNKPKAPIFVTRDSPNALRSHVLEISDGSDVADTIAH 113

Query:   113 FARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHG 149
             F+RRRQRGVCVLSG+GSVANVTLRQ AAPG VV+L G
Sbjct:   114 FSRRRQRGVCVLSGTGSVANVTLRQAAAPGGVVSLQG 150

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2084958 AHL19 "AT-hook motif nuclear-localized protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 84/172 (48%), Positives = 104/172 (60%)

Query:     1 LANPWWTSQVGLPGMDPAAAANSSILNKRDQH-----------QHHHHELSINDTNEEED 49
             +ANPWWT QV L G++      SS L K D H            +HHH   +++ N ++D
Sbjct:     1 MANPWWTGQVNLSGLE-TTPPGSSQLKKPDLHISMNMAMDSGHNNHHHHQEVDNNNNDDD 59

Query:    50 RD--TAD--EPREGAVEVXXXXXXXXXXXXXXXXXXXIFVTRDSPNSLRSHVMEVAGGAD 105
             RD  + D  EPREGAVE                    IFVTRDSPN+L+SHVME+A G D
Sbjct:    60 RDNLSGDDHEPREGAVEAPTRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVMEIASGTD 119

Query:   106 VAESVALFARRRQRGVCVLSGSGSVANVTLRQP------AAPG--AVVALHG 149
             V E++A FARRRQRG+C+LSG+G+VANVTLRQP      AAPG  AV+AL G
Sbjct:   120 VIETLATFARRRQRGICILSGNGTVANVTLRQPSTAAVAAAPGGAAVLALQG 171

GO:0005737 "cytoplasm" evidence=ISM

GO:0050832 "defense response to fungus" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2045585 TEK "AT2G42940" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
 Identities = 40/67 (59%), Positives = 55/67 (82%)

Query:    83 IFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPG 142
             I VT DSPNSLR++ +E++ G D+ E+++ FARR+QRG+C+LS +G V NVTLRQPA+ G
Sbjct:    70 IIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQRGLCILSANGCVTNVTLRQPASSG 129

Query:   143 AVVALHG 149
             A+V LHG
Sbjct:   130 AIVTLHG 136

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0010529 "negative regulation of transposition" evidence=IMP

GO:0031490 "chromatin DNA binding" evidence=IDA

GO:0035067 "negative regulation of histone acetylation" evidence=IMP

GO:1900111 "positive regulation of histone H3-K9 dimethylation" evidence=IMP

TAIR|locus:2099956 AGF2 "AT-hook protein of GA feedback 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 48/67 (71%), Positives = 56/67 (83%)

Query:    83 IFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPG 142
             + VT++SPNSL+SHV+E+A GADVAES+  FARRR RGV VLSGSG V NVTLRQPAA G
Sbjct:   105 VVVTKESPNSLQSHVLEIATGADVAESLNAFARRRGRGVSVLSGSGLVTNVTLRQPAASG 164

Query:   143 AVVALHG 149
              VV+L G
Sbjct:   165 GVVSLRG 171

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050946 AHL22 "AT2G45430" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 49/71 (69%), Positives = 59/71 (83%)

Query:    83 IFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAA-P 141
             I +TRDS N+L+SHVMEVA G DV ESV +FARRRQRG+CVLSG+G+V NVT+RQPA+ P
Sbjct:   106 IIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLSGNGAVTNVTIRQPASVP 165

Query:   142 G---AVVALHG 149
             G   +VV LHG
Sbjct:   166 GGGSSVVNLHG 176

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2132639 AT4G22810 "AT4G22810" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
 Identities = 46/70 (65%), Positives = 58/70 (82%)

Query:    83 IFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAA-- 140
             I +TRDS N+LR+HVME+  G D+ ESVA FARRRQRGVCV+SG+G+V NVT+RQP +  
Sbjct:   122 IIITRDSANALRTHVMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSHP 181

Query:   141 -PGAVVALHG 149
              PG+VV+LHG
Sbjct:   182 SPGSVVSLHG 191

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118051 AT4G12050 "AT4G12050" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 44/68 (64%), Positives = 57/68 (83%)

Query:    83 IFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAP- 141
             I +TRDS N+LR+HVME+  G D+ + +A FARRRQRGVCV+SG+GSV NVT+RQP +P 
Sbjct:   135 IIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTIRQPGSPP 194

Query:   142 GAVVALHG 149
             G+VV+LHG
Sbjct:   195 GSVVSLHG 202

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2063469 GIK "GIANT KILLER" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 40/68 (58%), Positives = 55/68 (80%)

Query:    83 IFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPG 142
             + VTR+S N+LR+H++EV  G DV E ++ +ARRRQRG+CVLSG+G+V NV++RQP A G
Sbjct:    95 VIVTRESANTLRAHILEVGSGCDVFECISTYARRRQRGICVLSGTGTVTNVSIRQPTAAG 154

Query:   143 AVVALHGS 150
             AVV L G+
Sbjct:   155 AVVTLRGT 162

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IDA

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0048440 "carpel development" evidence=IMP

GO:0048653 "anther development" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2157007 AT5G49700 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 39/73 (53%), Positives = 50/73 (68%)

Query:    83 IFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQP--AA 140
             +FVTRD+   +  +++EV  G DV E++  F RR+  GVCVLSGSGSVANVTLRQP  AA
Sbjct:    73 VFVTRDTDPPMSPYILEVPSGNDVVEAINRFCRRKSIGVCVLSGSGSVANVTLRQPSPAA 132

Query:   141 PGAVVALHGSTGL 153
              G+ +  HG   L
Sbjct:   133 LGSTITFHGKFDL 145

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037350 ESC "ESCAROLA" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 53/131 (40%), Positives = 70/131 (53%)

Query:    31 QHQHHHHELSINDTNEEEDRDTADEPREGAVEVXXXXXXXXXXX--------XXXXXXXX 82
             QHQ H  +   +D + E D    D  ++G  +                            
Sbjct:    43 QHQQHQQQQQPSDDSRESDHSNKDHHQQGRPDSDPNTSSSAPGKRPRGRPPGSKNKAKPP 102

Query:    83 IFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPG 142
             I VTRDSPN+LRSHV+EV+ GAD+ ESV+ +ARRR RGV VL G+G+V+NVTLRQP  PG
Sbjct:   103 IIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPG 162

Query:   143 AVVALHGSTGL 153
                 + G  G+
Sbjct:   163 NGGGVSGGGGV 173

GO:0005737 "cytoplasm" evidence=ISM

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006325 "chromatin organization" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0003680 "AT DNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020175001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (413 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	8e-31
cd11378	113	cd11378, DUF296, Domain of unknown function found	2e-18

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  110 bits (278), Expect = 8e-31
 Identities = 49/120 (40%), Positives = 60/120 (50%), Gaps = 21/120 (17%)

Query: 93  LRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQP---AAPGAVVALHG 149
            R HV+ +  G D+ ES+  FAR+R  G  VLSG G+V+NVTLRQP   A    VV L G
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 150 -----------------STGLTVYLAGGQGQVVGGSVV-GQLVAAGPVMVIAATFANATY 191
                            S  L V LA   GQVVGG +  G + A G V+V   +F NA  
Sbjct: 61  RFEILSLSGTISPGGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSFENARR 120

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score = 78.4 bits (194), Expect = 2e-18
 Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 22/114 (19%)

Query: 94  RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPA---APGAVVALHG- 149
           R  V+ +  G D+ ES+  FAR       VLSG G+V+N TLR P         V   G 
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 150 -----------------STGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATF 186
                            S  L V LA   G+V+GG ++G LV AG V V+    
Sbjct: 61  LEILSLSGNISPDDGKPSGHLHVSLADSDGRVIGGHLLGALV-AGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.76
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.33
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	88.66

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.76  E-value=1.6e-18  Score=140.20  Aligned_cols=99  Identities=34%  Similarity=0.461  Sum_probs=85.9

Q ss_pred             ceEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCC--C---------CCcEEEEcC---------CCC
Q 040245           93 LRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPA--A---------PGAVVALHG---------STG  152 (271)
Q Consensus        93 l~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~--s---------~g~ivTL~G---------~tg  152 (271)
                      ||+|++++.+||||.++|.+||++.++..|++|+.|++++|+|+++.  .         +.+|++|.|         ..|
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~~~~H   80 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDGKPFVH   80 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETTEEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCCCCcce
Confidence            69999999999999999999999999988999999999999999962  1         346888888         349


Q ss_pred             eEEEEeCCCCceeceeec-cceEecccEEEEEEecccccc
Q 040245          153 LTVYLAGGQGQVVGGSVV-GQLVAAGPVMVIAATFANATY  191 (271)
Q Consensus       153 LsVSLAg~qGQVvGG~V~-G~LiAAgpV~VIaaSF~n~~y  191 (271)
                      |||+|++.+|+|+||++. |.+.++..|.|+..++.+.+|
T Consensus        81 lHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~~~~~~~~~~  120 (120)
T PF03479_consen   81 LHISLADPDGQVFGGHLLEGTVFATAEVVITELSGINFTR  120 (120)
T ss_dssp             EEEEEE-TTSEEEEEEEEEEEEEEEEEEEEEEETTEEEEE
T ss_pred             EEEEEECCCCeEEeeEeCCCEEeEEEEEEEEEecCccccC
Confidence            999999999999999999 888888888888888877654

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.33  E-value=1.2e-11  Score=105.41  Aligned_cols=104  Identities=20%  Similarity=0.268  Sum_probs=93.8

Q ss_pred             ceEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCCC------------CCcEEEEcC-------CCCe
Q 040245           93 LRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAA------------PGAVVALHG-------STGL  153 (271)
Q Consensus        93 l~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~s------------~g~ivTL~G-------~tgL  153 (271)
                      =|-+++++.+|+|+++.|.+||++......|.+|.|++++++||.-..            +.+|++|.|       ..||
T Consensus         9 gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~p~~Hl   88 (141)
T COG1661           9 GRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDDPFVHL   88 (141)
T ss_pred             ceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCCCcEEE
Confidence            467899999999999999999999999779999999999999998872            458999999       3799


Q ss_pred             EEEEeCCCCceeceeeccceEecccEEEEEEeccccccccccCC
Q 040245          154 TVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLE  197 (271)
Q Consensus       154 sVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl~  197 (271)
                      |++|++.+|+++|||+....+-. +++|+|-......+.|.+-+
T Consensus        89 Ha~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~  131 (141)
T COG1661          89 HAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDP  131 (141)
T ss_pred             EEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCC
Confidence            99999999999999999988888 99999999888888887644

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=88.66  E-value=0.18  Score=27.80  Aligned_cols=13  Identities=46%  Similarity=0.843  Sum_probs=4.2

Q ss_pred             CCCCCCCCCCCCC
Q 040245           66 RRPRGRPPGSKNK   78 (271)
Q Consensus        66 rRpRGRPpGSknK   78 (271)
                      +|+||||+.+..|
T Consensus         1 ~r~RGRP~k~~~~   13 (13)
T PF02178_consen    1 KRKRGRPRKNAKK   13 (13)
T ss_dssp             S--SS--TT----
T ss_pred             CCcCCCCccccCC
Confidence            5899999987654

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	1e-24
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	3e-19
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	7e-13
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3htn_A	149	Putative DNA binding protein; DUF269 family protei	3e-04

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 95.5 bits (237), Expect = 1e-24
 Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 78  KPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVALFARRRQ-RGVCVLSGSGSVANVTLR 136
                + V+  + ++ R + + +  G +V   +  F ++ Q R   +   +GS+ +V LR
Sbjct: 3   GDPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALR 62

Query: 137 QPAAPGAVV-------------ALHGSTGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIA 183
                                        L + ++   G ++GG ++        + ++ 
Sbjct: 63  YAGQEATTSLTGTFEVISLNGTLELTGEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVI 122

Query: 184 ATFANATYERLPLED 198
                 T+ R P   
Sbjct: 123 GELPALTFSRQPCAI 137

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 80.8 bits (199), Expect = 3e-19
 Identities = 15/120 (12%), Positives = 45/120 (37%), Gaps = 14/120 (11%)

Query: 93  LRSHVMEVAGGADVAESVALFARRRQ-RGVCVLSGSGSVANVTLRQPAAPGA-------- 143
           +    + +  G D+ + +    ++ +     + S  G ++ + +R   +           
Sbjct: 2   IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQVSAPFE 61

Query: 144 VVALHGS-----TGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLED 198
           +++L G+       L + +A  QG+V GG ++   +      ++   +    + R    +
Sbjct: 62  ILSLSGTLTYQHCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPN 121

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 63.4 bits (154), Expect = 7e-13
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 23/125 (18%)

Query: 94  RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLR---QPAAPGAVVALHG- 149
           R+++  V  G ++   +  F ++      +++G G++ N  +    +      V+ L G 
Sbjct: 10  RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGS 69

Query: 150 -----------------STGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYE 192
                                 V L   +G V GG +V   V    + +          E
Sbjct: 70  YELISLIGNVSLKDGEPFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ--ELKGEKIE 127

Query: 193 RLPLE 197
           R P +
Sbjct: 128 RKPTK 132

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 46.9 bits (111), Expect = 7e-07
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 26/131 (19%)

Query: 94  RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLR------------QPAAP 141
           +  ++ +  G D+   +  F   +      +S  G+V +  +             +   P
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 142 GAVVALHGSTGL--------TVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYER 193
             +++L G+  +           L G  G+V GG +    V A  V V+    +    ER
Sbjct: 70  LEILSLSGNVSMKDSKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLP--LSGEAPER 127

Query: 194 LPLEDDEEVTG 204
                DE+ TG
Sbjct: 128 AF---DEQ-TG 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 28/199 (14%), Positives = 46/199 (23%), Gaps = 101/199 (50%)

Query: 32  HQHHHH--------ELSIND---TNEE---ED---RDTADEPR-------------EGAV 61
           H HHHH        +    D     E+   ++   +D  D P+                 
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 62  EVGTRR-----------------------------------PRGRPPGSK---------- 76
             GT R                                    R     ++          
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 77  --NKPKPPIFVTRDSP-NSLRSHVMEVAGGADVAESVALFARRRQRGVCV--LSGSG-SV 130
             N+      V+R  P   LR  ++E+               R  + V +  + GSG + 
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLEL---------------RPAKNVLIDGVLGSGKTW 165

Query: 131 -ANVTLR----QPAAPGAV 144
            A         Q      +
Sbjct: 166 VALDVCLSYKVQCKMDFKI 184

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 12/126 (9%), Positives = 36/126 (28%), Gaps = 23/126 (18%)

Query: 94  RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLR------------QPAAP 141
             +++ +    ++ +++  F + +      ++G G++  +TLR                 
Sbjct: 16  NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQ 75

Query: 142 GAVVALHG---------STGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYE 192
             +  L G            L + +       + G ++  +              +    
Sbjct: 76  MEISNLTGNISSMNEQVYLHLHITVGRSDYSALAGHLLSAIQNG--AGEFVVEDYSERIS 133

Query: 193 RLPLED 198
           R    D
Sbjct: 134 RTYNPD 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.82
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.82
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.8
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.76
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.68
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.46
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	97.32

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.82  E-value=5.6e-20  Score=153.74  Aligned_cols=112  Identities=19%  Similarity=0.360  Sum_probs=98.9

Q ss_pred             eecCCCCCceEEEEEecCCccHHHHHHHHHHhcCc-ccEEecccceeeeEEeeCCCCCC--------cEEEEcC-----C
Q 040245           85 VTRDSPNSLRSHVMEVAGGADVAESVALFARRRQR-GVCVLSGSGSVANVTLRQPAAPG--------AVVALHG-----S  150 (271)
Q Consensus        85 it~~s~~al~pHVIeV~~GeDV~e~I~~Farrr~r-aiCVLSasGtVsnVTLRqp~s~g--------~ivTL~G-----~  150 (271)
                      ++.++++.+++|++++.+|+||+++|.+||+++++ +.||||+.|+|++|+||++....        +|++|.|     .
T Consensus        10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~~~~~~g~~EIlsl~Gti~~~~   89 (154)
T 2hx0_A           10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELTG   89 (154)
T ss_dssp             --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSSCEEEEEEEEEEEEEEEEETTE
T ss_pred             eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCccEecCCcEEEEEeeeeEeCCC
Confidence            45677899999999999999999999999998886 89999999999999999998632        5677777     3


Q ss_pred             CCeEEEEeCCCCceeceeeccceEecccEEEEEEeccccccccccC
Q 040245          151 TGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPL  196 (271)
Q Consensus       151 tgLsVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl  196 (271)
                      .||||+|++.||||+||+|....++..+++|++..|.+..|+|.|-
T Consensus        90 ~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D  135 (154)
T 2hx0_A           90 EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPC  135 (154)
T ss_dssp             EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEEC
T ss_pred             CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecC
Confidence            6899999999999999999987666689999999999999999983

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.82  E-value=6.9e-20  Score=151.18  Aligned_cols=105  Identities=14%  Similarity=0.289  Sum_probs=93.6

Q ss_pred             ceEEEEEecCCccHHHHHHHHHHhcCc-ccEEecccceeeeEEeeCCCCCC--------cEEEEcC-----CCCeEEEEe
Q 040245           93 LRSHVMEVAGGADVAESVALFARRRQR-GVCVLSGSGSVANVTLRQPAAPG--------AVVALHG-----STGLTVYLA  158 (271)
Q Consensus        93 l~pHVIeV~~GeDV~e~I~~Farrr~r-aiCVLSasGtVsnVTLRqp~s~g--------~ivTL~G-----~tgLsVSLA  158 (271)
                      |++|++++.+|+||.++|.+||++.++ +.||+|+.|+|++++||+++.+.        +|++|.|     ..+|+|+|+
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~~~~~~g~~EIlsl~Gti~~~~~HlHisl~   81 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQVSAPFEILSLSGTLTYQHCHLHIAVA   81 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSCEEEECSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCccEecCCcEEEEEeEEEEeCCCCEEEEEEE
Confidence            899999999999999999999999886 89999999999999999998642        5677777     468999999


Q ss_pred             CCCCceeceeeccceEecccEEEEEEeccccccccccCC
Q 040245          159 GGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLE  197 (271)
Q Consensus       159 g~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl~  197 (271)
                      +.||||+||+|.+..+...+++|++..|.+..|+|.|-+
T Consensus        82 ~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~  120 (142)
T 2p6y_A           82 DAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDP  120 (142)
T ss_dssp             CTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEET
T ss_pred             CCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCC
Confidence            999999999999866667899999999999999999833

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.80  E-value=1.5e-19  Score=148.70  Aligned_cols=102  Identities=19%  Similarity=0.302  Sum_probs=90.6

Q ss_pred             eEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCCCC------------CcEEEEcC---------CCC
Q 040245           94 RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAP------------GAVVALHG---------STG  152 (271)
Q Consensus        94 ~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~s~------------g~ivTL~G---------~tg  152 (271)
                      ++|++++.+|+||.++|.+||+++++..|++|+.|+|++|+||+++..            .+|++|.|         ..|
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~p~~H   89 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGEPFVH   89 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTEEEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCCceee
Confidence            799999999999999999999999987677799999999999976542            36788887         369


Q ss_pred             eEEEEeCCCCceeceeeccceEecccEEEEEEeccccccccccCCc
Q 040245          153 LTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLED  198 (271)
Q Consensus       153 LsVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl~~  198 (271)
                      |||+|++.||+|+||||...+ .. +++|++.+|.+..|+|+| ++
T Consensus        90 lHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~-~e  132 (143)
T 2dt4_A           90 AHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP-TK  132 (143)
T ss_dssp             EEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC-CT
T ss_pred             EEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC-CC
Confidence            999999999999999999887 44 888999999999999999 54

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.76  E-value=1.8e-18  Score=142.70  Aligned_cols=102  Identities=19%  Similarity=0.269  Sum_probs=89.8

Q ss_pred             eEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCCCCC------------cEEEEcC---------CCC
Q 040245           94 RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPG------------AVVALHG---------STG  152 (271)
Q Consensus        94 ~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~s~g------------~ivTL~G---------~tg  152 (271)
                      ++|+|++.+|+||+++|.+||++.++..|++|+.|+|++++||+++...            +|++|.|         ..+
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~p~~H   89 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKPFCH   89 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTEEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCCceee
Confidence            6999999999999999999999999765556999999999999987532            5777777         368


Q ss_pred             eEEEEeCCCCceeceeeccceEecccEEEEEEeccccccccccCCc
Q 040245          153 LTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLED  198 (271)
Q Consensus       153 LsVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl~~  198 (271)
                      |+|+|+ .||+|+||+|.+.+|  .+++|++.+|.+..|+|+|-++
T Consensus        90 lHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e  132 (146)
T 2h6l_A           90 IHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ  132 (146)
T ss_dssp             EEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred             EEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence            999999 999999999999886  6999999999999999998543

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.68  E-value=1.1e-16  Score=133.17  Aligned_cols=101  Identities=12%  Similarity=0.246  Sum_probs=88.7

Q ss_pred             eEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCCC------------CCcEEEEcC---------CCC
Q 040245           94 RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAA------------PGAVVALHG---------STG  152 (271)
Q Consensus        94 ~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~s------------~g~ivTL~G---------~tg  152 (271)
                      +.|++++.+|+||+++|.+||+++++..|++++.|++++|+||+++.            +.+|++|.|         ..|
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~p~~H   95 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQVYLH   95 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCCceEE
Confidence            78999999999999999999999999877779999999999998653            236788877         359


Q ss_pred             eEEEEeCCCCceeceeeccceEecccEEEEEEeccccccccccC
Q 040245          153 LTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPL  196 (271)
Q Consensus       153 LsVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl  196 (271)
                      |||+|++.+|+|+||||... ++..+++|++..+.. .++|.+-
T Consensus        96 lH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~~D  137 (149)
T 3htn_A           96 LHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRTYN  137 (149)
T ss_dssp             EEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEEEE
T ss_pred             EEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEeeC
Confidence            99999999999999999987 777899999998877 7887753

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.46  E-value=2e-13  Score=113.09  Aligned_cols=101  Identities=18%  Similarity=0.258  Sum_probs=86.2

Q ss_pred             eEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCCC-----------CCcEEEEcC---------CCCe
Q 040245           94 RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAA-----------PGAVVALHG---------STGL  153 (271)
Q Consensus        94 ~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~s-----------~g~ivTL~G---------~tgL  153 (271)
                      +-+++++.+|+||.++|.+||++.+...+++++.|++++++|+....           +.+|++|.|         ..||
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~~~Ei~sl~Gtis~~dG~p~~Hl   92 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNVEMANMTGSIAWKEGKPSIHA   92 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEecCcEEEEEEEEEEcCCCCceEEE
Confidence            45899999999999999999999998666779999999999995432           347888888         3599


Q ss_pred             EEEEeCCCCceeceeeccceEecccEEEEEEecccccccccc
Q 040245          154 TVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLP  195 (271)
Q Consensus       154 sVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlp  195 (271)
                      ||+|++.+|+|+|||+....+...+++|++..+. ..+.|.+
T Consensus        93 H~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~  133 (147)
T 3hwu_A           93 HGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFV  133 (147)
T ss_dssp             EEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEE
T ss_pred             EEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEE
Confidence            9999999999999999988555569999998765 4888877

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=97.32  E-value=9.2e-05  Score=46.55  Aligned_cols=16  Identities=69%  Similarity=1.132  Sum_probs=14.2

Q ss_pred             cCCCCCCCCCCCCCCC
Q 040245           64 GTRRPRGRPPGSKNKP   79 (271)
Q Consensus        64 ~~rRpRGRPpGSknKp   79 (271)
                      ..|||||||.|||||.
T Consensus         3 tpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             SCCCCSSCCTTCCCCS
T ss_pred             CCcCCCCCcCcccccC
Confidence            3599999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	4e-24
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	4e-14

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 92.3 bits (229), Expect = 4e-24
 Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 14/124 (11%)

Query: 89  SPNSLRSHVMEVAGGADVAESVALFARRRQ-RGVCVLSGSGSVANVTLRQPAAPGA---- 143
           + ++ R + + +  G +V   +  F ++ Q R   +   +GS+ +V LR           
Sbjct: 2   NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTSLT 61

Query: 144 ----VVALHGS-----TGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERL 194
               V++L+G+       L + ++   G ++GG ++        + ++       T+ R 
Sbjct: 62  GTFEVISLNGTLELTGEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQ 121

Query: 195 PLED 198
           P   
Sbjct: 122 PCAI 125

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 65.3 bits (159), Expect = 4e-14
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 28/132 (21%)

Query: 94  RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPGA---------- 143
           +  ++ +  G D+   +  F   +      +S  G+V +  +                  
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 144 --VVALHG---------STGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYE 192
             +++L G            + V L G  G+V GG +    V A  V V+    +    E
Sbjct: 70  LEILSLSGNVSMKDSKPFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVL--PLSGEAPE 126

Query: 193 RLPLEDDEEVTG 204
           R     DE+ TG
Sbjct: 127 RAF---DEQ-TG 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.8
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.55

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=2.3e-19  Score=145.38  Aligned_cols=108  Identities=19%  Similarity=0.337  Sum_probs=99.9

Q ss_pred             CCCCceEEEEEecCCccHHHHHHHHHHhcCc-ccEEecccceeeeEEeeCCCCC--------CcEEEEcC-----CCCeE
Q 040245           89 SPNSLRSHVMEVAGGADVAESVALFARRRQR-GVCVLSGSGSVANVTLRQPAAP--------GAVVALHG-----STGLT  154 (271)
Q Consensus        89 s~~al~pHVIeV~~GeDV~e~I~~Farrr~r-aiCVLSasGtVsnVTLRqp~s~--------g~ivTL~G-----~tgLs  154 (271)
                      +.++.|.|++++.+||||+++|.+||++.+. +.||+|+.|++++|+|+++...        .+|++|.|     ..|||
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~~~~~~~g~~Ei~sl~G~I~~~~~HlH   81 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELTGEHLH   81 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSSCEEEEEEEEEEEEEEEEETTEEEEE
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCCCcEEecCcEEEEEEEEEeccCCCeEE
Confidence            4678899999999999999999999999984 9999999999999999998753        37889998     56999


Q ss_pred             EEEeCCCCceeceeeccceEecccEEEEEEeccccccccccC
Q 040245          155 VYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPL  196 (271)
Q Consensus       155 VSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl  196 (271)
                      |+|++.+|+|+||++...++++.+++|++..|.+..|+|.+-
T Consensus        82 ~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D  123 (136)
T d2hx0a1          82 LAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPC  123 (136)
T ss_dssp             EEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEEC
T ss_pred             EEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccC
Confidence            999999999999999999999999999999999999999883

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.55  E-value=6e-15  Score=118.25  Aligned_cols=99  Identities=19%  Similarity=0.301  Sum_probs=86.5

Q ss_pred             eEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCCC------------CCcEEEEcC---------CCC
Q 040245           94 RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAA------------PGAVVALHG---------STG  152 (271)
Q Consensus        94 ~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~s------------~g~ivTL~G---------~tg  152 (271)
                      |.|++++.+|+||+++|.+||++.++..|++|+.|++++|+|+....            +-+|++|.|         ..|
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~p~~H   89 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKPFCH   89 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCCcEEE
Confidence            78999999999999999999999999889999999999999995321            237888888         359


Q ss_pred             eEEEEeCCCCceeceeeccceEecccEEEEEEecccccccccc
Q 040245          153 LTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLP  195 (271)
Q Consensus       153 LsVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlp  195 (271)
                      +|+++++ +|+++|||+....+.  ++++++-+|.+..++|.|
T Consensus        90 lH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~~~~~R~~  129 (138)
T d2h6la1          90 IHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSGEAPERAF  129 (138)
T ss_dssp             EEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBSCCCBEEE
T ss_pred             EEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecCCceEEec
Confidence            9999986 799999999988775  467777789999999997