Citrus Sinensis ID: 040254

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-----
Protein Sequence
MNIVPAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTTTNIGLP
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccccccccEEEccccccEEcccccccccccccccccccccccccccHHHHcccccccEEcccccccccccHHHHccccccEEEccccccccccccccccccccccccccccccEEcccccccccccccEEEccccccEEEccHHcccccccccEEEcccccccccccHHccccccccEEEccccccEEcccccccccccccccccccccEEEccccccccccccccccccccccccccEEEccccccEEcccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEEEccccccccccHHHHHccccccEEEEccccccccccHHHccHHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEcccccEEEEcccccccccccHHHccccccccccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccccHccccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnivpaaggqiisCHTEKSILrnhggfnilmqPAMNKLVqryhlpsignlthishlnlshnhvhgplpinsfHFLTLLEIIDLSYnslsgeltglipslawnhsfcsmrlldfsyndfssqvpprlgncsrlKSFQAGYSNLLRSLPDDIYAAasleepslhfnklsgfisndIINLTSLLVLELYSKELIgsiprdigkltNLKYLLLYRNNlsgslpssmmnctnlktlNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNqlegqippeiIKLKSLILMGCKNLNVLFLTMNfmneatpnydqnkisdgfQNLRAVSLAGcqltgqvplwlSKLTKLEVLLLSGnqitgsipgwfgnlpSLFYFALsqnnisgefpkelsrlqplvieqnkfnrnkpdlpfflfpnqnstshqynrifglrPTIFlannslsgripaetgqlKFLNVLdlgnnnfagsipnqisqLTILERLDLsknhlsennlqgpipsggqlhtfppssfegnpefcsdianrsstteprtttniglp
Flexible Loop (DISEMBL)
mnivpaaggqiisCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIanrsstteprtttniglp
Low Complexity Region (SEG)
MNIVPAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGkltnlkylllyrnnlSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPlwlskltklevlllsGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTTTNIGLP
Disordered region (IsUnstruct)
******AGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLD*********************************************************
Disordered Region (DISOPRED)
*NIVPAAGGQIISCHTEKSILRNHGGFNI****************SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVI**************FLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCS********************
Disordered Region (DISEMBL)
MNIVPAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIAN****************
Disordered Region (DISPRO)
*NIVPAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIAN****************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNIVPAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTTTNIGLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	555	2.2.26 [Sep-21-2011]
Q9C7S5	1095	Tyrosine-sulfated glycope	yes	no	0.913	0.463	0.408	1e-112
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.882	0.672	0.402	1e-105
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.861	0.474	0.364	2e-73
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.949	0.516	0.347	8e-73
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.873	0.468	0.335	3e-68
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.875	0.389	0.303	8e-47
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.812	0.431	0.313	6e-46
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.899	0.427	0.296	4e-45
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.837	0.464	0.304	2e-43
Q9LHP4	1141	Receptor-like protein kin	no	no	0.805	0.391	0.321	4e-43

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  405 bits (1042), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/600 (40%), Positives = 328/600 (54%), Gaps = 93/600 (15%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL------------- 92
           S+ +L  +S L+LSHN + GPLP      L  L ++DLSYNS  GEL             
Sbjct: 111 SVLDLQRLSRLDLSHNRLSGPLPPGFLSALDQLLVLDLSYNSFKGELPLQQSFGNGSNGI 170

Query: 93  ----------------------------------------TGLIPSLAWNHSFCSMRLLD 112
                                                   TG IPS     S   +  LD
Sbjct: 171 FPIQTVDLSSNLLEGEILSSSVFLQGAFNLTSFNVSNNSFTGSIPSFMCTAS-PQLTKLD 229

Query: 113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISN 172
           FSYNDFS  +   L  CSRL   +AG++NL   +P +IY    LE+  L  N+LSG I N
Sbjct: 230 FSYNDFSGDLSQELSRCSRLSVLRAGFNNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDN 289

Query: 173 DIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLN 232
            I  LT L +LELYS  + G IP+DIGKL+ L  L L+ NNL GS+P S+ NCT L  LN
Sbjct: 290 GITRLTKLTLLELYSNHIEGEIPKDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLN 349

Query: 233 LMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIP 292
           L  N   G LSA +FS    L  +DL  N FTG F  T+ SC+++TA+R A N+L GQI 
Sbjct: 350 LRVNQLGGTLSAIDFSRFQSLSILDLGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQIS 409

Query: 293 PEIIKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG 334
           P++++L+SL                  IL GCK L+ L +  NF +E  P+      SDG
Sbjct: 410 PQVLELESLSFFTFSDNKMTNLTGALSILQGCKKLSTLIMAKNFYDETVPSNKDFLRSDG 469

Query: 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
           F +L+   +  C+LTG++P WL KL ++EV+ LS N+  G+IPGW G LP LFY  LS N
Sbjct: 470 FPSLQIFGIGACRLTGEIPAWLIKLQRVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSDN 529

Query: 395 NISGEFPKELSRLQPLVIEQ--NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLA 452
            ++GE PKEL +L+ L+ ++  +   RN  +LP F+ PN  +T+ QYN++  L PTI++ 
Sbjct: 530 FLTGELPKELFQLRALMSQKAYDATERNYLELPVFVNPNNVTTNQQYNQLSSLPPTIYIK 589

Query: 453 NNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS------- 505
            N+L+G IP E GQLK L++L+L  NNF+GSIP+++S LT LERLDLS N+LS       
Sbjct: 590 RNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSL 649

Query: 506 ------------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTTTNIG 553
                        N L GPIP+G Q  TFP ++FEGNP  C  +   S      +TT +G
Sbjct: 650 TGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSCDPTQHSTTKMG 709

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/582 (40%), Positives = 317/582 (54%), Gaps = 92/582 (15%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL------------- 92
           S+ N+  +S L+LS+N + GPLP   F  L  L I++LSYNS +GEL             
Sbjct: 109 SVQNIHRLSRLDLSYNRLSGPLPPGFFSTLDQLMILNLSYNSFNGELPLEQAFGNESNRF 168

Query: 93  ----------------------------------------TGLIPSLAWNHSFCSMRLLD 112
                                                   TG IPS     S   +  LD
Sbjct: 169 FSIQTLDLSSNLLEGEILRSSVYLQGTINLISFNVSNNSFTGPIPSFMCRSS-PQLSKLD 227

Query: 113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISN 172
           FSYNDFS  +   LG C RL   QAG++NL   +P +IY  + LE+  L  N+L+G I N
Sbjct: 228 FSYNDFSGHISQELGRCLRLTVLQAGFNNLSGVIPSEIYNLSELEQLFLPANQLTGKIDN 287

Query: 173 DIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLN 232
           +I  L  L  L LYS  L G IP DIG L++L+ L L+ NN++G++P S+ NCT L  LN
Sbjct: 288 NITRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINNINGTVPLSLANCTKLVKLN 347

Query: 233 LMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIP 292
           L  N   G L+   FS L  L+ +DL  N FTG+    + SC+ LTA+R A N+L G+I 
Sbjct: 348 LRVNQLGGGLTELEFSQLQSLKVLDLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTGEIS 407

Query: 293 PEIIKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG 334
           P++++L+SL                  IL GC+ L+ L L  NF +E  P+ +     DG
Sbjct: 408 PQVLELESLSFMGLSDNKLTNITGALSILQGCRKLSTLILAKNFYDETVPSKEDFLSPDG 467

Query: 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
           F  LR   +  C+L G++P WL  L K+EV+ LS N+  GSIPGW G LP LFY  LS N
Sbjct: 468 FPKLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLSDN 527

Query: 395 NISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANN 454
            ++GE PKEL +L+ L + Q     N  +LP FL PN  +T+ QYN+++   PTI++  N
Sbjct: 528 LLTGELPKELFQLRAL-MSQKITENNYLELPIFLNPNNVTTNQQYNKLYSFPPTIYIRRN 586

Query: 455 SLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS--------- 505
           +L+G IP E GQLK L++L+L  NN +GSIP+++S LT LERLDLS N+LS         
Sbjct: 587 NLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTN 646

Query: 506 ----------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDI 537
                      N+L+GPIPS GQ  TFP ++FEGNP  C  +
Sbjct: 647 LNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGV 688

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  276 bits (707), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 197/541 (36%), Positives = 277/541 (51%), Gaps = 63/541 (11%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG--------------- 90
           S+G L  I  LNLS N +   +P++ F+ L  L+ +DLS N LSG               
Sbjct: 95  SLGKLDEIRVLNLSRNFIKDSIPLSIFN-LKNLQTLDLSSNDLSGGIPTSINLPALQSFD 153

Query: 91  ----ELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSL 146
               +  G +PS    H+   +R++  + N F+       G C  L+    G ++L  ++
Sbjct: 154 LSSNKFNGSLPSHIC-HNSTQIRVVKLAVNYFAGNFTSGFGKCVLLEHLCLGMNDLTGNI 212

Query: 147 PDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKY 206
           P+D++    L    +  N+LSG +S +I NL+SL+ L++      G IP    +L  LK+
Sbjct: 213 PEDLFHLKRLNLLGIQENRLSGSLSREIRNLSSLVRLDVSWNLFSGEIPDVFDELPQLKF 272

Query: 207 LLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS 266
            L   N   G +P S+ N  +L  LNL  N  +G L   N + +  L ++DL  N F G 
Sbjct: 273 FLGQTNGFIGGIPKSLANSPSLNLLNLRNNSLSGRL-MLNCTAMIALNSLDLGTNRFNGR 331

Query: 267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL------------------ILMGCKN 308
               L  C+ L  + LA N   GQ+P      +SL                  IL  CKN
Sbjct: 332 LPENLPDCKRLKNVNLARNTFHGQVPESFKNFESLSYFSLSNSSLANISSALGILQHCKN 391

Query: 309 LNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLS 368
           L  L LT+NF  EA P+      S  F+ L+ + +A C+LTG +P WLS   +L++L LS
Sbjct: 392 LTTLVLTLNFHGEALPD----DSSLHFEKLKVLVVANCRLTGSMPRWLSSSNELQLLDLS 447

Query: 369 GNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFL 428
            N++TG+IP W G+  +LFY  LS N+ +GE PK L++L+ L       N   PD PFF+
Sbjct: 448 WNRLTGAIPSWIGDFKALFYLDLSNNSFTGEIPKSLTKLESLTSRNISVNEPSPDFPFFM 507

Query: 429 FPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQI 488
             N+++ + QYN+IFG  PTI L +N+LSG I  E G LK L+V DL  N  +GSIP+ +
Sbjct: 508 KRNESARALQYNQIFGFPPTIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSL 567

Query: 489 SQLTILERLDLSKNHLS-------------------ENNLQGPIPSGGQLHTFPPSSFEG 529
           S +T LE LDLS N LS                    NNL G IPSGGQ  TFP SSFE 
Sbjct: 568 SGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFES 627

Query: 530 N 530
           N
Sbjct: 628 N 628

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  275 bits (703), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 206/592 (34%), Positives = 299/592 (50%), Gaps = 65/592 (10%)

Query: 12  ISCHTEKSI---LRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLP 68
           ISC +  S+     N  G  + ++    KL  +    S+  L  +  LNL+HN + G + 
Sbjct: 69  ISCKSSVSLGLDDVNESGRVVELELGRRKLSGKLS-ESVAKLDQLKVLNLTHNSLSGSIA 127

Query: 69  INSFHFLTLLEIIDLSYNSLSGELTGLI--PSL----AWNHSF--------CS----MRL 110
            +  + L+ LE++DLS N  SG    LI  PSL     + +SF        C+    +R 
Sbjct: 128 ASLLN-LSNLEVLDLSSNDFSGLFPSLINLPSLRVLNVYENSFHGLIPASLCNNLPRIRE 186

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
           +D + N F   +P  +GNCS ++      +NL  S+P +++  ++L   +L  N+LSG +
Sbjct: 187 IDLAMNYFDGSIPVGIGNCSSVEYLGLASNNLSGSIPQELFQLSNLSVLALQNNRLSGAL 246

Query: 171 SNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKT 230
           S+ +  L++L  L++ S +  G IP    +L  L Y     N  +G +P S+ N  ++  
Sbjct: 247 SSKLGKLSNLGRLDISSNKFSGKIPDVFLELNKLWYFSAQSNLFNGEMPRSLSNSRSISL 306

Query: 231 LNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQ 290
           L+L  N  +G +   N S ++ L ++DL  N F+GS    L +C  L  +  A  +   Q
Sbjct: 307 LSLRNNTLSGQI-YLNCSAMTNLTSLDLASNSFSGSIPSNLPNCLRLKTINFAKIKFIAQ 365

Query: 291 IPPEIIKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKIS 332
           IP      +SL                  IL  C+NL  L LT+NF  E  P+      S
Sbjct: 366 IPESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLTLNFQKEELPSVP----S 421

Query: 333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS 392
             F+NL+ + +A CQL G VP WLS    L++L LS NQ++G+IP W G+L SLFY  LS
Sbjct: 422 LQFKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLS 481

Query: 393 QNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLA 452
            N   GE P  L+ LQ LV ++N      PD PFF   N N+   QYN+     P I L+
Sbjct: 482 NNTFIGEIPHSLTSLQSLVSKENAVEEPSPDFPFFKKKNTNAGGLQYNQPSSFPPMIDLS 541

Query: 453 NNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS------- 505
            NSL+G I  E G L+ L+VL+L NNN +G+IP  +S +T LE LDLS N+LS       
Sbjct: 542 YNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSL 601

Query: 506 ------------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTE 545
                        N L GPIP+G Q  TFP SSFEGN   C + A+    T+
Sbjct: 602 VKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEHASPCHITD 653

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  259 bits (663), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 192/573 (33%), Positives = 278/573 (48%), Gaps = 88/573 (15%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS- 104
           S+G LT +  L+LS N + G +P      L  L+++DLS+N LSG + G++  L    S 
Sbjct: 83  SLGELTELRVLDLSRNQLKGEVPA-EISKLEQLQVLDLSHNLLSGSVLGVVSGLKLIQSL 141

Query: 105 ----------------FCSMRLLDFSYNDFSSQVPPRLG--------------------- 127
                           F  + +L+ S N F  ++ P L                      
Sbjct: 142 NISSNSLSGKLSDVGVFPGLVMLNVSNNLFEGEIHPELCSSSGGIQVLDLSMNRLVGNLD 201

Query: 128 ---NCSR-LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVL 183
              NCS+ ++      + L   LPD +Y+   LE+ SL  N LSG +S ++ NL+ L  L
Sbjct: 202 GLYNCSKSIQQLHIDSNRLTGQLPDYLYSIRELEQLSLSGNYLSGELSKNLSNLSGLKSL 261

Query: 184 ELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLS 243
            +        IP   G LT L++L +  N  SG  P S+  C+ L+ L+L  N  +G+++
Sbjct: 262 LISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSIN 321

Query: 244 AYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL-- 301
             NF+  + L  +DL  N F+G    +L  C  +  L LA N+  G+IP     L+SL  
Sbjct: 322 -LNFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILSLAKNEFRGKIPDTFKNLQSLLF 380

Query: 302 ----------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG 345
                           +L  C+NL+ L L+ NF+ E  PN        GF NL  ++L  
Sbjct: 381 LSLSNNSFVDFSETMNVLQHCRNLSTLILSKNFIGEEIPNN-----VTGFDNLAILALGN 435

Query: 346 CQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELS 405
           C L GQ+P WL    KLEVL LS N   G+IP W G + SLFY   S N ++G  P  ++
Sbjct: 436 CGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPHWIGKMESLFYIDFSNNTLTGAIPVAIT 495

Query: 406 RLQPLVIEQNKFNR--NKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAE 463
            L+ L+      ++  +   +P ++  N++S    YN++    P+I+L NN L+G I  E
Sbjct: 496 ELKNLIRLNGTASQMTDSSGIPLYVKRNKSSNGLPYNQVSRFPPSIYLNNNRLNGTILPE 555

Query: 464 TGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHL------------------- 504
            G+LK L++LDL  NNF G+IP+ IS L  LE LDLS NHL                   
Sbjct: 556 IGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSV 615

Query: 505 SENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDI 537
           + N L G IPSGGQ ++FP SSFEGN   C  I
Sbjct: 616 AYNRLTGAIPSGGQFYSFPHSSFEGNLGLCRAI 648

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  188 bits (478), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 187/616 (30%), Positives = 265/616 (43%), Gaps = 130/616 (21%)

Query: 43  HLPS-IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAW 101
            +PS +G ++ + +L+L  N + G +P  S   L  L+ +DLS N+L+GE    IP   W
Sbjct: 254 EIPSQLGEMSQLQYLSLMANQLQGLIP-KSLADLGNLQTLDLSANNLTGE----IPEEFW 308

Query: 102 N-------------------HSFCS----MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAG 138
           N                    S CS    +  L  S    S ++P  L  C  LK     
Sbjct: 309 NMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLS 368

Query: 139 YSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI 198
            ++L  S+P+ ++    L +  LH N L G +S  I NLT+L  L LY   L G +P++I
Sbjct: 369 NNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEI 428

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL 258
             L  L+ L LY N  SG +P  + NCT+LK +++ GN F G +   +   L +L  + L
Sbjct: 429 SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPP-SIGRLKELNLLHL 487

Query: 259 YINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL----------------I 302
             N   G    +L +C  L  L LA NQL G IP     LK L                 
Sbjct: 488 RQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDS 547

Query: 303 LMGCKNLNVLFLTMNFMN---------------EATPNYDQNKIS---DGFQNLRAVSLA 344
           L+  +NL  + L+ N +N               + T N  +++I       QNL  + L 
Sbjct: 548 LISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLG 607

Query: 345 GCQLTGQVPLWLSKLTKLEVLLLSGNQITGS------------------------IPGWF 380
             QLTG++P  L K+ +L +L +S N +TG+                        IP W 
Sbjct: 608 KNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWL 667

Query: 381 GNLPSLFYFALSQNNISGEFPKEL---SRLQPLVIEQNKFNRNKPDL--------PFFLF 429
           G L  L    LS N      P EL   ++L  L ++ N  N + P             L 
Sbjct: 668 GKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLD 727

Query: 430 PNQNSTS-----HQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFL-NVLDLGNNNFAGS 483
            NQ S S      + ++++ LR    L+ NSL+G IP E GQL+ L + LDL  NNF G 
Sbjct: 728 KNQFSGSLPQAMGKLSKLYELR----LSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGD 783

Query: 484 IPNQISQLTILERLDLSKNHL-------------------SENNLQGPIPSGGQLHTFPP 524
           IP+ I  L+ LE LDLS N L                   S NNL G +    Q   +P 
Sbjct: 784 IPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK--QFSRWPA 841

Query: 525 SSFEGNPEFCSDIANR 540
            SF GN   C    +R
Sbjct: 842 DSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  185 bits (470), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 168/536 (31%), Positives = 241/536 (44%), Gaps = 85/536 (15%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
           +L  I  LNL++  + G      F  L  L  +DLS N  SG ++ L     W   F  +
Sbjct: 91  SLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPL-----WGR-FSKL 144

Query: 109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSG 168
              D S N    ++PP LG+ S L +     + L  S+P +I     + E +++ N L+G
Sbjct: 145 EYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTG 204

Query: 169 FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNL 228
            I +   NLT L+ L L+   L GSIP +IG L NL+ L L RNNL+G +PSS  N  N+
Sbjct: 205 PIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNV 264

Query: 229 KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE 288
             LN+  N  +G +       ++ L+T+ L+ N  TG    TL + + L  L L  NQL 
Sbjct: 265 TLLNMFENQLSGEIPP-EIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLN 323

Query: 289 GQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQL 348
           G IPPE+ +++S+I                                      + ++  +L
Sbjct: 324 GSIPPELGEMESMI-------------------------------------DLEISENKL 346

Query: 349 TGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSR-- 406
           TG VP    KLT LE L L  NQ++G IP    N   L    L  NN +G  P  + R  
Sbjct: 347 TGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGG 406

Query: 407 -LQPLVIEQNKFN-------RNKPDLPFFLFPNQNSTSHQYNRIFGLRPT---IFLANNS 455
            L+ L ++ N F        R+   L    F   NS S   +  FG+ PT   I L+NN+
Sbjct: 407 KLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKG-NSFSGDISEAFGVYPTLNFIDLSNNN 465

Query: 456 LSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN------------- 502
             G++ A   Q + L    L NN+  G+IP +I  +T L +LDLS N             
Sbjct: 466 FHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNI 525

Query: 503 ------HLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTTTNI 552
                  L+ N L G IPSG +L T        N E+    +NR S+  P T  N+
Sbjct: 526 NRISKLQLNGNRLSGKIPSGIRLLT--------NLEYLDLSSNRFSSEIPPTLNNL 573

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  183 bits (464), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 182/613 (29%), Positives = 284/613 (46%), Gaps = 114/613 (18%)

Query: 36  NKLVQRYHL-PSIGNLTHISHLNLSHNHVHGPLPINSF--HFLTLLEIIDLSYNSLSGEL 92
           NKLV +    PS  +L  ++ ++LS+N +   +P  SF   F   L+ +DL++N+LSG+ 
Sbjct: 161 NKLVGKLGFAPS--SLQSLTTVDLSYNILSDKIP-ESFISDFPASLKYLDLTHNNLSGDF 217

Query: 93  TGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYA 152
           + L   +  N +F S+   + S + F    P  L NC  L++     +NL   +P+  Y 
Sbjct: 218 SDLSFGICGNLTFFSLSQNNLSGDKF----PITLPNCKFLETLNISRNNLAGKIPNGEYW 273

Query: 153 AA--SLEEPSLHFNKLSGFISNDIINLT-SLLVLELYSKELIGSIPRD------------ 197
            +  +L++ SL  N+LSG I  ++  L  +L++L+L      G +P              
Sbjct: 274 GSFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNL 333

Query: 198 -------------IGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSA 244
                        + K+T + YL +  NN+SGS+P S+ NC+NL+ L+L  N F GN+ +
Sbjct: 334 GNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPS 393

Query: 245 YNFSVLSQ--LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL- 301
              S+ S   LE I +  N  +G+  + L  C+ L  + L+ N+L G IP EI  L +L 
Sbjct: 394 GFCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLS 453

Query: 302 ----------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG 345
                           + +   NL  L L  N +  + P      IS    N+  +SL+ 
Sbjct: 454 DLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE----SISR-CTNMIWISLSS 508

Query: 346 CQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELS 405
            +LTG++P  +  L+KL +L L  N ++G++P   GN  SL +  L+ NN++G+ P EL+
Sbjct: 509 NRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELA 568

Query: 406 RLQPLVI------EQNKFNRNKPDLP------FFLFPNQNST---------SHQYNRIF- 443
               LV+      +Q  F RN+             F    +          S    RI+ 
Sbjct: 569 SQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYS 628

Query: 444 GLRPTIFLAN----------NSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTI 493
           G+    F AN          N++SG IP   G + +L VL+LG+N   G+IP+    L  
Sbjct: 629 GMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKA 688

Query: 494 LERLDLSKNHL-------------------SENNLQGPIPSGGQLHTFPPSSFEGNPEFC 534
           +  LDLS N+L                   S NNL GPIP GGQL TFP S +  N   C
Sbjct: 689 IGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLC 748

Query: 535 SDIANRSSTTEPR 547
             +  R   + PR
Sbjct: 749 G-VPLRPCGSAPR 760

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 161/528 (30%), Positives = 240/528 (45%), Gaps = 63/528 (11%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL------------ 92
           P I NL  + HLNLS+N  +G  P      L  L ++DL  N+L+G+L            
Sbjct: 111 PQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRH 170

Query: 93  --------TGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR 144
                   +G IP  A   ++  +  L  S N+ + ++PP +GN + L+    GY N   
Sbjct: 171 LHLGGNYFSGKIP--ATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAFE 228

Query: 145 -SLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTN 203
             LP +I   + L         L+G I  +I  L  L  L L      G+I +++G +++
Sbjct: 229 NGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLISS 288

Query: 204 LKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMF 263
           LK + L  N  +G +P+S     NL  LNL  N   G +  +    + +LE + L+ N F
Sbjct: 289 LKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEF-IGEMPELEVLQLWENNF 347

Query: 264 TGSFLLTLTSCRLLTALRLACNQLEGQIPPEII---KLKSLILMG-------------CK 307
           TGS    L     L  L L+ N+L G +PP +    +L +LI +G             C+
Sbjct: 348 TGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSIPDSLGKCE 407

Query: 308 NLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLT-KLEVLL 366
           +L  + +  NF+N + P     K   G   L  V L    LTG++P+    ++  L  + 
Sbjct: 408 SLTRIRMGENFLNGSIP-----KELFGLPKLSQVELQDNYLTGELPISGGGVSGDLGQIS 462

Query: 367 LSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPF 426
           LS NQ++GS+P   GNL  +    L  N  SG  P E+ RLQ L         +K D   
Sbjct: 463 LSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQL---------SKLDFSH 513

Query: 427 FLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPN 486
            LF  + +      ++      + L+ N LSG IP E   +K LN L+L  N+  GSIP 
Sbjct: 514 NLFSGRIAPEISRCKLLTF---VDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPV 570

Query: 487 QISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFC 534
            I+ +  L  +D S      NNL G +PS GQ   F  +SF GN   C
Sbjct: 571 TIASMQSLTSVDFSY-----NNLSGLVPSTGQFSYFNYTSFVGNSHLC 613

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  176 bits (446), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 162/504 (32%), Positives = 246/504 (48%), Gaps = 57/504 (11%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-------------- 91
           S+G+   +  L+LS N + G +P  S   L  LE + L+ N L+G+              
Sbjct: 124 SLGDCLGLKVLDLSSNGLVGDIPW-SLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSL 182

Query: 92  ------LTGLIPSLAWNHSFCSMRLLDFSYN-DFSSQVPPRLGNCSRLKSFQAGYSNLLR 144
                 LTG IP+     S   + ++    N + S Q+P  +G+CS L       +++  
Sbjct: 183 ILFDNLLTGSIPTELGKLS--GLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSG 240

Query: 145 SLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNL 204
           +LP  +     LE  S++   +SG I +D+ N + L+ L LY   L GSIPR+IG+LT L
Sbjct: 241 NLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKL 300

Query: 205 KYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT 264
           + L L++N+L G +P  + NC+NLK ++L  NL +G++ + +   LS LE   +  N F+
Sbjct: 301 EQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPS-SIGRLSFLEEFMISDNKFS 359

Query: 265 GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATP 324
           GS   T+++C  L  L+L  NQ+ G IP E+  L  L L         F   N +  + P
Sbjct: 360 GSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTL--------FFAWSNQLEGSIP 411

Query: 325 NYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP 384
                 ++D   +L+A+ L+   LTG +P  L  L  L  LLL  N ++G IP   GN  
Sbjct: 412 ----PGLAD-CTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCS 466

Query: 385 SLFYFALSQNNISGEFPKELSRLQP---LVIEQNKFNRNKPD-------LPFFLFPN--- 431
           SL    L  N I+GE P  +  L+    L    N+ +   PD       L      N   
Sbjct: 467 SLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSL 526

Query: 432 QNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQL 491
           + S  +  + + GL+  + ++ N  SG+IPA  G+L  LN L L  N F+GSIP  +   
Sbjct: 527 EGSLPNPVSSLSGLQ-VLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMC 585

Query: 492 TILERLDLSKNHLSENNLQGPIPS 515
           + L+ LDL  N LS     G IPS
Sbjct: 586 SGLQLLDLGSNELS-----GEIPS 604

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	555
359482434	1280	PREDICTED: tyrosine-sulfated glycopeptid	0.902	0.391	0.489	1e-133
255537393	1087	Leucine-rich repeat receptor protein kin	0.913	0.466	0.482	1e-131
224074123	1050	predicted protein [Populus trichocarpa]	0.906	0.479	0.464	1e-126
224138536	1092	predicted protein [Populus trichocarpa]	0.906	0.460	0.456	1e-124
219718185	1085	receptor kinase [Gossypium barbadense]	0.873	0.447	0.489	1e-123
449436222	1095	PREDICTED: tyrosine-sulfated glycopeptid	0.906	0.459	0.440	1e-117
255577318	717	Phytosulfokine receptor precursor, putat	0.879	0.680	0.475	1e-117
147832546	1188	hypothetical protein VITISV_009907 [Viti	0.859	0.401	0.451	1e-116
297841971	1096	hypothetical protein ARALYDRAFT_476358 [	0.915	0.463	0.416	1e-111
356504209	1076	PREDICTED: tyrosine-sulfated glycopeptid	0.908	0.468	0.435	1e-110

>gi|359482434|ref|XP_002270860.2| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Vitis vinifera]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 290/593 (48%), Positives = 374/593 (63%), Gaps = 92/593 (15%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL------------ 92
           PS+ NLT +SHLNLS N   G +P+  F   + LEI+D+S+N LSGEL            
Sbjct: 311 PSLANLTLLSHLNLSRNSFSGSVPLELF---SSLEILDVSFNRLSGELPLSLSQSPNNSG 367

Query: 93  -------------TGLIPS----LAWN--------HSFCS------------MRLLDFSY 115
                         G+I S    LA N        +SF              +RL+DFSY
Sbjct: 368 VSLQTIDLSSNHFYGVIQSSFLQLARNLTNFNVSNNSFTDSIPSDICRNSPLVRLMDFSY 427

Query: 116 NDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDII 175
           N FS +VP  LG+CS+L+  +AG+++L   +P+DIY+AA+L E SL  N LSG IS+ I+
Sbjct: 428 NKFSGRVPLGLGDCSKLEVLRAGFNSLSGLIPEDIYSAAALREISLPVNSLSGPISDAIV 487

Query: 176 NLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG 235
           NL++L VLELYS +LIG++P+D+GKL  LK LLL+ N L+G LP+S+MNCT L TLNL  
Sbjct: 488 NLSNLTVLELYSNQLIGNLPKDMGKLFYLKRLLLHINKLTGPLPASLMNCTKLTTLNLRV 547

Query: 236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEI 295
           NLF G++S   FS L +L T+DL  N FTG+  ++L SC+ LTA+RLA N+LEGQI P+I
Sbjct: 548 NLFEGDISVIKFSTLQELSTLDLGDNNFTGNLPVSLYSCKSLTAVRLANNRLEGQILPDI 607

Query: 296 IKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQN 337
           + L+SL                  +LMGC+NL+ + LT NF NE  P+ D    S+GFQ 
Sbjct: 608 LALQSLSFLSISKNNLTNITGAIRMLMGCRNLSTVILTQNFFNERLPDDDSILDSNGFQR 667

Query: 338 LRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397
           L+ + L GC+ TGQVP WL+KL+KLEVL LS NQITGSIPGW G LPSLFY  LS N IS
Sbjct: 668 LQVLGLGGCRFTGQVPTWLAKLSKLEVLDLSLNQITGSIPGWLGTLPSLFYIDLSSNLIS 727

Query: 398 GEFPKELSRLQPLVIEQ--NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNS 455
           GEFPKE+ RL  L  E+   + +++  +LP F+ PN N+T+ QY ++  L P I+L NNS
Sbjct: 728 GEFPKEIIRLPRLTSEEAATEVDQSYLELPVFVMPN-NATNLQYKQLSNLPPAIYLRNNS 786

Query: 456 LSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS---------- 505
           LSG IP E GQLKF+++LDL  NNF+GSIP+QIS LT LE+LDLS NHLS          
Sbjct: 787 LSGNIPTEIGQLKFIHILDLSYNNFSGSIPDQISNLTNLEKLDLSGNHLSGEIPGSLRSL 846

Query: 506 ---------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTT 549
                     N+L+G IPSGGQ  TFP SSFEGNP  C     RS + +P TT
Sbjct: 847 HFLSSFNVANNSLEGAIPSGGQFDTFPNSSFEGNPGLCGPPLQRSCSNQPGTT 899

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537393|ref|XP_002509763.1| Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis] gi|223549662|gb|EEF51150.1| Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 292/605 (48%), Positives = 361/605 (59%), Gaps = 98/605 (16%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL------------ 92
           PS+ NLT++SHLNLSHN + GP+P   F +L  L+I+DLSYN L+GEL            
Sbjct: 118 PSLANLTYLSHLNLSHNRLFGPIPHGFFSYLDNLQILDLSYNRLTGELPSNDNNTNVAIQ 177

Query: 93  -----------------------------------TGLIPSLAWNHSFCSMRLLDFSYND 117
                                              TG IPS     SF SM +LDFSYND
Sbjct: 178 LVDLSSNQLSGTIPSNSILQVARNLSSFNVSNNSFTGQIPSNICTVSFSSMSILDFSYND 237

Query: 118 FSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINL 177
           FS  +P  +G CS L+ F AG++NL  ++PDDIY A  LE+ SL  N LSG IS+ ++NL
Sbjct: 238 FSGSIPFGIGKCSNLRIFSAGFNNLSGTIPDDIYKAVLLEQLSLPLNYLSGTISDSLVNL 297

Query: 178 TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNL 237
            +L + +LYS  L G IP+DIGKL+ L+ L L+ NNL+G+LP+S+MNCT L TLNL  NL
Sbjct: 298 NNLRIFDLYSNNLTGLIPKDIGKLSKLEQLQLHINNLTGTLPASLMNCTKLVTLNLRVNL 357

Query: 238 FAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIK 297
             G L A++FS L QL  +DL  N F G+    L +C+ L A+RLA NQL GQI PEI  
Sbjct: 358 LEGELEAFDFSKLLQLSILDLGNNNFKGNLPTKLYACKSLKAVRLAYNQLGGQILPEIQA 417

Query: 298 LKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKI-SDGFQNL 338
           L+SL                  I+MGCKNL  L L++NFMNE  P  D   I S+GFQNL
Sbjct: 418 LESLSFLSVSSNNLTNLTGAIQIMMGCKNLTTLILSVNFMNETIP--DGGIIDSNGFQNL 475

Query: 339 RAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG 398
           + ++L    L+GQVP WL+KL  LEVL LS N+ITG IP W GNLPSLFY  LS+N +SG
Sbjct: 476 QVLALGASGLSGQVPTWLAKLKNLEVLDLSLNRITGLIPSWLGNLPSLFYVDLSRNFLSG 535

Query: 399 EFPKELSRLQPLVIEQNK--FNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSL 456
           EFPKEL+ L  L  +  K   +R+   LP F  PN N+T  QYN++  L P I+L NN L
Sbjct: 536 EFPKELAGLPTLAFQGAKELIDRSYLPLPVFAQPN-NATYQQYNQLSNLPPAIYLGNNHL 594

Query: 457 SGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS----------- 505
           SG IP E GQLKFL+VLDL NNNF+G+IP+Q+S LT LE+LDLS N LS           
Sbjct: 595 SGDIPIEIGQLKFLHVLDLSNNNFSGNIPDQLSNLTNLEKLDLSGNQLSGEIPASLRGLH 654

Query: 506 --------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSST--------TEPRTT 549
                   +NNLQGPIPSGGQ  TFP SSF GNP  C  I  RS +        T P  +
Sbjct: 655 FLSSFSVRDNNLQGPIPSGGQFDTFPISSFVGNPGLCGPILQRSCSNPSGSVHPTNPHKS 714

Query: 550 TNIGL 554
           TN  L
Sbjct: 715 TNTKL 719

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074123|ref|XP_002304261.1| predicted protein [Populus trichocarpa] gi|222841693|gb|EEE79240.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 274/590 (46%), Positives = 351/590 (59%), Gaps = 87/590 (14%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL------------ 92
           P + NLT ++HLNLSHN +HGPLP+  F  L+ L+++DLSYN L GEL            
Sbjct: 80  PYLANLTSLTHLNLSHNRLHGPLPVGFFSSLSGLQVLDLSYNRLDGELPSVDTNNLPIKI 139

Query: 93  -----------------------------------TGLIPSLAWNHSFCSMRLLDFSYND 117
                                              TG IPS     S  S+ LLDFS ND
Sbjct: 140 VDLSSNHFDGELSHSNSFLRAAWNLTRLNVSNNSFTGQIPSNVCQISPVSITLLDFSSND 199

Query: 118 FSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINL 177
           FS  + P LG CS+L+ F+AG++NL   +PDD+Y A SL   SL  N LSG +S+ ++NL
Sbjct: 200 FSGNLTPELGECSKLEIFRAGFNNLSGMIPDDLYKATSLVHFSLPVNYLSGPVSDAVVNL 259

Query: 178 TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNL 237
           T+L VLELYS +  G IPRDIGKL+ L+ LLL+ N+L+G LP S+MNCT+L  LNL  N 
Sbjct: 260 TNLKVLELYSNKFSGRIPRDIGKLSKLEQLLLHINSLAGPLPPSLMNCTHLVKLNLRVNF 319

Query: 238 FAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIK 297
            AGNLS  +FS L +L T+DL  N F G F  +L SC  L A+RLA NQ+EGQI P+I  
Sbjct: 320 LAGNLSDLDFSTLPKLTTLDLGNNNFAGIFPTSLYSCTSLVAVRLASNQIEGQISPDITA 379

Query: 298 LKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLR 339
           LKSL                  ILMGCK+L  L L+ N M+E   +      S GFQNL+
Sbjct: 380 LKSLSFLSISANNLTNITGAIRILMGCKSLTALILSNNTMSEGILDDGNTLDSTGFQNLQ 439

Query: 340 AVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGE 399
            ++L  C+L+GQVP WL+ +T L+V+ LS NQI GSIP W G+L SLFY  LS N +SG 
Sbjct: 440 VLALGRCKLSGQVPSWLASITSLQVIDLSYNQIRGSIPRWLGDLSSLFYLDLSNNLLSGG 499

Query: 400 FPKELSRLQPLVIEQ--NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLS 457
           FP EL+ L+ L  ++   +  R+  +LP F+ P  N+T+ QYN++  L P I+L NN+LS
Sbjct: 500 FPLELAGLRALTSQEAVKRVERSYLELPVFVKPT-NATNLQYNQLSSLPPAIYLKNNNLS 558

Query: 458 GRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS------------ 505
           G IP + GQLKFL+VLDL +N F G+IP+Q+S LT LE+LDLS N LS            
Sbjct: 559 GNIPVQIGQLKFLHVLDLSDNRFFGNIPDQLSNLTNLEKLDLSGNDLSGEIPTSLSGLHF 618

Query: 506 -------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRT 548
                   N LQGPIPSGGQ  TFP SSF GNP  C  +  RS ++ P T
Sbjct: 619 LSLFNVANNELQGPIPSGGQFDTFPSSSFVGNPGLCGQVLQRSCSSSPGT 668

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138536|ref|XP_002326627.1| predicted protein [Populus trichocarpa] gi|222833949|gb|EEE72426.1| predicted protein [Populus trichocarpa]

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/591 (45%), Positives = 354/591 (59%), Gaps = 88/591 (14%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL------------ 92
           PS+ NLT ++HLNLSHN ++G LP+  F  L  L+++DLSYN L GE+            
Sbjct: 121 PSLANLTSLTHLNLSHNRLYGSLPVRFFSSLRSLQVLDLSYNRLDGEIPSLDTNNLIPIK 180

Query: 93  ------------------------------------TGLIPSLAWNHSFCSMRLLDFSYN 116
                                                G IPS   N S  S  LLDFS N
Sbjct: 181 IVDLSSNHFYGELSQSNSFLQTACNLTRLNVSNNSFAGQIPSNICNISSGSTTLLDFSNN 240

Query: 117 DFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIIN 176
           DFS  + P  G CS+L+ F+AG++NL   +PDD+Y A SL   SL  N+LSG IS+ ++N
Sbjct: 241 DFSGNLTPGFGECSKLEIFRAGFNNLSGMIPDDLYKATSLVHFSLPVNQLSGQISDAVVN 300

Query: 177 LTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGN 236
           LTSL VLELYS +L G IPRDIGKL+ L+ LLL+ N+L+G LP S+MNCTNL  LN+  N
Sbjct: 301 LTSLRVLELYSNQLGGRIPRDIGKLSKLEQLLLHINSLTGPLPPSLMNCTNLVKLNMRVN 360

Query: 237 LFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEII 296
             AGNLS  +FS L  L T+DL  N FTG+F  +L SC  L A+RLA NQ+EGQI P+I+
Sbjct: 361 FLAGNLSDSDFSTLRNLSTLDLGNNKFTGTFPTSLYSCTSLVAVRLASNQIEGQILPDIL 420

Query: 297 KLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNL 338
            L+SL                  ILMGCK+L+ L L+ N M+E   +      S GFQNL
Sbjct: 421 ALRSLSFLSISANNLTNITGAIRILMGCKSLSTLILSNNTMSEGILDDGNTLDSTGFQNL 480

Query: 339 RAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG 398
           + ++L  C+L+GQVP WL+ ++ L+V+ LS NQI GSIPGW  NL SLFY  LS N +SG
Sbjct: 481 QVLALGRCKLSGQVPSWLANISSLQVIDLSYNQIRGSIPGWLDNLSSLFYLDLSNNLLSG 540

Query: 399 EFPKELSRLQPLVIEQ--NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSL 456
           EFP +L+ L+ L  ++   + +R+  +LP F+ P  N+T+ QYN++  L P I+L NN+L
Sbjct: 541 EFPLKLTGLRTLTSQEVIKQLDRSYLELPVFVMPT-NATNLQYNQLSNLPPAIYLGNNNL 599

Query: 457 SGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS----------- 505
           SG IP + GQL FL+VLDL +N F+G+IP+++S L  LE+LDLS N LS           
Sbjct: 600 SGNIPVQIGQLNFLHVLDLSDNRFSGNIPDELSNLANLEKLDLSGNLLSGEIPTSLKGLH 659

Query: 506 --------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRT 548
                    N+LQGPIPSGGQ  TFP SSF GN   C  +  RS ++ P T
Sbjct: 660 FLSSFSVANNDLQGPIPSGGQFDTFPSSSFTGNQWLCGQVLQRSCSSSPGT 710

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219718185|gb|ACL35341.1| receptor kinase [Gossypium barbadense]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/531 (48%), Positives = 336/531 (63%), Gaps = 46/531 (8%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
           +L+ I  L+LS NH  G +  NS      L I ++S N+L+G+    +PS  W     S+
Sbjct: 168 SLSPIQTLDLSSNHFSGTIRSNSVLQAVNLTIFNVSNNTLTGQ----VPS--WICINTSL 221

Query: 109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSG 168
            +LD SYN    ++P  L  CS+L+ F+AG++NL  +LP DIY+ +SLE+ SL  N  SG
Sbjct: 222 TILDLSYNKLDGKIPTGLDKCSKLQIFRAGFNNLSGTLPADIYSVSSLEQLSLPLNHFSG 281

Query: 169 FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNL 228
            I + I+ L  L +LEL+S E  G IP+DIG+L+ L+ LLL+ NN +G LP S+M+CTNL
Sbjct: 282 GIRDAIVQLDKLTILELFSNEFEGPIPKDIGQLSKLEQLLLHINNFTGYLPPSLMSCTNL 341

Query: 229 KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE 288
            TLNL  N   G+LSA+NFS L +L T+DL  N FTG+  L+L SC+ LTA+RLA NQLE
Sbjct: 342 VTLNLRVNHLEGDLSAFNFSTLQRLNTLDLSNNNFTGTLPLSLYSCKSLTAVRLASNQLE 401

Query: 289 GQIPPEIIKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNK 330
           GQI P I+ L+SL                  IL   KNL  L LT NFMNEA PN D+N 
Sbjct: 402 GQISPAILALRSLSFLSISTNKLTNITGAIRILKEVKNLTTLILTKNFMNEAIPN-DENI 460

Query: 331 ISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFA 390
           I +GFQNL+ ++L GC  TGQVP WL+KL  LEVL LS N+I+G IP W G+L +LFY  
Sbjct: 461 IGEGFQNLQILALGGCNFTGQVPRWLAKLKNLEVLDLSQNRISGLIPSWLGSLSNLFYID 520

Query: 391 LSQNNISGEFPKELSRLQPLVIEQ--NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPT 448
           LS N ISGEFPKEL+ L  L  ++  N+ +R+  +LP F+ PN  ++   YN++  L P 
Sbjct: 521 LSANLISGEFPKELTSLWALATQESNNQVDRSYLELPVFVMPNNATSQQLYNQLSSLPPA 580

Query: 449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS--- 505
           I+L NN+LSG IP   GQL+FL+VLDL  N+F+GSIP ++S LT LE+LDLS N LS   
Sbjct: 581 IYLRNNNLSGNIPEAIGQLRFLHVLDLSQNDFSGSIPEELSNLTNLEKLDLSGNRLSGQI 640

Query: 506 ----------------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANR 540
                            NNLQGPIPSGGQ  TF  SSFEGNP  C  I  R
Sbjct: 641 PESLRGLYFLSSFSVAYNNLQGPIPSGGQFDTFTSSSFEGNPGLCGSIVQR 691

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436222|ref|XP_004135892.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Cucumis sativus] gi|449491098|ref|XP_004158799.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Cucumis sativus]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 268/609 (44%), Positives = 354/609 (58%), Gaps = 106/609 (17%)

Query: 41  RYHLPS-IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-------- 91
           R   PS + NLT +SHL+LSHN  +G LP + F  L+ L+ ++LSYN L+G+        
Sbjct: 112 RGEFPSTLTNLTFLSHLDLSHNRFYGSLPSDFFKSLSHLKELNLSYNLLTGQLPPLPSPS 171

Query: 92  --------------------------------------------LTGLIPSLAWNHSFC- 106
                                                        TGLIP+     SFC 
Sbjct: 172 SSSGLLIETLDLSSNRFYGEIPASFIQQVAISGSLTSFNVRNNSFTGLIPT-----SFCV 226

Query: 107 ------SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPS 160
                 S+RLLDFS N F   +P  L  C  L+ F+AG+++L   +P D+Y   +L+E S
Sbjct: 227 NTTSISSVRLLDFSNNGFGGGIPQGLEKCHNLEVFRAGFNSLTGPIPSDLYNVLTLKELS 286

Query: 161 LHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS 220
           LH N  SG I + I+NLT+L +LEL+S  LIG IP DIGKL+NL+ L L+ NNL+GSLP 
Sbjct: 287 LHVNHFSGNIGDGIVNLTNLRILELFSNSLIGPIPTDIGKLSNLEQLSLHINNLTGSLPP 346

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280
           S+MNCTNL  LNL  N   G+LS  NFS L  L T+DL  NMFTG+   TL SC+ L A+
Sbjct: 347 SLMNCTNLTLLNLRVNKLQGDLSNVNFSRLVGLTTLDLGNNMFTGNIPSTLYSCKSLKAV 406

Query: 281 RLACNQLEGQIPPEIIKLKSLI------------------LMGCKNLNVLFLTMNFMNEA 322
           RLA NQL G+I  EI  L+SL                   LMGCKNL  L ++ +++ EA
Sbjct: 407 RLASNQLSGEITHEIAALQSLSFISVSKNNLTNLSGALRNLMGCKNLGTLVMSGSYVGEA 466

Query: 323 TPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGN 382
            P+ D    ++ FQN++A+++   QLTG+VP W+ KL  LEVL LS N++ GSIP W G+
Sbjct: 467 LPDEDMIVDANTFQNIQALAIGASQLTGKVPSWIQKLRSLEVLDLSFNRLVGSIPEWLGD 526

Query: 383 LPSLFYFALSQNNISGEFPKELSRLQPLVIEQ--NKFNRNKPDLPFFLFPNQNSTSHQYN 440
            PSLFY  LS N ISG+FP +L RLQ L+ +Q  +   ++   LP F+ P+ N+T+ QYN
Sbjct: 527 FPSLFYIDLSNNRISGKFPTQLCRLQALMSQQILDPAKQSFLALPVFVAPS-NATNQQYN 585

Query: 441 RIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLS 500
           ++  L P I+L NN++SG IP E GQLKF+++LDL NN+F+GSIP+ IS L+ LERLDLS
Sbjct: 586 QLSSLPPAIYLGNNTISGPIPLEIGQLKFIHILDLSNNSFSGSIPDTISNLSNLERLDLS 645

Query: 501 KNHLSE-------------------NNLQGPIPSGGQLHTFPPSSFEGNPEFCS-DIANR 540
            NHL+                    N LQGPIPSGGQ  TFP SS+EGN   C   I  R
Sbjct: 646 HNHLTGEIPHSLKGLHFLSWFSVAFNELQGPIPSGGQFDTFPSSSYEGNSGLCGPPIVQR 705

Query: 541 SSTTEPRTT 549
           S +++ R T
Sbjct: 706 SCSSQTRIT 714

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577318|ref|XP_002529540.1| Phytosulfokine receptor precursor, putative [Ricinus communis] gi|223530988|gb|EEF32843.1| Phytosulfokine receptor precursor, putative [Ricinus communis]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 280/589 (47%), Positives = 344/589 (58%), Gaps = 101/589 (17%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL------------ 92
           PSI NLTH+S LNLSHN   G + +  F  L  LEI+DLSYN L G+L            
Sbjct: 82  PSIWNLTHLSQLNLSHNRFSGSV-VEFFSPLLALEILDLSYNLLHGKLPSFFLSRNIKLV 140

Query: 93  --------------------------------TGLIPSLAWNHSFCSMRLLDFSYNDFSS 120
                                           TG IPS   ++S   ++LLDFSYNDF  
Sbjct: 141 DLSSNLFYGEIPSRLFQQAENLATFNISNNSFTGSIPSSICSNSSFWVKLLDFSYNDFGG 200

Query: 121 QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSL 180
            +P RLG C +L+ F+AGY+NL  SLP D++ A  L+E SLH N LSG ISNDI NLT+L
Sbjct: 201 LIPNRLGQCYQLQVFRAGYNNLFGSLPQDMFKAIGLQEISLHSNGLSGPISNDITNLTNL 260

Query: 181 LVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG 240
            VLELYS EL GSIP DIGKL+NL+ LLL+ NNL+GSLP+S+ NCTNL TLNL  N   G
Sbjct: 261 KVLELYSNELTGSIPPDIGKLSNLEQLLLHVNNLTGSLPASLANCTNLVTLNLRFNYLEG 320

Query: 241 NLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKS 300
           +L+A+NFS L  L  +DL  N FTGS  +TL SC+ LTA+RL+ NQ EGQI PEII LKS
Sbjct: 321 DLAAFNFSKLLNLRILDLGNNNFTGSLPVTLYSCQSLTAVRLSFNQFEGQILPEIIALKS 380

Query: 301 L------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVS 342
           L                  ILM  KNL+ L L+ NF NE  PN D+   SDGF       
Sbjct: 381 LSFLSLSYNNLINVTGAIKILMKLKNLHTLLLSKNFWNEPVPNDDEIWQSDGFI------ 434

Query: 343 LAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPK 402
                      + ++ L KLEVL LS N+I GSIP WF  LPSLFY  L  N ISGEFP+
Sbjct: 435 -----------IXVTDLQKLEVLDLSQNKIKGSIPNWFVTLPSLFYIGLDNNLISGEFPR 483

Query: 403 ELSRLQPLVIEQN-KFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIP 461
           EL+ L  L    + + +R+   +P  +   +N+   QY+++  L P I+L NNS+SG IP
Sbjct: 484 ELNLLPALAKGASYQIDRSYLVMP-VIVKTKNTNYLQYHKVSYLPPAIYLGNNSISGNIP 542

Query: 462 AETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHL----------------- 504
            E GQLKFL  LDL NNNF+G+IP ++S+LT LE+LDLS N L                 
Sbjct: 543 VELGQLKFLQELDLSNNNFSGNIPEELSKLTNLEKLDLSGNRLTGKIPESLRGLHFLSSF 602

Query: 505 --SENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTTTN 551
             +ENNLQG IPSGGQ  TFP SSF GNP  C    N   + +P TTT+
Sbjct: 603 SVAENNLQGLIPSGGQFDTFPLSSFIGNPGLCGSTVNHPCSYQPGTTTH 651

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832546|emb|CAN68301.1| hypothetical protein VITISV_009907 [Vitis vinifera]

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 268/593 (45%), Positives = 352/593 (59%), Gaps = 116/593 (19%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELT----------- 93
           PS+ NLT +SHLNLS N   G +P+  F   + LEI+D+S+N LSGEL            
Sbjct: 109 PSLANLTLLSHLNLSRNSFSGSVPLELF---SSLEILDVSFNRLSGELPVSLSQSPNNSG 165

Query: 94  --------------GLIPS----LAWN--------HSFCS------------MRLLDFSY 115
                         G+I S    LA N        +SF              +RL+DFSY
Sbjct: 166 VSLQTIDLSSNHFYGVIQSSFLQLARNLTNFNVSNNSFTDSIPSDICRNSPLVRLMDFSY 225

Query: 116 NDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDII 175
           N FS +VP  LG+CS+L+  +AG+++L   +P+DIY+AA+L E SL  N LSG IS+ I+
Sbjct: 226 NKFSGRVPLGLGDCSKLEVLRAGFNSLSGLIPEDIYSAAALREISLPVNSLSGPISDAIV 285

Query: 176 NLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG 235
           NL++L VLELYS +LIG++P+D+GKL  LK LLL+ N L+G LP+S+M+CT L TLNL  
Sbjct: 286 NLSNLTVLELYSNQLIGNLPKDMGKLFYLKRLLLHINKLTGPLPASLMDCTKLTTLNLRV 345

Query: 236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEI 295
           NLF G++S   FS L +L T+DL  N FTG+  ++L SC+ LTA+RLA N+LEGQI P+I
Sbjct: 346 NLFEGDISVIKFSTLQELSTLDLGDNNFTGNLPVSLYSCKSLTAVRLANNRLEGQILPDI 405

Query: 296 IKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQN 337
           + L+SL                  +LMGC+NL+ + LT NF NE  P+ D    S+GFQ 
Sbjct: 406 LALQSLSFLSISKNNLTNITGAIRMLMGCRNLSTVILTQNFFNERLPDDDSILDSNGFQR 465

Query: 338 LRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397
           L+ + L GC+ TG +P WL                        G LPSLFY  LS N IS
Sbjct: 466 LQVLGLGGCRFTGSIPGWL------------------------GTLPSLFYIDLSSNLIS 501

Query: 398 GEFPKELSRLQPLVIEQ--NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNS 455
           GEFPKE+ RL  L  E+   + +++  +LP F+ PN N+T+ QY ++  L P I+L NNS
Sbjct: 502 GEFPKEIIRLPRLTSEEAATEVDQSYLELPVFVMPN-NATNLQYKQLSNLPPAIYLRNNS 560

Query: 456 LSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS---------- 505
           LSG IP E GQLKF+++LDL  NNF+GSIP+QIS LT LE+LDLS NHLS          
Sbjct: 561 LSGNIPTEIGQLKFIHILDLSYNNFSGSIPDQISNLTNLEKLDLSGNHLSGEIPGSLRSL 620

Query: 506 ---------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTT 549
                     N+L+G IPSGGQ  TFP SSFEGNP  C     RS + +P TT
Sbjct: 621 HFLSSFNVANNSLEGAIPSGGQFDTFPNSSFEGNPGLCGPPLQRSCSNQPATT 673

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841971|ref|XP_002888867.1| hypothetical protein ARALYDRAFT_476358 [Arabidopsis lyrata subsp. lyrata] gi|297334708|gb|EFH65126.1| hypothetical protein ARALYDRAFT_476358 [Arabidopsis lyrata subsp. lyrata]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/600 (41%), Positives = 336/600 (56%), Gaps = 92/600 (15%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL----------TGL 95
           S+ NL  +S L+LSHN + GPLP +    L  L ++DLSYNS  GEL           G+
Sbjct: 111 SVLNLRRLSRLDLSHNRLSGPLPPDFLSALDQLLVLDLSYNSFKGELPLQQSFGNGSNGI 170

Query: 96  IPSLAW------------------------------NHSF--------CS----MRLLDF 113
            P                                  N+SF        C+    +  LDF
Sbjct: 171 FPIQTVDLSSNLLEGEILDGSVFLEGAFNLTSFNVSNNSFTGPNPSFMCTTSPQLTKLDF 230

Query: 114 SYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISND 173
           SYNDFS ++   LG CSRL   +AG++NL   +P +IY    LE+  L  N+LSG I + 
Sbjct: 231 SYNDFSGELSQELGRCSRLSVLRAGFNNLSGEIPKEIYKLPELEQLFLPVNRLSGKIDDG 290

Query: 174 IINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNL 233
           I  LT L +LELY   L G IP DIGKL+ L  L L+ NNL+G +P S+ NCTNL  LNL
Sbjct: 291 ITRLTKLTLLELYFNHLEGEIPNDIGKLSKLSSLQLHINNLTGFIPVSLANCTNLVKLNL 350

Query: 234 MGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPP 293
             N   GNLSA +FS    L  +DL  N FTG F  T+ SC+ +TA+R A N+L GQI P
Sbjct: 351 RVNKLGGNLSAIDFSQFQSLSILDLGNNSFTGEFPSTVYSCKTMTAMRFAGNKLTGQISP 410

Query: 294 EIIKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGF 335
           ++++L+SL                  IL GCK L+ L +  NF +E  P+      SDGF
Sbjct: 411 QVLELESLSFFTFSDNQMTNLTGALRILQGCKKLSTLIMAKNFYDETVPSEIDFLDSDGF 470

Query: 336 QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395
            +L+   +  C+L G++P WL KL ++EV+ LS N++ GSIPGW G LP LFY  LS N 
Sbjct: 471 PSLQIFGIGACRLKGEIPAWLIKLQRVEVMDLSMNRLVGSIPGWLGTLPDLFYLDLSDNL 530

Query: 396 ISGEFPKELSRLQPLVIEQNKF--NRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLAN 453
           ++GE PKEL +L+ L+ ++  +   RN  +LP F+ PN  +T+ QYN++  L PTI++  
Sbjct: 531 LTGELPKELFQLRALMSQKAYYATERNYLELPVFVNPNNVTTNQQYNQLSSLPPTIYIRR 590

Query: 454 NSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS-------- 505
           N+L+G IP E GQLK L++L+L +NNF+GSIP+++S LT LERLDLS N+LS        
Sbjct: 591 NNLTGSIPVEVGQLKVLHILELLSNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLT 650

Query: 506 -----------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSST-TEPRTTTNIG 553
                       N L GPIP+G Q  TFP + FEGNP  C  +   S T T+P TT  +G
Sbjct: 651 GLHFMSYFNVANNTLSGPIPTGSQFDTFPKAYFEGNPLLCGGVLLTSCTPTQPSTTKIVG 710

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504209|ref|XP_003520891.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max]

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 262/601 (43%), Positives = 334/601 (55%), Gaps = 97/601 (16%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLI-------- 96
           PS+ NLT +S LNLSHN + G LP + F  L  L+I+DLS+N  SGEL   +        
Sbjct: 98  PSLTNLTALSRLNLSHNRLSGNLPNHFFSLLNHLQILDLSFNLFSGELPPFVANISGNTI 157

Query: 97  ---------------PSL-----------------AWNHSFCS---------------MR 109
                          PSL                   N+SF                 +R
Sbjct: 158 QELDMSSNLFHGTLPPSLLQHLADAGAGGSLTSFNVSNNSFTGHIPTSLCSNHSSSSSLR 217

Query: 110 LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF 169
            LD+S NDF   + P LG CS L+ F+AG ++L   LP DI+ A +L E SL  NKL+G 
Sbjct: 218 FLDYSSNDFIGTIQPGLGACSNLERFRAGSNSLSGPLPGDIFNAVALTEISLPLNKLNGT 277

Query: 170 ISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK 229
           I   I+NL +L VLELYS    G IP DIGKL+ L+ LLL+ NN++G+LP+S+M+C NL 
Sbjct: 278 IGEGIVNLANLTVLELYSNNFTGPIPSDIGKLSKLERLLLHANNITGTLPTSLMDCANLV 337

Query: 230 TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289
            L++  NL  G+LSA NFS L +L  +DL  N FTG    TL +C+ L A+RLA N  EG
Sbjct: 338 MLDVRLNLLEGDLSALNFSGLLRLTALDLGNNSFTGILPPTLYACKSLKAVRLASNHFEG 397

Query: 290 QIPPEIIKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKI 331
           QI P+I+ L+SL                  +LM  KNL+ L L+ NF NE  P+      
Sbjct: 398 QISPDILGLQSLAFLSISTNHLSNVTGALKLLMELKNLSTLMLSQNFFNEMMPDDANITN 457

Query: 332 SDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFAL 391
            DGFQ ++ ++L GC  TGQ+P WL  L KLEVL LS NQI+GSIP W   LP LFY  L
Sbjct: 458 PDGFQKIQVLALGGCNFTGQIPRWLVNLKKLEVLDLSYNQISGSIPPWLNTLPELFYIDL 517

Query: 392 SQNNISGEFPKELSRLQPLVIEQ--NKFNRNKPDLPFFLFPNQNSTSH-QYNRIFGLRPT 448
           S N ++G FP EL+RL  L  +Q  ++  R   +LP  LF N N+ S  QYN+I  L P 
Sbjct: 518 SFNRLTGIFPTELTRLPALTSQQAYDEVERTYLELP--LFANANNVSQMQYNQISNLPPA 575

Query: 449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS--- 505
           I+L NNSL+G IP E G+LK L+ LDL NN F+G+IP +IS L  LE+L LS N LS   
Sbjct: 576 IYLGNNSLNGSIPIEIGKLKVLHQLDLSNNKFSGNIPAEISNLINLEKLYLSGNQLSGEI 635

Query: 506 ----------------ENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTT 549
                            NNLQGPIP+GGQ  TF  SSFEGN + C  +  RS   +  TT
Sbjct: 636 PVSLKSLHFLSAFSVAYNNLQGPIPTGGQFDTFSSSSFEGNLQLCGSVVQRSCLPQQGTT 695

Query: 550 T 550
            
Sbjct: 696 A 696

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	555
TAIR|locus:2020402	729	RLP2 "AT1G17240" [Arabidopsis	0.816	0.621	0.4	8.2e-83
TAIR|locus:2051628	1008	PSKR1 "phytosulfokin receptor	0.807	0.444	0.345	1.7e-61
TAIR|locus:2020382	756	RLP3 "AT1G17250" [Arabidopsis	0.796	0.584	0.336	4.2e-56
TAIR|locus:2207056	1095	PSY1R "PSY1 receptor" [Arabido	0.787	0.399	0.325	8.2e-55
TAIR|locus:2154709	1036	PSKR2 "phytosylfokine-alpha re	0.821	0.440	0.319	2.4e-51
TAIR|locus:2181042	967	AT5G01890 [Arabidopsis thalian	0.841	0.482	0.299	4.7e-42
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.848	0.450	0.284	3.8e-40
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.787	0.388	0.292	7.4e-40
TAIR|locus:2169975	993	HSL2 "HAESA-like 2" [Arabidops	0.810	0.453	0.299	9.1e-40
TAIR|locus:2019255	1106	AT1G74360 [Arabidopsis thalian	0.630	0.316	0.271	1.1e-39

TAIR|locus:2020402 RLP2 "AT1G17240" [Arabidopsis thaliana (taxid:3702)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 192/480 (40%), Positives = 264/480 (55%)

Query:    53 ISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD 112
             I  L+LS N + G +  +S +    + +I  S+N  +   TG IPS     S   +  LD
Sbjct:   171 IQTLDLSSNLLEGEILRSSVYLQGTINLI--SFNVSNNSFTGPIPSFMCRSS-PQLSKLD 227

Query:   113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISN 172
             FSYNDFS  +   LG C RL   QAG++NL   +P +IY  + LE+  L  N+L+G I N
Sbjct:   228 FSYNDFSGHISQELGRCLRLTVLQAGFNNLSGVIPSEIYNLSELEQLFLPANQLTGKIDN 287

Query:   173 DIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMNCTNLKTLN 232
             +I  L  L  L LYS  L G IP DIG               +G++P S+ NCT L  LN
Sbjct:   288 NITRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINNINGTVPLSLANCTKLVKLN 347

Query:   233 LMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIP 292
             L  N   G L+   FS L  L+ +DL  N FTG+    + SC+ LTA+R A N+L G+I 
Sbjct:   348 LRVNQLGGGLTELEFSQLQSLKVLDLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTGEIS 407

Query:   293 PEIIKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG 334
             P++++L+SL                  IL GC+ L+ L L  NF +E  P+ +     DG
Sbjct:   408 PQVLELESLSFMGLSDNKLTNITGALSILQGCRKLSTLILAKNFYDETVPSKEDFLSPDG 467

Query:   335 FQNLRAVSLAGCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQN 394
             F  LR   +  C+L G++P                N+  GSIPGW G LP LFY  LS N
Sbjct:   468 FPKLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLSDN 527

Query:   395 NISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANN 454
              ++GE PKEL +L+ L+ ++   N N  +LP FL PN  +T+ QYN+++   PTI++  N
Sbjct:   528 LLTGELPKELFQLRALMSQKITEN-NYLELPIFLNPNNVTTNQQYNKLYSFPPTIYIRRN 586

Query:   455 SLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIP 514
             +L+G IP E GQLK L++L+L  NN +GSIP+++S LT LERLDLS N     NL G IP
Sbjct:   587 NLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNN-----NLSGSIP 641

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2051628 PSKR1 "phytosulfokin receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 1.7e-61, P = 1.7e-61
 Identities = 165/478 (34%), Positives = 239/478 (50%)

Query:    46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
             SI NL ++  L+LS N + G +P  S + L  L+  DLS N  +G L    PS    H+ 
Sbjct:   119 SIFNLKNLQTLDLSSNDLSGGIP-TSIN-LPALQSFDLSSNKFNGSL----PSHIC-HNS 171

Query:   106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
               +R++  + N F+       G C  L+    G ++L  ++P+D++    L    +  N+
Sbjct:   172 TQIRVVKLAVNYFAGNFTSGFGKCVLLEHLCLGMNDLTGNIPEDLFHLKRLNLLGIQENR 231

Query:   166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMNC 225
             LSG +S +I NL+SL+ L++      G IP                    G +P S+ N 
Sbjct:   232 LSGSLSREIRNLSSLVRLDVSWNLFSGEIPDVFDELPQLKFFLGQTNGFIGGIPKSLANS 291

Query:   226 TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285
              +L  LNL  N  +G L   N + +  L ++DL  N F G     L  C+ L  + LA N
Sbjct:   292 PSLNLLNLRNNSLSGRLML-NCTAMIALNSLDLGTNRFNGRLPENLPDCKRLKNVNLARN 350

Query:   286 QLEGQIPPEIIKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNYD 327
                GQ+P      +SL                  IL  CKNL  L LT+NF  EA P  D
Sbjct:   351 TFHGQVPESFKNFESLSYFSLSNSSLANISSALGILQHCKNLTTLVLTLNFHGEALP--D 408

Query:   328 QNKISDGFQNLRAVSLAGCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLF 387
              + +   F+ L+ + +A C+LTG +P                N++TG+IP W G+  +LF
Sbjct:   409 DSSLH--FEKLKVLVVANCRLTGSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGDFKALF 466

Query:   388 YFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRP 447
             Y  LS N+ +GE PK L++L+ L       N   PD PFF+  N+++ + QYN+IFG  P
Sbjct:   467 YLDLSNNSFTGEIPKSLTKLESLTSRNISVNEPSPDFPFFMKRNESARALQYNQIFGFPP 526

Query:   448 TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505
             TI L +N+LSG I  E G LK L+V DL  N  +GSIP+ +S +T LE LDLS N LS
Sbjct:   527 TIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLS 584

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP;IDA

GO:0009611 "response to wounding" evidence=IGI

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0045087 "innate immune response" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IGI

TAIR|locus:2020382 RLP3 "AT1G17250" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 156/463 (33%), Positives = 226/463 (48%)

Query:    48 GNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC- 106
             G    IS  N+S N   G +P         L  +D SYN    + TG IP        C 
Sbjct:   200 GTFDLIS-FNVSKNSFTGSIPSFMCKSSPQLSKLDFSYN----DFTGNIPQ---GLGRCL 251

Query:   107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKL 166
              + +L   +N+ S ++P  + N S L+      ++L   + DDI     L+   L+ N L
Sbjct:   252 KLSVLQAGFNNISGEIPSDIYNLSELEQLFLPVNHLSGKINDDITHLTKLKSLELYSNHL 311

Query:   167 SGFISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPS-SMMNC 225
              G I  DI  L+ L  L+L+   + G++P  +                 G+L        
Sbjct:   312 GGEIPMDIGQLSRLQSLQLHINNITGTVPPSLANCTNLVKLNLRLNRLEGTLSELDFSRF 371

Query:   226 TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285
              +L  L+L  N F+G+   +       L  +    N  TG     +     L+ L L+ N
Sbjct:   372 QSLSILDLGNNSFSGDFP-WRVHSCKSLSAMRFASNKLTGQISPHVLELESLSILSLSDN 430

Query:   286 QLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKIS-DGFQNLRAVSLA 344
             +L        I     IL GC+NL+ L +  NF NE  P+ D++ IS DGF NL+  +  
Sbjct:   431 KLMN------ITGALGILQGCRNLSTLLIGKNFYNETFPS-DKDLISSDGFPNLQIFASG 483

Query:   345 GCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKEL 404
             G  L G++P                NQ+ GSIPGW G  P LFY  LS+N +SGE PK+L
Sbjct:   484 GSGLRGEIPAWLIKLKSLAVIDLSHNQLVGSIPGWLGTFPHLFYIDLSENLLSGELPKDL 543

Query:   405 SRLQPLVIEQ--NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPA 462
              +L+ L+ ++  +   RN   LP F+ PN  +T  QYN++F L P I++  N+L G IP 
Sbjct:   544 FQLKALMSQKAYDATERNYLKLPVFVSPNNVTTHQQYNQLFSLPPGIYIRRNNLKGSIPI 603

Query:   463 ETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505
             E GQLK L+VL+L +N  +G IP+++S+LT LERLDLS NHLS
Sbjct:   604 EVGQLKVLHVLELSHNYLSGIIPHELSKLTSLERLDLSNNHLS 646

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2207056 PSY1R "PSY1 receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.2e-55, P = 8.2e-55
 Identities = 150/461 (32%), Positives = 226/461 (49%)

Query:    52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS-MRL 110
             +++  N+S+N   G +P         L  +D SYN  SG+L+  +       S CS + +
Sbjct:   199 NLTSFNVSNNSFTGSIPSFMCTASPQLTKLDFSYNDFSGDLSQEL-------SRCSRLSV 251

Query:   111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
             L   +N+ S ++P  + N   L+      + L   + + I     L    L+ N + G I
Sbjct:   252 LRAGFNNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDNGITRLTKLTLLELYSNHIEGEI 311

Query:   171 SNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPS-SMMNCTNLK 229
               DI  L+ L  L+L+   L+GSIP  +                 G+L +       +L 
Sbjct:   312 PKDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLNLRVNQLGGTLSAIDFSRFQSLS 371

Query:   230 TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF---LLTLTSCRLLTALRLACNQ 286
              L+L  N F G   +  +S    +  +    N  TG     +L L S    T        
Sbjct:   372 ILDLGNNSFTGEFPSTVYSC-KMMTAMRFAGNKLTGQISPQVLELESLSFFTFSDNKMTN 430

Query:   287 LEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346
             L G +          IL GCK L+ L +  NF +E  P+      SDGF +L+   +  C
Sbjct:   431 LTGALS---------ILQGCKKLSTLIMAKNFYDETVPSNKDFLRSDGFPSLQIFGIGAC 481

Query:   347 QLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSR 406
             +LTG++P                N+  G+IPGW G LP LFY  LS N ++GE PKEL +
Sbjct:   482 RLTGEIPAWLIKLQRVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSDNFLTGELPKELFQ 541

Query:   407 LQPLVIEQ--NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET 464
             L+ L+ ++  +   RN  +LP F+ PN  +T+ QYN++  L PTI++  N+L+G IP E 
Sbjct:   542 LRALMSQKAYDATERNYLELPVFVNPNNVTTNQQYNQLSSLPPTIYIKRNNLTGTIPVEV 601

Query:   465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505
             GQLK L++L+L  NNF+GSIP+++S LT LERLDLS N+LS
Sbjct:   602 GQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLS 642

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=IMP

GO:0009611 "response to wounding" evidence=IGI

GO:0031347 "regulation of defense response" evidence=IGI

TAIR|locus:2154709 PSKR2 "phytosylfokine-alpha receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 159/498 (31%), Positives = 235/498 (47%)

Query:    47 IGNLTHISHLNLSHNHVHGPLP-INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
             +  L  I  LN+S N + G L  +  F  L +L +   S N   GE+    P L    S 
Sbjct:   132 VSGLKLIQSLNISSNSLSGKLSDVGVFPGLVMLNV---SNNLFEGEIH---PELC--SSS 183

Query:   106 CSMRLLDFSYNDFSSQVPPRLGNCSR-LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164
               +++LD S N     +   L NCS+ ++      + L   LPD +Y+   LE+ SL  N
Sbjct:   184 GGIQVLDLSMNRLVGNLDG-LYNCSKSIQQLHIDSNRLTGQLPDYLYSIRELEQLSLSGN 242

Query:   165 KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMN 224
              LSG +S ++ NL+ L  L +        IP   G               SG  P S+  
Sbjct:   243 YLSGELSKNLSNLSGLKSLLISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFPPSLSQ 302

Query:   225 CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLAC 284
             C+ L+ L+L  N  +G+++  NF+  + L  +DL  N F+G    +L  C  +  L LA 
Sbjct:   303 CSKLRVLDLRNNSLSGSINL-NFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILSLAK 361

Query:   285 NQLEGQIPPEIIKLKSL------------------ILMGCKNLNVLFLTMNFMNEATPNY 326
             N+  G+IP     L+SL                  +L  C+NL+ L L+ NF+ E  PN 
Sbjct:   362 NEFRGKIPDTFKNLQSLLFLSLSNNSFVDFSETMNVLQHCRNLSTLILSKNFIGEEIPN- 420

Query:   327 DQNKISDGFQNLRAVSLAGCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSL 386
                 ++ GF NL  ++L  C L GQ+P                N   G+IP W G + SL
Sbjct:   421 ---NVT-GFDNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPHWIGKMESL 476

Query:   387 FYFALSQNNISGEFPKELSRLQPLVIEQNKFNR--NKPDLPFFLFPNQNSTSHQYNRIFG 444
             FY   S N ++G  P  ++ L+ L+      ++  +   +P ++  N++S    YN++  
Sbjct:   477 FYIDFSNNTLTGAIPVAITELKNLIRLNGTASQMTDSSGIPLYVKRNKSSNGLPYNQVSR 536

Query:   445 LRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHL 504
               P+I+L NN L+G I  E G+LK L++LDL  NNF G+IP+ IS L  LE LDLS NHL
Sbjct:   537 FPPSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHL 596

Query:   505 SENNLQGPIPSGGQLHTF 522
                   G IP   Q  TF
Sbjct:   597 -----YGSIPLSFQSLTF 609

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP

GO:0009611 "response to wounding" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2181042 AT5G01890 [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.7e-42, P = 4.7e-42
 Identities = 152/508 (29%), Positives = 224/508 (44%)

Query:    50 LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC-SM 108
             L  +  L LS+N++ G L    F  L  L+++D S N+LSG     IP   +    C S+
Sbjct:    91 LQFLHTLVLSNNNLTGTLN-PEFPHLGSLQVVDFSGNNLSGR----IPDGFFEQ--CGSL 143

Query:   109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSG 168
             R +  + N  +  +P  L  CS L       + L   LP DI+   SL+      N L G
Sbjct:   144 RSVSLANNKLTGSIPVSLSYCSTLTHLNLSSNQLSGRLPRDIWFLKSLKSLDFSHNFLQG 203

Query:   169 FISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMNCTNL 228
              I + +  L  L  + L      G +P DIG               SG+LP SM +  + 
Sbjct:   204 DIPDGLGGLYDLRHINLSRNWFSGDVPSDIGRCSSLKSLDLSENYFSGNLPDSMKSLGSC 263

Query:   229 KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE 288
              ++ L GN   G +  +    ++ LE +DL  N FTG+   +L +   L  L L+ N L 
Sbjct:   264 SSIRLRGNSLIGEIPDW-IGDIATLEILDLSANNFTGTVPFSLGNLEFLKDLNLSANMLA 322

Query:   289 GQIPPEIIKLKSLILMGC-KNL---NVL--FLTMNFMNEATPNYDQNKISD--------G 334
             G++P  +    +LI +   KN    +VL    T N  + +   +  +K S         G
Sbjct:   323 GELPQTLSNCSNLISIDVSKNSFTGDVLKWMFTGNSESSSLSRFSLHKRSGNDTIMPIVG 382

Query:   335 F-QNLRAVSLAGCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQ 393
             F Q LR + L+    TG++P                N + GSIP   G L       LS 
Sbjct:   383 FLQGLRVLDLSSNGFTGELPSNIWILTSLLQLNMSTNSLFGSIPTGIGGLKVAEILDLSS 442

Query:   394 NNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLAN 453
             N ++G  P E+     L  +Q   +RN+        P + S     N       TI L+ 
Sbjct:   443 NLLNGTLPSEIGGAVSL--KQLHLHRNRLSGQI---PAKISNCSALN-------TINLSE 490

Query:   454 NSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPI 513
             N LSG IP   G L  L  +DL  NN +GS+P +I +L+ L    L+ N +S NN+ G +
Sbjct:   491 NELSGAIPGSIGSLSNLEYIDLSRNNLSGSLPKEIEKLSHL----LTFN-ISHNNITGEL 545

Query:   514 PSGGQLHTFPPSSFEGNPEFCSDIANRS 541
             P+GG  +T P S+  GNP  C  + NRS
Sbjct:   546 PAGGFFNTIPLSAVTGNPSLCGSVVNRS 573

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 3.8e-40, P = 3.8e-40
 Identities = 147/516 (28%), Positives = 223/516 (43%)

Query:    49 NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
             +L  I  LNL++  + G      F  L  L  +DLS N  SG ++ L     W   F  +
Sbjct:    91 SLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPL-----WGR-FSKL 144

Query:   109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSG 168
                D S N    ++PP LG+ S L +     + L  S+P +I     + E +++ N L+G
Sbjct:   145 EYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTG 204

Query:   169 FISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMNCTNL 228
              I +   NLT L+ L L+   L GSIP +IG               +G +PSS  N  N+
Sbjct:   205 PIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNV 264

Query:   229 KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE 288
               LN+  N  +G +       ++ L+T+ L+ N  TG    TL + + L  L L  NQL 
Sbjct:   265 TLLNMFENQLSGEIPP-EIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLN 323

Query:   289 GQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQL 348
             G IPPE+ +++S+I     +L +   + N +    P+    K++     L  + L   QL
Sbjct:   324 GSIPPELGEMESMI-----DLEI---SENKLTGPVPD-SFGKLTA----LEWLFLRDNQL 370

Query:   349 TGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQ 408
             +G +P                N  TG +P        L    L  N+  G  PK L   +
Sbjct:   371 SGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCK 430

Query:   409 PLVIEQNKFNRNKPDLP--FFLFPNQNSTSHQYNRIFGLRPT----------IFLANNSL 456
              L+  + K N    D+   F ++P  N      N   G                L+NNS+
Sbjct:   431 SLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSI 490

Query:   457 SGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG 516
             +G IP E   +  L+ LDL +N   G +P  IS +  + +L L+ N LS     G IPSG
Sbjct:   491 TGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLS-----GKIPSG 545

Query:   517 GQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTTTNI 552
              +L T        N E+    +NR S+  P T  N+
Sbjct:   546 IRLLT--------NLEYLDLSSNRFSSEIPPTLNNL 573

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 7.4e-40, P = 7.4e-40
 Identities = 139/476 (29%), Positives = 211/476 (44%)

Query:    47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIP-SLAWNHSF 105
             I  L+ +   N+ +N + GPLP        L E++  + N     LTG +P SL   +  
Sbjct:   153 INKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNN-----LTGPLPRSLGNLNKL 207

Query:   106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
              + R      NDFS  +P  +G C  LK      + +   LP +I     L+E  L  NK
Sbjct:   208 TTFRA---GQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNK 264

Query:   166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMNC 225
              SGFI  DI NLTSL  L LY   L+G IP +IG               +G++P  +   
Sbjct:   265 FSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKL 324

Query:   226 TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285
             + +  ++   NL +G +     S +S+L  + L+ N  TG     L+  R L  L L+ N
Sbjct:   325 SKVMEIDFSENLLSGEIPV-ELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSIN 383

Query:   286 QLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATP----NYDQNKISDGF------ 335
              L G IPP    L S+  +   + ++  +    +   +P    ++ +N++S         
Sbjct:   384 SLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQ 443

Query:   336 -QNLRAVSLAGCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQN 394
               NL  ++L   ++ G +P               GN++TG  P     L +L    L QN
Sbjct:   444 QSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQN 503

Query:   395 NISGEFPKELS---RLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFL 451
               SG  P E+    +LQ L +  N+F+ N P          N  S   N +     T  +
Sbjct:   504 RFSGPLPPEIGTCQKLQRLHLAANQFSSNLP----------NEISKLSNLV-----TFNV 548

Query:   452 ANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSEN 507
             ++NSL+G IP+E    K L  LDL  N+F GS+P ++  L  LE L LS+N  S N
Sbjct:   549 SSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGN 604

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2169975 HSL2 "HAESA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 9.1e-40, P = 9.1e-40
 Identities = 148/494 (29%), Positives = 214/494 (43%)

Query:    56 LNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSY 115
             L L  N   G +P  S+  LT L++++L+ N LSG    ++P  A+      +  LD +Y
Sbjct:   152 LELESNLFTGEIP-QSYGRLTALQVLNLNGNPLSG----IVP--AFLGYLTELTRLDLAY 204

Query:   116 NDFS-SQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDI 174
               F  S +P  LGN S L   +  +SNL+  +PD I     LE   L  N L+G I   I
Sbjct:   205 ISFDPSPIPSTLGNLSNLTDLRLTHSNLVGEIPDSIMNLVLLENLDLAMNSLTGEIPESI 264

Query:   175 INLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMNCTNLKTLNLM 234
               L S+  +ELY   L G +P  IG               +G LP  +     L + NL 
Sbjct:   265 GRLESVYQIELYDNRLSGKLPESIGNLTELRNFDVSQNNLTGELPEKIA-ALQLISFNLN 323

Query:   235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPE 294
              N F G L     ++   L    ++ N FTG+    L     ++   ++ N+  G++PP 
Sbjct:   324 DNFFTGGLPDV-VALNPNLVEFKIFNNSFTGTLPRNLGKFSEISEFDVSTNRFSGELPPY 382

Query:   295 IIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPX 354
             +   + L         ++  +     E   +Y          +L  + +A  +L+G+VP 
Sbjct:   383 LCYRRKL-------QKIITFSNQLSGEIPESYGD------CHSLNYIRMADNKLSGEVPA 429

Query:   355 XXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPL-VIE 413
                            NQ+ GSIP        L    +S NN SG  P +L  L+ L VI+
Sbjct:   430 RFWELPLTRLELANNNQLQGSIPPSISKARHLSQLEISANNFSGVIPVKLCDLRDLRVID 489

Query:   414 --QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPT----------IFLANNSLSGRIP 461
               +N F  + P     L  N      Q N + G  P+          + L+NN L G IP
Sbjct:   490 LSRNSFLGSIPSCINKL-KNLERVEMQENMLDGEIPSSVSSCTELTELNLSNNRLRGGIP 548

Query:   462 AETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHT 521
              E G L  LN LDL NN   G IP +      L RL L++ ++S+N L G IPSG Q   
Sbjct:   549 PELGDLPVLNYLDLSNNQLTGEIPAE------LLRLKLNQFNVSDNKLYGKIPSGFQQDI 602

Query:   522 FPPSSFEGNPEFCS 535
             F PS F GNP  C+
Sbjct:   603 FRPS-FLGNPNLCA 615

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019255 AT1G74360 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
 Identities = 107/394 (27%), Positives = 180/394 (45%)

Query:    52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIP---------SLAWN 102
             ++ HLNLSHN + G L +     L+ LE++DLS N ++G++    P         +L+ N
Sbjct:   136 NLKHLNLSHNILEGELSLPG---LSNLEVLDLSLNRITGDIQSSFPLFCNSLVVANLSTN 192

Query:   103 H---------SFC-SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYA 152
             +         + C +++ +DFS N FS +V    G   RL  F    ++L  ++   ++ 
Sbjct:   193 NFTGRIDDIFNGCRNLKYVDFSSNRFSGEVWTGFG---RLVEFSVADNHLSGNISASMFR 249

Query:   153 A-ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXX 211
                +L+   L  N   G     + N  +L VL L+  +  G+IP +IG            
Sbjct:   250 GNCTLQMLDLSGNAFGGEFPGQVSNCQNLNVLNLWGNKFTGNIPAEIGSISSLKGLYLGN 309

Query:   212 XXXSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLT- 270
                S  +P +++N TNL  L+L  N F G++    F   +Q++ + L+ N + G    + 
Sbjct:   310 NTFSRDIPETLLNLTNLVFLDLSRNKFGGDIQEI-FGRFTQVKYLVLHANSYVGGINSSN 368

Query:   271 LTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNK 330
             +     L+ L L  N   GQ+P EI +++SL     K L + +   NF  +    Y    
Sbjct:   369 ILKLPNLSRLDLGYNNFSGQLPTEISQIQSL-----KFLILAY--NNFSGDIPQEYGN-- 419

Query:   331 ISDGFQNLRAVSLAGCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFA 390
                    L+A+ L+  +LTG +P                N ++G IP   GN  SL +F 
Sbjct:   420 ----MPGLQALDLSFNKLTGSIPASFGKLTSLLWLMLANNSLSGEIPREIGNCTSLLWFN 475

Query:   391 LSQNNISGEFPKELSRL--QPL-VIEQNKFNRNK 421
             ++ N +SG F  EL+R+   P    E N+ N++K
Sbjct:   476 VANNQLSGRFHPELTRMGSNPSPTFEVNRQNKDK 509

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033978001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1078 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	555
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-57
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-45
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-35
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  207 bits (527), Expect = 1e-57
 Identities = 163/515 (31%), Positives = 236/515 (45%), Gaps = 57/515 (11%)

Query: 53  ISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD 112
           + +LNLS+N+  G +P      +  LE +DLS N LSGE+   I       SF S+++LD
Sbjct: 120 LRYLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDI------GSFSSLKVLD 170

Query: 113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISN 172
              N    ++P  L N + L+      + L+  +P ++    SL+   L +N LSG I  
Sbjct: 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230

Query: 173 DIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLN 232
           +I  LTSL  L+L    L G IP  +G L NL+YL LY+N LSG +P S+ +   L +L+
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290

Query: 233 LMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIP 292
           L  N  +G +       L  LE + L+ N FTG   + LTS   L  L+L  N+  G+IP
Sbjct: 291 LSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 293 PEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQV 352
             + K          NL VL L+ N +    P   +   S G  NL  + L    L G++
Sbjct: 350 KNLGKH--------NNLTVLDLSTNNLTGEIP---EGLCSSG--NLFKLILFSNSLEGEI 396

Query: 353 PLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPK---ELSRLQP 409
           P  L     L  + L  N  +G +P  F  LP +++  +S NN+ G       ++  LQ 
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456

Query: 410 LVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIF----------LANNSLSGR 459
           L + +NKF    PD   F      +     N+  G  P             L+ N LSG 
Sbjct: 457 LSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514

Query: 460 IPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHL--------------- 504
           IP E    K L  LDL +N  +G IP   S++ +L +LDLS+N L               
Sbjct: 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574

Query: 505 ----SENNLQGPIPSGGQLHTFPPSSFEGNPEFCS 535
               S N+L G +PS G       S+  GN + C 
Sbjct: 575 QVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  171 bits (435), Expect = 2e-45
 Identities = 151/494 (30%), Positives = 234/494 (47%), Gaps = 70/494 (14%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
           N + +  ++LS  ++ G +    F  L  ++ I+LS N LSG +   I + +      S+
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSS-----SL 120

Query: 109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSG 168
           R L+ S N+F+  +P   G+   L++     + L   +P+DI + +SL+   L  N L G
Sbjct: 121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Query: 169 FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNL 228
            I N + NLTSL  L L S +L+G IPR++G++ +LK++ L  NNLSG +P  +   T+L
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 229 KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE 288
             L+L+ N   G + + +   L  L+ + LY N  +G    ++ S + L +L L+ N L 
Sbjct: 239 NHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Query: 289 GQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQN---LRAVSLAG 345
           G+IP  +I+L        +NL +L L   F N  T      KI     +   L+ + L  
Sbjct: 298 GEIPELVIQL--------QNLEILHL---FSNNFT-----GKIPVALTSLPRLQVLQLWS 341

Query: 346 CQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELS 405
            + +G++P  L K   L VL LS N +TG IP    +  +LF   L  N++ GE PK L 
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 406 RLQPL--VIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIF---LANNSLSGRI 460
             + L  V  Q+                 NS S +    F   P ++   ++NN+L GRI
Sbjct: 402 ACRSLRRVRLQD-----------------NSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Query: 461 PAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNH----------------- 503
            +    +  L +L L  N F G +P        LE LDLS+N                  
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ 503

Query: 504 --LSENNLQGPIPS 515
             LSEN L G IP 
Sbjct: 504 LKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (352), Expect = 9e-35
 Identities = 144/515 (27%), Positives = 210/515 (40%), Gaps = 80/515 (15%)

Query: 59  SHNHVHGPLPINSFHFLTL---------LEIIDLSYNSLSGELTGLIPSLAWNHSFCSMR 109
                H P  I    FL L         LE++ LS+ S   +    + +  WN S     
Sbjct: 3   KKGPQHCPYLIFMLFFLFLNFSMLHAEELELL-LSFKSSINDPLKYLSN--WNSS----- 54

Query: 110 LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF 169
                  D          N SR+ S      N+   +   I+    ++  +L  N+LSG 
Sbjct: 55  ------ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP 108

Query: 170 ISNDIINLT-SLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNL 228
           I +DI   + SL  L L +    GSIPR  G + NL+ L L  N LSG +P+ + + ++L
Sbjct: 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166

Query: 229 KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE 288
           K L+L GN+  G +     + L+ LE + L  N   G     L   + L  + L  N L 
Sbjct: 167 KVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 289 GQIPPEIIKLKSL----------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKIS 332
           G+IP EI  L SL                 L   KNL  LFL  N ++   P        
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-----I 280

Query: 333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS 392
              Q L ++ L+   L+G++P  + +L  LE+L L  N  TG IP    +LP L    L 
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 393 QNNISGEFPKELSRLQPLVIEQNKFNRNKPDLP---------FFLFPNQNSTSHQYNRIF 443
            N  SGE PK L +   L +     N    ++P         F L    NS   +  +  
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Query: 444 G----LRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDL 499
           G    LR  + L +NS SG +P+E  +L  +  LD+ NNN  G I ++   +  L+ L L
Sbjct: 401 GACRSLR-RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459

Query: 500 SKNH------------------LSENNLQGPIPSG 516
           ++N                   LS N   G +P  
Sbjct: 460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK 494

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 6e-10
 Identities = 29/77 (37%), Positives = 47/77 (61%)

Query: 146 LPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK 205
           +P+DI     L+  +L  N + G I   + ++TSL VL+L      GSIP  +G+LT+L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 206 YLLLYRNNLSGSLPSSM 222
            L L  N+LSG +P+++
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 448 TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSEN 507
           +I L+ NS+ G IP   G +  L VLDL  N+F GSIP  + QLT L  L+L+ N LS  
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS-- 503

Query: 508 NLQGPIPS--GGQLHTFPPSSFEGNPEFC 534
              G +P+  GG+L      +F  N   C
Sbjct: 504 ---GRVPAALGGRLLHRASFNFTDNAGLC 529

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 8e-09
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query: 166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNC 225
           L GFI NDI  L  L  + L    + G+IP  +G +T+L+ L L  N+ +GS+P S+   
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 226 TNLKTLNLMGNLFAGNLSA 244
           T+L+ LNL GN  +G + A
Sbjct: 490 TSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 41  RYHLPS-IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSL 99
           R  +P+ I  L H+  +NLS N + G +P  S   +T LE++DLSYNS +G +   +  L
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 100 AWNHSFCSMRLLDFSYNDFSSQVPPRLG 127
                  S+R+L+ + N  S +VP  LG
Sbjct: 490 T------SLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 36/126 (28%)

Query: 340 AVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGE 399
            + L    L G +P  +SKL  L+ + LSGN I G+IP   G++ SL    LS N+ +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 400 FPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR 459
            P+ L +L  L I                                    + L  NSLSGR
Sbjct: 482 IPESLGQLTSLRI------------------------------------LNLNGNSLSGR 505

Query: 460 IPAETG 465
           +PA  G
Sbjct: 506 VPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 28/70 (40%), Positives = 41/70 (58%)

Query: 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
            ++L++++L+G  + G +P  L  +T LEVL LS N   GSIP   G L SL    L+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 395 NISGEFPKEL 404
           ++SG  P  L
Sbjct: 501 SLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 337 NLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNI 396
           NL+++ L+  +LT         L  L+VL LSGN +T   P  F  LPSL    LS NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 451 LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQ 510
           L N  L G IP +  +L+ L  ++L  N+  G+IP  +  +T LE LDLS N  +     
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN----- 479

Query: 511 GPIP-SGGQLHTFPPSSFEGN 530
           G IP S GQL +    +  GN
Sbjct: 480 GSIPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 13/105 (12%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
            +G+L+ +  L LS N + G +P +       L  +DLS+N LSG+    IP+     SF
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQ----IPA-----SF 543

Query: 106 CSMRL---LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP 147
             M +   LD S N  S ++P  LGN   L      +++L  SLP
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 16/102 (15%)

Query: 285 NQ-LEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG-FQNLRAVS 342
           NQ L G IP +I KL+ L     +++N   L+ N +    P       S G   +L  + 
Sbjct: 427 NQGLRGFIPNDISKLRHL-----QSIN---LSGNSIRGNIP------PSLGSITSLEVLD 472

Query: 343 LAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP 384
           L+     G +P  L +LT L +L L+GN ++G +P   G   
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 214 LSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTS 273
           L G +P+ +    +L+++NL GN   GN+   +   ++ LE +DL  N F GS   +L  
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 274 CRLLTALRLACNQLEGQIP 292
              L  L L  N L G++P
Sbjct: 489 LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 53  ISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD 112
           I  L L +  + G +P N    L  L+ I+LS NS+ G +    PSL    S  S+ +LD
Sbjct: 420 IDGLGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIP---PSLG---SITSLEVLD 472

Query: 113 FSYNDFSSQVPPRLGNCSRLK 133
            SYN F+  +P  LG  + L+
Sbjct: 473 LSYNSFNGSIPESLGQLTSLR 493

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 183 LELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNL 242
           L L ++ L G IP DI KL +L+ + L  N++ G++P S+ + T+L+ L+L  N F G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 243 SAYNFSVLSQLETIDLYINMFTG 265
              +   L+ L  ++L  N  +G
Sbjct: 483 PE-SLGQLTSLRILNLNGNSLSG 504

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	555
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN03150	623	hypothetical protein; Provisional	99.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.94
PLN03150	623	hypothetical protein; Provisional	98.91
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.61
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.61
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.08
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.05
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.84
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.61
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.47
PRK15386	426	type III secretion protein GogB; Provisional	97.46
KOG4341	483	consensus F-box protein containing LRR [General fu	97.42
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.57
KOG4341	483	consensus F-box protein containing LRR [General fu	96.52
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.84
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.78
KOG4308	478	consensus LRR-containing protein [Function unknown	95.64
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.94
smart00370	26	LRR Leucine-rich repeats, outliers.	93.94
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.26
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.81
smart00370	26	LRR Leucine-rich repeats, outliers.	90.81
KOG4308	478	consensus LRR-containing protein [Function unknown	90.2
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.71
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.65
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	87.61
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.65
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.4
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.98

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.4e-52  Score=468.68  Aligned_cols=515  Identities=30%  Similarity=0.421  Sum_probs=356.9

Q ss_pred             CCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccC
Q 040254            6 AAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSY   85 (555)
Q Consensus         6 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   85 (555)
                      -|+....+|.|.+..|...  ..++.++++.+.+++.++..|..+++|++|+|++|.+.+.+|...|..+++|++|+|++
T Consensus        50 ~w~~~~~~c~w~gv~c~~~--~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~  127 (968)
T PLN00113         50 NWNSSADVCLWQGITCNNS--SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN  127 (968)
T ss_pred             CCCCCCCCCcCcceecCCC--CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcC
Confidence            3555557899998888753  36888999999999999999999999999999999999899999998899999999999


Q ss_pred             CcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeeccc
Q 040254           86 NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK  165 (555)
Q Consensus        86 n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~  165 (555)
                      |++++..|..        .+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus       128 n~l~~~~p~~--------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        128 NNFTGSIPRG--------SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             CccccccCcc--------ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence            9998765531        34588888888888887788888888888888888888888888888888888888888888


Q ss_pred             CcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcc
Q 040254          166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAY  245 (555)
Q Consensus       166 i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~  245 (555)
                      +.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++ .
T Consensus       200 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~  278 (968)
T PLN00113        200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-P  278 (968)
T ss_pred             CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-h
Confidence            887778888888888888888888887888888888888888888888877777788888888888888887775555 4


Q ss_pred             cccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccc----------------cccCCCCC
Q 040254          246 NFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL----------------ILMGCKNL  309 (555)
Q Consensus       246 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l----------------~~~~~~~L  309 (555)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+..+                .+..+++|
T Consensus       279 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L  358 (968)
T PLN00113        279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL  358 (968)
T ss_pred             hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence            56677788888888887777777777777778888887777776666555433321                12223455


Q ss_pred             cEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEE
Q 040254          310 NVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYF  389 (555)
Q Consensus       310 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  389 (555)
                      +.+++++|.+.+..+..+     ...++|+.|++++|.+.+..|.++..+++|+.|++++|++++..|..+..+++|+.|
T Consensus       359 ~~L~Ls~n~l~~~~p~~~-----~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  433 (968)
T PLN00113        359 TVLDLSTNNLTGEIPEGL-----CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL  433 (968)
T ss_pred             cEEECCCCeeEeeCChhH-----hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence            556665555554433322     233445555555555554555555555555555555555555555555555555555


Q ss_pred             EccCccCccccch---hhhccccchhhhccCCCCCCCCCccccCCCccccccccccc----------CCCCEEEccCccc
Q 040254          390 ALSQNNISGEFPK---ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIF----------GLRPTIFLANNSL  456 (555)
Q Consensus       390 ~L~~n~l~~~~~~---~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~l~L~~n~l  456 (555)
                      ++++|.+++.++.   .+.+|+.|++.+|.+....+..  .....++.+++..+.+.          .....|++++|.+
T Consensus       434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  511 (968)
T PLN00113        434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS--FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL  511 (968)
T ss_pred             ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc--cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcc
Confidence            5555555544443   2334444445444432211100  00111222222211111          1123566666666


Q ss_pred             cccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC-------------------CCcceecCCCCC
Q 040254          457 SGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS-------------------ENNLQGPIPSGG  517 (555)
Q Consensus       457 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-------------------~~~l~~~ip~~~  517 (555)
                      ++.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|||++|+++                   +|.+.|.+|...
T Consensus       512 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~  591 (968)
T PLN00113        512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG  591 (968)
T ss_pred             eeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc
Confidence            6666666666666666666666666666666666666666666666665                   355679999988


Q ss_pred             CCCCCCCCccCCCcCCCCccc
Q 040254          518 QLHTFPPSSFEGNPEFCSDIA  538 (555)
Q Consensus       518 ~~~~l~~~~~~gNp~~c~~~~  538 (555)
                      .+.++....+.|||.+|+.+.
T Consensus       592 ~~~~~~~~~~~~n~~lc~~~~  612 (968)
T PLN00113        592 AFLAINASAVAGNIDLCGGDT  612 (968)
T ss_pred             hhcccChhhhcCCccccCCcc
Confidence            888999999999999998653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-45  Score=414.58  Aligned_cols=448  Identities=29%  Similarity=0.459  Sum_probs=363.3

Q ss_pred             eeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCC
Q 040254           27 FNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC  106 (555)
Q Consensus        27 ~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  106 (555)
                      ..+..+++++|.+++.+|.  ..+++|++|+|++|.+.+.+|. .+..+++|++|++++|.+.+..|..+..      ++
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~------l~  188 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTN------LT  188 (968)
T ss_pred             CCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhhhh------Cc
Confidence            4667788888888888775  4578888899988888766664 4777888899999888888776666543      44


Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      +|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence            88888888888887788888888888888888888888888888888888888888888887778888888888888888


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS  266 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  266 (555)
                      +|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+.
T Consensus       269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~  347 (968)
T PLN00113        269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGE  347 (968)
T ss_pred             CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCc
Confidence            888887888888888888888888888887788888888888888888888876555 4677788888888888888777


Q ss_pred             ccccccCCCCCcEEEcccceecccCChhhhhcccc----------------cccCCCCCcEEEeccccCCCCCCcccccc
Q 040254          267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL----------------ILMGCKNLNVLFLTMNFMNEATPNYDQNK  330 (555)
Q Consensus       267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l----------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  330 (555)
                      .+..+..+++|+.|++++|++.+.+|..+..+..+                .+..+++|+.+++++|.+++..+..+   
T Consensus       348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~---  424 (968)
T PLN00113        348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF---  424 (968)
T ss_pred             CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH---
Confidence            77777888888888888888877777666543322                24457789999999999887666544   


Q ss_pred             ccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhh---cc
Q 040254          331 ISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELS---RL  407 (555)
Q Consensus       331 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l  407 (555)
                        ..++.|+.|++++|.+++.++..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.   .+
T Consensus       425 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  501 (968)
T PLN00113        425 --TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL  501 (968)
T ss_pred             --hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence              678899999999999998888888899999999999999988887765 468999999999999988886654   56


Q ss_pred             ccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchh
Q 040254          408 QPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQ  487 (555)
Q Consensus       408 ~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  487 (555)
                      +.|++++|.+....+.              .... ....+.|++++|.+++.+|..+..+++|++|+|++|++++.+|..
T Consensus       502 ~~L~Ls~N~l~~~~p~--------------~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        502 MQLKLSENKLSGEIPD--------------ELSS-CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             CEEECcCCcceeeCCh--------------HHcC-ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence            6677777766432210              0001 122347999999999999999999999999999999999999999


Q ss_pred             hhCCccCCeeeCCCCCCC
Q 040254          488 ISQLTILERLDLSKNHLS  505 (555)
Q Consensus       488 l~~l~~L~~L~Ls~N~l~  505 (555)
                      +..+++|+.|++++|+++
T Consensus       567 l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        567 LGNVESLVQVNISHNHLH  584 (968)
T ss_pred             HhcCcccCEEeccCCcce
Confidence            999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-39  Score=306.94  Aligned_cols=394  Identities=23%  Similarity=0.238  Sum_probs=276.9

Q ss_pred             eeeeccCCCCCccccCCccccCC--CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254           28 NILMQPAMNKLVQRYHLPSIGNL--THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF  105 (555)
Q Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  105 (555)
                      .+..++.+.+.+...-...+..+  +..+.|++++|+++ ++....|.++++|+.+.+.+|.++.+     |.+.  +..
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~I-----P~f~--~~s  124 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRI-----PRFG--HES  124 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhc-----cccc--ccc
Confidence            34444555444443322222211  24566888888887 77777788888888888888877732     2222  123


Q ss_pred             CCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEc
Q 040254          106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL  185 (555)
Q Consensus       106 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L  185 (555)
                      .+|+.|+|.+|.|.+.-.+.+..++.|++|||+.|.+...-...|..-.++++|++++|+|+.+..+.|..+.+|..|.|
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            36888888888777666667777778888888776665544445666677777777777777777777777777777777


Q ss_pred             ccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254          186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       186 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      +.|+++...+..|..+++|+.|+|..|.+.-.-...|..+++|+.|.+..|.+. .+....|-++.++++|++..|.++.
T Consensus       205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhh
Confidence            777777666666777777777777777776332445677777777777777776 5666667777777777777777776


Q ss_pred             cccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccC
Q 040254          266 SFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG  345 (555)
Q Consensus       266 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~  345 (555)
                      ...+++.++..|+.|++++|.|...-+                                +..     ...++|+.|+++.
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~--------------------------------d~W-----sftqkL~~LdLs~  326 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHI--------------------------------DSW-----SFTQKLKELDLSS  326 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeec--------------------------------chh-----hhcccceeEeccc
Confidence            666666667777777777776552222                                211     4456788888888


Q ss_pred             cccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccc---hhhhccccchhhhccCCCCCC
Q 040254          346 CQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP---KELSRLQPLVIEQNKFNRNKP  422 (555)
Q Consensus       346 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~~~~~~~~~~~  422 (555)
                      |+++...+..|..+..|++|+|++|+++....++|..+.+|++|||++|.++..+-   ..|..|..|+           
T Consensus       327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr-----------  395 (873)
T KOG4194|consen  327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR-----------  395 (873)
T ss_pred             cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh-----------
Confidence            88887777888888888888888888887777788888888888888888875433   2344555555           


Q ss_pred             CCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCC
Q 040254          423 DLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN  502 (555)
Q Consensus       423 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N  502 (555)
                                               .|++.+|++..+...+|.+++.|+.|||.+|.|.++-|+.|.++ .|++|-+..-
T Consensus       396 -------------------------kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  396 -------------------------KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             -------------------------heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence                                     48888888887667788889999999999999988888888887 8888877654


Q ss_pred             CC
Q 040254          503 HL  504 (555)
Q Consensus       503 ~l  504 (555)
                      .+
T Consensus       450 sf  451 (873)
T KOG4194|consen  450 SF  451 (873)
T ss_pred             ce
Confidence            43

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-39  Score=306.87  Aligned_cols=376  Identities=24%  Similarity=0.219  Sum_probs=288.9

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      .-+.|++++|++..+.+..|.++++|+.+++..|. ...+|.......+|+.|++.+|.|+.+..+.+..++.|+.|||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            45667777777776666777777777777777554 34556544445567777777777777777777777777777777


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS  266 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  266 (555)
                      .|.+....-..|..-.++++|+|++|.++..-...|..+.+|.+|.++.|+++ .+|...|+.++.|+.|++..|++...
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeee
Confidence            77776555555666677777788777777665666777777777788877777 67777777777888888877777654


Q ss_pred             ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254          267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC  346 (555)
Q Consensus       267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  346 (555)
                      ..-.|.++++|+.|.+..|.+.        +++.-.|.+|.+++.++++.|++........     -++..|+.|+++.|
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~--------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l-----fgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDIS--------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWL-----FGLTSLEQLDLSYN  303 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcc--------cccCcceeeecccceeecccchhhhhhcccc-----cccchhhhhccchh
Confidence            4556777778888888777665        5555567777788888888888777665544     67889999999999


Q ss_pred             ccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCc
Q 040254          347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPF  426 (555)
Q Consensus       347 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~  426 (555)
                      .|..+-++.+..+++|++|+|++|+++...+++|..+..|++|.|++|.+...-...|..++.|+               
T Consensus       304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~---------------  368 (873)
T KOG4194|consen  304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH---------------  368 (873)
T ss_pred             hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh---------------
Confidence            99888888889999999999999999988889999999999999999999866666777777777               


Q ss_pred             cccCCCcccccccccccCCCCEEEccCccccccCCh---hccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCC
Q 040254          427 FLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPA---ETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNH  503 (555)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~  503 (555)
                                           +|||++|.++..+.+   .|.++++|+.|++.+|+|..+....|..++.|+.|||.+|.
T Consensus       369 ---------------------~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  369 ---------------------KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             ---------------------hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence                                 589999999877654   48899999999999999997777789999999999999999


Q ss_pred             CCCCcceecCCCC-CCCCCCCCCccCCCcCCCCcccC
Q 040254          504 LSENNLQGPIPSG-GQLHTFPPSSFEGNPEFCSDIAN  539 (555)
Q Consensus       504 l~~~~l~~~ip~~-~~~~~l~~~~~~gNp~~c~~~~~  539 (555)
                      |.     ..-|.. ..+ .+..+-+..-.++||+.+.
T Consensus       428 ia-----SIq~nAFe~m-~Lk~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  428 IA-----SIQPNAFEPM-ELKELVMNSSSFLCDCQLK  458 (873)
T ss_pred             ce-----eecccccccc-hhhhhhhcccceEEeccHH
Confidence            97     222221 112 4566666666689987653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.2e-37  Score=281.02  Aligned_cols=243  Identities=28%  Similarity=0.370  Sum_probs=142.3

Q ss_pred             eeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCC
Q 040254           28 NILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS  107 (555)
Q Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  107 (555)
                      +...+.+++|.++...+ .+.++..+.+|++++|++. .+|+.+ ..+..++.++.++|++. ..|..+..+      ..
T Consensus        46 ~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls-~lp~~i~s~------~~  115 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLS-ELPEQIGSL------IS  115 (565)
T ss_pred             chhhhhhccCchhhccH-hhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHh-hccHHHhhh------hh
Confidence            44555666666665443 4666667777777777766 566543 33666677777777666 233333332      26


Q ss_pred             ccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc
Q 040254          108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS  187 (555)
Q Consensus       108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~  187 (555)
                      |+.++.++|.+. .+++.++.+..+..++..+|++. .+|.++..+.++..+++.+|+++...+..+. ++.|++||...
T Consensus       116 l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~  192 (565)
T KOG0472|consen  116 LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS  192 (565)
T ss_pred             hhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccch
Confidence            666666666666 35666666666666666654433 4555666666666666666666655444444 66666666655


Q ss_pred             CccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccc
Q 040254          188 KELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF  267 (555)
Q Consensus       188 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  267 (555)
                      |-+. .+|..++.+.+|..|++..|++. .+| .|..+..|+++++..|.+. .++....+.+.++..|++.+|+++. .
T Consensus       193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~  267 (565)
T KOG0472|consen  193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-V  267 (565)
T ss_pred             hhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-C
Confidence            5543 45555666666666666666665 444 4555566666666666554 4554445555666666666666553 3


Q ss_pred             cccccCCCCCcEEEcccceec
Q 040254          268 LLTLTSCRLLTALRLACNQLE  288 (555)
Q Consensus       268 ~~~l~~~~~L~~L~l~~n~~~  288 (555)
                      |..+.-+++|++||++.|.++
T Consensus       268 Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             chHHHHhhhhhhhcccCCccc
Confidence            444455555666666666555

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=7.2e-35  Score=268.27  Aligned_cols=437  Identities=24%  Similarity=0.299  Sum_probs=307.6

Q ss_pred             ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254           26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF  105 (555)
Q Consensus        26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  105 (555)
                      ...++++++.+|.++ ..|++++++..++.++.++|+++ .+|..... ...|+.++.+.|.+.. .++.+..+.     
T Consensus        67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s-~~~l~~l~~s~n~~~e-l~~~i~~~~-----  137 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGS-LISLVKLDCSSNELKE-LPDSIGRLL-----  137 (565)
T ss_pred             ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhh-hhhhhhhhccccceee-cCchHHHHh-----
Confidence            356778888888876 45668999999999999999999 89986555 8999999999999884 444554444     


Q ss_pred             CCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEc
Q 040254          106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL  185 (555)
Q Consensus       106 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L  185 (555)
                       .|+.++..+|++.+ .|+++.++.++..+++.+|.+....|..+. +++|++|+...|-++. .|..++.+.+|..|++
T Consensus       138 -~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  138 -DLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLET-LPPELGGLESLELLYL  213 (565)
T ss_pred             -hhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhc-CChhhcchhhhHHHHh
Confidence             89999999999995 888999999999999998887665555444 9999999999998876 5677999999999999


Q ss_pred             ccCccccCCCcCccCCCCCCeeeCccCcCcccCCc-cccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccc
Q 040254          186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS-SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT  264 (555)
Q Consensus       186 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~  264 (555)
                      ..|++. ..| .|.++..|+.|+++.|.+. .+|. ..+++.++..|++..|++. +.| .....+.+|+.|++++|.++
T Consensus       214 ~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~P-de~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  214 RRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVP-DEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             hhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCc-hHHHHhhhhhhhcccCCccc
Confidence            999985 666 6899999999999999998 5554 4568999999999999998 677 46777899999999999998


Q ss_pred             ccccccccCCCCCcEEEcccceecccCCh--------hhhhccc-----------------c--------cccCCCCCcE
Q 040254          265 GSFLLTLTSCRLLTALRLACNQLEGQIPP--------EIIKLKS-----------------L--------ILMGCKNLNV  311 (555)
Q Consensus       265 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~--------~l~~l~~-----------------l--------~~~~~~~L~~  311 (555)
                      + .+..++.+ .|+.|-+.+|.+...-.+        .+..+..                 .        ........+.
T Consensus       289 ~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki  366 (565)
T KOG0472|consen  289 S-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI  366 (565)
T ss_pred             c-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence            5 45567888 899999999976521000        0000000                 0        1112334667


Q ss_pred             EEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCc-EEEccCCccccccCccccCCCCCcEEE
Q 040254          312 LFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLE-VLLLSGNQITGSIPGWFGNLPSLFYFA  390 (555)
Q Consensus       312 L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~  390 (555)
                      |++++-.++..+...+..   +.-.-+..+++++|++. ++|..+..++.+. .+.+++|.++ .+|..+..+++|..|+
T Consensus       367 L~~s~~qlt~VPdEVfea---~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~  441 (565)
T KOG0472|consen  367 LDVSDKQLTLVPDEVFEA---AKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLD  441 (565)
T ss_pred             hcccccccccCCHHHHHH---hhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeee
Confidence            777777777666554411   11122677888888887 5666665555443 3445555554 6666677777777777


Q ss_pred             ccCccCccccchhhhccccc---hhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCC
Q 040254          391 LSQNNISGEFPKELSRLQPL---VIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQL  467 (555)
Q Consensus       391 L~~n~l~~~~~~~~~~l~~L---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l  467 (555)
                      |++|.+. .+|..+..+..|   +++.|.|...+.    +.+.            ....+.+-.++|++....+..+.+|
T Consensus       442 L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~----~~y~------------lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  442 LSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPE----CLYE------------LQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             cccchhh-hcchhhhhhhhhheecccccccccchH----HHhh------------HHHHHHHHhccccccccChHHhhhh
Confidence            7777766 556555444433   333333222111    0000            0000123344466664445557777


Q ss_pred             CCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          468 KFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       468 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      .+|++|||.+|.+. .+|..++++.+|+.|++++|+|+
T Consensus       505 ~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            77777777777777 67777777777777777777775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.5e-32  Score=266.01  Aligned_cols=366  Identities=25%  Similarity=0.352  Sum_probs=250.0

Q ss_pred             cCCCCCCEEEccCCcCcC-cCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254           48 GNLTHISHLNLSHNHVHG-PLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL  126 (555)
Q Consensus        48 ~~l~~L~~L~L~~n~~~~-~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  126 (555)
                      +-++-+|-+|+++|.++| ..|.+ ...++.++-|.|...++. ..|+.+..++      +|++|.+++|++.. +-..+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~-~vPeEL~~lq------kLEHLs~~HN~L~~-vhGEL   74 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLE-QVPEELSRLQ------KLEHLSMAHNQLIS-VHGEL   74 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchh-HHHhhheeEEEechhhhh-hChHHHHHHh------hhhhhhhhhhhhHh-hhhhh
Confidence            345667778888888874 45543 455888888888887776 3445555444      78888888888774 45557


Q ss_pred             cCCCCCcEEEccCCCCC-CCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCC
Q 040254          127 GNCSRLKSFQAGYSNLL-RSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK  205 (555)
Q Consensus       127 ~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~  205 (555)
                      ..++.|+.+.+..|++- .-+|..+.++..|+.||+++|+++. .|..+..-+++-.|+|++|.|.++....|.+++.|-
T Consensus        75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            77888888888877653 4577788888888888888888876 466677778888888888888644444567788888


Q ss_pred             eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccc-ccccccccCCCCCcEEEccc
Q 040254          206 YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT-GSFLLTLTSCRLLTALRLAC  284 (555)
Q Consensus       206 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~  284 (555)
                      .|||++|++. .+|..+..+..|++|.+++|++. ......+..+++|+.|.+++.+-+ ...|..+..+.+|..++++.
T Consensus       154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             hhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence            8888888887 66777788888888888888775 333334556667777777765433 23566667777777777777


Q ss_pred             ceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcE
Q 040254          285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEV  364 (555)
Q Consensus       285 n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  364 (555)
                      |.+. .+|+.+.+                                     .++|+.|++++|+|+ .+....+.-.+|++
T Consensus       232 N~Lp-~vPecly~-------------------------------------l~~LrrLNLS~N~it-eL~~~~~~W~~lEt  272 (1255)
T KOG0444|consen  232 NNLP-IVPECLYK-------------------------------------LRNLRRLNLSGNKIT-ELNMTEGEWENLET  272 (1255)
T ss_pred             cCCC-cchHHHhh-------------------------------------hhhhheeccCcCcee-eeeccHHHHhhhhh
Confidence            7665 45554443                                     344555555566555 23333334446666


Q ss_pred             EEccCCccccccCccccCCCCCcEEEccCccCc-cccchhhhccccchhhhccCCCCCCCCCccccCCCccccccccccc
Q 040254          365 LLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS-GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIF  443 (555)
Q Consensus       365 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  443 (555)
                      |+++.|+++ .+|.++..+++|+.|.+.+|+++ ..+|..++.|..|.+                               
T Consensus       273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev-------------------------------  320 (1255)
T KOG0444|consen  273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV-------------------------------  320 (1255)
T ss_pred             hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH-------------------------------
Confidence            666666666 66666666666666666666665 245556666555553                               


Q ss_pred             CCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCC
Q 040254          444 GLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNH  503 (555)
Q Consensus       444 ~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~  503 (555)
                           +..++|.+. .+|..++.|..|+.|.|++|++- ..|+.+.-++.|+.||++.|.
T Consensus       321 -----f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  321 -----FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             -----HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence                 455555555 67777777777777777777776 677777777777777777775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.95  E-value=1.6e-30  Score=263.14  Aligned_cols=440  Identities=25%  Similarity=0.291  Sum_probs=246.2

Q ss_pred             eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccc
Q 040254           20 ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSL   99 (555)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~   99 (555)
                      .+........+.+++..|.+...-.....+.-+|++|++++|.++ ..|..+- .+++|+.|.++.|-|...+ ....  
T Consensus        14 p~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it-~l~~L~~ln~s~n~i~~vp-~s~~--   88 (1081)
T KOG0618|consen   14 PEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQIT-LLSHLRQLNLSRNYIRSVP-SSCS--   88 (1081)
T ss_pred             chhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhh-hHHHHhhcccchhhHhhCc-hhhh--
Confidence            334444445666666666665544445566677999999999887 7776543 4888999999998877433 2222  


Q ss_pred             cccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc---------------
Q 040254          100 AWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN---------------  164 (555)
Q Consensus       100 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n---------------  164 (555)
                          .+.+|++++|.+|.+. ..|..+..+.+|++|++++|.+. .+|..+..+..+.++..++|               
T Consensus        89 ----~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~  162 (1081)
T KOG0618|consen   89 ----NMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLD  162 (1081)
T ss_pred             ----hhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhh
Confidence                5668999999988887 48888888999999999987654 45555555555555555554               


Q ss_pred             ----cCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254          165 ----KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG  240 (555)
Q Consensus       165 ----~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  240 (555)
                          .+....+.++..++.  .|++++|.+. .  ..+..+.+|+.+....|.+....    -.-++++.|+.++|.+..
T Consensus       163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~  233 (1081)
T KOG0618|consen  163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTT  233 (1081)
T ss_pred             hhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCccee
Confidence                333333333333333  4666666654 1  12445555666666555554211    123567777777777662


Q ss_pred             ccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccc---------------cccC
Q 040254          241 NLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL---------------ILMG  305 (555)
Q Consensus       241 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l---------------~~~~  305 (555)
                       .  .......+|+.++++.|.+.+.. +++..+++|+.+....|.+. .+|..+...+++               ...+
T Consensus       234 -~--~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~  308 (1081)
T KOG0618|consen  234 -L--DVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEG  308 (1081)
T ss_pred             -e--ccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccc
Confidence             1  12334567888888888887544 78888888888888888774 444443333222               1223


Q ss_pred             CCCCcEEEeccccCCCCCCccccccccCCC-CCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCC
Q 040254          306 CKNLNVLFLTMNFMNEATPNYDQNKISDGF-QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP  384 (555)
Q Consensus       306 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  384 (555)
                      .+.|+.|++..|.+...+...+     ... .+++.|..+.+++.......=...+.|+.|.+.+|.+++.....+.+..
T Consensus       309 ~~sL~tLdL~~N~L~~lp~~~l-----~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~  383 (1081)
T KOG0618|consen  309 LKSLRTLDLQSNNLPSLPDNFL-----AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK  383 (1081)
T ss_pred             cceeeeeeehhccccccchHHH-----hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence            4456666666666655544221     101 1122223333322211100001123455555555555554444455555


Q ss_pred             CCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhc
Q 040254          385 SLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET  464 (555)
Q Consensus       385 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~  464 (555)
                      .|+.|+|++|.+.......+.++..|.                                    .|+||+|+++ .+|...
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~Le------------------------------------eL~LSGNkL~-~Lp~tv  426 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELE------------------------------------ELNLSGNKLT-TLPDTV  426 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhH------------------------------------HHhcccchhh-hhhHHH
Confidence            555555555555522223334444443                                    3555555555 445555


Q ss_pred             cCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcC
Q 040254          465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPE  532 (555)
Q Consensus       465 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~  532 (555)
                      ..++.|++|...+|+|. ..| .+.++++|+.+|+|.|+|+...+....|+    ..+..++++||+|
T Consensus       427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~----p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS----PNLKYLDLSGNTR  488 (1081)
T ss_pred             HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC----cccceeeccCCcc
Confidence            55555555555555555 444 45555555555555555554444444443    3455555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=3.3e-30  Score=249.89  Aligned_cols=394  Identities=24%  Similarity=0.289  Sum_probs=311.2

Q ss_pred             ccCCCCCcc-ccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccE
Q 040254           32 QPAMNKLVQ-RYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL  110 (555)
Q Consensus        32 ~~~~~~~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~  110 (555)
                      .+++.|.++ +..|.+...+++++-|.|....+. .+|+. .+.+.+|++|.+++|++... -+.+.      .++.||.
T Consensus        12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~v-hGELs------~Lp~LRs   82 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLISV-HGELS------DLPRLRS   82 (1255)
T ss_pred             ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHhh-hhhhc------cchhhHH
Confidence            357778888 667888999999999999999998 89986 55599999999999998843 23333      4569999


Q ss_pred             EEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCc
Q 040254          111 LDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKE  189 (555)
Q Consensus       111 L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~  189 (555)
                      +++.+|+++. -+|..+..+..|..|||++|++ ...|..+...+++-.|++++|+|..++...|.+++.|-.|||++|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            9999999975 5788888999999999998874 5678999999999999999999999888889999999999999999


Q ss_pred             cccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCc-cccCcccccCCCCCcEEEccccccccccc
Q 040254          190 LIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA-GNLSAYNFSVLSQLETIDLYINMFTGSFL  268 (555)
Q Consensus       190 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  268 (555)
                      +. .+|.....+..|+.|+|++|.+...--..+..+++|+.|++++.+-+ ..+| ..+.++.+|+.++++.|.+. ..|
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P-tsld~l~NL~dvDlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP-TSLDDLHNLRDVDLSENNLP-IVP  238 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC-CchhhhhhhhhccccccCCC-cch
Confidence            85 66777889999999999999986433334556778889999886533 2455 56888999999999999987 578


Q ss_pred             ccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccc
Q 040254          269 LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQL  348 (555)
Q Consensus       269 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i  348 (555)
                      +++..+++|+.|++++|+++.....         .                             +...+|++|+++.|++
T Consensus       239 ecly~l~~LrrLNLS~N~iteL~~~---------~-----------------------------~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKITELNMT---------E-----------------------------GEWENLETLNLSRNQL  280 (1255)
T ss_pred             HHHhhhhhhheeccCcCceeeeecc---------H-----------------------------HHHhhhhhhccccchh
Confidence            8899999999999999988721100         0                             3356778888888888


Q ss_pred             ccccchhhhCCCCCcEEEccCCcccc-ccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCcc
Q 040254          349 TGQVPLWLSKLTKLEVLLLSGNQITG-SIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFF  427 (555)
Q Consensus       349 ~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~  427 (555)
                      + .+|.+++.++.|+.|.+.+|+++- -+|.+++.+..|+++...+|.+. .+|+.++.+..|.                
T Consensus       281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~----------------  342 (1255)
T KOG0444|consen  281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ----------------  342 (1255)
T ss_pred             c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH----------------
Confidence            8 788888888999999988888873 47788888888999998888887 7888888777776                


Q ss_pred             ccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCC
Q 040254          428 LFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSEN  507 (555)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  507 (555)
                                          .|.|+.|++- .+|.++.-++.|++||+..|.-.-..|.--..-++|+.-++..--=.+.
T Consensus       343 --------------------kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~Ql  401 (1255)
T KOG0444|consen  343 --------------------KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQL  401 (1255)
T ss_pred             --------------------Hhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHH
Confidence                                4778888877 6788888889999999999975523332212224565555543222233


Q ss_pred             cceecCCC
Q 040254          508 NLQGPIPS  515 (555)
Q Consensus       508 ~l~~~ip~  515 (555)
                      .+.|..|.
T Consensus       402 rlAG~~pa  409 (1255)
T KOG0444|consen  402 RLAGQMPA  409 (1255)
T ss_pred             hhccCCcc
Confidence            56676664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=4.1e-29  Score=252.91  Aligned_cols=404  Identities=26%  Similarity=0.283  Sum_probs=293.5

Q ss_pred             eeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCcccc--------
Q 040254           29 ILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLA--------  100 (555)
Q Consensus        29 ~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--------  100 (555)
                      +..+.++.|-|. ..|.+..++.+|+++.|.+|.+. .+|.+ +..+.+|++||+|+|++...+. .+..+.        
T Consensus        70 L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~-~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s  145 (1081)
T KOG0618|consen   70 LRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPAS-ISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAAS  145 (1081)
T ss_pred             HhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchh-HHhhhcccccccchhccCCCch-hHHhhhHHHHHhhh
Confidence            455566656555 44577888889999999988887 77765 5668999999999998874332 221111        


Q ss_pred             ------ccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccc
Q 040254          101 ------WNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDI  174 (555)
Q Consensus       101 ------~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  174 (555)
                            .. .-..++.+++..|.+.+.++..+..+.+  .|+|++|.+..   ..+..+..|+.+....|+++.+    .
T Consensus       146 ~N~~~~~l-g~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l----~  215 (1081)
T KOG0618|consen  146 NNEKIQRL-GQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSEL----E  215 (1081)
T ss_pred             cchhhhhh-ccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceE----E
Confidence                  00 0112455555555555444444554544  57777776551   2455667777777777776653    2


Q ss_pred             cCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCc
Q 040254          175 INLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLE  254 (555)
Q Consensus       175 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  254 (555)
                      ..-++|+.|+.+.|.++...+..  .-.+|+++++++|.+. .+|+|+..+.+|+.+...+|.++ .++. ......+|+
T Consensus       216 ~~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~-ri~~~~~L~  290 (1081)
T KOG0618|consen  216 ISGPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL-RISRITSLV  290 (1081)
T ss_pred             ecCcchheeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH-HHhhhhhHH
Confidence            23477888999888887444322  2468999999999998 56799999999999999999996 6663 455678999


Q ss_pred             EEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCC
Q 040254          255 TIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG  334 (555)
Q Consensus       255 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  334 (555)
                      .+.+..|.+... +....+...|++|++..|.+. ..|+.+.....      ..++.++.+.|.+...+....     ..
T Consensus       291 ~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~------~~l~~ln~s~n~l~~lp~~~e-----~~  357 (1081)
T KOG0618|consen  291 SLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLN------ASLNTLNVSSNKLSTLPSYEE-----NN  357 (1081)
T ss_pred             HHHhhhhhhhhC-CCcccccceeeeeeehhcccc-ccchHHHhhhh------HHHHHHhhhhccccccccccc-----hh
Confidence            999999998854 445677899999999999988 55553332211      135666667776665552221     45


Q ss_pred             CCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhh
Q 040254          335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQ  414 (555)
Q Consensus       335 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~  414 (555)
                      ++.|+.|.+.+|.+++.....+.+.++|+.|+|++|++.......+.+++.|++|+||||+++ .+|....++..|+   
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~---  433 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH---  433 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH---
Confidence            677999999999999888888999999999999999999666667889999999999999998 7778877777776   


Q ss_pred             ccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccC
Q 040254          415 NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTIL  494 (555)
Q Consensus       415 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  494 (555)
                                                       +|...+|++. ..| .+.+++.|+++|+|.|.++...-......++|
T Consensus       434 ---------------------------------tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L  478 (1081)
T KOG0618|consen  434 ---------------------------------TLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL  478 (1081)
T ss_pred             ---------------------------------HHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence                                             4777788887 667 78889999999999999885543333344789


Q ss_pred             CeeeCCCCC
Q 040254          495 ERLDLSKNH  503 (555)
Q Consensus       495 ~~L~Ls~N~  503 (555)
                      ++||++||.
T Consensus       479 kyLdlSGN~  487 (1081)
T KOG0618|consen  479 KYLDLSGNT  487 (1081)
T ss_pred             ceeeccCCc
Confidence            999999998

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=2e-28  Score=225.63  Aligned_cols=303  Identities=20%  Similarity=0.189  Sum_probs=210.7

Q ss_pred             CCCCceEeccc---CcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEE
Q 040254            6 AAGGQIISCHT---EKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIID   82 (555)
Q Consensus         6 ~~~~~~~~c~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   82 (555)
                      .++++.|.|..   ..+.|+..|              -..+|..+..  ....++|..|.|+ .||+.+|+.+++|+.||
T Consensus        35 ~~CP~pC~Cs~~~g~~VdCr~~G--------------L~eVP~~LP~--~tveirLdqN~I~-~iP~~aF~~l~~LRrLd   97 (498)
T KOG4237|consen   35 SACPAPCTCSDVEGGIVDCRGKG--------------LTEVPANLPP--ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLD   97 (498)
T ss_pred             ccCCCCcccCCCCCceEEccCCC--------------cccCcccCCC--cceEEEeccCCcc-cCChhhccchhhhceec
Confidence            47778888887   667888776              4556666544  5677888899998 89999999999999999


Q ss_pred             ccCCcCccccCCCCccccccCCCCCccEE-EccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEe
Q 040254           83 LSYNSLSGELTGLIPSLAWNHSFCSMRLL-DFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSL  161 (555)
Q Consensus        83 Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L-~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l  161 (555)
                      ||+|+|+.+.|+.|..+.      .|-.| ..++|+|+...-.+|+++..|+.|.+.-|.+.......|..++.+..|.+
T Consensus        98 LS~N~Is~I~p~AF~GL~------~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsl  171 (498)
T KOG4237|consen   98 LSKNNISFIAPDAFKGLA------SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSL  171 (498)
T ss_pred             ccccchhhcChHhhhhhH------hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcc
Confidence            999999988888887655      54444 44458888755577899999999999888888777888999999999999


Q ss_pred             ecccCcccccccccCCCCCcEEEcccCccc------------cCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCC
Q 040254          162 HFNKLSGFISNDIINLTSLLVLELYSKELI------------GSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK  229 (555)
Q Consensus       162 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~------------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~  229 (555)
                      ..|.+..+....|..+..++.+.+..|...            ...|..++......-..+.+.++....+..+...  ++
T Consensus       172 yDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~e  249 (498)
T KOG4237|consen  172 YDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LE  249 (498)
T ss_pred             cchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh--HH
Confidence            999998877778999999999988887732            2223334444455555555555543333322221  22


Q ss_pred             EE---ECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCC
Q 040254          230 TL---NLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGC  306 (555)
Q Consensus       230 ~L---~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~  306 (555)
                      .+   ....+...+..|...|..+++|+.|++++|+++++...+|.....+++|.+..|++.        .+....|.+.
T Consensus       250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~--------~v~~~~f~~l  321 (498)
T KOG4237|consen  250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE--------FVSSGMFQGL  321 (498)
T ss_pred             hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH--------HHHHHhhhcc
Confidence            22   122232334566677888899999999999988888888888888888888888776        2333334455


Q ss_pred             CCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254          307 KNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC  346 (555)
Q Consensus       307 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  346 (555)
                      .+|+.|++++|+|+...+.++     ....+|.+|.+-.|
T Consensus       322 s~L~tL~L~~N~it~~~~~aF-----~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  322 SGLKTLSLYDNQITTVAPGAF-----QTLFSLSTLNLLSN  356 (498)
T ss_pred             ccceeeeecCCeeEEEecccc-----cccceeeeeehccC
Confidence            555555555555555544443     44444555554444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=7.5e-27  Score=215.28  Aligned_cols=372  Identities=23%  Similarity=0.214  Sum_probs=245.9

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeec-ccCcccccccccCCCCCcEEEc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF-NKLSGFISNDIINLTSLLVLEL  185 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L  185 (555)
                      .-..++|..|+|+.+.+.+|+.+++||+|||++|.+..+.|.+|.+++.+.+|.+.+ |+|+.+..+.|.++..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            567788888888877778888888888888888888888888888888887777666 8888888888888888888888


Q ss_pred             ccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcccc--C---------cccccCCCCCc
Q 040254          186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNL--S---------AYNFSVLSQLE  254 (555)
Q Consensus       186 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~---------~~~~~~l~~L~  254 (555)
                      ..|++.....+.|..++++..|.+..|.+.......|..+..++++++..|++.+.-  +         ...+++.....
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            888888777788888888888888888887444457888888888888888744211  1         01223333333


Q ss_pred             EEEcccccccccccccccCCCCCcEE--Ecccce-ecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccc
Q 040254          255 TIDLYINMFTGSFLLTLTSCRLLTAL--RLACNQ-LEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKI  331 (555)
Q Consensus       255 ~L~l~~n~~~~~~~~~l~~~~~L~~L--~l~~n~-~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  331 (555)
                      ...+.+..+.......+...  ++.+  .+.... ..+..|       ...|.+.++|+++++++|.++.+...++    
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP-------~~cf~~L~~L~~lnlsnN~i~~i~~~aF----  294 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICP-------AKCFKKLPNLRKLNLSNNKITRIEDGAF----  294 (498)
T ss_pred             hHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcCh-------HHHHhhcccceEeccCCCccchhhhhhh----
Confidence            33344444433333222211  2211  111111 111112       2237778899999999999998887776    


Q ss_pred             cCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc-----cccchh---
Q 040254          332 SDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS-----GEFPKE---  403 (555)
Q Consensus       332 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~---  403 (555)
                       .+...+++|.+..|++...-...|.++..|+.|+|++|+|+...|.+|..+.+|.+|++-.|++.     ..+.++   
T Consensus       295 -e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~  373 (498)
T KOG4237|consen  295 -EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK  373 (498)
T ss_pred             -cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence             88889999999999998777788899999999999999999889999999999999999888764     111111   


Q ss_pred             -----------hhccccchhhhccCCCCCCCCCccccCCCccccccccccc----CCCCEEEccCccccccCChhccCCC
Q 040254          404 -----------LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIF----GLRPTIFLANNSLSGRIPAETGQLK  468 (555)
Q Consensus       404 -----------~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~L~~n~l~~~~~~~~~~l~  468 (555)
                                 ...++.+.+++..+......-+       +..........    .-..+..-.+|+....+|..+.  .
T Consensus       374 ~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~-------ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~  444 (498)
T KOG4237|consen  374 KSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGP-------EELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--V  444 (498)
T ss_pred             CCCCCCCCCCCCchhccccchhccccccccCCc-------cccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--c
Confidence                       2233344444444332221100       00000000000    0011233333443335554332  3


Q ss_pred             CCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          469 FLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       469 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      ..++|++.+|.++ .+|+.  .+.+| .+|+++|+|+
T Consensus       445 d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~  477 (498)
T KOG4237|consen  445 DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS  477 (498)
T ss_pred             hhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence            4678888888888 66666  55677 8888888886

>PLN03210 Resistant to P

Probab=99.90  E-value=2.5e-22  Score=226.36  Aligned_cols=350  Identities=22%  Similarity=0.210  Sum_probs=227.7

Q ss_pred             cCchhHHhcCCCCCEEEccCCcCc------cccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccC
Q 040254           66 PLPINSFHFLTLLEIIDLSYNSLS------GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGY  139 (555)
Q Consensus        66 ~i~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~  139 (555)
                      .+...+|.++++|+.|.+..+.+.      ...|..+..+     ..+|+.|++.++.++. +|..+ ...+|+.|++.+
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l-----p~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~  620 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL-----PPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQG  620 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccccccceeecCcchhhc-----CcccEEEEecCCCCCC-CCCcC-CccCCcEEECcC
Confidence            356677888999999888765432      1222222211     1368888888888774 66665 467888888887


Q ss_pred             CCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCC
Q 040254          140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLP  219 (555)
Q Consensus       140 ~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  219 (555)
                      +.+ ..++..+..+++|+.|+++++......| .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|
T Consensus       621 s~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        621 SKL-EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             ccc-cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence            664 4566667778888888888764333233 36777888888888877667777777888888888888765443555


Q ss_pred             ccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcc
Q 040254          220 SSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLK  299 (555)
Q Consensus       220 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~  299 (555)
                      ..+ .+++|+.|++++|.....++.    ...+|+.|++++|.+... +..+ .+++|++|.+..+... .+...+    
T Consensus       699 ~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~-~l~~~~----  766 (1153)
T PLN03210        699 TGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSE-KLWERV----  766 (1153)
T ss_pred             CcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccc-cccc-cccccccccccccchh-hccccc----
Confidence            544 567788888887754433331    235677777777766532 2222 3455666655543211 000000    


Q ss_pred             cccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCcc
Q 040254          300 SLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW  379 (555)
Q Consensus       300 ~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  379 (555)
                                          ....+.     ....+++|+.|++++|.....+|.+++.+++|+.|++++|.....+|..
T Consensus       767 --------------------~~l~~~-----~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~  821 (1153)
T PLN03210        767 --------------------QPLTPL-----MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG  821 (1153)
T ss_pred             --------------------cccchh-----hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence                                000000     0133567888899888766678888889999999999988655466665


Q ss_pred             ccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc
Q 040254          380 FGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR  459 (555)
Q Consensus       380 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~  459 (555)
                      + .+++|+.|++++|.....+|....+++                                       .|++++|.++ .
T Consensus       822 ~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~---------------------------------------~L~Ls~n~i~-~  860 (1153)
T PLN03210        822 I-NLESLESLDLSGCSRLRTFPDISTNIS---------------------------------------DLNLSRTGIE-E  860 (1153)
T ss_pred             C-CccccCEEECCCCCccccccccccccC---------------------------------------EeECCCCCCc-c
Confidence            5 688899999998865544443322222                                       4677777776 5


Q ss_pred             CChhccCCCCCCeeeCCCc-cceeecchhhhCCccCCeeeCCCCC
Q 040254          460 IPAETGQLKFLNVLDLGNN-NFAGSIPNQISQLTILERLDLSKNH  503 (555)
Q Consensus       460 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~Ls~N~  503 (555)
                      +|.++..+++|++|++++| .++ .+|..+..+++|+.+++++|.
T Consensus       861 iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        861 VPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            7777788888888888874 454 566677777888888888774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=3.7e-21  Score=216.87  Aligned_cols=333  Identities=19%  Similarity=0.178  Sum_probs=241.2

Q ss_pred             CCccccCCCCCCEEEccCCcC------cCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC
Q 040254           43 HLPSIGNLTHISHLNLSHNHV------HGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN  116 (555)
Q Consensus        43 ~~~~~~~l~~L~~L~L~~n~~------~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n  116 (555)
                      ...+|..+++|+.|.+.++..      ...+|.++..-.++|+.|.+.++.+... |..+       ...+|++|+++++
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-------~~~~L~~L~L~~s  621 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-------RPENLVKLQMQGS  621 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-------CccCCcEEECcCc
Confidence            345689999999999976532      2245655444335699999999988743 3333       2348999999999


Q ss_pred             cCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCc
Q 040254          117 DFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPR  196 (555)
Q Consensus       117 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  196 (555)
                      .+. .++..+..+++|+.|+++++.....+| .+..+++|++|++++|......|..+..+++|+.|++++|.....+|.
T Consensus       622 ~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        622 KLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             ccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            988 477788899999999999887777777 478899999999999876556788899999999999999877777776


Q ss_pred             CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc-------ccc
Q 040254          197 DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS-------FLL  269 (555)
Q Consensus       197 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------~~~  269 (555)
                      .+ .+++|+.|++++|.....+|..   ..+|++|++.+|.+. .+|..  ..+++|+.|.+.++.....       .+.
T Consensus       700 ~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~  772 (1153)
T PLN03210        700 GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEKLWERVQPLTPL  772 (1153)
T ss_pred             cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc--ccccccccccccccchhhccccccccchh
Confidence            55 6899999999998765455543   468999999999876 56632  2578888888876432211       111


Q ss_pred             cccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEecccc-CCCCCCccccccccCCCCCccEEEccCccc
Q 040254          270 TLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNF-MNEATPNYDQNKISDGFQNLRAVSLAGCQL  348 (555)
Q Consensus       270 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i  348 (555)
                      .....++|+.|++++|...+.+|..+.        .+++|+.|++++|. +...+..       ..+++|+.|++++|..
T Consensus       773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~--------~L~~L~~L~Ls~C~~L~~LP~~-------~~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        773 MTMLSPSLTRLFLSDIPSLVELPSSIQ--------NLHKLEHLEIENCINLETLPTG-------INLESLESLDLSGCSR  837 (1153)
T ss_pred             hhhccccchheeCCCCCCccccChhhh--------CCCCCCEEECCCCCCcCeeCCC-------CCccccCEEECCCCCc
Confidence            223357899999999877667776544        45578888887764 3332221       2467888999988755


Q ss_pred             ccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccch
Q 040254          349 TGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLV  411 (555)
Q Consensus       349 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  411 (555)
                      ...+|..   ..+|++|++++|.+. .+|..+..+++|++|++++|+-...+|.....++.|.
T Consensus       838 L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~  896 (1153)
T PLN03210        838 LRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE  896 (1153)
T ss_pred             ccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence            4344432   357888999998887 6777888888999999988654445555554444443

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=3.8e-19  Score=186.51  Aligned_cols=39  Identities=18%  Similarity=0.276  Sum_probs=21.3

Q ss_pred             EEccCccccccCChhccCCCCCCeeeCCCccceeecchhh
Q 040254          449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQI  488 (555)
Q Consensus       449 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  488 (555)
                      |++++|+++ .+|..+..++.|+.|+|++|.+++..+..+
T Consensus       427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            445555555 445555555555566666665555555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=5e-19  Score=185.65  Aligned_cols=272  Identities=22%  Similarity=0.238  Sum_probs=189.7

Q ss_pred             CCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCC
Q 040254           76 TLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAAS  155 (555)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~  155 (555)
                      ..-..|+++.+.++. .|..++.        +|+.|++++|+++. +|.   ..++|++|++++|++.. +|..   .++
T Consensus       201 ~~~~~LdLs~~~Lts-LP~~l~~--------~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~s  263 (788)
T PRK15387        201 NGNAVLNVGESGLTT-LPDCLPA--------HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPG  263 (788)
T ss_pred             CCCcEEEcCCCCCCc-CCcchhc--------CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccc
Confidence            446678888887773 4444432        67888888888774 553   24678888888776553 4432   357


Q ss_pred             CCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcC
Q 040254          156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG  235 (555)
Q Consensus       156 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  235 (555)
                      |+.|++++|.++.+..    -.++|+.|++++|++. .+|..   .++|+.|++++|.+.+ +|..   ...|+.|++.+
T Consensus       264 L~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~  331 (788)
T PRK15387        264 LLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN  331 (788)
T ss_pred             cceeeccCCchhhhhh----chhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---ccccccccccc
Confidence            7788888887775432    2256778888888776 34432   3678888888888873 4432   23577788888


Q ss_pred             ccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEec
Q 040254          236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLT  315 (555)
Q Consensus       236 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~  315 (555)
                      |.+. .+|.    ...+|+.|++++|.++....    ...+|+.|++++|++. .+|..           ..+|+.|+++
T Consensus       332 N~L~-~LP~----lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~-~LP~l-----------~~~L~~LdLs  390 (788)
T PRK15387        332 NQLT-SLPT----LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL-----------PSGLKELIVS  390 (788)
T ss_pred             Cccc-cccc----cccccceEecCCCccCCCCC----CCcccceehhhccccc-cCccc-----------ccccceEEec
Confidence            8776 4542    22578888888888875332    1356778888888877 34431           1368888999


Q ss_pred             cccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCcc
Q 040254          316 MNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN  395 (555)
Q Consensus       316 ~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  395 (555)
                      +|.++..+.         .+++|+.|++++|.++ .+|..   +.+|+.|++++|+++ .+|..+..+++|+.|+|++|+
T Consensus       391 ~N~Lt~LP~---------l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        391 GNRLTSLPV---------LPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CCcccCCCC---------cccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence            988876542         2467999999999988 45643   346888999999998 778888899999999999999


Q ss_pred             Cccccchhhhccccch
Q 040254          396 ISGEFPKELSRLQPLV  411 (555)
Q Consensus       396 l~~~~~~~~~~l~~L~  411 (555)
                      +++..+..+..+....
T Consensus       457 Ls~~~~~~L~~l~s~~  472 (788)
T PRK15387        457 LSERTLQALREITSAP  472 (788)
T ss_pred             CCchHHHHHHHHhcCc
Confidence            9988777775554443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.4e-18  Score=170.78  Aligned_cols=106  Identities=23%  Similarity=0.210  Sum_probs=54.9

Q ss_pred             EEEccCCcCccc-cCCCCccccccCCCCCccEEEccCCcCCc----cCCccccCCCCCcEEEccCCCCCC------CCcH
Q 040254           80 IIDLSYNSLSGE-LTGLIPSLAWNHSFCSMRLLDFSYNDFSS----QVPPRLGNCSRLKSFQAGYSNLLR------SLPD  148 (555)
Q Consensus        80 ~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~~~~~~------~~~~  148 (555)
                      .|+|.++.+++. ....++.      +..|++|+++++.++.    .++..+...+.+++++++++....      .++.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~------l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~   75 (319)
T cd00116           2 QLSLKGELLKTERATELLPK------LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ   75 (319)
T ss_pred             ccccccCcccccchHHHHHH------HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH
Confidence            466666666632 2222222      3357777777777643    134445566667777777655431      1223


Q ss_pred             hhhcCCCCCeeEeecccCcccccccccCCCC---CcEEEcccCccc
Q 040254          149 DIYAAASLEEPSLHFNKLSGFISNDIINLTS---LLVLELYSKELI  191 (555)
Q Consensus       149 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~L~~n~~~  191 (555)
                      .+.++++|++|++++|.+....+..+..+..   |++|++++|.+.
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence            4445556666666665554333333333332   555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.8e-18  Score=169.99  Aligned_cols=159  Identities=20%  Similarity=0.187  Sum_probs=95.5

Q ss_pred             EEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc------cCCccccC
Q 040254           55 HLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS------QVPPRLGN  128 (555)
Q Consensus        55 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~------~~~~~~~~  128 (555)
                      .|+|+.+.+++.--...|..++.|++|+++++.++......++...  ...+.+++++++++.+.+      .++..+..
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l--~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL--RPQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH--hhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            4566666665332334566677777777777777543222222211  134467777777776651      23345667


Q ss_pred             CCCCcEEEccCCCCCCCCcHhhhcCCC---CCeeEeecccCccc----ccccccCC-CCCcEEEcccCccccC----CCc
Q 040254          129 CSRLKSFQAGYSNLLRSLPDDIYAAAS---LEEPSLHFNKLSGF----ISNDIINL-TSLLVLELYSKELIGS----IPR  196 (555)
Q Consensus       129 l~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~l~~n~i~~~----~~~~~~~l-~~L~~L~L~~n~~~~~----~~~  196 (555)
                      +++|++|++++|.+....+..+..+..   |++|++++|+++..    ....+..+ ++|+.|++++|.+++.    +..
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            888888888888776666666655555   89999998887632    12234455 6777777777776532    122


Q ss_pred             CccCCCCCCeeeCccCcCc
Q 040254          197 DIGKLTNLKYLLLYRNNLS  215 (555)
Q Consensus       197 ~l~~l~~L~~L~L~~n~l~  215 (555)
                      .+..+++|++|++++|.+.
T Consensus       160 ~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         160 ALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHhCCCcCEEECcCCCCc
Confidence            3344455666666665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=5e-17  Score=171.82  Aligned_cols=53  Identities=19%  Similarity=0.358  Sum_probs=26.2

Q ss_pred             EEccCccccccCChhccCCCCCCeeeCCCccceeecchhhh----CCccCCeeeCCCCCCC
Q 040254          449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQIS----QLTILERLDLSKNHLS  505 (555)
Q Consensus       449 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~l~~L~~L~Ls~N~l~  505 (555)
                      |++++|.++ .+|..+.  ..|+.|++++|+|+ .+|..+.    .++.+..|++.+|+|+
T Consensus       372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            555555555 2333332  24555666666655 3333322    2355566666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.69  E-value=2.7e-16  Score=166.30  Aligned_cols=244  Identities=25%  Similarity=0.326  Sum_probs=138.4

Q ss_pred             CCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcC
Q 040254          156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG  235 (555)
Q Consensus       156 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  235 (555)
                      ...|+++++.++.+ |..+.  +.++.|++++|.+. .+|..+.  ++|+.|++++|.++ .+|..+.  .+|+.|++++
T Consensus       180 ~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLTTI-PACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            44555555555542 22221  34555555555554 2333322  35666666666555 3343332  2466666666


Q ss_pred             ccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEec
Q 040254          236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLT  315 (555)
Q Consensus       236 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~  315 (555)
                      |.+. .+|.. +  ..+|+.|++++|.+... +..+  .++|+.|++++|+++ .+|..+.          .+|+.|+++
T Consensus       251 N~L~-~LP~~-l--~s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~lp----------~sL~~L~Ls  312 (754)
T PRK15370        251 NRIT-ELPER-L--PSALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIR-TLPAHLP----------SGITHLNVQ  312 (754)
T ss_pred             CccC-cCChh-H--hCCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccc-cCcccch----------hhHHHHHhc
Confidence            6555 44421 1  23566666666665532 2222  135666666666665 2332211          246666777


Q ss_pred             cccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCcc
Q 040254          316 MNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN  395 (555)
Q Consensus       316 ~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  395 (555)
                      +|.++..+..        .+++|+.|++++|.++. +|..+.  ++|+.|++++|++. .+|..+  .++|++|+|++|+
T Consensus       313 ~N~Lt~LP~~--------l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~  378 (754)
T PRK15370        313 SNSLTALPET--------LPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNA  378 (754)
T ss_pred             CCccccCCcc--------ccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCc
Confidence            7777654321        23578888888888874 555443  68888999988887 566554  3688899999988


Q ss_pred             Cccccchhhh-ccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCCh----hccCCCCC
Q 040254          396 ISGEFPKELS-RLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPA----ETGQLKFL  470 (555)
Q Consensus       396 l~~~~~~~~~-~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~----~~~~l~~L  470 (555)
                      ++ .+|..+. .++.                                       |++++|+++ .+|.    .+..++.+
T Consensus       379 Lt-~LP~~l~~sL~~---------------------------------------LdLs~N~L~-~LP~sl~~~~~~~~~l  417 (754)
T PRK15370        379 LT-NLPENLPAALQI---------------------------------------MQASRNNLV-RLPESLPHFRGEGPQP  417 (754)
T ss_pred             CC-CCCHhHHHHHHH---------------------------------------HhhccCCcc-cCchhHHHHhhcCCCc
Confidence            88 4554443 3333                                       455555555 3333    33445777


Q ss_pred             CeeeCCCccce
Q 040254          471 NVLDLGNNNFA  481 (555)
Q Consensus       471 ~~L~Ls~N~l~  481 (555)
                      ..|++.+|.++
T Consensus       418 ~~L~L~~Npls  428 (754)
T PRK15370        418 TRIIVEYNPFS  428 (754)
T ss_pred             cEEEeeCCCcc
Confidence            88888888886

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=9.4e-18  Score=137.89  Aligned_cols=177  Identities=28%  Similarity=0.493  Sum_probs=143.2

Q ss_pred             CCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCC
Q 040254          306 CKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPS  385 (555)
Q Consensus       306 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  385 (555)
                      +..++.|.+++|.++..++..      ..+.+|+.|++.+|+++ ..|..++.+++|+.|+++-|++. ..|.+|+.+|.
T Consensus        32 ~s~ITrLtLSHNKl~~vppni------a~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNI------AELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             hhhhhhhhcccCceeecCCcH------HHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            345556666666666665544      45678899999999998 78888999999999999999998 89999999999


Q ss_pred             CcEEEccCccCcc-ccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhc
Q 040254          386 LFYFALSQNNISG-EFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET  464 (555)
Q Consensus       386 L~~L~L~~n~l~~-~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~  464 (555)
                      |+.|||++|.+.. .+|..|-.++.|+.                                    |+|++|.+. .+|...
T Consensus       104 levldltynnl~e~~lpgnff~m~tlra------------------------------------lyl~dndfe-~lp~dv  146 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRA------------------------------------LYLGDNDFE-ILPPDV  146 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHH------------------------------------HHhcCCCcc-cCChhh
Confidence            9999999999864 57777777777773                                    888999998 788999


Q ss_pred             cCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC-CCC---CCCCCCccCCCcCCC
Q 040254          465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG-GQL---HTFPPSSFEGNPEFC  534 (555)
Q Consensus       465 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~~~---~~l~~~~~~gNp~~c  534 (555)
                      +++++|+.|.+..|.+- ..|..++.+..|++|.+.+|+++      .+|.. ..+   ..-....++.|||+-
T Consensus       147 g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~------vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  147 GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT------VLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee------ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            99999999999999998 88999999999999999999997      66653 111   112233467799874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.1e-17  Score=135.86  Aligned_cols=165  Identities=32%  Similarity=0.515  Sum_probs=115.9

Q ss_pred             cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254           46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR  125 (555)
Q Consensus        46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  125 (555)
                      .+-++.+++.|.||+|+++ .+|+.+.. +.+|++|++++|+|+. .|..+++      +++|+.|++.-|++. ..|..
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie~-lp~~iss------l~klr~lnvgmnrl~-~lprg   97 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIEE-LPTSISS------LPKLRILNVGMNRLN-ILPRG   97 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhhh-cChhhhh------chhhhheecchhhhh-cCccc
Confidence            3445667788888888888 78877444 8888888888888874 4444443      448888888888877 57888


Q ss_pred             ccCCCCCcEEEccCCCCC-CCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCC
Q 040254          126 LGNCSRLKSFQAGYSNLL-RSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNL  204 (555)
Q Consensus       126 ~~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  204 (555)
                      |+.++.|+.||+.+|++. ..+|..|..++.|+.|.++.|.++- .|..++.+++|+.|.+..|.+. ..|..++.++.|
T Consensus        98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l  175 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL  175 (264)
T ss_pred             cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence            888888888888877764 3567777777777777777777653 4556677777777777666664 456666666666


Q ss_pred             CeeeCccCcCcccCCcccc
Q 040254          205 KYLLLYRNNLSGSLPSSMM  223 (555)
Q Consensus       205 ~~L~L~~n~l~~~~~~~l~  223 (555)
                      +.|++.+|+++ .+|..++
T Consensus       176 relhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  176 RELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             HHHhcccceee-ecChhhh
Confidence            66666666666 4444433

>PLN03150 hypothetical protein; Provisional

Probab=99.18  E-value=4.3e-11  Score=126.60  Aligned_cols=120  Identities=35%  Similarity=0.564  Sum_probs=103.5

Q ss_pred             CCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhc
Q 040254          385 SLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET  464 (555)
Q Consensus       385 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~  464 (555)
                      .++.|+|++|.+.+.+|..+..++.|.                                    .|+|++|.+++.+|..+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~------------------------------------~L~Ls~N~l~g~iP~~~  462 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQ------------------------------------SINLSGNSIRGNIPPSL  462 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCC------------------------------------EEECCCCcccCcCChHH
Confidence            478899999999999998888888887                                    59999999999999999


Q ss_pred             cCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC--CCCCCCCCCccCCCcCCCCcccCCCC
Q 040254          465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG--GQLHTFPPSSFEGNPEFCSDIANRSS  542 (555)
Q Consensus       465 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~l~~~~~~gNp~~c~~~~~~~~  542 (555)
                      ..+++|+.|+|++|++++.+|+.++.+++|+.|+|++|+++     |.+|..  .....+..+++.||+.+|+.+....|
T Consensus       463 ~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~-----g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS-----GRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc-----ccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            99999999999999999999999999999999999999886     788864  12234556789999999998776788


Q ss_pred             CCC
Q 040254          543 TTE  545 (555)
Q Consensus       543 ~~~  545 (555)
                      ...
T Consensus       538 ~~~  540 (623)
T PLN03150        538 GPH  540 (623)
T ss_pred             ccc
Confidence            643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=8.2e-12  Score=115.02  Aligned_cols=136  Identities=23%  Similarity=0.244  Sum_probs=79.5

Q ss_pred             CCCCCccEEEccCcccccc----cchhhhCCCCCcEEEccCCccccc----cCccccCCCCCcEEEccCccCccc----c
Q 040254          333 DGFQNLRAVSLAGCQLTGQ----VPLWLSKLTKLEVLLLSGNQITGS----IPGWFGNLPSLFYFALSQNNISGE----F  400 (555)
Q Consensus       333 ~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~  400 (555)
                      ...+.|+.+....|++...    +...|...+.|+.+.++.|.|...    +..++..+++|+.|||+.|-++..    +
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            3445566666666655421    234455566677777777766522    223456677777777777766521    1


Q ss_pred             chhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChh-----ccCCCCCCeeeC
Q 040254          401 PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAE-----TGQLKFLNVLDL  475 (555)
Q Consensus       401 ~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~-----~~~l~~L~~L~L  475 (555)
                      ...++.+++|+                                    .+++++|.+.......     -...+.|++|.+
T Consensus       234 akaL~s~~~L~------------------------------------El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l  277 (382)
T KOG1909|consen  234 AKALSSWPHLR------------------------------------ELNLGDCLLENEGAIAFVDALKESAPSLEVLEL  277 (382)
T ss_pred             HHHhcccchhe------------------------------------eecccccccccccHHHHHHHHhccCCCCceecc
Confidence            12233333333                                    3555555554332222     134678899999


Q ss_pred             CCccceee----cchhhhCCccCCeeeCCCCCC
Q 040254          476 GNNNFAGS----IPNQISQLTILERLDLSKNHL  504 (555)
Q Consensus       476 s~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l  504 (555)
                      .+|.|+..    +...+...+.|+.|+|++|++
T Consensus       278 ~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  278 AGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            99988732    334456678899999999998

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=4.9e-12  Score=116.47  Aligned_cols=93  Identities=27%  Similarity=0.390  Sum_probs=44.3

Q ss_pred             ccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhh-----hCCCCCcEEEccCCccccc--
Q 040254          303 LMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL-----SKLTKLEVLLLSGNQITGS--  375 (555)
Q Consensus       303 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~n~l~~~--  375 (555)
                      +..|++|+.|++.+|-++..........+ ..+++|+.|++++|.+......++     ...++|+.|.+.+|.++..  
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL-~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKAL-SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHh-cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            33444444444444444433322222222 344556666666665543322222     2245666666666666532  


Q ss_pred             --cCccccCCCCCcEEEccCccC
Q 040254          376 --IPGWFGNLPSLFYFALSQNNI  396 (555)
Q Consensus       376 --~~~~~~~l~~L~~L~L~~n~l  396 (555)
                        +...+...+.|+.|+|++|.+
T Consensus       288 ~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  288 LALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHhcchhhHHhcCCcccc
Confidence              112233456666666666666

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.7e-11  Score=116.03  Aligned_cols=225  Identities=22%  Similarity=0.218  Sum_probs=130.5

Q ss_pred             cCCCCCccccCCccc----cCCCCCCEEEccCCcCcCcCch-hHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCC
Q 040254           33 PAMNKLVQRYHLPSI----GNLTHISHLNLSHNHVHGPLPI-NSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS  107 (555)
Q Consensus        33 ~~~~~~i~~~~~~~~----~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  107 (555)
                      .+++..+.+.....+    .++.+||.+.|.+..+. ..+. ...+.|++++.||||+|=|..    ..+-......+++
T Consensus        99 si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~n----w~~v~~i~eqLp~  173 (505)
T KOG3207|consen   99 SISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHN----WFPVLKIAEQLPS  173 (505)
T ss_pred             hhcCceeEEecHHHHHHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHh----HHHHHHHHHhccc
Confidence            344444444444333    25778888888887776 3442 466778888888888886653    2222223336678


Q ss_pred             ccEEEccCCcCCccCCcc-ccCCCCCcEEEccCCCCCCCC-cHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEc
Q 040254          108 MRLLDFSYNDFSSQVPPR-LGNCSRLKSFQAGYSNLLRSL-PDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL  185 (555)
Q Consensus       108 L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L  185 (555)
                      |+.|+++.|++....... -..+++|+.|.++.|.+.... ......+++|+.|++..|....+......-++.|++|||
T Consensus       174 Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL  253 (505)
T KOG3207|consen  174 LENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL  253 (505)
T ss_pred             chhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence            888888888776422111 225677888888877765321 223345678888888877533333444555677788888


Q ss_pred             ccCccccCCC-cCccCCCCCCeeeCccCcCccc-CCcc-----ccCCCCCCEEECcCccCccccC-cccccCCCCCcEEE
Q 040254          186 YSKELIGSIP-RDIGKLTNLKYLLLYRNNLSGS-LPSS-----MMNCTNLKTLNLMGNLFAGNLS-AYNFSVLSQLETID  257 (555)
Q Consensus       186 ~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~-~~~~-----l~~~~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~  257 (555)
                      ++|.+..... ...+.++.|+.|+++.+.+... .|+.     ...+++|+.|++..|++. ..+ ...+..+++|+.|.
T Consensus       254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence            8877764321 1345677777777777776632 1111     234566666666666654 111 11223344455555


Q ss_pred             cccccc
Q 040254          258 LYINMF  263 (555)
Q Consensus       258 l~~n~~  263 (555)
                      +..|.+
T Consensus       333 ~~~n~l  338 (505)
T KOG3207|consen  333 ITLNYL  338 (505)
T ss_pred             cccccc
Confidence            444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=3e-10  Score=98.33  Aligned_cols=124  Identities=23%  Similarity=0.236  Sum_probs=34.2

Q ss_pred             CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhh-hcC
Q 040254           75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDI-YAA  153 (555)
Q Consensus        75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l  153 (555)
                      ..++++|+|++|+|+.+.  .+..     .+.+|+.|++++|.++. + +.+..+++|++|++++|++... ...+ ..+
T Consensus        18 ~~~~~~L~L~~n~I~~Ie--~L~~-----~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~l   87 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE--NLGA-----TLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNL   87 (175)
T ss_dssp             --------------------S--T-----T-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-
T ss_pred             cccccccccccccccccc--chhh-----hhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhC
Confidence            444555666665555221  1110     12355666666666553 2 2355566666666665555433 2223 245


Q ss_pred             CCCCeeEeecccCcccc-cccccCCCCCcEEEcccCccccCCCc----CccCCCCCCeeeC
Q 040254          154 ASLEEPSLHFNKLSGFI-SNDIINLTSLLVLELYSKELIGSIPR----DIGKLTNLKYLLL  209 (555)
Q Consensus       154 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~L  209 (555)
                      ++|++|++++|+|.... ...+..+++|+.|++.+|++... +.    .+..+|+|+.||-
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            66666666666665432 23455666666666666666432 11    1334555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=1.4e-10  Score=104.66  Aligned_cols=129  Identities=31%  Similarity=0.356  Sum_probs=79.0

Q ss_pred             CCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccc--hhhhccccc
Q 040254          333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP--KELSRLQPL  410 (555)
Q Consensus       333 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L  410 (555)
                      ..+..|+++++++|.|+ .+..++.-.+.++.|++++|.+...  +.++.+++|+.|||++|.++....  ..+++.+  
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK--  355 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIK--  355 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEe--
Confidence            44567888888888887 4566667778888888888888733  237778888888888888763221  1111211  


Q ss_pred             hhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeec-chhhh
Q 040254          411 VIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSI-PNQIS  489 (555)
Q Consensus       411 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~  489 (555)
                                                           +|.|+.|.+..  -.++.++-+|..||+++|+|.... -..++
T Consensus       356 -------------------------------------tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG  396 (490)
T KOG1259|consen  356 -------------------------------------TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIG  396 (490)
T ss_pred             -------------------------------------eeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccc
Confidence                                                 34455554431  123455556666666666665221 12356


Q ss_pred             CCccCCeeeCCCCCCC
Q 040254          490 QLTILERLDLSKNHLS  505 (555)
Q Consensus       490 ~l~~L~~L~Ls~N~l~  505 (555)
                      ++|-|+.+.|.+|+|+
T Consensus       397 ~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  397 NLPCLETLRLTGNPLA  412 (490)
T ss_pred             cccHHHHHhhcCCCcc
Confidence            6666666666666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.6e-10  Score=109.61  Aligned_cols=189  Identities=22%  Similarity=0.217  Sum_probs=139.3

Q ss_pred             ccccCCCCCCEEEccCCcCcCcCc-hhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc-cC
Q 040254           45 PSIGNLTHISHLNLSHNHVHGPLP-INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-QV  122 (555)
Q Consensus        45 ~~~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~  122 (555)
                      .....|++++.|||++|-+...-+ ..+...+|+|+.|+++.|.+....-....     ..+++|+.|.++.|.++. .+
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-----~~l~~lK~L~l~~CGls~k~V  214 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-----LLLSHLKQLVLNSCGLSWKDV  214 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-----hhhhhhheEEeccCCCCHHHH
Confidence            467789999999999998774322 23566899999999999988732221111     145689999999999885 34


Q ss_pred             CccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccc-cccccCCCCCcEEEcccCccccC-CCcC---
Q 040254          123 PPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI-SNDIINLTSLLVLELYSKELIGS-IPRD---  197 (555)
Q Consensus       123 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~-~~~~---  197 (555)
                      ...+..+|.|+.|+|..|............+..|++|+|++|.+.... -.....++.|+.|.++.+.+... .|+.   
T Consensus       215 ~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~  294 (505)
T KOG3207|consen  215 QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL  294 (505)
T ss_pred             HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccch
Confidence            445678999999999998644443444556789999999999987643 24577899999999999988643 2322   


Q ss_pred             --ccCCCCCCeeeCccCcCcccCC--ccccCCCCCCEEECcCccCc
Q 040254          198 --IGKLTNLKYLLLYRNNLSGSLP--SSMMNCTNLKTLNLMGNLFA  239 (555)
Q Consensus       198 --l~~l~~L~~L~L~~n~l~~~~~--~~l~~~~~L~~L~l~~n~l~  239 (555)
                        ...+++|++|++..|++. ..+  ..+..+++|+.|.+..|.+.
T Consensus       295 ~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  295 DKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence              245789999999999985 222  23455677888888887775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.96  E-value=7.6e-11  Score=115.23  Aligned_cols=53  Identities=28%  Similarity=0.451  Sum_probs=32.5

Q ss_pred             EEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhC---CccCCeeeCCCC
Q 040254          448 TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQ---LTILERLDLSKN  502 (555)
Q Consensus       448 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---l~~L~~L~Ls~N  502 (555)
                      .||+|.|+++ .+|..|.+|+.|++|-|.+|.++ ..|..+..   ..=.++|+..-+
T Consensus       215 ~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  215 RLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            3677777776 56667777777777777777776 55554432   222445555555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=4.5e-10  Score=97.18  Aligned_cols=104  Identities=27%  Similarity=0.293  Sum_probs=20.2

Q ss_pred             CCCeeEeecccCccccccccc-CCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccc-cCCCCCCEEE
Q 040254          155 SLEEPSLHFNKLSGFISNDII-NLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM-MNCTNLKTLN  232 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~  232 (555)
                      .+++|++++|.|+.+  +.+. .+.+|+.|++++|.+...  +.+..+++|+.|++++|.++. +.+.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence            344444444444432  1222 234444444444444322  123344444444444444442 22222 2344444444


Q ss_pred             CcCccCccccCcccccCCCCCcEEEcccccc
Q 040254          233 LMGNLFAGNLSAYNFSVLSQLETIDLYINMF  263 (555)
Q Consensus       233 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~  263 (555)
                      +++|.+...-....+..+++|+.|++.+|.+
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            4444443211112233344444444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.94  E-value=7.5e-10  Score=119.75  Aligned_cols=85  Identities=25%  Similarity=0.262  Sum_probs=39.4

Q ss_pred             ccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCC
Q 040254          126 LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK  205 (555)
Q Consensus       126 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~  205 (555)
                      |..++.|++|||++|.-.+.+|..++++.+|++|+++++.++. .|..+..++.|.+|++..+.....++.....+++|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            4444444444444444444444444444445555554444443 344444444555555444433333333333445555


Q ss_pred             eeeCcc
Q 040254          206 YLLLYR  211 (555)
Q Consensus       206 ~L~L~~  211 (555)
                      +|.+..
T Consensus       646 ~L~l~~  651 (889)
T KOG4658|consen  646 VLRLPR  651 (889)
T ss_pred             EEEeec
Confidence            554443

>PLN03150 hypothetical protein; Provisional

Probab=98.91  E-value=2.6e-09  Score=113.14  Aligned_cols=109  Identities=28%  Similarity=0.431  Sum_probs=93.7

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccc
Q 040254          361 KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYN  440 (555)
Q Consensus       361 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  440 (555)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..++.|.                             
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~-----------------------------  469 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE-----------------------------  469 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC-----------------------------
Confidence            377889999999888888888999999999999999888888888888777                             


Q ss_pred             cccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCC-ccCCeeeCCCCCCC
Q 040254          441 RIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQL-TILERLDLSKNHLS  505 (555)
Q Consensus       441 ~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~Ls~N~l~  505 (555)
                             .|+|++|++++.+|..+.++++|+.|+|++|.+++.+|..+... .++..+++++|...
T Consensus       470 -------~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        470 -------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             -------EEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence                   58999999998999999999999999999999999999888763 46778888888753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.90  E-value=5.9e-11  Score=115.99  Aligned_cols=128  Identities=32%  Similarity=0.480  Sum_probs=88.4

Q ss_pred             CCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhh
Q 040254          335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQ  414 (555)
Q Consensus       335 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~  414 (555)
                      +..|.+++++.|.+. ..|..++.|+ |+.|.+++|+++ .+|..++..+.|..||.+.|.+. .+|..+.++..|+.  
T Consensus       120 L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~--  193 (722)
T KOG0532|consen  120 LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD--  193 (722)
T ss_pred             hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH--
Confidence            445666777777766 5566666653 777777777777 66666677777777777777776 55556666666553  


Q ss_pred             ccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccC
Q 040254          415 NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTIL  494 (555)
Q Consensus       415 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  494 (555)
                                                        +.+..|.+. .+|..+..+ .|..||+|+|+++ .+|-.|.++..|
T Consensus       194 ----------------------------------l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~L  236 (722)
T KOG0532|consen  194 ----------------------------------LNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHL  236 (722)
T ss_pred             ----------------------------------HHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhh
Confidence                                              445555555 455555533 3777888888887 788888888888


Q ss_pred             CeeeCCCCCCC
Q 040254          495 ERLDLSKNHLS  505 (555)
Q Consensus       495 ~~L~Ls~N~l~  505 (555)
                      ++|-|.+|++.
T Consensus       237 q~l~LenNPLq  247 (722)
T KOG0532|consen  237 QVLQLENNPLQ  247 (722)
T ss_pred             eeeeeccCCCC
Confidence            88888888887

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.89  E-value=2.2e-09  Score=116.18  Aligned_cols=234  Identities=24%  Similarity=0.263  Sum_probs=142.8

Q ss_pred             CCCCCCEEEccCCc--CcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254           49 NLTHISHLNLSHNH--VHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL  126 (555)
Q Consensus        49 ~l~~L~~L~L~~n~--~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  126 (555)
                      .+++|++|-+..|.  +. .++..+|..++.|++|||++|.=-+..|..+..+.      +||||+++++.+. .+|..+
T Consensus       543 ~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li------~LryL~L~~t~I~-~LP~~l  614 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV------HLRYLDLSDTGIS-HLPSGL  614 (889)
T ss_pred             CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh------hhhcccccCCCcc-ccchHH
Confidence            34578999998886  55 78888899999999999998765556777777666      8999999999988 589999


Q ss_pred             cCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCc--ccccccccCCCCCcEEEcccCccccCCCcCccCCCCC
Q 040254          127 GNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS--GFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNL  204 (555)
Q Consensus       127 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  204 (555)
                      +++..|.+|++..+.....++.....+.+|++|.+......  ......+..+.+|+.+.......  .+-..+..+++|
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L  692 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRL  692 (889)
T ss_pred             HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHH
Confidence            99999999999887766666777777899999988766522  12223344555555555533222  111112233333


Q ss_pred             C----eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccC------CCCCcEEEcccccccccccccccCC
Q 040254          205 K----YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSV------LSQLETIDLYINMFTGSFLLTLTSC  274 (555)
Q Consensus       205 ~----~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~------l~~L~~L~l~~n~~~~~~~~~l~~~  274 (555)
                      .    .+.+..+... ..+..+..+.+|+.|.+.++.+.. ........      ++++..+...++..-. .+.+.-..
T Consensus       693 ~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~  769 (889)
T KOG4658|consen  693 RSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE-IVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFA  769 (889)
T ss_pred             HHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch-hhcccccccchhhhHHHHHHHHhhcccccc-ccchhhcc
Confidence            3    3333232322 344456777888888888776642 11111111      1222222222222111 12222345


Q ss_pred             CCCcEEEcccceecccCChhh
Q 040254          275 RLLTALRLACNQLEGQIPPEI  295 (555)
Q Consensus       275 ~~L~~L~l~~n~~~~~~~~~l  295 (555)
                      ++|+.|.+..+...+.+.+..
T Consensus       770 ~~L~~l~l~~~~~~e~~i~~~  790 (889)
T KOG4658|consen  770 PHLTSLSLVSCRLLEDIIPKL  790 (889)
T ss_pred             CcccEEEEecccccccCCCHH
Confidence            788888888776654444433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.87  E-value=4.3e-09  Score=106.46  Aligned_cols=176  Identities=31%  Similarity=0.415  Sum_probs=89.6

Q ss_pred             CccEEEccCCcCCccCCccccCCC-CCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCS-RLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL  185 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L  185 (555)
                      .+..|++.+|.++. ++....... +|+.|++++|.+. .+|..+..++.|+.|+++.|+++.+ +......++|+.|++
T Consensus       117 ~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheec
Confidence            45555555555552 333344342 5555555544432 2333455555555555555555543 222224555555666


Q ss_pred             ccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254          186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       186 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      ++|.+. .+|........|+.+.+++|... ..+..+..+.++..+.+.+|++. .++ ..+..+.+++.|++++|.+..
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~-~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP-ESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc-chhccccccceeccccccccc
Confidence            555554 33332233344666666666432 23344555555566655555544 111 234555566666666666654


Q ss_pred             cccccccCCCCCcEEEcccceecccC
Q 040254          266 SFLLTLTSCRLLTALRLACNQLEGQI  291 (555)
Q Consensus       266 ~~~~~l~~~~~L~~L~l~~n~~~~~~  291 (555)
                      ...  +....+++.++++++.+....
T Consensus       270 i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         270 ISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ccc--ccccCccCEEeccCccccccc
Confidence            333  556666666666666665433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=4.4e-10  Score=101.44  Aligned_cols=133  Identities=25%  Similarity=0.229  Sum_probs=99.2

Q ss_pred             hhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCC
Q 040254          150 IYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK  229 (555)
Q Consensus       150 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~  229 (555)
                      +..+..|+++|+++|.|+.+ .+...-.+.++.|+++.|.+...  +.+..+++|+.|||++|.++ .+..+-..+.+++
T Consensus       280 ~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            44456778888888888763 44566678888888888888643  33777888888899888887 4555666677888


Q ss_pred             EEECcCccCccccCcccccCCCCCcEEEccccccccc-ccccccCCCCCcEEEcccceecc
Q 040254          230 TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS-FLLTLTSCRLLTALRLACNQLEG  289 (555)
Q Consensus       230 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~  289 (555)
                      +|.+++|.+. .+.  .+..+-+|..|++++|++... ....++.+|.|+.+.+.+|.+.+
T Consensus       356 tL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            8999888776 333  466677888889988888754 34567788999999999988874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.82  E-value=4.8e-09  Score=106.10  Aligned_cols=147  Identities=34%  Similarity=0.449  Sum_probs=92.6

Q ss_pred             CccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccch---hhhccccchhh
Q 040254          337 NLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPK---ELSRLQPLVIE  413 (555)
Q Consensus       337 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~~  413 (555)
                      +|+.|++++|.+. .++..+..++.|+.|++++|++. .++......+.|+.|++++|++. .+|.   ....++.+.+.
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            5666667666665 44455666677777777777766 33333335666777777777766 3333   23336666666


Q ss_pred             hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCcc
Q 040254          414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTI  493 (555)
Q Consensus       414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  493 (555)
                      +|........+.                .......+.+.+|++. ..+..+..+++++.|++++|.++...+  ++.+.+
T Consensus       218 ~N~~~~~~~~~~----------------~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~  278 (394)
T COG4886         218 NNSIIELLSSLS----------------NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTN  278 (394)
T ss_pred             CCcceecchhhh----------------hcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCc
Confidence            653211111000                0001113557777776 336778888899999999999994444  888999


Q ss_pred             CCeeeCCCCCCC
Q 040254          494 LERLDLSKNHLS  505 (555)
Q Consensus       494 L~~L~Ls~N~l~  505 (555)
                      ++.|++++|.++
T Consensus       279 l~~L~~s~n~~~  290 (394)
T COG4886         279 LRELDLSGNSLS  290 (394)
T ss_pred             cCEEeccCcccc
Confidence            999999999987

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=3.7e-09  Score=75.06  Aligned_cols=61  Identities=43%  Similarity=0.570  Sum_probs=54.3

Q ss_pred             CCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccC
Q 040254          336 QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNI  396 (555)
Q Consensus       336 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  396 (555)
                      |+|++|++++|+++...+.+|..+++|++|++++|++....+++|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999877778899999999999999999988888999999999999999975

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=5.4e-09  Score=74.24  Aligned_cols=61  Identities=33%  Similarity=0.509  Sum_probs=41.1

Q ss_pred             CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcC
Q 040254           51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDF  118 (555)
Q Consensus        51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l  118 (555)
                      |+|++|++++|.+. .+|..+|.++++|++|++++|+++...++.|..      +++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~------l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN------LPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTT------STTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcC------CCCCCEEeCcCCcC
Confidence            46677777777776 677777777777777777777777665555543      33666666666653

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.61  E-value=8.4e-10  Score=110.96  Aligned_cols=127  Identities=24%  Similarity=0.259  Sum_probs=95.5

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      .|...++++|.+. .+-.++.-++.++.|+|++|++...  ..+..++.|++|||++|.+..+..-...+++ |+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            5778888888887 3556677788899999999887765  3678889999999999988876544455555 8999999


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccC-CccccCCCCCCEEECcCccCc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSL-PSSMMNCTNLKTLNLMGNLFA  239 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~  239 (555)
                      +|.++..  ..+.++.+|+.||+++|-+.+.. -..+..+..|+.|++.+|++.
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8887643  24677889999999998876321 122445567888999998875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.61  E-value=1.1e-08  Score=103.59  Aligned_cols=79  Identities=20%  Similarity=0.303  Sum_probs=35.5

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccccc-ccccCCCCCcEEEc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFIS-NDIINLTSLLVLEL  185 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L  185 (555)
                      +|++|++++|.|+..  ..+..++.|+.|++.+|.+...  ..+..++.|+.+++++|.+..+.. . ...+.+++.+++
T Consensus       119 ~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l  193 (414)
T KOG0531|consen  119 NLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDL  193 (414)
T ss_pred             cchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhc
Confidence            555555555555421  1233344455555554444322  223334455555555555544322 1 344455555555


Q ss_pred             ccCcc
Q 040254          186 YSKEL  190 (555)
Q Consensus       186 ~~n~~  190 (555)
                      .+|.+
T Consensus       194 ~~n~i  198 (414)
T KOG0531|consen  194 GGNSI  198 (414)
T ss_pred             cCCch
Confidence            55544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.60  E-value=5.3e-09  Score=105.93  Aligned_cols=129  Identities=29%  Similarity=0.254  Sum_probs=69.4

Q ss_pred             CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCC--CcEEEccCccCccccchhhhccccch
Q 040254          334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPS--LFYFALSQNNISGEFPKELSRLQPLV  411 (555)
Q Consensus       334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~  411 (555)
                      .+.+++.+.+.+|.+..  ..++..+..+..+++..|++...-+  +..+..  |+.+++++|++.. .+..+..+..+.
T Consensus       184 ~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~  258 (414)
T KOG0531|consen  184 ELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLP  258 (414)
T ss_pred             hccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-cccccccccccc
Confidence            34566667777776652  2333444455555677776663221  222232  6777777777662 211222222221


Q ss_pred             hhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceee---cchh-
Q 040254          412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGS---IPNQ-  487 (555)
Q Consensus       412 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-  487 (555)
                                                          .+++.+|++...  ..+...+.+.++....|.+...   .... 
T Consensus       259 ------------------------------------~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (414)
T KOG0531|consen  259 ------------------------------------VLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYI  300 (414)
T ss_pred             ------------------------------------ccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccc
Confidence                                                355666665532  2244556677777777776521   2221 


Q ss_pred             hhCCccCCeeeCCCCCCC
Q 040254          488 ISQLTILERLDLSKNHLS  505 (555)
Q Consensus       488 l~~l~~L~~L~Ls~N~l~  505 (555)
                      ....+.++.+.+.+|.+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  301 TSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             ccccccccccccccCccc
Confidence            456778888888888876

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.2e-09  Score=98.66  Aligned_cols=181  Identities=13%  Similarity=0.057  Sum_probs=96.3

Q ss_pred             CCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc--HhhhcCC
Q 040254           77 LLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP--DDIYAAA  154 (555)
Q Consensus        77 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~~l~  154 (555)
                      .|++||||...|+...-.     .....+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+.-.....  --+..++
T Consensus       186 Rlq~lDLS~s~it~stl~-----~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLH-----GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS  260 (419)
T ss_pred             hhHHhhcchhheeHHHHH-----HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence            466777776665522100     001134567777777777666555556666777777776654332221  2245667


Q ss_pred             CCCeeEeecccCccccccc-ccC-CCCCcEEEcccCcccc---CCCcCccCCCCCCeeeCccCc-CcccCCccccCCCCC
Q 040254          155 SLEEPSLHFNKLSGFISND-IIN-LTSLLVLELYSKELIG---SIPRDIGKLTNLKYLLLYRNN-LSGSLPSSMMNCTNL  228 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~-~~~-l~~L~~L~L~~n~~~~---~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~~~~L  228 (555)
                      .|.+|+++++.+....... +.+ -++|+.|+++|+.-.-   .+......+++|.+|||+.|. ++......+.+++.|
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            7777777777654321111 111 1456677776654321   111112456777777777664 333333456667777


Q ss_pred             CEEECcCccCccccCcccccCCCCCcEEEccccc
Q 040254          229 KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM  262 (555)
Q Consensus       229 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  262 (555)
                      ++|.++.|.....-....+...+.|.+|++.++-
T Consensus       341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            7777777653211111234556666777665553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=3.1e-08  Score=100.00  Aligned_cols=59  Identities=31%  Similarity=0.248  Sum_probs=46.7

Q ss_pred             CCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc
Q 040254          336 QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS  397 (555)
Q Consensus       336 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  397 (555)
                      -.|...+++.|.+. .+..++.-++.++.|+|++|+++...  .+..++.|++|||+.|.+.
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~  222 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR  222 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc
Confidence            45777788888887 56777788888888888888887443  6778888888888888876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=1.6e-07  Score=84.01  Aligned_cols=209  Identities=21%  Similarity=0.161  Sum_probs=105.4

Q ss_pred             cccCCCCCcEEEcccCccccCCCc----CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCccccc
Q 040254          173 DIINLTSLLVLELYSKELIGSIPR----DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFS  248 (555)
Q Consensus       173 ~~~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  248 (555)
                      ++..|+.|+..+++.|.+....|.    .++.-+.|.+|.+++|.+...-..-++.  .|.+  +..|        ....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n--------KKaa  154 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN--------KKAA  154 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH--------hhhc
Confidence            344556666666666655444333    2344566666666666654111000100  0000  0000        0011


Q ss_pred             CCCCCcEEEccccccccc----ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCC
Q 040254          249 VLSQLETIDLYINMFTGS----FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATP  324 (555)
Q Consensus       249 ~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~  324 (555)
                      .-+.|+.+....|.+..-    ....+.....|+.+.+..|.|.   |..+..+.-+.+..|.+|+.|++.+|.++....
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS  231 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS  231 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence            224455555544444321    1222334456777777777655   333333333345556677777777777766555


Q ss_pred             ccccccccCCCCCccEEEccCcccccccchhh------hCCCCCcEEEccCCccccccCcc-------ccCCCCCcEEEc
Q 040254          325 NYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL------SKLTKLEVLLLSGNQITGSIPGW-------FGNLPSLFYFAL  391 (555)
Q Consensus       325 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l------~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L  391 (555)
                      .+....+ ..++.|+.|.+..|-++......+      ...++|..|-..+|.+.+.+...       -..+|-|..|.+
T Consensus       232 ~~La~al-~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~  310 (388)
T COG5238         232 RYLADAL-CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLER  310 (388)
T ss_pred             HHHHHHh-cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHH
Confidence            4443333 445667888888886654332221      12467777777777655322111       134666777777


Q ss_pred             cCccCc
Q 040254          392 SQNNIS  397 (555)
Q Consensus       392 ~~n~l~  397 (555)
                      .+|.+.
T Consensus       311 ngNr~~  316 (388)
T COG5238         311 NGNRIK  316 (388)
T ss_pred             ccCcch
Confidence            777775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=5.1e-08  Score=88.31  Aligned_cols=182  Identities=23%  Similarity=0.220  Sum_probs=94.1

Q ss_pred             CCCeeeCccCcCcc-cCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccc-cccc-ccccccCCCCCcE
Q 040254          203 NLKYLLLYRNNLSG-SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM-FTGS-FLLTLTSCRLLTA  279 (555)
Q Consensus       203 ~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~l~~~~~L~~  279 (555)
                      .||++||+...++. .+-..+++|.+|+.|.+.++++.+.+. ..+..-.+|+.|+++.+. ++.. ..-.+..|..|.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            46666666655541 122334556666666666666554333 334445566666665432 2221 1123445666666


Q ss_pred             EEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcc-cccccchhhhC
Q 040254          280 LRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQ-LTGQVPLWLSK  358 (555)
Q Consensus       280 L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~  358 (555)
                      |+++.+....+...      ...-.--+.|+.|++++.+-.-....  .......+|+|..||+++|. ++......|.+
T Consensus       265 LNlsWc~l~~~~Vt------v~V~hise~l~~LNlsG~rrnl~~sh--~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVT------VAVAHISETLTQLNLSGYRRNLQKSH--LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             cCchHhhccchhhh------HHHhhhchhhhhhhhhhhHhhhhhhH--HHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence            66666644322111      00111123455555554322111110  11222456777788887763 34344556677


Q ss_pred             CCCCcEEEccCCccccccCcc---ccCCCCCcEEEccCcc
Q 040254          359 LTKLEVLLLSGNQITGSIPGW---FGNLPSLFYFALSQNN  395 (555)
Q Consensus       359 l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~  395 (555)
                      ++.|++|.++.|-.  ++|..   +...|+|.+|++.++-
T Consensus       337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            78888888887753  34443   4567888888888753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.11  E-value=2.2e-06  Score=55.51  Aligned_cols=37  Identities=46%  Similarity=0.659  Sum_probs=30.2

Q ss_pred             CCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          468 KFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       468 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      ++|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46899999999999 56667899999999999999987

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.08  E-value=5.3e-07  Score=72.29  Aligned_cols=72  Identities=22%  Similarity=0.304  Sum_probs=33.0

Q ss_pred             ccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccch
Q 040254          338 LRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLV  411 (555)
Q Consensus       338 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  411 (555)
                      |+..++++|.+....+..-..++.++.+++++|++. .+|..+..++.|+.|+++.|++. ..|+.+..|..++
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            344444444444222222233344555555555555 34444555555555555555554 3333333344443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.05  E-value=8.5e-07  Score=79.50  Aligned_cols=203  Identities=22%  Similarity=0.248  Sum_probs=105.7

Q ss_pred             CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCC---ccC-------CccccCCCCCcEEEccCCCCCC
Q 040254           75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFS---SQV-------PPRLGNCSRLKSFQAGYSNLLR  144 (555)
Q Consensus        75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~---~~~-------~~~~~~l~~L~~L~L~~~~~~~  144 (555)
                      +..+..++||+|-|.......+...+.  +-.+|+..+++.-...   ..+       ..++.+||+|+..+|+.|.+..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia--~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIA--NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHh--hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            677888888888777554444444332  3456777777654221   122       2334567777777777776655


Q ss_pred             CCcHh----hhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccC--
Q 040254          145 SLPDD----IYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSL--  218 (555)
Q Consensus       145 ~~~~~----~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--  218 (555)
                      ..|..    ++..+.|.+|.+++|.+..+.-..++.  .|.+|  ..|+       -...-|.|+.+....|++..-.  
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~nK-------Kaa~kp~Le~vicgrNRlengs~~  175 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYNK-------KAADKPKLEVVICGRNRLENGSKE  175 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHHh-------hhccCCCceEEEeccchhccCcHH
Confidence            55543    334466666666666554322111110  00000  0111       1123356677777666664221  


Q ss_pred             --CccccCCCCCCEEECcCccCccc----cCcccccCCCCCcEEEccccccccc----ccccccCCCCCcEEEcccceec
Q 040254          219 --PSSMMNCTNLKTLNLMGNLFAGN----LSAYNFSVLSQLETIDLYINMFTGS----FLLTLTSCRLLTALRLACNQLE  288 (555)
Q Consensus       219 --~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~  288 (555)
                        ...+..-..|+++.+.+|.|...    +....+..+++|+.|++.+|.++-.    ...++..++.|++|.+..|-++
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence              11233334677777777765421    1112233456777777777766532    2344555666777777666555


Q ss_pred             cc
Q 040254          289 GQ  290 (555)
Q Consensus       289 ~~  290 (555)
                      ..
T Consensus       256 ~~  257 (388)
T COG5238         256 NE  257 (388)
T ss_pred             cc
Confidence            33

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=1.6e-06  Score=78.86  Aligned_cols=58  Identities=17%  Similarity=0.265  Sum_probs=28.5

Q ss_pred             CCCCCccEEEccCccccc-ccchhhhCCCCCcEEEccCCccccccCc------cccCCCCCcEEE
Q 040254          333 DGFQNLRAVSLAGCQLTG-QVPLWLSKLTKLEVLLLSGNQITGSIPG------WFGNLPSLFYFA  390 (555)
Q Consensus       333 ~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~  390 (555)
                      ..+|.+..|.++.+++.. ..-..+..+++|+.|.++++.+.+.+..      .++++++++.|+
T Consensus       221 e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  221 EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            344555555666555541 1123345556666666666665543322      134455555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=2.6e-06  Score=77.48  Aligned_cols=15  Identities=33%  Similarity=0.363  Sum_probs=8.1

Q ss_pred             CCCCCEEEccCCcCc
Q 040254           75 LTLLEIIDLSYNSLS   89 (555)
Q Consensus        75 l~~L~~L~Ls~n~i~   89 (555)
                      +..++.+||.+|.|+
T Consensus        70 ~~~v~elDL~~N~iS   84 (418)
T KOG2982|consen   70 VTDVKELDLTGNLIS   84 (418)
T ss_pred             hhhhhhhhcccchhc
Confidence            445555555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.84  E-value=9.5e-06  Score=86.11  Aligned_cols=183  Identities=17%  Similarity=0.151  Sum_probs=103.3

Q ss_pred             ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcC-------cCc-----hhHH--hcCCCCCEEEccCCcCc-c
Q 040254           26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHG-------PLP-----INSF--HFLTLLEIIDLSYNSLS-G   90 (555)
Q Consensus        26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~-------~i~-----~~~~--~~l~~L~~L~Ls~n~i~-~   90 (555)
                      .+.++..++.+..........+.+.. |+++.|.+-....       .+.     ...+  ..-.+|++||+++...- .
T Consensus        59 ~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~  137 (699)
T KOG3665|consen   59 KFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN  137 (699)
T ss_pred             hheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence            34555666665555555554454444 6666665532111       011     1111  01256788888775422 1


Q ss_pred             ccCCCCccccccCCCCCccEEEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccc
Q 040254           91 ELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF  169 (555)
Q Consensus        91 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~  169 (555)
                      ..+..+..     .+|+|+.|.+++-.+.. .......++++|..||++++++...  .+++.+++|+.|.+.+-.+...
T Consensus       138 ~W~~kig~-----~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~  210 (699)
T KOG3665|consen  138 GWPKKIGT-----MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESY  210 (699)
T ss_pred             cHHHHHhh-----hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCch
Confidence            11111111     46678888877765543 2334456778888888887766544  5677788888888777666542


Q ss_pred             -ccccccCCCCCcEEEcccCccccCC--C----cCccCCCCCCeeeCccCcCcc
Q 040254          170 -ISNDIINLTSLLVLELYSKELIGSI--P----RDIGKLTNLKYLLLYRNNLSG  216 (555)
Q Consensus       170 -~~~~~~~l~~L~~L~L~~n~~~~~~--~----~~l~~l~~L~~L~L~~n~l~~  216 (555)
                       .-..+.++++|+.||++........  .    +.-..+|+|+.||.++..+..
T Consensus       211 ~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  211 QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence             2235667888888888765543221  1    112246788888888777653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=2.8e-05  Score=50.39  Aligned_cols=36  Identities=53%  Similarity=0.609  Sum_probs=22.2

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCccCc
Q 040254          361 KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS  397 (555)
Q Consensus       361 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  397 (555)
                      +|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666777777666 34445666777777777777666

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.65  E-value=0.00041  Score=68.03  Aligned_cols=32  Identities=25%  Similarity=0.255  Sum_probs=13.8

Q ss_pred             CCCCeeeCccCcCcccCCccccCCCCCCEEECcCc
Q 040254          202 TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGN  236 (555)
Q Consensus       202 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n  236 (555)
                      ++|++|++++|... ..|..+.  .+|+.|.++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            34555555554433 2222222  34555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.62  E-value=0.00012  Score=63.25  Aligned_cols=103  Identities=18%  Similarity=0.151  Sum_probs=53.5

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccc-cccccCCCCCcEEEc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI-SNDIINLTSLLVLEL  185 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L  185 (555)
                      +...+||++|.+.  ....|..+++|..|.+.+|+++...|.--.-++.|+.|.+.+|+|..+. ...+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4556666666654  2233555666666666666655555543334455666666666665432 133455556666666


Q ss_pred             ccCccccCC---CcCccCCCCCCeeeCcc
Q 040254          186 YSKELIGSI---PRDIGKLTNLKYLLLYR  211 (555)
Q Consensus       186 ~~n~~~~~~---~~~l~~l~~L~~L~L~~  211 (555)
                      -+|+....-   .-.+..+++|+.||...
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            555543211   01233455555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.61  E-value=6.1e-06  Score=66.33  Aligned_cols=105  Identities=30%  Similarity=0.372  Sum_probs=76.1

Q ss_pred             CCcEEEccCCccccccCc---cccCCCCCcEEEccCccCccccchhhhccc-cchhhhccCCCCCCCCCccccCCCcccc
Q 040254          361 KLEVLLLSGNQITGSIPG---WFGNLPSLFYFALSQNNISGEFPKELSRLQ-PLVIEQNKFNRNKPDLPFFLFPNQNSTS  436 (555)
Q Consensus       361 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~~~~~~~~~~~~l~~~~~~~~~~~~  436 (555)
                      .+..++|++|++. .+++   .+.....|+..+|++|.+. .+|+.|...- ...                         
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t-------------------------   80 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTAT-------------------------   80 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhh-------------------------
Confidence            4566777777765 2222   3444556777788888876 4555443321 121                         


Q ss_pred             cccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          437 HQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       437 ~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                                 ++++++|.++ .+|.++..++.|+.|++++|.+. ..|..+..+.++-.||.-+|.+.
T Consensus        81 -----------~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   81 -----------TLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             -----------hhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence                       4778888888 78888999999999999999998 77888888999999999999885

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.60  E-value=0.00014  Score=60.54  Aligned_cols=84  Identities=18%  Similarity=0.280  Sum_probs=36.9

Q ss_pred             ccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCc
Q 040254           45 PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPP  124 (555)
Q Consensus        45 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  124 (555)
                      .+|..+++|+.+.+.. .+. .++..+|.++++|+.+.+..+ +.......|.      .+.+|+.+.+.+ .+......
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~------~~~~l~~i~~~~-~~~~i~~~   75 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFS------NCKSLESITFPN-NLKSIGDN   75 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTT------T-TT-EEEEETS-TT-EE-TT
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeee------cccccccccccc-cccccccc
Confidence            3566666777777664 344 566666776666776666653 4433322332      222455555544 33322333


Q ss_pred             cccCCCCCcEEEcc
Q 040254          125 RLGNCSRLKSFQAG  138 (555)
Q Consensus       125 ~~~~l~~L~~L~L~  138 (555)
                      +|..+++|+.+++.
T Consensus        76 ~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   76 AFSNCTNLKNIDIP   89 (129)
T ss_dssp             TTTT-TTECEEEET
T ss_pred             cccccccccccccC
Confidence            44555555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.60  E-value=0.00014  Score=60.46  Aligned_cols=127  Identities=18%  Similarity=0.191  Sum_probs=57.2

Q ss_pred             cCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCC
Q 040254           66 PLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRS  145 (555)
Q Consensus        66 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  145 (555)
                      .++..+|.++++|+.+.+.. .+.......|.      .+.+|+.+.+.++ +......+|.+++.++.+.+.. .....
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~------~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i   72 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFS------NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSI   72 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTT------T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhcc------ccccccccccccc-ccccceeeeecccccccccccc-ccccc
Confidence            45677788888888888874 45544444443      2336777777764 5544555677776777777753 33322


Q ss_pred             CcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCC
Q 040254          146 LPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNL  204 (555)
Q Consensus       146 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  204 (555)
                      -...|..+++++.+.+..+ +..+....|.++ +++.+.+.. .+.......|.++++|
T Consensus        73 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   73 GDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            2334555666777766554 444455556665 666666543 2223333344444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.54  E-value=0.00014  Score=62.74  Aligned_cols=105  Identities=15%  Similarity=0.155  Sum_probs=72.5

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc-CCccccCCC
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ-VPPRLGNCS  130 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~  130 (555)
                      +...+||++|.+. .++.  |.+++.|..|.+.+|+|+.+.|..-+      .+++|..|.+.+|.+... .-.-+..|+
T Consensus        43 ~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~------~~p~l~~L~LtnNsi~~l~dl~pLa~~p  113 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDT------FLPNLKTLILTNNSIQELGDLDPLASCP  113 (233)
T ss_pred             ccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhh------hccccceEEecCcchhhhhhcchhccCC
Confidence            4567888888776 5554  77788888888888888876664433      234788888888887741 123367788


Q ss_pred             CCcEEEccCCCCCCCCc---HhhhcCCCCCeeEeeccc
Q 040254          131 RLKSFQAGYSNLLRSLP---DDIYAAASLEEPSLHFNK  165 (555)
Q Consensus       131 ~L~~L~L~~~~~~~~~~---~~~~~l~~L~~L~l~~n~  165 (555)
                      +|++|.+-+|.....--   ..+.++++|+.||+..-.
T Consensus       114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            88888888776543311   235677888888887644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.47  E-value=3.4e-05  Score=82.01  Aligned_cols=207  Identities=16%  Similarity=0.127  Sum_probs=117.2

Q ss_pred             ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccC---------CCCccccccCCCCCccEEEccCCc
Q 040254           47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELT---------GLIPSLAWNHSFCSMRLLDFSYND  117 (555)
Q Consensus        47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~---------~~~~~~~~~~~~~~L~~L~ls~n~  117 (555)
                      +...-++...++.+.... ........... |++|.+.+-.......         ..+........-.+|++|++++..
T Consensus        56 ~~~~f~ltki~l~~~~~~-~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~  133 (699)
T KOG3665|consen   56 IIRKFNLTKIDLKNVTLQ-HQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSE  133 (699)
T ss_pred             hhhhheeEEeeccceecc-hhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccc
Confidence            334446667777766655 44444455344 7777777532111100         111222211133468888888764


Q ss_pred             CCc-cCC-ccccCCCCCcEEEccCCCCCCC-CcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc-C
Q 040254          118 FSS-QVP-PRLGNCSRLKSFQAGYSNLLRS-LPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG-S  193 (555)
Q Consensus       118 l~~-~~~-~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-~  193 (555)
                      .-. .-+ ..-..+|.|++|.+++-.+... +.....++++|..||++++.++.+  ..++.+++|+.|.+.+=.+.. .
T Consensus       134 ~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~  211 (699)
T KOG3665|consen  134 LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQ  211 (699)
T ss_pred             hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchh
Confidence            421 111 1123578888888886444322 223345678888888888888765  667888888888886655432 1


Q ss_pred             CCcCccCCCCCCeeeCccCcCcccC------CccccCCCCCCEEECcCccCccccCcccccCCCCCcEEE
Q 040254          194 IPRDIGKLTNLKYLLLYRNNLSGSL------PSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID  257 (555)
Q Consensus       194 ~~~~l~~l~~L~~L~L~~n~l~~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  257 (555)
                      .-..+-.+++|++||+|........      -+.-..+|.|+.|+.++..+...+.......-++|+.+.
T Consensus       212 ~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  212 DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            1123456888888888876544211      122344778888888887766444333333334444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.46  E-value=0.00046  Score=67.70  Aligned_cols=137  Identities=20%  Similarity=0.269  Sum_probs=87.7

Q ss_pred             cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC-cCCccCCc
Q 040254           46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN-DFSSQVPP  124 (555)
Q Consensus        46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~  124 (555)
                      -+..+.++++|++++|.+. .+|.  +  -++|++|.++++.--...|+.+|.        +|++|++++| .+. .+|.
T Consensus        47 r~~~~~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP~--------nLe~L~Ls~Cs~L~-sLP~  112 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSIPE--------GLEKLTVCHCPEIS-GLPE  112 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchhhh--------hhhheEccCccccc-cccc
Confidence            3556789999999999887 7772  2  246999999985433345555543        8999999998 554 3443


Q ss_pred             cccCCCCCcEEEccCCCC--CCCCcHhhhcCCCCCeeEeecccCccccccccc-CC-CCCcEEEcccCccccCCCcCccC
Q 040254          125 RLGNCSRLKSFQAGYSNL--LRSLPDDIYAAASLEEPSLHFNKLSGFISNDII-NL-TSLLVLELYSKELIGSIPRDIGK  200 (555)
Q Consensus       125 ~~~~l~~L~~L~L~~~~~--~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~l-~~L~~L~L~~n~~~~~~~~~l~~  200 (555)
                            .|+.|++..+..  ...+|.      .|+.|.+.+++-..  ...+. .+ ++|++|++++|... ..|..+. 
T Consensus       113 ------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP-  176 (426)
T PRK15386        113 ------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNI-ILPEKLP-  176 (426)
T ss_pred             ------ccceEEeCCCCCcccccCcc------hHhheecccccccc--ccccccccCCcccEEEecCCCcc-cCccccc-
Confidence                  477777765443  333444      45677764432110  01111 12 58999999988865 3454444 


Q ss_pred             CCCCCeeeCccCc
Q 040254          201 LTNLKYLLLYRNN  213 (555)
Q Consensus       201 l~~L~~L~L~~n~  213 (555)
                       .+|+.|+++.+.
T Consensus       177 -~SLk~L~ls~n~  188 (426)
T PRK15386        177 -ESLQSITLHIEQ  188 (426)
T ss_pred             -ccCcEEEecccc
Confidence             689999998764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.42  E-value=4.7e-06  Score=79.44  Aligned_cols=64  Identities=22%  Similarity=0.218  Sum_probs=34.5

Q ss_pred             CCCCCccEEEccCcccc-cc----cchhhhCCCCCcEEEccCCccc-cccCccccCCCCCcEEEccCccC
Q 040254          333 DGFQNLRAVSLAGCQLT-GQ----VPLWLSKLTKLEVLLLSGNQIT-GSIPGWFGNLPSLFYFALSQNNI  396 (555)
Q Consensus       333 ~~~~~L~~L~l~~n~i~-~~----~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l  396 (555)
                      ..++.|+.+.+++|... +.    ....-.....+..+.|++++.. +..-+.+..+++|+.+++-+++-
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            34455566666555332 11    1122234556777777777543 23334556677777777777653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.69  E-value=0.00066  Score=61.34  Aligned_cols=113  Identities=18%  Similarity=0.077  Sum_probs=68.1

Q ss_pred             CCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc-c
Q 040254           43 HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-Q  121 (555)
Q Consensus        43 ~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~  121 (555)
                      +......+..|+.|++.+..++ .+..  |..+++|+.|.+|.|.+...  ..+..++.  .+++|++|+++.|++.. .
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~--~~l~vl~e--~~P~l~~l~ls~Nki~~ls  107 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVS--GGLEVLAE--KAPNLKVLNLSGNKIKDLS  107 (260)
T ss_pred             cccccccccchhhhhhhcccee-eccc--CCCcchhhhhcccCCccccc--ccceehhh--hCCceeEEeecCCcccccc
Confidence            5555666777777777777665 3332  66688888888888833311  12222222  34688888888888873 1


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCC---cHhhhcCCCCCeeEee
Q 040254          122 VPPRLGNCSRLKSFQAGYSNLLRSL---PDDIYAAASLEEPSLH  162 (555)
Q Consensus       122 ~~~~~~~l~~L~~L~L~~~~~~~~~---~~~~~~l~~L~~L~l~  162 (555)
                      -...+..+.+|..|++.+|..+...   ...|.-+++|+.|+-.
T Consensus       108 tl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  108 TLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             ccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            1122456777888888877655422   1234455777766643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.00012  Score=66.38  Aligned_cols=100  Identities=18%  Similarity=0.155  Sum_probs=66.7

Q ss_pred             CCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc-CCccccC
Q 040254           50 LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ-VPPRLGN  128 (555)
Q Consensus        50 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~  128 (555)
                      +.+++.|++.++.+. +|.  +...++.|++|.||-|.|+...     .+.   .+.+|++|+|..|.|.+. -...+.+
T Consensus        18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~-----pl~---rCtrLkElYLRkN~I~sldEL~YLkn   86 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLA-----PLQ---RCTRLKELYLRKNCIESLDELEYLKN   86 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccch-----hHH---HHHHHHHHHHHhcccccHHHHHHHhc
Confidence            456777888888877 444  4777888888888888887432     222   455788888888887752 1234677


Q ss_pred             CCCCcEEEccCCCCCCCCcH-----hhhcCCCCCeeE
Q 040254          129 CSRLKSFQAGYSNLLRSLPD-----DIYAAASLEEPS  160 (555)
Q Consensus       129 l~~L~~L~L~~~~~~~~~~~-----~~~~l~~L~~L~  160 (555)
                      +++|+.|.|..|...+.-+.     .+.-+++|+.||
T Consensus        87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888888887776554432     244456665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.57  E-value=0.0015  Score=59.03  Aligned_cols=109  Identities=16%  Similarity=0.119  Sum_probs=69.1

Q ss_pred             HHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC--cCCccCCccccCCCCCcEEEccCCCCCC-CCc
Q 040254           71 SFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN--DFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLP  147 (555)
Q Consensus        71 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~  147 (555)
                      .+..+..|+.|++.+..++..  ..+|      .+++|+.|.++.|  ++.+.+......+++|+++++++|++.. .--
T Consensus        38 l~d~~~~le~ls~~n~gltt~--~~~P------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl  109 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL--TNFP------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL  109 (260)
T ss_pred             ccccccchhhhhhhccceeec--ccCC------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence            344567777777777766622  2333      3458888888888  5554444445566888888888887642 111


Q ss_pred             HhhhcCCCCCeeEeecccCcccc---cccccCCCCCcEEEccc
Q 040254          148 DDIYAAASLEEPSLHFNKLSGFI---SNDIINLTSLLVLELYS  187 (555)
Q Consensus       148 ~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~  187 (555)
                      ..+..+.+|..|++.+|..+...   ...|.-+++|++|+-..
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            23556777888888887766532   22355677777776533

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.52  E-value=0.00016  Score=69.32  Aligned_cols=255  Identities=18%  Similarity=0.105  Sum_probs=113.0

Q ss_pred             CCCCCCEEEccCCc-CcCcCchhHHhcCCCCCEEEccCC-cCccccCCCCccccccCCCCCccEEEccCCcC-Cc-cCCc
Q 040254           49 NLTHISHLNLSHNH-VHGPLPINSFHFLTLLEIIDLSYN-SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDF-SS-QVPP  124 (555)
Q Consensus        49 ~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l-~~-~~~~  124 (555)
                      .++++++|.+.++. +++.--..+-+.+++|++|++..| .+++..-..   +.  ..+++|++|+++.+.- ++ -+..
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~---la--~gC~kL~~lNlSwc~qi~~~gv~~  236 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY---LA--EGCRKLKYLNLSWCPQISGNGVQA  236 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH---HH--HhhhhHHHhhhccCchhhcCcchH
Confidence            46666666666653 222222233445666777776663 333321111   11  1455677777766632 22 1112


Q ss_pred             cccCCCCCcEEEccCCCCCCCCcHhhh----cCCCCCeeEeeccc-Cccccc-ccccCCCCCcEEEcccCccccCC-CcC
Q 040254          125 RLGNCSRLKSFQAGYSNLLRSLPDDIY----AAASLEEPSLHFNK-LSGFIS-NDIINLTSLLVLELYSKELIGSI-PRD  197 (555)
Q Consensus       125 ~~~~l~~L~~L~L~~~~~~~~~~~~~~----~l~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~-~~~  197 (555)
                      .+.++..++.+.+.+|.-.+.  ..+.    ....+..+++..+. ++.... ..-..+..|+.|+.+++...+.. -..
T Consensus       237 ~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a  314 (483)
T KOG4341|consen  237 LQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA  314 (483)
T ss_pred             HhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH
Confidence            234455555555554322111  1111    12223344433332 221110 11124566777777665432211 111


Q ss_pred             c-cCCCCCCeeeCccCcC-cccCCccc-cCCCCCCEEECcCccCcccc-CcccccCCCCCcEEEccccccc-cccc----
Q 040254          198 I-GKLTNLKYLLLYRNNL-SGSLPSSM-MNCTNLKTLNLMGNLFAGNL-SAYNFSVLSQLETIDLYINMFT-GSFL----  268 (555)
Q Consensus       198 l-~~l~~L~~L~L~~n~l-~~~~~~~l-~~~~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~~~-~~~~----  268 (555)
                      + ...++|+.+-++.++- +..-...+ .+++.|+.+++..+...... ....-..++.|+.+.++++... +...    
T Consensus       315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~  394 (483)
T KOG4341|consen  315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS  394 (483)
T ss_pred             HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence            2 3456777777776652 21111111 34556777777665433111 0012234667777777765432 2111    


Q ss_pred             ccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccc
Q 040254          269 LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN  317 (555)
Q Consensus       269 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n  317 (555)
                      ..-.....++.+.++.++...+.  .+.     .+..|++|+.+++.+.
T Consensus       395 ~~~c~~~~l~~lEL~n~p~i~d~--~Le-----~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  395 SSSCSLEGLEVLELDNCPLITDA--TLE-----HLSICRNLERIELIDC  436 (483)
T ss_pred             hccccccccceeeecCCCCchHH--HHH-----HHhhCcccceeeeech
Confidence            11223456666666666543111  011     2345566666665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.84  E-value=0.0016  Score=67.80  Aligned_cols=115  Identities=19%  Similarity=0.019  Sum_probs=55.9

Q ss_pred             CCCCCEEEccCCcCcCcCc-hhHHhcCCCCCEEEccCC-cCccccCCCCccccccCCCCCccEEEccCCc-CCccCCccc
Q 040254           50 LTHISHLNLSHNHVHGPLP-INSFHFLTLLEIIDLSYN-SLSGELTGLIPSLAWNHSFCSMRLLDFSYND-FSSQVPPRL  126 (555)
Q Consensus        50 l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~  126 (555)
                      ++.|+.+.+..+.-..... ......++.|+.|+++++ ......+.......  ..+++|+.|+++++. +++..-.++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL--SICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh--hhcCCcCccchhhhhccCchhHHHH
Confidence            5667777766663221211 233445777777777763 21111111111111  134567777777766 443222333


Q ss_pred             c-CCCCCcEEEccCCCC-CCC-CcHhhhcCCCCCeeEeecccC
Q 040254          127 G-NCSRLKSFQAGYSNL-LRS-LPDDIYAAASLEEPSLHFNKL  166 (555)
Q Consensus       127 ~-~l~~L~~L~L~~~~~-~~~-~~~~~~~l~~L~~L~l~~n~i  166 (555)
                      . .+++|++|.+..+.. +.. +......++.|++|+++++..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            2 366777777665542 211 122233456677777776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.00053  Score=62.26  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=16.3

Q ss_pred             CCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCC
Q 040254          104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSN  141 (555)
Q Consensus       104 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~  141 (555)
                      .|+.|++|.||-|.|++.  ..+..|++|+.|+|..|.
T Consensus        39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~   74 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNC   74 (388)
T ss_pred             hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcc
Confidence            344555555555555421  124444444444444443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.64  E-value=0.00013  Score=74.20  Aligned_cols=135  Identities=27%  Similarity=0.300  Sum_probs=79.9

Q ss_pred             CCccEEEccCcccccc----cchhhhCCCCCcEEEccCCcccc----ccCcccc----CCCCCcEEEccCccCccccc--
Q 040254          336 QNLRAVSLAGCQLTGQ----VPLWLSKLTKLEVLLLSGNQITG----SIPGWFG----NLPSLFYFALSQNNISGEFP--  401 (555)
Q Consensus       336 ~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~----~l~~L~~L~L~~n~l~~~~~--  401 (555)
                      +.+++|++..|.++..    +...+.....++.++++.|.+..    .++..+.    ...++++|++++|.++...-  
T Consensus       144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~  223 (478)
T KOG4308|consen  144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL  223 (478)
T ss_pred             HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence            4556666666666532    34455566777888888877642    1222232    45678888888887762111  


Q ss_pred             --hhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc----CChhccCC-CCCCeee
Q 040254          402 --KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR----IPAETGQL-KFLNVLD  474 (555)
Q Consensus       402 --~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~----~~~~~~~l-~~L~~L~  474 (555)
                        ..+...+.+.                                   ..+++..|.+...    ....+..+ ..+++++
T Consensus       224 l~~~l~~~~~~~-----------------------------------~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~  268 (478)
T KOG4308|consen  224 LDEVLASGESLL-----------------------------------RELDLASNKLGDVGVEKLLPCLSVLSETLRVLD  268 (478)
T ss_pred             HHHHHhccchhh-----------------------------------HHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence              1112211111                                   1355666655432    22334445 6778889


Q ss_pred             CCCccceee----cchhhhCCccCCeeeCCCCCCC
Q 040254          475 LGNNNFAGS----IPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       475 Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      ++.|.|++.    ..+.+..++.++++.+++|.+.
T Consensus       269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            999988754    3445667788999999999887

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.54  E-value=0.0057  Score=32.78  Aligned_cols=21  Identities=48%  Similarity=0.686  Sum_probs=14.2

Q ss_pred             CCCeeeCCCccceeecchhhhC
Q 040254          469 FLNVLDLGNNNFAGSIPNQISQ  490 (555)
Q Consensus       469 ~L~~L~Ls~N~l~~~~~~~l~~  490 (555)
                      +|++|||++|+|+ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3677888888777 56655554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.05  E-value=0.0047  Score=64.35  Aligned_cols=169  Identities=18%  Similarity=0.121  Sum_probs=96.2

Q ss_pred             ccccCCCCCCEEEccCC-cCcCcCc---hhHHhcCCCCCEEEccCCc-CccccCCCCccccccCCCCCccEEEccCCc-C
Q 040254           45 PSIGNLTHISHLNLSHN-HVHGPLP---INSFHFLTLLEIIDLSYNS-LSGELTGLIPSLAWNHSFCSMRLLDFSYND-F  118 (555)
Q Consensus        45 ~~~~~l~~L~~L~L~~n-~~~~~i~---~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l  118 (555)
                      +....+++|+.|+++++ ......+   ......+++|+.|+++.+. +++.....+..     .+++|++|.+.++. +
T Consensus       208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~-----~c~~L~~L~l~~c~~l  282 (482)
T KOG1947|consen  208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS-----RCPNLETLSLSNCSNL  282 (482)
T ss_pred             HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh-----hCCCcceEccCCCCcc
Confidence            45677899999999873 2111222   2355668999999999987 55432222211     36789999988887 5


Q ss_pred             Ccc-CCccccCCCCCcEEEccCCCCCCC--CcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccc---c
Q 040254          119 SSQ-VPPRLGNCSRLKSFQAGYSNLLRS--LPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELI---G  192 (555)
Q Consensus       119 ~~~-~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~  192 (555)
                      ++. +.....+++.|++|+++++.....  +.....++++++.|.+....          .+..++.+.+.+....   .
T Consensus       283 t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~  352 (482)
T KOG1947|consen  283 TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCPSLTDLSLSGLLTLTSDD  352 (482)
T ss_pred             chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCccHHHHHHHHhhccCchh
Confidence            542 233356789999999998776422  22233445666665443322          1334444444332221   1


Q ss_pred             CCCcCccCCCCCCeeeCccCcCcccC-CccccCCCCC
Q 040254          193 SIPRDIGKLTNLKYLLLYRNNLSGSL-PSSMMNCTNL  228 (555)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L  228 (555)
                      ........+++++.+.+.++...... ...+..++.|
T Consensus       353 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  353 LAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            11123456677777777776633211 1334445554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.53  E-value=0.017  Score=30.93  Aligned_cols=18  Identities=39%  Similarity=0.700  Sum_probs=8.8

Q ss_pred             CcEEEccCccCccccchhh
Q 040254          386 LFYFALSQNNISGEFPKEL  404 (555)
Q Consensus       386 L~~L~L~~n~l~~~~~~~~  404 (555)
                      |++|+|++|+++ .+|..+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.94  E-value=0.057  Score=30.20  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=17.3

Q ss_pred             CCCCCEEEccCCcCcCcCchhHHh
Q 040254           50 LTHISHLNLSHNHVHGPLPINSFH   73 (555)
Q Consensus        50 l~~L~~L~L~~n~~~~~i~~~~~~   73 (555)
                      +++|++|+|++|.+. .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            457788888888887 77877765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.94  E-value=0.057  Score=30.20  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=17.3

Q ss_pred             CCCCCEEEccCCcCcCcCchhHHh
Q 040254           50 LTHISHLNLSHNHVHGPLPINSFH   73 (555)
Q Consensus        50 l~~L~~L~L~~n~~~~~i~~~~~~   73 (555)
                      +++|++|+|++|.+. .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            457788888888887 77877765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.26  E-value=0.04  Score=27.32  Aligned_cols=13  Identities=46%  Similarity=0.636  Sum_probs=5.1

Q ss_pred             CCCeeeCCCccce
Q 040254          469 FLNVLDLGNNNFA  481 (555)
Q Consensus       469 ~L~~L~Ls~N~l~  481 (555)
                      +|++|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555544

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.81  E-value=0.19  Score=28.06  Aligned_cols=14  Identities=43%  Similarity=0.553  Sum_probs=8.8

Q ss_pred             CCCCeeeCCCccce
Q 040254          468 KFLNVLDLGNNNFA  481 (555)
Q Consensus       468 ~~L~~L~Ls~N~l~  481 (555)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666666

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.81  E-value=0.19  Score=28.06  Aligned_cols=14  Identities=43%  Similarity=0.553  Sum_probs=8.8

Q ss_pred             CCCCeeeCCCccce
Q 040254          468 KFLNVLDLGNNNFA  481 (555)
Q Consensus       468 ~~L~~L~Ls~N~l~  481 (555)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666666

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.20  E-value=0.0023  Score=65.23  Aligned_cols=46  Identities=26%  Similarity=0.333  Sum_probs=29.5

Q ss_pred             CChhccCCCCCCeeeCCCccceeecchhh----hCCccCCeeeCCCCCCC
Q 040254          460 IPAETGQLKFLNVLDLGNNNFAGSIPNQI----SQLTILERLDLSKNHLS  505 (555)
Q Consensus       460 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~l~~L~~L~Ls~N~l~  505 (555)
                      ++..+...+.+++++++.|...+.-+..+    .....++.++++.|+++
T Consensus       396 l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  445 (478)
T KOG4308|consen  396 LAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPIT  445 (478)
T ss_pred             hhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhh
Confidence            34445666778888888886654433222    22227888888888887

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.71  E-value=0.015  Score=51.62  Aligned_cols=46  Identities=13%  Similarity=0.092  Sum_probs=24.0

Q ss_pred             cCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          459 RIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       459 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      ..|..+.+...++.+++.+|... ..|.++++.+.++++++.+|.++
T Consensus        79 ~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   79 FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            34444444444444555555554 45555555556666666555553

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.93  E-value=0.12  Score=28.16  Aligned_cols=19  Identities=32%  Similarity=0.373  Sum_probs=11.0

Q ss_pred             CCCCeeeCCCccceeecch
Q 040254          468 KFLNVLDLGNNNFAGSIPN  486 (555)
Q Consensus       468 ~~L~~L~Ls~N~l~~~~~~  486 (555)
                      ++|++|+|++|+|++....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHH
Confidence            5677777777777654433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.65  E-value=0.021  Score=50.81  Aligned_cols=91  Identities=21%  Similarity=0.243  Sum_probs=69.7

Q ss_pred             hhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCc
Q 040254          354 LWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQN  433 (555)
Q Consensus       354 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~  433 (555)
                      ..+......+.||++.|++. .+-..|+.++.|..|+++.|++. ..|..+.+++++.                      
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~----------------------   91 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETV----------------------   91 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHH----------------------
Confidence            34556678888999999887 44455777788889999988887 7777777777665                      


Q ss_pred             ccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceee
Q 040254          434 STSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGS  483 (555)
Q Consensus       434 ~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  483 (555)
                                    .+++..|..+ ..|..+...+.++.+++-.|.++..
T Consensus        92 --------------~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~~  126 (326)
T KOG0473|consen   92 --------------NAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFRK  126 (326)
T ss_pred             --------------HHHhhccchh-hCCccccccCCcchhhhccCcchHH
Confidence                          2566666666 7888899999999999999987633

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=87.61  E-value=3.6  Score=41.14  Aligned_cols=110  Identities=21%  Similarity=0.170  Sum_probs=58.2

Q ss_pred             CCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhh---cCCCCCeeEeecccCcccccccc---cCC
Q 040254          104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIY---AAASLEEPSLHFNKLSGFISNDI---INL  177 (555)
Q Consensus       104 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~---~l~~L~~L~l~~n~i~~~~~~~~---~~l  177 (555)
                      ..+.+++++++.|.+....|-.+..-..  -+.++.|......-..+.   .-..+.+++++.|......+..+   ..-
T Consensus       163 pnpr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~  240 (553)
T KOG4242|consen  163 PNPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT  240 (553)
T ss_pred             CcchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence            3455788888888877655544432111  144454444332211111   12346778888887766554332   223


Q ss_pred             CCCcEEEcccCcccc---CCCcCccCCCCCCeeeCccCcCc
Q 040254          178 TSLLVLELYSKELIG---SIPRDIGKLTNLKYLLLYRNNLS  215 (555)
Q Consensus       178 ~~L~~L~L~~n~~~~---~~~~~l~~l~~L~~L~L~~n~l~  215 (555)
                      ..++.++.++..+..   ..+...+..++++..+++.|...
T Consensus       241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s  281 (553)
T KOG4242|consen  241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS  281 (553)
T ss_pred             hhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence            346666666655431   12223345567777787777654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.65  E-value=0.14  Score=44.82  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             CCCCccEEEccCc-ccccccchhhhCCCCCcEEEccC
Q 040254          334 GFQNLRAVSLAGC-QLTGQVPLWLSKLTKLEVLLLSG  369 (555)
Q Consensus       334 ~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~  369 (555)
                      ..++|+.|++++| .|++..-.++..+++|+.|.+.+
T Consensus       149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            3466667777665 45554555566666666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.40  E-value=0.17  Score=44.24  Aligned_cols=79  Identities=16%  Similarity=0.134  Sum_probs=39.6

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc-Hhhh-cCCCCCeeEeecc-cCcccccccccCCCCCcEE
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP-DDIY-AAASLEEPSLHFN-KLSGFISNDIINLTSLLVL  183 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L  183 (555)
                      .++.+|.++..|..+.-+.+.+++.++.|.+.+|....... +.++ -.++|+.|++++| +|++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            46777777777665555556666777777766554332210 0011 1245555555544 2443333334444444444


Q ss_pred             Ec
Q 040254          184 EL  185 (555)
Q Consensus       184 ~L  185 (555)
                      .+
T Consensus       182 ~l  183 (221)
T KOG3864|consen  182 HL  183 (221)
T ss_pred             Hh
Confidence            44

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.98  E-value=1.2  Score=24.88  Aligned_cols=15  Identities=60%  Similarity=0.787  Sum_probs=12.3

Q ss_pred             CccCCeeeCCCCCCC
Q 040254          491 LTILERLDLSKNHLS  505 (555)
Q Consensus       491 l~~L~~L~Ls~N~l~  505 (555)
                      +.+|++|++++|+|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            457888999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	555
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-23
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-23
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-13

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 203/462 (43%), Gaps = 35/462 (7%)
Query: 44  LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-LTGLIPSLAWN 102
           L S+G+ + +  LN+S N +  P  ++    L  LE++DLS NS+SG  + G + S    
Sbjct: 116 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 175
Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
                ++ L  S N  S  V   +  C  L+      +N    +P  +   ++L+   + 
Sbjct: 176 E----LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 228
Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSM 222
            NKLSG  S  I   T L +L + S + +G IP                   +G +P  +
Sbjct: 229 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 286
Query: 223 MN-CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF-LLTLTSCRLLTAL 280
              C  L  L+L GN F G +  + F   S LE++ L  N F+G   + TL   R L  L
Sbjct: 287 SGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 345
Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
            L+ N+  G++P  +  L + +L       +   + NF     PN  QN        L+ 
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLT------LDLSSNNFSGPILPNLCQNPK----NTLQE 395
Query: 341 VSLAGCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEF 400
           + L     TG++P                N ++G+IP   G+L  L    L  N + GE 
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 401 PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRI 460
           P+EL  ++ L      FN    ++P  L    N T+  +         I L+NN L+G I
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGL---SNCTNLNW---------ISLSNNRLTGEI 503
Query: 461 PAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN 502
           P   G+L+ L +L L NN+F+G+IP ++     L  LDL+ N
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 203/462 (43%), Gaps = 35/462 (7%)
Query: 44  LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-LTGLIPSLAWN 102
           L S+G+ + +  LN+S N +  P  ++    L  LE++DLS NS+SG  + G + S    
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
                ++ L  S N  S  V   +  C  L+      +N    +P  +   ++L+   + 
Sbjct: 179 E----LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231
Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSM 222
            NKLSG  S  I   T L +L + S + +G IP                   +G +P  +
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289
Query: 223 MN-CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF-LLTLTSCRLLTAL 280
              C  L  L+L GN F G +  + F   S LE++ L  N F+G   + TL   R L  L
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
            L+ N+  G++P  +  L + +L       +   + NF     PN  QN        L+ 
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLT------LDLSSNNFSGPILPNLCQNPK----NTLQE 398
Query: 341 VSLAGCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEF 400
           + L     TG++P                N ++G+IP   G+L  L    L  N + GE 
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 401 PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRI 460
           P+EL  ++ L      FN    ++P  L    N T+  +         I L+NN L+G I
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGL---SNCTNLNW---------ISLSNNRLTGEI 506
Query: 461 PAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN 502
           P   G+L+ L +L L NN+F+G+IP ++     L  LDL+ N
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 112/251 (44%), Gaps = 33/251 (13%)
Query: 285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLA 344
           N L G IPP I KL  L        + L++T   ++ A P++         + L  +  +
Sbjct: 87  NNLVGPIPPAIAKLTQL--------HYLYITHTNVSGAIPDFLSQ-----IKTLVTLDFS 133
Query: 345 GCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFY-FALSQNNISGEFPKE 403
              L+G +P               GN+I+G+IP  +G+   LF    +S+N ++G+ P  
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 404 LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAE 463
            + L    ++ ++ N  + D       ++N+              I LA NSL+  +  +
Sbjct: 194 FANLNLAFVDLSR-NMLEGDASVLFGSDKNTQK------------IHLAKNSLAFDL-GK 239
Query: 464 TGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFP 523
            G  K LN LDL NN   G++P  ++QL  L  L+     +S NNL G IP GG L  F 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN-----VSFNNLCGEIPQGGNLQRFD 294
Query: 524 PSSFEGNPEFC 534
            S++  N   C
Sbjct: 295 VSAYANNKCLC 305

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	555
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  296 bits (759), Expect = 2e-91
 Identities = 138/583 (23%), Positives = 221/583 (37%), Gaps = 115/583 (19%)

Query: 44  LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE------------ 91
           +P +G+ + + HL++S N + G     +    T L+++++S N   G             
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274

Query: 92  ------LTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRS 145
                  TG IP    + +  ++  LD S N F   VPP  G+CS L+S     +N    
Sbjct: 275 SLAENKFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 146 LPDD-IYAAASLEEPSLHFNKLSGFISNDIINLT-SLLVLELYSKELIGSIPRDIGK--L 201
           LP D +     L+   L FN+ SG +   + NL+ SLL L+L S    G I  ++ +   
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

Query: 202 TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
             L+ L L  N  +G +P ++ NC+ L +L+L  N  +G + + +   LS+L  + L++N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLN 452

Query: 262 MFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNE 321
           M  G     L   + L  L L  N L G+IP  +          C NLN + L+ N    
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN--------CTNLNWISLSNN---- 500

Query: 322 ATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFG 381
                                    +LTG++P W+ +L  L +L LS N  +G+IP   G
Sbjct: 501 -------------------------RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 382 NLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR 441
           +  SL +  L+ N  +G  P  + +    +       +    +       +   +     
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

Query: 442 IFGLRP----------TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQL 491
             G+R              + +    G           +  LD+  N  +G IP +I  +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 492 TILERLDLSKNH-------------------LSENNL----------------------- 509
             L  L+L  N                    LS N L                       
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715

Query: 510 -QGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSSTTEPRTTTN 551
             GPIP  GQ  TFPP+ F  NP  C     R   +      +
Sbjct: 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH 758

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  269 bits (689), Expect = 3e-81
 Identities = 126/485 (25%), Positives = 193/485 (39%), Gaps = 67/485 (13%)

Query: 36  NKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLP--INSFHFLTLLEIIDLSYNSLSGELT 93
           N L     +     L  +  L+LS N + G              L+ + +S N +SG+  
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD-- 193

Query: 94  GLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA 153
             +          ++  LD S N+FS+ + P LG+CS L+      + L       I   
Sbjct: 194 --VDVS----RCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTC 246

Query: 154 ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRN 212
             L+  ++  N+  G I      L SL  L L   +  G IP  + G    L  L L  N
Sbjct: 247 TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 213 NLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLT 272
           +  G++P    +C+ L++L L  N F+G L       +  L+ +DL  N F+G    +LT
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 273 SCRL-LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKI 331
           +    L  L L+ N   G I P + +           L  L+L  N      P    N  
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPK------NTLQELYLQNNGFTGKIPPTLSN-- 416

Query: 332 SDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFAL 391
                 L ++ L+   L+G +P  L  L+KL  L L  N + G IP     + +L    L
Sbjct: 417 ---CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 392 SQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFL 451
             N+++GE P  LS    L                                      I L
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNW------------------------------------ISL 497

Query: 452 ANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQG 511
           +NN L+G IP   G+L+ L +L L NN+F+G+IP ++     L  LDL+ N  +     G
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN-----G 552

Query: 512 PIPSG 516
            IP+ 
Sbjct: 553 TIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  249 bits (637), Expect = 8e-74
 Identities = 121/481 (25%), Positives = 186/481 (38%), Gaps = 98/481 (20%)

Query: 44  LPSIGNLTHISHLNLSHNHVHGPLP-INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
           +        ++ L+LS N + GP+  + S    + L+ +++S N+L     G +      
Sbjct: 93  VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--PGKVSGGL-- 148

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
               S+ +LD S N  S                       L+ L             ++ 
Sbjct: 149 -KLNSLEVLDLSANSISGANVVGWVLSDGCGE--------LKHL-------------AIS 186

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM 222
            NK+SG +   +    +L  L++ S      IP  +G  + L++L +  N LSG    ++
Sbjct: 187 GNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI 243

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLT-SCRLLTALR 281
             CT LK LN+  N F G +       L  L+ + L  N FTG     L+ +C  LT L 
Sbjct: 244 STCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

Query: 282 LACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAV 341
           L+ N   G +PP                                            L ++
Sbjct: 301 LSGNHFYGAVPPFFGSC-------------------------------------SLLESL 323

Query: 342 SLAGCQLTGQVPL-WLSKLTKLEVLLLSGNQITGSIPGWFGNL-PSLFYFALSQNNISGE 399
           +L+    +G++P+  L K+  L+VL LS N+ +G +P    NL  SL    LS NN SG 
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 400 FPKEL-----SRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANN 454
               L     + LQ L ++ N F      +P  L    N +             + L+ N
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGK---IPPTLS---NCSELVS---------LHLSFN 428

Query: 455 SLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIP 514
            LSG IP+  G L  L  L L  N   G IP ++  +  LE L L  N L+     G IP
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-----GEIP 483

Query: 515 S 515
           S
Sbjct: 484 S 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  218 bits (557), Expect = 2e-62
 Identities = 122/441 (27%), Positives = 184/441 (41%), Gaps = 66/441 (14%)

Query: 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKL 166
           S+ L     N   S V   L + + L+S     S++  S+      +ASL    L  N L
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSL 112

Query: 167 SGFISND--IINLTSLLVLELYSKELIGSIPRDIG-KLTNLKYLLLYRNNLSGSLPSSMM 223
           SG ++    + + + L  L + S  L        G KL +L+ L L  N++SG+     +
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 224 ---NCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280
               C  LK L + GN  +G++     S    LE +D+  N F+   +  L  C  L  L
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTG-IPFLGDCSALQHL 228

Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
            ++ N+L G     I          C  L +L ++ N      P           ++L+ 
Sbjct: 229 DISGNKLSGDFSRAIST--------CTELKLLNISSNQFVGPIP-------PLPLKSLQY 273

Query: 341 VSLAGCQLTGQVPLWLS-KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGE 399
           +SLA  + TG++P +LS     L  L LSGN   G++P +FG+   L   ALS NN SGE
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 400 FPKE----LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNS 455
            P +    +  L+ L +  N+F+   P+    L  +             L  T+ L++N+
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS-------------LL-TLDLSSNN 379

Query: 456 LSGRIPAETGQ--LKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS-------- 505
            SG I     Q     L  L L NN F G IP  +S  + L  L LS N+LS        
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 506 -----------ENNLQGPIPS 515
                       N L+G IP 
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  189 bits (483), Expect = 3e-52
 Identities = 93/389 (23%), Positives = 149/389 (38%), Gaps = 82/389 (21%)

Query: 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNL 214
           S++  S   N     +S+ +++LT L  L L +  + GS+        +L  L L RN+L
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSL 112

Query: 215 SGSLPS--SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF---LL 269
           SG + +  S+ +C+ LK LN+  N             L+ LE +DL  N  +G+     +
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 270 TLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQN 329
               C  L  L ++ N++ G +           +  C NL  L ++ N            
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD----------VSRCVNLEFLDVSSN------------ 210

Query: 330 KISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYF 389
                              +  +P +L   + L+ L +SGN+++G           L   
Sbjct: 211 -----------------NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 390 ALSQNNISGEFPKE-LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPT 448
            +S N   G  P   L  LQ L + +NKF      +P FL    ++          L   
Sbjct: 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGE---IPDFLSGACDT----------LT-G 298

Query: 449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQ-ISQLTILERLDLSKNH---- 503
           + L+ N   G +P   G    L  L L +NNF+G +P   + ++  L+ LDLS N     
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 504 ----------------LSENNLQGPIPSG 516
                           LS NN  GPI   
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 1e-20
 Identities = 47/196 (23%), Positives = 70/196 (35%), Gaps = 33/196 (16%)

Query: 336 QNLRAVSLAGCQLT---GQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS 392
             + ++ L+   L      V   L  LT LE L LS + I GS+   F    SL    LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 393 QNNISGEFPKE-----LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRP 447
           +N++SG           S L+ L +  N  +            +             L  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS-------------LE- 154

Query: 448 TIFLANNSLSGRIPAE---TGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHL 504
            + L+ NS+SG        +     L  L +  N  +G +   +S+   LE LD+S    
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS---- 208

Query: 505 SENNLQGPIPSGGQLH 520
             NN    IP  G   
Sbjct: 209 -SNNFSTGIPFLGDCS 223

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (446), Expect = 1e-50
 Identities = 84/383 (21%), Positives = 129/383 (33%), Gaps = 111/383 (28%)

Query: 159 PSLHF--NKLSGFISNDIINLTSLLVLELYSKELIGS--IPRDIGKLTNLKYLLLY-RNN 213
           P+         G + +       +  L+L    L     IP  +  L  L +L +   NN
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 214 LSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTS 273
           L G +P ++   T L  L                          +     +G+    L+ 
Sbjct: 89  LVGPIPPAIAKLTQLHYL-------------------------YITHTNVSGAIPDFLSQ 123

Query: 274 CRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD 333
            + L  L  + N L G +PP I            NL  +    N                
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISS--------LPNLVGITFDGN---------------- 159

Query: 334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKL-EVLLLSGNQITGSIPGWFGNLPSLFYFALS 392
                        +++G +P      +KL   + +S N++TG IP  F NL +L +  LS
Sbjct: 160 -------------RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205

Query: 393 QNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLA 452
           +N + G+        +                                        I LA
Sbjct: 206 RNMLEGDASVLFGSDKNTQ------------------------------------KIHLA 229

Query: 453 NNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGP 512
            NSL+  +  + G  K LN LDL NN   G++P  ++QL  L  L+     +S NNL G 
Sbjct: 230 KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN-----VSFNNLCGE 283

Query: 513 IPSGGQLHTFPPSSFEGNPEFCS 535
           IP GG L  F  S++  N   C 
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  162 bits (412), Expect = 9e-46
 Identities = 75/344 (21%), Positives = 117/344 (34%), Gaps = 81/344 (23%)

Query: 146 LPDDIYAAASLEEPSLHFNKLSG--FISNDIINLTSLLVLELYS-KELIGSIPRDIGKLT 202
           L D       +    L    L     I + + NL  L  L +     L+G IP  I KLT
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 203 NLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM 262
            L YL +   N+SG++P  +     L TL+   N  +G L   + S L  L  I    N 
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNR 160

Query: 263 FTGSFLLTLTSCR-LLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNE 321
            +G+   +  S   L T++ ++ N+L G+IPP    L                       
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----------------------- 197

Query: 322 ATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFG 381
                          NL  V L+   L G   +        + + L+ N +   +    G
Sbjct: 198 ---------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG 241

Query: 382 NLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR 441
              +L    L  N I G  P+ L++L+ L                               
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLH------------------------------ 271

Query: 442 IFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIP 485
                 ++ ++ N+L G IP + G L+  +V    NN      P
Sbjct: 272 ------SLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  150 bits (381), Expect = 2e-41
 Identities = 63/275 (22%), Positives = 110/275 (40%), Gaps = 21/275 (7%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPI-NSFHFLTLLEIIDLS-YNSLSGELTGLIPSLAWNH 103
           +      +++L+LS  ++  P PI +S   L  L  + +   N+L G     IP      
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKL 100

Query: 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
           +   +  L  ++ + S  +P  L     L +    Y+ L  +LP  I +  +L   +   
Sbjct: 101 T--QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 164 NKLSGFISNDIINLTSLL-VLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM 222
           N++SG I +   + + L   + +    L G IP     L NL ++ L RN L G      
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL 282
            +  N + ++L  N  A +L      +   L  +DL  N   G+    LT  + L +L +
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 283 ACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317
           + N L G+IP              +  +V     N
Sbjct: 276 SFNNLCGEIPQGGN---------LQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  147 bits (374), Expect = 2e-40
 Identities = 76/356 (21%), Positives = 127/356 (35%), Gaps = 76/356 (21%)

Query: 46  SIGNLTHIS----HLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAW 101
            +GN T +S      +  +    G L  ++      +  +DLS  +L       IPS   
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLC-DTDTQTYRVNNLDLSGLNLPK--PYPIPSSLA 73

Query: 102 NHSFCSMRLLDFS-YNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPS 160
           N  +  +  L     N+    +PP +   ++L                            
Sbjct: 74  NLPY--LNFLYIGGINNLVGPIPPAIAKLTQLHYL------------------------Y 107

Query: 161 LHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS 220
           +    +SG I + +  + +L+ L+     L G++P  I  L NL  +    N +SG++P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 221 SMMNCTNLKT-LNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTA 279
           S  + + L T + +  N   G +    F+ L+ L  +DL  NM  G   +   S +    
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 280 LRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLR 339
           + LA N L   +           +   KNLN L L  N                      
Sbjct: 226 IHLAKNSLAFDLGK---------VGLSKNLNGLDLRNN---------------------- 254

Query: 340 AVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395
                  ++ G +P  L++L  L  L +S N + G IP   GNL      A + N 
Sbjct: 255 -------RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  112 bits (283), Expect = 9e-28
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 33/192 (17%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
           PSI +L ++  +    N + G +P +   F  L   + +S N L+G+    IP    N  
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK----IPPTFAN-- 196

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164
             ++  +D S N          G+    +                           L  N
Sbjct: 197 -LNLAFVDLSRNMLEGDASVLFGSDKNTQKI------------------------HLAKN 231

Query: 165 KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMN 224
            L+  +   +    +L  L+L +  + G++P+ + +L  L  L +  NNL G +P    N
Sbjct: 232 SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289

Query: 225 CTNLKTLNLMGN 236
                      N
Sbjct: 290 LQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            L  +G   +++ L+L +N ++G LP      L  L  +++S+N+L GE    IP     
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGE----IPQGG-- 288

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCS 130
            +     +  ++ N      P  L  C+
Sbjct: 289 -NLQRFDVSAYANNKCLCGSP--LPACT 313

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (472), Expect = 1e-50
 Identities = 76/530 (14%), Positives = 158/530 (29%), Gaps = 83/530 (15%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
            +IG LT +  L+   +       +         ++ +   + +      +   L ++  
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRL-FGDEELTPDMSEERKHRIRMHYKKMF--LDYDQR 397

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQ-AGYSNLLRSLPDDIYAAASLEEPSLHF 163
                LL  + N      P +  +   LK  Q    +N +  +   I     L+      
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 164 NKLSGF-------------------ISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNL 204
           +  +                           NL  L  +ELY+   +  +P  +  L  L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

Query: 205 KYLLLYRNNLSG---------SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLET 255
           + L +  N              L         ++   +  N      ++ +   + +L  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 256 IDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIK----LKSLIL-------- 303
           +D   N      L    +   LT L+L  NQ+E +IP +       ++ L          
Sbjct: 578 LDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 304 ------MGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS 357
                      +  +  + N +     N   +       N   V+L+  ++        +
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 358 KLTKLEVLLLSGNQIT-------GSIPGWFGNLPSLFYFALSQNNISGEFPKE-----LS 405
             + +  ++LS N +T           G + N   L    L  N ++     +     L 
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753

Query: 406 RLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETG 465
            L  + +  N F+      P     +         + FG+R       N +  + P    
Sbjct: 754 YLSNMDVSYNCFS----SFPTQPLNSSQL------KAFGIRHQRDAEGNRILRQWPTGIT 803

Query: 466 QLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPS 515
               L  L +G+N+    +  ++     L  LD++ N      +   + S
Sbjct: 804 TCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPN----ISIDVTS 846

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  177 bits (451), Expect = 9e-48
 Identities = 65/531 (12%), Positives = 138/531 (25%), Gaps = 98/531 (18%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG-----ELTGLIPSLA 100
            + N   ++ L+L+     G +P ++   LT L+++    +S +          L P ++
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 101 WN--------------HSFCSMRLLDFSYNDFSSQ---VPPRLGNCSRLKSFQ-AGYSNL 142
                                + L D   +  +      P +  +   LK  Q    +N 
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 143 LRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLT 202
           +  +   I     L+      +  +                     +   +       L 
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 203 NLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYN--------FSVLSQLE 254
           +L  + LY       LP  + +   L++LN+  N                       +++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 255 TIDLYINMFTG-SFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL------------ 301
              +  N         +L     L  L    N++             L            
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE 609

Query: 302 ----ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQ-----V 352
                      +  L  + N +      ++   +      + +V  +  ++  +      
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV----YVMGSVDFSYNKIGSEGRNISC 665

Query: 353 PLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKE--------- 403
            +   K      + LS N+I       F     +    LS N ++   P+          
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY 724

Query: 404 --LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIP 461
                L  + +  NK      D      P              L   + ++ N  S   P
Sbjct: 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPY-------------LS-NMDVSYNCFSS-FP 769

Query: 462 AETGQLKFLNVLDL------GNNNFAGSIPNQISQLTILERLDLSKNHLSE 506
            +      L    +        N      P  I+    L +L +  N + +
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  149 bits (377), Expect = 4e-38
 Identities = 69/503 (13%), Positives = 143/503 (28%), Gaps = 82/503 (16%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHG------PLPINSFHFLTLLEIIDLSYNSLSGELTGLI 96
             P +  +   S ++L    +         +   +   LT L+II  + +      T   
Sbjct: 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFIS-KAIQRLTKLQIIYFANSPF----TYDN 464

Query: 97  PSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASL 156
            ++ W          +  Y            N   L   +      +  LPD +Y    L
Sbjct: 465 IAVDWE-------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

Query: 157 EEPSLHFNKLSGF---------ISNDIINLTSLLVLELYSKELIG-SIPRDIGKLTNLKY 206
           +  ++  N+             +++D      + +  +    L        + K+  L  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 207 LLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG- 265
           L    N +      +      L  L L  N     +     +   Q+E +    N     
Sbjct: 578 LDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 266 SFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPN 325
             +    S  ++ ++  + N++       I    S+      N + + L+ N + +    
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGS-EGRNI--SCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 326 YDQNKISDGFQNLRAVSLAGCQLT-------GQVPLWLSKLTKLEVLLLSGNQITGSIP- 377
                +      +  + L+   +T                   L  + L  N++T S+  
Sbjct: 692 -----LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745

Query: 378 -GWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTS 436
                 LP L    +S N  S  FP +      L     +  R+                
Sbjct: 746 DFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDA--------------- 789

Query: 437 HQYNRIFGLRPTIF----------LANNSLSGRIPAETGQLKFLNVLDL-GNNNFAGSIP 485
            + NRI    PT            + +N +   +  +      L +LD+  N N +  + 
Sbjct: 790 -EGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVT 845

Query: 486 NQISQLT-ILERLDLSKNHLSEN 507
           +    +   +  L   K      
Sbjct: 846 SVCPYIEAGMYVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  142 bits (360), Expect = 5e-36
 Identities = 65/449 (14%), Positives = 131/449 (29%), Gaps = 60/449 (13%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLP------------------INSFHFLTLLEIIDLSYN 86
            +I  LT +  +  +++                           S+  L  L  ++L   
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 87  SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS---------QVPPRLGNCSRLKSFQA 137
               +L   +  L        ++ L+ + N   S         ++        +++ F  
Sbjct: 502 PNMTQLPDFLYDLP------ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 138 GYSNLLRSLPD--DIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIP 195
           GY N L   P    +     L       NK+             L  L+L   ++   IP
Sbjct: 556 GY-NNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIE-EIP 611

Query: 196 RDIGK-LTNLKYLLLYRNNLSGSLPS--SMMNCTNLKTLNLMGNLFAGN----LSAYNFS 248
            D       ++ L    N L   +P+  +  +   + +++   N           + +  
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 249 VLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKN 308
                 T+ L  N           +   ++ + L+ N +   IP   +K K         
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL 729

Query: 309 LNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVL--- 365
           L  + L  N +   + ++           L  + ++    +   P      ++L+     
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATT----LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784

Query: 366 ---LLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKP 422
                 GN+I    P      PSL    +  N+I     K   +L  L I  N  N +  
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNP-NISID 843

Query: 423 DLPFFLFPNQNSTSHQYNRIFGLRPTIFL 451
                 +         Y++   +R    L
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  129 bits (325), Expect = 1e-31
 Identities = 67/442 (15%), Positives = 118/442 (26%), Gaps = 75/442 (16%)

Query: 138 GYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRD 197
           G +    S   +    +     +   +        D+ N   +  L L      G +P  
Sbjct: 283 GKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342

Query: 198 IGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID 257
           IG+LT LK L    ++ + S                  +    +          +L   D
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 258 LYINMFTGSFLLTLTSCRLLTALRLACNQLEG------QIPPEIIKLKSL---------- 301
           L  +         +   +  + + L   Q+         I   I +L  L          
Sbjct: 403 LLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 302 -ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLT 360
                  +            E       N      ++L  V L  C    Q+P +L  L 
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSN-----LKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 361 KLEVLLLSGNQITG---------SIPGWFGNLPSLFYFALSQNNISGEFPKE-----LSR 406
           +L+ L ++ N+             +       P +  F +  NN+  EFP       + +
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574

Query: 407 LQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ 466
           L  L    NK       L  F      +          L   + L  N +   IP +   
Sbjct: 575 LGLLDCVHNKVR----HLEAF----GTNVK--------LT-DLKLDYNQIEE-IPEDFCA 616

Query: 467 -LKFLNVLDLGNNNFAGSIPN--QISQLTILERLDLSKNHLSENNLQGPIPSGG------ 517
               +  L   +N     IPN      + ++  +D S N +                   
Sbjct: 617 FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 518 --------QLHTFPPSSFEGNP 531
                   ++  FP   F    
Sbjct: 676 STVTLSYNEIQKFPTELFATGS 697

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  125 bits (316), Expect = 2e-30
 Identities = 61/456 (13%), Positives = 123/456 (26%), Gaps = 77/456 (16%)

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
            +   + +  Q    L N  R+             +PD I     L+  S   +  +   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 171 SNDIINLTSLLVLELYSKELIGSIPR-----------------------DIGKLTNLKYL 207
                   +  + E     +     +                       ++  +     +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 208 LLYRNNLSG------SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
            L    +         +  ++   T L+ +    + F         ++    E  +    
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYA 477

Query: 262 MFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN-FMN 320
               +  L+ ++ + LT + L       Q+P  +  L          L  L +  N  ++
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--------PELQSLNIACNRGIS 529

Query: 321 EATPNYDQNKISDGF---QNLRAVSLAGCQLTG-QVPLWLSKLTKLEVLLLSGNQITGSI 376
            A    D  +++D       ++   +    L        L K+ KL +L    N++   +
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL 588

Query: 377 PGWFGNLPSLFYFALSQNNISGEFPKE----LSRLQPLVIEQNKFNRNKPDLPFFLFPNQ 432
              FG    L    L  N I  E P++      +++ L    NK                
Sbjct: 589 EA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

Query: 433 NSTSHQYNRIFGLRPTIF---------------LANNSLSGRIPAETGQLKFLNVLDLGN 477
            S    YN+I      I                L+ N +             ++ + L N
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 478 NNF-------AGSIPNQISQLTILERLDLSKNHLSE 506
           N                     +L  +DL  N L+ 
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (280), Expect = 5e-26
 Identities = 44/360 (12%), Positives = 102/360 (28%), Gaps = 46/360 (12%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
                   I    + +N++       S   +  L ++D  +N +       + +     +
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-----LEAFG---T 593

Query: 105 FCSMRLLDFSYNDFSSQVPPRLG-NCSRLKSFQAGYSNLLRSLPDDIYAA--ASLEEPSL 161
              +  L   YN     +P        +++     + N L+ +P+   A     +     
Sbjct: 594 NVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDF 651

Query: 162 HFNKLSG-----FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS- 215
            +NK+         S D     +   + L   E+           + +  ++L  N ++ 
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 216 ------GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG---- 265
                      +  N   L T++L  N        +  + L  L  +D+  N F+     
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ 771

Query: 266 -SFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATP 324
                 L +  +        N++  Q P  I          C +L  L +  N + +   
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGI--------TTCPSLIQLQIGSNDIRKVDE 823

Query: 325 NYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP 384
                        L  + +A           +    +  + +L  ++           + 
Sbjct: 824 K--------LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (438), Expect = 1e-46
 Identities = 81/487 (16%), Positives = 148/487 (30%), Gaps = 82/487 (16%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
            +    + ++ L++  N +   L       L +L++++L +N LS               
Sbjct: 43  ANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT---- 97

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164
             ++  L    N               L +    ++ L  +         +L+E  L  N
Sbjct: 98  --NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 165 KLSGFISNDI--INLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM 222
           K+    S ++     +SL  LEL S ++    P     +  L  L L    L  SL   +
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 223 ---MNCTNLKTLNLMGNLFAGNLSAYNFSVL--SQLETIDLYINMFTGSFLLTLTSCRLL 277
              +  T+++ L+L  +  +   S   F  L  + L  +DL  N        +      L
Sbjct: 216 CLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

Query: 278 TALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQN 337
               L  N ++      +         G  N+  L L                     ++
Sbjct: 275 EYFFLEYNNIQHLFSHSL--------HGLFNVRYLNLK--------------------RS 306

Query: 338 LRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397
               S++   L          L  LE L +  N I G     F  L +L Y +LS +  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 398 GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQY-----NRIFGLRPTIF-- 450
                                     L    F +   +         N+I  +    F  
Sbjct: 367 LR-----------------------TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 451 --------LANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSK 501
                   L  N +   +  +    L+ +  + L  N +     N  + +  L+RL L +
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 502 NHLSENN 508
             L   +
Sbjct: 464 VALKNVD 470

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  171 bits (435), Expect = 4e-46
 Identities = 79/476 (16%), Positives = 147/476 (30%), Gaps = 84/476 (17%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTL--LEIIDLSYNSLSGELTGLIPSLAWNH 103
               +  +  L L++  +   L       L    +  + LS +     L+    +     
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ----LSTTSNTTFLGL 245

Query: 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
            + ++ +LD SYN+ +           +L+ F                         L +
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF------------------------FLEY 281

Query: 164 NKLSGFISNDIINLTSLLVLELYSKELIGSI---------PRDIGKLTNLKYLLLYRNNL 214
           N +    S+ +  L ++  L L       SI               L  L++L +  N++
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 215 SGSLPSSMMNCTNLKTLNLMGNLF-AGNLSAYNFSVL--SQLETIDLYINMFTGSFLLTL 271
            G   +      NLK L+L  +      L+   F  L  S L  ++L  N  +       
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 272 TSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKI 331
           +    L  L L  N++  ++  +  +       G +N+  ++L+ N   + T N      
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWR-------GLENIFEIYLSYNKYLQLTRN-----S 449

Query: 332 SDGFQNLRAVSLAGCQLTG--QVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYF 389
                +L+ + L    L      P     L  L +L LS N I          L  L   
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 390 ALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTI 449
            L  NN++  +           ++                                   +
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLH----------------------------IL 541

Query: 450 FLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505
            L +N            L  L ++DLG NN      +  +    L+ L+L KN ++
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  163 bits (415), Expect = 2e-43
 Identities = 92/488 (18%), Positives = 160/488 (32%), Gaps = 98/488 (20%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTL--LEIIDLSYNSLSGELTGLIPSLA 100
            L +   L ++  L LS+N +   L            L+ ++LS N +     G      
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCF---- 191

Query: 101 WNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPS 160
             H+   +  L  +       +  +L       S        +R+L             S
Sbjct: 192 --HAIGRLFGLFLNNVQLGPSLTEKLCLELANTS--------IRNL-------------S 228

Query: 161 LHFNKLSGFISNDIINL--TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSL 218
           L  ++LS   +   + L  T+L +L+L    L          L  L+Y  L  NN+    
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

Query: 219 PSSMMNCTNLKTLNLMGNLFAGNLS--------AYNFSVLSQLETIDLYINMFTGSFLLT 270
             S+    N++ LNL  +    ++S         ++F  L  LE +++  N   G     
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

Query: 271 LTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNK 330
            T    L  L L+ +         +  L +   +   +                      
Sbjct: 349 FTGLINLKYLSLSNSFT------SLRTLTNETFVSLAH---------------------- 380

Query: 331 ISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW-FGNLPSLFYF 389
                  L  ++L   +++       S L  LEVL L  N+I   + G  +  L ++F  
Sbjct: 381 -----SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 390 ALSQNNISGEFPK---ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLR 446
            LS N            +  LQ L++ +          P    P +N           L 
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV-DSSPSPFQPLRN-----------LT 483

Query: 447 PTIFLANNSLSGRIPAETGQLKFLNVLDLGNNN--------FAGSIPNQISQLTILERLD 498
             + L+NN+++         L+ L +LDL +NN          G     +  L+ L  L+
Sbjct: 484 -ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 499 LSKNHLSE 506
           L  N   E
Sbjct: 543 LESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  152 bits (385), Expect = 2e-39
 Identities = 87/470 (18%), Positives = 142/470 (30%), Gaps = 86/470 (18%)

Query: 78  LEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQA 137
            E+ D S+  L+      +P         ++ +L+ ++N             S+L S   
Sbjct: 6   HEVADCSHLKLTQ-----VPD----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV 56

Query: 138 GYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRD 197
           G++ + +  P+       L+  +L  N+LS          T+L  L L S  +       
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 198 IGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG-NLSAYNFSVLSQLETI 256
             K  NL  L L  N LS +   + +   NL+ L L  N          +    S L+ +
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 257 DLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM 316
           +L  N           +   L  L L   QL   +  ++    +                
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT-------------- 222

Query: 317 NFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS--KLTKLEVLLLSGNQITG 374
                               ++R +SL+  QL+          K T L +L LS N +  
Sbjct: 223 --------------------SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 375 SIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNS 434
                F  LP L YF L  NNI   F   L  L  +                 L  +   
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY-------------LNLKRSFTK 309

Query: 435 TSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTIL 494
            S     +  +    F                LK L  L++ +N+  G   N  + L  L
Sbjct: 310 QSISLASLPKIDDFSF--------------QWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 495 ERLDLSKNHLSENNLQGPIPSGG-------------QLHTFPPSSFEGNP 531
           + L LS +  S   L                     ++      +F    
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.1 bits (232), Expect = 4e-20
 Identities = 44/261 (16%), Positives = 75/261 (28%), Gaps = 48/261 (18%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
           +   L H+  L+L  N +   L    +  L  +  I LSYN            +      
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP----- 454

Query: 106 CSMRLLDFSYNDFSS--QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
            S++ L        +    P        L                            L  
Sbjct: 455 -SLQRLMLRRVALKNVDSSPSPFQPLRNLTIL------------------------DLSN 489

Query: 164 NKLSGFISNDIINLTSLLVLELYS--------KELIGSIPRDIGKLTNLKYLLLYRNNLS 215
           N ++    + +  L  L +L+L              G     +  L++L  L L  N   
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 216 GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG----SFLLTL 271
                   +   LK ++L  N     L A  F+    L++++L  N+ T      F    
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 272 TSCRLLTALRLACNQLEGQIP 292
            +   LT L +  N  +    
Sbjct: 609 RN---LTELDMRFNPFDCTCE 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  171 bits (436), Expect = 2e-46
 Identities = 60/472 (12%), Positives = 131/472 (27%), Gaps = 56/472 (11%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
           S+ +   ++ L+L      G +P ++   LT LE++ L  +          P     +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANM- 133

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
            S          +                                     L +  ++ + 
Sbjct: 134 -SDEQKQKMRMHYQKTFVDYDPREDFS----------------------DLIKDCINSDP 170

Query: 166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNC 225
               I            +   S  +   + + + +LT L+   +  +             
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229

Query: 226 TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285
            N +                 +  L  L  +++Y           L +   +  + +ACN
Sbjct: 230 ENSEYAQQYKTEDLK------WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 286 QLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG 345
           +       +            + + ++++  N +           +    + L  +    
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS---LQ-KMKKLGMLECLY 339

Query: 346 CQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG----EFP 401
            QL G++P       KL  L L+ NQIT     + G    +   + + N +         
Sbjct: 340 NQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 402 KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIP 461
           K +S +  +    N+           L P      +       +  +I L+NN +S    
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN-------VS-SINLSNNQISKFPK 450

Query: 462 AETGQLKFLNVLDLGNNNFAG-------SIPNQISQLTILERLDLSKNHLSE 506
                   L+ ++L  N                     +L  +DL  N L++
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  159 bits (403), Expect = 4e-42
 Identities = 69/484 (14%), Positives = 141/484 (29%), Gaps = 53/484 (10%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
            S       + +    N++   +   +   LT L    +  +             AW   
Sbjct: 177 KSSRITLKDTQIGQLSNNITF-VS-KAVMRLTKLRQFYMGNSPF----VAENICEAWE-- 228

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164
                  +  Y         +  N   L   +      L  LP  + A   ++  ++  N
Sbjct: 229 -----NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 165 KLSGFISN--------DIINLTSLLVLELYSKELI-GSIPRDIGKLTNLKYLLLYRNNLS 215
           +               D      + ++ +    L    +   + K+  L  L    N L 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 216 GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG-SFLLTLTSC 274
           G LP+   +   L +LNL  N     + A       Q+E +    N       +    S 
Sbjct: 344 GKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

Query: 275 RLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG 334
            +++A+  + N++          L         N++ + L+ N +++         +   
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPF-KGINVSSINLSNNQISKFPKE-----LFST 455

Query: 335 FQNLRAVSLAGCQLTG-------QVPLWLSKLTKLEVLLLSGNQITGSIPGW-FGNLPSL 386
              L +++L G  LT                   L  + L  N++T     +    LP L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 387 FYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH--QYNRIFG 444
               LS N+ S  FP +      L     +  R+          N+              
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD-------AQGNRTLREWPEGITLCPS 567

Query: 445 LRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHL 504
           L   + + +N +   +  +      ++VLD+ +N       + +          L  +  
Sbjct: 568 LT-QLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 505 SENN 508
            +  
Sbjct: 624 QDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  148 bits (375), Expect = 3e-38
 Identities = 67/425 (15%), Positives = 132/425 (31%), Gaps = 53/425 (12%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG--ELTGLIPSLAWN 102
               NL  ++ + + +      LP      L  +++I+++ N      +L     +LA  
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 103 HSFCSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSL 161
                ++++   YN+  +  V   L    +L   +  Y N L        +   L   +L
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY-NQLEGKLPAFGSEIKLASLNL 360

Query: 162 HFNKLSGFISNDIINLTSLLVLELYSKELIGSIPR--DIGKLTNLKYLLLYRNNLSG--- 216
            +N+++   +N       +  L     +L   IP   D   ++ +  +    N +     
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 217 ----SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLT 272
                L  +     N+ ++NL  N  +       FS  S L +I+L  NM T        
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKEL-FSTGSPLSSINLMGNMLTE------- 471

Query: 273 SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKIS 332
                             IP   +K ++        L  + L  N + + + ++      
Sbjct: 472 ------------------IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT-- 511

Query: 333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVL------LLSGNQITGSIPGWFGNLPSL 386
                L  + L+    +   P      + L+           GN+     P      PSL
Sbjct: 512 --LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 387 FYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLR 446
               +  N+I     K    +  L I+ N             +         Y++   +R
Sbjct: 569 TQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLS-YVCPYIEAGMYMLFYDKTQDIR 627

Query: 447 PTIFL 451
               L
Sbjct: 628 GCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (338), Expect = 2e-33
 Identities = 54/387 (13%), Positives = 112/387 (28%), Gaps = 71/387 (18%)

Query: 44  LPSIGNLTHISHLNLSHNH-VHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
           L        I  + + +N+    P+   S   +  L +++  YN     L G +P+    
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVE-TSLQKMKKLGMLECLYNQ----LEGKLPAFG-- 350

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA--ASLEEPS 160
            S   +  L+ +YN  +       G   ++++    + N L+ +P+   A   + +    
Sbjct: 351 -SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAID 408

Query: 161 LHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS 220
             +N++                           +     K  N+  + L  N +S     
Sbjct: 409 FSYNEIGSVDGK-----------------NFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 221 SMMNCTNLKTLNLMGNLF------AGNLSAYNFSVLSQLETIDLYINMFTGSFL-LTLTS 273
                + L ++NLMGN+       +      NF     L +IDL  N  T        T+
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 274 CRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD 333
              L  + L+ N      P + +            L    +                   
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNS--------STLKGFGIRNQR--------------- 547

Query: 334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQ 393
                      G +   + P  ++    L  L +  N I   +       P++    +  
Sbjct: 548 --------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKD 596

Query: 394 NNISGEFPKELSRLQPLVIEQNKFNRN 420
           N         +       +    +++ 
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  122 bits (309), Expect = 9e-30
 Identities = 54/416 (12%), Positives = 118/416 (28%), Gaps = 85/416 (20%)

Query: 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG----SIPRDIGKLTNLKYLLLY 210
            +   SL     SG + + I  LT L VL L S           P+ I    + +     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 211 RNNLSGSLPSSMM--NCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFL 268
           R +   +        + ++L    +  +    ++   +     +   I    N  T    
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI-TLKDTQIGQLSNNIT-FVS 199

Query: 269 LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQ 328
             +     L    +  +    +   E  + ++      +      L  +           
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY--AQQYKTEDLKWD----------- 246

Query: 329 NKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQIT--------GSIPGWF 380
                  ++L  V +  C    ++P +L  L +++++ ++ N+                 
Sbjct: 247 -----NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 381 GNLPSLFYFALSQNNI-SGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQY 439
                +    +  NN+ +      L +++ L +                          Y
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM-------------LEC---------LY 339

Query: 440 NRIFGLRPTIF---------LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPN--QI 488
           N++ G  P            LA N ++       G  + +  L   +N     IPN    
Sbjct: 340 NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDA 398

Query: 489 SQLTILERLDLSKNHLS--ENNLQGPIPSGG--------------QLHTFPPSSFE 528
             ++++  +D S N +   +     P+                  Q+  FP   F 
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  114 bits (288), Expect = 4e-27
 Identities = 52/344 (15%), Positives = 99/344 (28%), Gaps = 79/344 (22%)

Query: 44  LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNH 103
           LP+ G+   ++ LNL++N +   +P N   F   +E +  ++N L       IP++    
Sbjct: 346 LPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAK 399

Query: 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
           S   M  +DFSYN+  S                         L    +   ++   +L  
Sbjct: 400 SVSVMSAIDFSYNEIGSVDG-----------------KNFDPLDPTPFKGINVSSINLSN 442

Query: 164 NKLSGFISNDIINLTSLLVLELYS-------KELIGSIPRDIGKLTNLKYLLLYRNNLSG 216
           N++S F        + L  + L         K  +     +      L  + L  N L+ 
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 217 SLPS-SMMNCTNLKTLNLMGNLF------AGNLSAYNFSVLSQLETIDLYINMFTGSFLL 269
                       L  ++L  N F        N S             D   N     +  
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS--TLKGFGIRNQRDAQGNRTLREWPE 560

Query: 270 TLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQN 329
            +T C  LT L++  N +   +  +I                                  
Sbjct: 561 GITLCPSLTQLQIGSNDIRK-VNEKI---------------------------------- 585

Query: 330 KISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQIT 373
                  N+  + +           ++    +  + +L  ++  
Sbjct: 586 -----TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 8e-20
 Identities = 32/286 (11%), Positives = 75/286 (26%), Gaps = 47/286 (16%)

Query: 255 TIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL------------- 301
             +  ++M+     ++L S   +T L L      G++P  I +L  L             
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 302 ----ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS 357
                  G                    +      + F +L    +        +     
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 358 KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKF 417
              K   +    N IT  +      L  L  F +  +    E   E    +    E  + 
Sbjct: 181 ITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS--EYAQQ 237

Query: 418 NRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGN 477
            + +                +++ +  L   + + N     ++P     L  + ++++  
Sbjct: 238 YKTEDL--------------KWDNLKDLT-DVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 478 NNF--------AGSIPNQISQLTILERLDLSKNHLSENNLQGPIPS 515
           N                       ++ + +  N+L       P+ +
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT----FPVET 324

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  160 bits (406), Expect = 1e-42
 Identities = 91/497 (18%), Positives = 155/497 (31%), Gaps = 71/497 (14%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIP------- 97
            +  +L+H+S L L+ N +   L + +F  L+ L+ +     +L+      I        
Sbjct: 70  GAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 98  -SLAWNH--------SFCSM---RLLDFSYNDFSSQVPPRLGNCSRLKSFQAG---YSNL 142
            ++A N          F ++     LD S N   S     L    ++           N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 143 LRSLPDDIYAAASLEEPSLHFNKLSGFISNDII-NLTSLLVLELYSKELIGSIPR---DI 198
           +  +    +    L + +L  N  S  +    I  L  L V  L   E          D 
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 199 GKLTNLKYLLLYRNNLS------GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
             L  L  L +    L+        +       TN+ + +L+                  
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 253 LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312
           LE ++     F    L +L        L    N+                 +   +L  L
Sbjct: 309 LELVNCKFGQFPTLKLKSLKR------LTFTSNKGGNAFS----------EVDLPSLEFL 352

Query: 313 FLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQI 372
            L+ N ++        +    G  +L+ + L+   +   +      L +LE L    + +
Sbjct: 353 DLSRNGLSFKGCCSQSDF---GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 373 TGSIP-GWFGNLPSLFYFALSQNNISGEFPKE---LSRLQPLVIEQNKFNRNKPDLPFFL 428
                   F +L +L Y  +S  +    F      LS L+ L +  N F  N     F  
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 429 FPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQI 488
             N             L   + L+   L    P     L  L VL++ +NNF        
Sbjct: 469 LRN-------------LT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 489 SQLTILERLDLSKNHLS 505
             L  L+ LD S NH+ 
Sbjct: 515 KCLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  149 bits (378), Expect = 8e-39
 Identities = 77/488 (15%), Positives = 150/488 (30%), Gaps = 58/488 (11%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
               +L+LS N +   L   SF     L+++DLS   +     G   SL+       +  
Sbjct: 28  FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS------HLST 80

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
           L  + N   S         S L+                                L+   
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKL------------------------VAVETNLASLE 116

Query: 171 SNDIINLTSLLVLELYSKELIG-SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK 229
           +  I +L +L  L +    +    +P     LTNL++L L  N +     + +     + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 230 TLNLMGNLFAGNLSAYNFSVLS--QLETIDLYINMFTGSFL-LTLTSCRLLTALRLACNQ 286
            LNL  +L    ++          +L  + L  N  + + +   +     L   RL   +
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 287 LEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346
              +    + K     L G  NL +    + +++    +     + +   N+ + SL   
Sbjct: 237 FRNEGN--LEKFDKSALEGLCNLTIEEFRLAYLDYYLDD--IIDLFNCLTNVSSFSLVSV 292

Query: 347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSR 406
            +        S     + L L   +          +L  L + +    N   E   +L  
Sbjct: 293 TIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPS 348

Query: 407 LQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH---QYNRIFGLRPTIF---------LANN 454
           L+ L + +N  +               S  +    +N +  +                ++
Sbjct: 349 LEFLDLSRNGLSFK--GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

Query: 455 SLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPI 513
           +L           L+ L  LD+ + +   +     + L+ LE L ++ N   EN L    
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 514 PSGGQLHT 521
                L  
Sbjct: 467 TELRNLTF 474

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (355), Expect = 8e-36
 Identities = 96/474 (20%), Positives = 152/474 (32%), Gaps = 62/474 (13%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
            IG+L  +  LN++HN +        F  LT LE +DLS N +       +  L  +   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL--HQMP 176

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSL--- 161
                LD S N  +  + P      RL       +    ++        A LE   L   
Sbjct: 177 LLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 162 ---HFNKLSGFISNDIINLTSLLVLEL---YSKELIGSIPRDIGKLTNLKYLLLYRNNLS 215
              +   L  F  + +  L +L + E    Y    +  I      LTN+    L    + 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 216 GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCR 275
                S       + L L+   F        F  L       L      G    +     
Sbjct: 296 RVKDFS--YNFGWQHLELVNCKFGQ------FPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347

Query: 276 LLTALRLACNQL--EGQIPPEIIKLKSLI---------------LMGCKNLNVLFLTMNF 318
            L  L L+ N L  +G          SL                 +G + L  L    + 
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 319 MNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSI-P 377
           + + +       +    +NL  + ++            + L+ LEVL ++GN    +  P
Sbjct: 408 LKQMSEFS----VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 378 GWFGNLPSLFYFALSQNNISGEFPKE---LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNS 434
             F  L +L +  LSQ  +    P     LS LQ L +  N F      L  F +   NS
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF----SLDTFPYKCLNS 519

Query: 435 TSHQYNRIFGLRPTIFLANNSLSGRIPAETGQL-KFLNVLDLGNNNFAGSIPNQ 487
                     L+  +  + N +      E       L  L+L  N+FA +  +Q
Sbjct: 520 ----------LQ-VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (351), Expect = 3e-35
 Identities = 74/417 (17%), Positives = 117/417 (28%), Gaps = 63/417 (15%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE--LTGLIPSLAWN 102
           P       +  L L +N     +       L  LE+  L       E  L     S    
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 103 HSFCSMRLLDFSYNDFS-SQVPPRLGNCSRLKSFQAGYSNLLRSLP-------------- 147
               ++     +Y D+    +       + + SF      + R                 
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313

Query: 148 ---DDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKEL--IGSIPRDIGKLT 202
                           L F    G  +   ++L SL  L+L    L   G   +     T
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 203 NLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM 262
           +LKYL L  N +   + S+ +    L+ L+   +          F  L  L  +D+    
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 263 FTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEA 322
              +F         L  L++A N  +    P+I           +NL  L          
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-------ELRNLTFL---------- 475

Query: 323 TPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGN 382
                               L+ CQL    P   + L+ L+VL +S N         +  
Sbjct: 476 -------------------DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 383 LPSLFYFALSQNNISGEFPKELSRLQP----LVIEQNKFNRNKPDLPFFLFPNQNST 435
           L SL     S N+I     +EL         L + QN F        F  +      
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  135 bits (342), Expect = 4e-34
 Identities = 80/486 (16%), Positives = 132/486 (27%), Gaps = 81/486 (16%)

Query: 80  IIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGY 139
           + +++Y  +      +  +L       S + LD S+N           +   L+      
Sbjct: 7   VPNITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVL---- 57

Query: 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIG 199
                                L   ++         +L+ L  L L    +         
Sbjct: 58  --------------------DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 200 KLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLY 259
            L++L+ L+    NL+      + +   LK LN+  NL         FS L+ LE +DL 
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 260 INMFTGSFLLTLTSCRLLTA----LRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLT 315
            N     +   L     +      L L+ N +   I P   K           L+ L L 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKE--------IRLHKLTLR 208

Query: 316 MNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLW------LSKLTKLEVLLLSG 369
            NF +             G   L    L   +   +  L       L  L  L +     
Sbjct: 209 NNFDSLNVM----KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 370 NQITGS---IPGWFGNLPSLFYFALSQNNISGEFP-KELSRLQPLVIEQNKFNRNKPDLP 425
             +      I   F  L ++  F+L    I            Q L +   KF +     P
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ----FP 320

Query: 426 FFLFPNQNSTSHQYNRIFGLRPTIFLAN----------NSLSGRIPAETGQLKFLNVLDL 475
                +    +   N+       + L +           S  G           L  LDL
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 476 GNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIP----------SGGQLHTFPPS 525
             N     + +    L  LE LD   ++L + +                S          
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 526 SFEGNP 531
            F G  
Sbjct: 440 IFNGLS 445

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (282), Expect = 2e-26
 Identities = 55/366 (15%), Positives = 103/366 (28%), Gaps = 58/366 (15%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
               LT++S  +L    +     +  F +    + ++L             P+L      
Sbjct: 277 LFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQ-----FPTL----KL 324

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRS--LPDDIYAAASLEEPSLHF 163
            S++ L F+ N   +       +   L+      + L          +   SL+   L F
Sbjct: 325 KSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 164 NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSM 222
           N +   +S++ + L  L  L+     L       +   L NL YL +   +   +     
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL 282
              ++L+ L + GN F  N     F+ L  L  +DL              S   L  L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 283 ACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVS 342
           + N                      +L VL  ++N                         
Sbjct: 502 SHNNFFSLDT--------FPYKCLNSLQVLDYSLN------------------------- 528

Query: 343 LAGCQLTGQVPLWLSKL-TKLEVLLLSGNQITGSIP-GWF-GNLPSLFYFALSQNNISGE 399
                +       L    + L  L L+ N    +     F   +       +    +   
Sbjct: 529 ----HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584

Query: 400 FPKELS 405
            P +  
Sbjct: 585 TPSDKQ 590

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (398), Expect = 2e-41
 Identities = 87/472 (18%), Positives = 161/472 (34%), Gaps = 47/472 (9%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
            + N   +  L L  NH+   + +        L+++D   N++       + SL      
Sbjct: 124 PLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL----QQ 178

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA--SLEEPSLHF 163
            +   L+ + ND +  + P   + +  +S   G +  L  +   +  +   SL   +   
Sbjct: 179 ATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 164 NKLSGFISNDIINL--TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSS 221
                        L   S+  + L                + L+ L L   +LS  LPS 
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296

Query: 222 MMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLL-TLTSCRLLTAL 280
           ++  + LK L L  N F   L   + S    L  + +  N          L +   L  L
Sbjct: 297 LVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
            L+ + +E           +L L    +L  L L+ N                    L  
Sbjct: 356 DLSHDDIET------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-----AFKECPQLEL 404

Query: 341 VSLAGCQLTGQVPL-WLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGE 399
           + LA  +L  +        L  L+VL LS + +  S    F  LP+L +  L  N+    
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 400 FP------KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLAN 453
                   + L RL+ LV+     +     +    F +             +   + L++
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLS----SIDQHAFTSLKM----------MN-HVDLSH 509

Query: 454 NSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505
           N L+         LK +  L+L +N+ +  +P+ +  L+    ++L +N L 
Sbjct: 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  143 bits (363), Expect = 7e-37
 Identities = 82/485 (16%), Positives = 136/485 (28%), Gaps = 54/485 (11%)

Query: 50  LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMR 109
                 L  S N +   +   +F  L  L  +DL+   +         S         + 
Sbjct: 32  PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH------RLD 84

Query: 110 LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF 169
            L  + N         L     LK      + +       ++   +LE   L  N +S  
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 170 ISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLY-RNNLSGSLPSSMMNCTNL 228
                     L VL+  +  +      D+  L     L L    N    +     +    
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 229 KTLNLMGN----LFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLAC 284
           ++LN  G     +    L       L      D+     + +    L    + + + L  
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES-INLQK 263

Query: 285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA---V 341
           +     I                 L  L LT   ++E         +  G   L     +
Sbjct: 264 HYFFN-ISSNTFH-------CFSGLQELDLTATHLSE---------LPSGLVGLSTLKKL 306

Query: 342 SLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSI-PGWFGNLPSLFYFALSQNNISGEF 400
            L+  +      +  S    L  L + GN     +  G   NL +L    LS ++I    
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 401 PKE-----LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRP-------- 447
                   LS LQ L +  N+    K +      P        + R+             
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 448 ---TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSI---PNQISQLTILERLDLSK 501
               + L+++ L          L  L  L+L  N+F        N +  L  LE L LS 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 502 NHLSE 506
             LS 
Sbjct: 486 CDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  131 bits (332), Expect = 9e-33
 Identities = 59/381 (15%), Positives = 110/381 (28%), Gaps = 42/381 (11%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
           P   +      LN         +        T+  +   ++  +      + P++     
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLL-VIFKGLKNSTIQSLWLGTFEDMD--DEDISPAVFEGLC 252

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164
             S+  ++   + F +         S L+         L  LP  +   ++L++  L  N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSAN 311

Query: 165 KLSGFISNDIINLTSLLVLELYSKELIGSIPRD--------------------------- 197
           K          N  SL  L +        +                              
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 198 IGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID 257
           +  L++L+ L L  N        +   C  L+ L+L         +   F  L  L+ ++
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 258 LYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317
           L  ++   S          L  L L  N             K+  L     L +L L+  
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPK-----GNIQKTNSLQTLGRLEILVLSFC 486

Query: 318 FMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP 377
            ++    +          + +  V L+  +LT      LS L  +  L L+ N I+  +P
Sbjct: 487 DLSSIDQH-----AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540

Query: 378 GWFGNLPSLFYFALSQNNISG 398
                L       L QN +  
Sbjct: 541 SLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.7 bits (197), Expect = 8e-16
 Identities = 48/236 (20%), Positives = 83/236 (35%), Gaps = 13/236 (5%)

Query: 36  NKLVQRYHLPSIGNLTHISHLNLSHNHVHG-PLPINSFHFLTLLEIIDLSYNSLSGELTG 94
           N          + NL ++  L+LSH+ +            L+ L+ ++LSYN      T 
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 95  LIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR-LGNCSRLKSFQAGYSNLLRSLPDDIYAA 153
                        + LLD ++     +       N   LK     +S L  S        
Sbjct: 395 AFKECP------QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 154 ASLEEPSLHFNKLSGFI---SNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLY 210
            +L+  +L  N         +N +  L  L +L L   +L          L  + ++ L 
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 211 RNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS 266
            N L+ S   ++ +   +  LNL  N  +  +      +LSQ  TI+L  N    +
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 39/189 (20%)

Query: 334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQ 393
              NL  + L  CQ+            +L+ L+L+ N +            +L +    Q
Sbjct: 55  RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 394 NNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLAN 453
             IS      L   + L                                     +++L +
Sbjct: 115 TGISSIDFIPLHNQKTLE------------------------------------SLYLGS 138

Query: 454 NSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPI 513
           N +S     +    + L VLD  NN         +S L     L L   +L+ N++ G  
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL---NLNGNDIAGIE 195

Query: 514 PSGGQLHTF 522
           P       F
Sbjct: 196 PGAFDSAVF 204

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (355), Expect = 8e-36
 Identities = 85/486 (17%), Positives = 149/486 (30%), Gaps = 50/486 (10%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
           S  N + +  L+LS   +   +   ++H L  L  + L+ N +     G    L      
Sbjct: 51  SFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT----- 104

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA--ASLEEPSLHF 163
            S+  L       +S     +G    LK     + N + S     Y +   +L    L +
Sbjct: 105 -SLENLVAVETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 164 NKLSGFISNDIINLTSLLVLELY---SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS 220
           N +     ND+  L     + L    S   I  I     +   L  L L  N  S ++  
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 221 -SMMNCTNLKTLNLMGNLFAGN-----LSAYNFSVLSQLETIDLYI--NMFTGSFLLTLT 272
             + N   L    L+   F                L  +   +  +         ++   
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 273 SCRLLTALRLACNQLEGQIPPEI--IKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNK 330
               ++A+ LA   ++  +       K +SL ++ C+      L + F+   T   ++  
Sbjct: 283 CLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS 341

Query: 331 ISDGFQNLRAV---SLAGCQLT--GQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPS 385
           IS     L ++    L+   L+  G           L  L LS N     +   F  L  
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE 400

Query: 386 LFYFALSQNNISGEFP----KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR 441
           L +     + +           L +L  L I       +   + F    +          
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLTS---------- 449

Query: 442 IFGLRPTIFLANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLS 500
              L  T+ +A NS      +        L  LDL               L  L+ L++S
Sbjct: 450 ---LN-TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 501 KNHLSE 506
            N+L  
Sbjct: 506 HNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (354), Expect = 1e-35
 Identities = 81/474 (17%), Positives = 152/474 (32%), Gaps = 52/474 (10%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
            IG L  +  LN++HN +H       F  LT L  +DLSYN +       +  L    + 
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL--RENP 180

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFN 164
                LD S N     +  +     +L       +    ++        A L    L   
Sbjct: 181 QVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 165 KLSGFISNDIINLT--------SLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSG 216
           +     + +I   +        ++    L               L N+  + L   ++  
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 217 SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRL 276
                +      ++L+++       L  +    L  L+++ L +N  + SF     +   
Sbjct: 300 --LEDVPKHFKWQSLSIIRC----QLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALPS 351

Query: 277 LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQ 336
           L+ L L+ N L            S   +G  +L  L L+ N     + N+       G +
Sbjct: 352 LSYLDLSRNALSF------SGCCSYSDLGTNSLRHLDLSFNGAIIMSANF------MGLE 399

Query: 337 NLRAVSLAGCQLTGQVPLW-LSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395
            L+ +      L           L KL  L +S         G F  L SL    ++ N+
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 396 ISGEFPKE----LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFL 451
                        + L  L + + +       + + +F   +           L+  + +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLE----QISWGVFDTLHR----------LQ-LLNM 504

Query: 452 ANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505
           ++N+L     +   QL  L+ LD   N    S          L   +L+ N ++
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  129 bits (327), Expect = 4e-32
 Identities = 72/382 (18%), Positives = 122/382 (31%), Gaps = 29/382 (7%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE--LTGLIPSLAWN 102
                   +  L L  N     +       L  L +  L       E  L    PS+   
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
               ++     +Y +  S    +    + + +        ++ L D        +  S+ 
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG-VSIKYLEDVPKHF-KWQSLSII 315

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS--GSLPS 220
             +L  F +    +L  L  L L   +   SI      L +L YL L RN LS  G    
Sbjct: 316 RCQLKQFPTL---DLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSY 370

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG-SFLLTLTSCRLLTA 279
           S +   +L+ L+L  N     + + NF  L +L+ +D   +     +      S   L  
Sbjct: 371 SDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 280 LRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLR 339
           L ++    +             I +G  +LN L +  N   + T +     +     NL 
Sbjct: 429 LDISYTNTKIDFDG--------IFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLT 476

Query: 340 AVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG- 398
            + L+ CQL          L +L++L +S N +       +  L SL     S N I   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 399 --EFPKELSRLQPLVIEQNKFN 418
                     L    +  N   
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  118 bits (299), Expect = 2e-28
 Identities = 86/512 (16%), Positives = 163/512 (31%), Gaps = 49/512 (9%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
           P I  + +I         +   +P +       +   DLS+N L    +    + +    
Sbjct: 6   PCIEVVPNI-TYQCMDQKLSK-VPDDIPSSTKNI---DLSFNPLKILKSYSFSNFS---- 56

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164
              ++ LD S  +  +           L +     + +    P       SLE       
Sbjct: 57  --ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 165 KLSGFISNDIINLTSLLVLELYSKELIG-SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMM 223
           KL+   S  I  L +L  L +    +    +P     LTNL ++ L  N +     + + 
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 224 NCTNLKTLNLMGNLFAGNLSAYNFSVLS--QLETIDLYINMFTGSFL-LTLTSCRLLTAL 280
                  +NL  ++    +           +L  + L  N  + + +   L +   L   
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
           RL   + + +   EI +    I+ G  ++ +    + + N+ + +  +        N+ A
Sbjct: 235 RLILGEFKDERNLEIFEPS--IMEGLCDVTIDEFRLTYTNDFSDDIVKFH---CLANVSA 289

Query: 341 VSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEF 400
           +SLAG  +       + K  K + L +   Q+    P    +LP L    L+ N  S  F
Sbjct: 290 MSLAGVSIKYLED--VPKHFKWQSLSIIRCQLK-QFP--TLDLPFLKSLTLTMNKGSISF 344

Query: 401 PK-ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTS--HQYNRIFGLRP---------T 448
            K  L  L  L + +N  +       +      +       +N    +            
Sbjct: 345 KKVALPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403

Query: 449 IFLANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSEN 507
           +   +++L           L+ L  LD+   N           LT L  L ++ N   +N
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 508 NLQGPIP----------SGGQLHTFPPSSFEG 529
            L               S  QL       F+ 
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  128 bits (323), Expect = 2e-31
 Identities = 90/520 (17%), Positives = 161/520 (30%), Gaps = 70/520 (13%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
            L  +  L L   +    +   +F  L  L I+DL  + +       +   A+   F  +
Sbjct: 46  FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-----LHPDAFQGLF-HL 99

Query: 109 RLLDFSYNDFSSQVPPR--LGNCSRLKSFQAGYSNLLRSLPDDIYAAA--SLEEPSLHFN 164
             L   +   S  V       N   L        N +RSL          SL+      N
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSN 158

Query: 165 KLSGFISNDIINLT--SLLVLELYSKELIGSIPRDIGKLTN-LKYLLLYRNNLSGSLPSS 221
           ++     +++  L   +L    L +  L   +  D GK  N  + ++L   ++SG+  + 
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

Query: 222 MMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRL--LTA 279
            +       ++           A++  +   +       +        T        +  
Sbjct: 219 DITGNFSNAIS--------KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 280 LRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLR 339
           L L+           +  L S +    K+L VL L  N +N+            G  NL+
Sbjct: 271 LDLSHGF--------VFSLNSRVFETLKDLKVLNLAYNKINKIADE-----AFYGLDNLQ 317

Query: 340 AVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGE 399
            ++L+   L          L K+  + L  N I       F  L  L    L  N ++  
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-- 375

Query: 400 FPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIF--------- 450
               +  +  + +  NK     P +        N      NR+  L    F         
Sbjct: 376 TIHFIPSIPDIFLSGNKL-VTLPKINLTA----NLIHLSENRLENLDILYFLLRVPHLQI 430

Query: 451 --LANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQI-----SQLTILERLDLSKN 502
             L  N  S     +T  +   L  L LG N    +   ++       L+ L+ L L+ N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 503 HLSE---------NNLQGPIPSGGQLHTFPPSSFEGNPEF 533
           +L+            L+G   +  +L     +    N E 
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI 530

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  119 bits (301), Expect = 1e-28
 Identities = 98/526 (18%), Positives = 171/526 (32%), Gaps = 69/526 (13%)

Query: 36  NKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTL--LEIIDLSYNSLSGELT 93
           N++   Y  PS G L  +  ++ S N +   +  +    L    L    L+ NSL   ++
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 94  GLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA 153
                         + +LD S N ++  +     N             + +S    +  A
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN------------AISKSQAFSLILA 239

Query: 154 ASLEEPSLHFNKLSGFISNDIINLTSLLVLELY-SKELIGSIPRDI-GKLTNLKYLLLYR 211
             +      F+ +     N    L    V  L  S   + S+   +   L +LK L L  
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 212 NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTL 271
           N ++     +     NL+ LNL  NL  G L + NF  L ++  IDL  N        T 
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 272 TSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKI 331
                L  L L  N L               +    ++  +FL+ N +           +
Sbjct: 359 KFLEKLQTLDLRDNALTT-------------IHFIPSIPDIFLSGNKLVT---------L 396

Query: 332 SDGFQNLRAVSLAGCQLTG-QVPLWLSKLTKLEVLLLSGNQITG-SIPGWFGNLPSLFYF 389
                    + L+  +L    +  +L ++  L++L+L+ N+ +  S        PSL   
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 390 ALSQNNISGEFP--------KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH---Q 438
            L +N +   +         + LS LQ L +  N  N     LP  +F +  +       
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS----LPPGVFSHLTALRGLSLN 512

Query: 439 YNRIFGLRPTIF--------LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQ-IS 489
            NR+  L             ++ N L    P        L+VLD+ +N F          
Sbjct: 513 SNRLTVLSHNDLPANLEILDISRNQLLAPNP---DVFVSLSVLDITHNKFICECELSTFI 569

Query: 490 QLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCS 535
                  + ++        +     SG  L +      +      S
Sbjct: 570 NWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKS 615

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (292), Expect = 2e-27
 Identities = 85/501 (16%), Positives = 157/501 (31%), Gaps = 75/501 (14%)

Query: 79  EIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAG 138
            I    + +L+ ++  ++ +            L  S+N   +          +L+  + G
Sbjct: 7   RIAFYRFCNLT-QVPQVLNTT---------ERLLLSFNYIRTVTASSFPFLEQLQLLELG 56

Query: 139 YSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSI--P 195
                 ++  + +    +L    L  +K+     +    L  L  L LY   L  ++   
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 196 RDIGKLTNLKYLLLYRNNLSG-SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ-- 252
                L  L  L L +N +    L  S     +LK+++   N     +  +    L    
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKT 175

Query: 253 LETIDLYINMFTGSFLLTLTSC------RLLTALRLACNQLEGQIPP----EIIKLKSLI 302
           L    L  N       +    C       +L  L ++ N     I       I K ++  
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 303 LMGCKNLNVLFLTMNFMNEATPNY--------------DQNKISD-------GFQNLRAV 341
           L+   ++       + + +   N                   +           ++L+ +
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 342 SLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS---G 398
           +LA  ++          L  L+VL LS N +       F  LP + Y  L +N+I+    
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

Query: 399 EFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIF------LA 452
           +  K L +LQ L +  N              P+        N++  L           L+
Sbjct: 356 QTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409

Query: 453 NNSLSG-RIPAETGQLKFLNVLDLGNNNFAGSIPNQI-SQLTILERLDLSKNHLSENNLQ 510
            N L    I     ++  L +L L  N F+    +Q  S+   LE+L L +N L      
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW-- 467

Query: 511 GPIPSGGQLHTFPPSSFEGNP 531
                           FEG  
Sbjct: 468 --------ETELCWDVFEGLS 480

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (256), Expect = 5e-23
 Identities = 79/424 (18%), Positives = 138/424 (32%), Gaps = 53/424 (12%)

Query: 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI- 198
              L  +P  +    + E   L FN +    ++    L  L +LEL S+    +I ++  
Sbjct: 13  FCNLTQVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGN-LFAGNLSAYNFSVLSQLETID 257
             L NL+ L L  + +    P +     +L  L L    L    L    F  L  L  +D
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 258 LYINMFTG-SFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM 316
           L  N         +      L ++  + NQ+        +    L  +  K L+   L  
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL------VCEHELEPLQGKTLSFFSLAA 183

Query: 317 N-FMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVP------------LWLSKLTKLE 363
           N   +  + ++ +         L  + ++G   T  +               L     + 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 364 VLLLSGNQITGSIPGWFGNLP--SLFYFALSQNNIS----GEFPKELSRLQPLVIEQNKF 417
                 + I       F  L   S+ +  LS   +       F   L  L+ L +  NK 
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVLNLAYNKI 302

Query: 418 NRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET-GQLKFLNVLDLG 476
           N     +    F   ++          L+  + L+ N L   + +     L  +  +DL 
Sbjct: 303 N----KIADEAFYGLDN----------LQ-VLNLSYNLLG-ELYSSNFYGLPKVAYIDLQ 346

Query: 477 NNNFAGSIPNQISQLTILERLDLSKNHLSE----NNLQGPIPSGGQLHTFPPSSFEGNPE 532
            N+ A         L  L+ LDL  N L+      ++     SG +L T P  +   N  
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI 406

Query: 533 FCSD 536
             S+
Sbjct: 407 HLSE 410

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 36/242 (14%), Positives = 80/242 (33%), Gaps = 15/242 (6%)

Query: 36  NKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGL 95
           N+L     L  +  + H+  L L+ N         +      LE + L  N L       
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470

Query: 96  IPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAAS 155
           +    +      +++L  ++N  +S  P    + + L+       N L  L  +    A+
Sbjct: 471 LCWDVFEG-LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS-NRLTVLSHNDL-PAN 527

Query: 156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS 215
           LE   +  N+L     +  ++L+    L++   + I            L   + + N+ +
Sbjct: 528 LEILDISRNQLLAPNPDVFVSLSV---LDITHNKFICEC--------ELSTFINWLNHTN 576

Query: 216 GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCR 275
            ++     +   +   +  G     +LS         L+++   + +     L       
Sbjct: 577 VTIAGPPADIYCVYPDSFSGVSLF-SLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTI 635

Query: 276 LL 277
           L 
Sbjct: 636 LT 637

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (306), Expect = 1e-30
 Identities = 67/380 (17%), Positives = 138/380 (36%), Gaps = 55/380 (14%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            +    +L       L    V   +       L  +  + ++   ++      I  +   
Sbjct: 14  QIFPDADLAEGIRAVLQKASVTDVVTQEE---LESITKLVVAGEKVAS-----IQGIE-- 63

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
               ++  L+ + N  +      L N  +L +     +N +  +   +    +L E  L+
Sbjct: 64  -YLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYI-GTNKITDIS-ALQNLTNLRELYLN 118

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM 222
            + +S      + NLT +  L L +   +  +   +  +T L YL +  + +     + +
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV--TPI 173

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL 282
            N T+L +L+L  N    ++S    + L+ L     Y+N  T   +  + +   L +L++
Sbjct: 174 ANLTDLYSLSLNYNQIE-DIS--PLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKI 228

Query: 283 ACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD-----GFQN 337
             N++    P          L     L  L +              N+ISD         
Sbjct: 229 GNNKITDLSP----------LANLSQLTWLEI------------GTNQISDINAVKDLTK 266

Query: 338 LRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397
           L+ +++   Q++      L+ L++L  L L+ NQ+        G L +L    LSQN+I+
Sbjct: 267 LKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 398 GEFP-KELSRLQPLVIEQNK 416
              P   LS++         
Sbjct: 325 DIRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (284), Expect = 1e-27
 Identities = 79/368 (21%), Positives = 133/368 (36%), Gaps = 57/368 (15%)

Query: 154 ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNN 213
           A      L    ++  ++     L S+  L +  ++ + SI   I  LTNL+YL L  N 
Sbjct: 22  AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-VASIQ-GIEYLTNLEYLNLNGNQ 77

Query: 214 LSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTS 273
           ++   P S  N   L  L +  N    ++SA     L+ L  + L  +  +   +  L +
Sbjct: 78  ITDISPLS--NLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISD--ISPLAN 130

Query: 274 CRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD 333
              + +L L  N     + P         L     LN L +             ++K+ D
Sbjct: 131 LTKMYSLNLGANHNLSDLSP---------LSNMTGLNYLTV------------TESKVKD 169

Query: 334 -----GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFY 388
                   +L ++SL   Q+    PL  + LT L       NQIT   P    N+  L  
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 389 FALSQNNISG-EFPKELSRLQPLVIEQNKFNRNKPDLPFF-LFPNQNSTSHQYNRIFGLR 446
             +  N I+       LS+L  L I  N+ +    D+            +   N+I  + 
Sbjct: 226 LKIGNNKITDLSPLANLSQLTWLEIGTNQIS----DINAVKDLTKLKMLNVGSNQISDIS 281

Query: 447 P--------TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLD 498
                    ++FL NN L        G L  L  L L  N+     P  ++ L+ ++  D
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339

Query: 499 LSKNHLSE 506
            +   + +
Sbjct: 340 FANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 53/185 (28%)

Query: 329 NKISD-----GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNL 383
             I+               L    +T  V     +L  +  L+++G ++  SI G    L
Sbjct: 10  APINQIFPDADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKVA-SIQG-IEYL 65

Query: 384 PSLFYFALSQNNISGEFP-KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRI 442
            +L Y  L+ N I+   P   L +L  L I  NK      D+                  
Sbjct: 66  TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT----DISAL--------------- 106

Query: 443 FGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN 502
                                   L  L  L L  +N +   P  ++ LT +  L+L  N
Sbjct: 107 ----------------------QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGAN 142

Query: 503 HLSEN 507
           H   +
Sbjct: 143 HNLSD 147

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (303), Expect = 3e-29
 Identities = 91/503 (18%), Positives = 170/503 (33%), Gaps = 68/503 (13%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            +PS G    +  L+LS N +   +          L+++ L  + ++      I   A+ 
Sbjct: 19  SIPS-GLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINT-----IEGDAF- 70

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
           +S  S+  LD S N               L S  +        L        SL+  +L 
Sbjct: 71  YSLGSLEHLDLSDN--------------HLSSLSSS---WFGPLS-------SLKYLNLM 106

Query: 163 FNKLSGFISNDII-NLTSLLVLELYSKELIGSIPR-DIGKLTNLKYLLLYRNNLSGSLPS 220
            N         +  NLT+L  L + + E    I R D   LT+L  L +   +L      
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280
           S+ +  ++  L L  +  A  L      +LS +  ++L            L    + + +
Sbjct: 167 SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225

Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
           +    +          +L  L+    +   V F           N  ++ +      +  
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 341 VSLA-----GCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395
           V++         L   +    S L K++ + +  +++      +  +L SL +  LS+N 
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345

Query: 396 ISGEFPKE------LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTI 449
           +  E+ K          LQ LV+ QN        +           +        L  ++
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLR----SMQKTGEILLTLKN--------LT-SL 392

Query: 450 FLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSE--- 506
            ++ N+    +P      + +  L+L +      +   I     LE LD+S N+L     
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFSL 448

Query: 507 --NNLQGPIPSGGQLHTFPPSSF 527
               LQ    S  +L T P +S 
Sbjct: 449 FLPRLQELYISRNKLKTLPDASL 471

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  101 bits (253), Expect = 8e-23
 Identities = 64/461 (13%), Positives = 133/461 (28%), Gaps = 48/461 (10%)

Query: 47  IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLS-YNSLSGELTGLIPSLAWNHSF 105
            G L+ + +LNL  N        + F  LT L+ + +    + S         L      
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT----- 148

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
            S+  L+       +     L +   +       S     L       +S+    L    
Sbjct: 149 -SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNC 225
           L+ F  + +        ++  +            +L  L   +L  + +         +C
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDC 261

Query: 226 TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285
           T     +   +     +S         +  + +             +    +  + +  +
Sbjct: 262 TLNGLGDFNPSES-DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 286 QLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG 345
           +        +  +        K+L  L L+ N M E       +     + +L+ + L+ 
Sbjct: 321 K--------VFLVPCSFSQHLKSLEFLDLSENLMVEEYLK--NSACKGAWPSLQTLVLSQ 370

Query: 346 CQLT--GQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKE 403
             L    +    L  L  L  L +S N     +P        + +  LS   I       
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429

Query: 404 LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAE 463
              L+ L +  N  +     LP                   L+  ++++ N L   +P +
Sbjct: 430 PQTLEVLDVSNNNLDSFSLFLP------------------RLQ-ELYISRNKLK-TLP-D 468

Query: 464 TGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHL 504
                 L V+ +  N           +LT L+++ L  N  
Sbjct: 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 98.3 bits (245), Expect = 6e-22
 Identities = 67/380 (17%), Positives = 125/380 (32%), Gaps = 36/380 (9%)

Query: 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI- 198
           S    S+P  +   A+++   L FNK++     D+    +L VL L S   I +I  D  
Sbjct: 14  SRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAF 70

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL 258
             L +L++L L  N+LS    S     ++LK LNLMGN +        F  L+ L+T+ +
Sbjct: 71  YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 259 Y-INMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317
             +  F+    +       L  L +    L      + +K         ++++ L L ++
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLK-------SIRDIHHLTLHLS 182

Query: 318 FMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP 377
                         +D   ++R + L    L       L        +     + +    
Sbjct: 183 ESAFLLEI-----FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 378 GWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH 437
             F  L  L  + L  + +               +                     + + 
Sbjct: 238 ESFNELLKLLRYILELSEVE---------FDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 438 QYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERL 497
           +            +    L   +      L+ +  + + N+       +    L  LE L
Sbjct: 289 RRLH---------IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339

Query: 498 DLSKNHLSENNLQGPIPSGG 517
           DLS+N + E  L+     G 
Sbjct: 340 DLSENLMVEEYLKNSACKGA 359

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (296), Expect = 3e-28
 Identities = 81/485 (16%), Positives = 151/485 (31%), Gaps = 73/485 (15%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
           +  +L+H+S L L+ N +   L + +F  L+ L+ +     +L+      I  L      
Sbjct: 71  AYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK----- 124

Query: 106 CSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164
            +++ L+ ++N   S ++P    N + L+                           L  N
Sbjct: 125 -TLKELNVAHNLIQSFKLPEYFSNLTNLEHL------------------------DLSSN 159

Query: 165 KLSGFISNDIINLTSLLVLELY---SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSS 221
           K+      D+  L  + +L L    S   +  I     K   L  L L  N  S ++  +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 222 MM-NCTNLKTLNLMGNLFAGN-----LSAYNFSVLSQLETIDLYINMFTGSFLL---TLT 272
            +     L+   L+   F                L  L   +  +               
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 273 SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKIS 332
               +++  L    +E ++           L         F T+   +     +  NK  
Sbjct: 280 CLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 333 D-----GFQNLRAVSLAGCQLT--GQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPS 385
           +        +L  + L+   L+  G         T L+ L LS N +  ++   F  L  
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397

Query: 386 LFYFALSQNNIS----GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR 441
           L +     +N+           L  L  L I               +F   +S       
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR----VAFNGIFNGLSS------- 446

Query: 442 IFGLRPTIFLANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLS 500
              L   + +A NS       +   +L+ L  LDL         P   + L+ L+ L+++
Sbjct: 447 ---LE-VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 501 KNHLS 505
            N L 
Sbjct: 503 SNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (294), Expect = 5e-28
 Identities = 84/492 (17%), Positives = 152/492 (30%), Gaps = 66/492 (13%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
               +L+LS N +   L   SF     L+++DLS   +       I   A+      +  
Sbjct: 28  FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQT-----IEDGAYQS-LSHLST 80

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGF 169
           L  + N   S         S L+   A     L SL +       +L+E ++  N +  F
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 170 ISNDII-NLTSLLVLELYSKELIGSIPRDIGKLTNLKYLL----LYRNNLSGSLPSSMMN 224
              +   NLT+L  L+L S ++      D+  L  +  L     L  N ++  +      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 225 CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLAC 284
              L  L L  N  + N+       L+ LE   L +  F                     
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE------------------ 240

Query: 285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLA 344
                     + K     L G  NL +    + +++    +     + +   N+ + SL 
Sbjct: 241 --------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD--IIDLFNCLTNVSSFSLV 290

Query: 345 GCQLTGQVPL-WLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP-K 402
              +       +      LE++     Q           L SL     + N     F   
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFP------TLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 403 ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH---QYNRIFGLRPTIF--------- 450
           +L  L+ L + +N  +               S  +    +N +  +              
Sbjct: 345 DLPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 451 LANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNL 509
             +++L           L+ L  LD+ + +   +     + L+ LE L ++ N   EN L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 510 QGPIPSGGQLHT 521
                    L  
Sbjct: 463 PDIFTELRNLTF 474

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (268), Expect = 1e-24
 Identities = 74/443 (16%), Positives = 130/443 (29%), Gaps = 62/443 (13%)

Query: 139 YSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI 198
                  +PD++    S +   L FN L    S    +   L VL+L   E+        
Sbjct: 15  MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL 258
             L++L  L+L  N +      +    ++L+ L  +    A +L  +    L  L+ +++
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 259 YINMFT-GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCK---------- 307
             N+          ++   L  L L+ N+++     ++  L  + L+             
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 308 ---------NLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPL---- 354
                     L+ L L  NF +             G   L    L   +   +  L    
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVM----KTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 355 --WLSKLTKLEVLLLSGNQITGS---IPGWFGNLPSLFYFALSQNNISGEFPKE-LSRLQ 408
              L  L  L +       +      I   F  L ++  F+L    I            Q
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 409 PLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRP--------TIFLANNSLS--G 458
            L +   KF +     P     +    +   N+               + L+ N LS  G
Sbjct: 308 HLELVNCKFGQ----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 459 RIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIP---- 514
                      L  LDL  N    ++ +    L  LE LD   ++L + +          
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 515 ------SGGQLHTFPPSSFEGNP 531
                 S           F G  
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLS 445

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (257), Expect = 2e-23
 Identities = 84/475 (17%), Positives = 143/475 (30%), Gaps = 77/475 (16%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
            IG+L  +  LN++HN +        F  LT LE +DLS N +       +  L  +   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL--HQMP 176

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
                LD S N                          +  +    +    L + +L  N 
Sbjct: 177 LLNLSLDLSLNP-------------------------MNFIQPGAFKEIRLHKLTLRNNF 211

Query: 166 LSGFISNDII-NLTSLLVLELYSKELIGS---IPRDIGKLTNLKYLLLYRNNLSG----- 216
            S  +    I  L  L V  L   E          D   L  L  L +    L+      
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 217 -SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCR 275
             +       TN+ + +L+                  LE ++     F    L +L    
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR-- 329

Query: 276 LLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGF 335
               L    N+                 +   +L  L L+ N ++        ++   G 
Sbjct: 330 ----LTFTSNKGGNAFS----------EVDLPSLEFLDLSRNGLSFKGCC---SQSDFGT 372

Query: 336 QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP-GWFGNLPSLFYFALSQN 394
            +L+ + L+   +   +      L +LE L    + +        F +L +L Y  +S  
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 395 NISG---EFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFL 451
           +           LS L+ L +  N F  N     F    N             L   + L
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-------------LT-FLDL 477

Query: 452 ANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505
           +   L  ++       L  L VL++ +N           +LT L+++ L  N   
Sbjct: 478 SQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.2 bits (232), Expect = 3e-20
 Identities = 80/395 (20%), Positives = 130/395 (32%), Gaps = 60/395 (15%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE--LTGLIPSLAWN 102
           P       +  L L +N     +       L  LE+  L       E  L     S    
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
               ++     +Y D+       L NC    S  +  S  +  + D  Y     +   L 
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELV 312

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS--GSLPS 220
             K   F +   + L SL  L   +    G+   ++  L +L++L L RN LS  G    
Sbjct: 313 NCKFGQFPT---LKLKSLKRLTF-TSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQ 367

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT----GSFLLTLTSCRL 276
           S    T+LK L+L  N     +S+ NF  L QLE +D   +        S  L+L +   
Sbjct: 368 SDFGTTSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN--- 422

Query: 277 LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQ 336
           L  L ++           I                                     +G  
Sbjct: 423 LIYLDISHTHTRV-AFNGIF------------------------------------NGLS 445

Query: 337 NLRAVSLAGCQLTGQV-PLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395
           +L  + +AG        P   ++L  L  L LS  Q+    P  F +L SL    ++ N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 396 ISG---EFPKELSRLQPLVIEQNKFNRNKPDLPFF 427
           +          L+ LQ + +  N ++ + P + + 
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 6e-15
 Identities = 55/294 (18%), Positives = 101/294 (34%), Gaps = 34/294 (11%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            L  + NLT I    L++   +    I+ F+ LT +    L   ++       +   ++N
Sbjct: 250 ALEGLCNLT-IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-----VKDFSYN 303

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCS----RLKSFQAG-----------YSNLLRSL- 146
             +  + L++  +  F +     L   +    +  +  +              N L    
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 147 --PDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTN 203
                 +   SL+   L FN +   +S++ + L  L  L+     L       +   L N
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 204 LKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMF 263
           L YL +   +   +        ++L+ L + GN F  N     F+ L  L  +DL     
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 264 TGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317
                    S   L  L +A NQL+  +P  I            +L  ++L  N
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFD-------RLTSLQKIWLHTN 528

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (291), Expect = 6e-28
 Identities = 101/481 (20%), Positives = 172/481 (35%), Gaps = 74/481 (15%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            + +   L       L   +V   +       L  +  +      +   + G+       
Sbjct: 16  QIFTDTALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIK-SIDGV------- 64

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
               ++  ++FS N  +   P  L N ++L       +N +  +   +    +L   +L 
Sbjct: 65  EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM-NNNQIADIT-PLANLTNLTGLTLF 120

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM 222
            N+++      + NLT+L  LEL S  +  S    +  LT+L+ L    N ++   P + 
Sbjct: 121 NNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFG-NQVTDLKPLA- 174

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL 282
            N T L+ L++  N  + ++S    + L+ LE++    N  +   +  L     L  L L
Sbjct: 175 -NLTTLERLDISSNKVS-DIS--VLAKLTNLESLIATNNQISD--ITPLGILTNLDELSL 228

Query: 283 ACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD-----GFQN 337
             NQL+  I           L    NL  L L              N+IS+     G   
Sbjct: 229 NGNQLKD-IGT---------LASLTNLTDLDL------------ANNQISNLAPLSGLTK 266

Query: 338 LRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397
           L  + L   Q++   P  L+ LT L  L L+ NQ+    P    NL +L Y  L  NNIS
Sbjct: 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322

Query: 398 GEFP-KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH-QYNRIFGLRP-------- 447
              P   L++LQ L    NK +    D+         +     +N+I  L P        
Sbjct: 323 DISPVSSLTKLQRLFFYNNKVS----DVSSLANLTNINWLSAGHNQISDLTPLANLTRIT 378

Query: 448 TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSEN 507
            + L + + +         +   N +           P  IS        D++ N  S  
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYT 436

Query: 508 N 508
           N
Sbjct: 437 N 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  113 bits (286), Expect = 3e-27
 Identities = 94/459 (20%), Positives = 175/459 (38%), Gaps = 73/459 (15%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            +  +  L +++ +N S+N +     I     LT L  I ++ N ++      I  LA  
Sbjct: 60  SIDGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIAD-----ITPLA-- 109

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
            +  ++  L    N  +      L N + L   +    N +  +   +    SL++ S  
Sbjct: 110 -NLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSS-NTISDIS-ALSGLTSLQQLSFG 164

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM 222
            N+++      + NLT+L  L++ S ++  S    + KLTNL+ L+   N +S    + +
Sbjct: 165 -NQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI--TPL 217

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL 282
              TNL  L+L GN    ++     + L+ L  +DL  N  +   L  L+    LT L+L
Sbjct: 218 GILTNLDELSLNGNQLK-DIG--TLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKL 272

Query: 283 ACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD-----GFQN 337
             NQ+    P          L G   L  L L            ++N++ D       +N
Sbjct: 273 GANQISNISP----------LAGLTALTNLEL------------NENQLEDISPISNLKN 310

Query: 338 LRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397
           L  ++L    ++   P  +S LTKL+ L    N+++        NL ++ + +   N IS
Sbjct: 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQIS 366

Query: 398 GEFP-KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNS- 455
              P   L+R+  L +    +     + P     N +  +   N    L     +++   
Sbjct: 367 DLTPLANLTRITQLGLNDQAWT----NAPVNYKANVSIPNTVKNVTGALIAPATISDGGS 422

Query: 456 ---------LSGRIPAETGQLKFLNVLDLGNNNFAGSIP 485
                    L       +        +  G   F+G++ 
Sbjct: 423 YTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 31/189 (16%)

Query: 329 NKISD-----GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNL 383
             I+               L    +T  V    + L ++  L      I  SI G    L
Sbjct: 12  TPINQIFTDTALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SIDG-VEYL 67

Query: 384 PSLFYFALSQNNISG-EFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRI 442
            +L     S N ++     K L++L  +++  N+           + P  N T+      
Sbjct: 68  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--------ITPLANLTN------ 113

Query: 443 FGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN 502
             L   + L NN ++   P     L  LN L+L +N    S  + +S LT L++L     
Sbjct: 114 --LT-GLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQ 166

Query: 503 HLSENNLQG 511
                 L  
Sbjct: 167 VTDLKPLAN 175

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (265), Expect = 2e-24
 Identities = 73/355 (20%), Positives = 125/355 (35%), Gaps = 61/355 (17%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
           T    L+L  N +   L  + F     LE ++L+ N +S      +   A+N+ F ++R 
Sbjct: 32  TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVS-----AVEPGAFNNLF-NLRT 84

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
           L    N              RLK    G   +   L        +L +  +  NK+   +
Sbjct: 85  LGLRSN--------------RLKLIPLG---VFTGLS-------NLTKLDISENKIVILL 120

Query: 171 SNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK 229
                +L +L  LE+     +  I       L +L+ L L + NL+     ++ +   L 
Sbjct: 121 DYMFQDLYNLKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 230 TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289
            L L        +  Y+F  L +L+ +++    +  +          LT+L +    L  
Sbjct: 180 VLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 290 QIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD-------GFQNLRAVS 342
            +P   ++           L  L L              N IS            L+ + 
Sbjct: 238 AVPYLAVR-------HLVYLRFLNL------------SYNPISTIEGSMLHELLRLQEIQ 278

Query: 343 LAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397
           L G QL    P     L  L VL +SGNQ+T      F ++ +L    L  N ++
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.5 bits (243), Expect = 8e-22
 Identities = 66/350 (18%), Positives = 109/350 (31%), Gaps = 65/350 (18%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
           ++P  I   T  + L L +N +         +  +L+ L L  N+ +  +    F+ L  
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFN 81

Query: 253 LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312
           L T+ L  N      L   T    LT L ++ N++   +   +            NL  L
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYM-------FQDLYNLKSL 133

Query: 313 FLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQI 372
            +  N +   +          G  +L  ++L  C LT      LS L  L VL L    I
Sbjct: 134 EVGDNDLVYISHR-----AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 373 TGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQ 432
                  F  L  L    +S                 L                      
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT--------------------- 227

Query: 433 NSTSHQYNRIFGLRPTIFLANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQI-SQ 490
                          ++ + + +L+  +P      L +L  L+L  N  + +I   +  +
Sbjct: 228 ---------------SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHE 270

Query: 491 LTILERLDLSKNHLSE---------NNLQGPIPSGGQLHTFPPSSFEGNP 531
           L  L+ + L    L+          N L+    SG QL T   S F    
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.6 bits (238), Expect = 4e-21
 Identities = 65/355 (18%), Positives = 114/355 (32%), Gaps = 56/355 (15%)

Query: 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI- 198
                ++P+ I          L  N++     ++  +   L  LEL ++ ++ ++     
Sbjct: 20  RKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELEL-NENIVSAVEPGAF 76

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSM-MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID 257
             L NL+ L L  N L   +P  +    +NL  L++  N     L  Y F  L  L++++
Sbjct: 77  NNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLE 134

Query: 258 LYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317
           +  N          +    L  L L    L   IP E        L     L VL L   
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEA-------LSHLHGLIVLRL--- 183

Query: 318 FMNEATPNYDQNKIS-------DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGN 370
                        I+            L+ + ++       +         L  L ++  
Sbjct: 184 ---------RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 371 QITGSIPGWFGNLPSLFYFALSQNNIS----GEFPKELSRLQPLVIEQNKFNRNKPDLPF 426
            +T        +L  L +  LS N IS         EL RLQ + +   +       +  
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML-HELLRLQEIQLVGGQLA----VVEP 289

Query: 427 FLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET-GQLKFLNVLDLGNNNF 480
           + F   N           LR  + ++ N L+  +       +  L  L L +N  
Sbjct: 290 YAFRGLNY----------LR-VLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 55/321 (17%), Positives = 106/321 (33%), Gaps = 25/321 (7%)

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHF 163
               RLLD   N   +       +   L+  +    N++ ++    +    +L    L  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 164 NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSM 222
           N+L          L++L  L++   + I  +   +   L NLK L +  N+L   +    
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147

Query: 223 -MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALR 281
                +L+ L L       ++     S L  L  + L           +      L  L 
Sbjct: 148 FSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 282 LACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAV 341
           ++       + P  +           NL  L +T   +                  LR +
Sbjct: 207 ISHWPYLDTMTPNCLYG--------LNLTSLSITHCNLTAVPYL-----AVRHLVYLRFL 253

Query: 342 SLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS---- 397
           +L+   ++      L +L +L+ + L G Q+    P  F  L  L    +S N ++    
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313

Query: 398 GEFPKELSRLQPLVIEQNKFN 418
             F   +  L+ L+++ N   
Sbjct: 314 SVF-HSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 51/271 (18%), Positives = 92/271 (33%), Gaps = 20/271 (7%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
           NL ++  L L  N +   +P+  F  L+ L  +D+S N +      ++    +     ++
Sbjct: 78  NLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIV-----ILLDYMFQD-LYNL 130

Query: 109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDI-YAAASLEEPSLHFNKLS 167
           + L+   ND            + L+         L S+P +       L    L    ++
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLE-KCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 168 GFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM-MNCT 226
                    L  L VLE+     + ++  +     NL  L +   NL+ ++P     +  
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV 248

Query: 227 NLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQ 286
            L+ LNL  N  +  +       L +L+ I L                  L  L ++ NQ
Sbjct: 249 YLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 287 LEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317
           L   +   +            NL  L L  N
Sbjct: 308 LT-TLEESVFH-------SVGNLETLILDSN 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (263), Expect = 3e-24
 Identities = 77/475 (16%), Positives = 149/475 (31%), Gaps = 63/475 (13%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTL------------LEIIDLSYNSLSGEL 92
               N+   +    + +      P  +     +               ++L+   LS  L
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL 86

Query: 93  TGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYA 152
             L P L           L  S N  +  +P    +   L          L  LP     
Sbjct: 87  PELPPHL---------ESLVASCNSLTE-LPELPQSLKSLLVDNN-NLKALSDLPP---- 131

Query: 153 AASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRN 212
              LE   +  N+L      ++ N + L ++++ +  L   +P       +L+++    N
Sbjct: 132 --LLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGNN 183

Query: 213 NLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLT 272
            L   LP  + N   L  +    N            +   LE+I    N+     L  L 
Sbjct: 184 QLE-ELPE-LQNLPFLTAIYADNNSLK-----KLPDLPLSLESIVAGNNILE--ELPELQ 234

Query: 273 SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKIS 332
           +   LT +    N L+  +P     L++L +      ++  L  +           + +S
Sbjct: 235 NLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 293

Query: 333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS 392
           +   NL  ++ +  ++             LE L +S N++   +P     L  L     S
Sbjct: 294 ELPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---AS 345

Query: 393 QNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFL--FPNQNSTSHQYNRIFGLRPTIF 450
            N+++ E P+    L+ L +E N      PD+P  +      +  +        L+  + 
Sbjct: 346 FNHLA-EVPELPQNLKQLHVEYNPLREF-PDIPESVEDLRMNSHLAEVPELPQNLK-QLH 402

Query: 451 LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505
           +  N L    P     ++    L + +                LE      +H  
Sbjct: 403 VETNPLR-EFPDIPESVE---DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.4 bits (243), Expect = 9e-22
 Identities = 66/397 (16%), Positives = 128/397 (32%), Gaps = 73/397 (18%)

Query: 139 YSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY------------ 186
           +S+ L  +P +     S  E    +++              + V  L             
Sbjct: 19  HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL 78

Query: 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYN 246
           +   + S+P       +L+ L+   N+L+  LP    +  +L   N      +       
Sbjct: 79  NNLGLSSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS------- 127

Query: 247 FSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLIL--- 303
             +   LE + +  N      L  L +   L  + +  N L+ ++P     L+ +     
Sbjct: 128 -DLPPLLEYLGVSNNQLE--KLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNN 183

Query: 304 --------MGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLW 355
                        L  ++   N + +         + D   +L ++      L       
Sbjct: 184 QLEELPELQNLPFLTAIYADNNSLKK---------LPDLPLSLESIVAGNNILE--ELPE 232

Query: 356 LSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQN 415
           L  L  L  +    N +  ++P    +L +L    +  N ++ + P+    L  L + +N
Sbjct: 233 LQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLT-DLPELPQSLTFLDVSEN 287

Query: 416 KFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTI------FLANNSLSGRIPAETGQLKF 469
            F+     L     PN    +   N I  L           ++NN L   +PA   +L+ 
Sbjct: 288 IFSG----LSELP-PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE- 340

Query: 470 LNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSE 506
              L    N+ A  +P     L    +L +  N L E
Sbjct: 341 --RLIASFNHLA-EVPELPQNLK---QLHVEYNPLRE 371

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 58/355 (16%), Positives = 112/355 (31%), Gaps = 46/355 (12%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            LP + N + +  +++ +N +   LP         LE I    N L       +P L   
Sbjct: 145 KLPELQNSSFLKIIDVDNNSLKK-LP----DLPPSLEFIAAGNNQLEE-----LPELQ-- 192

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
            +   +  +    N     +P    +   + +     +N+L  LP ++     L      
Sbjct: 193 -NLPFLTAIYADNNSLKK-LPDLPLSLESIVA----GNNILEELP-ELQNLPFLTTIYAD 245

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM 222
            N L   + +   +L +L V + Y    +  +P     LT L       + LS   P   
Sbjct: 246 NNLLKT-LPDLPPSLEALNVRDNY----LTDLPELPQSLTFLDVSENIFSGLSELPP--- 297

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL 282
               NL  LN   N     + +    +   LE +++  N               L  L  
Sbjct: 298 ----NLYYLNASSN----EIRSL-CDLPPSLEELNVSNNKLI-ELPALPPR---LERLIA 344

Query: 283 ACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVS 342
           + N L  ++P     LK L +     L         + +   N    ++ +  QNL+ + 
Sbjct: 345 SFNHLA-EVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402

Query: 343 LAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397
           +    L  + P     +  L    ++  ++             L       ++  
Sbjct: 403 VETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 64/379 (16%), Positives = 115/379 (30%), Gaps = 70/379 (18%)

Query: 169 FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNL 228
           FI+   ++ T L     +S  L   +P +   + +        +    + P        +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 229 KTLNLMGNLFAG----NLSAYNFSVL----SQLETIDLYINMFTGSFLLTLTSCRLLTAL 280
               L   L        L+    S L      LE++    N  T        S + L   
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVD 119

Query: 281 RLACNQLEGQIPPEIIKLKSLILMG-----------CKNLNVLFLTMNFMNEATPNYDQN 329
                 L    P     L+ L +                L ++ +  N + +        
Sbjct: 120 NNNLKALSDLPP----LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-------- 167

Query: 330 KISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW---------- 379
            + D   +L  ++    QL       L  L  L  +    N +   +P            
Sbjct: 168 -LPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAG 223

Query: 380 ---------FGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFP 430
                      NLP L       N +    P     L+ L +  N    + P+LP  L  
Sbjct: 224 NNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT-DLPELPQSL-T 280

Query: 431 NQNSTSHQYNRIFGLRPTI---FLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQ 487
             + + + ++ +  L P +     ++N +   +      L+    L++ NN     +P  
Sbjct: 281 FLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-ELPAL 335

Query: 488 ISQLTILERLDLSKNHLSE 506
             +   LERL  S NHL+E
Sbjct: 336 PPR---LERLIASFNHLAE 351

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (257), Expect = 3e-24
 Identities = 52/369 (14%), Positives = 102/369 (27%), Gaps = 59/369 (15%)

Query: 143 LRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLT 202
           + S     + ++  E      +       + +         +                  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSN 56

Query: 203 NLKYLLLYRNNLSGSLPSSMMNCT--NLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYI 260
           N +        L  +    + + T      L L                LS L+ + +  
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPD-QAFRLSHLQHMTIDA 113

Query: 261 NMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLI---LMGCKNLNVLFLTMN 317
                    T+     L  L LA N L   +P  I  L  L    +  C  L  L   + 
Sbjct: 114 AGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171

Query: 318 FMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP 377
                  + D +    G  NL+++ L    +   +P  ++ L  L+ L +  + ++ ++ 
Sbjct: 172 -------STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222

Query: 378 GWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH 437
               +LP L    L        +P       PL                           
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK-------------------------- 256

Query: 438 QYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERL 497
                      + L + S    +P +  +L  L  LDL        +P+ I+QL     +
Sbjct: 257 ----------RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 498 DLSKNHLSE 506
            +  +  ++
Sbjct: 307 LVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 9e-23
 Identities = 48/301 (15%), Positives = 94/301 (31%), Gaps = 55/301 (18%)

Query: 141 NLLRSLPDDIYAAAS--LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI 198
             L++  D +  A         L    L     +    L+ L  + + +  L+  +P  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL 258
            +   L+ L L RN L  +LP+S+ +   L+ L++                  +L  +  
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC--------------PELTELPE 168

Query: 259 YI-NMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317
            + +         L +   L +LRL    +   +P  I  L++L     K+L +      
Sbjct: 169 PLASTDASGEHQGLVN---LQSLRLEWTGIR-SLPASIANLQNL-----KSLKI------ 213

Query: 318 FMNEATPNYDQNKISD------GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSG-N 370
                      + +S           L  + L GC      P        L+ L+L   +
Sbjct: 214 ---------RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 371 QITGSIPGWFGNLPSLFYFALSQNNISGEFPKE---LSRLQPLVIEQNKFNRNKPDLPFF 427
            +  ++P     L  L    L         P     L     +++  +   +     P  
Sbjct: 265 NLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

Query: 428 L 428
            
Sbjct: 324 R 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 8e-21
 Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 7/196 (3%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL---TGLIPSLAW 101
            ++     +  L L+ N +   LP  S   L  L  + +       EL        +   
Sbjct: 121 DTMQQFAGLETLTLARNPLRA-LP-ASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 102 NHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSL 161
           +    +++ L   +    S +P  + N   LKS +    + L +L   I+    LEE  L
Sbjct: 179 HQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDL 236

Query: 162 HFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSS 221
                             L  L L     + ++P DI +LT L+ L L        LPS 
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 222 MMNCTNLKTLNLMGNL 237
           +        + +  +L
Sbjct: 297 IAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 31/191 (16%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLP--------INSFHFLTLLEIIDLSYNSLS------G 90
            SI +L  +  L++        LP              L  L+ + L +  +        
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA 203

Query: 91  ELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDI 150
            L  L             + L    +  S+ + P + +  +L+         LR+ P   
Sbjct: 204 NLQNL-------------KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 151 YAAASLEEPSL-HFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLL 209
              A L+   L   + L   +  DI  LT L  L+L     +  +P  I +L     +L+
Sbjct: 250 GGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 210 YRNNLSGSLPS 220
              +L   L  
Sbjct: 309 -PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 8/136 (5%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
            SI NL ++  L + ++ +   L   + H L  LE +DL   +    L    P       
Sbjct: 200 ASIANLQNLKSLKIRNSPLSA-LG-PAIHHLPKLEELDLRGCT---ALRNYPPIFG---G 251

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164
              ++ L          +P  +   ++L+         L  LP  I    +     +  +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 165 KLSGFISNDIINLTSL 180
             +    +  +   + 
Sbjct: 312 LQAQLDQHRPVARPAE 327

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  102 bits (255), Expect = 2e-23
 Identities = 51/384 (13%), Positives = 110/384 (28%), Gaps = 34/384 (8%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
               + +L+ +  L+L++N+      +        +E +  + N++S      +      
Sbjct: 72  ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISR-----VSC---- 116

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA--ASLEEPS 160
                 + +  + N  +       G  SR++       N + ++     AA   +LE  +
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLN 175

Query: 161 LHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS 220
           L +N +        +    L  L+L S + +  +  +      + ++ L  N L   +  
Sbjct: 176 LQYNFIYDV--KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280
           ++    NL+  +L GN F        FS   +++T+                 C + T  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTLG 289

Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
                  E            LI +  K   +L    +         +           R 
Sbjct: 290 HYGAYCCE---DLPAPFADRLIALKRKEHALLSGQGSETERLECEREN------QARQRE 340

Query: 341 VSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEF 400
           +     Q    +     +      L      +   +         L    L Q     E 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG-TLQQAVGQIEL 399

Query: 401 PKELSRLQPLVIEQNKFNRNKPDL 424
                   PL + +    R +   
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMY 423

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (253), Expect = 5e-23
 Identities = 64/383 (16%), Positives = 114/383 (29%), Gaps = 43/383 (11%)

Query: 140 SNLLRSLPDDIYAA-ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI 198
            + L+     +  +  +++E  L  N LS   + D+   T L +L L S  L      D+
Sbjct: 19  DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDL 76

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL 258
             L+ L+ L L  N +   L        +++TL+   N    N+S  + S     + I L
Sbjct: 77  ESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAANN----NISRVSCSRGQGKKNIYL 127

Query: 259 YINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNF 318
             N  T    L       +  L L  N+++     E+             L  L L  NF
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-------SDTLEHLNLQYNF 180

Query: 319 MNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPG 378
           + +             F  L+ + L+  +L   +         +  + L  N++   I  
Sbjct: 181 IYDVKGQV-------VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 379 WFGNLPSLFYFALSQNNIS-GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH 437
                 +L +F L  N    G      S+ Q +     +  +                 +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 438 QYNRIFGLRPTIF--------------LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGS 483
                  L                       S + R+  E         +D     +   
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351

Query: 484 IPNQISQLTILERLDLSKNHLSE 506
           I     +      L+  K  L E
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDE 374

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.3 bits (237), Expect = 5e-21
 Identities = 56/407 (13%), Positives = 108/407 (26%), Gaps = 45/407 (11%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
              +  ++  L+LS N +   +        T LE+++LS N L          L    S 
Sbjct: 29  LRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYE-----TLDL---ESL 79

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
            ++R LD + N         L     +++  A   N +  +          +   L  NK
Sbjct: 80  STLRTLDLNNNYVQE-----LLVGPSIETLHAAN-NNISRVSCSR--GQGKKNIYLANNK 131

Query: 166 LSGFISNDIINLTSLLVLELYSKELIG-SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMN 224
           ++     D    + +  L+L   E+   +          L++L L  N +   +    + 
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VV 189

Query: 225 CTNLKTLNLMGNLFAGNLSA--YNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL 282
              LKTL+L  N     L+     F   + +  I L  N         L   + L    L
Sbjct: 190 FAKLKTLDLSSN----KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244

Query: 283 ACNQLEGQIPPEII---------------KLKSLILMGCKNLNVLFLTMNFMNEATPNYD 327
             N        +                 KL       C    +         +    + 
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 328 QNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLF 387
              I+   +    +S  G +    +        +   +     Q    I        +  
Sbjct: 305 DRLIALKRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 388 YFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNS 434
                +  +  +          L  +                  Q+ 
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAEL--DGTLQQAVGQIELQHATEEQSP 408

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.9 bits (223), Expect = 3e-19
 Identities = 56/366 (15%), Positives = 105/366 (28%), Gaps = 46/366 (12%)

Query: 170 ISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK 229
           I     N     + ++    L  ++        N+K L L  N LS    + +   T L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 230 TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289
            LNL  N+        +   LS L T+DL  N         L     +  L  A N +  
Sbjct: 62  LLNLSSNVLY---ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 290 QIPPE--------------IIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGF 335
           ++                 I  L+ L       +  L L +N ++         +++   
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF----AELAASS 168

Query: 336 QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395
             L  ++L    +   V   +    KL+ L LS N++   +   F +   + + +L  N 
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 396 ISGEFPKE---LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR-----IFGLRP 447
           +     K       L+   +  N F+       F       + + Q  +           
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 448 TIFLANNSLSGRIPAETGQLKFLNVLDLGNN-------NFAGSIPNQISQLTILERLDLS 500
              L +                L  L    +       +    +  +         +D  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344

Query: 501 KNHLSE 506
           K     
Sbjct: 345 KEQYRT 350

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 37/333 (11%), Positives = 87/333 (26%), Gaps = 14/333 (4%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
             G  + + +L+L  N +              LE ++L YN +       +        F
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-----VKGQV---VF 190

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
             ++ LD S N  +  + P   + + +       +N L  +   +  + +LE   L  N 
Sbjct: 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL-RNNKLVLIEKALRFSQNLEHFDLRGNG 248

Query: 166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNC 225
                +       +  V  +  + +     ++  + T                       
Sbjct: 249 FHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 226 TNLKTLNLMGNLFAGNLSA---YNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL 282
             LK          G+ +          ++   ID     +           +    L  
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 283 ACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVS 342
               L+ Q+         L     + +  + L      ++     +  +    +      
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427

Query: 343 LAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGS 375
                      ++  K T+L        ++ G 
Sbjct: 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 13/221 (5%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
            ++    ++ H +L  N  H     + F     ++ +                       
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE--------E 282

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLK----SFQAGYSNLLRSLPDDIYAAASLEEPS 160
                L  +          P       LK    +  +G  +    L  +    A   E  
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 161 LHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS 220
               +    I    +   + + LE   K L   +         L   L         L  
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQH 401

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
           +    + L+ L  +   +            + +   D+Y +
Sbjct: 402 ATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 54/366 (14%), Positives = 114/366 (31%), Gaps = 45/366 (12%)

Query: 143 LRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKL 201
            + +  ++       +  +       +   + I L +  ++       +  +P  +    
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTF-KNSTMRKLPAALLDSF 68

Query: 202 TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
             ++ L L    +      +      ++ L +  N     L  + F  +  L  + L  N
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 262 MFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNE 321
             +        +   LT L ++ N LE        +++        +L  L L+ N +  
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLE--------RIEDDTFQATTSLQNLQLSSNRLTH 179

Query: 322 ATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFG 381
              +           +L   +++   L+      L+    +E L  S N I         
Sbjct: 180 VDLS--------LIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNV 226

Query: 382 NLPSLFYFALSQNNISG-EFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYN 440
            L  L    L  NN++   +      L  + +  N+       + +  F           
Sbjct: 227 ELTILK---LQHNNLTDTAWLLNYPGLVEVDLSYNELE----KIMYHPFVKMQR------ 273

Query: 441 RIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLS 500
               L   ++++NN L   +      +  L VLDL +N+    +     Q   LE L L 
Sbjct: 274 ----LE-RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326

Query: 501 KNHLSE 506
            N +  
Sbjct: 327 HNSIVT 332

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 65/464 (14%), Positives = 137/464 (29%), Gaps = 106/464 (22%)

Query: 74  FLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLK 133
                   D+  +  + ++      +    +  + +++ F  +         L +  +++
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDI----TLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 134 SFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG 192
                    +  +    +A   ++++  + FN +     +   N+  L VL L  +  + 
Sbjct: 73  LLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL-ERNDLS 130

Query: 193 SIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLS 251
           S+PR I      L  L +  NNL      +    T+L+ L L  N     L+  + S++ 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHVDLSLIP 186

Query: 252 QLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNV 311
            L   ++  N+ +     TL     +  L  + N +   +   +                
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV---------------- 224

Query: 312 LFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQ 371
                                     L  + L    LT     WL     L  + LS N+
Sbjct: 225 -----------------------NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNE 259

Query: 372 ITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPN 431
           +   +   F  +  L    +S N +          +  L +                   
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV------------------- 299

Query: 432 QNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQL 491
                            + L++N L   +     Q   L  L L +N+   ++   +S  
Sbjct: 300 -----------------LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTH 338

Query: 492 TILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCS 535
             L+ L LS N    N+L+               + +   + C 
Sbjct: 339 HTLKNLTLSHNDWDCNSLRAL------FRNVARPAVDDADQHCK 376

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.0 bits (242), Expect = 5e-22
 Identities = 66/379 (17%), Positives = 127/379 (33%), Gaps = 45/379 (11%)

Query: 42  YHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAW 101
           Y       L +   +   ++ +   LP         +E+++L+   +    T        
Sbjct: 36  YFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH- 93

Query: 102 NHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPS 160
                +++ L   +N      P    N   L        N L SLP  I+     L   S
Sbjct: 94  -----TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLS 147

Query: 161 LHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS 220
           +  N L     +     TSL  L+L S   +  +   +  + +L +  +  N L     S
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLL-----S 199

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280
           ++     ++ L+   N    +++     V  +L  + L  N  T      L +   L  +
Sbjct: 200 TLAIPIAVEELDASHN----SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEV 253

Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
            L+ N+LE +I            +  + L  L+++ N +         N        L+ 
Sbjct: 254 DLSYNELE-KIMYH-------PFVKMQRLERLYISNNRLVAL------NLYGQPIPTLKV 299

Query: 341 VSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG-- 398
           + L+   L   V     +  +LE L L  N I  ++        +L    LS N+     
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNS 355

Query: 399 --EFPKELSRLQPLVIEQN 415
                + ++R      +Q+
Sbjct: 356 LRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 47/306 (15%), Positives = 89/306 (29%), Gaps = 35/306 (11%)

Query: 211 RNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLT 270
           R      + S++        +++           +    L+  + +    +         
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHI-DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 271 LTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNK 330
           L S R +  L L   Q+E +I                 +  L++  N +    P+     
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYA-------FAYAHTIQKLYMGFNAIRYLPPH----- 111

Query: 331 ISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFA 390
           +      L  + L    L+           KL  L +S N +       F    SL    
Sbjct: 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171

Query: 391 LSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH---QYNRIFGLRP 447
           LS N ++      +  L    +  N  +               +       +N I  +R 
Sbjct: 172 LSSNRLTHVDLSLIPSLFHANVSYNLLST---------LAIPIAVEELDASHNSINVVRG 222

Query: 448 TIF-------LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLS 500
            +        L +N+L+            L  +DL  N     + +   ++  LERL +S
Sbjct: 223 PVNVELTILKLQHNNLT-DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 501 KNHLSE 506
            N L  
Sbjct: 281 NNRLVA 286

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 43/231 (18%), Positives = 85/231 (36%), Gaps = 24/231 (10%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
            +  +  + H N+S+N       +++      +E +D S+NS++      +         
Sbjct: 181 DLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSINV-----VR----GPVN 225

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYA-AASLEEPSLHFN 164
             + +L   +N+ +      L N   L      Y N L  +    +     LE   +  N
Sbjct: 226 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNN 282

Query: 165 KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMN 224
           +L   ++     + +L VL+L S   +  + R+  +   L+ L L  N++  +L  S   
Sbjct: 283 RLVA-LNLYGQPIPTLKVLDL-SHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTH- 338

Query: 225 CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCR 275
              LK L L  N +  N     F  +++    D   +      L     C+
Sbjct: 339 -HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCK 388

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 56/343 (16%), Positives = 113/343 (32%), Gaps = 69/343 (20%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
           +I          K   +  ++L  +L S   +  N+K L+L GN  +  +SA + +  ++
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 253 LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312
           LE ++L  N+      L L S   L  L L  N ++ ++                ++  L
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLV------------GPSIETL 104

Query: 313 FLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQI 372
               N ++  + +          Q  + + LA  ++T    L     ++++ L L  N+I
Sbjct: 105 HAANNNISRVSCSR--------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 373 TG-SIPGWFGNLPSLFYFALSQNNISGEFPKE--LSRLQPLVIEQNKFNRNKPDLPFFLF 429
              +      +  +L +  L  N I  +   +   ++L+ L                   
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTL------------------- 196

Query: 430 PNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQIS 489
                                L++N L+  +  E      +  + L NN     I   + 
Sbjct: 197 --------------------DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 490 QLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPE 532
               LE  DL  N      L+       ++ T    + +    
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 49/343 (14%), Positives = 114/343 (33%), Gaps = 33/343 (9%)

Query: 145 SLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNL 204
           ++ +        +   +  + L   +++   +  ++  L+L    L      D+   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 205 KYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT 264
           + L L  N L       + + + L+TL+L  N            V   +ET+    N  +
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS 112

Query: 265 GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATP 324
               ++ +  +    + LA N++          L+ L       +  L L +N ++    
Sbjct: 113 R---VSCSRGQGKKNIYLANNKIT--------MLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 325 NYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP 384
                +++     L  ++L    +   V   +    KL+ L LS N++   +   F +  
Sbjct: 162 ----AELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 385 SLFYFALSQNNISGEFPKE---LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR 441
            + + +L  N +     K       L+   +  N F+       F       + + Q  +
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 442 IFGLRPTIFLANNSLSGR---IPAETGQLKFLNVLDLGNNNFA 481
               +        +L         +        ++ LG+++  
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.3 bits (222), Expect = 9e-20
 Identities = 51/259 (19%), Positives = 90/259 (34%), Gaps = 28/259 (10%)

Query: 140 SNLLRSLPDDIYAA-ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI 198
            + L+     +  +  +++E  L  N LS   + D+   T L +L L S  L      D+
Sbjct: 19  DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDL 76

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL 258
             L+ L+ L L  N +   L        +++TL+   N    N+S  + S     + I L
Sbjct: 77  ESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAANN----NISRVSCSRGQGKKNIYL 127

Query: 259 YINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNF 318
             N  T    L       +  L L  N+++     E+             L  L L  NF
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-------SDTLEHLNLQYNF 180

Query: 319 MNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPG 378
           + +             F  L+ + L+  +L   +         +  + L  N++   I  
Sbjct: 181 IYDVKGQ-------VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 379 WFGNLPSLFYFALSQNNIS 397
                 +L +F L  N   
Sbjct: 232 ALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 46/254 (18%), Positives = 82/254 (32%), Gaps = 27/254 (10%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
              +  ++  L+LS N +   +        T LE+++LS N L          L    S 
Sbjct: 29  LRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYE-----TLDL---ESL 79

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
            ++R LD + N         L     +++  A   N +  +          +   L  NK
Sbjct: 80  STLRTLDLNNNYVQE-----LLVGPSIETLHAAN-NNISRVSCSRG--QGKKNIYLANNK 131

Query: 166 LSGFISNDIINLTSLLVLELYSKELIG-SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMN 224
           ++     D    + +  L+L   E+   +          L++L L  N +   +    + 
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VV 189

Query: 225 CTNLKTLNLMGNLFAGNLSA--YNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL 282
              LKTL+L  N     L+     F   + +  I L  N         L   + L    L
Sbjct: 190 FAKLKTLDLSSN----KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244

Query: 283 ACNQLEGQIPPEII 296
             N        +  
Sbjct: 245 RGNGFHCGTLRDFF 258

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.2 bits (201), Expect = 5e-17
 Identities = 43/262 (16%), Positives = 90/262 (34%), Gaps = 23/262 (8%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
               + +L+ +  L+L++N+      +        +E +  + N++S      +      
Sbjct: 72  ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISR-----VSC---- 116

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA--ASLEEPS 160
                 + +  + N  +       G  SR++       N + ++     AA   +LE  +
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLN 175

Query: 161 LHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS 220
           L +N +        +    L  L+L S +L   +  +      + ++ L  N L   +  
Sbjct: 176 LQYNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL-YINMFTGSFLLTLTSCRLLTA 279
           ++    NL+  +L GN F        FS   +++T+    +   TG      T   L   
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 280 LRLACNQLEGQIPPEIIKLKSL 301
               C  L       +I L   
Sbjct: 292 GAYCCEDLPAPFADRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 51/370 (13%), Positives = 97/370 (26%), Gaps = 83/370 (22%)

Query: 47  IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC 106
             N        ++ + +      +       ++ +DLS N LS      +          
Sbjct: 6   KQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------ 58

Query: 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKL 166
            + LL+ S N         L + S L++                          L+ N +
Sbjct: 59  KLELLNLSSNVLYE--TLDLESLSTLRTL------------------------DLNNNYV 92

Query: 167 SGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCT 226
                 +++   S+  L   +   I  +          K + L  N ++          +
Sbjct: 93  Q-----ELLVGPSIETLHA-ANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 227 NLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQ 286
            ++ L+L  N       A   +    LE ++L  N      +        L  L L+ N+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNK 202

Query: 287 LEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346
           L   + PE              +  + L              NK+               
Sbjct: 203 LA-FMGPEF--------QSAAGVTWISL------------RNNKLVL------------- 228

Query: 347 QLTGQVPLWLSKLTKLEVLLLSGNQIT-GSIPGWFGNLPSLFYFALSQNNISGEFPKELS 405
                +   L     LE   L GN    G++  +F     +   A           +E  
Sbjct: 229 -----IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 406 RLQPLVIEQN 415
            +  L     
Sbjct: 284 TVPTLGHYGA 293

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.9 bits (244), Expect = 6e-22
 Identities = 82/407 (20%), Positives = 129/407 (31%), Gaps = 70/407 (17%)

Query: 154 ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRN 212
           A +    L  N ++         L  L  L++  +     I  +    L++L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 213 NLSGSLPSSM-MNCTNLKTLNLMGN-LFAGNLSAYNFSVLSQLETIDLYINMFT----GS 266
                L +       NL+ L L    L    LS   F  L+ LE + L  N        S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNY 326
           F L +        L L  N+++  I  E      L+    K+  +L L+   + +    +
Sbjct: 149 FFLNMRR---FHVLDLTFNKVK-SICEED-----LLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 327 DQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSL 386
              +                           K T +  L LSGN    S+   F +  + 
Sbjct: 200 LGWEKCGNPF---------------------KNTSITTLDLSGNGFKESMAKRFFDAIAG 238

Query: 387 FYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH-QYNRIFGL 445
                   + S               +   F          L  +   T     ++IF L
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG--------LEASGVKTCDLSKSKIFAL 290

Query: 446 RPTIF----------LANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQI-SQLTI 493
             ++F          LA N ++ +I       L  L  L+L  N   GSI +++   L  
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDK 348

Query: 494 LERLDLSKNHLSE---------NNLQGPIPSGGQLHTFPPSSFEGNP 531
           LE LDLS NH+            NL+       QL + P   F+   
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.2 bits (211), Expect = 8e-18
 Identities = 74/405 (18%), Positives = 137/405 (33%), Gaps = 59/405 (14%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
           S   L  +  L +        +  N+F  L+ L I+ L YN      TG    LA     
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA----- 103

Query: 106 CSMRLLDFSYNDFSSQVPPR--LGNCSRLKSFQAGYSNLLRSLPDDIY--AAASLEEPSL 161
            ++ +L  +  +    V         + L+       N ++ +    +           L
Sbjct: 104 -NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL-RDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 162 HFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSS 221
            FNK+      D++N        L               L+++    +    L      +
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLR--------------LSSITLQDMNEYWLGWEKCGN 207

Query: 222 MMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN-------MFTGSFLLTLTSC 274
               T++ TL+L GN F  +++   F  ++  +   L ++        F  +      + 
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 275 RL-------LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYD 327
                    +    L+ +++          L   +     +L  L L  N +N+   N  
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF--------ALLKSVFSHFTDLEQLTLAQNEINKIDDN-- 317

Query: 328 QNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP-GWFGNLPSL 386
                 G  +L  ++L+   L          L KLEVL LS N I  ++    F  LP+L
Sbjct: 318 ---AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373

Query: 387 FYFALSQNNIS----GEFPKELSRLQPLVIEQNKFNRNKPDLPFF 427
              AL  N +     G F   L+ LQ + +  N ++ + P + + 
Sbjct: 374 KELALDTNQLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCPRIDYL 417

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.1 bits (203), Expect = 8e-17
 Identities = 72/400 (18%), Positives = 127/400 (31%), Gaps = 67/400 (16%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGEL-TGLIPSLAW 101
            +P +    H+++++LS N +   L   SF  L  L+ + +   +    +       L+ 
Sbjct: 24  QVPEL--PAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS- 79

Query: 102 NHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPS 160
                S+ +L   YN                             L    +   A+LE  +
Sbjct: 80  -----SLIILKLDYNQ-------------------------FLQLETGAFNGLANLEVLT 109

Query: 161 LHFNKL-SGFISNDI-INLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGS 217
           L    L    +S +    LTSL +L L    +    P      +     L L  N +  S
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-S 168

Query: 218 LPSSM---MNCTNLKTLNLMGN-------LFAGNLSAYNFSVLSQLETIDLYINMFTGS- 266
           +           +   L L           + G     N    + + T+DL  N F  S 
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 267 --FLLTLTSCRLLTALRLACNQLEGQIPP--EIIKLKSLILMGCK--NLNVLFLTMNFMN 320
                   +   + +L L+ +   G            +    G +   +    L+ + + 
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288

Query: 321 EATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWF 380
               +     +   F +L  ++LA  ++          LT L  L LS N +       F
Sbjct: 289 ALLKS-----VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 381 GNLPSLFYFALSQNNIS----GEFPKELSRLQPLVIEQNK 416
            NL  L    LS N+I       F   L  L+ L ++ N+
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELALDTNQ 382

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 72/439 (16%), Positives = 139/439 (31%), Gaps = 51/439 (11%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG-ELTGLIPSLAWNHS 104
           S   L  ++ L+  ++ +     +     LT L  +  + N+++  +L+           
Sbjct: 37  SEEQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNITTLDLSQNT-------- 85

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164
             ++  L    N  ++     +   ++L        N L  L   +     L   +   N
Sbjct: 86  --NLTYLACDSNKLTN---LDVTPLTKLTYLNCDT-NKLTKLD--VSQNPLLTYLNCARN 137

Query: 165 KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMN 224
            L+     D+ + T L  L+ +  + I  +  D+   T L  L    N ++  L  S   
Sbjct: 138 TLT---EIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELDVS--Q 189

Query: 225 CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLAC 284
              L  LN   N    N++  + +   QL  +D   N  T    + +T    LT    + 
Sbjct: 190 NKLLNRLNCDTN----NITKLDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSV 242

Query: 285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD----GFQNLRA 340
           N L       + KL +L  +   +L  + LT N            KI +        L  
Sbjct: 243 NPLTELDVSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYL 301

Query: 341 VSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG-E 399
           +      +T    L LS+  KL  L L+  ++T  +     +   L   +    +I    
Sbjct: 302 LDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFS 355

Query: 400 FPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR 459
              ++  L      + +       +P     N + T      +               G 
Sbjct: 356 SVGKIPALNNNFEAEGQTI----TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGV 411

Query: 460 IPAETGQLKFLNVLDLGNN 478
               T  + + N+      
Sbjct: 412 YDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 54/341 (15%), Positives = 97/341 (28%), Gaps = 46/341 (13%)

Query: 181 LVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG 240
            V   +  +   +I     +L  L  L  + ++++  +   +   T L  L    N    
Sbjct: 23  EVAAAFEMQATDTI--SEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSN---- 74

Query: 241 NLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKS 300
           N++  + S  + L  +    N  T    L +T    LT L    N+L      +   L  
Sbjct: 75  NITTLDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131

Query: 301 LILMG----------CKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTG 350
           L                 L  L   +N                    L  +  +  ++T 
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDV-------TPQTQLTTLDCSFNKITE 184

Query: 351 QVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPL 410
              L +S+   L  L    N IT  +         L +   S N ++      L++L   
Sbjct: 185 ---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYF 238

Query: 411 VIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPT-----IFLANNSLSGRIPAETG 465
               N       +L         +       +  +  T     I+            +  
Sbjct: 239 DCSVNPLT----ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 466 QLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSE 506
               L +LD         +   +SQ   L  L L+   L+E
Sbjct: 295 HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE 332

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 75/416 (18%), Positives = 128/416 (30%), Gaps = 80/416 (19%)

Query: 126 LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL 185
               + L S    +++ +  +   I     L +     N ++     D+   T+L  L  
Sbjct: 38  EEQLATLTSLDC-HNSSITDMTG-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLAC 92

Query: 186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAY 245
            S +L      D+  LT L YL    N L+  L  S      L  LN   N     L+  
Sbjct: 93  DSNKLTNL---DVTPLTKLTYLNCDTNKLT-KLDVS--QNPLLTYLNCARN----TLTEI 142

Query: 246 NFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMG 305
           + S  +QL  +D ++N       L +T    LT L  + N++             L +  
Sbjct: 143 DVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKIT-----------ELDVSQ 189

Query: 306 CKNLNVLFLTMNFMNEATPNYDQNKISD----GFQNLRAVSLAGCQLTGQVPLWLSKLTK 361
            K LN L              D N I+         L  +  +  +LT    + ++ LT+
Sbjct: 190 NKLLNRLNC------------DTNNITKLDLNQNIQLTFLDCSSNKLTE---IDVTPLTQ 234

Query: 362 LEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNK 421
           L     S N +T  +      L  L      Q ++      E+       +   +    +
Sbjct: 235 LTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-----EIDLTHNTQLIYFQAEGCR 286

Query: 422 PDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFA 481
                 +  N                 +      ++     +  Q   L  L L N    
Sbjct: 287 KIKELDVTHNTQLY------------LLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT 331

Query: 482 GSIPNQISQLTILERLDLSKNHLSE-------NNLQGPIPSGGQLHTFPPSSFEGN 530
             +   +S  T L+ L     H+ +         L     + GQ  T P  +   N
Sbjct: 332 -ELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNN 384

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 50/307 (16%), Positives = 88/307 (28%), Gaps = 54/307 (17%)

Query: 203 NLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM 262
           N    +     +  +   S      L +L+   +    +++      L+ L  +    N 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNN 75

Query: 263 FTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEA 322
            T    L L+    LT L    N+           L +L +     L  L    N + + 
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNK-----------LTNLDVTPLTKLTYLNCDTNKLTKL 121

Query: 323 TPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGN 382
             +            L  ++ A   LT    + +S  T+L  L    N+    +      
Sbjct: 122 DVS--------QNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTP 168

Query: 383 LPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRI 442
              L     S N I+     +   L  L  + N        L                  
Sbjct: 169 QTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNIT----KLDLNQNIQ----------- 213

Query: 443 FGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN 502
             L   +  ++N L+     +   L  L   D   N     +   +S L+ L  L   + 
Sbjct: 214 --LT-FLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQT 264

Query: 503 HLSENNL 509
            L E +L
Sbjct: 265 DLLEIDL 271

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 44/268 (16%), Positives = 83/268 (30%), Gaps = 36/268 (13%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG-ELTGLIPSLAW 101
               +   T ++ L+ S N     +         LL  ++   N+++  +L   I     
Sbjct: 162 TKLDVTPQTQLTTLDCSFNK----ITELDVSQNKLLNRLNCDTNNITKLDLNQNI----- 212

Query: 102 NHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSL 161
                 +  LD S N  +  +   +   ++L  F     N L  L       + L     
Sbjct: 213 -----QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV-NPLTELDVSTL--SKLTTLHC 261

Query: 162 HFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSS 221
               L      D+ + T L+  +      I  +  D+   T L  L      ++  L  S
Sbjct: 262 IQTDLL---EIDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELDLS 315

Query: 222 MMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALR 281
                 L  L L        L+  + S  ++L+++             ++     L    
Sbjct: 316 --QNPKLVYLYLNNT----ELTELDVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNF 367

Query: 282 LACNQLEGQIPPEIIKLKSLILMGCKNL 309
            A  Q    +P E +   SL +    +L
Sbjct: 368 EAEGQTI-TMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 18/181 (9%)

Query: 336 QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395
            N  +   A  ++     +   +L  L  L    + IT  + G    L  L     + NN
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75

Query: 396 ISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRP-------T 448
           I+     + + L  L  + NK      +L           +   N++  L          
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKLT----NLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131

Query: 449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENN 508
           +  A N+L+     +      L  LD   N     +   ++  T L  LD S N ++E +
Sbjct: 132 LNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD 186

Query: 509 L 509
           +
Sbjct: 187 V 187

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 97.2 bits (242), Expect = 1e-21
 Identities = 88/473 (18%), Positives = 157/473 (33%), Gaps = 68/473 (14%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
            I +L+ +  L +SHN +   L I+ F F   LE +DLS+N L       I      H  
Sbjct: 40  DILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLVK-----ISC----HPT 89

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
            +++ LD S+N F +   P       +                       L+   L    
Sbjct: 90  VNLKHLDLSFNAFDAL--PICKEFGNMSQ---------------------LKFLGLSTTH 126

Query: 166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNC 225
           L       I +L    VL +  +        D   L +     L+    +      +++ 
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 226 TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285
           +     NL  +     L     +  S   +I   +        LTL +        +   
Sbjct: 185 SVKTVANLELSNIKCVL---EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241

Query: 286 QLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNY--------DQNKISDGFQN 337
           QL          + ++ L G  +      +   +   + +          Q+ I + F N
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 338 LRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397
           +   +           L  SK++    L  S N +T ++    G+L  L    L  N + 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 398 -----GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLA 452
                 E   ++  LQ L I QN  + ++            + S            + ++
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC-----SWTKSLLS---------LNMS 407

Query: 453 NNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505
           +N L+  I         + VLDL +N    SIP Q+ +L  L+ L+++ N L 
Sbjct: 408 SNILTDTIF--RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.0 bits (179), Expect = 7e-14
 Identities = 60/400 (15%), Positives = 132/400 (33%), Gaps = 35/400 (8%)

Query: 36  NKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGL 95
           N           GN++ +  L LS  H    L  +S   +  L I  +            
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTH----LEKSSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 96  IPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLK------SFQAGYSNLLRSLPDD 149
            P    + +  S+ ++  +  +F   +   +   + L+        +    +   S+   
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215

Query: 150 IYAAASLEEPSLHFNKLSGFISNDI---INLTSLLVLELYSKELIGSIPRDIG-----KL 201
           +     L   +L+  + +      I   +  T++    + + +L G +           L
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275

Query: 202 TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
             L    +  +             +N+   N   +     +     S +S    +D   N
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS-GTRMVHMLCPSKISPFLHLDFSNN 334

Query: 262 MFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNE 321
           + T +          L  L L  NQL+ ++         +     K+L  L ++ N ++ 
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQM-----KSLQQLDISQNSVSY 388

Query: 322 ATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFG 381
                         ++L +++++   LT  +   L    +++VL L  N+I  SIP    
Sbjct: 389 DEK----KGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVV 441

Query: 382 NLPSLFYFALSQNN---ISGEFPKELSRLQPLVIEQNKFN 418
            L +L    ++ N    +       L+ LQ + +  N ++
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 63/389 (16%), Positives = 121/389 (31%), Gaps = 55/389 (14%)

Query: 178 TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNL 237
               +L +    +      DI  L+ L+ L++  N +     S       L+ L+L  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN- 79

Query: 238 FAGNLSAYNFSVLSQLETIDLYINMFT----GSFLLTLTSCRLLTALRLACNQLEGQIPP 293
               L   +      L+ +DL  N F           ++    L  L L+   LE     
Sbjct: 80  ---KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ---LKFLGLSTTHLEKSSVL 133

Query: 294 EIIKLKSLILMGC--------------KNLNVLFLTMNFMNEATPNYDQNKISDGFQNLR 339
            I  L    ++                ++ N   L + F      ++  +       NL 
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 340 AVSLAG------CQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP---SLFYFA 390
             ++        C     +   L    KL  L L+  + T +       L    +++YF+
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 391 LSQNNISGEFPKELSRLQPLVIEQNKFNRNK-------PDLPFFLFPNQNSTSHQYNRIF 443
           +S   + G+            ++    ++             + +F N N  +   +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 444 GLRPTIF----------LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQIS---Q 490
            +                +NN L+  +    G L  L  L L  N     +        Q
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQ 372

Query: 491 LTILERLDLSKNHLSENNLQGPIPSGGQL 519
           +  L++LD+S+N +S +  +G       L
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.3 bits (242), Expect = 2e-21
 Identities = 64/330 (19%), Positives = 111/330 (33%), Gaps = 70/330 (21%)

Query: 177 LTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGN 236
                VL +    L  ++P  +    ++  L++  NNL+ SLP+       L+TL + GN
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALP---PELRTLEVSGN 91

Query: 237 LFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEII 296
               +L       L +L      +                L  L +  NQL   +P    
Sbjct: 92  QLT-SLPV-LPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLPVLPP 141

Query: 297 KLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL 356
            L+ L +   +                       +      L  +     QLT  +P+  
Sbjct: 142 GLQELSVSDNQ--------------------LASLPALPSELCKLWAYNNQLT-SLPMLP 180

Query: 357 SKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNK 416
           S L +L    +S NQ+  S+P     L  L+      N ++   P   S L+ L++  N+
Sbjct: 181 SGLQELS---VSDNQLA-SLPTLPSELYKLW---AYNNRLT-SLPALPSGLKELIVSGNR 232

Query: 417 FNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLG 476
                  LP                   L+  + ++ N L+  +P     L     L + 
Sbjct: 233 LTS----LP--------------VLPSELK-ELMVSGNRLT-SLPMLPSGLL---SLSVY 269

Query: 477 NNNFAGSIPNQISQLTILERLDLSKNHLSE 506
            N     +P  +  L+    ++L  N LSE
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.5 bits (240), Expect = 3e-21
 Identities = 75/361 (20%), Positives = 127/361 (35%), Gaps = 65/361 (18%)

Query: 50  LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMR 109
               + LN+  + +   LP      +T L    +  N+L+  L  L P L         R
Sbjct: 39  NNGNAVLNVGESGLTT-LPDCLPAHITTL---VIPDNNLT-SLPALPPEL---------R 84

Query: 110 LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF 169
            L+ S N  +S +P        L  F       L +LP        L +  +  N+L+  
Sbjct: 85  TLEVSGNQLTS-LPVLPPGLLELSIFSNPL-THLPALPS------GLCKLWIFGNQLT-S 135

Query: 170 ISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK 229
           +      L  L V    S   + S+P    +L  L     Y N L+ SLP      + L+
Sbjct: 136 LPVLPPGLQELSV----SDNQLASLPALPSELCKLW---AYNNQLT-SLPMLP---SGLQ 184

Query: 230 TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289
            L++  N  A +L      + S+L  +  Y N  T S     +    L  L ++ N+L  
Sbjct: 185 ELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPALPSG---LKELIVSGNRLT- 234

Query: 290 QIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLT 349
            +P    +LK L++ G +      LT               +      L ++S+   QLT
Sbjct: 235 SLPVLPSELKELMVSGNR------LT--------------SLPMLPSGLLSLSVYRNQLT 274

Query: 350 GQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQP 409
            ++P  L  L+    + L GN ++         + S   ++                 + 
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333

Query: 410 L 410
           L
Sbjct: 334 L 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 6e-20
 Identities = 69/410 (16%), Positives = 119/410 (29%), Gaps = 83/410 (20%)

Query: 74  FLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLK 133
                 ++++  + L+  L   +P+         +  L    N+ +S +P        L+
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPA--------HITTLVIPDNNLTS-LPALPPELRTLE 87

Query: 134 SFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGS 193
                  N L SLP        L   S     L    S        L  L ++  +L  S
Sbjct: 88  V----SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-S 135

Query: 194 IPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQL 253
           +P        L+ L +  N L+ SLP+     + L  L    N               QL
Sbjct: 136 LPVLPP---GLQELSVSDNQLA-SLPALP---SELCKLWAYNN---------------QL 173

Query: 254 ETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCK------ 307
            ++ +  +               L  L ++ NQL   +P    +L  L     +      
Sbjct: 174 TSLPMLPSG--------------LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPA 218

Query: 308 ---NLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEV 364
               L  L ++ N +           +      L+ + ++G +LT  +P+  S L  L  
Sbjct: 219 LPSGLKELIVSGNRLTS---------LPVLPSELKELMVSGNRLT-SLPMLPSGLLSLS- 267

Query: 365 LLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDL 424
             +  NQ+T  +P    +L S     L  N +S E   +  R        +         
Sbjct: 268 --VYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMA 323

Query: 425 PFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLD 474
                    +                 A          E     F   LD
Sbjct: 324 GASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLD 373

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 2e-19
 Identities = 63/358 (17%), Positives = 117/358 (32%), Gaps = 70/358 (19%)

Query: 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNL 214
                ++  + L+  + + +     +  L +    L  S+P    +L  L+   +  N L
Sbjct: 41  GNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLE---VSGNQL 93

Query: 215 SGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSC 274
           + SLP        L   +               ++ S L  + ++ N  T S  +     
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLT-SLPVLPPG- 142

Query: 275 RLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG 334
             L  L ++ NQL   +P    +L  L     +      LT               +   
Sbjct: 143 --LQELSVSDNQLA-SLPALPSELCKLWAYNNQ------LT--------------SLPML 179

Query: 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
              L+ +S++  QL   +P   S+L KL       N++T S+P     L  L    +S N
Sbjct: 180 PSGLQELSVSDNQLA-SLPTLPSELYKLW---AYNNRLT-SLPALPSGLKELI---VSGN 231

Query: 395 NISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANN 454
            ++   P   S L+ L++  N+       LP                  GL  ++ +  N
Sbjct: 232 RLT-SLPVLPSELKELMVSGNRLT----SLP--------------MLPSGLL-SLSVYRN 271

Query: 455 SLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGP 512
            L+ R+P     L     ++L  N  +      + ++T                   P
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 67/327 (20%), Positives = 110/327 (33%), Gaps = 62/327 (18%)

Query: 45  PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIP-SLAWNH 103
                L     L +S N +   LP      L  L I       L    +GL    +  N 
Sbjct: 78  ALPPELRT---LEVSGNQLTS-LP-VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ 132

Query: 104 ------SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLE 157
                     ++ L  S N  +S +P       +L +    Y+N L SLP      + L+
Sbjct: 133 LTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWA----YNNQLTSLPMLP---SGLQ 184

Query: 158 EPSLHFNKLSGFISNDIINLTSLLVLELYSKEL----------------IGSIPRDIGKL 201
           E S+  N+L+  +      L  L         L                + S+P    +L
Sbjct: 185 ELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSEL 243

Query: 202 TNL-----------------KYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSA 244
             L                   L +YRN L+  LP S+++ ++  T+NL GN     LS 
Sbjct: 244 KELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN----PLSE 298

Query: 245 YNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQ-LEGQIPPEIIKLKSLIL 303
                L ++ +   Y        +   ++ R   AL LA    L      E        +
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358

Query: 304 MG-CKNLNVLFLTMNFMNEATPNYDQN 329
            G   N +   L ++ ++E T N+ ++
Sbjct: 359 FGQEDNADAFSLFLDRLSE-TENFIKD 384

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.9 bits (241), Expect = 2e-21
 Identities = 76/470 (16%), Positives = 152/470 (32%), Gaps = 45/470 (9%)

Query: 42  YHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAW 101
           Y       L +   +   ++ +   LP         +E+++L+   +    T        
Sbjct: 42  YFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH- 99

Query: 102 NHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPS 160
                +++ L   +N      P    N   L        N L SLP  I+     L   S
Sbjct: 100 -----TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLS 153

Query: 161 LHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS 220
           +  N L     +     TSL  L+L S   +  +   +  + +L +  +  N L     S
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLL-----S 205

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280
           ++     ++ L+   N    +++     V  +L  + L  N  T      L +   L  +
Sbjct: 206 TLAIPIAVEELDASHN----SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEV 259

Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
            L+ N+LE +I            +  + L  L+++ N +         N        L+ 
Sbjct: 260 DLSYNELE-KIMYH-------PFVKMQRLERLYISNNRLVAL------NLYGQPIPTLKV 305

Query: 341 VSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEF 400
           + L+   L   V     +  +LE L L  N I  ++        +L    LS N+     
Sbjct: 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNS 361

Query: 401 PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRI 460
            + L R     + +   +                   + ++ +  R   ++A  S+  ++
Sbjct: 362 LRALFR----NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKV 417

Query: 461 PAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQ 510
               G+    + ++   +            L   E+L+   N L     Q
Sbjct: 418 QRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.5 bits (240), Expect = 3e-21
 Identities = 54/367 (14%), Positives = 114/367 (31%), Gaps = 47/367 (12%)

Query: 143 LRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKL 201
            + +  ++       +  +       +   + I L +  ++   +   +  +P  +    
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSF 74

Query: 202 TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
             ++ L L    +      +      ++ L +  N     L  + F  +  L  + L  N
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 133

Query: 262 MFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNE 321
             +        +   LT L ++ N LE        +++        +L  L L+ N +  
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLE--------RIEDDTFQATTSLQNLQLSSNRLTH 185

Query: 322 ATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFG 381
              +           +L   +++   L+      L+    +E L  S N I         
Sbjct: 186 VDLS--------LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNV 232

Query: 382 NLPSLFYFALSQNNIS--GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQY 439
            L  L    L  NN++           L  + +  N+       + +  F          
Sbjct: 233 ELTILK---LQHNNLTDTAWL-LNYPGLVEVDLSYNELE----KIMYHPFVKMQR----- 279

Query: 440 NRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDL 499
                L   ++++NN L   +      +  L VLDL +N+    +     Q   LE L L
Sbjct: 280 -----LE-RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 500 SKNHLSE 506
             N +  
Sbjct: 332 DHNSIVT 338

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.4 bits (237), Expect = 8e-21
 Identities = 65/449 (14%), Positives = 135/449 (30%), Gaps = 100/449 (22%)

Query: 75  LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKS 134
                  D+  +  + ++      +    +  + +++ F  +         L +  +++ 
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDI----TLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 135 FQAGYSNLLRSLPDDIYA-AASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGS 193
                   +  +    +A A ++++  + FN +     +   N+  L VL L  +  + S
Sbjct: 80  LNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL-ERNDLSS 137

Query: 194 IPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
           +PR I      L  L +  NNL      +    T+L+ L L  N     L+  + S++  
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHVDLSLIPS 193

Query: 253 LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312
           L   ++  N+ +     TL     +  L  + N +   +   +                 
Sbjct: 194 LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV----------------- 230

Query: 313 FLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQI 372
                                    L  + L    LT     WL     L  + LS N++
Sbjct: 231 ----------------------NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNEL 266

Query: 373 TGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQ 432
              +   F  +  L    +S N +          +  L                      
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK--------------------- 304

Query: 433 NSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLT 492
                           + L++N L   +     Q   L  L L +N+   ++   +S   
Sbjct: 305 ---------------VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHH 345

Query: 493 ILERLDLSKNHLSENNLQGPIPSGGQLHT 521
            L+ L LS N    N+L+    +  +   
Sbjct: 346 TLKNLTLSHNDWDCNSLRALFRNVARPAV 374

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 30/233 (12%)

Query: 306 CKNLNVLFLTM---NFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKL 362
           C + N+ +  +     ++  T +           N + V+     +       L    ++
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 363 EVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS---GEFPKELSRLQPLVIEQNKFNR 419
           E+L L+  QI       F    ++    +  N I        + +  L  LV+E+N  + 
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 420 NKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ-LKFLNVLDLGNN 478
               LP  +F N             L  T+ ++NN+L  RI  +T Q    L  L L +N
Sbjct: 138 ----LPRGIFHNTPK----------LT-TLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 181

Query: 479 NFAGSIPNQISQLTILERLDLSKNHLSE----NNLQGPIPSGGQLHTFPPSSF 527
                +   +S +  L   ++S N LS       ++    S   ++       
Sbjct: 182 RLT-HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.5 bits (225), Expect = 3e-20
 Identities = 65/285 (22%), Positives = 94/285 (32%), Gaps = 45/285 (15%)

Query: 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKEL--IGSIPRD 197
           S  L S+P  I   +S     L  NKL          LT L  L L S  L   G   + 
Sbjct: 16  SKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73

Query: 198 IGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID 257
               T+LKYL L  N +  ++ S+ +    L+ L+   +          F  L  L  +D
Sbjct: 74  DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 258 LYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317
           +       +F         L  L++A N  +    P+I           +NL  L L+  
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-------FTELRNLTFLDLSQC 185

Query: 318 FMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP 377
                               L  +S          P   + L+ L+VL +S N       
Sbjct: 186 -------------------QLEQLS----------PTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 378 GWFGNLPSLFYFALSQNNIS----GEFPKELSRLQPLVIEQNKFN 418
             +  L SL     S N+I      E     S L  L + QN F 
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 47/224 (20%), Positives = 80/224 (35%), Gaps = 22/224 (9%)

Query: 49  NLTHISHLNLSHNHV-HGPLPINSFHFLTLLEIIDLSYN---SLSGELTGLIPSLAWNHS 104
            LT ++ L+LS N +        S    T L+ +DLS+N   ++S    GL   L     
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-EQL----- 103

Query: 105 FCSMRLLDFSYNDFSSQVPPRL-GNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLH 162
                 LDF +++        +  +   L      +    R   + I+   +SLE   + 
Sbjct: 104 ----EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMA 158

Query: 163 FNKLSGFISNDI-INLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPS 220
            N        DI   L +L  L+L S+  +  +       L++L+ L +  NN       
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNF-SVLSQLETIDLYINMF 263
                 +L+ L+   N               S L  ++L  N F
Sbjct: 218 PYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 50/236 (21%), Positives = 82/236 (34%), Gaps = 36/236 (15%)

Query: 277 LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQ 336
            T L L  N+L+         L   +      L  L L+ N ++        +    G  
Sbjct: 30  ATRLELESNKLQ--------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD---FGTT 78

Query: 337 NLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP--GWFGNLPSLFYFALSQN 394
           +L+ + L+   +   +      L +LE L    + +   +     F +L +L Y  +S  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT 136

Query: 395 NIS----GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIF 450
           +      G F   LS L+ L +  N F  N     F    N             L   + 
Sbjct: 137 HTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRN-------------LT-FLD 181

Query: 451 LANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505
           L+   L  ++       L  L VL++ +NNF          L  L+ LD S NH+ 
Sbjct: 182 LSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 47/267 (17%), Positives = 76/267 (28%), Gaps = 61/267 (22%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
           +  + L L  N +   LP   F  LT L  + LS N LS        S +      S++ 
Sbjct: 28  SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLS---FKGCCSQSD-FGTTSLKY 82

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
           LD S+N                          + ++  +      LE      + L    
Sbjct: 83  LDLSFNG-------------------------VITMSSNFLGLEQLEHLDFQHSNLKQMS 117

Query: 171 SNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKT 230
              +                          L NL YL +   +   +        ++L+ 
Sbjct: 118 EFSVFL-----------------------SLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 231 LNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQ 290
           L + GN F  N     F+ L  L  +DL              S   L  L ++ N     
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-S 213

Query: 291 IPPEIIKLKSLILMGCKNLNVLFLTMN 317
           +                +L VL  ++N
Sbjct: 214 LDTF-------PYKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 13/195 (6%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
             T + +L+LS N V   +  ++F  L  LE +D  +++L       +   +   S  ++
Sbjct: 76  GTTSLKYLDLSFNGVIT-MS-SNFLGLEQLEHLDFQHSNLKQ-----MSEFSVFLSLRNL 128

Query: 109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLS 167
             LD S+              S L+  +   ++   +   DI+    +L    L   +L 
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 168 GFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMN-- 224
                   +L+SL VL +       S+       L +L+ L    N++  +     +   
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHF 246

Query: 225 CTNLKTLNLMGNLFA 239
            ++L  LNL  N FA
Sbjct: 247 PSSLAFLNLTQNDFA 261

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.9 bits (223), Expect = 4e-19
 Identities = 84/464 (18%), Positives = 142/464 (30%), Gaps = 60/464 (12%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
            L+ +  L LSHN +   L  + F F   LE +D+S+N L       I          S+
Sbjct: 74  FLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQN-----ISC----CPMASL 123

Query: 109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGY--SNLLRSLPDDIYAAASLEEPSLHF--N 164
           R LD S+NDF     P       L         +   R L     A   L    L     
Sbjct: 124 RHLDLSFNDFDV--LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181

Query: 165 KLSGFISNDIINL-TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMM 223
            + G  +  +    T++L L  +   L          +  L +L L    L         
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS--VNALGHLQLSNIKL--------- 230

Query: 224 NCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLA 283
           N  N + L    +      +  N ++     T    + +F   +   +        L + 
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY------LNIY 284

Query: 284 CNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSL 343
              +  +I  E        L   K+L +  +           + +  +   F  +    L
Sbjct: 285 NLTITERIDREEFTYSETAL---KSLMIEHVKNQVFL-----FSKEALYSVFAEMNIKML 336

Query: 344 AGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS--GEFP 401
           +         +     +    L  + N  T S+      L  L    L +N +    +  
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

Query: 402 KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIP 461
                +  L       N               S                L++N L+G + 
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN-----------LSSNMLTGSVF 445

Query: 462 AE-TGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHL 504
                ++K   VLDL NN    SIP  ++ L  L+ L+++ N L
Sbjct: 446 RCLPPKVK---VLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 69/371 (18%), Positives = 116/371 (31%), Gaps = 23/371 (6%)

Query: 139 YSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI 198
            +  L  +P D+      +  SL  N +S     DI  L+ L VL L    +  S+   +
Sbjct: 39  SNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHV 95

Query: 199 -GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID 257
                +L+YL +  N L  ++    M   +L+ L+L  N F        F  L++L  + 
Sbjct: 96  FLFNQDLEYLDVSHNRLQ-NISCCPM--ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152

Query: 258 LYINMFTGSFLLTLTSCRLLT-ALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM 316
           L    F    LL +    L    L L    ++G     +    + +L    + N LF   
Sbjct: 153 LSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212

Query: 317 NFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSI 376
             M+     + Q        N++       +L   +       T L V L          
Sbjct: 213 VNMSVNALGHLQ------LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 377 PGWFGNL--PSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNS 434
              F       + Y  +    I+    +E        ++       K  +  F      S
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 435 TSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTIL 494
                  +F       L+ +                  L+   N F  S+    S L  L
Sbjct: 327 -------VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 495 ERLDLSKNHLS 505
           + L L +N L 
Sbjct: 380 QTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 65/401 (16%), Positives = 136/401 (33%), Gaps = 36/401 (8%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
           S   +  + HL+LS N          F  LT L  + LS           +  L  +   
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
             +        +  S    ++ N + L       S     +   + A   L+  ++  N 
Sbjct: 176 LDLVSYHIKGGETESL---QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 166 LSGF----ISNDIINLTSLLVLELYSKELIGSIPRDIGKL---TNLKYLLLYRNNLSGSL 218
            +        +++    +LL + L   E        + +      ++YL +Y   ++  +
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292

Query: 219 PSSMMNCTNLKTLNLMGNLFAGNLSAYN----FSVLSQLETIDLYINMFTGSFLLTLTSC 274
                  +     +LM       +  ++    +SV +++    L I+      ++   S 
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP 352

Query: 275 RLLTALRLACNQLEGQIPPEIIKLKSLILMGCK---------------NLNVLFLTMNFM 319
              T L    N     +      LK L  +  +               N++ L      +
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412

Query: 320 NEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW 379
           N +  ++  ++     +++  ++L+   LTG V   L    K++VL L  N+I  SIP  
Sbjct: 413 N-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKD 468

Query: 380 FGNLPSLFYFALSQNN---ISGEFPKELSRLQPLVIEQNKF 417
             +L +L    ++ N    +       L+ LQ + +  N +
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 52/366 (14%), Positives = 112/366 (30%), Gaps = 44/366 (12%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
            +P+D+      K L L +N++S      +   + L+ L L  N    +L  + F     
Sbjct: 45  HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101

Query: 253 LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEII---------------K 297
           LE +D+  N         + S   L  L L+ N  +  +P                   K
Sbjct: 102 LEYLDVSHNRLQNISCCPMAS---LRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAK 157

Query: 298 LKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQL-TGQVPLWL 356
            + L L+   +L++  + ++ ++      +   +      +  +      L + QV + +
Sbjct: 158 FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217

Query: 357 SKLTKLEVLLLSGNQITG----SIPGWFGNLPSLFYFALSQNNISGE-FPKELSRLQPLV 411
           + L  L++  +  N        +        P+L    L     + +   K      P  
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277

Query: 412 IEQNKFNRNK-PDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFL 470
           +E          +         + T+ +   I  ++      N        A       +
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK------NQVFLFSKEALYSVFAEM 331

Query: 471 NVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSE---------NNLQGPIPSGGQLHT 521
           N+  L  ++            +    L+ ++N  ++           LQ  I     L  
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391

Query: 522 FPPSSF 527
           F   + 
Sbjct: 392 FFKVAL 397

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 67/347 (19%), Positives = 108/347 (31%), Gaps = 65/347 (18%)

Query: 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI- 198
              L  +P D+          L  NK++     D  NL +L  L L     I  I     
Sbjct: 40  DLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISPGAF 96

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL 258
             L  L+ L L +N L   LP  M     L+ L +  N     +    F+ L+Q+  ++L
Sbjct: 97  APLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVEL 152

Query: 259 YINMFTGSFL--LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM 316
             N    S +        + L+ +R+A   +   IP  +                     
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--------------------- 190

Query: 317 NFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSI 376
                               +L  + L G ++T      L  L  L  L LS N I+   
Sbjct: 191 ------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232

Query: 377 PGWFGNLPSLFYFALSQNNIS---GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQN 433
            G   N P L    L+ N +    G    +   +Q + +  N  +    +       N  
Sbjct: 233 NGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 434 STSHQYNRIFGLRPTIFLANNSLS-GRIPAET-GQLKFLNVLDLGNN 478
             S+           + L +N +    I   T   +     + LGN 
Sbjct: 292 KASYSG---------VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 60/349 (17%), Positives = 114/349 (32%), Gaps = 76/349 (21%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
              + L+L +N +   +    F  L  L  + L  N +                      
Sbjct: 52  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKI---------------------- 88

Query: 111 LDFSYNDFSSQVPPR-LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF 169
                    S++ P       +L+       N L+ LP+      +L+E  +H N+++  
Sbjct: 89  ---------SKISPGAFAPLVKLERLYL-SKNQLKELPEK--MPKTLQELRVHENEITKV 136

Query: 170 ISNDIINLTSLLVLELYSKEL-IGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTN 227
             +    L  ++V+EL +  L    I       +  L Y+ +   N++ ++P  +    +
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PS 193

Query: 228 LKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQL 287
           L  L+L GN     + A +   L+ L  + L  N  +     +L +   L  L L  N+L
Sbjct: 194 LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 288 EGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQ 347
             ++P          L   K + V++L              N IS     + +       
Sbjct: 253 V-KVPGG--------LADHKYIQVVYL------------HNNNIS----AIGSNDFCP-- 285

Query: 348 LTGQVPLWLSKLTKLEVLLLSGNQITGSI--PGWFGNLPSLFYFALSQN 394
                P + +K      + L  N +      P  F  +       L   
Sbjct: 286 -----PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 54/329 (16%), Positives = 104/329 (31%), Gaps = 70/329 (21%)

Query: 203 NLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM 262
           +L+ +      L   +P  +    +   L+L  N     +   +F  L  L T+ L  N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 263 FTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEA 322
            +            L  L L+ NQL+ ++P ++                           
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--------------------------- 119

Query: 323 TPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSI--PGWF 380
                        + L+ + +   ++T       + L ++ V+ L  N +  S    G F
Sbjct: 120 ------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 381 GNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH--- 437
             +  L Y  ++  NI+         L  L ++ NK  +    +        N+ +    
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK----VDAASLKGLNNLAKLGL 223

Query: 438 QYNRIFGLRPTIF----------LANNSLSGRIPAETGQLKFLNVLDLGNNNF------A 481
            +N I  +               L NN L  ++P      K++ V+ L NNN        
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 482 GSIPNQISQLTILERLDLSKNHLSENNLQ 510
              P   ++      + L  N +    +Q
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 53/291 (18%), Positives = 91/291 (31%), Gaps = 25/291 (8%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
           SIP  +     +K L L  N ++    S +  C NL+ L L  N     +   +FS L  
Sbjct: 45  SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGS 101

Query: 253 LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312
           LE +DL  N  +            LT L L  N  +  +        + +      L +L
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE------TSLFSHLTKLQIL 154

Query: 313 FLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQI 372
            +               K   G   L  + +    L    P  L  +  +  L+L   Q 
Sbjct: 155 RVGNMDTFTKIQR----KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 373 TGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQ 432
              +  +     S+    L   ++      ELS  +   + +    RN       +    
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN-------VKITD 263

Query: 433 NSTSHQYNRIFGLRP--TIFLANNSLSGRIPAET-GQLKFLNVLDLGNNNF 480
            S       +  +     +  + N L   +P     +L  L  + L  N +
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 60/347 (17%), Positives = 107/347 (30%), Gaps = 88/347 (25%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
             +  L+LS+N +   +  +       L+ + L+ N ++      I   +++    S+  
Sbjct: 52  EAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGIN-----TIEEDSFSS-LGSLEH 104

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
           LD SYN               L +  +      + L        SL   +L  N      
Sbjct: 105 LDLSYN--------------YLSNLSSS---WFKPLS-------SLTFLNLLGNPYKTLG 140

Query: 171 SNDI-INLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTNL 228
              +  +LT L +L + + +    I R     LT L+ L +  ++L    P S+ +  N+
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 229 KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE 288
             L L        L      V S +E                         L L    L+
Sbjct: 201 SHLILHMKQHI-LLLEIFVDVTSSVEC------------------------LELRDTDLD 235

Query: 289 GQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQL 348
                E+   ++  L+       + +T   + +                           
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--------------------------- 268

Query: 349 TGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395
              V   L++++ L  L  S NQ+     G F  L SL    L  N 
Sbjct: 269 ---VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 38/228 (16%), Positives = 87/228 (38%), Gaps = 21/228 (9%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
              ++  L L+ N ++  +  +SF  L  LE +DLSYN LS   +     L+      S+
Sbjct: 74  RCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS------SL 126

Query: 109 RLLDFSYNDFSSQVPPRL-GNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKL 166
             L+   N + +     L  + ++L+  + G  +    +    +A    LEE  +  + L
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 167 SGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSG----SLPS- 220
             +    + ++ ++  L L+ K+    +        ++++ L L   +L       L + 
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 221 ---SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265
              S++     + + +        +     + +S L  ++   N    
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 20/193 (10%)

Query: 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
            + ++++ L+  ++T      L +   L+ L+L+ N I       F +L SL +  LS N
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 395 NIS----GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYN-RIFGLRPTI 449
            +S      F   LS L  L +  N +        F                   ++   
Sbjct: 111 YLSNLSSSWFKP-LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 450 F----------LANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQI-SQLTILERL 497
           F          +  + L      ++   ++ ++ L L        +        + +E L
Sbjct: 170 FAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227

Query: 498 DLSKNHLSENNLQ 510
           +L    L   +  
Sbjct: 228 ELRDTDLDTFHFS 240

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 42/287 (14%), Positives = 83/287 (28%), Gaps = 71/287 (24%)

Query: 277 LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKIS---- 332
           + +L L+ N++          + +  L  C NL  L L              N I+    
Sbjct: 54  VKSLDLSNNRIT--------YISNSDLQRCVNLQALVL------------TSNGINTIEE 93

Query: 333 ---DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP--GWFGNLPSLF 387
                  +L  + L+   L+     W   L+ L  L L GN    ++     F +L  L 
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ 152

Query: 388 YFALSQNN----ISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH---QYN 440
              +   +    I  +    L+ L+ L I+ +               +  + SH      
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS----YEPKSLKSIQNVSHLILHMK 208

Query: 441 RIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQIS--------QLT 492
           +   L                        +  L+L + +      +++S        +  
Sbjct: 209 QHILLLEIFV--------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 493 ILERLDLSKNHLSE--------NNLQGPIPSGGQLHTFPPSSFEGNP 531
               + ++   L +        + L     S  QL + P   F+   
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 4e-17
 Identities = 56/396 (14%), Positives = 122/396 (30%), Gaps = 42/396 (10%)

Query: 139 YSNLLRSLPDDIYAAAS----LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSI 194
           + N +     D ++A         P  + N+    +      +     L+L    L  S+
Sbjct: 18  FYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNL-SSL 74

Query: 195 PRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLE 254
           P ++     +  L + +N L  SLP       +L+ L+   N  +  L      + + L+
Sbjct: 75  PDNLPP--QITVLEITQNALI-SLPELP---ASLEYLDACDNRLS-TLPE----LPASLK 123

Query: 255 TIDLYINMFTGSFLLTL-TSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCK------ 307
            +D+  N  T      L     LL  +    NQL   +P     L+ L +   +      
Sbjct: 124 HLDVDNNQLT-----MLPELPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTFLPE 177

Query: 308 ---NLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEV 364
              +L  L ++ N +        +N  S+  +          ++T  +P  +  L     
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVRNHHSE--ETEIFFRCRENRIT-HIPENILSLDPTCT 234

Query: 365 LLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKF-----NR 419
           ++L  N ++  I        +   +   +   S    ++ +  +PL      +       
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

Query: 420 NKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNN 479
           +   +       +++ +                 +    ++ A   +L     L   +  
Sbjct: 295 DVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFA 354

Query: 480 FAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPS 515
            A            L   +L K  L     +G   +
Sbjct: 355 VAADATESCEDRVALTWNNLRKTLLVHQASEGLFDN 390

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.3 bits (203), Expect = 1e-16
 Identities = 57/320 (17%), Positives = 100/320 (31%), Gaps = 47/320 (14%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
           SI   I    +L     Y N +SG+           +   L G      +S     +++Q
Sbjct: 2   SIMLPINNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 253 LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312
              + L     +    L       +T L +  N L   +P     L+ L        N L
Sbjct: 61  FSELQLNRLNLSS---LPDNLPPQITVLEITQNALI-SLPELPASLEYLDACD----NRL 112

Query: 313 FLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQI 372
                           + + +   +L+ + +   QLT  +P        LE +    NQ+
Sbjct: 113 ----------------STLPELPASLKHLDVDNNQLT-MLP---ELPALLEYINADNNQL 152

Query: 373 TGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQ 432
           T  +P    +L  L    +  N ++   P+    L+ L +  N        LP     N 
Sbjct: 153 T-MLPELPTSLEVLS---VRNNQLT-FLPELPESLEALDVSTNLLES----LPAVPVRNH 203

Query: 433 NSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLT 492
           +S                   N ++  IP     L     + L +N  +  I   +SQ T
Sbjct: 204 HSEE--------TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 493 ILERLDLSKNHLSENNLQGP 512
                   + + S ++ Q  
Sbjct: 255 AQPDYHGPRIYFSMSDGQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 9e-15
 Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 46/237 (19%)

Query: 44  LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNH 103
           L     +   S L L+  ++   LP N       + +++++ N+L       +P      
Sbjct: 52  LLKECLINQFSELQLNRLNLSS-LPDN---LPPQITVLEITQNALIS-----LPE----- 97

Query: 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
              S+  LD   N  S+ +P    +   L       +N L  LP+     A LE  +   
Sbjct: 98  LPASLEYLDACDNRLST-LPELPASLKHLDV----DNNQLTMLPELP---ALLEYINADN 149

Query: 164 NKLSGFISNDIINLTSLLVLELYSKEL----------------IGSIPRDIGKLTNLKYL 207
           N+L+  +     +L  L V       L                + S+P    +  + +  
Sbjct: 150 NQLT-MLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEET 208

Query: 208 LLY---RNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
            ++   R N    +P ++++     T+ L  N     LS+     LSQ      Y  
Sbjct: 209 EIFFRCRENRITHIPENILSLDPTCTIILEDN----PLSSRIRESLSQQTAQPDYHG 261

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 5e-17
 Identities = 50/265 (18%), Positives = 86/265 (32%), Gaps = 37/265 (13%)

Query: 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI- 198
              L  +P  I +  +    +L  N +    ++   +L  L VL+L  +  I  I     
Sbjct: 63  RRGLSEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQL-GRNSIRQIEVGAF 119

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSM-MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID 257
             L +L  L L+ N L+  +PS      + L+ L L  N    ++ +Y F+ +  L  +D
Sbjct: 120 NGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLD 177

Query: 258 LY-INMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM 316
           L  +                L  L L    ++  +P          L     L  L +  
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN---------LTPLVGLEELEM-- 225

Query: 317 NFMNEATPNYDQNKIS-------DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSG 369
                       N           G  +L+ + +   Q++         L  L  L L+ 
Sbjct: 226 ----------SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 370 NQITGSIPGWFGNLPSLFYFALSQN 394
           N ++      F  L  L    L  N
Sbjct: 276 NNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 8e-17
 Identities = 68/296 (22%), Positives = 110/296 (37%), Gaps = 69/296 (23%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
            +P+ I   +N +YL L  NN+      +  +  +L+ L L  N     +    F+ L+ 
Sbjct: 68  EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 253 LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312
           L T++L+ N  T            L  L L  N +E  IP               +L  L
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA-------FNRVPSLMRL 176

Query: 313 FLTMNFMNEATPNYDQNKIS-------DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVL 365
            L            +  K+        +G  NL+ ++L  C +   +P  L+ L  LE L
Sbjct: 177 DL-----------GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEEL 223

Query: 366 LLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLP 425
            +SGN      PG F  L SL    +  + +S             +IE+N F+     L 
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-------------LIERNAFD----GLA 266

Query: 426 FFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET-GQLKFLNVLDLGNNNF 480
                              L   + LA+N+LS  +P +    L++L  L L +N +
Sbjct: 267 ------------------SLV-ELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 46/222 (20%), Positives = 81/222 (36%), Gaps = 23/222 (10%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS----GELTGLIPSLAWNHS 104
           +L H+  L L  N +   + + +F+ L  L  ++L  N L+    G    L   L     
Sbjct: 97  HLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL-SKL----- 149

Query: 105 FCSMRLLDFSYNDFSSQVPPR-LGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLH 162
               R L    N   S +P         L     G    L  + +  +    +L+  +L 
Sbjct: 150 ----RELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRD-IGKLTNLKYLLLYRNNLSGSLPSS 221
              +      ++  L  L  LE+ S      I       L++LK L +  + +S    ++
Sbjct: 205 MCNIKDM--PNLTPLVGLEELEM-SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 222 MMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMF 263
                +L  LNL  N  + +L    F+ L  L  + L+ N +
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 59/272 (21%), Positives = 96/272 (35%), Gaps = 51/272 (18%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS----GELTGLIPSLAWNHSFC 106
           ++  +LNL  N++   +  ++F  L  LE++ L  NS+     G   GL           
Sbjct: 75  SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA---------- 123

Query: 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKL 166
           S+  L+   N               L    +G       L         L E  L  N +
Sbjct: 124 SLNTLELFDN--------------WLTVIPSG---AFEYLS-------KLRELWLRNNPI 159

Query: 167 SGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNC 225
               S     + SL+ L+L   + +  I       L NLKYL L   N+   +P ++   
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPL 217

Query: 226 TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285
             L+ L + GN F   +   +F  LS L+ + +  +  +            L  L LA N
Sbjct: 218 VGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 286 QLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317
            L   +P +       +    + L  L L  N
Sbjct: 277 NLS-SLPHD-------LFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 49/267 (18%), Positives = 75/267 (28%), Gaps = 65/267 (24%)

Query: 277 LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKIS---- 332
              L L  N         I  +++       +L VL L             +N I     
Sbjct: 77  TRYLNLMENN--------IQMIQADTFRHLHHLEVLQL------------GRNSIRQIEV 116

Query: 333 ---DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYF 389
              +G  +L  + L    LT         L+KL  L L  N I       F  +PSL   
Sbjct: 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 390 ALSQNNISGEFPKE----LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGL 445
            L +        +     L  L+ L +          D+P                + GL
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK----DMPNL------------TPLVGL 220

Query: 446 RPTIFLANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHL 504
              + ++ N     I   +   L  L  L + N+  +    N    L  L  L+L+ N  
Sbjct: 221 E-ELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-- 276

Query: 505 SENNLQGPIPSGGQLHTFPPSSFEGNP 531
                         L + P   F    
Sbjct: 277 -------------NLSSLPHDLFTPLR 290

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 9e-10
 Identities = 46/206 (22%), Positives = 69/206 (33%), Gaps = 33/206 (16%)

Query: 337 NLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNI 396
               V      L+ +VP  +   +    L L  N I       F +L  L    L +N+I
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 397 S----GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLA 452
                G F   L+ L  L +  N        +P   F   +           LR  ++L 
Sbjct: 112 RQIEVGAF-NGLASLNTLELFDNWLTV----IPSGAFEYLSK----------LR-ELWLR 155

Query: 453 NNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQI-SQLTILERLDLSKNHLSE---- 506
           NN +   IP+    ++  L  LDLG       I       L  L+ L+L   ++ +    
Sbjct: 156 NNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL 214

Query: 507 ---NNLQGPIPSGGQLHTFPPSSFEG 529
                L+    SG       P SF G
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHG 240

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 68/342 (19%), Positives = 113/342 (33%), Gaps = 62/342 (18%)

Query: 143 LRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKL 201
           L+++P +I  +       L  N +S    +D   L  L  L L + + I  I       L
Sbjct: 45  LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPL 101

Query: 202 TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
             L+ L + +N+L   +P ++   ++L  L +  N     +    FS L  +  I++  N
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN 157

Query: 262 MFTGSFLLTLTSCRL-LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMN 320
               S         L L  LR++  +L   IP ++ +           LN L L      
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPE----------TLNELHL------ 200

Query: 321 EATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWF 380
                 D NKI      +    L                +KL  L L  NQI     G  
Sbjct: 201 ------DHNKIQ----AIELEDLLR-------------YSKLYRLGLGHNQIRMIENGSL 237

Query: 381 GNLPSLFYFALSQNNISGEFP---KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH 437
             LP+L    L  N +S   P    +L  LQ + +  N   +   +    +        +
Sbjct: 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 438 QYNRIFGLRPTIFLANNSLSGRIPAETGQ-LKFLNVLDLGNN 478
               +F         N      +   T + +     +  GN 
Sbjct: 297 NGISLFN--------NPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.1 bits (185), Expect = 7e-15
 Identities = 57/347 (16%), Positives = 99/347 (28%), Gaps = 73/347 (21%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
              + L+L +N +   L  + F  L  L  + L  N +S      I   A          
Sbjct: 54  PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISK-----IHEKA---------- 97

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
                               +L+       N L  +P ++   +SL E  +H N++    
Sbjct: 98  ---------------FSPLRKLQKLYI-SKNHLVEIPPNLP--SSLVELRIHDNRIRKVP 139

Query: 171 SNDIINLTSLLVLELYSKEL-IGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK 229
                 L ++  +E+    L              L YL +    L+  +P  +     L 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLN 196

Query: 230 TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289
            L+L  N     +   +    S+L  + L  N        +L+    L  L L  N+L  
Sbjct: 197 ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254

Query: 290 QIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLT 349
           ++P          L   K L V++L  N + +   N         F  +           
Sbjct: 255 RVPA--------GLPDLKLLQVVYLHTNNITKVGVN--------DFCPVGF--------- 289

Query: 350 GQVPLWLSKLTKLEVLLLSGNQITGSI--PGWFGNLPSLFYFALSQN 394
                   K      + L  N +      P  F  +           
Sbjct: 290 ------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 65/342 (19%), Positives = 110/342 (32%), Gaps = 73/342 (21%)

Query: 179 SLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLF 238
            L V++     L  ++P++I    +   L L  N++S           +L  L L+ N  
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 239 AGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKL 298
           +  +    FS L +L+ + +  N          +S   L  LR+  N+        I K+
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNR--------IRKV 138

Query: 299 KSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG-FQ--NLRAVSLAGCQLTGQVPLW 355
              +  G +N+N + +  N         + +    G F    L  + ++  +LT  +P  
Sbjct: 139 PKGVFSGLRNMNCIEMGGN-------PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD 190

Query: 356 LSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQN 415
           L     L  L L  N+I             L+   L  N I                   
Sbjct: 191 L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR------------------ 230

Query: 416 KFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDL 475
                   +         +          LR  + L NN LS R+PA    LK L V+ L
Sbjct: 231 -------MIENGSLSFLPT----------LR-ELHLDNNKLS-RVPAGLPDLKLLQVVYL 271

Query: 476 GNNNFAGSIPNQI-------SQLTILERLDLSKNHLSENNLQ 510
             NN    +            +      + L  N +    +Q
Sbjct: 272 HTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 50/257 (19%), Positives = 83/257 (32%), Gaps = 31/257 (12%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
            L H+  L L +N +   +   +F  L  L+ + +S N L      L  SL         
Sbjct: 76  GLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL--------- 125

Query: 109 RLLDFSYNDFSSQVPPR-LGNCSRLKSFQAGYSNLLRS-LPDDIYAAASLEEPSLHFNKL 166
             L    N     VP         +   + G + L  S      +    L    +   KL
Sbjct: 126 VELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

Query: 167 SGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNC 225
           +G   +      +L  L L   + I +I  +   + + L  L L  N +      S+   
Sbjct: 185 TGIPKD---LPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 226 TNLKTLNLMGNLFAGNLSA--YNFSVLSQLETIDLYINMFT----GSF--LLTLTSCRLL 277
             L+ L+L  N     LS        L  L+ + L+ N  T      F  +         
Sbjct: 241 PTLRELHLDNN----KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 278 TALRLACNQLE-GQIPP 293
             + L  N +   ++ P
Sbjct: 297 NGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 24/191 (12%), Positives = 53/191 (27%), Gaps = 52/191 (27%)

Query: 48  GNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS 107
                ++ L+L HN +   + +      + L  + L +N +       I + + +    +
Sbjct: 190 DLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRM-----IENGSLSF-LPT 242

Query: 108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS 167
           +R L    N                          L  +P  +     L+   LH N ++
Sbjct: 243 LRELHLDNNK-------------------------LSRVPAGLPDLKLLQVVYLHTNNIT 277

Query: 168 GFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS-GSLPSSMMNC- 225
               ND   +   +                  K      + L+ N +    +  +   C 
Sbjct: 278 KVGVNDFCPVGFGV------------------KRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 226 TNLKTLNLMGN 236
           T+   +     
Sbjct: 320 TDRLAIQFGNY 330

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 62/286 (21%), Positives = 101/286 (35%), Gaps = 58/286 (20%)

Query: 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI- 198
              LR +PD I  + +    +LH N++     N   +L  L +L+L S+  I +I     
Sbjct: 52  RKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQL-SRNHIRTIEIGAF 108

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMM-NCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID 257
             L NL  L L+ N L+ ++P+      + LK L L  N    ++ +Y F+ +  L  +D
Sbjct: 109 NGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD 166

Query: 258 LYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317
           L                           +L   I             G  NL  L L   
Sbjct: 167 LG-----------------------ELKRLS-YISEGA-------FEGLSNLRYLNL--- 192

Query: 318 FMNEATPNYDQNKISD-----GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQI 372
                        + +         L  + L+G  L+   P     L  L+ L +  +QI
Sbjct: 193 ---------AMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 373 TGSIPGWFGNLPSLFYFALSQNNIS---GEFPKELSRLQPLVIEQN 415
                  F NL SL    L+ NN++    +    L  L+ + +  N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 23/222 (10%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS----GELTGLIPSLAWNHS 104
           +L H+  L LS NH+   + I +F+ L  L  ++L  N L+    G    L   L     
Sbjct: 86  HLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL-SKL----- 138

Query: 105 FCSMRLLDFSYNDFSSQVPPRL-GNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLH 162
               + L    N   S +P         L+    G    L  + +  +   ++L   +L 
Sbjct: 139 ----KELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSS 221
              L      ++  L  L  L+L S   + +I       L +L+ L + ++ +     ++
Sbjct: 194 MCNLREI--PNLTPLIKLDELDL-SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 222 MMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMF 263
             N  +L  +NL  N     L    F+ L  LE I L+ N +
Sbjct: 251 FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 9e-15
 Identities = 60/268 (22%), Positives = 98/268 (36%), Gaps = 43/268 (16%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
           T+   LNL  N +   + +NSF  L  LEI+ LS N +       I   A+N    ++  
Sbjct: 64  TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIR-----TIEIGAFNGLA-NLNT 116

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
           L+   N              RL +   G       L         L+E  L  N +    
Sbjct: 117 LELFDN--------------RLTTIPNG---AFVYLS-------KLKELWLRNNPIESIP 152

Query: 171 SNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK 229
           S     + SL  L+L   + +  I       L+NL+YL L   NL   +P ++     L 
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLD 210

Query: 230 TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289
            L+L GN  +  +   +F  L  L+ + +  +           + + L  + LA N L  
Sbjct: 211 ELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT- 268

Query: 290 QIPPEIIKLKSLILMGCKNLNVLFLTMN 317
            +P +       +     +L  + L  N
Sbjct: 269 LLPHD-------LFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 6e-13
 Identities = 50/224 (22%), Positives = 77/224 (34%), Gaps = 34/224 (15%)

Query: 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
             N R ++L   Q+          L  LE+L LS N I     G F  L +L    L  N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 395 NIS----GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH----QYNRIFGLR 446
            ++    G F   LS+L+ L +  N        +P + F    S       +  R+  + 
Sbjct: 123 RLTTIPNGAF-VYLSKLKELWLRNNPIES----IPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 447 PTIF----------LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILER 496
              F          LA  +L   IP  T  L  L+ LDL  N+ +   P     L  L++
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 497 LDLSKNHLSE---------NNLQGPIPSGGQLHTFPPSSFEGNP 531
           L + ++ +            +L     +   L   P   F    
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 62/315 (19%), Positives = 104/315 (33%), Gaps = 87/315 (27%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
            +P  I   TN + L L+ N +     +S  +  +L+ L L  N     +    F+ L+ 
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113

Query: 253 LETIDLYINMFT----GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKN 308
           L T++L+ N  T    G+F+  L+    L  L L  N +E  IP               +
Sbjct: 114 LNTLELFDNRLTTIPNGAFV-YLSK---LKELWLRNNPIE-SIPSYA-------FNRIPS 161

Query: 309 LNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLS 368
           L  L L            +  ++S     +   +  G             L+ L  L L+
Sbjct: 162 LRRLDL-----------GELKRLS----YISEGAFEG-------------LSNLRYLNLA 193

Query: 369 GNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFL 428
              +   IP     L  L    LS N++S              I    F      L    
Sbjct: 194 MCNLR-EIPN-LTPLIKLDELDLSGNHLS-------------AIRPGSF----QGLM--- 231

Query: 429 FPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQ 487
                           L+  +++  + +   I       L+ L  ++L +NN      + 
Sbjct: 232 ---------------HLQ-KLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 488 ISQLTILERLDLSKN 502
            + L  LER+ L  N
Sbjct: 275 FTPLHHLERIHLHHN 289

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 57/239 (23%), Positives = 86/239 (35%), Gaps = 44/239 (18%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
           ++P  I      + + L+ N +S    +S   C NL  L L  N+ A  + A  F+ L+ 
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 253 LETIDLYINMF-----TGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCK 307
           LE +DL  N         +F         L  L L    L+ ++ P +         G  
Sbjct: 82  LEQLDLSDNAQLRSVDPATF----HGLGRLHTLHLDRCGLQ-ELGPGL-------FRGLA 129

Query: 308 NLNVLFLTMNFMNEATPNYDQNKIS-------DGFQNLRAVSLAGCQLTGQVPLWLSKLT 360
            L  L+L              N +            NL  + L G +++         L 
Sbjct: 130 ALQYLYL------------QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 361 KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKE----LSRLQPLVIEQN 415
            L+ LLL  N++    P  F +L  L    L  NN+S   P E    L  LQ L +  N
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 13/214 (6%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
                + L  N +   +P  SF     L I+ L  N L+      I + A+      +  
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLA-----RIDAAAFTG-LALLEQ 84

Query: 111 LDFSYNDFSSQVPPR-LGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLSG 168
           LD S N     V P       RL +        L+ L   ++   A+L+   L  N L  
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 169 FISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTN 227
              +   +L +L  L L+    I S+P      L +L  LLL++N ++   P +  +   
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 228 LKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
           L TL L  N  +  L     + L  L+ + L  N
Sbjct: 203 LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 41/189 (21%), Positives = 59/189 (31%), Gaps = 23/189 (12%)

Query: 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
               + + L G +++            L +L L  N +       F  L  L    LS N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 395 NISGEFPKE----LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH---QYNRIFGLRP 447
                        L RL  L +++         L   LF    +  +   Q N +  L  
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQE----LGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 448 TIF----------LANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQISQLTILER 496
             F          L  N +S  +P      L  L+ L L  N  A   P+    L  L  
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 497 LDLSKNHLS 505
           L L  N+LS
Sbjct: 206 LYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 20/173 (11%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS----GELTGLIPSLAWNHS 104
            L  +  L+LS N     +   +FH L  L  + L    L     G   GL  +L     
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AAL----- 131

Query: 105 FCSMRLLDFSYNDFSSQVPPR-LGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLH 162
               + L    N   + +P     +   L        N + S+P+  +    SL+   LH
Sbjct: 132 ----QYLYLQDNALQA-LPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLH 185

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNL 214
            N+++    +   +L  L+ L L++  L  ++P +    L  L+YL L  N  
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 50/259 (19%)

Query: 143 LRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKL 201
              +PD++    S +   L FN L    S    +   L VL+L   E I +I       L
Sbjct: 19  FYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSL 75

Query: 202 TNLKYLLLYRNNLSGSLPSSM-MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYI 260
           ++L  L+L  N +  SL        ++L+ L  +    A +L  +    L  L+ +++  
Sbjct: 76  SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAH 133

Query: 261 NMFT-----GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLT 315
           N+         F   LT+   L  L L+ N+++  I    ++           + +L L+
Sbjct: 134 NLIQSFKLPEYFS-NLTN---LEHLDLSSNKIQ-SIYCTDLR-------VLHQMPLLNLS 181

Query: 316 MNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGS 375
           ++           N ++                   +     K  +L+ L L  NQ+   
Sbjct: 182 LDL--------SLNPMN------------------FIQPGAFKEIRLKELALDTNQLKSV 215

Query: 376 IPGWFGNLPSLFYFALSQN 394
             G F  L SL    L  N
Sbjct: 216 PDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 20/219 (9%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
               +L+LS N +   L   SF     L+++DLS   +       I   A+      +  
Sbjct: 28  FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQT-----IEDGAYQS-LSHLST 80

Query: 111 LDFSYNDFSSQVPPRL-GNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLSG 168
           L  + N   S +        S L+   A     L SL +       +L+E ++  N +  
Sbjct: 81  LILTGNPIQS-LALGAFSGLSSLQKLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 169 FISNDI-INLTSLLVLELYSKELIGSIPRDI-GKLTNLKY----LLLYRNNLSGSLPSSM 222
           F   +   NLT+L  L+L S + I SI       L  +      L L  N ++  +    
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA 196

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
                LK L L  N    ++    F  L+ L+ I L+ N
Sbjct: 197 FKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 17/195 (8%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN--HSFC 106
           +   +  L+LS   +   +   ++  L+ L  + L+ N +         SLA        
Sbjct: 50  SFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ--------SLALGAFSGLS 100

Query: 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA--ASLEEPSLHFN 164
           S++ L     + +S     +G+   LK       NL++S     Y +   +LE   L  N
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELN-VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 165 KLSGFISNDIINLTSL--LVLELY-SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSS 221
           K+      D+  L  +  L L L  S   +  I     K   LK L L  N L       
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 222 MMNCTNLKTLNLMGN 236
               T+L+ + L  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 41/199 (20%), Positives = 64/199 (32%), Gaps = 41/199 (20%)

Query: 327 DQNKIS-------DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW 379
             N +          F  L+ + L+ C++          L+ L  L+L+GN I     G 
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95

Query: 380 FGNLPSLFYFALSQNNI----SGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNST 435
           F  L SL      + N+    +      L  L+ L +  N                    
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLI-----------------Q 137

Query: 436 SHQYNRIF----GLRPTIFLANNSLSGRIPAET----GQLKFLNV-LDLGNNNFAGSIPN 486
           S +    F     L   + L++N +   I         Q+  LN+ LDL  N     I  
Sbjct: 138 SFKLPEYFSNLTNLE-HLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 487 QISQLTILERLDLSKNHLS 505
              +   L+ L L  N L 
Sbjct: 195 GAFKEIRLKELALDTNQLK 213

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 55/226 (24%), Positives = 80/226 (35%), Gaps = 35/226 (15%)

Query: 176 NLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG 235
            + S L +    + L  ++P D+    +   L L  N L     +++M  T L  LNL  
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEI 295
                 L       L  L T+DL  N    S  L   +   LT L ++ N+L   +P   
Sbjct: 65  AELT-KLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 296 IKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKIS-------DGFQNLRAVSLAGCQL 348
                  L G   L  L+L              N++             L  +SLA   L
Sbjct: 120 -------LRGLGELQELYL------------KGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 349 TGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
           T      L+ L  L+ LLL  N +  +IP  F     L +  L  N
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 44/188 (23%), Positives = 67/188 (35%), Gaps = 15/188 (7%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
              + L+LS N ++    + +    T L  ++L    L+         L  + +   +  
Sbjct: 31  KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELT--------KLQVDGTLPVLGT 81

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGF 169
           LD S+N   S +P        L        N L SLP         L+E  L  N+L   
Sbjct: 82  LDLSHNQLQS-LPLLGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 170 ISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTNL 228
               +     L  L L +  L   +P  +   L NL  LLL  N+L  ++P        L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 229 KTLNLMGN 236
               L GN
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 31/200 (15%)

Query: 308 NLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLL 367
           +  +L L+ N +   +           +  L  ++L   +LT ++ +    L  L  L L
Sbjct: 32  DTTILHLSENLLYTFSLA-----TLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDL 84

Query: 368 SGNQITGSIPGWFGNLPSLFYFALSQNNIS----GEFPKELSRLQPLVIEQNKFNRNKPD 423
           S NQ+  S+P     LP+L    +S N ++    G     L  LQ L ++ N+       
Sbjct: 85  SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKT---- 138

Query: 424 LPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET-GQLKFLNVLDLGNNNFAG 482
           LP  L                    + LANN+L+  +PA     L+ L+ L L  N+   
Sbjct: 139 LPPGLLTPTPKLEK-----------LSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY- 185

Query: 483 SIPNQISQLTILERLDLSKN 502
           +IP       +L    L  N
Sbjct: 186 TIPKGFFGSHLLPFAFLHGN 205

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 2e-12
 Identities = 51/303 (16%), Positives = 97/303 (32%), Gaps = 40/303 (13%)

Query: 156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS 215
           + E       +   I  D       +   L  K +  ++     +L ++  ++   +++ 
Sbjct: 1   MGETITVSTPIKQ-IFPDD-AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 216 GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCR 275
            S+   +    N+  L L GN           + L  L  + L  N      L +L   +
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDENKIKD--LSSLKDLK 109

Query: 276 LLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATP----------N 325
            L +L L  N +   I           L+    L  L+L  N + + T           +
Sbjct: 110 KLKSLSLEHNGIS-DING---------LVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 159

Query: 326 YDQNKISD-----GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWF 380
            + N+ISD     G   L+ + L+   ++    L  + L  L+VL L   +         
Sbjct: 160 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRAL--AGLKNLDVLELFSQECLNKPINHQ 217

Query: 381 GNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYN 440
            NL       +   + S   P+ +S          K++  +          Q  T  +  
Sbjct: 218 SNLVVPNT--VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAK 275

Query: 441 RIF 443
             F
Sbjct: 276 ARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.7 bits (157), Expect = 4e-11
 Identities = 50/298 (16%), Positives = 92/298 (30%), Gaps = 37/298 (12%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            +            NL    V   +  N    L  ++ I  + + +   + G+       
Sbjct: 13  QIFPDDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIK-SVQGI------- 61

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNL-----LRSLPDDIYAAASLE 157
               ++  L  + N  +   P  L N   L       + +     L+ L         L+
Sbjct: 62  QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLK-------KLK 112

Query: 158 EPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGS 217
             SL  N +S  I+  +++L  L  L L     I  I   + +LT L  L L  N +S  
Sbjct: 113 SLSLEHNGISD-ING-LVHLPQLESLYL-GNNKITDIT-VLSRLTKLDTLSLEDNQIS-D 167

Query: 218 LPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLL 277
           +   +   T L+ L L  N  +        + L  L+ ++L+        +   ++  + 
Sbjct: 168 I-VPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

Query: 278 TALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGF 335
             ++     L     PEII             ++   T              K    F
Sbjct: 224 NTVKNTDGSLV---TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 1e-10
 Identities = 52/268 (19%), Positives = 87/268 (32%), Gaps = 55/268 (20%)

Query: 246 NFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMG 305
                ++    +L     T    +T      +  +    +         I  ++ +    
Sbjct: 16  PDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD--------IKSVQGIQ--Y 63

Query: 306 CKNLNVLFLTMNFMNEATPNYDQNKISD-----GFQNLRAVSLAGCQLTGQVPLWLSKLT 360
             N+  LFL            + NK++D       +NL  + L   ++     L    L 
Sbjct: 64  LPNVTKLFL------------NGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSL--KDLK 109

Query: 361 KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG-EFPKELSRLQPLVIEQNKFNR 419
           KL+ L L  N I+  I G   +LP L    L  N I+       L++L  L +E N+ + 
Sbjct: 110 KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS- 166

Query: 420 NKPDLPFFL-FPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNN 478
              D+          +     N I  LR    LA              LK L+VL+L + 
Sbjct: 167 ---DIVPLAGLTKLQNLYLSKNHISDLRA---LAG-------------LKNLDVLELFSQ 207

Query: 479 NFAGSIPNQISQLTILERLDLSKNHLSE 506
                  N  S L +   +  +   L  
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVT 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 34/250 (13%), Positives = 60/250 (24%), Gaps = 16/250 (6%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
            IP D+    N   L      L      +     +L+ + +  N     + A  FS L +
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 253 LETIDL-YINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNV 311
           L  I +   N           +   L  L ++   ++         L  +  +      +
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK--------HLPDVHKIHSLQKVL 132

Query: 312 LFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQ 371
           L +  N           N           + L    +        +     E+ L   N 
Sbjct: 133 LDIQDNINIHTIER---NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 372 ITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPN 431
           +       F          +S+  I       L  L+ L          K          
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLEKLVA 247

Query: 432 QNSTSHQYNR 441
               S  Y  
Sbjct: 248 LMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 43/265 (16%), Positives = 82/265 (30%), Gaps = 36/265 (13%)

Query: 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI- 198
            + +  +P D+    +  E      KL             L  +E+   +++  I  D+ 
Sbjct: 18  ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSM-MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID 257
             L  L  + + + N    +      N  NL+ L +       +L   +     Q   +D
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLD 134

Query: 258 LYINMF-----TGSFLLTLTSCRLLTALRLACNQLEGQIPPEI---IKLKSLILMGCKNL 309
           +  N+        SF + L+       L L  N ++ +I        +L  L L    NL
Sbjct: 135 IQDNINIHTIERNSF-VGLSF--ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNL 190

Query: 310 NVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSG 369
             L                N +  G      + ++  ++       L  L KL       
Sbjct: 191 EEL---------------PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 370 NQITGSIPGWFGNLPSLFYFALSQN 394
            +    +P     L +L   +L+  
Sbjct: 236 LK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.5 bits (152), Expect = 8e-11
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 34/217 (15%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
            +   L      +   +   +F     LE I++S N    ++  +I +            
Sbjct: 30  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQN----DVLEVIEADV---------- 74

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGF 169
             FS             N  +L   +   +N L  +  + +    +L+   +    +   
Sbjct: 75  --FS-------------NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119

Query: 170 ISNDIINLTSLLVLELYSKELIGSIPRDI--GKLTNLKYLLLYRNNLSGSLPSSMMNCTN 227
                I+    ++L++     I +I R+   G       L L +N +   + +S  N T 
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ 178

Query: 228 LKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT 264
           L  LNL  N     L    F   S    +D+      
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 36/216 (16%), Positives = 67/216 (31%), Gaps = 20/216 (9%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLS-YNSLSGELTGLIPSLAWNHSFCS 107
               +  + +S N V   +  + F  L  L  I +   N+L         +L       +
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP------N 105

Query: 108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYA--AASLEEPSLHFNK 165
           ++ L  S             +  +        +  + ++  + +   +       L+ N 
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMM- 223
           +   I N   N T L  L L     +  +P D+    +    L + R  +  SLPS  + 
Sbjct: 166 IQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLE 223

Query: 224 NCTNLKTLNLMGNLFAGNLSAY-NFSVLSQLETIDL 258
           N   L+  +        NL        L  L    L
Sbjct: 224 NLKKLRARST------YNLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 41/189 (21%), Positives = 70/189 (37%), Gaps = 20/189 (10%)

Query: 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP-GWFGNLPSLFYFALSQ 393
            +N   +     +L        S    LE + +S N +   I    F NLP L    + +
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 394 NN----ISGEFPKELSRLQPLVIEQNKFNRNKPDLPFF---------LFPNQNSTSHQYN 440
            N    I+ E  + L  LQ L+I      ++ PD+            +  N N  + + N
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 441 RIFGLRP---TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQI-SQLTILER 496
              GL      ++L  N +   I         L+ L+L +NN    +PN +    +    
Sbjct: 148 SFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 497 LDLSKNHLS 505
           LD+S+  + 
Sbjct: 207 LDISRTRIH 215

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 38/224 (16%), Positives = 73/224 (32%), Gaps = 48/224 (21%)

Query: 176 NLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG 235
              + L   L  +    +I     ++ +L Y+ L   N++  L + +    N+K L +  
Sbjct: 21  TFKAYLNGLL-GQSSTANI--TEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75

Query: 236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEI 295
                N +    S LS LE + +     T   +  L+    LT L ++ +  +  I  +I
Sbjct: 76  IHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 296 IKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLW 355
             L          +N + L+ N             I+D              +       
Sbjct: 133 NTLP--------KVNSIDLSYN-----------GAITD--------------IMP----- 154

Query: 356 LSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGE 399
           L  L +L+ L +  + +         + P L         I G+
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 16/134 (11%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNL 214
           ++++ +++    +   +  I  L++L  L +  K++      ++  LT+L  L +  +  
Sbjct: 67  NIKDLTINNIHATN-YNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 215 SGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG-SFLLTLTS 273
             S+ + +     + +++L  N    ++       L +L+++++  +       +     
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRGIEDFPK 182

Query: 274 CRLLTALRLACNQL 287
              L  L      +
Sbjct: 183 ---LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 45/183 (24%)

Query: 327 DQNKISD----GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGN 382
            Q+  ++       +L  ++LA   +T    +       ++ L ++    T   P     
Sbjct: 31  GQSSTANITEAQMNSLTYITLANINVTDLTGI--EYAHNIKDLTINNIHATNYNP--ISG 86

Query: 383 LPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRI 442
           L +L    +   +++ +    LS L  L                                
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLT------------------------------- 115

Query: 443 FGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN 502
                 + +++++    I  +   L  +N +DL  N     I   +  L  L+ L++  +
Sbjct: 116 -----LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFD 169

Query: 503 HLS 505
            + 
Sbjct: 170 GVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 22/193 (11%), Positives = 55/193 (28%), Gaps = 42/193 (21%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS--GELTGLIPSLAWNH 103
           +   +  ++++ L++ +V     +    +   ++ + ++    +    ++GL        
Sbjct: 39  TEAQMNSLTYITLANINVTD---LTGIEYAHNIKDLTINNIHATNYNPISGLS------- 88

Query: 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
              ++  L     D +S   P L   + L                            +  
Sbjct: 89  ---NLERLRIMGKDVTSDKIPNLSGLTSLTLL------------------------DISH 121

Query: 164 NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMM 223
           +     I   I  L  +  ++L     I  I   +  L  LK L +  + +         
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIE-- 178

Query: 224 NCTNLKTLNLMGN 236
           +   L  L     
Sbjct: 179 DFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 19/119 (15%)

Query: 305 GCKNLNVLFLTMNFMNEATPNYDQNKISD-----GFQNLRAVSLAGCQLTGQVPLWLSKL 359
              N+  L +            +    ++     G  NL  + + G  +T      LS L
Sbjct: 64  YAHNIKDLTI------------NNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 360 TKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP--KELSRLQPLVIEQNK 416
           T L +L +S +    SI      LP +    LS N    +    K L  L+ L I+ + 
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 21/169 (12%), Positives = 49/169 (28%), Gaps = 42/169 (24%)

Query: 337 NLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNI 396
             +A        +    +  +++  L  + L+   +T  + G      ++    ++  + 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHA 78

Query: 397 SG-EFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNS 455
           +       LS L+ L                                        +    
Sbjct: 79  TNYNPISGLSNLERL---------------------------------------RIMGKD 99

Query: 456 LSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHL 504
           ++         L  L +LD+ ++    SI  +I+ L  +  +DLS N  
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 24/145 (16%), Positives = 56/145 (38%), Gaps = 12/145 (8%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            L  I    +I  L +++ H     PI+    L+ LE + +    ++ +    +  L   
Sbjct: 58  DLTGIEYAHNIKDLTINNIHATNYNPISG---LSNLERLRIMGKDVTSDKIPNLSGLT-- 112

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
               S+ LLD S++     +  ++    ++ S    Y+  +  +   +     L+  ++ 
Sbjct: 113 ----SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQ 167

Query: 163 FNKLSGFISNDIINLTSLLVLELYS 187
           F+ +  +    I +   L  L  +S
Sbjct: 168 FDGVHDY--RGIEDFPKLNQLYAFS 190

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 57/210 (27%), Positives = 83/210 (39%), Gaps = 40/210 (19%)

Query: 56  LNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSY 115
           L+L  N +   LP  +FH LT L ++ L+ N L                           
Sbjct: 42  LDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-------------------------- 74

Query: 116 NDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGFISNDI 174
               + +   L N   L        N L++LP  ++    +L E  L  N+L   +   +
Sbjct: 75  -TLPAGIFKELKNLETLWV----TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRV 128

Query: 175 -INLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMM-NCTNLKTL 231
             +LT L  L L   EL  S+P+ +  KLT+LK L LY N L   +P       T LKTL
Sbjct: 129 FDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTL 186

Query: 232 NLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
            L  N     +    F  L +L+ + L  N
Sbjct: 187 KLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 139 YSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI 198
            S  L ++P +I   A  ++  L  NKLS   S     LT L +L L   +L  ++P  I
Sbjct: 24  SSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGI 80

Query: 199 -GKLTNLKYLLLYRNNLSGSLPSSMMNC-TNLKTLNLMGNLFAGNLSAYNFSVLSQLETI 256
             +L NL+ L +  N L  +LP  + +   NL  L L  N    +L    F  L++L  +
Sbjct: 81  FKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL 138

Query: 257 DLYINMFT----GSFLLTLTSCRLLTALRLACNQL 287
            L  N       G F   LTS   L  LRL  NQL
Sbjct: 139 SLGYNELQSLPKGVF-DKLTS---LKELRLYNNQL 169

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 55/210 (26%), Positives = 73/210 (34%), Gaps = 50/210 (23%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
           +IP +I    + K L L  N LS     +    T L+ L L  N     L A  F  L  
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 253 LETIDLYINMFT----GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKN 308
           LET+ +  N       G F   L +   L  LRL  NQL+  +PP +             
Sbjct: 87  LETLWVTDNKLQALPIGVFD-QLVN---LAELRLDRNQLK-SLPPRV------------- 128

Query: 309 LNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL-SKLTKLEVLLL 367
                    F              D    L  +SL   +L   +P  +  KLT L+ L L
Sbjct: 129 ---------F--------------DSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL 164

Query: 368 SGNQITGSIPGWFGNLPSLFYFALSQNNIS 397
             NQ+     G F  L  L    L  N + 
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 35/191 (18%)

Query: 327 DQNKIS-------DGFQNLRAVSLAGCQLTGQVPLWL-SKLTKLEVLLLSGNQITGSIP- 377
             NK+S            LR + L   +L   +P  +  +L  LE L ++ N++  ++P 
Sbjct: 45  QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPI 102

Query: 378 GWFGNLPSLFYFALSQNNIS----GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQN 433
           G F  L +L    L +N +       F   L++L  L +  N+       LP  +F    
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNEL----QSLPKGVF---- 153

Query: 434 STSHQYNRIFGLRPTIFLANNSLSGRIPAET-GQLKFLNVLDLGNNNFAGSIPNQI-SQL 491
                 +++  L+  + L NN L  R+P     +L  L  L L NN     +P      L
Sbjct: 154 ------DKLTSLK-ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSL 204

Query: 492 TILERLDLSKN 502
             L+ L L +N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 42/189 (22%), Positives = 64/189 (33%), Gaps = 37/189 (19%)

Query: 360 TKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS----GEFPKELSRLQPLVIEQN 415
              + L L  N+++      F  L  L    L+ N +     G F + L  L+ L +  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-LKNLETLWVTDN 95

Query: 416 KFNRNKPDLPFFLFPNQNSTSH---QYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNV 472
           K       LP  +F    + +      N++  L P +F                L  L  
Sbjct: 96  KLQ----ALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--------------DSLTKLTY 137

Query: 473 LDLGNNNFAGSIPNQI-SQLTILERLDLSKNHLSE---------NNLQGPIPSGGQLHTF 522
           L LG N    S+P  +  +LT L+ L L  N L             L+       QL   
Sbjct: 138 LSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196

Query: 523 PPSSFEGNP 531
           P  +F+   
Sbjct: 197 PEGAFDSLE 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 44/251 (17%)

Query: 154 ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNN 213
           A+  + +   + ++  ++    +L  +  L  +    + +I   +  L NL  L L  N 
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQ 74

Query: 214 LSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTS 273
           ++    + + N T +  L L GN    N+S    + L  ++T+DL     T   +  L  
Sbjct: 75  ITD--LAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTSTQITD--VTPLAG 127

Query: 274 CRLLTALRLACNQLEGQIPP--EIIKLKSLILMGCK-----------NLNVLFLTMNFMN 320
              L  L L  NQ+   I P   +  L+ L +   +            L  L        
Sbjct: 128 LSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA------ 180

Query: 321 EATPNYDQNKISD-----GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGS 375
                 D NKISD        NL  V L   Q++   PL  +  + L ++ L+   IT  
Sbjct: 181 ------DDNKISDISPLASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTITNQ 232

Query: 376 IPGWFGNLPSL 386
              +  NL   
Sbjct: 233 PVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 54/316 (17%), Positives = 101/316 (31%), Gaps = 78/316 (24%)

Query: 200 KLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLY 259
            L N   +   ++N++     +  +   + TL+  G       +      L+ L  ++L 
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 260 INMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFM 319
            N  T   L  L +   +T L L+ N L+  +           + G +++  L LT   +
Sbjct: 72  DNQITD--LAPLKNLTKITELELSGNPLK-NVSA---------IAGLQSIKTLDLTSTQI 119

Query: 320 NEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW 379
            + TP         G  NL+ + L   Q+T   PL  + LT L+ L +   Q++  +   
Sbjct: 120 TDVTPL-------AGLSNLQVLYLDLNQITNISPL--AGLTNLQYLSIGNAQVS-DLTP- 168

Query: 380 FGNLPSLFYFALSQNNISG-EFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQ 438
             NL  L       N IS       L  L  + ++ N+ +    D+              
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS----DVSPL----------- 213

Query: 439 YNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLD 498
                                          L ++ L N          I+   +    +
Sbjct: 214 --------------------------ANTSNLFIVTLTN--------QTITNQPVFYNNN 239

Query: 499 LSKNHLSENNLQGPIP 514
           L   ++ +     PI 
Sbjct: 240 LVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 43/264 (16%), Positives = 96/264 (36%), Gaps = 26/264 (9%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
            L +   +    ++V   +       L  +  +      ++  + G+           ++
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVT-TIEGV-------QYLNNL 65

Query: 109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSG 168
             L+   N  +   P  L N +++   +    N L+++   I    S++   L   +++ 
Sbjct: 66  IGLELKDNQITDLAP--LKNLTKITELELSG-NPLKNV-SAIAGLQSIKTLDLTSTQITD 121

Query: 169 FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNL 228
                +  L++L VL L   + I +I   +  LTNL+YL +    +S    + + N + L
Sbjct: 122 V--TPLAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVSDL--TPLANLSKL 175

Query: 229 KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE 288
            TL    N  + ++S    + L  L  + L  N  +   +  L +   L  + L    + 
Sbjct: 176 TTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTIT 230

Query: 289 GQIPPEIIKLKSLILMGCKNLNVL 312
            Q       L    ++   +   +
Sbjct: 231 NQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 42/219 (19%), Positives = 82/219 (37%), Gaps = 22/219 (10%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            +  +  L ++  L L  N +    P+ +   LT +  ++LS N L       + ++A  
Sbjct: 55  TIEGVQYLNNLIGLELKDNQITDLAPLKN---LTKITELELSGNPLKN-----VSAIA-- 104

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
               S++ LD +    +   P  L   S L+       N + ++   +    +L+  S+ 
Sbjct: 105 -GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLD-LNQITNIS-PLAGLTNLQYLSIG 159

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM 222
             ++S      + NL+ L  L+    + I  I   +  L NL  + L  N +S    S +
Sbjct: 160 NAQVSDL--TPLANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQISDV--SPL 213

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
            N +NL  + L       N   +  + L     +     
Sbjct: 214 ANTSNLFIVTLTNQTIT-NQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 31/286 (10%)

Query: 44  LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNH 103
             +  +L  I+ L+     V     I    +L  L  ++L  N ++      +  L    
Sbjct: 34  TVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQITD-----LAPLK--- 82

Query: 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
           +   +  L+ S N   +     +     +K+     S  +  +   +   ++L+   L  
Sbjct: 83  NLTKITELELSGNPLKN--VSAIAGLQSIKTLDLT-STQITDVT-PLAGLSNLQVLYLDL 138

Query: 164 NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMM 223
           N+++    + +  LT+L  L + + + +  +   +  L+ L  L    N +S    S + 
Sbjct: 139 NQITNI--SPLAGLTNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDNKISDI--SPLA 192

Query: 224 NCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLA 283
           +  NL  ++L  N  +        +  S L  + L     T      +     L    + 
Sbjct: 193 SLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPNVV 246

Query: 284 CNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQN 329
                  I P  I           + N+ +   +F+N  +  ++Q+
Sbjct: 247 KGPSGAPIAPATISDNGT----YASPNLTWNLTSFINNVSYTFNQS 288

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS 392
               N   ++     +T  V    + L  +  L   G  +T +I G    L +L    L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELK 71

Query: 393 QNNISGEFP-KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFL 451
            N I+   P K L+++  L +  N            +       S +          + L
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKN--------VSAIAGLQSIKT---------LDL 114

Query: 452 ANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSE 506
            +  ++   P     L  L VL L  N    +I   ++ LT L+ L +    +S+
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD 165

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 41/275 (14%), Positives = 81/275 (29%), Gaps = 38/275 (13%)

Query: 36  NKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGL 95
           +          I     +  L +    +   +   +   L +  + +L+  +L   +TG 
Sbjct: 53  DTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE--VTGT 110

Query: 96  IPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAAS 155
            P      +   + +L+     ++          + L   Q      L+ L         
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWA-------TRDAWLAELQQWLKPGLKVL--------- 154

Query: 156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI----GKLTNLKYLLLYR 211
               S+       F    +    +L  L+L     +G           K   L+ L L  
Sbjct: 155 ----SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 212 NN---LSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFL 268
                 SG   +       L+ L+L  N       A +    SQL +++L          
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK---- 266

Query: 269 LTLTSC--RLLTALRLACNQLEGQIPPEIIKLKSL 301
             +       L+ L L+ N+L+    P   +L  +
Sbjct: 267 -QVPKGLPAKLSVLDLSYNRLDR--NPSPDELPQV 298

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 49/293 (16%), Positives = 82/293 (27%), Gaps = 39/293 (13%)

Query: 227 NLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFL---LTLTSCRLLTALRLA 283
           +L+ L    +  A      +      L+ + +         L   L +     L  L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 284 CNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSL 343
             ++ G  PP +++          +LN+L L  N        +           L+ +S+
Sbjct: 104 NLEVTGTAPPPLLEATGP------DLNILNLR-NVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 344 AGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW----FGNLPSLFYFALSQNNIS-- 397
           A           +     L  L LS N   G             P+L   AL    +   
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 398 ----GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLAN 453
                       +LQ L +  N                             L  ++ L+ 
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ-------------LN-SLNLSF 262

Query: 454 NSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSE 506
             L  ++P        L+VLDL  N      P    +L  +  L L  N   +
Sbjct: 263 TGLK-QVPKGLPAK--LSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 29/173 (16%), Positives = 50/173 (28%), Gaps = 14/173 (8%)

Query: 50  LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMR 109
              +  L+++  H               L  +DLS N   GE    + S      F +++
Sbjct: 148 KPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERG--LISALCPLKFPTLQ 204

Query: 110 LLDFSYNDFSS---QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA--ASLEEPSLHFN 164
           +L        +             +L+     + N LR           + L   +L F 
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 165 KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGS 217
            L          L+ L +    S   +   P    +L  +  L L  N    S
Sbjct: 264 GLKQVPKGLPAKLSVLDL----SYNRLDRNP-SPDELPQVGNLSLKGNPFLDS 311

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 45/261 (17%), Positives = 88/261 (33%), Gaps = 38/261 (14%)

Query: 176 NLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG 235
                +   L  K +  ++     +L ++  ++   +++  S+   +    N+  L L G
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEI 295
           N           + L  L  + L  N      L +L   + L +L L  N +   I    
Sbjct: 78  NKLT---DIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGIS-DING-- 129

Query: 296 IKLKSLILMGCKNLNVLFLTMNFMNEATP----------NYDQNKISD-----GFQNLRA 340
                  L+    L  L+L  N + + T           + + N+ISD     G   L+ 
Sbjct: 130 -------LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182

Query: 341 VSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEF 400
           + L+   ++    L  + L  L+VL L   +          NL       +   + S   
Sbjct: 183 LYLSKNHISDLRAL--AGLKNLDVLELFSQECLNKPINHQSNLVVP--NTVKNTDGSLVT 238

Query: 401 PKELSRLQPLVIEQNKFNRNK 421
           P+ +S          K++  +
Sbjct: 239 PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 52/292 (17%), Positives = 101/292 (34%), Gaps = 41/292 (14%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            + S          NL    V   +  N    L  ++ I  + + +   + G+       
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIK-SVQGI------- 64

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNL-----LRSLPDDIYAAASLE 157
               ++  L  + N  +   P  L N   L       + +     L+ L         L+
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLK-------KLK 115

Query: 158 EPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGS 217
             SL  N +S  I+  +++L  L  L L + ++  +    + +LT L  L L  N +S  
Sbjct: 116 SLSLEHNGISD-ING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-D 170

Query: 218 LPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLL 277
           +   +   T L+ L L  N  +        + L  L+ ++L+        +   ++  + 
Sbjct: 171 I-VPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 278 TALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQN 329
             ++     L   + PEII          +  NV +    F NE +  + Q 
Sbjct: 227 NTVKNTDGSL---VTPEIISDDGDY----EKPNVKWHLPEFTNEVSFIFYQP 271

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 53/267 (19%)

Query: 246 NFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMG 305
           +    ++    +L     T    +T      +  +    + ++  +           +  
Sbjct: 19  SDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG---------IQY 66

Query: 306 CKNLNVLFLTMNFMNEATPNYDQNKISD-----GFQNLRAVSLAGCQLTGQVPLWLSKLT 360
             N+  LFL            + NK++D       +NL  + L   ++     L    L 
Sbjct: 67  LPNVTKLFL------------NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSL--KDLK 112

Query: 361 KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG-EFPKELSRLQPLVIEQNKFNR 419
           KL+ L L  N I+  I G   +LP L    L  N I+       L++L  L +E N+ + 
Sbjct: 113 KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS- 169

Query: 420 NKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNN 479
              D+          T  Q          ++L+ N +S         LK L+VL+L +  
Sbjct: 170 ---DIVPL----AGLTKLQN---------LYLSKNHISDLRALAG--LKNLDVLELFSQE 211

Query: 480 FAGSIPNQISQLTILERLDLSKNHLSE 506
                 N  S L +   +  +   L  
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVT 238

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 45/217 (20%), Positives = 70/217 (32%), Gaps = 63/217 (29%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMM--NCTNLKTLNLMGNLFAGNLSAYNFSVL 250
           ++P+ +   +    L L  NNLS  L +       TNL +L L  N              
Sbjct: 32  NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN-------------- 74

Query: 251 SQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLN 310
             L  I       + +F         L  L L+ N L   +   +           + L 
Sbjct: 75  -HLNFIS------SEAF----VPVPNLRYLDLSSNHLH-TLDEFL-------FSDLQALE 115

Query: 311 VLFLTMNFMNEATPNYDQNKIS-------DGFQNLRAVSLAGCQLTGQVP----LWLSKL 359
           VL L              N I        +    L+ + L+  Q++ + P       +KL
Sbjct: 116 VLLL------------YNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKL 162

Query: 360 TKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS-QNN 395
            KL +L LS N++          LP+     L   NN
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 28/163 (17%)

Query: 356 LSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNI----SGEFPKELSRLQPLV 411
            ++LT L  LLLS N +       F  +P+L Y  LS N++       F  +L  L+ L+
Sbjct: 60  PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF-SDLQALEVLL 118

Query: 412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET----GQL 467
           +  N        +    F +             L+  ++L+ N +S R P E      +L
Sbjct: 119 LYNNHIVV----VDRNAFEDMAQ----------LQ-KLYLSQNQIS-RFPVELIKDGNKL 162

Query: 468 KFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQ 510
             L +LDL +N         + +L    +  L   +L  N L+
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL---YLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 42/216 (19%), Positives = 69/216 (31%), Gaps = 62/216 (28%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
           ++ + L+LSHN++       +   LT L  + LS+N L+      I S A+     ++R 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-----FISSEAFVP-VPNLRY 92

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
           LD S N               L +       L   L        +LE   L+ N +    
Sbjct: 93  LDLSSN--------------HLHTLDEF---LFSDLQ-------ALEVLLLYNNHIV--- 125

Query: 171 SNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLP----SSMMNC 225
                                  + R+    +  L+ L L +N +S   P          
Sbjct: 126 ----------------------VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKL 162

Query: 226 TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
             L  L+L  N     L   +   L       LY++
Sbjct: 163 PKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 43/213 (20%), Positives = 67/213 (31%), Gaps = 62/213 (29%)

Query: 337 NLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW-FGNLPSLFYFALSQNN 395
               +S +  QL   VP  L   T   +L LS N ++     W    L +L    LS N+
Sbjct: 19  ASNILSCSKQQLP-NVPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75

Query: 396 IS----GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFL 451
           ++      F   +  L+ L            DL               N +  L   +F 
Sbjct: 76  LNFISSEAF-VPVPNLRYL------------DL-------------SSNHLHTLDEFLFS 109

Query: 452 ANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQI-SQLTILERLDLSKNHLSE---- 506
                          L+ L VL L NN+    +       +  L++L LS+N +S     
Sbjct: 110 --------------DLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 507 --------NNLQGPIPSGGQLHTFPPSSFEGNP 531
                     L     S  +L   P +  +  P
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
            + ++ +L+LS NH+H  L    F  L  LE++ L  N +      ++   A+      +
Sbjct: 86  PVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIV-----VVDRNAFED-MAQL 138

Query: 109 RLLDFSYNDFSSQVPPR-LGNCSRLKSFQAGY--SNLLRSLPDDIYAA-ASLEEPSLHFN 164
           + L  S N  S   P   + + ++L         SN L+ LP        +  +  L+ +
Sbjct: 139 QKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI- 198
              L  +P ++    ++ E  L  N +             L  ++L + ++   +  D  
Sbjct: 20  GKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAF 76

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMM-NCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID 257
             L +L  L+LY N ++  LP S+     +L+ L L  N     L    F  L  L  + 
Sbjct: 77  QGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLS 134

Query: 258 LYINMFTGSFLLTLTSCRLLTALRLACN 285
           LY N        T +  R +  + LA N
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 4/134 (2%)

Query: 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDI-YAAASLEEPSLHFNK 165
           ++  +    N      P       +L+       N +  L  D      SL    L+ NK
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMN 224
           ++    +    L SL +L L + ++   +  D    L NL  L LY N L      +   
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 225 CTNLKTLNLMGNLF 238
              ++T++L  N F
Sbjct: 151 LRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 20/146 (13%)

Query: 278 TALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQN 337
           T +RL  N ++         +        K L  + L+ N ++E  P+        G ++
Sbjct: 35  TEIRLEQNTIK--------VIPPGAFSPYKKLRRIDLSNNQISELAPD-----AFQGLRS 81

Query: 338 LRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP-GWFGNLPSLFYFALSQNNI 396
           L ++ L G ++T         L  L++LLL+ N+I   +    F +L +L   +L  N +
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140

Query: 397 S----GEFPKELSRLQPLVIEQNKFN 418
                G F   L  +Q + + QN F 
Sbjct: 141 QTIAKGTFSP-LRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 24/146 (16%)

Query: 363 EVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS----GEFPKELSRLQPLVIEQNKFN 418
             + L  N I    PG F     L    LS N IS      F + L  L  LV+  NK  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKIT 93

Query: 419 RNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ-LKFLNVLDLGN 477
               +LP  LF            +F L+  + L  N ++  +  +  Q L  LN+L L +
Sbjct: 94  ----ELPKSLF----------EGLFSLQ-LLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137

Query: 478 NNFAGSIPNQI-SQLTILERLDLSKN 502
           N    +I     S L  ++ + L++N
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
            IP ++     +  + L +N +    P +      L+ ++L  N  +  L+   F  L  
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 253 LETIDLYINMFT----GSFLLTLTSCRLLTALRLACNQLEGQIPPEII-KLKSL 301
           L ++ LY N  T      F   L S   L  L L  N++   +  +    L +L
Sbjct: 82  LNSLVLYGNKITELPKSLF-EGLFS---LQLLLLNANKIN-CLRVDAFQDLHNL 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 74/515 (14%), Positives = 158/515 (30%), Gaps = 114/515 (22%)

Query: 35  MNKLVQRYHLPSIGNLTHISHLNLSHN--HVHGPLPINSFHFLT-----LLEIIDLSYNS 87
           M+ +      PS+    +I   +  +N   V     ++           LLE+       
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 88  LSGELTG-----LIPSLAWNHSFCSMRLLDFSYNDF--SSQVPPRLGNCSRLKSFQAGYS 140
           + G + G     +   +  ++           +  F  +      L NC+  ++      
Sbjct: 155 IDG-VLGSGKTWVALDVCLSYKV----QCKMDFKIFWLN------LKNCNSPETVLEMLQ 203

Query: 141 NLLRSL-PDDIYAAASLEEPSLHFNKLSGFISNDIINL---TSLLVL-ELYSKELIGSIP 195
            LL  + P+    +       L  + +   +   + +      LLVL  + + +   +  
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF- 262

Query: 196 RDIGKLTNLKYLLLYRNN-----LSGSLPS--SMMNCTNLKTLNLMGNLFAGNLSAYNFS 248
            ++      K LL  R       LS +  +  S+ + +   T + + +L    L      
Sbjct: 263 -NLS----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 249 VLSQLETID-LYINMF---------TGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKL 298
           +  ++ T +   +++          T      +   +L T +  + N LE   P E  K+
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKM 374

Query: 299 -KSL-ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVP-LW 355
              L +     + ++  + ++ +       D   + +       V     + T  +P ++
Sbjct: 375 FDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 356 LSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQN 415
           L    KLE                  N  +L    +   NI   F              +
Sbjct: 433 LELKVKLE------------------NEYALHRSIVDHYNIPKTFD------------SD 462

Query: 416 KFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNV--- 472
                  D  F+     +  + ++     L   +FL                +FL     
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--------------DFRFLEQKIR 508

Query: 473 LDLGNNNFAGSIPNQISQLTILERLDLSKNHLSEN 507
            D    N +GSI N       L++L   K ++ +N
Sbjct: 509 HDSTAWNASGSILN------TLQQLKFYKPYICDN 537

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 71/565 (12%), Positives = 151/565 (26%), Gaps = 173/565 (30%)

Query: 60  HNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFS 119
           H+H H        H           Y  +   L+      A+  +F    + D   +  S
Sbjct: 1   HHHHH--------HMDFETGEHQYQYKDI---LSVFED--AFVDNFDCKDVQDMPKSILS 47

Query: 120 S-------QVPPRLGNCSRL------------KSF-----QAGYSNLLRSLPDDIYAAAS 155
                        +    RL            + F     +  Y  L+  +         
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI------KTE 101

Query: 156 LEEPSLHFNKLSGFIS--NDIINLTSLLV-LELYSKELIGSIPRDIGKLTNLKYLLLYRN 212
             +PS+       +I   + + N   +     +   +    + + + +L   K +L+   
Sbjct: 102 QRQPSMMTRM---YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-- 156

Query: 213 NLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLT 272
              G     ++     KT           ++     V    +       M    F L L 
Sbjct: 157 ---G-----VLGSG--KTW----------VAL---DVCLSYKVQC---KMDFKIFWLNLK 190

Query: 273 SCR----LLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL--FLTMNFMNEATPN- 325
           +C     +L  L+    Q++           ++ L     ++ +   L     ++   N 
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRRLLKSKPYENC 246

Query: 326 -------YDQNKISDGFQNLRAVSLAGCQ--LT---GQVPLWLSKLTKLEVLLLSGNQIT 373
                   +  K  + F NL       C+  LT    QV  +LS  T   + L       
Sbjct: 247 LLVLLNVQN-AKAWNAF-NL------SCKILLTTRFKQVTDFLSAATTTHISL------- 291

Query: 374 GSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE------QNKFNRNKPDLPFF 427
                               +    + P+E+    P  +       ++           +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD----NW 347

Query: 428 LFPNQNSTSHQYNRIFG-----LRP----------TIFLANNSLSGRIPAETGQLKFLNV 472
              N +    +   I       L P          ++F  +      IP        L++
Sbjct: 348 KHVNCD----KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA----HIPTIL-----LSL 394

Query: 473 L-DLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQ----GPIPSGGQLH------- 520
           +      +    + N++ + +++E+    ++ +S  ++       + +   LH       
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 521 ----TFPPSSFEGNPE---FCSDIA 538
               TF             F S I 
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIG 478

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 37/269 (13%), Positives = 81/269 (30%), Gaps = 16/269 (5%)

Query: 157 EEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSG 216
              S+ +    G      + L  L    L  +    +         + K  +L ++    
Sbjct: 281 APLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE- 339

Query: 217 SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRL 276
                      L    L  ++    +         +L+ ++        + +L + +   
Sbjct: 340 CWCRDSATDEQLFRCEL--SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP 397

Query: 277 LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATP-NYDQNKIS--- 332
           L   +            + ++   L  +  K L    +      +    +     ++   
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC 457

Query: 333 --DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFA 390
             +    +  + L+  +L   +P  L+ L  LEVL  S N +  ++ G   NLP L    
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELL 514

Query: 391 LSQNNISG----EFPKELSRLQPLVIEQN 415
           L  N +      +      RL  L ++ N
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 51/354 (14%), Positives = 97/354 (27%), Gaps = 53/354 (14%)

Query: 162 HFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSS 221
                       +    + L +       +GS    +  + +   L +      G    S
Sbjct: 238 RAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPS 297

Query: 222 MMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALR 281
            +   +L   +L   L             SQ E + L        +     +   L    
Sbjct: 298 HVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC--WCRDSATDEQLFRCE 355

Query: 282 LACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAV 341
           L+  +    +  E+   K L  +  +N   L   +  M    P   + +    F  L+AV
Sbjct: 356 LSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414

Query: 342 --------SLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQ 393
                        +   +  +   +   + VL L+   +T  +      L  + +  LS 
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSH 472

Query: 394 NNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLAN 453
           N +    P  L+ L+ L                                      +  ++
Sbjct: 473 NRLR-ALPPALAALRCLE------------------------------------VLQASD 495

Query: 454 NSLSGRIPAETGQLKFLNVLDLGNNNFAG-SIPNQISQLTILERLDLSKNHLSE 506
           N+L   +      L  L  L L NN     +    +     L  L+L  N L +
Sbjct: 496 NALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 42/305 (13%), Positives = 80/305 (26%), Gaps = 54/305 (17%)

Query: 101 WNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPS 160
                  M  L    ++    V  R  +     S          SL D +         +
Sbjct: 264 PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWT 323

Query: 161 LHFNKLSGFISN--------DIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRN 212
              ++    +          D      L   EL S E    +  ++     L+ L     
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCEL-SVEKSTVLQSELESCKELQELEPENK 382

Query: 213 NLSGSLPSSMMNCTNL-------KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265
               ++   M     L       +  + +  +     +  +      L    +    +  
Sbjct: 383 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442

Query: 266 SFLLTLTSCRL-----------LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFL 314
             +L L    L           +T L L+ N+L   +PP +  L+ L     + L     
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCL-----EVLQA--- 493

Query: 315 TMNFMNEATPNYDQNKISD-----GFQNLRAVSLAGCQLTG-QVPLWLSKLTKLEVLLLS 368
                         N + +         L+ + L   +L        L    +L +L L 
Sbjct: 494 ------------SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 369 GNQIT 373
           GN + 
Sbjct: 542 GNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 448 TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSEN 507
            + L++N L   +P     L+ L VL   +N    ++   ++ L  L+ L L  N L ++
Sbjct: 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQS 523

Query: 508 NLQGPIPSGGQLHTFPPSSFEGNP 531
               P+ S  +L      + +GN 
Sbjct: 524 AAIQPLVSCPRLVLL---NLQGNS 544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 54/244 (22%)

Query: 154 ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRN 212
            S +   L    L    S+   NL ++  + +     +  +       L+ + ++ +   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 213 NLSGSLPSSM-MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMF-----TGS 266
                +          LK L +                      +++  N +       +
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 267 FLLTLTSCRLLTALRLACNQLEGQIPPEI---IKLKSLILMGCKNLNVLFLTMNFMNEAT 323
           F   L +      L+L  N     +        KL ++ L   K L V+           
Sbjct: 151 F-QGLCN--ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI----------- 195

Query: 324 PNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP-GWFGN 382
                    D F  +                     +   +L +S   +T ++P     +
Sbjct: 196 -------DKDAFGGVY--------------------SGPSLLDVSQTSVT-ALPSKGLEH 227

Query: 383 LPSL 386
           L  L
Sbjct: 228 LKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 36/225 (16%)

Query: 44  LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNH 103
           +PS+        L L   H+   +P ++F  L  +  I +S +     L   + S ++ +
Sbjct: 26  IPSL--PPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSID---VTLQQ-LESHSFYN 78

Query: 104 SFCSMRLLDFSYNDFSSQVPPR-LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
               +  ++       + + P  L     LK     ++  L+  PD              
Sbjct: 79  LS-KVTHIEIRNTRNLTYIDPDALKELPLLKFLGI-FNTGLKMFPDLTK----------- 125

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTN-LKYLLLYRNNLSGSLPS 220
                      + +     +LE+     + SIP +    L N    L LY N  + S+  
Sbjct: 126 -----------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVL-SQLETIDLYINMFT 264
              N T L  + L  N +   +    F  + S    +D+     T
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 23/157 (14%), Positives = 45/157 (28%), Gaps = 21/157 (13%)

Query: 357 SKLTKLEVLLLSGNQITGSIP-GWFGNLPSLFYFALSQNNIS----GEFPKELSRLQPLV 411
             L+K+  + +   +    I       LP L +  +    +                 L 
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILE 136

Query: 412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLN 471
           I  N +  + P   F    N+  T             + L NN  +  +         L+
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLT-------------LKLYNNGFT-SVQGYAFNGTKLD 182

Query: 472 VLDLGNNNFAGSIPNQI--SQLTILERLDLSKNHLSE 506
            + L  N +   I         +    LD+S+  ++ 
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 22/204 (10%)

Query: 201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYI 260
             + + L L   +L      +  N  N+  + +  ++    L +++F  LS++  I++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 261 NMFTGSF-LLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFM 319
                      L    LL  L +    L  ++ P++ K+ S          +L +T N  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGL--KMFPDLTKVYST-----DIFFILEITDNPY 142

Query: 320 NEATPNYDQNKISDGFQNLRAVS----LAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGS 375
             + P        + FQ L   +    L     T  V  +    TKL+ + L+ N+    
Sbjct: 143 MTSIP-------VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTV 194

Query: 376 IP-GWFGNLPS-LFYFALSQNNIS 397
           I    FG + S      +SQ +++
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVT 218

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 68/261 (26%), Positives = 102/261 (39%), Gaps = 56/261 (21%)

Query: 139 YSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI 198
            + + +  PDD    A   + +L    ++  ++ +   L S+  +   + ++  S+   I
Sbjct: 6   STPIKQIFPDDA--FAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDI-KSVQ-GI 59

Query: 199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL 258
             L N++YL L  N L   + + +   TNL  L L GN    +L    F  L+ L+ + L
Sbjct: 60  QYLPNVRYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVL 116

Query: 259 YINMFT----GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFL 314
             N       G F   LT+   LT L LA NQL+  +P  +     L      NL  L L
Sbjct: 117 VENQLQSLPDGVFD-KLTN---LTYLNLAHNQLQ-SLPKGV--FDKLT-----NLTELDL 164

Query: 315 TMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITG 374
           + N                             QL         KLT+L+ L L  NQ+  
Sbjct: 165 SYN-----------------------------QLQSLPEGVFDKLTQLKDLRLYQNQLK- 194

Query: 375 SIP-GWFGNLPSLFYFALSQN 394
           S+P G F  L SL Y  L  N
Sbjct: 195 SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 21/199 (10%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
              +   L  I  +  +++ +     I     L  +  + L  N L          ++  
Sbjct: 33  DAVTQNELNSIDQIIANNSDIKSVQGIQY---LPNVRYLALGGNKLH--------DISAL 81

Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQ--AGYSNLLRSLPDDIYAA-ASLEEP 159
               ++  L  + N   S +P   G   +L + +      N L+SLPD ++    +L   
Sbjct: 82  KELTNLTYLILTGNQLQS-LPN--GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138

Query: 160 SLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSL 218
           +L  N+L          LT+L  L+L   +L  S+P  +  KLT LK L LY+N L  S+
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLK-SV 196

Query: 219 PSSMM-NCTNLKTLNLMGN 236
           P  +    T+L+ + L  N
Sbjct: 197 PDGVFDRLTSLQYIWLHDN 215

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 57/368 (15%), Positives = 110/368 (29%), Gaps = 46/368 (12%)

Query: 49  NLTHISHLNLSHNHVH--GPLPINSF-HFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
           +   I  L +  +         ++      T LE+++      +      + ++A N   
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR- 220

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
            S+  +     +    V       + L+ F  G  N    +P+         +       
Sbjct: 221 -SLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 166 LSGFISNDII--NLTSLLVLELYSKELIG-SIPRDIGKLTNLKYLLLYRNNLSGSLPSSM 222
             G     I+      +  L+L    L        I K  NL+ L          L    
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSV-----------LSQLETIDLYINMFTGSFLLTL 271
             C  LK L +        +      V             +LE + +Y++  T   L ++
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 272 -TSCRLLTALRLA-CNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMN--------- 320
            T  + L   RL   ++ E      +      +L+GCK L      +             
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458

Query: 321 ------------EATPNYDQ--NKISDGFQNLRAVSLAGCQLTGQ-VPLWLSKLTKLEVL 365
                             D+   + S G  NL+ + + GC  + + +   ++KL  L  L
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518

Query: 366 LLSGNQIT 373
            + G + +
Sbjct: 519 WVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 57/435 (13%), Positives = 119/435 (27%), Gaps = 78/435 (17%)

Query: 49  NLTHISHLNLSHNHV-HGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS 107
           NL  +  ++     V    L   +      LE + L   S      GL+ S+  +     
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT-DGLL-SIVTHCR--K 165

Query: 108 MRLLDFSYNDFSSQVPPRLG----NCSRLKSFQAGYSNLLRSLPDDIYAAA----SLEEP 159
           ++ L    + FS +    L     + + L+      +   +  P D+   A    SL   
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 160 SLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSG--S 217
            +   ++   +        +L      S      +P     L   + L     +  G   
Sbjct: 226 KVGDFEILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 218 LPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL------------------- 258
           +P        ++ L+L+  L               LE ++                    
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344

Query: 259 ----------YINMFTGSFLLT-------LTSCRLLTALRLACNQLE-------GQIPPE 294
                        M     L++          C+ L  + +  + +        G     
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404

Query: 295 IIKLKSLILMGCKNLNVLFLTMNFMNEATP---------NYDQNKISD--------GFQN 337
           +   + ++L   + +  L L     +                Q  ++D           N
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464

Query: 338 LRAVSLAGCQLTGQ-VPLWLSKLTKLEVLLLSGNQIT-GSIPGWFGNLPSLFYFALSQNN 395
           +R + L     + + +  +      L+ L + G   +  +I      LPSL Y  +    
Sbjct: 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524

Query: 396 ISGEFPKELSRLQPL 410
            S      +   +P 
Sbjct: 525 ASMTGQDLMQMARPY 539

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 36/198 (18%)

Query: 224 NCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLA 283
              N    NL       +L   +   LS ++  +   +      L  +     L  L L+
Sbjct: 17  GLANAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLS 71

Query: 284 CNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD----GFQNLR 339
            NQ+      ++  LK L       L  L +            ++N++ +        L 
Sbjct: 72  HNQIS-----DLSPLKDL-----TKLEELSV------------NRNRLKNLNGIPSACLS 109

Query: 340 AVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG- 398
            + L   +L     L    L  LE+L +  N++  SI    G L  L    L  N I+  
Sbjct: 110 RLFLDNNELRDTDSL--IHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNT 165

Query: 399 EFPKELSRLQPLVIEQNK 416
                L ++  + +   K
Sbjct: 166 GGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 32/186 (17%)

Query: 327 DQNKISD-----GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFG 381
               I+      G  N    +L    +T  V     +L+ ++      + I  S+ G   
Sbjct: 5   RPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQ-SLAG-MQ 60

Query: 382 NLPSLFYFALSQNNISG-EFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYN 440
              +L    LS N IS     K+L++L+ L + +N+      +L        +      N
Sbjct: 61  FFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK----NLNGIPSACLSRLFLDNN 116

Query: 441 RIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLS 500
            +        L +             LK L +L + NN    SI   +  L+ LE LDL 
Sbjct: 117 ELRDTDS---LIH-------------LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLH 158

Query: 501 KNHLSE 506
            N ++ 
Sbjct: 159 GNEITN 164

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 41/213 (19%), Positives = 83/213 (38%), Gaps = 23/213 (10%)

Query: 44  LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNH 103
           +     L +    NL    V     + S   L+ ++  +   +++   L G+        
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQ-SLAGM-------Q 60

Query: 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
            F +++ L  S+N  S   P  L + ++L+       N L++L  +   +A L    L  
Sbjct: 61  FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR-NRLKNL--NGIPSACLSRLFLDN 115

Query: 164 NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMM 223
           N+L     + +I+L +L +L +     + SI   +G L+ L+ L L+ N ++      + 
Sbjct: 116 NELRD-TDS-LIHLKNLEILSI-RNNKLKSIV-MLGFLSKLEVLDLHGNEITN--TGGLT 169

Query: 224 NCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETI 256
               +  ++L G     N        L    T+
Sbjct: 170 RLKKVNWIDLTGQKCV-NEPVKYQPELYITNTV 201

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 57/215 (26%), Positives = 75/215 (34%), Gaps = 53/215 (24%)

Query: 186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAY 245
             K L  S+P  I    + + L L    L+    ++    T L  LNL  N     LSA 
Sbjct: 22  QGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAG 77

Query: 246 NFSVLSQLETIDLYINMFT----GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL 301
            F  L++L T+ L  N       G F   LT    L  L L  NQL+  +P         
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFD-HLTQ---LDKLYLGGNQLKS-LPS-------- 124

Query: 302 ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL-SKLT 360
                                        + D    L+ + L   QL   +P     KLT
Sbjct: 125 ----------------------------GVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 361 KLEVLLLSGNQITGSIP-GWFGNLPSLFYFALSQN 394
            L+ L LS NQ+  S+P G F  L  L    L  N
Sbjct: 156 NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 54/208 (25%), Positives = 78/208 (37%), Gaps = 60/208 (28%)

Query: 56  LNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSY 115
           L+L    +   L   +F  LT L  ++L YN L         +L                
Sbjct: 40  LDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQ--------TL---------------- 74

Query: 116 NDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDII 175
              S+ V   L     L       +N L SLP  +            F+           
Sbjct: 75  ---SAGVFDDLTELGTL----GLANNQLASLPLGV------------FDH---------- 105

Query: 176 NLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNC-TNLKTLNL 233
            LT L  L L   +L  S+P  +  +LT LK L L  N L  S+P+   +  TNL+TL+L
Sbjct: 106 -LTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSL 162

Query: 234 MGNLFAGNLSAYNFSVLSQLETIDLYIN 261
             N    ++    F  L +L+TI L+ N
Sbjct: 163 STNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 59/354 (16%), Positives = 107/354 (30%), Gaps = 65/354 (18%)

Query: 47  IGNLTHISHLNLSHNHV--HGPLPI-NSFHFLTLLEIIDLSYNSLSGE-LTGLIPSLAWN 102
           +   + I   +L  + +       +         ++ I LS N++  E    L  ++A  
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 103 HSFCSMRLLDFSYNDFSSQVPPR-------LGNCSRLKSFQAGYSNL----LRSLPDDIY 151
                    D        ++P         L  C +L + +   +         L D + 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 152 AAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR 211
               LE   LH N L          +   L     +K+   +          L+ ++  R
Sbjct: 120 KHTPLEHLYLHNNGLG---PQAGAKIARALQELAVNKKAKNA--------PPLRSIICGR 168

Query: 212 NNLSG----SLPSSMMNCTNLKTLNLMGNLF----AGNLSAYNFSVLSQLETIDLYINMF 263
           N L          +  +   L T+ ++ N        +L     +   +L+ +DL  N F
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 264 T--GSFLL--TLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFM 319
           T  GS  L   L S   L  L L    L  +    +  + +   +    L  L L  N +
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV--VDAFSKLENIGLQTLRLQYNEI 286

Query: 320 NEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQIT 373
                        D  + L    +              K+  L  L L+GN+ +
Sbjct: 287 EL-----------DAVRTL-KTVID------------EKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 46/324 (14%), Positives = 93/324 (28%), Gaps = 74/324 (22%)

Query: 155 SLEEPSLHFNKLSG----FISNDIINLTSLLVLELYSKEL----IGSIPRDIGKLTNLKY 206
           S+E  SL  + ++      +   ++   S+  + L    +       +  +I    +L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 207 LLLYRNNLS----------GSLPSSMMNCTNLKTLNLMGNLF----AGNLSAYNFSVLSQ 252
                                L  +++ C  L T+ L  N F       L  +  S  + 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTP 123

Query: 253 LETIDLYINMFT-------------GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLK 299
           LE + L+ N                 +      +   L ++    N+LE       +K  
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE----NGSMKEW 179

Query: 300 SLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQ---NLRAVSLAGCQLT------- 349
           +      + L+ + +  N +        ++ + +G      L+ + L     T       
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGI---EHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236

Query: 350 GQVPLWLSKLTKLEVLLLSGNQITGSIPGW--------FGNLPSLFYFALSQNNISGEFP 401
                 L     L  L L+   ++    G               L    L  N I  +  
Sbjct: 237 AIA---LKSWPNLRELGLNDCLLSAR--GAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291

Query: 402 KELSR--------LQPLVIEQNKF 417
           + L          L  L +  N+F
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRF 315

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 58/365 (15%), Positives = 121/365 (33%), Gaps = 63/365 (17%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSF-HFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS 107
           +  +   L LS         + +       L+ +DL  + +       +      ++   
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT--- 184

Query: 108 MRLLDFSYNDFSSQVPPR-----LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
             L+  + +  +S+V        +  C  LKS       L R++P +  A      P L 
Sbjct: 185 -SLVSLNISCLASEVSFSALERLVTRCPNLKSL-----KLNRAVPLEKLATLLQRAPQLE 238

Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM 222
                G+ +    ++ S L + L                  L+ L  + + +   LP+  
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVAL-------------SGCKELRCLSGFWDAVPAYLPAVY 285

Query: 223 MNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL 282
             C+ L TLNL                  +L+ + +   +      +  ++C+ L  LR+
Sbjct: 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV 345

Query: 283 ACNQLEGQIPPEIIKLKSL--ILMGCKNLNVLF-----------------------LTMN 317
             ++     P   +  + L  + MGC  L  +                          + 
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 318 FMNEATPNYDQNKISD--------GFQNLRAVSLAGCQLTGQVPLWLSK-LTKLEVLLLS 368
            +    P+Y   +  D          ++LR +SL+G  LT +V  ++     K+E+L ++
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVA 464

Query: 369 GNQIT 373
               +
Sbjct: 465 FAGDS 469

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 49/359 (13%), Positives = 106/359 (29%), Gaps = 49/359 (13%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM 108
              ++  L L+       L          LE +     +                    +
Sbjct: 209 RCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSG 168
           R L   ++   + +P     CSRL +    Y+ +              + P L    +  
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ----SYDLVKLLCQCPKLQRLWVLD 323

Query: 169 FISNDII--------NLTSLLVLELYSKELIGSIP-RDIG------KLTNLKYLLLYRNN 213
           +I +  +        +L  L V       +  ++   + G          L+ +L +   
Sbjct: 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383

Query: 214 LSG-SLPSSMMNCTNLKTLNLMG------NLFAGNLSAYNFSVLSQ----LETIDLYINM 262
           ++  +L +   N  N+    L        +          F  + +    L  + L   +
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

Query: 263 FTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL--ILMGCKNLNVLFLT-MNFM 319
               F    T  + +  L +A                 +  +L GC +L  L +    F 
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAG---------DSDLGMHHVLSGCDSLRKLEIRDCPFG 494

Query: 320 NEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS-KLTKLEVLLLSGNQITGSIP 377
           ++A         +   + +R++ ++ C ++      L  K+ KL V ++       S P
Sbjct: 495 DKALL-----ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRP 548

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 19/149 (12%)

Query: 128 NCS--RLKSFQAG----------YSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGFISNDI 174
           +C   R  S  AG          + N +  L   ++ +  +L+E  L  N+L        
Sbjct: 25  DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF 84

Query: 175 INLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNL 233
            +LT L VL+L + +L   +P  +  +L +LK L +  N L+  LP  +   T+L  L L
Sbjct: 85  DSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142

Query: 234 MGN-LFAGNLSAYNFSVLSQLETIDLYIN 261
             N L +    A  F  LS L    L+ N
Sbjct: 143 DQNQLKSIPHGA--FDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGF 169
           L    N  +   P    +   LK      SN L +LP  ++ +   L    L  N+L+  
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLK-ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 170 ISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK 229
            S     L  L  L +   +L   +PR I +LT+L +L L +N L      +    ++L 
Sbjct: 104 PSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 230 TLNLMGN 236
              L GN
Sbjct: 163 HAYLFGN 169

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 72/353 (20%), Positives = 111/353 (31%), Gaps = 80/353 (22%)

Query: 49  NLTHISHLNLSHNHVHGP----LPINSFHFLTLLEIIDLSYNSLSGE-LTGLIPSLAWNH 103
            L  +  L+LS N +       L          LE + L Y SLS      L   L    
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
                + L  S ND +                 AG   L + L D   +   LE   L  
Sbjct: 171 ---DFKELTVSNNDINE----------------AGVRVLCQGLKD---SPCQLEALKLES 208

Query: 164 NKLS----GFISNDIINLTSLLVLELYSKELIGSIPRDIGK-----LTNLKYLLLYRNNL 214
             ++      +   + +  SL  L L S +L      ++        + L+ L ++   +
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

Query: 215 S----GSLPSSMMNCTNLKTLNLMGNLF----AGNLSAYNFSVLSQLETIDLYINMFTG- 265
           +    G L   +    +LK L+L GN      A  L         QLE++ +    FT  
Sbjct: 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328

Query: 266 ---SFLLTLTSCRLLTALRLACNQL--EGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMN 320
               F   L   R L  L+++ N+L   G     + +L   +      L VL+L      
Sbjct: 329 CCSHFSSVLAQNRFLLELQISNNRLEDAG-----VRELCQGLGQPGSVLRVLWL------ 377

Query: 321 EATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQIT 373
                     +SD          + C         L     L  L LS N + 
Sbjct: 378 ------ADCDVSD----------SSCSSLAAT---LLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 61/351 (17%), Positives = 106/351 (30%), Gaps = 69/351 (19%)

Query: 201 LTNLKYLLLYRNNLS----GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ---- 252
           L   + + L    L+      + S++     L  LNL  N     L       + Q    
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN----ELGDVGVHCVLQGLQT 82

Query: 253 ----LETIDLYINMFT----GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILM 304
               ++ + L     T    G    TL +   L  L L+ N L       +  L   +L 
Sbjct: 83  PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLLD 139

Query: 305 GCKNLNVLFLTMNFMNEATPNYDQNKISDGF---QNLRAVSLAGCQLTGQVPLWLSKL-- 359
               L  L L    ++ A+       ++       + + ++++   +       L +   
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEP----LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195

Query: 360 ---TKLEVLLLSGNQIT----GSIPGWFGNLPSLFYFALSQNNISGEFPKELS------- 405
               +LE L L    +T      + G   +  SL   AL  N +      EL        
Sbjct: 196 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 255

Query: 406 -RLQPLVIEQNKF-NRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR---- 459
            RL+ L I +     +   DL   L   ++               + LA N L       
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLK------------ELSLAGNELGDEGARL 303

Query: 460 -IPAETGQLKFLNVLDLGNNNF----AGSIPNQISQLTILERLDLSKNHLS 505
                      L  L + + +F         + ++Q   L  L +S N L 
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 69/422 (16%), Positives = 130/422 (30%), Gaps = 83/422 (19%)

Query: 47  IGNLTHISHLNLSHNHVHGP--------LPINSFHFLTLLEIIDLSYNSLSGE-LTGLIP 97
           +     ++ LNL  N +           L   S      ++ + L    L+G     L  
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK----IQKLSLQNCCLTGAGCGVLSS 107

Query: 98  SLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLE 157
           +L       +++ L  S N         L  C  L   Q                   LE
Sbjct: 108 TLRTL---PTLQELHLSDNLLGDAGLQLL--CEGLLDPQ-----------------CRLE 145

Query: 158 EPSLHFNKLS----GFISNDIINLTSLLVLELYSKELIGSIPRDIGKL-----TNLKYLL 208
           +  L +  LS      +++ +        L + + ++  +  R + +        L+ L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 209 LYRNNLS----GSLPSSMMNCTNLKTLNLMGNLF----AGNLSAYNFSVLSQLETIDLYI 260
           L    ++      L   + +  +L+ L L  N         L        S+L T+ ++ 
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 261 NMFT----GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM 316
              T    G     L +   L  L LA N+L  +       L   +L     L  L++  
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDE---GARLLCETLLEPGCQLESLWVKS 322

Query: 317 NFMNEATPNYDQNKISDGF---QNLRAVSLAGCQLTGQVPLWLSKL-----TKLEVLLLS 368
                A  ++     S      + L  + ++  +L       L +      + L VL L+
Sbjct: 323 CSFTAACCSH----FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378

Query: 369 GNQIT----GSIPGWFGNLPSLFYFALSQNNISGEFPKELS--------RLQPLVIEQNK 416
              ++     S+        SL    LS N +      +L          L+ LV+    
Sbjct: 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438

Query: 417 FN 418
           ++
Sbjct: 439 WS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 54/360 (15%), Positives = 98/360 (27%), Gaps = 87/360 (24%)

Query: 202 TNLKYLLLYRNNLS----GSLPSSMMNCTNLKTLNLMGNLF----AGNLSAYNFSVLSQL 253
             ++ L L    L+    G L S++     L+ L+L  NL        L         +L
Sbjct: 85  CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144

Query: 254 ETIDLYINMFT----GSFLLTLTSCRLLTALRLACNQLEG-------------------- 289
           E + L     +          L +      L ++ N +                      
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 290 -----QIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLA 344
                 +  +  +    I+    +L  L L  N + +         +      LR + + 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 345 GCQLTGQ----VPLWLSKLTKLEVLLLSGNQITGS-----IPGWFGNLPSLFYFALSQNN 395
            C +T +    +   L     L+ L L+GN++                  L    +   +
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 396 ISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNS 455
            +       S     V+ QN+F                               + ++NN 
Sbjct: 325 FTAACCSHFSS----VLAQNRFLL----------------------------ELQISNNR 352

Query: 456 LSGR-----IPAETGQLKFLNVLDLGNNNF----AGSIPNQISQLTILERLDLSKNHLSE 506
           L                  L VL L + +       S+   +     L  LDLS N L +
Sbjct: 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 51/360 (14%), Positives = 102/360 (28%), Gaps = 62/360 (17%)

Query: 78  LEIIDLSYNSLSGE-LTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ----VPPRLGNCSRL 132
           ++ +D+    LS      L+P L         +++       +      +   L     L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLL------QQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 133 KSFQAGYSNL----LRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSK 188
                  + L    +  +         L+ PS    KLS   +  +            + 
Sbjct: 59  AELNLRSNELGDVGVHCV------LQGLQTPSCKIQKLS-LQNCCL------------TG 99

Query: 189 ELIGSIPRDIGKLTNLKYLLLYRNNLSGS-----LPSSMMNCTNLKTLNLMGNLFAGNLS 243
              G +   +  L  L+ L L  N L  +         +     L+ L L     +    
Sbjct: 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 244 AYNFSVLSQ---LETIDLYINMFTGS------FLLTLTSCRLLTALRLACNQLEGQIPPE 294
               SVL      + + +  N    +        L  + C+L   L+L        +  +
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA-LKLESC----GVTSD 214

Query: 295 IIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQ--- 351
             +    I+    +L  L L  N + +         +      LR + +  C +T +   
Sbjct: 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274

Query: 352 -VPLWLSKLTKLEVLLLSGNQITGS-----IPGWFGNLPSLFYFALSQNNISGEFPKELS 405
            +   L     L+ L L+GN++                  L    +   + +       S
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 49/307 (15%), Positives = 88/307 (28%), Gaps = 59/307 (19%)

Query: 47  IGNLTHISHLNLSHNHVHGP--------LPINSFHFLTLLEIIDLSYNSLSGE-LTGLIP 97
           +        L +S+N ++          L  +       LE + L    ++ +    L  
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ----LEALKLESCGVTSDNCRDLCG 221

Query: 98  SLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLE 157
            +A      S+R L    N                     G + L   L   ++ ++ L 
Sbjct: 222 IVASK---ASLRELALGSNKLGD----------------VGMAELCPGL---LHPSSRLR 259

Query: 158 EPSLHFNKLS----GFISNDIINLTSLLVLELYSKELIGSIPRDIGKL-----TNLKYLL 208
              +    ++    G +   +    SL  L L   EL     R + +        L+ L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 209 LYRNNLSG----SLPSSMMNCTNLKTLNLMGNLF----AGNLSAYNFSVLSQLETIDLYI 260
           +   + +        S +     L  L +  N         L        S L  + L  
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 261 NMFT----GSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM 316
              +     S   TL +   L  L L+ N L       I++L   +      L  L L  
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLG---DAGILQLVESVRQPGCLLEQLVLYD 436

Query: 317 NFMNEAT 323
            + +E  
Sbjct: 437 IYWSEEM 443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 2/73 (2%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMM-NCTNLKTLNLMGNLFAGNLSAYNFSVLS 251
                +    NL  L +        L    +     L+ L ++ +     ++   F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 252 QLETIDLYINMFT 264
           +L  ++L  N   
Sbjct: 81  RLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 173 DIINLTSLLVLELYSKELIGSIPR-DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTL 231
            +    +L  L + +++ +  +   D+  L  L+ L + ++ L    P +      L  L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 232 NLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT 264
           NL  N    +LS      LS L+ + L  N   
Sbjct: 86  NLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 10/119 (8%)

Query: 301 LILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLT 360
           L      ++  L L  +  NE         ++D F+ L  +S     LT  +   L KL 
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGK----LEGLTDEFEELEFLSTINVGLT-SIAN-LPKLN 64

Query: 361 KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG----EFPKELSRLQPLVIEQN 415
           KL+ L LS N+++G +       P+L +  LS N I      E  K+L  L+ L +   
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 3/111 (2%)

Query: 152 AAASLEEPSLHFNKLS-GFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLY 210
             + ++E  L  ++ + G +         L  L       + SI  ++ KL  LK L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLST-INVGLTSIA-NLPKLNKLKKLELS 72

Query: 211 RNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
            N +SG L      C NL  LNL GN      +      L  L+++DL+  
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 15/131 (11%)

Query: 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYN 246
             EL    P D+ +L      L    +  G L         L+ L+ +        S  N
Sbjct: 8   HLELRNRTPSDVKELV-----LDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIAN 59

Query: 247 FSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGC 306
              L++L+ ++L  N  +G   +    C  LT L L+ N+++      I  LK L     
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKL----- 112

Query: 307 KNLNVLFLTMN 317
           +NL  L L   
Sbjct: 113 ENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 154 ASLEEPSLHFNKLS-GFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRN 212
           A++ E  L   K + G I        +L  L L     + S+  ++ KL  LK L L  N
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSL-INVGLISVS-NLPKLPKLKKLELSEN 81

Query: 213 NLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
            + G L        NL  LNL GN      +      L  L+++DL+  
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 331 ISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFA 390
           ++  F NL  +SL    L     L   KL KL+ L LS N+I G +      LP+L +  
Sbjct: 44  LTAEFVNLEFLSLINVGLISVSNL--PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101

Query: 391 LSQNNISG----EFPKELSRLQPLVIEQN 415
           LS N +      E  K+L  L+ L +   
Sbjct: 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 12/122 (9%)

Query: 196 RDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLET 255
           R    +  L   L    +  G +        NL+ L+L+        S  N   L +L+ 
Sbjct: 21  RTPAAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKK 75

Query: 256 IDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLT 315
           ++L  N   G   +       LT L L+ N+L+      +  LK L     + L  L L 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKL-----ECLKSLDLF 128

Query: 316 MN 317
             
Sbjct: 129 NC 130

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 18/124 (14%)

Query: 128 NCS--RLKSFQAG----------YSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDII 175
            CS   LK    G            N    +P ++     L    L  N++S  +SN   
Sbjct: 16  RCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSF 74

Query: 176 -NLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLP-SSMMNCTNLKTLN 232
            N+T LL L L    L   IP      L +L+ L L+ N++S  +P  +  + + L  L 
Sbjct: 75  SNMTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLA 132

Query: 233 LMGN 236
           +  N
Sbjct: 133 IGAN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 25/135 (18%)

Query: 291 IPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKIS------DGFQNLRAVSLA 344
           +  E+I+ ++           L L               KI              A+  +
Sbjct: 4   LTAELIE-QAAQYTNAVRDRELDL------------RGYKIPVIENLGATLDQFDAIDFS 50

Query: 345 GCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG----EF 400
             ++          L +L+ LL++ N+I     G    LP L    L+ N++      + 
Sbjct: 51  DNEIRKLDGF--PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP 108

Query: 401 PKELSRLQPLVIEQN 415
              L  L  L I +N
Sbjct: 109 LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 21/107 (19%), Positives = 31/107 (28%), Gaps = 3/107 (2%)

Query: 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNL 214
              E  L   K+   I N    L     ++  S   I  +      L  LK LL+  N +
Sbjct: 20  RDRELDLRGYKIPV-IENLGATLDQFDAIDF-SDNEIRKL-DGFPLLRRLKTLLVNNNRI 76

Query: 215 SGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261
                       +L  L L  N           + L  L  + +  N
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 12/131 (9%)

Query: 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYN 246
           + ELI    +        + L L R      + +          ++   N          
Sbjct: 5   TAELIEQAAQ-YTNAVRDRELDL-RGYKIPVIENLGATLDQFDAIDFSDNEIR---KLDG 59

Query: 247 FSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGC 306
           F +L +L+T+ +  N           +   LT L L  N L      ++  L SL     
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASL----- 112

Query: 307 KNLNVLFLTMN 317
           K+L  L +  N
Sbjct: 113 KSLTYLCILRN 123

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 47/174 (27%)

Query: 226 TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT----GSFLLTLTSCRLLTALR 281
                L L  N F    +   F  L QL  I+   N  T    G+F    +    +  + 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASG---VNEIL 87

Query: 282 LACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAV 341
           L  N+LE  +  ++                 F                    G ++L+ +
Sbjct: 88  LTSNRLEN-VQHKM-----------------F-------------------KGLESLKTL 110

Query: 342 SLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP-GWFGNLPSLFYFALSQN 394
            L   ++T         L+ + +L L  NQIT ++  G F  L SL    L  N
Sbjct: 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 56/184 (30%)

Query: 56  LNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSY 115
           L L++N          F  L  L  I+ S N ++    G     +       +  +  + 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS------GVNEILLTS 90

Query: 116 NDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDII 175
           N              RL++ Q     + + L        SL+   L  N+++        
Sbjct: 91  N--------------RLENVQHK---MFKGLE-------SLKTLMLRSNRIT-------- 118

Query: 176 NLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM 234
                             +  D    L++++ L LY N ++   P +     +L TLNL+
Sbjct: 119 -----------------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161

Query: 235 GNLF 238
            N F
Sbjct: 162 ANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 14/104 (13%)

Query: 327 DQNKIS-------DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP-G 378
             NKI+       +G   +  + L   +L          L  L+ L+L  N+IT  +   
Sbjct: 65  SNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGND 123

Query: 379 WFGNLPSLFYFALSQNNIS----GEFPKELSRLQPLVIEQNKFN 418
            F  L S+   +L  N I+    G F   L  L  L +  N FN
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAF-DTLHSLSTLNLLANPFN 166

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 143 LRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI-GKL 201
           L S+P  I   +S     L  NKL          LT L  L L   ++  S+P  +  KL
Sbjct: 19  LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKL 75

Query: 202 TNLKYLLLYRNNLSGSLPSSMM-NCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYI 260
           T L  L L+ N L  SLP+ +    T LK L L  N    ++    F  L+ L+ I L+ 
Sbjct: 76  TKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 133

Query: 261 N 261
           N
Sbjct: 134 N 134

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 5e-05
 Identities = 32/253 (12%), Positives = 79/253 (31%), Gaps = 37/253 (14%)

Query: 268 LLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNY- 326
           +L       L  + +     EG+   +I            +   LF       E   ++ 
Sbjct: 100 ILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWI 159

Query: 327 DQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFG--NLP 384
           +Q  +S     +  ++    + T  + +       L+ L +    +  S+       +LP
Sbjct: 160 EQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLP 219

Query: 385 SLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFG 444
           +L    L        F  +++  +PL                             +R   
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLF--------------------------SKDRFPN 253

Query: 445 LRPTIFLANNSLSGRIP---AETGQLKFLNVLDLGNNNF----AGSIPNQISQLTILERL 497
           L+  + + +      +     E+  L  L  +D+         A  + + + ++  L+ +
Sbjct: 254 LK-WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 498 DLSKNHLSENNLQ 510
           ++  N+LS+   +
Sbjct: 313 NMKYNYLSDEMKK 325

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 5e-04
 Identities = 31/209 (14%), Positives = 70/209 (33%), Gaps = 16/209 (7%)

Query: 218 LPSSMMNCTNLKTLNLMGNLFAGNLSAYNF-----SVLSQLETIDLYINMFTGSFLLTLT 272
           +  +     + + L      F     ++        VL  +  ++      T +  +   
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK 190

Query: 273 SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKIS 332
               L +L +    L   +  +I+      L   + L +     ++  +   N  +   S
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSD---LPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247

Query: 333 DG-FQNLRAVSLAGCQLTGQVPLWLSK---LTKLEVLLLSGNQITGS----IPGWFGNLP 384
              F NL+ + +   +    V     +   L +LE + +S   +T      +      + 
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307

Query: 385 SLFYFALSQNNISGEFPKELSRLQPLVIE 413
            L +  +  N +S E  KEL +  P+ I+
Sbjct: 308 HLKFINMKYNYLSDEMKKELQKSLPMKID 336

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 8/127 (6%)

Query: 139 YSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRD 197
            +N L+SLP+ ++    SL +  L  NKL    +     LTSL  L L + +L  S+P  
Sbjct: 36  ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNG 94

Query: 198 I-GKLTNLKYLLLYRNNLSGSLPSSMMN-CTNLKTLNLMGN-LFAGNLSAYNFSVLSQLE 254
           +  KLT LK L L  N L  SLP  + +  T LK L L  N L +       F  L+ L+
Sbjct: 95  VFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQ 151

Query: 255 TIDLYIN 261
            I L+ N
Sbjct: 152 YIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGF 169
           LD   N   S         + L        N L+SLP+ ++    SL   +L  N+L   
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLT-QLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 170 ISNDIINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMM-NCTN 227
            +     LT L  L L + +L  S+P  +  KLT LK L LY+N L  S+P  +    T+
Sbjct: 92  PNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTS 149

Query: 228 LKTLNLMGN 236
           L+ + L  N
Sbjct: 150 LQYIWLHDN 158

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 16/124 (12%)

Query: 128 NCS--RLKSFQAG----------YSNLLRSLPDDIY--AAASLEEPSLHFNKLSGFISND 173
           +C+   LK                 N L  +  D        L +  L  N+L+G   N 
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73

Query: 174 IINLTSLLVLELYSKELIGSIPRDI-GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLN 232
               + +  L+L   ++   I   +   L  LK L LY N +S  +P S  +  +L +LN
Sbjct: 74  FEGASHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 233 LMGN 236
           L  N
Sbjct: 133 LASN 136

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 31/207 (14%), Positives = 65/207 (31%), Gaps = 21/207 (10%)

Query: 201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYI 260
           L+          +      +   +   ++ ++L  ++   +      S  S+L+ + L  
Sbjct: 68  LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127

Query: 261 NMFTGSFLLTLTSCRLLTALRLA-CNQLEGQIPPEII----KLKSLILMGCKNL------ 309
              +   + TL     L  L L+ C+         ++    +L  L L  C +       
Sbjct: 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187

Query: 310 --------NVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC-QLTGQVPLWLSKLT 360
                    +  L ++   +     D + +     NL  + L+    L         +L 
Sbjct: 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247

Query: 361 KLEVLLLSG-NQITGSIPGWFGNLPSL 386
            L+ L LS    I        G +P+L
Sbjct: 248 YLQHLSLSRCYDIIPETLLELGEIPTL 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	555
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.58
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.08
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.43
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.02

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-57  Score=498.09  Aligned_cols=531  Identities=30%  Similarity=0.424  Sum_probs=349.3

Q ss_pred             cCCCCceEecccCcceeeccCceeeeeccCCCCCcccc--------------------------CCccccCCCCCCEEEc
Q 040254            5 PAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRY--------------------------HLPSIGNLTHISHLNL   58 (555)
Q Consensus         5 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------------~~~~~~~l~~L~~L~L   58 (555)
                      .-|.....+|.|.++.|. .  ...+.++++.+.+.|.                          ++..|..+++|++|+|
T Consensus        31 ~~W~~~~~~C~w~gv~C~-~--~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~L  107 (768)
T 3rgz_A           31 PDWSSNKNPCTFDGVTCR-D--DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL  107 (768)
T ss_dssp             TTCCTTSCGGGSTTEEEE-T--TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEEC
T ss_pred             cCCCCCCCCcCCcceEEC-C--CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEEC
Confidence            345545578999999887 2  3566666666666554                          2246777777788888


Q ss_pred             cCCcCcCcCch-hHHhcCCCCCEEEccCCcCccccCCCC-ccc-------------------------------------
Q 040254           59 SHNHVHGPLPI-NSFHFLTLLEIIDLSYNSLSGELTGLI-PSL-------------------------------------   99 (555)
Q Consensus        59 ~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~~-------------------------------------   99 (555)
                      ++|.+.+.+|. ..+.++++|++|++++|.+.+..+..+ ..+                                     
T Consensus       108 s~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~  187 (768)
T 3rgz_A          108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG  187 (768)
T ss_dssp             CSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCS
T ss_pred             CCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCC
Confidence            87777765654 145667777777777776664444322 000                                     


Q ss_pred             ------cccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccccccc
Q 040254          100 ------AWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISND  173 (555)
Q Consensus       100 ------~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  173 (555)
                            .....+++|++|++++|.+.+.+|. ++++++|++|++++|.+.+.+|..+.++++|++|++++|.+++..+..
T Consensus       188 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  266 (768)
T 3rgz_A          188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL  266 (768)
T ss_dssp             SEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC
T ss_pred             CcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc
Confidence                  0001345566666666666654444 666777777777777766666777777777777777777766544433


Q ss_pred             ccCCCCCcEEEcccCccccCCCcCccCC-CCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCC
Q 040254          174 IINLTSLLVLELYSKELIGSIPRDIGKL-TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ  252 (555)
Q Consensus       174 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  252 (555)
                        .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++...+..+++
T Consensus       267 --~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~  344 (768)
T 3rgz_A          267 --PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG  344 (768)
T ss_dssp             --CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred             --ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence              66677777777777766667666554 788888888888777777778888888888888887776676555777777


Q ss_pred             CcEEEcccccccccccccccCCC-CCcEEEcccceeccc--------------------------CChhhhhcccc----
Q 040254          253 LETIDLYINMFTGSFLLTLTSCR-LLTALRLACNQLEGQ--------------------------IPPEIIKLKSL----  301 (555)
Q Consensus       253 L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~--------------------------~~~~l~~l~~l----  301 (555)
                      |+.|++++|.+++..+..+..++ +|++|++++|.+.+.                          +|..+..+..+    
T Consensus       345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  424 (768)
T 3rgz_A          345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH  424 (768)
T ss_dssp             CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred             CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence            77777777777655555554443 455555555544443                          33333322211    


Q ss_pred             ------------cccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccC
Q 040254          302 ------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSG  369 (555)
Q Consensus       302 ------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~  369 (555)
                                  .+..+++|+.|++++|.+.+..+..+     ..+++|++|++++|++++.+|.++..+++|++|++++
T Consensus       425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  499 (768)
T 3rgz_A          425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-----MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN  499 (768)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH-----cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC
Confidence                        12233444444554444444433333     4567778888888877777777788888888888888


Q ss_pred             CccccccCccccCCCCCcEEEccCccCccccchhhhc---cccchhhhccCCCCCCCCCccccCC--C------------
Q 040254          370 NQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSR---LQPLVIEQNKFNRNKPDLPFFLFPN--Q------------  432 (555)
Q Consensus       370 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~~~~~~~~~~~~l~~~~~~~--~------------  432 (555)
                      |++.+.+|..+..+++|++|++++|++++.+|..+..   |+.|++.+|.+....+   ......  .            
T Consensus       500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip---~~~~~~~~~~~~~~~~~~~~~  576 (768)
T 3rgz_A          500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP---AAMFKQSGKIAANFIAGKRYV  576 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC---GGGGTTTTCBCCSTTCSCEEE
T ss_pred             CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC---hHHhcccchhhhhcccccccc
Confidence            8888778888888888888888888888777766544   5556666666542211   000000  0            


Q ss_pred             ----------------------------------cccccccc----------cccCCCCEEEccCccccccCChhccCCC
Q 040254          433 ----------------------------------NSTSHQYN----------RIFGLRPTIFLANNSLSGRIPAETGQLK  468 (555)
Q Consensus       433 ----------------------------------~~~~~~~~----------~~~~~~~~l~L~~n~l~~~~~~~~~~l~  468 (555)
                                                        .......+          ........||+++|++++.+|..++.++
T Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  656 (768)
T 3rgz_A          577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP  656 (768)
T ss_dssp             EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence                                              00000000          0012345788888888888888888888


Q ss_pred             CCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC-------------------CCcceecCCCCCCCCCCCCCccCC
Q 040254          469 FLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS-------------------ENNLQGPIPSGGQLHTFPPSSFEG  529 (555)
Q Consensus       469 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-------------------~~~l~~~ip~~~~~~~l~~~~~~g  529 (555)
                      .|++|+|++|++++.+|..++.+++|+.|||++|+++                   +|+++|.||...++.++...+|.|
T Consensus       657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g  736 (768)
T 3rgz_A          657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN  736 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCS
T ss_pred             cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcC
Confidence            8888888888888888888888888888888888877                   578889999999999999999999


Q ss_pred             CcCCCCcccCCCCCCCCCCCc
Q 040254          530 NPEFCSDIANRSSTTEPRTTT  550 (555)
Q Consensus       530 Np~~c~~~~~~~~~~~~~~~~  550 (555)
                      ||.+||.|+. .|....+++-
T Consensus       737 N~~Lcg~~l~-~C~~~~~~~~  756 (768)
T 3rgz_A          737 NPGLCGYPLP-RCDPSNADGY  756 (768)
T ss_dssp             CTEEESTTSC-CCCSCC----
T ss_pred             CchhcCCCCc-CCCCCccCCC
Confidence            9999999886 8988777653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.7e-50  Score=426.64  Aligned_cols=476  Identities=18%  Similarity=0.161  Sum_probs=394.7

Q ss_pred             ccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCcccccc
Q 040254           23 NHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN  102 (555)
Q Consensus        23 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~  102 (555)
                      ...+..+..+++++|.|++..+.+|.++++|++|+|++|.+. .+++..|.++++|++|++++|++++..|..+..    
T Consensus        29 ~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----  103 (606)
T 3t6q_A           29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSG----  103 (606)
T ss_dssp             TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSS----
T ss_pred             CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcc----
Confidence            334567899999999999999999999999999999999998 676678999999999999999999887777764    


Q ss_pred             CCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCc-
Q 040254          103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLL-  181 (555)
Q Consensus       103 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~-  181 (555)
                        +++|++|++++|.+++..+..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ 
T Consensus       104 --l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3t6q_A          104 --PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN  181 (606)
T ss_dssp             --CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred             --cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence              45999999999999976678899999999999999988774434555699999999999999998888899999999 


Q ss_pred             -EEEcccCccccCCCcCccCC---------------------------------------------------CCCCeeeC
Q 040254          182 -VLELYSKELIGSIPRDIGKL---------------------------------------------------TNLKYLLL  209 (555)
Q Consensus       182 -~L~L~~n~~~~~~~~~l~~l---------------------------------------------------~~L~~L~L  209 (555)
                       .|++++|.+.+..+..+...                                                   .+|+.|++
T Consensus       182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l  261 (606)
T 3t6q_A          182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL  261 (606)
T ss_dssp             EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred             eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence             89999999887766554321                                                   16778888


Q ss_pred             ccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecc
Q 040254          210 YRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG  289 (555)
Q Consensus       210 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  289 (555)
                      ++|.+.+..+..+..+++|++|++++|.+. .++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCC-SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred             ecCccCccCHHHhccccCCCEEeccCCccC-CCC-hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence            888888777777899999999999999988 666 357889999999999999988878888999999999999998876


Q ss_pred             cCChhhhhcccccccCCCCCcEEEeccccCCCCC--CccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEc
Q 040254          290 QIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEAT--PNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLL  367 (555)
Q Consensus       290 ~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  367 (555)
                      .++..       .+..+++|+.+++++|.+....  +..+     ..+++|++|++++|++.+..+..+..+++|++|++
T Consensus       340 ~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          340 ELGTG-------CLENLENLRELDLSHDDIETSDCCNLQL-----RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL  407 (606)
T ss_dssp             BCCSS-------TTTTCTTCCEEECCSSCCCEEEESTTTT-----TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred             ccchh-------hhhccCcCCEEECCCCccccccCcchhc-----ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence            55443       2556789999999999987764  3333     67889999999999998888889999999999999


Q ss_pred             cCCccccccCc-cccCCCCCcEEEccCccCccccchh---hhccccchhhhccCCCCCCCCCccccCCCccccccccccc
Q 040254          368 SGNQITGSIPG-WFGNLPSLFYFALSQNNISGEFPKE---LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIF  443 (555)
Q Consensus       368 ~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  443 (555)
                      ++|++.+..+. .+..+++|++|++++|.+.+..+..   +.+|+.|++.+|.+.......+            ......
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------~~~~~l  475 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT------------NSLQTL  475 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS------------CGGGGC
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc------------hhhccC
Confidence            99999876554 4889999999999999998776655   4567778888887643110000            001112


Q ss_pred             CCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC-CCCCCC
Q 040254          444 GLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG-GQLHTF  522 (555)
Q Consensus       444 ~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~~~~~l  522 (555)
                      ...+.|++++|++++..|..+..+++|++|++++|++++..|+.+..+++| +|++++|+++     +..|.. ..+..+
T Consensus       476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~-----~~~~~~~~~l~~L  549 (606)
T 3t6q_A          476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS-----IILPSLLPILSQQ  549 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC-----CCCGGGHHHHHTS
T ss_pred             CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc-----ccCHhhcccCCCC
Confidence            334579999999999889999999999999999999999999999999999 9999999997     344432 346678


Q ss_pred             CCCccCCCcCCCCcc
Q 040254          523 PPSSFEGNPEFCSDI  537 (555)
Q Consensus       523 ~~~~~~gNp~~c~~~  537 (555)
                      ..++++||||.|+++
T Consensus       550 ~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          550 RTINLRQNPLDCTCS  564 (606)
T ss_dssp             SEEECTTCCEECSGG
T ss_pred             CEEeCCCCCccccCC
Confidence            899999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.1e-49  Score=431.38  Aligned_cols=454  Identities=28%  Similarity=0.445  Sum_probs=358.5

Q ss_pred             eeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCC
Q 040254           27 FNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC  106 (555)
Q Consensus        27 ~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  106 (555)
                      ..+..+++++|.+++.+|. |.++++|++|++++|.+.+.+| ..|..+++|++|++++|++++..|..        .++
T Consensus       200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~  269 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL--------PLK  269 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC--------CCT
T ss_pred             CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc--------ccC
Confidence            4566677777777777776 8888888888888888775444 45677888888888888877654432        345


Q ss_pred             CccEEEccCCcCCccCCccccCC-CCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccc-cccCCCCCcEEE
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNC-SRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISN-DIINLTSLLVLE  184 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~  184 (555)
                      +|++|++++|.+++.+|..+... ++|++|++++|.+.+.+|..+.++++|++|++++|.+++..+. .+..+++|++|+
T Consensus       270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~  349 (768)
T 3rgz_A          270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD  349 (768)
T ss_dssp             TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred             CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence            88888888888887777777664 8888888888888888888888888888888888888755554 488888888888


Q ss_pred             cccCccccCCCcCccCCC-CCCeeeCccCcCcccCCccccC--CCCCCEEECcCccCccccCcccccCCCCCcEEEcccc
Q 040254          185 LYSKELIGSIPRDIGKLT-NLKYLLLYRNNLSGSLPSSMMN--CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN  261 (555)
Q Consensus       185 L~~n~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~--~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  261 (555)
                      +++|.+.+.+|..+..++ +|++|++++|.+.+..+..+..  +++|++|++++|.+.+.++ ..+..+++|+.|++++|
T Consensus       350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N  428 (768)
T 3rgz_A          350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFN  428 (768)
T ss_dssp             CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-GGGGGCTTCCEEECCSS
T ss_pred             CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC-HHHhcCCCCCEEECcCC
Confidence            888888878888777776 8888888888888777766665  7788889998888876665 56788888999999998


Q ss_pred             cccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEE
Q 040254          262 MFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAV  341 (555)
Q Consensus       262 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L  341 (555)
                      .+++..+..+..+++|++|++++|.+.+.+|..+.        .+++|+.|++++|.+.+..+..+     ..+++|++|
T Consensus       429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--------~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L  495 (768)
T 3rgz_A          429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--------YVKTLETLILDFNDLTGEIPSGL-----SNCTNLNWI  495 (768)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEE
T ss_pred             cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--------CCCCceEEEecCCcccCcCCHHH-----hcCCCCCEE
Confidence            88888888888888999999999888877777654        45689999999999998877665     778999999


Q ss_pred             EccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchh---------
Q 040254          342 SLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVI---------  412 (555)
Q Consensus       342 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~---------  412 (555)
                      ++++|++++.+|.+++.+++|++|++++|++.+.+|..+..+++|++|++++|++++.+|..+.....+..         
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~  575 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY  575 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999888876544221110         


Q ss_pred             ----------------------------------------hhccCCCCCCCCCccccCCCcccccccccc----------
Q 040254          413 ----------------------------------------EQNKFNRNKPDLPFFLFPNQNSTSHQYNRI----------  442 (555)
Q Consensus       413 ----------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------  442 (555)
                                                              ..+.+.... ...+.....+..++++.+.+          
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~-~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  654 (768)
T 3rgz_A          576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT-SPTFDNNGSMMFLDMSYNMLSGYIPKEIGS  654 (768)
T ss_dssp             EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC-CCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccceecccC-chhhhccccccEEECcCCcccccCCHHHhc
Confidence                                                    001100000 00111122333333333322          


Q ss_pred             cCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          443 FGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       443 ~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      ....+.|++++|++++.+|..++.+++|++|||++|++++.+|..+..+++|++|||++|+++
T Consensus       655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            233458999999999999999999999999999999999999999999999999999999997

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.9e-48  Score=421.40  Aligned_cols=511  Identities=19%  Similarity=0.180  Sum_probs=320.5

Q ss_pred             CceEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCc
Q 040254            9 GQIISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNS   87 (555)
Q Consensus         9 ~~~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   87 (555)
                      +..+.|..... .++...+..+..+++++|.+++..+..|.++++|++|++++|.+. .+++..|.++++|++|++++|+
T Consensus         6 ~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSC
T ss_pred             CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCc
Confidence            56788877665 344444568899999999999988889999999999999999998 5666788899999999999999


Q ss_pred             CccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCc
Q 040254           88 LSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS  167 (555)
Q Consensus        88 i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~  167 (555)
                      ++...+..|..      +++|++|++++|.+++..+..|+++++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus        85 l~~l~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           85 LSQLSDKTFAF------CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             CCCCCTTTTTT------CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             cCccChhhhcc------CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence            98766555653      458999999999988766678889999999999988888777777888888888888888887


Q ss_pred             cccccccc--CCCCCcEEEcccCccccCCCcCccCC---------------------------CCCCeeeCccCcCcccC
Q 040254          168 GFISNDII--NLTSLLVLELYSKELIGSIPRDIGKL---------------------------TNLKYLLLYRNNLSGSL  218 (555)
Q Consensus       168 ~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~  218 (555)
                      +..+..+.  .+++|++|++++|.+.+..+..+..+                           ++|+.|++++|.+.+..
T Consensus       159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~  238 (680)
T 1ziw_A          159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS  238 (680)
T ss_dssp             CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred             ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence            76655443  45677777777777665555443322                           23344444444444333


Q ss_pred             CccccCCCC--CCEEECcCccCccccCcccccCCCCCcEEEccccccccccccc--------------------------
Q 040254          219 PSSMMNCTN--LKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLT--------------------------  270 (555)
Q Consensus       219 ~~~l~~~~~--L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------------------------  270 (555)
                      +.++..++.  |++|++++|.+.+ ++...+..+++|+.|++++|.+.+..+..                          
T Consensus       239 ~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l  317 (680)
T 1ziw_A          239 NTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL  317 (680)
T ss_dssp             TTTTGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred             hhHhhccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence            334433322  4444444444442 22233444444444444444444333333                          


Q ss_pred             -------ccCCCCCcEEEcccceecccCChhhhh---cccccccCC-----------------CCCcEEEeccccCCCCC
Q 040254          271 -------LTSCRLLTALRLACNQLEGQIPPEIIK---LKSLILMGC-----------------KNLNVLFLTMNFMNEAT  323 (555)
Q Consensus       271 -------l~~~~~L~~L~l~~n~~~~~~~~~l~~---l~~l~~~~~-----------------~~L~~L~l~~n~~~~~~  323 (555)
                             +..+++|++|++++|.+.+..+..+..   ++.+.++++                 ++|+.+++++|.+....
T Consensus       318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~  397 (680)
T 1ziw_A          318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE  397 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred             cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence                   344455555555555554433333222   112222111                 24445555555554443


Q ss_pred             CccccccccCCCCCccEEEccCcccccccc-hhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc--ccc
Q 040254          324 PNYDQNKISDGFQNLRAVSLAGCQLTGQVP-LWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS--GEF  400 (555)
Q Consensus       324 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~  400 (555)
                      +..+     ..+++|+.|++++|.+.+.++ ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+.  +..
T Consensus       398 ~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  472 (680)
T 1ziw_A          398 SDAF-----SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS  472 (680)
T ss_dssp             TTTT-----TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred             hhhh-----hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence            3333     445556666666665554333 45555566666666666555544555555555555555555543  233


Q ss_pred             chh---hhccccchhhhccCCCCCCCCCccccCCCcccccccccc------------------cCCCCEEEccCcccccc
Q 040254          401 PKE---LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRI------------------FGLRPTIFLANNSLSGR  459 (555)
Q Consensus       401 ~~~---~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~l~L~~n~l~~~  459 (555)
                      |..   +.+++.|++++|.+...... .+...+.++.+.+..+.+                  ....+.|++++|+++..
T Consensus       473 p~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred             CcccccCCCCCEEECCCCCCCcCChh-hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence            332   23455555566555443321 111222233332222221                  12345899999999855


Q ss_pred             CChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC-C-CCCCCCCCccCCCcCCCCcc
Q 040254          460 IPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG-G-QLHTFPPSSFEGNPEFCSDI  537 (555)
Q Consensus       460 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~-~~~~l~~~~~~gNp~~c~~~  537 (555)
                      .+..|.++++|++|++++|++++..+..|..+++|+.|+|++|+|+     +..|.. . .+..+..++++||||.|++.
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-----SVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC-----BCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC-----ccChhHhcccccccCEEEccCCCcccCCc
Confidence            5556888999999999999999777777888899999999999887     222221 1 45678889999999999986


Q ss_pred             c
Q 040254          538 A  538 (555)
Q Consensus       538 ~  538 (555)
                      .
T Consensus       627 ~  627 (680)
T 1ziw_A          627 S  627 (680)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.2e-48  Score=411.87  Aligned_cols=475  Identities=18%  Similarity=0.143  Sum_probs=364.6

Q ss_pred             eEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCc
Q 040254           11 IISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS   89 (555)
Q Consensus        11 ~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~   89 (555)
                      .+.|++... .++...+..+..+++++|.+++..+..|.++++|++|++++|.+. .+++..|.++++|++|++++|+++
T Consensus        15 ~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~   93 (606)
T 3vq2_A           15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQ   93 (606)
T ss_dssp             EEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC
T ss_pred             ceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCccc
Confidence            455655444 444445678899999999999999999999999999999999998 677778999999999999999999


Q ss_pred             cccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeecccCcc
Q 040254           90 GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNKLSG  168 (555)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~  168 (555)
                      +..|..|..      +++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++
T Consensus        94 ~~~p~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           94 SFSPGSFSG------LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCCTTSSTT------CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             ccChhhcCC------cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            887877764      4599999999999997666889999999999999998876 579999999999999999999999


Q ss_pred             cccccccCCCCCc----EEEcccCccccCCCcCccCCCCCCeeeCccCcCc-----------------------------
Q 040254          169 FISNDIINLTSLL----VLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS-----------------------------  215 (555)
Q Consensus       169 ~~~~~~~~l~~L~----~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-----------------------------  215 (555)
                      ..+..+..+++|+    +|++++|.+....+..+... +|+.|++++|.+.                             
T Consensus       168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  246 (606)
T 3vq2_A          168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN  246 (606)
T ss_dssp             ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             cChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence            8888777766654    79999998876666555544 7888888877653                             


Q ss_pred             -----------------------------ccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254          216 -----------------------------GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS  266 (555)
Q Consensus       216 -----------------------------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  266 (555)
                                                   +..+. +..+++|++|++++|.+. .++  .+..+++|+.|++++|.+. .
T Consensus       247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~-~  321 (606)
T 3vq2_A          247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLK-Q  321 (606)
T ss_dssp             CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCS-S
T ss_pred             ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccCc-c
Confidence                                         11222 455677888888888775 455  5777788888888888884 3


Q ss_pred             ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCC--CccccccccCCCCCccEEEcc
Q 040254          267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEAT--PNYDQNKISDGFQNLRAVSLA  344 (555)
Q Consensus       267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~L~~L~l~  344 (555)
                      .+ .+ .+++|++|++++|+..+..          .+..+++|+.+++++|.++...  +..+     ..+++|++|+++
T Consensus       322 lp-~~-~l~~L~~L~l~~n~~~~~~----------~~~~l~~L~~L~ls~n~l~~~~~~~~~~-----~~~~~L~~L~L~  384 (606)
T 3vq2_A          322 FP-TL-DLPFLKSLTLTMNKGSISF----------KKVALPSLSYLDLSRNALSFSGCCSYSD-----LGTNSLRHLDLS  384 (606)
T ss_dssp             CC-CC-CCSSCCEEEEESCSSCEEC----------CCCCCTTCCEEECCSSCEEEEEECCHHH-----HCCSCCCEEECC
T ss_pred             cc-cC-CCCccceeeccCCcCccch----------hhccCCCCCEEECcCCccCCCcchhhhh-----ccCCcccEeECC
Confidence            44 34 7788888888887543221          2446677888888887776542  2222     566778888888


Q ss_pred             CcccccccchhhhCCCCCcEEEccCCccccccC-ccccCCCCCcEEEccCccCccccchhh---hccccchhhhccCCCC
Q 040254          345 GCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP-GWFGNLPSLFYFALSQNNISGEFPKEL---SRLQPLVIEQNKFNRN  420 (555)
Q Consensus       345 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~~~~~~~~~  420 (555)
                      +|.+++ ++..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+++..|..+   .+|+.|++.+|.+...
T Consensus       385 ~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  463 (606)
T 3vq2_A          385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN  463 (606)
T ss_dssp             SCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence            887763 55677777788888888888776655 567777888888888888776665544   4556666666655431


Q ss_pred             --CCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeee
Q 040254          421 --KPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLD  498 (555)
Q Consensus       421 --~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  498 (555)
                        +..+                ......+.|++++|++++..|..+.++++|++|++++|++++.+|..+..+++|++|+
T Consensus       464 ~~~~~~----------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          464 TLSNVF----------------ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             EECSCC----------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred             chHHhh----------------ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence              1110                0112234799999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcceecCCCC-CCCC-CCCCCccCCCcCCCCccc
Q 040254          499 LSKNHLSENNLQGPIPSG-GQLH-TFPPSSFEGNPEFCSDIA  538 (555)
Q Consensus       499 Ls~N~l~~~~l~~~ip~~-~~~~-~l~~~~~~gNp~~c~~~~  538 (555)
                      |++|+|+      .+|.. ..+. ++..++++||||.|++++
T Consensus       528 l~~N~l~------~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          528 CSFNRIE------TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CTTSCCC------CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCCcCc------ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999997      34443 2333 478889999999998865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-47  Score=422.04  Aligned_cols=484  Identities=19%  Similarity=0.203  Sum_probs=341.1

Q ss_pred             CCceEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCC
Q 040254            8 GGQIISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN   86 (555)
Q Consensus         8 ~~~~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   86 (555)
                      .|..+.|+.... .++. .+..+..+++++|.|++..+.+|.++++|++|+|++|...+.+++..|.++++|++|+|++|
T Consensus         5 ~~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            5 DGRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             TTEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            367788877766 4454 67889999999999999999999999999999999997666888888999999999999999


Q ss_pred             cCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc--ccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeec
Q 040254           87 SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR--LGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHF  163 (555)
Q Consensus        87 ~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~  163 (555)
                      .+++..|+.|..      +++|++|++++|.+++..+..  +.++++|++|++++|.+.+..+ ..|.++++|++|++++
T Consensus        84 ~l~~~~p~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A           84 KIYFLHPDAFQG------LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             CCCEECTTSSCS------CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred             cCcccCHhHccC------CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence            999888888765      449999999999998755554  8999999999999999877654 6799999999999999


Q ss_pred             ccCcccccccccCC--CCCcEEEcccCccccCCCcCccCCCC------CCeeeCccCcCcccCCccccC-----------
Q 040254          164 NKLSGFISNDIINL--TSLLVLELYSKELIGSIPRDIGKLTN------LKYLLLYRNNLSGSLPSSMMN-----------  224 (555)
Q Consensus       164 n~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~-----------  224 (555)
                      |.+++..+..+..+  ++|+.|++++|.+.+..+..+..+++      |+.|++++|.+.+..+..+..           
T Consensus       158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~  237 (844)
T 3j0a_A          158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI  237 (844)
T ss_dssp             SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred             CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence            99998888888877  88999999999988877766665554      899999988765443332221           


Q ss_pred             ---------------------------CCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCC
Q 040254          225 ---------------------------CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLL  277 (555)
Q Consensus       225 ---------------------------~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  277 (555)
                                                 .++|++|++++|.+.+ +....+..+++|+.|++++|.+.+..+..+..+++|
T Consensus       238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  316 (844)
T 3j0a_A          238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL  316 (844)
T ss_dssp             CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred             cccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence                                       1467777777776663 333556677777777777777776666667777777


Q ss_pred             cEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhh
Q 040254          278 TALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS  357 (555)
Q Consensus       278 ~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  357 (555)
                      ++|++++|.+.+..+..        +..+++|+.|++++|.+....+..+     ..+++|+.|++++|.+++ +    .
T Consensus       317 ~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~Ls~N~l~~-i----~  378 (844)
T 3j0a_A          317 QVLNLSYNLLGELYSSN--------FYGLPKVAYIDLQKNHIAIIQDQTF-----KFLEKLQTLDLRDNALTT-I----H  378 (844)
T ss_dssp             CEEEEESCCCSCCCSCS--------CSSCTTCCEEECCSCCCCCCCSSCS-----CSCCCCCEEEEETCCSCC-C----S
T ss_pred             CEEECCCCCCCccCHHH--------hcCCCCCCEEECCCCCCCccChhhh-----cCCCCCCEEECCCCCCCc-c----c
Confidence            77777777766443433        3344566666666666665554433     555666666666666552 1    1


Q ss_pred             CCCCCcEEEccCCccccccCcc----------------------ccCCCCCcEEEccCccCccc----cchhhhccccch
Q 040254          358 KLTKLEVLLLSGNQITGSIPGW----------------------FGNLPSLFYFALSQNNISGE----FPKELSRLQPLV  411 (555)
Q Consensus       358 ~l~~L~~L~L~~n~l~~~~~~~----------------------~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~  411 (555)
                      .+++|+.|++++|++. .+|..                      +..+++|++|++++|++++.    .+....+|+.|+
T Consensus       379 ~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~  457 (844)
T 3j0a_A          379 FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF  457 (844)
T ss_dssp             SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCE
T ss_pred             CCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccccc
Confidence            2445555555555554 22221                      22444555555555554421    112234444445


Q ss_pred             hhhccCCCCCCC-CCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhC
Q 040254          412 IEQNKFNRNKPD-LPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQ  490 (555)
Q Consensus       412 ~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  490 (555)
                      +++|.+...+.. .....          +. .....+.|+|++|++++..|..|.++++|++|+|++|+|++..+..+. 
T Consensus       458 Ls~N~l~~~~~~~~~~~~----------~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-  525 (844)
T 3j0a_A          458 LGENMLQLAWETELCWDV----------FE-GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-  525 (844)
T ss_dssp             EESCCCSSSCCSCCCSSC----------SS-CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-
T ss_pred             CCCCccccccccccchhh----------hc-CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-
Confidence            444444322210 00000          00 012223688888888888888888888899999999988876666555 


Q ss_pred             CccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCccc
Q 040254          491 LTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIA  538 (555)
Q Consensus       491 l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~~~  538 (555)
                       ++|+.|||++|+|+     +.+|.  .+..+..++++||||.|++.+
T Consensus       526 -~~L~~L~Ls~N~l~-----~~~~~--~~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          526 -ANLEILDISRNQLL-----APNPD--VFVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             -SCCCEEEEEEECCC-----CCCSC--CCSSCCEEEEEEECCCCSSSC
T ss_pred             -ccccEEECCCCcCC-----CCChh--HhCCcCEEEecCCCccccccc
Confidence             78889999988886     55564  366788899999999997653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-46  Score=397.08  Aligned_cols=481  Identities=18%  Similarity=0.159  Sum_probs=333.0

Q ss_pred             CCceEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCC
Q 040254            8 GGQIISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN   86 (555)
Q Consensus         8 ~~~~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   86 (555)
                      ++..+.|...+. ..+...+..+..+++++|.+++..+.+|..+++|++|++++|.+. .+++..|.++++|++|++++|
T Consensus         8 ~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A            8 PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             CCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCC
Confidence            456678877665 444455667889999999999999999999999999999999998 788888999999999999999


Q ss_pred             cCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeeccc
Q 040254           87 SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNK  165 (555)
Q Consensus        87 ~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~  165 (555)
                      ++++..+..|..      +++|++|++++|.+++..+..++++++|++|++++|.+.. .+|..+.++++|++|++++|.
T Consensus        87 ~l~~~~~~~~~~------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A           87 PIQSLALGAFSG------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             CCCEECTTTTTT------CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             cCCccCHhhhcC------ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            999877777764      4599999999999997555579999999999999998876 478999999999999999999


Q ss_pred             CcccccccccCCCCC----cEEEcccCccccCCCcCccCCCCCCeeeCccCcCcc-cCCccccCCCC-------------
Q 040254          166 LSGFISNDIINLTSL----LVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSG-SLPSSMMNCTN-------------  227 (555)
Q Consensus       166 i~~~~~~~~~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~~~~-------------  227 (555)
                      +++..+..+..+++|    +.|++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.             
T Consensus       161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred             cceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence            999888888888888    899999999988888777665 79999988873210 01111111111             


Q ss_pred             -------------------CCEEECcCc-cCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEccccee
Q 040254          228 -------------------LKTLNLMGN-LFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQL  287 (555)
Q Consensus       228 -------------------L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~  287 (555)
                                         ++.+++.++ .+.+..+ ..+..+++|+.|++++|.+.+ .+..+..+ +|++|++++|.+
T Consensus       240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~  316 (570)
T 2z63_A          240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKF  316 (570)
T ss_dssp             CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBC
T ss_pred             chhhhhcchhhhccccccchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcc
Confidence                               222333332 2221122 345555666666666666653 34444455 666666666655


Q ss_pred             cccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccccccc--chhhhCCCCCcEE
Q 040254          288 EGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQV--PLWLSKLTKLEVL  365 (555)
Q Consensus       288 ~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L  365 (555)
                      . .+|.          ..+++|+.+++++|.+....+.       ..+++|++|++++|.+++..  +..+..+++|++|
T Consensus       317 ~-~l~~----------~~l~~L~~L~l~~n~~~~~~~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  378 (570)
T 2z63_A          317 G-QFPT----------LKLKSLKRLTFTSNKGGNAFSE-------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL  378 (570)
T ss_dssp             S-SCCB----------CBCSSCCEEEEESCBSCCBCCC-------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred             c-ccCc----------ccccccCEEeCcCCcccccccc-------ccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence            5 2222          1234556666666555443322       33455666666666555332  4555556666666


Q ss_pred             EccCCccccccCccccCCCCCcEEEccCccCccccc----hhhhccccchhhhccCCCCCCCCCccccCCCccccccccc
Q 040254          366 LLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP----KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR  441 (555)
Q Consensus       366 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  441 (555)
                      ++++|++.+..+. +..+++|++|++++|.+.+..+    ..+.+++.|++++|.+....... +              .
T Consensus       379 ~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~--------------~  442 (570)
T 2z63_A          379 DLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-F--------------N  442 (570)
T ss_dssp             ECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT-T--------------T
T ss_pred             ECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh-h--------------h
Confidence            6666665533332 5556666666666665554332    22344455555554432211100 0              0


Q ss_pred             ccCCCCEEEccCcccc-ccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC-CCC
Q 040254          442 IFGLRPTIFLANNSLS-GRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG-GQL  519 (555)
Q Consensus       442 ~~~~~~~l~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~~~  519 (555)
                      .....+.|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|+++     +..|.. ..+
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l  517 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-----SVPDGIFDRL  517 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-----CCCTTTTTTC
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC-----CCCHHHhhcc
Confidence            0112236999999998 578888999999999999999999888999999999999999999987     333332 456


Q ss_pred             CCCCCCccCCCcCCCCccc
Q 040254          520 HTFPPSSFEGNPEFCSDIA  538 (555)
Q Consensus       520 ~~l~~~~~~gNp~~c~~~~  538 (555)
                      ..+..+++++||+.|+++.
T Consensus       518 ~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          518 TSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTCCEEECCSSCBCCCTTT
T ss_pred             cCCcEEEecCCcccCCCcc
Confidence            7888899999999998753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.9e-45  Score=392.59  Aligned_cols=444  Identities=19%  Similarity=0.153  Sum_probs=367.1

Q ss_pred             ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254           26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF  105 (555)
Q Consensus        26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  105 (555)
                      ...+..+++++|.+++..|..|.++++|++|+|++|.+. .+++..|..+++|++|++++|++++..+..+.      .+
T Consensus        56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~------~l  128 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLH------NQ  128 (606)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCT------TC
T ss_pred             CccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcchhc------cC
Confidence            446788999999999999999999999999999999998 56666799999999999999999976565554      45


Q ss_pred             CCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCC--eeEeecccCcccccccccCC------
Q 040254          106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLE--EPSLHFNKLSGFISNDIINL------  177 (555)
Q Consensus       106 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~--~L~l~~n~i~~~~~~~~~~l------  177 (555)
                      ++|++|++++|.+++.....+..+++|++|++++|.+....+..+..+++|+  +|++++|.+++..+..+...      
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~  208 (606)
T 3t6q_A          129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN  208 (606)
T ss_dssp             TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence            5999999999999974444555699999999999999888888999999999  89999999887766544321      


Q ss_pred             ---------------------------------------------CCCcEEEcccCccccCCCcCccCCCCCCeeeCccC
Q 040254          178 ---------------------------------------------TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRN  212 (555)
Q Consensus       178 ---------------------------------------------~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n  212 (555)
                                                                   .+|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus       209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  288 (606)
T 3t6q_A          209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT  288 (606)
T ss_dssp             CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred             cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence                                                         16788888888888777778999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc-ccccccCCCCCcEEEcccceecccC
Q 040254          213 NLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS-FLLTLTSCRLLTALRLACNQLEGQI  291 (555)
Q Consensus       213 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~  291 (555)
                      .++ .+|..+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+. ....+..+++|++|++++|.+.+..
T Consensus       289 ~l~-~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          289 HLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             CCS-CCCSSCCSCTTCCEEECTTCCCSB-GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             ccC-CCChhhcccccCCEEECccCCcCc-CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence            998 778889999999999999999884 4446788899999999999988754 3455888999999999999887433


Q ss_pred             ChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccc-hhhhCCCCCcEEEccCC
Q 040254          292 PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVP-LWLSKLTKLEVLLLSGN  370 (555)
Q Consensus       292 ~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~n  370 (555)
                      .      ....+..+++|+.|++++|.+....+..+     ..+++|++|++++|.+.+..+ .++..+++|++|++++|
T Consensus       367 ~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          367 C------CNLQLRNLSHLQSLNLSYNEPLSLKTEAF-----KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             E------STTTTTTCTTCCEEECCSCSCEEECTTTT-----TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             C------cchhcccCCCCCEEECCCCcCCcCCHHHh-----cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            0      01235667899999999999887766655     678899999999999886554 45888999999999999


Q ss_pred             ccccccCccccCCCCCcEEEccCccCccc-c-----chhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccC
Q 040254          371 QITGSIPGWFGNLPSLFYFALSQNNISGE-F-----PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFG  444 (555)
Q Consensus       371 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~-----~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  444 (555)
                      .+.+..+..+..+++|++|++++|++++. +     ...+.+|+.|++++|.+....+. .+.              ...
T Consensus       436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~--------------~l~  500 (606)
T 3t6q_A          436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFT--------------SLK  500 (606)
T ss_dssp             CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TTT--------------TCT
T ss_pred             ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh-hhc--------------ccc
Confidence            99988888899999999999999998752 1     23456778888888876543221 000              112


Q ss_pred             CCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          445 LRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       445 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      ..+.|++++|++++..|..+..++.| +|++++|++++.+|..+..+++|++|++++|+++
T Consensus       501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence            23479999999999999999999999 9999999999999999999999999999999997

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6e-44  Score=386.16  Aligned_cols=478  Identities=20%  Similarity=0.210  Sum_probs=334.6

Q ss_pred             cCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEE
Q 040254           33 PAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD  112 (555)
Q Consensus        33 ~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~  112 (555)
                      ++++++++ .+|..+.  +++++|+|++|.+. .++...|.++++|++|++++|.+++..+..+..      +++|++|+
T Consensus        10 ~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~   79 (680)
T 1ziw_A           10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQK------LPMLKVLN   79 (680)
T ss_dssp             ECCSSCCS-SCCSCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH------CTTCCEEE
T ss_pred             ECCCCCcc-ccccccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhc------ccCcCEEE
Confidence            34445554 4666664  79999999999998 788888999999999999999999877766654      45999999


Q ss_pred             ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc
Q 040254          113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG  192 (555)
Q Consensus       113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~  192 (555)
                      +++|.++...+.+|+++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+
T Consensus        80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             CCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            99999997555679999999999999999887777889999999999999999999888889999999999999999987


Q ss_pred             CCCcCcc--CCCCCCeeeCccCcCcccCCccccCC---------------------------CCCCEEECcCccCccccC
Q 040254          193 SIPRDIG--KLTNLKYLLLYRNNLSGSLPSSMMNC---------------------------TNLKTLNLMGNLFAGNLS  243 (555)
Q Consensus       193 ~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~~---------------------------~~L~~L~l~~n~l~~~~~  243 (555)
                      ..+..+.  .+++|++|++++|.+.+..+..+..+                           ++|++|++++|.+.+..+
T Consensus       160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~  239 (680)
T 1ziw_A          160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN  239 (680)
T ss_dssp             BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT
T ss_pred             cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh
Confidence            7665543  56899999999999987766655543                           567778888887774433


Q ss_pred             cccccCCC--CCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhccc---------------------
Q 040254          244 AYNFSVLS--QLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKS---------------------  300 (555)
Q Consensus       244 ~~~~~~l~--~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~---------------------  300 (555)
                       ..+..++  +|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+..                     
T Consensus       240 -~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp  318 (680)
T 1ziw_A          240 -TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP  318 (680)
T ss_dssp             -TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred             -hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccc
Confidence             4566664  4999999999999888888999999999999999998776655543322                     


Q ss_pred             ----ccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccC----------------------------ccc
Q 040254          301 ----LILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG----------------------------CQL  348 (555)
Q Consensus       301 ----l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------------------------n~i  348 (555)
                          ..+..+++|+.+++++|.+.+..+..+     ..+++|++|++++                            |++
T Consensus       319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l  393 (680)
T 1ziw_A          319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-----TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI  393 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBCCCCTTTT-----TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred             ccChhhcccCCCCCEEECCCCccCCCChhHh-----ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence                135567889999999998887765544     4444555555544                            444


Q ss_pred             ccccchhhhCCCCCcEEEccCCccccccC-ccccCCCCCcEEEccCccCccccchh---hhccccchhhhccCCCCCC-C
Q 040254          349 TGQVPLWLSKLTKLEVLLLSGNQITGSIP-GWFGNLPSLFYFALSQNNISGEFPKE---LSRLQPLVIEQNKFNRNKP-D  423 (555)
Q Consensus       349 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~~~~~~~~~~~-~  423 (555)
                      ++..+.++..+++|++|++++|++.+.++ ..+..+++|++|++++|++.+..+..   +..++.|.+.+|.+..... .
T Consensus       394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p  473 (680)
T 1ziw_A          394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP  473 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred             CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence            44444555555555555555555554333 44555555555555555554433332   2344445555544432110 0


Q ss_pred             CCccccCCCccccccccccc----------CCCCEEEccCccccccCC--------hhccCCCCCCeeeCCCccceeecc
Q 040254          424 LPFFLFPNQNSTSHQYNRIF----------GLRPTIFLANNSLSGRIP--------AETGQLKFLNVLDLGNNNFAGSIP  485 (555)
Q Consensus       424 l~~~~~~~~~~~~~~~~~~~----------~~~~~l~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~  485 (555)
                      -.+...+.++.+++..+.+.          ...+.|++++|++++..+        ..+.++++|++|+|++|+++...+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence            11122233333333222211          223477777777765322        225677777777777777774444


Q ss_pred             hhhhCCccCCeeeCCCCCCCCCcceecCCCC--CCCCCCCCCccCCCcC
Q 040254          486 NQISQLTILERLDLSKNHLSENNLQGPIPSG--GQLHTFPPSSFEGNPE  532 (555)
Q Consensus       486 ~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~l~~~~~~gNp~  532 (555)
                      ..|..+++|++|++++|+|+      .+|..  ..+..+..+++++|..
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~------~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLN------TLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECTTSCC
T ss_pred             HHcccccCcceeECCCCCCC------cCCHhHhCCCCCCCEEECCCCcC
Confidence            56777788888888888776      34433  3456677777887743

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-46  Score=400.73  Aligned_cols=441  Identities=18%  Similarity=0.168  Sum_probs=226.2

Q ss_pred             CCCceEeccc---CcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcC------cC------cCchhH
Q 040254            7 AGGQIISCHT---EKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHV------HG------PLPINS   71 (555)
Q Consensus         7 ~~~~~~~c~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~------~~------~i~~~~   71 (555)
                      |+....+|.|   .++.|...  ...+.+++++++++|.+|++|+++++|++|+|++|.+      .+      .+|...
T Consensus        60 W~~~~~~c~w~~~~GV~C~~~--~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~  137 (636)
T 4eco_A           60 WNFNKELDMWGAQPGVSLNSN--GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ  137 (636)
T ss_dssp             CCCSSCGGGTTCCTTEEECTT--CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH
T ss_pred             CCCCCCcccccCCCCeEEcCC--CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH
Confidence            5555567888   78888654  4688999999999999999999999999999999975      22      334332


Q ss_pred             HhcCCCCCEEEccCCcCccccCCCCcccc--------------------------------------ccCCCCCccEEEc
Q 040254           72 FHFLTLLEIIDLSYNSLSGELTGLIPSLA--------------------------------------WNHSFCSMRLLDF  113 (555)
Q Consensus        72 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--------------------------------------~~~~~~~L~~L~l  113 (555)
                         +..|+ ++++.+.+.+..+..+....                                      ..+.+++|++|++
T Consensus       138 ---~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~L  213 (636)
T 4eco_A          138 ---KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYM  213 (636)
T ss_dssp             ---HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEE
T ss_pred             ---HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEEC
Confidence               22333 44444433332222221100                                      0012335555555


Q ss_pred             cCCcCCcc-----------------CCcccc--CCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeeccc-Ccc-cccc
Q 040254          114 SYNDFSSQ-----------------VPPRLG--NCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK-LSG-FISN  172 (555)
Q Consensus       114 s~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~  172 (555)
                      ++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ ..|.
T Consensus       214 s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~  293 (636)
T 4eco_A          214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD  293 (636)
T ss_dssp             ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred             cCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence            55555543                 455544  55555555555555555555555555555555555554 444 3344


Q ss_pred             cccCC------CCCcEEEcccCccccCCCc--CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCc
Q 040254          173 DIINL------TSLLVLELYSKELIGSIPR--DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSA  244 (555)
Q Consensus       173 ~~~~l------~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  244 (555)
                      .+..+      ++|++|++++|.+. .+|.  .+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+. .++ 
T Consensus       294 ~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp-  369 (636)
T 4eco_A          294 DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP-  369 (636)
T ss_dssp             HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC-
T ss_pred             HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-ccc-
Confidence            44433      55555555555554 4444  45555555555555555554444 4555555555555555554 333 


Q ss_pred             ccccCCCC-CcEEEcccccccccccccccCCC--CCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCC
Q 040254          245 YNFSVLSQ-LETIDLYINMFTGSFLLTLTSCR--LLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNE  321 (555)
Q Consensus       245 ~~~~~l~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~  321 (555)
                      ..+..+++ |++|++++|.++ ..+..+....  +|++|++++|.+.+..|..+.... .....+.+|+.|++++|.++.
T Consensus       370 ~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~-~~~~~~~~L~~L~Ls~N~l~~  447 (636)
T 4eco_A          370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD-PTPFKGINVSSINLSNNQISK  447 (636)
T ss_dssp             TTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC-SSCCCCCCEEEEECCSSCCCS
T ss_pred             HhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc-cccccCCCCCEEECcCCccCc
Confidence            22444444 555555555554 2333333322  455555555555544443332110 001123345555555555554


Q ss_pred             CCCccccccccCCCCCccEEEccCcccccccchhhhCCC-------CCcEEEccCCccccccCcccc--CCCCCcEEEcc
Q 040254          322 ATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLT-------KLEVLLLSGNQITGSIPGWFG--NLPSLFYFALS  392 (555)
Q Consensus       322 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~  392 (555)
                      .+...+     ..+++|++|++++|+++...+..+....       +|++|++++|+++ .+|..+.  .+++|++|+|+
T Consensus       448 lp~~~~-----~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls  521 (636)
T 4eco_A          448 FPKELF-----STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLS  521 (636)
T ss_dssp             CCTHHH-----HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECC
T ss_pred             CCHHHH-----ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECC
Confidence            333222     3344555555555555422222222111       4555555555555 3444443  45555555555


Q ss_pred             CccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEc------cCccccccCChhccC
Q 040254          393 QNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFL------ANNSLSGRIPAETGQ  466 (555)
Q Consensus       393 ~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L------~~n~l~~~~~~~~~~  466 (555)
                      +|++++ +|..+.+++.|.                                    .|++      ++|++.+.+|..+..
T Consensus       522 ~N~l~~-ip~~~~~l~~L~------------------------------------~L~Ls~N~~ls~N~l~~~~p~~l~~  564 (636)
T 4eco_A          522 YNSFSK-FPTQPLNSSTLK------------------------------------GFGIRNQRDAQGNRTLREWPEGITL  564 (636)
T ss_dssp             SSCCSS-CCCGGGGCSSCC------------------------------------EEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred             CCCCCC-cChhhhcCCCCC------------------------------------EEECCCCcccccCcccccChHHHhc
Confidence            555553 444444444433                                    2444      345555555555656


Q ss_pred             CCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          467 LKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       467 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      +++|++|+|++|+++ .+|..+.  ++|++|||++|+++
T Consensus       565 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          565 CPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred             CCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence            666666666666663 4454433  45666666666555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.5e-44  Score=379.49  Aligned_cols=445  Identities=17%  Similarity=0.144  Sum_probs=241.1

Q ss_pred             CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCC
Q 040254           51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCS  130 (555)
Q Consensus        51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  130 (555)
                      ++|++|++++|.++ .+++..|..+++|++|++++|++++..++.|..      +++|++|++++|.+++..+..+++++
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~   98 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYS------LGSLEHLDLSDNHLSSLSSSWFGPLS   98 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTT------CTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred             CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccc------cccCCEEECCCCccCccCHHHhccCC
Confidence            34555555555544 333334444555555555555554444333332      22455555555555443333344555


Q ss_pred             CCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeeccc-CcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeee
Q 040254          131 RLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNK-LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLL  208 (555)
Q Consensus       131 ~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  208 (555)
                      +|++|++++|.+.. ..|..+.++++|++|++++|. +..+.+..+.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  178 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT  178 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred             CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence            55555555444433 223344444555555555544 2333333444455555555555555444444444455555555


Q ss_pred             CccCcCcccCCccccCCCCCCEEECcCccCcccc--CcccccCCCCCcEEEccccccccccc----ccccCCCCCcEEEc
Q 040254          209 LYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNL--SAYNFSVLSQLETIDLYINMFTGSFL----LTLTSCRLLTALRL  282 (555)
Q Consensus       209 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l  282 (555)
                      ++.|.+.......+..+++|++|++++|.+.+..  +......++.|+.|++++|.+++..+    ..+..++.|+.+++
T Consensus       179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l  258 (549)
T 2z81_A          179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF  258 (549)
T ss_dssp             EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred             cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence            5544443211111233444555555554444210  11112233444445544444433211    12233344444444


Q ss_pred             ccceecccCC---------hhhhhccccc------------------ccCCCCCcEEEeccccCCCCCCccccccccCCC
Q 040254          283 ACNQLEGQIP---------PEIIKLKSLI------------------LMGCKNLNVLFLTMNFMNEATPNYDQNKISDGF  335 (555)
Q Consensus       283 ~~n~~~~~~~---------~~l~~l~~l~------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  335 (555)
                      ++|.+.+...         ..+..++.+.                  +....+|+.+++++|.+...+...+     ..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~-----~~l  333 (549)
T 2z81_A          259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS-----QHL  333 (549)
T ss_dssp             ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH-----HHC
T ss_pred             ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH-----hcC
Confidence            4444332100         0001111110                  1123467777777777665443322     356


Q ss_pred             CCccEEEccCcccccccc---hhhhCCCCCcEEEccCCccccccC--ccccCCCCCcEEEccCccCccccchh---hhcc
Q 040254          336 QNLRAVSLAGCQLTGQVP---LWLSKLTKLEVLLLSGNQITGSIP--GWFGNLPSLFYFALSQNNISGEFPKE---LSRL  407 (555)
Q Consensus       336 ~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l  407 (555)
                      ++|++|++++|++++..+   ..++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..   +.++
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L  412 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM  412 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC
T ss_pred             ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc
Confidence            777777777777765443   235667777777777777764322  34667777777777777776 44433   3456


Q ss_pred             ccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchh
Q 040254          408 QPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQ  487 (555)
Q Consensus       408 ~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  487 (555)
                      +.|++++|.+......++                  ...+.|++++|++++..    ..+++|++|++++|+|+ .+|. 
T Consensus       413 ~~L~Ls~N~l~~l~~~~~------------------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-  468 (549)
T 2z81_A          413 RFLNLSSTGIRVVKTCIP------------------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-  468 (549)
T ss_dssp             CEEECTTSCCSCCCTTSC------------------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-
T ss_pred             cEEECCCCCcccccchhc------------------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-
Confidence            667777776654332221                  23347999999998643    57899999999999999 6665 


Q ss_pred             hhCCccCCeeeCCCCCCCCCcceecCCC-CCCCCCCCCCccCCCcCCCCcc
Q 040254          488 ISQLTILERLDLSKNHLSENNLQGPIPS-GGQLHTFPPSSFEGNPEFCSDI  537 (555)
Q Consensus       488 l~~l~~L~~L~Ls~N~l~~~~l~~~ip~-~~~~~~l~~~~~~gNp~~c~~~  537 (555)
                      ...+++|++|+|++|+|+     +..|. -..+..+..++++||||.|+++
T Consensus       469 ~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          469 ASLFPVLLVMKISRNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGGCTTCCEEECCSSCCC-----CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cccCccCCEEecCCCccC-----CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            467899999999999987     44443 2467788999999999999986

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.4e-44  Score=382.10  Aligned_cols=449  Identities=19%  Similarity=0.121  Sum_probs=354.2

Q ss_pred             cCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEE
Q 040254           33 PAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD  112 (555)
Q Consensus        33 ~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~  112 (555)
                      +.++++++ .+|..+.  +++++|+|++|.+. .++...|.++++|++|++++|++++..+..|..      +++|++|+
T Consensus        17 ~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~------l~~L~~L~   86 (606)
T 3vq2_A           17 QCMDQKLS-KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG------LHHLSNLI   86 (606)
T ss_dssp             ECTTSCCS-SCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT------CTTCCEEE
T ss_pred             EccCCCcc-cCCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhc------hhhcCEeE
Confidence            34445554 4555554  79999999999998 677778999999999999999999887877764      45999999


Q ss_pred             ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccc-ccccccCCCCCcEEEcccCccc
Q 040254          113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF-ISNDIINLTSLLVLELYSKELI  191 (555)
Q Consensus       113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~  191 (555)
                      +++|.+++..|..|+++++|++|++++|.+....+..+.++++|++|++++|.+++. .|..+.++++|++|++++|.+.
T Consensus        87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            999999987799999999999999999998877777899999999999999999874 4888999999999999999999


Q ss_pred             cCCCcCccCCCCCC----eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCccc---------------------
Q 040254          192 GSIPRDIGKLTNLK----YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYN---------------------  246 (555)
Q Consensus       192 ~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---------------------  246 (555)
                      +..+..+..+++|+    .|++++|.+....+..+.. .+|++|++++|.+.+......                     
T Consensus       167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  245 (606)
T 3vq2_A          167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER  245 (606)
T ss_dssp             EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             ecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence            88888787776665    8999999999655555544 489999999887642111111                     


Q ss_pred             -----------------------------------ccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccC
Q 040254          247 -----------------------------------FSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQI  291 (555)
Q Consensus       247 -----------------------------------~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  291 (555)
                                                         +..+++|+.|+++++.+....  .+..+++|++|++++|.+ +.+
T Consensus       246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~l  322 (606)
T 3vq2_A          246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQF  322 (606)
T ss_dssp             CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSC
T ss_pred             cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-ccc
Confidence                                               344566777777777765433  566777777777777776 344


Q ss_pred             ChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccc--cchhhhCCCCCcEEEccC
Q 040254          292 PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQ--VPLWLSKLTKLEVLLLSG  369 (555)
Q Consensus       292 ~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~L~~  369 (555)
                      |.         + .+++|+.+++++|.......  +     ..+++|++|++++|.+++.  .+..+..+++|++|++++
T Consensus       323 p~---------~-~l~~L~~L~l~~n~~~~~~~--~-----~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~  385 (606)
T 3vq2_A          323 PT---------L-DLPFLKSLTLTMNKGSISFK--K-----VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF  385 (606)
T ss_dssp             CC---------C-CCSSCCEEEEESCSSCEECC--C-----CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred             cc---------C-CCCccceeeccCCcCccchh--h-----ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence            41         2 56788888888885443221  1     5789999999999999865  378899999999999999


Q ss_pred             CccccccCccccCCCCCcEEEccCccCccccc-h---hhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCC
Q 040254          370 NQITGSIPGWFGNLPSLFYFALSQNNISGEFP-K---ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGL  445 (555)
Q Consensus       370 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~---~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  445 (555)
                      |.+. .+|..+..+++|++|++++|++.+..+ .   .+.+|+.|++++|.+....+.. +              .....
T Consensus       386 n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~--------------~~l~~  449 (606)
T 3vq2_A          386 NGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-F--------------LGLTS  449 (606)
T ss_dssp             CSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT-T--------------TTCTT
T ss_pred             Cccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh-h--------------cCCCC
Confidence            9998 466889999999999999999987655 3   3567778888887764422110 0              01122


Q ss_pred             CCEEEccCccccc-cCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC-CCCCCCC
Q 040254          446 RPTIFLANNSLSG-RIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG-GQLHTFP  523 (555)
Q Consensus       446 ~~~l~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~~~~~l~  523 (555)
                      .+.|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++     +.+|.. ..+..+.
T Consensus       450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-----FLDSSHYNQLYSLS  524 (606)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-----CEEGGGTTTCTTCC
T ss_pred             CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC-----CcCHHHccCCCcCC
Confidence            3479999999997 47888999999999999999999999999999999999999999997     343432 3466788


Q ss_pred             CCccCCCcCC
Q 040254          524 PSSFEGNPEF  533 (555)
Q Consensus       524 ~~~~~gNp~~  533 (555)
                      .+++++|...
T Consensus       525 ~L~l~~N~l~  534 (606)
T 3vq2_A          525 TLDCSFNRIE  534 (606)
T ss_dssp             EEECTTSCCC
T ss_pred             EEECCCCcCc
Confidence            8888888654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9e-44  Score=372.50  Aligned_cols=435  Identities=19%  Similarity=0.188  Sum_probs=279.1

Q ss_pred             eccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccE
Q 040254           31 MQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL  110 (555)
Q Consensus        31 ~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~  110 (555)
                      .+++++++++ .+|..+.  ++|++|++++|.+. .+++..|.++++|++|++++|++++..|..|..      +++|++
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~   73 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKF------NQELEY   73 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT------CTTCCE
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhc------ccCCCE
Confidence            4667778887 4666665  78899999999888 677677888899999999999888766666543      458999


Q ss_pred             EEccCCcCCccCCccccCCCCCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeecccCcccccccccCCCCC--cEEEccc
Q 040254          111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSL--LVLELYS  187 (555)
Q Consensus       111 L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~L~~  187 (555)
                      |++++|+++. +|..  .+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++   ..+..+++|  ++|++++
T Consensus        74 L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           74 LDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             EECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred             EecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence            9999998884 5554  78889999999888776 467888888999999999888875   356777777  8899988


Q ss_pred             Ccc--ccCCCcCccCCC-CCCeeeCccCcCcccCC-ccccCCCCCCEEECcCcc-------CccccCcccccCCCCCcEE
Q 040254          188 KEL--IGSIPRDIGKLT-NLKYLLLYRNNLSGSLP-SSMMNCTNLKTLNLMGNL-------FAGNLSAYNFSVLSQLETI  256 (555)
Q Consensus       188 n~~--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L  256 (555)
                      |.+  .+..|..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|.       +.+.++  .+..+++|+.|
T Consensus       148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L  225 (520)
T 2z7x_B          148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNL  225 (520)
T ss_dssp             CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEE
T ss_pred             ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhc
Confidence            888  666666665544 23345555665543322 244556666666666654       332332  35556666666


Q ss_pred             Eccccccccccccccc---CCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccC--------------
Q 040254          257 DLYINMFTGSFLLTLT---SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFM--------------  319 (555)
Q Consensus       257 ~l~~n~~~~~~~~~l~---~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~--------------  319 (555)
                      +++++.+.+.....+.   ..++|++|++++|++.+.+|..+...   ....+++|+.+++++|.+              
T Consensus       226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~---~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~  302 (520)
T 2z7x_B          226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY---SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM  302 (520)
T ss_dssp             EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC---CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTC
T ss_pred             cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc---ccccCceeEeccccccceecchhhhhcccccC
Confidence            6666655432211111   13466666666666665555443110   012333444444444444              


Q ss_pred             ------------CCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCcccc--ccCccccCCCC
Q 040254          320 ------------NEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITG--SIPGWFGNLPS  385 (555)
Q Consensus       320 ------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~  385 (555)
                                  ......       ..+++|++|++++|++++..|.++..+++|++|++++|++++  .+|..+..+++
T Consensus       303 ~L~~L~l~~n~l~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~  375 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLCP-------SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS  375 (520)
T ss_dssp             CCSEEEEESSCCCCCCCC-------SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred             ceeEEEcCCCccccccch-------hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence                        332210       234445555555555554444455555555555555555543  22334445555


Q ss_pred             CcEEEccCccCccccchh-hhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhc
Q 040254          386 LFYFALSQNNISGEFPKE-LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET  464 (555)
Q Consensus       386 L~~L~L~~n~l~~~~~~~-~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~  464 (555)
                      |++|++++|++++.+|.. +..++.|                                    +.|++++|++++..|..+
T Consensus       376 L~~L~Ls~N~l~~~l~~~~~~~l~~L------------------------------------~~L~Ls~N~l~~~~~~~l  419 (520)
T 2z7x_B          376 LQQLDISQNSVSYDEKKGDCSWTKSL------------------------------------LSLNMSSNILTDTIFRCL  419 (520)
T ss_dssp             CCEEECCSSCCBCCGGGCSCCCCTTC------------------------------------CEEECCSSCCCGGGGGSC
T ss_pred             CCEEECCCCcCCcccccchhccCccC------------------------------------CEEECcCCCCCcchhhhh
Confidence            555555555554423322 2222222                                    268999999987777665


Q ss_pred             cCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC--CCCCCCCCCccCCCcCCCCccc
Q 040254          465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG--GQLHTFPPSSFEGNPEFCSDIA  538 (555)
Q Consensus       465 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~l~~~~~~gNp~~c~~~~  538 (555)
                      .  ++|++|++++|+|+ .+|..+..+++|++|++++|+|+      .+|..  ..+..+..++++|||+.|++++
T Consensus       420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~------~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK------SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC------ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            4  78999999999998 77877779999999999999987      35543  3566788888999999998753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-43  Score=389.60  Aligned_cols=465  Identities=20%  Similarity=0.212  Sum_probs=343.7

Q ss_pred             CCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccc-cCCCCccccccCCCCCccEEE
Q 040254           34 AMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-LTGLIPSLAWNHSFCSMRLLD  112 (555)
Q Consensus        34 ~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~L~~L~  112 (555)
                      .++++++.. |.   -.+++++|+|++|.++ .+++..|.++++|++|+|++|.+... .+..|.      .+++|++|+
T Consensus        11 cs~~~L~~v-P~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~------~L~~L~~L~   79 (844)
T 3j0a_A           11 YRFCNLTQV-PQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR------NLPNLRILD   79 (844)
T ss_dssp             ESCCCSSCC-CS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTS------SCTTCCEEE
T ss_pred             ccCCCCCCC-CC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhc------CCCCCCEEE
Confidence            334555543 43   4579999999999998 66667799999999999999965543 355665      455999999


Q ss_pred             ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHh--hhcCCCCCeeEeecccCccccc-ccccCCCCCcEEEcccCc
Q 040254          113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDD--IYAAASLEEPSLHFNKLSGFIS-NDIINLTSLLVLELYSKE  189 (555)
Q Consensus       113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~  189 (555)
                      +++|.+.+..|..|.++++|++|++++|.+.+..+..  +.++++|++|++++|.+++..+ ..|.++++|++|++++|.
T Consensus        80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            9999999888999999999999999999988766665  8899999999999999988755 579999999999999999


Q ss_pred             cccCCCcCccCC--CCCCeeeCccCcCcccCCccccCCCC------CCEEECcCccCccccCccc---------------
Q 040254          190 LIGSIPRDIGKL--TNLKYLLLYRNNLSGSLPSSMMNCTN------LKTLNLMGNLFAGNLSAYN---------------  246 (555)
Q Consensus       190 ~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~~~~------L~~L~l~~n~l~~~~~~~~---------------  246 (555)
                      +.+..+..+..+  ++|+.|+++.|.+.+..+..+..+++      |++|++++|.+.+..+...               
T Consensus       160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~  239 (844)
T 3j0a_A          160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA  239 (844)
T ss_dssp             CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred             CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence            998888888777  89999999999998777766666555      9999999997664433211               


Q ss_pred             --------------------ccC--CCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhccccccc
Q 040254          247 --------------------FSV--LSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILM  304 (555)
Q Consensus       247 --------------------~~~--l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~  304 (555)
                                          |.+  .++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..        +.
T Consensus       240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--------~~  311 (844)
T 3j0a_A          240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA--------FY  311 (844)
T ss_dssp             SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT--------TT
T ss_pred             cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH--------hc
Confidence                                111  256777888887777766777777788888888888777554443        34


Q ss_pred             CCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCC
Q 040254          305 GCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP  384 (555)
Q Consensus       305 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  384 (555)
                      .+++|+.|++++|.++...+..+     ..+++|+.|++++|.+....+..+..+++|++|++++|.+++.     ..++
T Consensus       312 ~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~  381 (844)
T 3j0a_A          312 GLDNLQVLNLSYNLLGELYSSNF-----YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIP  381 (844)
T ss_dssp             TCSSCCEEEEESCCCSCCCSCSC-----SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCC
T ss_pred             CCCCCCEEECCCCCCCccCHHHh-----cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCC
Confidence            45677888888887776665554     6677788888888877766666777788888888888877632     2256


Q ss_pred             CCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCccccccccccc-----------CCCCEEEccC
Q 040254          385 SLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIF-----------GLRPTIFLAN  453 (555)
Q Consensus       385 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~l~L~~  453 (555)
                      +|+.|++++|+++ .+|.....++.+++++|.+............+.++.+.+..+.+.           ...+.|++++
T Consensus       382 ~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~  460 (844)
T 3j0a_A          382 SIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE  460 (844)
T ss_dssp             SCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEES
T ss_pred             CcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCC
Confidence            7777777777776 445444555556666555544322111112233333333322221           2345789999


Q ss_pred             ccccc-----cCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccC
Q 040254          454 NSLSG-----RIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFE  528 (555)
Q Consensus       454 n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~  528 (555)
                      |.++.     ..+..|.++++|++|+|++|.+++.+|..+..+++|++|+|++|+|+      .+|.......+..++++
T Consensus       461 N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------~l~~~~~~~~L~~L~Ls  534 (844)
T 3j0a_A          461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT------VLSHNDLPANLEILDIS  534 (844)
T ss_dssp             CCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS------SCCCCCCCSCCCEEEEE
T ss_pred             CccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC------ccChhhhhccccEEECC
Confidence            98873     34456889999999999999999889989999999999999999997      34433223567777888


Q ss_pred             CCcCCC
Q 040254          529 GNPEFC  534 (555)
Q Consensus       529 gNp~~c  534 (555)
                      +|....
T Consensus       535 ~N~l~~  540 (844)
T 3j0a_A          535 RNQLLA  540 (844)
T ss_dssp             EECCCC
T ss_pred             CCcCCC
Confidence            875543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.1e-43  Score=379.67  Aligned_cols=449  Identities=16%  Similarity=0.166  Sum_probs=332.9

Q ss_pred             CcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEc-cCCcCcCcCchhH------------------------
Q 040254           17 EKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNL-SHNHVHGPLPINS------------------------   71 (555)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L-~~n~~~~~i~~~~------------------------   71 (555)
                      .++.|..  ....+.+++++++++|.+|++|+++++|++|+| ++|.+.|..+...                        
T Consensus       315 ~GV~C~~--~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l  392 (876)
T 4ecn_A          315 PGVDLDN--NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL  392 (876)
T ss_dssp             TTEEECT--TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHT
T ss_pred             CceEecC--CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhh
Confidence            7777765  356889999999999999999999999999999 8887654422110                        


Q ss_pred             ---------------H-----------hcCCCCCEEEccC--CcCccccCCCCccccccCCCCCccEEEccCCcCCc---
Q 040254           72 ---------------F-----------HFLTLLEIIDLSY--NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS---  120 (555)
Q Consensus        72 ---------------~-----------~~l~~L~~L~Ls~--n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~---  120 (555)
                                     +           .....++.+.+..  |++++ +|..+.      .+++|++|++++|.+++   
T Consensus       393 ~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~------~L~~L~~L~Ls~N~Lsg~~i  465 (876)
T 4ecn_A          393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ------RLTKLQIIYFANSPFTYDNI  465 (876)
T ss_dssp             CCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG------GCTTCCEEEEESCCCCGGGB
T ss_pred             ccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHh------cCCCCCEEECcCCcCCCCcc
Confidence                           0           0011122222222  55555 444443      45588888888888887   


Q ss_pred             --------------cCCcccc--CCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeeccc-Ccc-cccccccCC-----
Q 040254          121 --------------QVPPRLG--NCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK-LSG-FISNDIINL-----  177 (555)
Q Consensus       121 --------------~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l-----  177 (555)
                                    .+|..++  ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ ..|..+..+     
T Consensus       466 ~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~  545 (876)
T 4ecn_A          466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED  545 (876)
T ss_dssp             SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred             cccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence                          2777776  88889999988888888888888888888899998887 776 555544444     


Q ss_pred             --CCCcEEEcccCccccCCCc--CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCC-
Q 040254          178 --TSLLVLELYSKELIGSIPR--DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ-  252 (555)
Q Consensus       178 --~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~-  252 (555)
                        ++|++|++++|.+. .+|.  .+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .++ ..+..+++ 
T Consensus       546 ~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp-~~l~~l~~~  620 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIP-EDFCAFTDQ  620 (876)
T ss_dssp             TTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCC-TTSCEECTT
T ss_pred             ccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cch-HHHhhcccc
Confidence              48899999888887 7777  7888888999999988888 667 7888888899999888887 666 34677777 


Q ss_pred             CcEEEcccccccccccccccCCC--CCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCcccccc
Q 040254          253 LETIDLYINMFTGSFLLTLTSCR--LLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNK  330 (555)
Q Consensus       253 L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  330 (555)
                      |+.|++++|.++ ..+..+....  +|+.|++++|++.+.+|.....+   ....+.+|+.|++++|.+...+...+   
T Consensus       621 L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l---~~~~~~~L~~L~Ls~N~L~~lp~~~~---  693 (876)
T 4ecn_A          621 VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM---DDYKGINASTVTLSYNEIQKFPTELF---  693 (876)
T ss_dssp             CCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT---TTCCCCCEEEEECCSSCCCSCCHHHH---
T ss_pred             CCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh---ccccCCCcCEEEccCCcCCccCHHHH---
Confidence            889999888887 4555666554  48899999988876555322111   12234578899999998886554333   


Q ss_pred             ccCCCCCccEEEccCcccccccchhhhC--------CCCCcEEEccCCccccccCcccc--CCCCCcEEEccCccCcccc
Q 040254          331 ISDGFQNLRAVSLAGCQLTGQVPLWLSK--------LTKLEVLLLSGNQITGSIPGWFG--NLPSLFYFALSQNNISGEF  400 (555)
Q Consensus       331 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~  400 (555)
                        ..+++|+.|++++|+++ .+|..+..        +++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +
T Consensus       694 --~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l  768 (876)
T 4ecn_A          694 --ATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F  768 (876)
T ss_dssp             --HTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred             --ccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence              56788999999999888 45544333        238999999999998 6777776  89999999999999986 6


Q ss_pred             chhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEcc------CccccccCChhccCCCCCCeee
Q 040254          401 PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLA------NNSLSGRIPAETGQLKFLNVLD  474 (555)
Q Consensus       401 ~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~------~n~l~~~~~~~~~~l~~L~~L~  474 (555)
                      |..+..++.|.                                    .|+++      +|++.+.+|..+..+++|++|+
T Consensus       769 p~~l~~L~~L~------------------------------------~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~  812 (876)
T 4ecn_A          769 PTQPLNSSQLK------------------------------------AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ  812 (876)
T ss_dssp             CCGGGGCTTCC------------------------------------EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             chhhhcCCCCC------------------------------------EEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence            77777766665                                    36664      4888889999999999999999


Q ss_pred             CCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCC
Q 040254          475 LGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFC  534 (555)
Q Consensus       475 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c  534 (555)
                      |++|+| +.+|..+.  ++|+.|||++|+|.....+...|.    .......+.+|++.+
T Consensus       813 Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~----~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          813 IGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPY----IEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHH----HHTTCCEEECCTTSE
T ss_pred             CCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccc----ccchheeecCCCccc
Confidence            999999 48887765  699999999999973333333331    123455677777665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-42  Score=367.78  Aligned_cols=416  Identities=19%  Similarity=0.188  Sum_probs=320.6

Q ss_pred             cCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccC
Q 040254           24 HGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNH  103 (555)
Q Consensus        24 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  103 (555)
                      .....+..+++++|.+++..+..|.++++|++|+|++|.+. .+++..|.++++|++|++++|++++..+..+.      
T Consensus        49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~------  121 (570)
T 2z63_A           49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIG------  121 (570)
T ss_dssp             TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCT------
T ss_pred             hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCcccc------
Confidence            44557889999999999999999999999999999999998 78878899999999999999999976554444      


Q ss_pred             CCCCccEEEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCC----CeeEeecccCcccccccccCCC
Q 040254          104 SFCSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASL----EEPSLHFNKLSGFISNDIINLT  178 (555)
Q Consensus       104 ~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L----~~L~l~~n~i~~~~~~~~~~l~  178 (555)
                      .+++|++|++++|.+++ .+|..++++++|++|++++|.+....+..+..+++|    +++++++|.++.+.+..+... 
T Consensus       122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-  200 (570)
T 2z63_A          122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-  200 (570)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-
T ss_pred             ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-
Confidence            45699999999999986 468999999999999999999888878888888888    899999999998887777665 


Q ss_pred             CCcEEEcccCc----------------------------------------------------------cccCCCcCccC
Q 040254          179 SLLVLELYSKE----------------------------------------------------------LIGSIPRDIGK  200 (555)
Q Consensus       179 ~L~~L~L~~n~----------------------------------------------------------~~~~~~~~l~~  200 (555)
                      +|+.|++++|.                                                          +.+..+..+..
T Consensus       201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~  280 (570)
T 2z63_A          201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC  280 (570)
T ss_dssp             EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred             cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence            78888887762                                                          22334455566


Q ss_pred             CCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEE
Q 040254          201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL  280 (555)
Q Consensus       201 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  280 (555)
                      +++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .++.   ..+++|+.|++++|.+.+..+.  ..+++|++|
T Consensus       281 l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L  352 (570)
T 2z63_A          281 LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFL  352 (570)
T ss_dssp             GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred             cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEE
Confidence            677777777777766 456666666 7777777777665 4442   3566777777777766544332  566777777


Q ss_pred             EcccceecccC--ChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccc-hhhh
Q 040254          281 RLACNQLEGQI--PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVP-LWLS  357 (555)
Q Consensus       281 ~l~~n~~~~~~--~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~  357 (555)
                      ++++|.+.+..  +..        +..+++|+.+++++|.+...+.. +     ..+++|++|++++|.+.+..+ ..+.
T Consensus       353 ~l~~n~l~~~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~-~-----~~l~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          353 DLSRNGLSFKGCCSQS--------DFGTTSLKYLDLSFNGVITMSSN-F-----LGLEQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             ECCSSCCBEEEEEEHH--------HHTCSCCCEEECCSCSEEEEEEE-E-----ETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred             eCcCCccCcccccccc--------ccccCccCEEECCCCcccccccc-c-----cccCCCCEEEccCCccccccchhhhh
Confidence            77777665322  222        33456777777777776654433 2     556777777777777765444 4566


Q ss_pred             CCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc-cccchhhhccccchhhhccCCCCCCCCCccccCCCcccc
Q 040254          358 KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS-GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTS  436 (555)
Q Consensus       358 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~  436 (555)
                      .+++|++|++++|++.+..+..+..+++|++|++++|.++ +.+|..+..++.|.                         
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~-------------------------  473 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-------------------------  473 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-------------------------
T ss_pred             cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC-------------------------
Confidence            7777777777777777667777777777777777777776 45666666666555                         


Q ss_pred             cccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          437 HQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       437 ~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                                 .|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus       474 -----------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          474 -----------FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             -----------EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -----------EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence                       6999999999888999999999999999999999888888999999999999999987

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.3e-43  Score=370.96  Aligned_cols=455  Identities=16%  Similarity=0.166  Sum_probs=348.5

Q ss_pred             EecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCcc
Q 040254           12 ISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG   90 (555)
Q Consensus        12 ~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~   90 (555)
                      |.|.+... ..+......+..+++++|.+++..+..|..+++|++|++++|.+. .+++..|..+++|++|++++|++++
T Consensus        10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~   88 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSS   88 (549)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCS
T ss_pred             EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCc
Confidence            56654444 333333467899999999999999999999999999999999998 6777789999999999999999997


Q ss_pred             ccCCCCccccccCCCCCccEEEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeecccCcc
Q 040254           91 ELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHFNKLSG  168 (555)
Q Consensus        91 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~n~i~~  168 (555)
                      ..+..+.      .+++|++|++++|.+++ ..+..++++++|++|++++|...+.++ ..+.++++|++|++++|.+++
T Consensus        89 ~~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           89 LSSSWFG------PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             CCHHHHT------TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             cCHHHhc------cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            6554443      45699999999999986 356789999999999999998655555 579999999999999999999


Q ss_pred             cccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccC---CccccCCCCCCEEECcCccCccccCc-
Q 040254          169 FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSL---PSSMMNCTNLKTLNLMGNLFAGNLSA-  244 (555)
Q Consensus       169 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~~~~L~~L~l~~n~l~~~~~~-  244 (555)
                      ..+..+..+++|++|+++.|.+.......+..+++|++|++++|.+.+..   ......+++|++|++++|.+.+..+. 
T Consensus       163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  242 (549)
T 2z81_A          163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE  242 (549)
T ss_dssp             ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred             cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence            88999999999999999998875332222356899999999999987531   12234567888888888876532211 


Q ss_pred             --ccccCCCCCcEEEcccccccccc------cccccC-----------------------------CCCCcEEEccccee
Q 040254          245 --YNFSVLSQLETIDLYINMFTGSF------LLTLTS-----------------------------CRLLTALRLACNQL  287 (555)
Q Consensus       245 --~~~~~l~~L~~L~l~~n~~~~~~------~~~l~~-----------------------------~~~L~~L~l~~n~~  287 (555)
                        ..+..+++|+.+++++|.+.+..      ...+..                             .++|+.+++++|.+
T Consensus       243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l  322 (549)
T 2z81_A          243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV  322 (549)
T ss_dssp             HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred             HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence              12344566666666666554321      011122                             34566666666665


Q ss_pred             cccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccc--hhhhCCCCCcEE
Q 040254          288 EGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVP--LWLSKLTKLEVL  365 (555)
Q Consensus       288 ~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L  365 (555)
                      . .+|..+       +..+++|+.|++++|.+.+..+..  ......+++|++|++++|++++..+  ..+..+++|++|
T Consensus       323 ~-~ip~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L  392 (549)
T 2z81_A          323 F-LVPCSF-------SQHLKSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL  392 (549)
T ss_dssp             C-CCCHHH-------HHHCTTCCEEECCSSCCCHHHHHH--HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred             c-cCCHHH-------HhcCccccEEEccCCccccccccc--hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence            4 444433       134678999999999987643211  0112678999999999999985432  568899999999


Q ss_pred             EccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCC
Q 040254          366 LLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGL  445 (555)
Q Consensus       366 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  445 (555)
                      ++++|+++ .+|..+..+++|++|++++|++++.....+.+++.|++++|.+......+                   ..
T Consensus       393 ~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l-------------------~~  452 (549)
T 2z81_A          393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL-------------------PR  452 (549)
T ss_dssp             ECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCC-------------------TT
T ss_pred             ECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccC-------------------Ch
Confidence            99999999 67888889999999999999998443333468999999999876543211                   22


Q ss_pred             CCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          446 RPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       446 ~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      .+.|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|++|++++|+++
T Consensus       453 L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  510 (549)
T 2z81_A          453 LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  510 (549)
T ss_dssp             CCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred             hcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence            347999999999 5665 467899999999999999988888999999999999999987

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.5e-41  Score=360.46  Aligned_cols=467  Identities=19%  Similarity=0.183  Sum_probs=309.5

Q ss_pred             eEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCc
Q 040254           11 IISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS   89 (555)
Q Consensus        11 ~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~   89 (555)
                      .+.|..... .++-..+.++..+++++|.|++..+.+|.++++||+|+|++|.++ .+++.+|.++++|++|+|++|+++
T Consensus        35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC
Confidence            345665554 455555778999999999999999999999999999999999998 799889999999999999999999


Q ss_pred             cccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeecccCcc
Q 040254           90 GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNKLSG  168 (555)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~  168 (555)
                      +..++.|.      .+++|++|++++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|++++
T Consensus       114 ~l~~~~f~------~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          114 SLALGAFS------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             EECGGGGT------TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCCHHHhc------CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            77666665      45599999999999998667789999999999999998765 467888999999999999999998


Q ss_pred             cccccccCCCCC----cEEEcccCccccCCCcCccCCCCCCeeeCccCcCc-----------------------------
Q 040254          169 FISNDIINLTSL----LVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS-----------------------------  215 (555)
Q Consensus       169 ~~~~~~~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-----------------------------  215 (555)
                      +.+..+..+.++    ..++++.|.+....+..+.. ..++.+++..|...                             
T Consensus       188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~  266 (635)
T 4g8a_A          188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN  266 (635)
T ss_dssp             ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             cccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence            877777665544    35777777765443333221 22333333332111                             


Q ss_pred             -----------------------------ccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254          216 -----------------------------GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS  266 (555)
Q Consensus       216 -----------------------------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  266 (555)
                                                   ......+....+++.+.+.++.+. .+.  .+.....++.|++.++.+...
T Consensus       267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~  343 (635)
T 4g8a_A          267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVK--DFSYNFGWQHLELVNCKFGQF  343 (635)
T ss_dssp             CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECG--GGGSCCCCSEEEEESCEESSC
T ss_pred             cccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-ccc--ccccchhhhhhhcccccccCc
Confidence                                         001112233345556666555543 222  345556777777777765543


Q ss_pred             ccccccCCCCCcEEEcccceecccCChh-hhh---------------cccccccCCCCCcEEEeccccCCCCCCcccccc
Q 040254          267 FLLTLTSCRLLTALRLACNQLEGQIPPE-IIK---------------LKSLILMGCKNLNVLFLTMNFMNEATPNYDQNK  330 (555)
Q Consensus       267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~---------------l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  330 (555)
                      ..   ..++.|+.+.+..+......... +..               .....+..+.+++.+++..+.........    
T Consensus       344 ~~---~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~----  416 (635)
T 4g8a_A          344 PT---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNF----  416 (635)
T ss_dssp             CC---CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCC----
T ss_pred             Cc---ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccc----
Confidence            22   12344455555444433111000 000               00000112234444444444433322111    


Q ss_pred             ccCCCCCccEEEccCccccccc-chhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc-cccchhhhccc
Q 040254          331 ISDGFQNLRAVSLAGCQLTGQV-PLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS-GEFPKELSRLQ  408 (555)
Q Consensus       331 ~~~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  408 (555)
                        ..+++|+.+++..+...... ...+..+++++.++++.|.+....+..+..+++|++|++++|.+. +..|..+..++
T Consensus       417 --~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          417 --LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             --TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             --cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence              33455555555555443222 234455555666666666665555555555566666666665532 23444444444


Q ss_pred             cchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhh
Q 040254          409 PLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQI  488 (555)
Q Consensus       409 ~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  488 (555)
                      .|.                                    .|++++|++++..|..|.++++|++|+|++|+|++..|..|
T Consensus       495 ~L~------------------------------------~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  538 (635)
T 4g8a_A          495 NLT------------------------------------FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  538 (635)
T ss_dssp             TCC------------------------------------EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG
T ss_pred             ccC------------------------------------EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH
Confidence            444                                    69999999999999999999999999999999998899999


Q ss_pred             hCCccCCeeeCCCCCCCCCcceecCCCC-CCC-CCCCCCccCCCcCCCCccc
Q 040254          489 SQLTILERLDLSKNHLSENNLQGPIPSG-GQL-HTFPPSSFEGNPEFCSDIA  538 (555)
Q Consensus       489 ~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~~~-~~l~~~~~~gNp~~c~~~~  538 (555)
                      ..+++|++|||++|+|+     +..|.. ..+ .++..++++||||.|++.+
T Consensus       539 ~~l~~L~~L~Ls~N~l~-----~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          539 KCLNSLQVLDYSLNHIM-----TSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             TTCTTCCEEECTTSCCC-----BCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             hCCCCCCEEECCCCcCC-----CCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            99999999999999997     444543 123 5688899999999999754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.7e-42  Score=372.12  Aligned_cols=424  Identities=16%  Similarity=0.162  Sum_probs=341.2

Q ss_pred             CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEc-cCCcCccccCCCCccc------------------------------
Q 040254           51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDL-SYNSLSGELTGLIPSL------------------------------   99 (555)
Q Consensus        51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~~------------------------------   99 (555)
                      .+++.|+|+++.+.|.+|+ .+.++++|++|+| ++|.+++..+......                              
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            5899999999999999996 5777999999999 8887765522110000                              


Q ss_pred             ---------------cccCCCCCccEEEccC--CcCCccCCccccCCCCCcEEEccCCCCCC-----------------C
Q 040254          100 ---------------AWNHSFCSMRLLDFSY--NDFSSQVPPRLGNCSRLKSFQAGYSNLLR-----------------S  145 (555)
Q Consensus       100 ---------------~~~~~~~~L~~L~ls~--n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-----------------~  145 (555)
                                     ........++.+.+..  |.+++ +|..++++++|++|+|++|.+.+                 .
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                           0000112233344433  77776 89999999999999999999887                 3


Q ss_pred             CcHhhh--cCCCCCeeEeecccCcccccccccCCCCCcEEEcccCc-ccc-CCCcCcc-------CCCCCCeeeCccCcC
Q 040254          146 LPDDIY--AAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKE-LIG-SIPRDIG-------KLTNLKYLLLYRNNL  214 (555)
Q Consensus       146 ~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~-------~l~~L~~L~L~~n~l  214 (555)
                      +|..+.  ++++|++|++++|.+.+..|..+.++++|++|++++|. +.+ .+|..+.       .+++|++|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            888877  99999999999999998899999999999999999998 776 6776554       445999999999999


Q ss_pred             cccCCc--cccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCC-CcEEEcccceecccC
Q 040254          215 SGSLPS--SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRL-LTALRLACNQLEGQI  291 (555)
Q Consensus       215 ~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~  291 (555)
                      . .+|.  .+..+++|++|++++|.+. .++  .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|++. .+
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            9 7888  8999999999999999998 777  7899999999999999998 66777888998 999999999988 66


Q ss_pred             ChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCc
Q 040254          292 PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQ  371 (555)
Q Consensus       292 ~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~  371 (555)
                      |..+...      ..++|+.|++++|.+.+..+......-....++|+.|++++|.++...+..+..+++|+.|++++|+
T Consensus       635 p~~~~~~------~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          635 PNIFNAK------SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             CSCCCTT------CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             chhhhcc------ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            6543322      2345999999999998765433211111234589999999999994444445689999999999999


Q ss_pred             cccccCcc-ccC-------CCCCcEEEccCccCccccchhhh--ccccchhhhccCCCCCCCCCccccCCCccccccccc
Q 040254          372 ITGSIPGW-FGN-------LPSLFYFALSQNNISGEFPKELS--RLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR  441 (555)
Q Consensus       372 l~~~~~~~-~~~-------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  441 (555)
                      +. .+|.. +..       +++|++|+|++|+++ .+|..+.  .++.|.                              
T Consensus       709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~------------------------------  756 (876)
T 4ecn_A          709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLS------------------------------  756 (876)
T ss_dssp             CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCC------------------------------
T ss_pred             CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcC------------------------------
Confidence            99 44443 332       239999999999999 7777765  676666                              


Q ss_pred             ccCCCCEEEccCccccccCChhccCCCCCCeeeCCC------ccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCC
Q 040254          442 IFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGN------NNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPS  515 (555)
Q Consensus       442 ~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~  515 (555)
                            .|++++|++++ +|..+..+++|++|+|++      |++.+.+|..+..+++|+.|+|++|+|.      .+|.
T Consensus       757 ------~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~------~Ip~  823 (876)
T 4ecn_A          757 ------NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR------KVDE  823 (876)
T ss_dssp             ------EEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC------BCCS
T ss_pred             ------EEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC------ccCH
Confidence                  59999999996 788999999999999977      8888899999999999999999999984      6676


Q ss_pred             CCCCCCCCCCccCCCcCCC
Q 040254          516 GGQLHTFPPSSFEGNPEFC  534 (555)
Q Consensus       516 ~~~~~~l~~~~~~gNp~~c  534 (555)
                      . ....+..+++++||+..
T Consensus       824 ~-l~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          824 K-LTPQLYILDIADNPNIS  841 (876)
T ss_dssp             C-CCSSSCEEECCSCTTCE
T ss_pred             h-hcCCCCEEECCCCCCCc
Confidence            5 33678999999999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.9e-41  Score=357.78  Aligned_cols=438  Identities=19%  Similarity=0.188  Sum_probs=302.3

Q ss_pred             eeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCcc
Q 040254           30 LMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMR  109 (555)
Q Consensus        30 ~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~  109 (555)
                      ..++++++++++ +|..+.  ++|++|++++|.+. .++...|.++++|++|++++|++++..++.|..      +++|+
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~  103 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF------NQDLE  103 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT------CTTCC
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCC------CCCCC
Confidence            567788889886 676664  79999999999998 788778999999999999999999888877764      44999


Q ss_pred             EEEccCCcCCccCCccccCCCCCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeecccCcccccccccCCCCC--cEEEcc
Q 040254          110 LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSL--LVLELY  186 (555)
Q Consensus       110 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~L~  186 (555)
                      +|++++|.++. +|..  .+++|++|++++|.+.+ ..|..|.++++|++|++++|.++..   .+..+++|  ++|+++
T Consensus       104 ~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          104 YLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD  177 (562)
T ss_dssp             EEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred             EEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence            99999999995 6655  89999999999998876 3568899999999999999998763   45556666  999999


Q ss_pred             cCcc--ccCCCcCccCCC--CCCeeeCccCcCcccCCc-cccCCCCCCEEECcCccC-----ccccCcccccCCCCCcEE
Q 040254          187 SKEL--IGSIPRDIGKLT--NLKYLLLYRNNLSGSLPS-SMMNCTNLKTLNLMGNLF-----AGNLSAYNFSVLSQLETI  256 (555)
Q Consensus       187 ~n~~--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L  256 (555)
                      +|.+  .+..|..+..+.  .+ .++++.|.+.+..+. .+..+++|+.+++++|..     .+.+  ..+..++.++.+
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L  254 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNV  254 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEE
T ss_pred             cccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcceEE
Confidence            9998  777777776544  23 456777776644332 355677888888887742     1111  235566777777


Q ss_pred             Ecccccccccccc---cccCCCCCcEEEcccceecccCChhh-----hhccccccc------------------CCCCCc
Q 040254          257 DLYINMFTGSFLL---TLTSCRLLTALRLACNQLEGQIPPEI-----IKLKSLILM------------------GCKNLN  310 (555)
Q Consensus       257 ~l~~n~~~~~~~~---~l~~~~~L~~L~l~~n~~~~~~~~~l-----~~l~~l~~~------------------~~~~L~  310 (555)
                      ++.++.+.+....   .....++|++|++++|.+.+.+|..+     ..++.+.+.                  ...+|+
T Consensus       255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred             EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence            7766655432111   11123477777777777776666554     222211110                  012455


Q ss_pred             EEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccc--cCccccCCCCCcE
Q 040254          311 VLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGS--IPGWFGNLPSLFY  388 (555)
Q Consensus       311 ~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~  388 (555)
                      .+++++|.+......       ..+++|++|++++|.+++..|.++..+++|++|++++|++++.  .|..+..+++|++
T Consensus       335 ~L~l~~n~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          335 MLSISDTPFIHMVCP-------PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             EEEEESSCCCCCCCC-------SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred             EEEccCCCcccccCc-------cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence            555555555432210       3445666666666666655556666666666666666666542  2344556666666


Q ss_pred             EEccCccCccccch-hhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCC
Q 040254          389 FALSQNNISGEFPK-ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQL  467 (555)
Q Consensus       389 L~L~~n~l~~~~~~-~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l  467 (555)
                      |++++|++++.+|. .+..++.|.                                    .|++++|++++..|..+.  
T Consensus       408 L~l~~N~l~~~~~~~~~~~l~~L~------------------------------------~L~l~~n~l~~~~~~~l~--  449 (562)
T 3a79_B          408 LDVSLNSLNSHAYDRTCAWAESIL------------------------------------VLNLSSNMLTGSVFRCLP--  449 (562)
T ss_dssp             EECTTSCCBSCCSSCCCCCCTTCC------------------------------------EEECCSSCCCGGGGSSCC--
T ss_pred             EECCCCcCCCccChhhhcCcccCC------------------------------------EEECCCCCCCcchhhhhc--
Confidence            66666666543332 233333333                                    689999998876665543  


Q ss_pred             CCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC--CCCCCCCCCccCCCcCCCCccc
Q 040254          468 KFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG--GQLHTFPPSSFEGNPEFCSDIA  538 (555)
Q Consensus       468 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~l~~~~~~gNp~~c~~~~  538 (555)
                      ++|++|++++|+|+ .+|..+..+++|++|++++|+|+      .+|..  ..+..+..++++||||.|++++
T Consensus       450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~------~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK------SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC------CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC------CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            68999999999998 67777778999999999999987      45543  4567788888999999998653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.7e-43  Score=372.82  Aligned_cols=366  Identities=18%  Similarity=0.202  Sum_probs=309.3

Q ss_pred             CCcCcCcCchhHHhcCCCCCEEEccCCcCccc-----------------cCCCCccccccCCCCCccEEEccCCcCCccC
Q 040254           60 HNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-----------------LTGLIPSLAWNHSFCSMRLLDFSYNDFSSQV  122 (555)
Q Consensus        60 ~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~-----------------~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  122 (555)
                      +|.+++ +|. .|.++++|++|+|++|++++.                 .|..+.    ...+++|++|++++|.+.+.+
T Consensus       192 ~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~----~~~l~~L~~L~L~~n~l~~~~  265 (636)
T 4eco_A          192 SNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK----WDNLKDLTDVEVYNCPNLTKL  265 (636)
T ss_dssp             SCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC----GGGCTTCCEEEEECCTTCSSC
T ss_pred             cCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh----hcccCCCCEEEecCCcCCccC
Confidence            567886 886 478899999999999999984                 555554    013559999999999999999


Q ss_pred             CccccCCCCCcEEEccCCC-CCC-CCcHhhhcC------CCCCeeEeecccCcccccc--cccCCCCCcEEEcccCcccc
Q 040254          123 PPRLGNCSRLKSFQAGYSN-LLR-SLPDDIYAA------ASLEEPSLHFNKLSGFISN--DIINLTSLLVLELYSKELIG  192 (555)
Q Consensus       123 ~~~~~~l~~L~~L~L~~~~-~~~-~~~~~~~~l------~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~  192 (555)
                      |..++++++|++|++++|. +.+ .+|..+.++      ++|++|++++|.++. .|.  .+..+++|++|++++|.+.+
T Consensus       266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g  344 (636)
T 4eco_A          266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEG  344 (636)
T ss_dssp             CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred             hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCcc
Confidence            9999999999999999998 777 789888886      999999999999994 566  89999999999999999998


Q ss_pred             CCCcCccCCCCCCeeeCccCcCcccCCccccCCCC-CCEEECcCccCccccCcccccCC--CCCcEEEcccccccccccc
Q 040254          193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTN-LKTLNLMGNLFAGNLSAYNFSVL--SQLETIDLYINMFTGSFLL  269 (555)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~  269 (555)
                      .+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .++. .+...  ++|+.|++++|.+.+..+.
T Consensus       345 ~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~  420 (636)
T 4eco_A          345 KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAIDFSYNEIGSVDGK  420 (636)
T ss_dssp             ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred             chh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEECcCCcCCCcchh
Confidence            888 8999999999999999999 78888999999 999999999998 6763 45554  4899999999999988887


Q ss_pred             ccc-------CCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccc--cCCCCCccE
Q 040254          270 TLT-------SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKI--SDGFQNLRA  340 (555)
Q Consensus       270 ~l~-------~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~~~~~L~~  340 (555)
                      .+.       .+++|++|++++|++. .+|..+       +..+++|+.|++++|.++..+...+....  ...+++|+.
T Consensus       421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-------~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~  492 (636)
T 4eco_A          421 NFDPLDPTPFKGINVSSINLSNNQIS-KFPKEL-------FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS  492 (636)
T ss_dssp             SSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH-------HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCE
T ss_pred             hhcccccccccCCCCCEEECcCCccC-cCCHHH-------HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccE
Confidence            777       7789999999999998 455442       23457899999999999966654431100  112338999


Q ss_pred             EEccCcccccccchhhh--CCCCCcEEEccCCccccccCccccCCCCCcEEEc------cCccCccccchhhhccccchh
Q 040254          341 VSLAGCQLTGQVPLWLS--KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFAL------SQNNISGEFPKELSRLQPLVI  412 (555)
Q Consensus       341 L~l~~n~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~  412 (555)
                      |++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..+++|++|+|      ++|++.+.+|..+.+++.|. 
T Consensus       493 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~-  569 (636)
T 4eco_A          493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT-  569 (636)
T ss_dssp             EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC-
T ss_pred             EECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC-
Confidence            999999999 6777776  99999999999999996 8888999999999999      56778888998888888887 


Q ss_pred             hhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecc
Q 040254          413 EQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIP  485 (555)
Q Consensus       413 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  485 (555)
                                                         .|++++|++ +.+|..+.  ++|++|++++|+++....
T Consensus       570 -----------------------------------~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          570 -----------------------------------QLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             -----------------------------------EEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             -----------------------------------EEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence                                               599999999 47887765  899999999999985543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.1e-41  Score=352.29  Aligned_cols=435  Identities=17%  Similarity=0.191  Sum_probs=333.0

Q ss_pred             ceEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcC
Q 040254           10 QIISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSL   88 (555)
Q Consensus        10 ~~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i   88 (555)
                      ..+.|..... ..+......+..+++++|.|++..+..|..+++|++|++++|.+. .+++..|..+++|++|++++|++
T Consensus         3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCC
T ss_pred             ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCce
Confidence            4455655544 333333367889999999999999899999999999999999998 67667899999999999999999


Q ss_pred             ccccCCCCccccccCCCCCccEEEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCC--CeeEeeccc
Q 040254           89 SGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASL--EEPSLHFNK  165 (555)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L--~~L~l~~n~  165 (555)
                      +.....         .+++|++|++++|.+++ .+|..++++++|++|++++|.+..   ..+..+++|  ++|++++|.
T Consensus        82 ~~lp~~---------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           82 VKISCH---------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CEEECC---------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred             eecCcc---------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence            854332         35599999999999987 467899999999999999988765   457778888  999999999


Q ss_pred             C--cccccccccCCC-CCcEEEcccCccccCCCc-CccCCCCCCeeeCccCc-------CcccCCccccCCCCCCEEECc
Q 040254          166 L--SGFISNDIINLT-SLLVLELYSKELIGSIPR-DIGKLTNLKYLLLYRNN-------LSGSLPSSMMNCTNLKTLNLM  234 (555)
Q Consensus       166 i--~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~~~~L~~L~l~  234 (555)
                      +  .+..+..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|.       +.+.++ .+..+++|++|+++
T Consensus       150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~  228 (520)
T 2z7x_B          150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLN  228 (520)
T ss_dssp             TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEE
T ss_pred             ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccc
Confidence            9  666676666655 233566777776655443 45678888888888876       443343 56677778888877


Q ss_pred             CccCccccCcccc--cCCCCCcEEEcccccccccccccc-----cCCCCCcEEEcccceecccCC-hhhhh------ccc
Q 040254          235 GNLFAGNLSAYNF--SVLSQLETIDLYINMFTGSFLLTL-----TSCRLLTALRLACNQLEGQIP-PEIIK------LKS  300 (555)
Q Consensus       235 ~n~l~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~-~~l~~------l~~  300 (555)
                      +|.+.+.......  ...++|++|++++|.+.+..+..+     ..++.|+.+++++|.+  .+| ..+..      ++.
T Consensus       229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~  306 (520)
T 2z7x_B          229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKN  306 (520)
T ss_dssp             EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSE
T ss_pred             ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeE
Confidence            7766532111111  113477777777777776666555     6667777777777766  333 22221      121


Q ss_pred             cc-----------ccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccccc--ccchhhhCCCCCcEEEc
Q 040254          301 LI-----------LMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTG--QVPLWLSKLTKLEVLLL  367 (555)
Q Consensus       301 l~-----------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L  367 (555)
                      +.           ...+++|+.|++++|.+++..+..+     ..+++|++|++++|++++  .+|..+..+++|++|++
T Consensus       307 L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC-----GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTC-----CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             EEcCCCccccccchhhCCcccEEEeECCccChhhhhhh-----ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            11           1577899999999999998666555     778999999999999986  45678999999999999


Q ss_pred             cCCccccccCc-cccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCC
Q 040254          368 SGNQITGSIPG-WFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLR  446 (555)
Q Consensus       368 ~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  446 (555)
                      ++|++.+.+|. .+..+++|++|++++|++++..|..+.  +.|.                                   
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~-----------------------------------  424 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK-----------------------------------  424 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC-----------------------------------
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC-----------------------------------
Confidence            99999974554 588899999999999999877665543  2333                                   


Q ss_pred             CEEEccCccccccCChhccCCCCCCeeeCCCccceeecch-hhhCCccCCeeeCCCCCCC
Q 040254          447 PTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPN-QISQLTILERLDLSKNHLS  505 (555)
Q Consensus       447 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~  505 (555)
                       .|++++|+++ .+|..+..+++|++|++++|++++ +|. .+..+++|++|++++|+++
T Consensus       425 -~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          425 -VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             -EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -EEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence             5999999999 788888899999999999999994 555 4899999999999999997

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.3e-39  Score=333.36  Aligned_cols=370  Identities=19%  Similarity=0.153  Sum_probs=267.6

Q ss_pred             CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccc-cCCCCccccccCCCCCccEEEccCCcCCccCCccccCC
Q 040254           51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-LTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNC  129 (555)
Q Consensus        51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  129 (555)
                      ++|++|+|++|.+. .+++..|.++++|++|++++|.+.+. .+..|.      .+++|++|++++|.+++..|..++++
T Consensus        30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~l  102 (455)
T 3v47_A           30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR------GLSSLIILKLDYNQFLQLETGAFNGL  102 (455)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTT------TCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred             CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECccccc------ccccCCEEeCCCCccCccChhhccCc
Confidence            68899999999988 56566788899999999999888643 344454      34588899998888887778888888


Q ss_pred             CCCcEEEccCCCCCCCCcHh--hhcCCCCCeeEeecccCccccccc-ccCCCCCcEEEcccCccccCCCcCccCC--CCC
Q 040254          130 SRLKSFQAGYSNLLRSLPDD--IYAAASLEEPSLHFNKLSGFISND-IINLTSLLVLELYSKELIGSIPRDIGKL--TNL  204 (555)
Q Consensus       130 ~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L  204 (555)
                      ++|++|++++|.+.+..+..  +.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+..+..+  .+|
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L  182 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF  182 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence            88888888888877655544  777888888888888888776654 7788888888888888877766666544  577


Q ss_pred             CeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccC---CCCCcEEE
Q 040254          205 KYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTS---CRLLTALR  281 (555)
Q Consensus       205 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~---~~~L~~L~  281 (555)
                      +.|++++|.+.+..+..+..                .. ...+..+++|+.|++++|.+.+..+..+..   ..+|+.++
T Consensus       183 ~~L~l~~n~l~~~~~~~~~~----------------~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  245 (455)
T 3v47_A          183 TLLRLSSITLQDMNEYWLGW----------------EK-CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI  245 (455)
T ss_dssp             EEEECTTCBCTTCSTTCTTH----------------HH-HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred             cccccccCcccccchhhccc----------------cc-cccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence            77777777776433222110                00 001122344555555555554433333322   25555666


Q ss_pred             cccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCC
Q 040254          282 LACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTK  361 (555)
Q Consensus       282 l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~  361 (555)
                      +++|...+....                      .+.+.......+   ..-..++|+.|++++|++.+..+.++..+++
T Consensus       246 l~~~~~~~~~~~----------------------~~~~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  300 (455)
T 3v47_A          246 LSNSYNMGSSFG----------------------HTNFKDPDNFTF---KGLEASGVKTCDLSKSKIFALLKSVFSHFTD  300 (455)
T ss_dssp             CTTCTTTSCCTT----------------------CCSSCCCCTTTT---GGGTTSCCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             eccccccccccc----------------------hhhhccCccccc---ccccccCceEEEecCccccccchhhcccCCC
Confidence            655543321100                      000000000000   0012467899999999998888889999999


Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCccccccccc
Q 040254          362 LEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR  441 (555)
Q Consensus       362 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  441 (555)
                      |++|++++|++.+..+..|..+++|++|++++|.+++..+..+.+++.|.                              
T Consensus       301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------------------------------  350 (455)
T 3v47_A          301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE------------------------------  350 (455)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC------------------------------
T ss_pred             CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC------------------------------
Confidence            99999999999988888899999999999999999877788888887776                              


Q ss_pred             ccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          442 IFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       442 ~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                            .|++++|++++..|..+..+++|++|++++|+|++..+..+..+++|++|++++|+++
T Consensus       351 ------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          351 ------VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             ------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ------EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence                  5999999999888999999999999999999999777777889999999999999987

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.2e-38  Score=324.79  Aligned_cols=390  Identities=18%  Similarity=0.187  Sum_probs=264.7

Q ss_pred             CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc-cCCccccCCCCC
Q 040254           54 SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-QVPPRLGNCSRL  132 (555)
Q Consensus        54 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L  132 (555)
                      +.++.+++.+. .+|.  +  .++|++|+|++|.+++..+..+..      +++|++|++++|.+.+ ..+..|.++++|
T Consensus        13 ~~~~c~~~~l~-~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~------l~~L~~L~L~~n~~~~~i~~~~~~~l~~L   81 (455)
T 3v47_A           13 YNAICINRGLH-QVPE--L--PAHVNYVDLSLNSIAELNETSFSR------LQDLQFLKVEQQTPGLVIRNNTFRGLSSL   81 (455)
T ss_dssp             TEEECCSSCCS-SCCC--C--CTTCCEEECCSSCCCEECTTTTSS------CTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred             cccCcCCCCcc-cCCC--C--CCccCEEEecCCccCcCChhHhcc------CccccEEECcCCcccceECcccccccccC
Confidence            45666666666 5664  1  256777777777776655555543      3367777777766653 234556666666


Q ss_pred             cEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccc--cccCCCCCcEEEcccCccccCCCcC-ccCCCCCCeeeC
Q 040254          133 KSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISN--DIINLTSLLVLELYSKELIGSIPRD-IGKLTNLKYLLL  209 (555)
Q Consensus       133 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~L  209 (555)
                      ++|++++|.+....|..+.++++|++|++++|.+++..+.  .+..+++|++|++++|.+.+..|.. +..+++|++|++
T Consensus        82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A           82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence            6666666666655566666666666666666666553222  2566666666666666665554543 555666666666


Q ss_pred             ccCcCcccCCccccCC--CCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEccccee
Q 040254          210 YRNNLSGSLPSSMMNC--TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQL  287 (555)
Q Consensus       210 ~~n~l~~~~~~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~  287 (555)
                      ++|.+.+..+..+..+  .+|+.|++++|.+.+ ++...+.                ......+..+++|++|++++|++
T Consensus       162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l  224 (455)
T 3v47_A          162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGF  224 (455)
T ss_dssp             TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCC
T ss_pred             CCCcccccChhhhhccccccccccccccCcccc-cchhhcc----------------ccccccccccceeeeEecCCCcc
Confidence            6666654444444333  344444444444331 1100000                00112234568899999999999


Q ss_pred             cccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhh--CCCCCcEE
Q 040254          288 EGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS--KLTKLEVL  365 (555)
Q Consensus       288 ~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L  365 (555)
                      .+..+..+....     ...+|+.+++++|........                   .+.+....+..+.  ..++|++|
T Consensus       225 ~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~L~~L  280 (455)
T 3v47_A          225 KESMAKRFFDAI-----AGTKIQSLILSNSYNMGSSFG-------------------HTNFKDPDNFTFKGLEASGVKTC  280 (455)
T ss_dssp             CHHHHHHHHHHT-----TTCCEEEEECTTCTTTSCCTT-------------------CCSSCCCCTTTTGGGTTSCCCEE
T ss_pred             cccchhhhhccc-----cccceeeEeeccccccccccc-------------------hhhhccCcccccccccccCceEE
Confidence            877776665432     235778888887765443211                   1111111122222  34689999


Q ss_pred             EccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCC
Q 040254          366 LLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGL  445 (555)
Q Consensus       366 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  445 (555)
                      ++++|++.+..+..+..+++|++|++++|++++..+..+..++.|.                                  
T Consensus       281 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----------------------------------  326 (455)
T 3v47_A          281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL----------------------------------  326 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC----------------------------------
T ss_pred             EecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC----------------------------------
Confidence            9999999988899999999999999999999988888888888776                                  


Q ss_pred             CCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC--CCCCCCC
Q 040254          446 RPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG--GQLHTFP  523 (555)
Q Consensus       446 ~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~l~  523 (555)
                        .|++++|.+++..+..+..+++|++|+|++|++++..|..+..+++|++|++++|+|+      .+|..  ..+..+.
T Consensus       327 --~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~  398 (455)
T 3v47_A          327 --KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK------SVPDGIFDRLTSLQ  398 (455)
T ss_dssp             --EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS------CCCTTTTTTCTTCC
T ss_pred             --EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc------cCCHhHhccCCccc
Confidence              5999999999888999999999999999999999888999999999999999999997      34432  4677889


Q ss_pred             CCccCCCcCCCCcc
Q 040254          524 PSSFEGNPEFCSDI  537 (555)
Q Consensus       524 ~~~~~gNp~~c~~~  537 (555)
                      .+++++||+.|+++
T Consensus       399 ~L~l~~N~l~~~~~  412 (455)
T 3v47_A          399 KIWLHTNPWDCSCP  412 (455)
T ss_dssp             EEECCSSCBCCCTT
T ss_pred             EEEccCCCcccCCC
Confidence            99999999999987

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.5e-38  Score=332.80  Aligned_cols=412  Identities=21%  Similarity=0.228  Sum_probs=301.7

Q ss_pred             ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254           26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF  105 (555)
Q Consensus        26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  105 (555)
                      +..+..+++++|.|++..+.+|..+++|++|++++|.++ .+++..|..+++|++|++++|+++.....         .+
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---------~l  120 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC---------PM  120 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCCEECSC---------CC
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCCccCcc---------cc
Confidence            457889999999999999999999999999999999998 67777899999999999999999854322         35


Q ss_pred             CCccEEEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCC--CeeEeecccC--cccccccccCCCC-
Q 040254          106 CSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASL--EEPSLHFNKL--SGFISNDIINLTS-  179 (555)
Q Consensus       106 ~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L--~~L~l~~n~i--~~~~~~~~~~l~~-  179 (555)
                      ++|++|++++|.+++ ..|..|+++++|++|++++|.+...   .+..+++|  ++|++++|.+  ++..+..+..+.. 
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~  197 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT  197 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred             ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence            599999999999997 3468899999999999999887653   45555666  9999999999  7777777776541 


Q ss_pred             CcEEEcccCccccCCCc-CccCCCCCCeeeCccCcCc----ccCCccccCCCCCCEEECcCccCccccCcc--cccCCCC
Q 040254          180 LLVLELYSKELIGSIPR-DIGKLTNLKYLLLYRNNLS----GSLPSSMMNCTNLKTLNLMGNLFAGNLSAY--NFSVLSQ  252 (555)
Q Consensus       180 L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~l~~  252 (555)
                      .-.+++++|.+.+.++. .+..+++|+.+++++|...    ......+..+++|+.+++.++.+.+.....  ......+
T Consensus       198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~  277 (562)
T 3a79_B          198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP  277 (562)
T ss_dssp             EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred             eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence            12456667776654443 3456677777777776411    011123444455555555544333110000  0111235


Q ss_pred             CcEEEcccccccccccccc-----cCC--------------------------CCCcEEEcccceecccCChhhhhcccc
Q 040254          253 LETIDLYINMFTGSFLLTL-----TSC--------------------------RLLTALRLACNQLEGQIPPEIIKLKSL  301 (555)
Q Consensus       253 L~~L~l~~n~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~n~~~~~~~~~l~~l~~l  301 (555)
                      |++|++++|.+.+..+..+     ..+                          .+|++|++++|.+....          
T Consensus       278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~----------  347 (562)
T 3a79_B          278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV----------  347 (562)
T ss_dssp             EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC----------
T ss_pred             ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc----------
Confidence            5555555555544333332     222                          34555555555443111          


Q ss_pred             cccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccc--cchhhhCCCCCcEEEccCCccccccC-c
Q 040254          302 ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQ--VPLWLSKLTKLEVLLLSGNQITGSIP-G  378 (555)
Q Consensus       302 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~-~  378 (555)
                      ....+++|+.+++++|.+++..+..+     ..+++|++|++++|++++.  .|..+..+++|++|++++|++.+.+| .
T Consensus       348 ~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  422 (562)
T 3a79_B          348 CPPSPSSFTFLNFTQNVFTDSVFQGC-----STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR  422 (562)
T ss_dssp             CCSSCCCCCEEECCSSCCCTTTTTTC-----CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred             CccCCCCceEEECCCCccccchhhhh-----cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence            01567899999999999998766555     7889999999999999863  35678999999999999999997444 4


Q ss_pred             cccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccc
Q 040254          379 WFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSG  458 (555)
Q Consensus       379 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~  458 (555)
                      .+..+++|++|++++|++++..|..+.  +.|.                                    .|++++|+++ 
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~------------------------------------~L~L~~N~l~-  463 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVK------------------------------------VLDLHNNRIM-  463 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS------------------------------------EEECCSSCCC-
T ss_pred             hhcCcccCCEEECCCCCCCcchhhhhc--CcCC------------------------------------EEECCCCcCc-
Confidence            588999999999999999876665443  2333                                    5899999998 


Q ss_pred             cCChhccCCCCCCeeeCCCccceeecchh-hhCCccCCeeeCCCCCCC
Q 040254          459 RIPAETGQLKFLNVLDLGNNNFAGSIPNQ-ISQLTILERLDLSKNHLS  505 (555)
Q Consensus       459 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~  505 (555)
                      .+|..+..+++|++|++++|+|+ .+|.. +..+++|++|++++|+++
T Consensus       464 ~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          464 SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence            67777779999999999999999 55555 899999999999999997

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-35  Score=319.18  Aligned_cols=441  Identities=20%  Similarity=0.137  Sum_probs=305.1

Q ss_pred             cCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc
Q 040254           42 YHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ  121 (555)
Q Consensus        42 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  121 (555)
                      .+|+.+.  +++++|+|++|.++ .+++..|.++++|++|+|++|+|++..++.|..      +++|++|+|++|++++.
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~------L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS------LSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT------CTTCCEEECTTCCCCEE
T ss_pred             ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC------CCCCCEEEccCCcCCCC
Confidence            4666654  48999999999999 899889999999999999999999888777764      45999999999999986


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccc-ccccccCCCCCcEEEcccCccccCCCcCccC
Q 040254          122 VPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF-ISNDIINLTSLLVLELYSKELIGSIPRDIGK  200 (555)
Q Consensus       122 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~  200 (555)
                      .+.+|.++++|++|++++|++.+..+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  195 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  195 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence            677899999999999999998877667799999999999999999875 4677899999999999999998887777765


Q ss_pred             CCCC----CeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEc------------------
Q 040254          201 LTNL----KYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL------------------  258 (555)
Q Consensus       201 l~~L----~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l------------------  258 (555)
                      +.++    ..++++.|.+....+..+ ....++.+++.+|..........+..+..++...+                  
T Consensus       196 L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~  274 (635)
T 4g8a_A          196 LHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA  274 (635)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred             hhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence            5443    468889998885444333 33456677777664432222233333444333332                  


Q ss_pred             ---------------------------------------ccccccccccccccCCCCCcEEEcccceecccCChhhhhcc
Q 040254          259 ---------------------------------------YINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLK  299 (555)
Q Consensus       259 ---------------------------------------~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~  299 (555)
                                                             .++.+..  ...+.....++.|++.++.+.+..        
T Consensus       275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~--------  344 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFP--------  344 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCC--------
T ss_pred             cccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcC--------
Confidence                                                   2221111  011222233333333333332111        


Q ss_pred             cccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccccc--ccchhhhCCCCCcEEEccCCccccccC
Q 040254          300 SLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTG--QVPLWLSKLTKLEVLLLSGNQITGSIP  377 (555)
Q Consensus       300 ~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~  377 (555)
                         ...+..++.+.+..|........       ..+++|+.+++++|.+..  ..+..+..+.+|+.+++..+... ..+
T Consensus       345 ---~~~l~~L~~l~l~~n~~~~~~~~-------~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~  413 (635)
T 4g8a_A          345 ---TLKLKSLKRLTFTSNKGGNAFSE-------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMS  413 (635)
T ss_dssp             ---CCBCTTCCEEEEESCCSCCBCCC-------CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EEC
T ss_pred             ---cccchhhhhcccccccCCCCccc-------ccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccc
Confidence               11223455555555544433221       346788888888887653  34556677788888888888776 344


Q ss_pred             ccccCCCCCcEEEccCccCccccc----hhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccC
Q 040254          378 GWFGNLPSLFYFALSQNNISGEFP----KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLAN  453 (555)
Q Consensus       378 ~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~  453 (555)
                      ..+..+++|+.++++++......+    ..+.+++.+++..|.+.......               .........+++++
T Consensus       414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~---------------~~~~~~L~~L~Ls~  478 (635)
T 4g8a_A          414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---------------FNGLSSLEVLKMAG  478 (635)
T ss_dssp             SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT---------------TTTCTTCCEEECTT
T ss_pred             ccccccccccchhhhhccccccccccccccccccccccccccccccccccc---------------cccchhhhhhhhhh
Confidence            557778888888888877654332    22344445555555443222110               01112234799999


Q ss_pred             cccc-ccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCC-CCCCCCCCCCccCCCc
Q 040254          454 NSLS-GRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPS-GGQLHTFPPSSFEGNP  531 (555)
Q Consensus       454 n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~-~~~~~~l~~~~~~gNp  531 (555)
                      |.+. +..|..|..+++|++|+|++|+|++.+|..|..+++|++|+|++|+|+     +..|. ...+..+..+++++|.
T Consensus       479 N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~-----~l~~~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-----SLDTFPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-----BCCCGGGTTCTTCCEEECTTSC
T ss_pred             cccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC-----CCChhHHhCCCCCCEEECCCCc
Confidence            9854 457888999999999999999999999999999999999999999997     23332 1345677777888875


Q ss_pred             CC
Q 040254          532 EF  533 (555)
Q Consensus       532 ~~  533 (555)
                      ..
T Consensus       554 l~  555 (635)
T 4g8a_A          554 IM  555 (635)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.9e-34  Score=296.97  Aligned_cols=313  Identities=24%  Similarity=0.284  Sum_probs=206.4

Q ss_pred             CCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEcc
Q 040254           35 MNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFS  114 (555)
Q Consensus        35 ~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls  114 (555)
                      ...++.+.++.  ..+++++.|+++++.+. .+|.  +..+++|++|++++|.+++..+  +.      .+++|++|+++
T Consensus        32 ~~~~~~~~i~~--~~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~------~l~~L~~L~l~   98 (466)
T 1o6v_A           32 GKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LK------NLTKLVDILMN   98 (466)
T ss_dssp             TCSSTTSEECH--HHHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEECC
T ss_pred             cccccccccCh--hHhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hh------ccccCCEEECC
Confidence            33444444432  34678999999999887 6774  7779999999999999886543  32      56699999999


Q ss_pred             CCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCC
Q 040254          115 YNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSI  194 (555)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~  194 (555)
                      +|.+.+. +. +.++++|++|++++|.+... + .+.++++|++|++++|.++..  ..+..+++|++|+++ +.+... 
T Consensus        99 ~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~-  170 (466)
T 1o6v_A           99 NNQIADI-TP-LANLTNLTGLTLFNNQITDI-D-PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL-  170 (466)
T ss_dssp             SSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC-
T ss_pred             CCccccC-hh-hcCCCCCCEEECCCCCCCCC-h-HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc-
Confidence            9999864 33 88999999999998876654 3 288899999999999988864  348888999999986 444333 


Q ss_pred             CcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCC
Q 040254          195 PRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSC  274 (555)
Q Consensus       195 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~  274 (555)
                       ..+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+..+   +..+++|+.|++++|.+++.  ..+..+
T Consensus       171 -~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l  242 (466)
T 1o6v_A          171 -KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASL  242 (466)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             -hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcC
Confidence             2377888899999988888743  347778888888888887764322   56677888888888877653  346667


Q ss_pred             CCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccch
Q 040254          275 RLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPL  354 (555)
Q Consensus       275 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  354 (555)
                      ++|+.|++++|.+.+..+          +..+++|+.|++++|.+....+  +     ..+++|+.|++++|++++..+ 
T Consensus       243 ~~L~~L~l~~n~l~~~~~----------~~~l~~L~~L~l~~n~l~~~~~--~-----~~l~~L~~L~L~~n~l~~~~~-  304 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP----------LSGLTKLTELKLGANQISNISP--L-----AGLTALTNLELNENQLEDISP-  304 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG----------GTTCTTCSEEECCSSCCCCCGG--G-----TTCTTCSEEECCSSCCSCCGG-
T ss_pred             CCCCEEECCCCccccchh----------hhcCCCCCEEECCCCccCcccc--c-----cCCCccCeEEcCCCcccCchh-
Confidence            777777777776653221          2334455555555555444322  1     334445555555554443222 


Q ss_pred             hhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc
Q 040254          355 WLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS  397 (555)
Q Consensus       355 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  397 (555)
                       +..+++|++|++++|++.+..+  +..+++|++|++++|+++
T Consensus       305 -~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          305 -ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             -GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             -hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence             3444455555555554443332  344444555555444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.1e-35  Score=301.43  Aligned_cols=392  Identities=20%  Similarity=0.214  Sum_probs=215.4

Q ss_pred             eeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCC-------------CCEEEccCCcCccccCC
Q 040254           28 NILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTL-------------LEIIDLSYNSLSGELTG   94 (555)
Q Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~-------------L~~L~Ls~n~i~~~~~~   94 (555)
                      .+..+.+++|.+ +.+|.+|+++++|++|++++|.+.+.+|.. +..+++             +++|++++|++++.+. 
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-   88 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-   88 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCCC-
Confidence            345566777777 778888888888888888888777666654 333444             4788888887775321 


Q ss_pred             CCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccc
Q 040254           95 LIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDI  174 (555)
Q Consensus        95 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  174 (555)
                       ++        ++|++|++++|.+++ +|..   .++|++|++++|.+.+ ++..   .++|++|++++|.++++ | .+
T Consensus        89 -~~--------~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p-~~  149 (454)
T 1jl5_A           89 -LP--------PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-P-EL  149 (454)
T ss_dssp             -CC--------TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-C-CC
T ss_pred             -Cc--------CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-c-cc
Confidence             11        278888888888775 5543   3678888888776554 2211   15778888888887763 3 47


Q ss_pred             cCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCc
Q 040254          175 INLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLE  254 (555)
Q Consensus       175 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  254 (555)
                      .++++|++|++++|.+.+ +|..+   ++|++|++++|.+++ +| .+..+++|++|++++|.+.+ ++.    ..++|+
T Consensus       150 ~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~  218 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLE  218 (454)
T ss_dssp             TTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCC
T ss_pred             CCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCccc
Confidence            778888888888887764 44332   578888888887774 44 47777888888888877763 331    225778


Q ss_pred             EEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCC
Q 040254          255 TIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG  334 (555)
Q Consensus       255 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  334 (555)
                      .|++++|.++. .+ .+..+++|++|++++|++.+ +|..           .++|+.+++++|.+++.+         ..
T Consensus       219 ~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~~-----------~~~L~~L~l~~N~l~~l~---------~~  275 (454)
T 1jl5_A          219 SIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPDL-----------PPSLEALNVRDNYLTDLP---------EL  275 (454)
T ss_dssp             EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCSC-----------CTTCCEEECCSSCCSCCC---------CC
T ss_pred             EEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-cccc-----------ccccCEEECCCCcccccC---------cc
Confidence            88888877763 33 36777788888888777763 3221           246777777777776643         22


Q ss_pred             CCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhh
Q 040254          335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQ  414 (555)
Q Consensus       335 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~  414 (555)
                      +++|++|++++|.+++ ++.   ..++|++|++++|++++ ++.   ..++|++|++++|++++ +|..+.+++      
T Consensus       276 ~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~~~~L~------  340 (454)
T 1jl5_A          276 PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPALPPRLE------  340 (454)
T ss_dssp             CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCCCTTCC------
T ss_pred             cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-ccccCCcCC------
Confidence            3667777777777764 221   12567777777777763 221   12477777777777774 444433333      


Q ss_pred             ccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCcccee--ecchhhhCC-
Q 040254          415 NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAG--SIPNQISQL-  491 (555)
Q Consensus       415 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l-  491 (555)
                                                       .|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..+ 
T Consensus       341 ---------------------------------~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~  383 (454)
T 1jl5_A          341 ---------------------------------RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLR  383 (454)
T ss_dssp             ---------------------------------EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred             ---------------------------------EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhh
Confidence                                             4666666666 3444   35667777777777776  566666655 


Q ss_pred             ------------ccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCC
Q 040254          492 ------------TILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCS  535 (555)
Q Consensus       492 ------------~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~  535 (555)
                                  ++|++|++++|+++.  + +.+|.     ++..+.+.+|.+.|.
T Consensus       384 ~n~~~~~i~~~~~~L~~L~ls~N~l~~--~-~~iP~-----sl~~L~~~~~~~~~~  431 (454)
T 1jl5_A          384 MNSHLAEVPELPQNLKQLHVETNPLRE--F-PDIPE-----SVEDLRMNSERVVDP  431 (454)
T ss_dssp             CCC-----------------------------------------------------
T ss_pred             hcccccccccccCcCCEEECCCCcCCc--c-ccchh-----hHhheeCcCcccCCc
Confidence                        789999999999871  1 35664     355566667665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.1e-34  Score=293.22  Aligned_cols=345  Identities=26%  Similarity=0.335  Sum_probs=287.7

Q ss_pred             cCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcC
Q 040254           74 FLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA  153 (555)
Q Consensus        74 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l  153 (555)
                      .++++++|+++++.+...     +.+.   .+++|++|++++|.+++. +. +.++++|++|++++|.+....+  +.++
T Consensus        44 ~l~~l~~L~l~~~~i~~l-----~~~~---~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l  111 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSI-----DGVE---YLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANL  111 (466)
T ss_dssp             HHHTCCEEECCSSCCCCC-----TTGG---GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             HhccccEEecCCCCCccC-----cchh---hhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCC
Confidence            367899999999988742     2222   567999999999999964 44 9999999999999988776544  8999


Q ss_pred             CCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEEC
Q 040254          154 ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNL  233 (555)
Q Consensus       154 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  233 (555)
                      ++|++|++++|.+++..+  +..+++|++|++++|.+... + .+..+++|++|+++ +.+... + .+..+++|++|++
T Consensus       112 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l  184 (466)
T 1o6v_A          112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDI  184 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEEC
Confidence            999999999999988644  89999999999999998753 3 48899999999997 445423 2 3889999999999


Q ss_pred             cCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEE
Q 040254          234 MGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLF  313 (555)
Q Consensus       234 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~  313 (555)
                      ++|.+. .++  .+..+++|++|++++|.+.+..+  +..+++|++|++++|++.+. +         .+..+++|+.|+
T Consensus       185 ~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~---------~l~~l~~L~~L~  249 (466)
T 1o6v_A          185 SSNKVS-DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G---------TLASLTNLTDLD  249 (466)
T ss_dssp             CSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G---------GGGGCTTCSEEE
T ss_pred             cCCcCC-CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-h---------hhhcCCCCCEEE
Confidence            999987 343  47889999999999999987654  77899999999999988742 1         245678999999


Q ss_pred             eccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccC
Q 040254          314 LTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQ  393 (555)
Q Consensus       314 l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  393 (555)
                      +++|.+.+..+  +     ..+++|+.|++++|.+++..+  +..+++|++|++++|++.+..+  +..+++|++|++++
T Consensus       250 l~~n~l~~~~~--~-----~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          250 LANNQISNLAP--L-----SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF  318 (466)
T ss_dssp             CCSSCCCCCGG--G-----TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred             CCCCccccchh--h-----hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence            99999987654  2     678999999999999985444  7889999999999999986544  78899999999999


Q ss_pred             ccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCee
Q 040254          394 NNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVL  473 (555)
Q Consensus       394 n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L  473 (555)
                      |++++..|  +..++.|.                                    .|++++|++++.  ..+..+++|++|
T Consensus       319 n~l~~~~~--~~~l~~L~------------------------------------~L~l~~n~l~~~--~~l~~l~~L~~L  358 (466)
T 1o6v_A          319 NNISDISP--VSSLTKLQ------------------------------------RLFFYNNKVSDV--SSLANLTNINWL  358 (466)
T ss_dssp             SCCSCCGG--GGGCTTCC------------------------------------EEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             CcCCCchh--hccCccCC------------------------------------EeECCCCccCCc--hhhccCCCCCEE
Confidence            99986654  55555555                                    599999999864  468899999999


Q ss_pred             eCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          474 DLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       474 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      ++++|++++..|  +..+++|++|++++|+++
T Consensus       359 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          359 SAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             ECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             eCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            999999998777  889999999999999987

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.5e-35  Score=300.95  Aligned_cols=332  Identities=20%  Similarity=0.171  Sum_probs=253.6

Q ss_pred             CCCCceEecccCc--ceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEc
Q 040254            6 AAGGQIISCHTEK--SILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDL   83 (555)
Q Consensus         6 ~~~~~~~~c~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   83 (555)
                      ++++..|.|....  +.|..             ++++ .+|..+.  +++++|+|++|.+. .++...|..+++|++|+|
T Consensus         1 ~~Cp~~C~C~~~~~~v~c~~-------------~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L   63 (477)
T 2id5_A            1 TGCPPRCECSAQDRAVLCHR-------------KRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELEL   63 (477)
T ss_dssp             CCCSTTCEEETTTTEEECCS-------------CCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcccCCCeECCCCCEEEeCC-------------CCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEEC
Confidence            4678888897642  23333             3332 4555553  58999999999998 677778899999999999


Q ss_pred             cCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeec
Q 040254           84 SYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF  163 (555)
Q Consensus        84 s~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~  163 (555)
                      ++|.+++..+..|..      +++|++|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|++++
T Consensus        64 ~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~  137 (477)
T 2id5_A           64 NENIVSAVEPGAFNN------LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD  137 (477)
T ss_dssp             TTSCCCEECTTTTTT------CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC
T ss_pred             CCCccCEeChhhhhC------CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC
Confidence            999999877777764      44899999999999876666788999999999999988888888888899999999999


Q ss_pred             ccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccC
Q 040254          164 NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLS  243 (555)
Q Consensus       164 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  243 (555)
                      |.++.+.+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++
T Consensus       138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred             CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence            99988888888899999999999998876666668888889999999888887777778888888888888877665555


Q ss_pred             cccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCC
Q 040254          244 AYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEAT  323 (555)
Q Consensus       244 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~  323 (555)
                      ...+. ..+|+.|++++|.++......+..+++|+.|++++|.+.+.                                .
T Consensus       218 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------------------------~  264 (477)
T 2id5_A          218 PNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--------------------------------E  264 (477)
T ss_dssp             TTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE--------------------------------C
T ss_pred             ccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc--------------------------------C
Confidence            33332 34677777777776655555566666666666666665532                                2


Q ss_pred             CccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCcc
Q 040254          324 PNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG  398 (555)
Q Consensus       324 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  398 (555)
                      ...+     ..+++|+.|++++|++++..+.++..+++|++|++++|++++..+..|..+++|++|++++|++..
T Consensus       265 ~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          265 GSML-----HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             TTSC-----TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             hhhc-----cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            2222     456677788888887777777778888888888888888886666677788888888888888763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=298.43  Aligned_cols=278  Identities=18%  Similarity=0.142  Sum_probs=145.2

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      ++++|++++|.+++..+..|.++++|++|++++|.+....|..|.++++|++|++++|.++.+.+..|.++++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            45555555555554444455555555555555555544445555555555555555555555444455555666666666


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS  266 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  266 (555)
                      +|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+.
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEe
Confidence            66555555555555666666666666665555555556666666666666555 34434455666666666666666655


Q ss_pred             ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254          267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC  346 (555)
Q Consensus       267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  346 (555)
                      ....+..+++|++|++++|...+.++.....        ..+|+.|++++|.++..+...+     ..+++|+.|++++|
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--------GLNLTSLSITHCNLTAVPYLAV-----RHLVYLRFLNLSYN  258 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTT--------TCCCSEEEEESSCCCSCCHHHH-----TTCTTCCEEECCSS
T ss_pred             ChhhcccCcccceeeCCCCccccccCccccc--------CccccEEECcCCcccccCHHHh-----cCccccCeeECCCC
Confidence            5555666666666666665544333322111        1134444444443333222111     33444555555555


Q ss_pred             ccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCcc
Q 040254          347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG  398 (555)
Q Consensus       347 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  398 (555)
                      .+++..+..+..+++|++|++++|++.+..+..|..+++|++|+|++|++++
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred             cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence            5444444444445555555555555554444445555555555555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.9e-35  Score=297.13  Aligned_cols=381  Identities=22%  Similarity=0.213  Sum_probs=264.2

Q ss_pred             eeeeeccCCCCCccccCCccccCCCCC-------------CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccC
Q 040254           27 FNILMQPAMNKLVQRYHLPSIGNLTHI-------------SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELT   93 (555)
Q Consensus        27 ~~~~~~~~~~~~i~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~   93 (555)
                      ..+..+++++|.+.|.+|..++++++|             ++|++++|.++ .+|.    ..++|++|++++|++++ .|
T Consensus        34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~-lp  107 (454)
T 1jl5_A           34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LP  107 (454)
T ss_dssp             CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CC
T ss_pred             cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCCc-cc
Confidence            356677888899999999999998865             99999999998 6775    24799999999999996 33


Q ss_pred             CCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccccccc
Q 040254           94 GLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISND  173 (555)
Q Consensus        94 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  173 (555)
                      ..         ..+|++|++++|.+++ ++..   .++|++|++++|.+.+ +| ++.++++|++|++++|+++++ +..
T Consensus       108 ~~---------~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~~  171 (454)
T 1jl5_A          108 EL---------PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PDL  171 (454)
T ss_dssp             CC---------CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CCC
T ss_pred             cc---------cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CCC
Confidence            22         2489999999999985 3332   2799999999998776 77 699999999999999999874 332


Q ss_pred             ccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCC
Q 040254          174 IINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQL  253 (555)
Q Consensus       174 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L  253 (555)
                         ..+|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|..   .++|++|++++|.+. .++  .+..+++|
T Consensus       172 ---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp--~~~~l~~L  239 (454)
T 1jl5_A          172 ---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP--ELQNLPFL  239 (454)
T ss_dssp             ---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC--CCTTCTTC
T ss_pred             ---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc--ccCCCCCC
Confidence               3599999999999976 55 58999999999999999984 4443   258999999999988 676  38899999


Q ss_pred             cEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccC
Q 040254          254 ETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD  333 (555)
Q Consensus       254 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  333 (555)
                      +.|++++|.+++.. .   ..++|++|++++|++.+ +|..           .++|+.+++++|.+++.+         .
T Consensus       240 ~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~-l~~~-----------~~~L~~L~ls~N~l~~l~---------~  294 (454)
T 1jl5_A          240 TTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTD-LPEL-----------PQSLTFLDVSENIFSGLS---------E  294 (454)
T ss_dssp             CEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSC-CCCC-----------CTTCCEEECCSSCCSEES---------C
T ss_pred             CEEECCCCcCCccc-c---cccccCEEECCCCcccc-cCcc-----------cCcCCEEECcCCccCccc---------C
Confidence            99999999998633 2   24899999999999884 4332           258999999999988753         2


Q ss_pred             CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254          334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE  413 (555)
Q Consensus       334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~  413 (555)
                      ..++|+.|++++|++++ ++.   ..++|++|++++|++++ +|..   +++|++|++++|+++ .+|..+.+++.|++.
T Consensus       295 ~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~~l~~L~~L~L~  365 (454)
T 1jl5_A          295 LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPELPQNLKQLHVE  365 (454)
T ss_dssp             CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECC
T ss_pred             cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccchhhhccEEECC
Confidence            23689999999999884 221   12589999999999995 5543   589999999999998 455555666666666


Q ss_pred             hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCcccee--ecchhhhCC
Q 040254          414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAG--SIPNQISQL  491 (555)
Q Consensus       414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l  491 (555)
                      +|.+...+. +|..                    .-+++.|.+.+.+|..   +++|++|++++|.+++  .+|      
T Consensus       366 ~N~l~~l~~-ip~~--------------------l~~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP------  415 (454)
T 1jl5_A          366 YNPLREFPD-IPES--------------------VEDLRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP------  415 (454)
T ss_dssp             SSCCSSCCC-CCTT--------------------CCEEECCC--------------------------------------
T ss_pred             CCCCCcCCC-ChHH--------------------HHhhhhcccccccccc---cCcCCEEECCCCcCCccccch------
Confidence            666544221 1100                    0223344555555542   4789999999999996  444      


Q ss_pred             ccCCeeeCCCCCCC
Q 040254          492 TILERLDLSKNHLS  505 (555)
Q Consensus       492 ~~L~~L~Ls~N~l~  505 (555)
                      ++++.|.+++|.+.
T Consensus       416 ~sl~~L~~~~~~~~  429 (454)
T 1jl5_A          416 ESVEDLRMNSERVV  429 (454)
T ss_dssp             --------------
T ss_pred             hhHhheeCcCcccC
Confidence            35777888888875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.8e-34  Score=294.83  Aligned_cols=222  Identities=19%  Similarity=0.148  Sum_probs=188.8

Q ss_pred             CCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC
Q 040254           37 KLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN  116 (555)
Q Consensus        37 ~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n  116 (555)
                      ..+.+..+.++.++++|++|++++|.+. .+|  .|..+++|++|++++|++++..   +.      .+++|++|++++|
T Consensus        28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~------~l~~L~~L~Ls~N   95 (457)
T 3bz5_A           28 FEMQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLD---LS------QNTNLTYLACDSN   95 (457)
T ss_dssp             TTCCTTSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC---CT------TCTTCSEEECCSS
T ss_pred             cCcCcccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeEc---cc------cCCCCCEEECcCC
Confidence            3445566668889999999999999998 566  3788999999999999998742   22      5669999999999


Q ss_pred             cCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCc
Q 040254          117 DFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPR  196 (555)
Q Consensus       117 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  196 (555)
                      .+++ ++  ++++++|++|++++|.+.+ ++  +..+++|++|++++|.++++   .+..+++|++|++++|...+.+  
T Consensus        96 ~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--  164 (457)
T 3bz5_A           96 KLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--  164 (457)
T ss_dssp             CCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--
T ss_pred             CCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--
Confidence            9996 43  8899999999999998776 44  88999999999999999985   3889999999999999765555  


Q ss_pred             CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCC
Q 040254          197 DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRL  276 (555)
Q Consensus       197 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~  276 (555)
                      .+..+++|++|++++|.+++ ++  +..+++|++|++++|.+.+ +   .+..+++|+.|++++|.+++. +  +..+++
T Consensus       165 ~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~  234 (457)
T 3bz5_A          165 DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQ  234 (457)
T ss_dssp             CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCccccc-C--ccccCC
Confidence            47789999999999999985 44  7889999999999999884 3   378899999999999999974 3  788999


Q ss_pred             CcEEEcccceecccC
Q 040254          277 LTALRLACNQLEGQI  291 (555)
Q Consensus       277 L~~L~l~~n~~~~~~  291 (555)
                      |+.|++++|++.+..
T Consensus       235 L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          235 LTYFDCSVNPLTELD  249 (457)
T ss_dssp             CSEEECCSSCCSCCC
T ss_pred             CCEEEeeCCcCCCcC
Confidence            999999999988653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.8e-34  Score=286.68  Aligned_cols=335  Identities=18%  Similarity=0.187  Sum_probs=181.7

Q ss_pred             CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254           75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA  154 (555)
Q Consensus        75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~  154 (555)
                      ++++++|+++++.++..++..+.      .+++|++|++++|.+++..+.+|.++++|++|++++|.+....|..+.+++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  117 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLD------SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP  117 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHH------HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCCceEEEecCCchhhCChhHhc------ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence            45566666666555533322222      233555555555555544444555555555555555554444444445555


Q ss_pred             CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254          155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM  234 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  234 (555)
                      +|++|++++|.++.+.+..|..+++|++|++++|.+....+..+..+++|++|++++|.+++.                 
T Consensus       118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------  180 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------------  180 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------------
T ss_pred             CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-----------------
Confidence            555555555555444333344444455555544444444344444444444444444444321                 


Q ss_pred             CccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEe
Q 040254          235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFL  314 (555)
Q Consensus       235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l  314 (555)
                                 .+..+++|+.+++++|.+++.     ...+.|++|++++|.+.                          
T Consensus       181 -----------~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~--------------------------  218 (390)
T 3o6n_A          181 -----------DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSIN--------------------------  218 (390)
T ss_dssp             -----------CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCC--------------------------
T ss_pred             -----------ccccccccceeeccccccccc-----CCCCcceEEECCCCeee--------------------------
Confidence                       123334444444444443321     12234455555544433                          


Q ss_pred             ccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCc
Q 040254          315 TMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN  394 (555)
Q Consensus       315 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  394 (555)
                            ..+.        ..+++|+.|++++|.+++.  .++..+++|++|++++|++.+..|..+..+++|++|++++|
T Consensus       219 ------~~~~--------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (390)
T 3o6n_A          219 ------VVRG--------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN  282 (390)
T ss_dssp             ------EEEC--------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred             ------eccc--------cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence                  1110        1234566666666666532  45666667777777777776666666667777777777777


Q ss_pred             cCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeee
Q 040254          395 NISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLD  474 (555)
Q Consensus       395 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~  474 (555)
                      ++++ ++..+..++.|.                                    .|++++|+++ .+|..+..+++|++|+
T Consensus       283 ~l~~-~~~~~~~l~~L~------------------------------------~L~L~~n~l~-~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          283 RLVA-LNLYGQPIPTLK------------------------------------VLDLSHNHLL-HVERNQPQFDRLENLY  324 (390)
T ss_dssp             CCCE-EECSSSCCTTCC------------------------------------EEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             cCcc-cCcccCCCCCCC------------------------------------EEECCCCcce-ecCccccccCcCCEEE
Confidence            6663 233333333333                                    4667777666 4566667778888899


Q ss_pred             CCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCcc
Q 040254          475 LGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDI  537 (555)
Q Consensus       475 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~~  537 (555)
                      +++|+|++. +  +..+++|++|++++|+++...+..      .+..+....+.+++..|..+
T Consensus       325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~------~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA------LFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH------HTTTCCTTTBCCCCSCCCTT
T ss_pred             CCCCcccee-C--chhhccCCEEEcCCCCccchhHHH------HHHHHHhhcccccCceeccc
Confidence            999988844 3  667888999999999886322221      23345555677888888753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-32  Score=276.90  Aligned_cols=312  Identities=19%  Similarity=0.168  Sum_probs=266.0

Q ss_pred             CCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccC
Q 040254           49 NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGN  128 (555)
Q Consensus        49 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  128 (555)
                      .++++++|+++++.+. .+|..+|..+++|++|++++|.+++..+..+..      +++|++|++++|.+++..+..+++
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~  115 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY------AHTIQKLYMGFNAIRYLPPHVFQN  115 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTT------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccC------CCCcCEEECCCCCCCcCCHHHhcC
Confidence            4689999999999998 899999999999999999999999877766654      459999999999999877888999


Q ss_pred             CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeee
Q 040254          129 CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLL  208 (555)
Q Consensus       129 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  208 (555)
                      +++|++|++++|.+....+..|.++++|++|++++|.++.+.+..+..+++|++|++++|.+...   .+..+++|++|+
T Consensus       116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~  192 (390)
T 3o6n_A          116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN  192 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred             CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence            99999999999987755445578999999999999999998888899999999999999998754   256679999999


Q ss_pred             CccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceec
Q 040254          209 LYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE  288 (555)
Q Consensus       209 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  288 (555)
                      +++|.+.+     +...++|++|++++|.+. .++.   ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.
T Consensus       193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          193 VSYNLLST-----LAIPIAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE  261 (390)
T ss_dssp             CCSSCCSE-----EECCSSCSEEECCSSCCC-EEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             cccccccc-----cCCCCcceEEECCCCeee-eccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence            99998873     234568999999999987 3432   3457999999999999864  56889999999999999998


Q ss_pred             ccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEcc
Q 040254          289 GQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLS  368 (555)
Q Consensus       289 ~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  368 (555)
                      +..|..+        ..+++|+.|++++|.++..+...      ..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus       262 ~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~  326 (390)
T 3o6n_A          262 KIMYHPF--------VKMQRLERLYISNNRLVALNLYG------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD  326 (390)
T ss_dssp             EEESGGG--------TTCSSCCEEECCSSCCCEEECSS------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred             CcChhHc--------cccccCCEEECCCCcCcccCccc------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECC
Confidence            6656554        45678999999999998764322      56789999999999998 567778889999999999


Q ss_pred             CCccccccCccccCCCCCcEEEccCccCccc
Q 040254          369 GNQITGSIPGWFGNLPSLFYFALSQNNISGE  399 (555)
Q Consensus       369 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  399 (555)
                      +|+++.. +  +..+++|++|++++|++...
T Consensus       327 ~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          327 HNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             SSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCcccee-C--chhhccCCEEEcCCCCccch
Confidence            9999854 3  67789999999999999753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.6e-33  Score=294.09  Aligned_cols=335  Identities=19%  Similarity=0.190  Sum_probs=186.2

Q ss_pred             CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254           75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA  154 (555)
Q Consensus        75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~  154 (555)
                      +++++.|++++|.+...++..+.      .+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.+++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  123 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLD------SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP  123 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHH------HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHc------cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence            45556666666555543332222      223555555555555544444555555555555555554444444444555


Q ss_pred             CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254          155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM  234 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  234 (555)
                      +|++|++++|.++.+.+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+.                 
T Consensus       124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------  186 (597)
T 3oja_B          124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------------  186 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-----------------
T ss_pred             CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-----------------
Confidence            555555555555444443444444444444444444444444444444444444444444321                 


Q ss_pred             CccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEe
Q 040254          235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFL  314 (555)
Q Consensus       235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l  314 (555)
                              +   +..+++|+.|++++|.+.+     +...+.|+.|++++|.+..                         
T Consensus       187 --------~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~-------------------------  225 (597)
T 3oja_B          187 --------D---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV-------------------------  225 (597)
T ss_dssp             --------C---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE-------------------------
T ss_pred             --------C---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc-------------------------
Confidence                    1   2333444444444444432     1222345555555554431                         


Q ss_pred             ccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCc
Q 040254          315 TMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN  394 (555)
Q Consensus       315 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  394 (555)
                             ...        ..+++|+.|++++|.+++  +.++..+++|++|++++|.+.+..|..|..+++|++|+|++|
T Consensus       226 -------~~~--------~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  288 (597)
T 3oja_B          226 -------VRG--------PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN  288 (597)
T ss_dssp             -------EEC--------SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred             -------ccc--------ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence                   110        112456666666666653  355666777777777777777666777777777777777777


Q ss_pred             cCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeee
Q 040254          395 NISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLD  474 (555)
Q Consensus       395 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~  474 (555)
                      .+++ +|..+..++.|.                                    .|++++|.++ .+|..+..+++|+.|+
T Consensus       289 ~l~~-l~~~~~~l~~L~------------------------------------~L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          289 RLVA-LNLYGQPIPTLK------------------------------------VLDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             CCCE-EECSSSCCTTCC------------------------------------EEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCC-CCcccccCCCCc------------------------------------EEECCCCCCC-ccCcccccCCCCCEEE
Confidence            7764 333333333333                                    4777777777 5666677788889999


Q ss_pred             CCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCcc
Q 040254          475 LGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDI  537 (555)
Q Consensus       475 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~~  537 (555)
                      |++|.+++. +  +..+++|+.|+|++|+++...+.+      .+..+....+.+++..|+.+
T Consensus       331 L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~------~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          331 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA------LFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH------HTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHH------HHHHHhhhccccccccCCcc
Confidence            999998844 3  567789999999999986222222      23345556677888888763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.8e-32  Score=276.85  Aligned_cols=305  Identities=18%  Similarity=0.166  Sum_probs=232.0

Q ss_pred             ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254           26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF  105 (555)
Q Consensus        26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  105 (555)
                      ...+..+++++|.+++. | .|..+++|++|++++|.++ .++   +..+++|++|++++|++++..   +.      .+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~---~~------~l  105 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD---VT------PL  105 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC---CT------TC
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceee---cC------CC
Confidence            34677889999999986 4 7999999999999999998 565   778999999999999999642   22      56


Q ss_pred             CCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEc
Q 040254          106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL  185 (555)
Q Consensus       106 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L  185 (555)
                      ++|++|++++|.+++ ++  ++.+++|++|++++|.+.+.   .+.++++|++|++++|...+..  .+..+++|++|++
T Consensus       106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence            699999999999996 44  88999999999999988774   3788999999999999543333  5788999999999


Q ss_pred             ccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254          186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       186 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      ++|.+.+ +|  +..+++|+.|++++|.+++.   .+..+++|++|++++|.+.+ ++   +..+++|+.|++++|.+++
T Consensus       178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC
T ss_pred             CCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCC
Confidence            9999976 44  78899999999999999854   48889999999999999985 55   7789999999999999987


Q ss_pred             cccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccC
Q 040254          266 SFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG  345 (555)
Q Consensus       266 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~  345 (555)
                      ..   ...+++|+.|+++.+.+.                      .+++++|.+.+..+.       ..+++|+.|++++
T Consensus       248 ~~---~~~l~~L~~L~l~~n~L~----------------------~L~l~~n~~~~~~~~-------~~l~~L~~L~Ls~  295 (457)
T 3bz5_A          248 LD---VSTLSKLTTLHCIQTDLL----------------------EIDLTHNTQLIYFQA-------EGCRKIKELDVTH  295 (457)
T ss_dssp             CC---CTTCTTCCEEECTTCCCS----------------------CCCCTTCTTCCEEEC-------TTCTTCCCCCCTT
T ss_pred             cC---HHHCCCCCEEeccCCCCC----------------------EEECCCCccCCcccc-------cccccCCEEECCC
Confidence            64   456778888887776443                      223333332211110       2344555555555


Q ss_pred             cccccccch--------hhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCcc
Q 040254          346 CQLTGQVPL--------WLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG  398 (555)
Q Consensus       346 n~i~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  398 (555)
                      |...+.+|.        .+..+++|++|++++|++++. +  +..+++|+.|++++|++++
T Consensus       296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             CcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence            543333321        133446777777777777753 2  6677777777777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.2e-31  Score=263.64  Aligned_cols=128  Identities=25%  Similarity=0.372  Sum_probs=88.3

Q ss_pred             CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254          334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE  413 (555)
Q Consensus       334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~  413 (555)
                      .+++|++|++++|++++..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|++++.  ..+..++.|.  
T Consensus       219 ~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~--  290 (347)
T 4fmz_A          219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN--  290 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS--
T ss_pred             cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC--
Confidence            34566666666666653322  66677777777777777643  3466777777777777777643  2344444444  


Q ss_pred             hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCcc
Q 040254          414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTI  493 (555)
Q Consensus       414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  493 (555)
                                                        .|++++|++++..+..+..+++|++|++++|++++..|  +..+++
T Consensus       291 ----------------------------------~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~  334 (347)
T 4fmz_A          291 ----------------------------------SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK  334 (347)
T ss_dssp             ----------------------------------EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTT
T ss_pred             ----------------------------------EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhc
Confidence                                              47777777777777778888899999999999986666  788899


Q ss_pred             CCeeeCCCCCCC
Q 040254          494 LERLDLSKNHLS  505 (555)
Q Consensus       494 L~~L~Ls~N~l~  505 (555)
                      |++|++++|+|+
T Consensus       335 L~~L~l~~N~i~  346 (347)
T 4fmz_A          335 MDSADFANQVIK  346 (347)
T ss_dssp             CSEESSSCC---
T ss_pred             cceeehhhhccc
Confidence            999999999885

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.8e-32  Score=289.26  Aligned_cols=310  Identities=18%  Similarity=0.175  Sum_probs=203.2

Q ss_pred             CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254          155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM  234 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  234 (555)
                      +++.++++++.+..+++..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            34444444444444433334444444444444444444433344444444444444444444333444444444444444


Q ss_pred             CccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEe
Q 040254          235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFL  314 (555)
Q Consensus       235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l  314 (555)
                      +|.+. .++...|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..           +..+++|+.+++
T Consensus       132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~l~~L~~L~l  199 (597)
T 3oja_B          132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----------LSLIPSLFHANV  199 (597)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----------GGGCTTCSEEEC
T ss_pred             CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----------hhhhhhhhhhhc
Confidence            44444 333333444455555555555554444444555555555555555544221           222345566666


Q ss_pred             ccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCc
Q 040254          315 TMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN  394 (555)
Q Consensus       315 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  394 (555)
                      ++|.++..          ...++|+.|++++|.+.... ..+  .++|+.|++++|.+++  +..+..+++|++|+|++|
T Consensus       200 ~~n~l~~l----------~~~~~L~~L~ls~n~l~~~~-~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N  264 (597)
T 3oja_B          200 SYNLLSTL----------AIPIAVEELDASHNSINVVR-GPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN  264 (597)
T ss_dssp             CSSCCSEE----------ECCTTCSEEECCSSCCCEEE-CSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSS
T ss_pred             ccCccccc----------cCCchhheeeccCCcccccc-ccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCC
Confidence            66655443          34567999999999987433 322  3689999999999985  367889999999999999


Q ss_pred             cCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeee
Q 040254          395 NISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLD  474 (555)
Q Consensus       395 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~  474 (555)
                      .+++..|..+..++.|.                                    .|++++|.+++ +|..+..+++|++|+
T Consensus       265 ~l~~~~~~~~~~l~~L~------------------------------------~L~Ls~N~l~~-l~~~~~~l~~L~~L~  307 (597)
T 3oja_B          265 ELEKIMYHPFVKMQRLE------------------------------------RLYISNNRLVA-LNLYGQPIPTLKVLD  307 (597)
T ss_dssp             CCCEEESGGGTTCSSCC------------------------------------EEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred             ccCCCCHHHhcCccCCC------------------------------------EEECCCCCCCC-CCcccccCCCCcEEE
Confidence            99988888888888877                                    59999999995 577778899999999


Q ss_pred             CCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCc
Q 040254          475 LGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSD  536 (555)
Q Consensus       475 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~  536 (555)
                      |++|.++ .+|..+..+++|+.|+|++|+|+      .+| ...+..+..++++||||.|++
T Consensus       308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~------~~~-~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV------TLK-LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCSSCCC-CCGGGHHHHTTCSEEECCSSCCC------CCC-CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCCCC-ccCcccccCCCCCEEECCCCCCC------CcC-hhhcCCCCEEEeeCCCCCChh
Confidence            9999999 77888899999999999999997      223 335678889999999999975

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.3e-31  Score=261.47  Aligned_cols=308  Identities=20%  Similarity=0.240  Sum_probs=246.4

Q ss_pred             cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254           46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR  125 (555)
Q Consensus        46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  125 (555)
                      .+..+++|++|+++++.+. .++.  +..+++|++|++++|++++..+  +.      .+++|++|++++|.+++ + ..
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~------~l~~L~~L~L~~n~i~~-~-~~  105 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LS------NLVKLTNLYIGTNKITD-I-SA  105 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEECCSSCCCC-C-GG
T ss_pred             cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hh------cCCcCCEEEccCCcccC-c-hH
Confidence            4567889999999999987 6764  7789999999999999885433  22      56699999999999885 3 46


Q ss_pred             ccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCC
Q 040254          126 LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK  205 (555)
Q Consensus       126 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~  205 (555)
                      +.++++|++|++++|.+... +. +..+++|++|++++|...... ..+..+++|++|++++|.+....+  +..+++|+
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~  180 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY  180 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred             HcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCC
Confidence            88999999999998887654 33 888999999999999654433 348899999999999998865433  77889999


Q ss_pred             eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccc
Q 040254          206 YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN  285 (555)
Q Consensus       206 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  285 (555)
                      +|++++|.+.+. +. +..+++|+++++++|.+.+ .+  .+..+++|++|++++|.+++..+  +..+++|++|++++|
T Consensus       181 ~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          181 SLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITD-IT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN  253 (347)
T ss_dssp             EEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             EEEccCCccccc-cc-ccCCCccceeecccCCCCC-Cc--hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence            999999998743 33 7888999999999998873 33  27788999999999999886544  788899999999999


Q ss_pred             eecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEE
Q 040254          286 QLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVL  365 (555)
Q Consensus       286 ~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  365 (555)
                      .+.+.  +        .+..+++|+.+++++|.++...  .+     ..+++|+.|++++|.+++..+..+..+++|++|
T Consensus       254 ~l~~~--~--------~~~~l~~L~~L~l~~n~l~~~~--~~-----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          254 QISDI--N--------AVKDLTKLKMLNVGSNQISDIS--VL-----NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             CCCCC--G--------GGTTCTTCCEEECCSSCCCCCG--GG-----GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             ccCCC--h--------hHhcCCCcCEEEccCCccCCCh--hh-----cCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            87742  1        2456778999999999887752  12     667889999999999988888888999999999


Q ss_pred             EccCCccccccCccccCCCCCcEEEccCccCc
Q 040254          366 LLSGNQITGSIPGWFGNLPSLFYFALSQNNIS  397 (555)
Q Consensus       366 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  397 (555)
                      ++++|++++..|  +..+++|++|++++|+++
T Consensus       317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          317 FLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999986655  778899999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=6.5e-32  Score=262.61  Aligned_cols=260  Identities=30%  Similarity=0.470  Sum_probs=157.7

Q ss_pred             CCCcEEEcccCcccc--CCCcCccCCCCCCeeeCcc-CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCc
Q 040254          178 TSLLVLELYSKELIG--SIPRDIGKLTNLKYLLLYR-NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLE  254 (555)
Q Consensus       178 ~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  254 (555)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.++ ..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCCCCC
Confidence            345566666666555  5555555556666666653 55554555555555555555555555543333 2344444444


Q ss_pred             EEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCC
Q 040254          255 TIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG  334 (555)
Q Consensus       255 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  334 (555)
                      +|++++|.+.+..+..+..++                                                           
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~-----------------------------------------------------------  149 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLP-----------------------------------------------------------  149 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCT-----------------------------------------------------------
T ss_pred             EEeCCCCccCCcCChHHhcCC-----------------------------------------------------------
Confidence            444444444433333333334                                                           


Q ss_pred             CCCccEEEccCcccccccchhhhCCC-CCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254          335 FQNLRAVSLAGCQLTGQVPLWLSKLT-KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE  413 (555)
Q Consensus       335 ~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~  413 (555)
                        +|++|++++|.+++.+|..+..++ .|++|++++|++.+..|..+..+. |++|++++|.+++..|..+..++.|.  
T Consensus       150 --~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~--  224 (313)
T 1ogq_A          150 --NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ--  224 (313)
T ss_dssp             --TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS--
T ss_pred             --CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC--
Confidence              444444444444444444444444 455555555555544444444444 55555555555544444444444443  


Q ss_pred             hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCcc
Q 040254          414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTI  493 (555)
Q Consensus       414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  493 (555)
                                                        .|++++|.+++..|. +..+++|++|++++|++++.+|..+..+++
T Consensus       225 ----------------------------------~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  269 (313)
T 1ogq_A          225 ----------------------------------KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             ----------------------------------EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             ----------------------------------EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence                                              355555555544333 566788999999999999999999999999


Q ss_pred             CCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCcccCCCCC
Q 040254          494 LERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSST  543 (555)
Q Consensus       494 L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~~~~~~~~  543 (555)
                      |++|+|++|+|+     |.+|....+..+..+++.|||++|+.|+. .|.
T Consensus       270 L~~L~Ls~N~l~-----~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C~  313 (313)
T 1ogq_A          270 LHSLNVSFNNLC-----GEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             CCEEECCSSEEE-----EECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred             CCEEECcCCccc-----ccCCCCccccccChHHhcCCCCccCCCCC-CCC
Confidence            999999999875     88998888888999999999999998774 573

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.9e-34  Score=292.60  Aligned_cols=235  Identities=14%  Similarity=0.072  Sum_probs=115.3

Q ss_pred             CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc-cCC
Q 040254           51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL-GNC  129 (555)
Q Consensus        51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l  129 (555)
                      ++|++|+++++.+++......|..+++|++|++++|++++.....++...  ..+++|++|++++|.+.+..+..+ ..+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL--RVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH--HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH--HhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            45666777777665322233466677777777777766643222222211  134466666666666654222222 223


Q ss_pred             C----CCcEEEccCCCCCC----CCcHhhhcCCCCCeeEeecccCccccccccc-----CCCCCcEEEcccCccccCC--
Q 040254          130 S----RLKSFQAGYSNLLR----SLPDDIYAAASLEEPSLHFNKLSGFISNDII-----NLTSLLVLELYSKELIGSI--  194 (555)
Q Consensus       130 ~----~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~~~~~~--  194 (555)
                      +    +|++|++++|.+..    .++..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+....  
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            3    56666666665542    3355556666666666666665543222221     2345666666666554322  


Q ss_pred             --CcCccCCCCCCeeeCccCcCcccCCcccc-----CCCCCCEEECcCccCccc----cCcccccCCCCCcEEEcccccc
Q 040254          195 --PRDIGKLTNLKYLLLYRNNLSGSLPSSMM-----NCTNLKTLNLMGNLFAGN----LSAYNFSVLSQLETIDLYINMF  263 (555)
Q Consensus       195 --~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~  263 (555)
                        +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+...    ++ ..+..+++|++|++++|.+
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH-HHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH-HHHHhCCCccEEeccCCcC
Confidence              22334445566666665555432211111     234555555555554421    11 2233445555555555554


Q ss_pred             ccccc-----ccccCCCCCcEEEcccceec
Q 040254          264 TGSFL-----LTLTSCRLLTALRLACNQLE  288 (555)
Q Consensus       264 ~~~~~-----~~l~~~~~L~~L~l~~n~~~  288 (555)
                      ++...     ..+..+++|++|++++|.++
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~  269 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGIT  269 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            43221     11123455555555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.6e-33  Score=288.70  Aligned_cols=355  Identities=20%  Similarity=0.158  Sum_probs=188.5

Q ss_pred             CCCCEEEccCCcCccccCCC-CccccccCCCCCccEEEccCCcCCc----cCCccccCCCCCcEEEccCCCCCCCCcHhh
Q 040254           76 TLLEIIDLSYNSLSGELTGL-IPSLAWNHSFCSMRLLDFSYNDFSS----QVPPRLGNCSRLKSFQAGYSNLLRSLPDDI  150 (555)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~  150 (555)
                      ++|++|++++|++++..... ++      .+++|++|++++|.+++    .++..+..+++|++|++++|.+....+..+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~------~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l   76 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLP------LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV   76 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHH------HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccceehhhhhcccCchhHHHHHh------hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence            45677777777766432111 11      34477777777777664    234556667777777777766544333333


Q ss_pred             h-cCC----CCCeeEeecccCcc----cccccccCCCCCcEEEcccCccccCCCcCc-----cCCCCCCeeeCccCcCcc
Q 040254          151 Y-AAA----SLEEPSLHFNKLSG----FISNDIINLTSLLVLELYSKELIGSIPRDI-----GKLTNLKYLLLYRNNLSG  216 (555)
Q Consensus       151 ~-~l~----~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~  216 (555)
                      . .++    +|++|++++|.++.    ..+..+..+++|++|++++|.+....+..+     ...++|++|++++|.++.
T Consensus        77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            2 233    57777777776663    234556666677777777666543322221     123456666666666653


Q ss_pred             c----CCccccCCCCCCEEECcCccCccccCcccc-----cCCCCCcEEEccccccccc----ccccccCCCCCcEEEcc
Q 040254          217 S----LPSSMMNCTNLKTLNLMGNLFAGNLSAYNF-----SVLSQLETIDLYINMFTGS----FLLTLTSCRLLTALRLA  283 (555)
Q Consensus       217 ~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~  283 (555)
                      .    ++..+..+++|++|++++|.+..... ..+     ...++|++|++++|.+++.    .+..+..+++|++|+++
T Consensus       157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  235 (461)
T 1z7x_W          157 ASCEPLASVLRAKPDFKELTVSNNDINEAGV-RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  235 (461)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBCHHHHH-HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCCcchHHH-HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence            2    23334445666666666665542211 111     1234566666666655542    23334445555555555


Q ss_pred             cceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccc----cchhhhCC
Q 040254          284 CNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQ----VPLWLSKL  359 (555)
Q Consensus       284 ~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~l  359 (555)
                      +|.+.+.....                                ....+....++|++|++++|.++..    ++..+..+
T Consensus       236 ~n~l~~~~~~~--------------------------------l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  283 (461)
T 1z7x_W          236 SNKLGDVGMAE--------------------------------LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK  283 (461)
T ss_dssp             SSBCHHHHHHH--------------------------------HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             CCcCChHHHHH--------------------------------HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence            55544221111                                1111112345566666666655532    34445556


Q ss_pred             CCCcEEEccCCccccccCcccc-----CCCCCcEEEccCccCccc----cchhhhccccchhhhccCCCCCCCCCccccC
Q 040254          360 TKLEVLLLSGNQITGSIPGWFG-----NLPSLFYFALSQNNISGE----FPKELSRLQPLVIEQNKFNRNKPDLPFFLFP  430 (555)
Q Consensus       360 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~  430 (555)
                      ++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..++.|.                   
T Consensus       284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-------------------  344 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL-------------------  344 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC-------------------
T ss_pred             CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc-------------------
Confidence            6666666666666543222221     124666666666666543    223333334443                   


Q ss_pred             CCcccccccccccCCCCEEEccCccccccCChhccC-----CCCCCeeeCCCcccee----ecchhhhCCccCCeeeCCC
Q 040254          431 NQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ-----LKFLNVLDLGNNNFAG----SIPNQISQLTILERLDLSK  501 (555)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~Ls~  501 (555)
                                       .|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++|++|++++
T Consensus       345 -----------------~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~  407 (461)
T 1z7x_W          345 -----------------ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN  407 (461)
T ss_dssp             -----------------EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred             -----------------EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence                             4666666665443333321     4567777777776664    5566666667777777777


Q ss_pred             CCCC
Q 040254          502 NHLS  505 (555)
Q Consensus       502 N~l~  505 (555)
                      |+|+
T Consensus       408 N~i~  411 (461)
T 1z7x_W          408 NCLG  411 (461)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            7665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.4e-29  Score=248.69  Aligned_cols=288  Identities=18%  Similarity=0.209  Sum_probs=184.9

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR  131 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  131 (555)
                      +++.++++++.+. .+|...   .++|++|++++|.+++..+..+..      +++|++|++++|.+++..|.++.++++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~  103 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKG------LQHLYALVLVNNKISKIHEKAFSPLRK  103 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhC------CCCCcEEECCCCccCccCHhHhhCcCC
Confidence            6788888888777 677543   357888888888877666655543      447888888888887766777888888


Q ss_pred             CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc--CCCcCccCCCCCCeeeC
Q 040254          132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG--SIPRDIGKLTNLKYLLL  209 (555)
Q Consensus       132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L  209 (555)
                      |++|++++|.+. .+|..+.  ++|++|++++|.++.+.+..|..+++|++|++++|.+..  ..+..+..+ +|++|++
T Consensus       104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l  179 (332)
T 2ft3_A          104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI  179 (332)
T ss_dssp             CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred             CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence            888888877655 4444443  677888888888777666677778888888888777743  555666666 7777888


Q ss_pred             ccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecc
Q 040254          210 YRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG  289 (555)
Q Consensus       210 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  289 (555)
                      ++|.+++ +|..+.  ++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++. 
T Consensus       180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-  254 (332)
T 2ft3_A          180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-  254 (332)
T ss_dssp             CSSBCSS-CCSSSC--SSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             cCCCCCc-cCcccc--CCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence            8777773 444433  56777777777776 333345666777777777777776665556666677777777777665 


Q ss_pred             cCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhC------CCCCc
Q 040254          290 QIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSK------LTKLE  363 (555)
Q Consensus       290 ~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~------l~~L~  363 (555)
                      .+|..+.        .+++|+.+++++|.++..+.                             ..+..      ...++
T Consensus       255 ~lp~~l~--------~l~~L~~L~l~~N~l~~~~~-----------------------------~~~~~~~~~~~~~~l~  297 (332)
T 2ft3_A          255 RVPAGLP--------DLKLLQVVYLHTNNITKVGV-----------------------------NDFCPVGFGVKRAYYN  297 (332)
T ss_dssp             BCCTTGG--------GCTTCCEEECCSSCCCBCCT-----------------------------TSSSCSSCCSSSCCBS
T ss_pred             ecChhhh--------cCccCCEEECCCCCCCccCh-----------------------------hHcccccccccccccc
Confidence            4443322        23344444444444444333                             33222      24556


Q ss_pred             EEEccCCccc--cccCccccCCCCCcEEEccCcc
Q 040254          364 VLLLSGNQIT--GSIPGWFGNLPSLFYFALSQNN  395 (555)
Q Consensus       364 ~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~  395 (555)
                      .|++++|++.  +..+.+|..+++|+.+++++|+
T Consensus       298 ~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             EEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ceEeecCcccccccCcccccccchhhhhhccccc
Confidence            6666666655  3455556666666666666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.2e-29  Score=249.28  Aligned_cols=267  Identities=21%  Similarity=0.217  Sum_probs=122.5

Q ss_pred             CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254          155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM  234 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  234 (555)
                      .+++|++++|.++++.+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+. .+|..+.  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence            3444444444444433344444444444444444444433444444444444444444444 2222222  344455554


Q ss_pred             CccCccccCcccccCCCCCcEEEcccccccc--cccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEE
Q 040254          235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTG--SFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL  312 (555)
Q Consensus       235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L  312 (555)
                      +|.+. .++...+..+++|+.|++++|.++.  ..+..+..+ +|++|++++|++.+ +|..+.          ++|+.|
T Consensus       132 ~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~----------~~L~~L  198 (332)
T 2ft3_A          132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP----------ETLNEL  198 (332)
T ss_dssp             SSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC----------SSCSCC
T ss_pred             CCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc----------CCCCEE
Confidence            44444 2333334444445555554444432  223333333 55555555555442 221110          233333


Q ss_pred             EeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEcc
Q 040254          313 FLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS  392 (555)
Q Consensus       313 ~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  392 (555)
                      ++++|.++...+..+     ..+++|+.|++++|.+++..+.++..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus       199 ~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          199 HLDHNKIQAIELEDL-----LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             BCCSSCCCCCCTTSS-----TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             ECCCCcCCccCHHHh-----cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            333333333332222     33344444444444444433444444445555555555444 334444444445555555


Q ss_pred             CccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccC------
Q 040254          393 QNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ------  466 (555)
Q Consensus       393 ~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~------  466 (555)
                      +|+++                                                            +..+..|..      
T Consensus       273 ~N~l~------------------------------------------------------------~~~~~~~~~~~~~~~  292 (332)
T 2ft3_A          273 TNNIT------------------------------------------------------------KVGVNDFCPVGFGVK  292 (332)
T ss_dssp             SSCCC------------------------------------------------------------BCCTTSSSCSSCCSS
T ss_pred             CCCCC------------------------------------------------------------ccChhHccccccccc
Confidence            44444                                                            333333322      


Q ss_pred             CCCCCeeeCCCccce--eecchhhhCCccCCeeeCCCCC
Q 040254          467 LKFLNVLDLGNNNFA--GSIPNQISQLTILERLDLSKNH  503 (555)
Q Consensus       467 l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~Ls~N~  503 (555)
                      .+.|+.|++++|.+.  +..|..+..+++|+.+++++|+
T Consensus       293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            356778888888776  5667777788888888888774

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.1e-30  Score=253.88  Aligned_cols=271  Identities=20%  Similarity=0.275  Sum_probs=168.0

Q ss_pred             cCCCCceEecc--cCcceeeccC-ceeeeeccCCCCCccc--cCCccccCCCCCCEEEccC-CcCcCcCchhHHhcCCCC
Q 040254            5 PAAGGQIISCH--TEKSILRNHG-GFNILMQPAMNKLVQR--YHLPSIGNLTHISHLNLSH-NHVHGPLPINSFHFLTLL   78 (555)
Q Consensus         5 ~~~~~~~~~c~--~~~~~~~~~~-~~~~~~~~~~~~~i~~--~~~~~~~~l~~L~~L~L~~-n~~~~~i~~~~~~~l~~L   78 (555)
                      ..|.....+|.  |.++.|.... ...++.++++++.+++  .+|..|.++++|++|++++ |.+.+.+|. .|..+++|
T Consensus        25 ~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L  103 (313)
T 1ogq_A           25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQL  103 (313)
T ss_dssp             TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTC
T ss_pred             cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCC
Confidence            34555455676  8888886431 1356667777777777  6777777777777777774 666655554 35567777


Q ss_pred             CEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC-CCC
Q 040254           79 EIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA-SLE  157 (555)
Q Consensus        79 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~  157 (555)
                      ++|++++|++++..|..+..      +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..++ .|+
T Consensus       104 ~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A          104 HYLYITHTNVSGAIPDFLSQ------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             SEEEEEEECCEEECCGGGGG------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred             CEEECcCCeeCCcCCHHHhC------CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence            77777777776555554443      33677777777776666666666677777777776666656666666665 666


Q ss_pred             eeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCcc
Q 040254          158 EPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNL  237 (555)
Q Consensus       158 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~  237 (555)
                      +|++++|.+++..+..+..++ |++|++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.
T Consensus       178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred             EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence            666666666655666666665 66666666666656666666666666666666666533332 5555666666666666


Q ss_pred             CccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccce
Q 040254          238 FAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQ  286 (555)
Q Consensus       238 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  286 (555)
                      +.+.++ ..+..+++|+.|++++|.+++..+.. ..+++|+.+++++|+
T Consensus       256 l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          256 IYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CEECCC-GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ccCcCC-hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            554444 34555556666666666555444433 445555555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.1e-28  Score=242.37  Aligned_cols=246  Identities=20%  Similarity=0.286  Sum_probs=135.8

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR  131 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  131 (555)
                      ++++++++++.+. .+|...   .+.|++|++++|++++..+..+..      +++|++|++++|.+++..|..+.++++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKN------LKNLHTLILINNKISKISPGAFAPLVK  101 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTT------CTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhcc------CCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence            4555555555554 455322   245555555555555444433332      335556666655555544555555666


Q ss_pred             CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc--CCCcCccCCCCCCeeeC
Q 040254          132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG--SIPRDIGKLTNLKYLLL  209 (555)
Q Consensus       132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L  209 (555)
                      |++|++++|.+. .+|..+.  ++|++|++++|.++...+..+..+++|++|++++|.+..  ..+..+..+++|++|++
T Consensus       102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             CCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence            666666555443 2333332  456666666666665555555666666666666665532  44445556666666666


Q ss_pred             ccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecc
Q 040254          210 YRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG  289 (555)
Q Consensus       210 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  289 (555)
                      ++|.+. .+|..+.  ++|++|++++|.+.+ +....+..+++|+.|++++|.+++..+..+..+++|++|++++|++. 
T Consensus       179 ~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-  253 (330)
T 1xku_A          179 ADTNIT-TIPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-  253 (330)
T ss_dssp             CSSCCC-SCCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             CCCccc-cCCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence            666665 3333332  566666666666653 33345666666777777777666655556666777777777777666 


Q ss_pred             cCChhhhhcccccccCCCCCcEEEeccccCCCCC
Q 040254          290 QIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEAT  323 (555)
Q Consensus       290 ~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~  323 (555)
                      .+|..+        ..+++|+.+++++|.++..+
T Consensus       254 ~lp~~l--------~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          254 KVPGGL--------ADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             SCCTTT--------TTCSSCCEEECCSSCCCCCC
T ss_pred             cCChhh--------ccCCCcCEEECCCCcCCccC
Confidence            344332        22344455555555444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.6e-29  Score=243.37  Aligned_cols=290  Identities=22%  Similarity=0.252  Sum_probs=180.0

Q ss_pred             CCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeC
Q 040254          130 SRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLL  209 (555)
Q Consensus       130 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  209 (555)
                      .++++++++++.+. .+|..+.  +.+++|++++|.++++.+..|..+++|++|++++|.+.+..|..|..+++|++|++
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            36888888866544 4554442  57888888888888877777888888888888888887777777888888888888


Q ss_pred             ccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc--cccccccCCCCCcEEEccccee
Q 040254          210 YRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG--SFLLTLTSCRLLTALRLACNQL  287 (555)
Q Consensus       210 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~  287 (555)
                      ++|.++ .+|..+.  ++|++|++++|.+. .++...+..+++|+.|++++|.+..  ..+..+..+++|++|++++|.+
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            888877 4444433  57778888777776 4444556777777777777776643  3445556666666666666655


Q ss_pred             cccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEc
Q 040254          288 EGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLL  367 (555)
Q Consensus       288 ~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  367 (555)
                      .. +|..                                       .+++|++|++++|++++..+..+..+++|++|++
T Consensus       184 ~~-l~~~---------------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  223 (330)
T 1xku_A          184 TT-IPQG---------------------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL  223 (330)
T ss_dssp             CS-CCSS---------------------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             cc-CCcc---------------------------------------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            42 2211                                       1244555555555555444455555555555555


Q ss_pred             cCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCC
Q 040254          368 SGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRP  447 (555)
Q Consensus       368 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  447 (555)
                      ++|++++..+..+..+++|++|++++|+++ .+|..+..++.|.                                    
T Consensus       224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~------------------------------------  266 (330)
T 1xku_A          224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ------------------------------------  266 (330)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC------------------------------------
T ss_pred             CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcC------------------------------------
Confidence            555555444445555555555555555555 4444444443333                                    


Q ss_pred             EEEccCccccccCChhccC------CCCCCeeeCCCcccee--ecchhhhCCccCCeeeCCCCC
Q 040254          448 TIFLANNSLSGRIPAETGQ------LKFLNVLDLGNNNFAG--SIPNQISQLTILERLDLSKNH  503 (555)
Q Consensus       448 ~l~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~  503 (555)
                      .|++++|++++..+..|..      .+.++.|++++|.+..  ..|..+..+++++.++|++|+
T Consensus       267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            3555555555433333322      3667788888887753  456677778888888888874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.8e-28  Score=235.04  Aligned_cols=257  Identities=22%  Similarity=0.251  Sum_probs=206.0

Q ss_pred             CceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcC
Q 040254            9 GQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSL   88 (555)
Q Consensus         9 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i   88 (555)
                      ...|.|.+..+.|...+             + ..+|..+.  ++|++|++++|.+. .+|..+|..+++|++|++++|++
T Consensus         2 P~~C~C~~~~l~c~~~~-------------l-~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l   64 (306)
T 2z66_A            2 PSRCSCSGTEIRCNSKG-------------L-TSVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL   64 (306)
T ss_dssp             CTTCEEETTEEECCSSC-------------C-SSCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC
T ss_pred             cCCCeeCCCEEEcCCCC-------------c-ccCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCcc
Confidence            45677877666665542             2 34454443  68999999999998 89988899999999999999998


Q ss_pred             cccc--CCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeeccc
Q 040254           89 SGEL--TGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHFNK  165 (555)
Q Consensus        89 ~~~~--~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~n~  165 (555)
                      +...  +..+   .   .+++|++|++++|.++. ++..+.++++|++|++++|.+....+ ..+..+++|++|++++|.
T Consensus        65 ~~~~~~~~~~---~---~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  137 (306)
T 2z66_A           65 SFKGCCSQSD---F---GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  137 (306)
T ss_dssp             CEEEEEEHHH---H---SCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred             CcccCccccc---c---cccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence            7431  1111   1   45689999999999884 77778899999999999888766544 568888999999999999


Q ss_pred             CcccccccccCCCCCcEEEcccCcccc-CCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCc
Q 040254          166 LSGFISNDIINLTSLLVLELYSKELIG-SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSA  244 (555)
Q Consensus       166 i~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  244 (555)
                      +.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++.
T Consensus       138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~  216 (306)
T 2z66_A          138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDT  216 (306)
T ss_dssp             CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCS
T ss_pred             CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccCh
Confidence            988888888899999999999998876 57778888999999999999998777788888899999999999887 4554


Q ss_pred             ccccCCCCCcEEEcccccccccccccccCCC-CCcEEEcccceeccc
Q 040254          245 YNFSVLSQLETIDLYINMFTGSFLLTLTSCR-LLTALRLACNQLEGQ  290 (555)
Q Consensus       245 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~  290 (555)
                      ..+..+++|+.|++++|.+++..+..+..++ +|++|++++|++.+.
T Consensus       217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            5677888888888888888877777777774 888888888887754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1e-27  Score=237.66  Aligned_cols=287  Identities=19%  Similarity=0.150  Sum_probs=181.6

Q ss_pred             cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254           46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR  125 (555)
Q Consensus        46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  125 (555)
                      .-..|+.....+++++.++ .+|...+   ++|++|++++|++++..+..+.      .+++|++|++++|.+++..+.+
T Consensus        26 ~~~~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~   95 (353)
T 2z80_A           26 ASLSCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQ------RCVNLQALVLTSNGINTIEEDS   95 (353)
T ss_dssp             -CCEECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTT------TCTTCCEEECTTSCCCEECTTT
T ss_pred             cCCCCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhc------cCCCCCEEECCCCccCccCHhh
Confidence            3444566667788888777 6776433   4778888888877765554554      3447778888877777666667


Q ss_pred             ccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccccc-ccccCCCCCcEEEcccCc-cccCCCcCccCCCC
Q 040254          126 LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFIS-NDIINLTSLLVLELYSKE-LIGSIPRDIGKLTN  203 (555)
Q Consensus       126 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~  203 (555)
                      |.++++|++|++++|.+....+..+.++++|++|++++|.++.+.. ..+..+++|++|++++|. +....+..+..+++
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  175 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF  175 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence            7777777777777777665544456777777777777777776544 456667777777777663 44444455666666


Q ss_pred             CCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcc
Q 040254          204 LKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLA  283 (555)
Q Consensus       204 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  283 (555)
                      |++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++                       
T Consensus       176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~-----------------------  231 (353)
T 2z80_A          176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRD-----------------------  231 (353)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEES-----------------------
T ss_pred             CCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCC-----------------------
Confidence            666666666666555555555666666666655543 23322233344444444444                       


Q ss_pred             cceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccccc----ccchhhhCC
Q 040254          284 CNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTG----QVPLWLSKL  359 (555)
Q Consensus       284 ~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~----~~~~~l~~l  359 (555)
                       |.+.+..+..+...                                  ...+.++.++++++.+.+    .+|.++..+
T Consensus       232 -n~l~~~~~~~l~~~----------------------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l  276 (353)
T 2z80_A          232 -TDLDTFHFSELSTG----------------------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQI  276 (353)
T ss_dssp             -CBCTTCCCC----------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred             -Cccccccccccccc----------------------------------cccchhhccccccccccCcchhhhHHHHhcc
Confidence             44432221111110                                  112334445555544432    467888999


Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccc
Q 040254          360 TKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP  401 (555)
Q Consensus       360 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  401 (555)
                      ++|++|++++|+++...+..|..+++|++|++++|++.+..|
T Consensus       277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            999999999999995444446899999999999999986543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.4e-29  Score=269.36  Aligned_cols=408  Identities=14%  Similarity=0.101  Sum_probs=288.2

Q ss_pred             CCccccCCCCCCEEEccCCcCc---CcCc-----------hhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCC-C
Q 040254           43 HLPSIGNLTHISHLNLSHNHVH---GPLP-----------INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC-S  107 (555)
Q Consensus        43 ~~~~~~~l~~L~~L~L~~n~~~---~~i~-----------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~-~  107 (555)
                      .+..+..+++|++|+++++...   +.+|           ...+..+++|++|+|++|.+++..+..+...     ++ +
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~-----~~~~  139 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKA-----RADD  139 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH-----HGGG
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHh-----cccc
Confidence            3445678899999999875321   1121           2344479999999999998876544333331     22 4


Q ss_pred             ccEEEccCCcC-Cc-cCCccccCCCCCcEEEccCCCCCCC----CcHhhhcCCCCCeeEeecccCccc----ccccccCC
Q 040254          108 MRLLDFSYNDF-SS-QVPPRLGNCSRLKSFQAGYSNLLRS----LPDDIYAAASLEEPSLHFNKLSGF----ISNDIINL  177 (555)
Q Consensus       108 L~~L~ls~n~l-~~-~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l  177 (555)
                      |++|++++|.. .. .++....++++|++|++++|.+...    ++.....+++|++|++++|.++++    .+..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            99999999862 21 1233345789999999999876554    444566789999999999998733    23445688


Q ss_pred             CCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCc---ccCCccccCCCCCCEEECcCccCccccCcccccCCCCCc
Q 040254          178 TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS---GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLE  254 (555)
Q Consensus       178 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  254 (555)
                      ++|++|++++|.+.+ ++..+..+++|++|+++.....   ......+..+++|+.+.+.++... .++ ..+..+++|+
T Consensus       220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~-~~~~~~~~L~  296 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMP-ILFPFAAQIR  296 (592)
T ss_dssp             TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGG-GGGGGGGGCC
T ss_pred             CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHH-HHHhhcCCCc
Confidence            999999999998865 5677888999999999864322   233456778889999999876433 344 4567789999


Q ss_pred             EEEccccccccccc-ccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEecc-----------ccCCCC
Q 040254          255 TIDLYINMFTGSFL-LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM-----------NFMNEA  322 (555)
Q Consensus       255 ~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~-----------n~~~~~  322 (555)
                      +|++++|.+++... ..+..+++|++|+++ +.+.......+       ...|++|+.|+++.           +.++..
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~-------~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~  368 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL-------AQYCKQLKRLRIERGADEQGMEDEEGLVSQR  368 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH-------HHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH-------HHhCCCCCEEEeecCccccccccccCccCHH
Confidence            99999998765433 346789999999998 44332211111       24567899999993           444332


Q ss_pred             CCccccccccCCCCCccEEEccCcccccccchhhhC-CCCCcEEEcc----CCccccc-----cCccccCCCCCcEEEcc
Q 040254          323 TPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSK-LTKLEVLLLS----GNQITGS-----IPGWFGNLPSLFYFALS  392 (555)
Q Consensus       323 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~L~  392 (555)
                      ...    .+...+++|++|++..+.+++..+..+.. +++|++|+++    .|.+++.     ++..+..+++|++|+++
T Consensus       369 ~~~----~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~  444 (592)
T 3ogk_B          369 GLI----ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY  444 (592)
T ss_dssp             HHH----HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHH----HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence            111    12245789999999888888766666665 8999999996    5677643     33346678999999998


Q ss_pred             Ccc--Cccccchhhhc-cccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc-CChhccCCC
Q 040254          393 QNN--ISGEFPKELSR-LQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR-IPAETGQLK  468 (555)
Q Consensus       393 ~n~--l~~~~~~~~~~-l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~-~~~~~~~l~  468 (555)
                      +|.  +++..+..+.. ++.|.                                    .|++++|++++. ++..+.+++
T Consensus       445 ~~~~~l~~~~~~~~~~~~~~L~------------------------------------~L~L~~n~l~~~~~~~~~~~~~  488 (592)
T 3ogk_B          445 LRQGGLTDLGLSYIGQYSPNVR------------------------------------WMLLGYVGESDEGLMEFSRGCP  488 (592)
T ss_dssp             CCGGGCCHHHHHHHHHSCTTCC------------------------------------EEEECSCCSSHHHHHHHHTCCT
T ss_pred             cCCCCccHHHHHHHHHhCccce------------------------------------EeeccCCCCCHHHHHHHHhcCc
Confidence            654  55444433332 33343                                    588999998863 455568899


Q ss_pred             CCCeeeCCCccceee-cchhhhCCccCCeeeCCCCCCCC
Q 040254          469 FLNVLDLGNNNFAGS-IPNQISQLTILERLDLSKNHLSE  506 (555)
Q Consensus       469 ~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~  506 (555)
                      +|++|+|++|.+++. ++..+..+++|++|+|++|+++.
T Consensus       489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            999999999998755 44455679999999999999983

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=7.3e-27  Score=224.22  Aligned_cols=208  Identities=23%  Similarity=0.230  Sum_probs=160.1

Q ss_pred             CCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCc-CCccCCccccC
Q 040254           50 LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYND-FSSQVPPRLGN  128 (555)
Q Consensus        50 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~  128 (555)
                      .++|++|++++|.+. .++...|..+++|++|++++|.+++..+..+..      +++|++|++++|. ++...+..+..
T Consensus        31 ~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~~l~~~~~~~~~~  103 (285)
T 1ozn_A           31 PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTG------LALLEQLDLSDNAQLRSVDPATFHG  103 (285)
T ss_dssp             CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCC------ccCCCEEeCCCCCCccccCHHHhcC
Confidence            468889999999888 677777888888999999888888766666653      4488888888886 77655777888


Q ss_pred             CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeee
Q 040254          129 CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLL  208 (555)
Q Consensus       129 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  208 (555)
                      +++|++|++++|.+....+..+.++++|++|++++|.++.+.+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence            88888888888887777677777888888888888888877666777888888888888877766555677778888888


Q ss_pred             CccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254          209 LYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       209 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      +++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+..
T Consensus       184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCCCcccccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCccC
Confidence            8888877666777777777888888877776 3444556677777777777776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.8e-26  Score=233.30  Aligned_cols=236  Identities=21%  Similarity=0.196  Sum_probs=187.9

Q ss_pred             cCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc
Q 040254           42 YHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ  121 (555)
Q Consensus        42 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  121 (555)
                      .+|..+.  +++++|+|++|.+. .++...|..+++|++|+|++|++++..+..|..      +++|++|++++|.++..
T Consensus        68 ~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~  138 (452)
T 3zyi_A           68 EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG------LASLNTLELFDNWLTVI  138 (452)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSSCCSBC
T ss_pred             ccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccC------cccCCEEECCCCcCCcc
Confidence            3555553  58889999999888 676677888999999999999888777666654      44889999999988876


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeec-ccCcccccccccCCCCCcEEEcccCccccCCCcCccC
Q 040254          122 VPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF-NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGK  200 (555)
Q Consensus       122 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~  200 (555)
                      .+..|.++++|++|++++|.+....+..|.++++|++|++++ +.+..+.+..|.++++|++|++++|.+... | .+..
T Consensus       139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~  216 (452)
T 3zyi_A          139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP  216 (452)
T ss_dssp             CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTT
T ss_pred             ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccc
Confidence            666788888999999988887766666788888888888887 556666666788888888888888888643 3 4777


Q ss_pred             CCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEE
Q 040254          201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL  280 (555)
Q Consensus       201 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  280 (555)
                      +++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ +....|..+++|+.|++++|.+++.....+..+++|+.|
T Consensus       217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred             cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence            8888888888888887777888888888888888888873 444667888888888888888887777777888888888


Q ss_pred             Ecccceecc
Q 040254          281 RLACNQLEG  289 (555)
Q Consensus       281 ~l~~n~~~~  289 (555)
                      ++++|++..
T Consensus       296 ~L~~Np~~C  304 (452)
T 3zyi_A          296 HLHHNPWNC  304 (452)
T ss_dssp             ECCSSCEEC
T ss_pred             EccCCCcCC
Confidence            888887763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1e-26  Score=230.45  Aligned_cols=213  Identities=16%  Similarity=0.131  Sum_probs=172.3

Q ss_pred             CCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccC
Q 040254            6 AAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSY   85 (555)
Q Consensus         6 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   85 (555)
                      ++....+.|.+... |.           .++++++ .+|..+.  ++|++|++++|.+. .++...|..+++|++|++++
T Consensus        22 ~~~~~~~~C~~~~~-c~-----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~   85 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CK-----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTS   85 (353)
T ss_dssp             -----CCEECTTSE-EE-----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             CCCccCCCCCCCeE-ee-----------CCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCC
Confidence            34445566776654 32           3445555 4555554  58999999999998 78887899999999999999


Q ss_pred             CcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeecc
Q 040254           86 NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHFN  164 (555)
Q Consensus        86 n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~n  164 (555)
                      |++++..+..+..      +++|++|++++|.+++..+..+.++++|++|++++|.+....+ ..+.++++|++|++++|
T Consensus        86 n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A           86 NGINTIEEDSFSS------LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             SCCCEECTTTTTT------CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             CccCccCHhhcCC------CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence            9999877776654      4599999999999997555568999999999999988775433 37889999999999999


Q ss_pred             -cCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254          165 -KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG  240 (555)
Q Consensus       165 -~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  240 (555)
                       .++.+.+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+
T Consensus       160 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             ccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence             5787778889999999999999999998889999999999999999999974433345568999999999998873

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3e-26  Score=222.41  Aligned_cols=181  Identities=20%  Similarity=0.211  Sum_probs=106.0

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCC--CcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEE
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRS--LPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLE  184 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  184 (555)
                      +|++|++++|.++...+..|.++++|++|++++|.+...  .+..+..+++|++|++++|.++.+ +..+..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCEEE
Confidence            566666666666643334456666677777766655422  245566677777777777776653 34466777777777


Q ss_pred             cccCccccCCC-cCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccc
Q 040254          185 LYSKELIGSIP-RDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMF  263 (555)
Q Consensus       185 L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~  263 (555)
                      +++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+......+..+++|+.|++++|.+
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            77777665443 45666677777777777766555556666666666666666655322223444555555555555555


Q ss_pred             cccccccccCCCCCcEEEcccceec
Q 040254          264 TGSFLLTLTSCRLLTALRLACNQLE  288 (555)
Q Consensus       264 ~~~~~~~l~~~~~L~~L~l~~n~~~  288 (555)
                      ++..+..+..+++|++|++++|++.
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccC
Confidence            4444444444444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=8.3e-26  Score=230.69  Aligned_cols=235  Identities=24%  Similarity=0.224  Sum_probs=170.4

Q ss_pred             cCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc
Q 040254           42 YHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ  121 (555)
Q Consensus        42 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  121 (555)
                      .+|..+.  +++++|+|++|.+. .++...|.++++|++|+|++|+++...+..|.      .+++|++|++++|.++..
T Consensus        57 ~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~------~l~~L~~L~L~~n~l~~~  127 (440)
T 3zyj_A           57 EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN------GLANLNTLELFDNRLTTI  127 (440)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGT------TCSSCCEEECCSSCCSSC
T ss_pred             cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhcc------CCccCCEEECCCCcCCee
Confidence            4455443  57788888888877 56666777788888888888877766555544      344788888888887765


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeec-ccCcccccccccCCCCCcEEEcccCccccCCCcCccC
Q 040254          122 VPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF-NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGK  200 (555)
Q Consensus       122 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~  200 (555)
                      .+..|..+++|++|++++|.+....+..|.++++|++|++++ +.+..+.+..|.++++|++|++++|.+. .+| .+..
T Consensus       128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~  205 (440)
T 3zyj_A          128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTP  205 (440)
T ss_dssp             CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTT
T ss_pred             CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCC
Confidence            555677788888888887777666566677778888888877 4455555566777888888888887776 334 3667


Q ss_pred             CCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEE
Q 040254          201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL  280 (555)
Q Consensus       201 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  280 (555)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...|..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus       206 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred             CcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence            778888888888777666777777788888888888777 3444567777788888888887777666677777778888


Q ss_pred             Ecccceec
Q 040254          281 RLACNQLE  288 (555)
Q Consensus       281 ~l~~n~~~  288 (555)
                      ++++|.+.
T Consensus       285 ~L~~Np~~  292 (440)
T 3zyj_A          285 HLHHNPWN  292 (440)
T ss_dssp             ECCSSCEE
T ss_pred             EcCCCCcc
Confidence            88777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5e-26  Score=218.38  Aligned_cols=226  Identities=19%  Similarity=0.126  Sum_probs=177.3

Q ss_pred             CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCc
Q 040254           54 SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLK  133 (555)
Q Consensus        54 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~  133 (555)
                      ++++.+++.+. .+|...   .++|++|++++|++++..+..+.      .+++|++|++++|.+++..+.++.++++|+
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   83 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFR------ACRNLTILWLHSNVLARIDAAAFTGLALLE   83 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTT------TCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcc------cCCCCCEEECCCCccceeCHhhcCCccCCC
Confidence            67788888887 677542   46899999999998877666664      345899999999988877788888899999


Q ss_pred             EEEccCCC-CCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccC
Q 040254          134 SFQAGYSN-LLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRN  212 (555)
Q Consensus       134 ~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n  212 (555)
                      +|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus        84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A           84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence            99998886 55555777888888888888888888877777888888888888888887666666788888888888888


Q ss_pred             cCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceeccc
Q 040254          213 NLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQ  290 (555)
Q Consensus       213 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  290 (555)
                      .+++..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus       164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            8876655667788888888888888774333 5677778888888888888776666677778888888888777643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.9e-25  Score=226.69  Aligned_cols=229  Identities=21%  Similarity=0.239  Sum_probs=205.8

Q ss_pred             ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254           26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF  105 (555)
Q Consensus        26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  105 (555)
                      +..+..+++++|.|++..+..|.++++|++|+|++|.+. .++...|..+++|++|+|++|+++...+..|..      +
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l  135 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY------L  135 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS------C
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhc------c
Confidence            346788899999999999999999999999999999998 788889999999999999999999776666654      5


Q ss_pred             CCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeecccCcccccccccCCCCCcEEE
Q 040254          106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLE  184 (555)
Q Consensus       106 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  184 (555)
                      ++|++|++++|.++...+..|.++++|++|++++|+....++ ..|.++++|++|++++|.++.+.  .+..+++|++|+
T Consensus       136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~  213 (440)
T 3zyj_A          136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELD  213 (440)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEE
T ss_pred             ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEE
Confidence            599999999999998777789999999999999866655554 46889999999999999998753  588999999999


Q ss_pred             cccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccc
Q 040254          185 LYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT  264 (555)
Q Consensus       185 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~  264 (555)
                      +++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus       214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCcc
Confidence            9999999888999999999999999999999888889999999999999999998 666678899999999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.5e-25  Score=227.93  Aligned_cols=250  Identities=20%  Similarity=0.222  Sum_probs=215.1

Q ss_pred             CCCCceEecccC--cceeeccC--------ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcC
Q 040254            6 AAGGQIISCHTE--KSILRNHG--------GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFL   75 (555)
Q Consensus         6 ~~~~~~~~c~~~--~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l   75 (555)
                      .++...|.|.+.  .+.|...+        +..+..+++++|+|++..+..|.++++|++|+|++|.+. .++...|..+
T Consensus        44 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l  122 (452)
T 3zyi_A           44 QNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGL  122 (452)
T ss_dssp             CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTC
T ss_pred             CCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCc
Confidence            345555666542  22443332        346788999999999999999999999999999999998 6787889999


Q ss_pred             CCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcH-hhhcCC
Q 040254           76 TLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPD-DIYAAA  154 (555)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~  154 (555)
                      ++|++|+|++|+++...+..+..      +++|++|++++|.++...+..|.++++|++|++++|+..+.++. .|.+++
T Consensus       123 ~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  196 (452)
T 3zyi_A          123 ASLNTLELFDNWLTVIPSGAFEY------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF  196 (452)
T ss_dssp             TTCCEEECCSSCCSBCCTTTSSS------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred             ccCCEEECCCCcCCccChhhhcc------cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence            99999999999999777666654      55999999999999987777899999999999998666655554 688999


Q ss_pred             CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254          155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM  234 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  234 (555)
                      +|++|++++|.++++  ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus       197 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          197 NLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             TCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence            999999999999975  358899999999999999998889999999999999999999998888899999999999999


Q ss_pred             CccCccccCcccccCCCCCcEEEcccccccc
Q 040254          235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      +|.+. .++...+..+++|+.|++++|.+..
T Consensus       275 ~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          275 HNNLS-SLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             SSCCS-CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CCcCC-ccChHHhccccCCCEEEccCCCcCC
Confidence            99998 6666778899999999999998753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3.5e-25  Score=216.38  Aligned_cols=225  Identities=19%  Similarity=0.229  Sum_probs=164.8

Q ss_pred             CCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCC
Q 040254           50 LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNC  129 (555)
Q Consensus        50 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  129 (555)
                      .+++++|+|++|.+. .+|..++. +++|++|++++|.++ ..|..+.      .+++|++|++++|.++ .+|..+.++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~------~l~~L~~L~Ls~n~l~-~lp~~l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQ------QFAGLETLTLARNPLR-ALPASIASL  149 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGG------GGTTCSEEEEESCCCC-CCCGGGGGC
T ss_pred             ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHh------ccCCCCEEECCCCccc-cCcHHHhcC
Confidence            467888888888887 78876554 888888888888887 5555554      3448888888888888 578788888


Q ss_pred             CCCcEEEccCCCCCCCCcHhhhc---------CCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccC
Q 040254          130 SRLKSFQAGYSNLLRSLPDDIYA---------AASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGK  200 (555)
Q Consensus       130 ~~L~~L~L~~~~~~~~~~~~~~~---------l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~  200 (555)
                      ++|++|++++|+..+.+|..+..         +++|++|++++|.++. .|..+..+++|++|++++|.+.+ +|..+..
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~  227 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHH  227 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence            88888888887777777776654         7777777777777773 45567777777777777777763 4555777


Q ss_pred             CCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEE
Q 040254          201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL  280 (555)
Q Consensus       201 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  280 (555)
                      +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+..|..+..+++++.+
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            7777777777777776777777777777777777776665555 346667777777777777766677777777777777


Q ss_pred             Eccccee
Q 040254          281 RLACNQL  287 (555)
Q Consensus       281 ~l~~n~~  287 (555)
                      ++..+.+
T Consensus       307 ~l~~~~~  313 (328)
T 4fcg_A          307 LVPPHLQ  313 (328)
T ss_dssp             ECCGGGS
T ss_pred             eCCHHHH
Confidence            7665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=9.2e-26  Score=220.48  Aligned_cols=242  Identities=20%  Similarity=0.197  Sum_probs=207.5

Q ss_pred             eEecccCcceee-------ccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEc
Q 040254           11 IISCHTEKSILR-------NHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDL   83 (555)
Q Consensus        11 ~~~c~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   83 (555)
                      ...|.|.+..|.       ......++.++++++.++ .+|..+.++++|++|+|++|.+. .+|. .|..+++|++|++
T Consensus        58 ~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~~~~l~~L~~L~L  134 (328)
T 4fcg_A           58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TMQQFAGLETLTL  134 (328)
T ss_dssp             TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCS-CGGGGTTCSEEEE
T ss_pred             ccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhH-HHhccCCCCEEEC
Confidence            344556555443       122345778899999998 77888999999999999999999 8886 4677999999999


Q ss_pred             cCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccC---------CCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254           84 SYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGN---------CSRLKSFQAGYSNLLRSLPDDIYAAA  154 (555)
Q Consensus        84 s~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---------l~~L~~L~L~~~~~~~~~~~~~~~l~  154 (555)
                      ++|+++ ..|..+.      .+++|++|++++|++.+.+|..+..         +++|++|++++|.+. .+|..+.+++
T Consensus       135 s~n~l~-~lp~~l~------~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~  206 (328)
T 4fcg_A          135 ARNPLR-ALPASIA------SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ  206 (328)
T ss_dssp             ESCCCC-CCCGGGG------GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred             CCCccc-cCcHHHh------cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence            999998 4454443      4569999999999888778877654         999999999998877 7888999999


Q ss_pred             CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254          155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM  234 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  234 (555)
                      +|++|++++|.++++ +..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus       207 ~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          207 NLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             TCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred             CCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence            999999999999974 4569999999999999999999999999999999999999999988999999999999999999


Q ss_pred             CccCccccCcccccCCCCCcEEEcccccccc
Q 040254          235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      +|.+.+.+| ..+..+++++.+.+..+.+..
T Consensus       286 ~n~~~~~iP-~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          286 GCVNLSRLP-SLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             TCTTCCCCC-GGGGGSCTTCEEECCGGGSCC
T ss_pred             CCCchhhcc-HHHhhccCceEEeCCHHHHHH
Confidence            999988888 678999999999998776543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=2.3e-27  Score=252.30  Aligned_cols=400  Identities=14%  Similarity=0.059  Sum_probs=282.8

Q ss_pred             CCCCCCEEEccCCcCcCcCchhHHhcCCC-CCEEEccCCc-CccccCCCCccccccCCCCCccEEEccCCcCCcc----C
Q 040254           49 NLTHISHLNLSHNHVHGPLPINSFHFLTL-LEIIDLSYNS-LSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ----V  122 (555)
Q Consensus        49 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~-L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~  122 (555)
                      .+++|++|+|+++.+++..+..+...++. |++|++++|. ++.   ..++...  ..+++|++|++++|.+++.    +
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~---~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~l  184 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT---DGLLSIV--THCRKIKTLLMEESSFSEKDGKWL  184 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH---HHHHHHH--HHCTTCSEEECTTCEEECCCSHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH---HHHHHHH--hhCCCCCEEECccccccCcchhHH
Confidence            78999999999998875444333332455 9999999986 221   1122211  1467999999999988754    3


Q ss_pred             CccccCCCCCcEEEccCCCCC----CCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccc---cCCC
Q 040254          123 PPRLGNCSRLKSFQAGYSNLL----RSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELI---GSIP  195 (555)
Q Consensus       123 ~~~~~~l~~L~~L~L~~~~~~----~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~  195 (555)
                      +....++++|++|++++|.+.    ..++..+.++++|++|+++++.+.+ .+..+..+++|++|+++.....   ...+
T Consensus       185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred             HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH
Confidence            345678999999999988876    3445556788999999999999887 4577889999999999864322   2333


Q ss_pred             cCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCC
Q 040254          196 RDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCR  275 (555)
Q Consensus       196 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~  275 (555)
                      ..+..+++|+.|+++++... .++..+..+++|++|++++|.+.+......+..+++|+.|+++++............++
T Consensus       264 ~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~  342 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK  342 (592)
T ss_dssp             SCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred             HHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC
Confidence            45678899999999886544 56777888899999999999876433323467899999999994433323344446789


Q ss_pred             CCcEEEccc-----------ceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEcc
Q 040254          276 LLTALRLAC-----------NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLA  344 (555)
Q Consensus       276 ~L~~L~l~~-----------n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~  344 (555)
                      +|++|+++.           +.+++.....+       ...|++|+.|+++.+.+++.....    +...+++|+.|+++
T Consensus       343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-------~~~~~~L~~L~l~~~~l~~~~~~~----l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          343 QLKRLRIERGADEQGMEDEEGLVSQRGLIAL-------AQGCQELEYMAVYVSDITNESLES----IGTYLKNLCDFRLV  411 (592)
T ss_dssp             TCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-------HHHCTTCSEEEEEESCCCHHHHHH----HHHHCCSCCEEEEE
T ss_pred             CCCEEEeecCccccccccccCccCHHHHHHH-------HhhCccCeEEEeecCCccHHHHHH----HHhhCCCCcEEEEe
Confidence            999999993           44442211111       345789999999888886643322    22347899999996


Q ss_pred             ----Ccccccc-----cchhhhCCCCCcEEEccCCc--cccccCccc-cCCCCCcEEEccCccCccc-cchhhhccccch
Q 040254          345 ----GCQLTGQ-----VPLWLSKLTKLEVLLLSGNQ--ITGSIPGWF-GNLPSLFYFALSQNNISGE-FPKELSRLQPLV  411 (555)
Q Consensus       345 ----~n~i~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~  411 (555)
                          .+.+++.     ++..+..+++|++|++++|.  +++..+..+ ..+++|++|++++|++++. ++..+..++.|.
T Consensus       412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  491 (592)
T 3ogk_B          412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ  491 (592)
T ss_dssp             ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred             ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence                5667642     44457789999999998654  554444333 3489999999999999853 344445565555


Q ss_pred             hhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc-CChhccCCCCCCeeeCCCccceeecchhh-h
Q 040254          412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR-IPAETGQLKFLNVLDLGNNNFAGSIPNQI-S  489 (555)
Q Consensus       412 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~  489 (555)
                                                          .|++++|.++.. ++.....+++|++|+|++|++++.....+ .
T Consensus       492 ------------------------------------~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~  535 (592)
T 3ogk_B          492 ------------------------------------KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM  535 (592)
T ss_dssp             ------------------------------------EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG
T ss_pred             ------------------------------------eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH
Confidence                                                599999998754 34445678999999999999985533333 3


Q ss_pred             CCccCCeeeCCCC
Q 040254          490 QLTILERLDLSKN  502 (555)
Q Consensus       490 ~l~~L~~L~Ls~N  502 (555)
                      .++.+....+..+
T Consensus       536 ~~p~l~~~~~~~~  548 (592)
T 3ogk_B          536 ARPYWNIELIPSR  548 (592)
T ss_dssp             CCTTEEEEEECCC
T ss_pred             hCCCcEEEEecCc
Confidence            5666666555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=8.6e-28  Score=255.67  Aligned_cols=403  Identities=18%  Similarity=0.151  Sum_probs=247.7

Q ss_pred             cccCCCCCCEEEccCCcCcCcCc--------------hhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEE
Q 040254           46 SIGNLTHISHLNLSHNHVHGPLP--------------INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLL  111 (555)
Q Consensus        46 ~~~~l~~L~~L~L~~n~~~~~i~--------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L  111 (555)
                      .+..+++|++|+++++....++.              ...+..+++|++|++++|.+++..+..+..     .+++|++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~-----~~~~L~~L  135 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK-----SFKNFKVL  135 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH-----HCTTCCEE
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHH-----hCCCCcEE
Confidence            35667888888888875221111              233556888888888888877544333321     35588888


Q ss_pred             EccCC-cCCcc-CCccccCCCCCcEEEccCCCCCCCCcHhhh----cCCCCCeeEeeccc--Cccc-ccccccCCCCCcE
Q 040254          112 DFSYN-DFSSQ-VPPRLGNCSRLKSFQAGYSNLLRSLPDDIY----AAASLEEPSLHFNK--LSGF-ISNDIINLTSLLV  182 (555)
Q Consensus       112 ~ls~n-~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~----~l~~L~~L~l~~n~--i~~~-~~~~~~~l~~L~~  182 (555)
                      ++++| .++.. ++..+.++++|++|++++|.+....+..+.    .+++|++|+++++.  +... ....+..+++|++
T Consensus       136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~  215 (594)
T 2p1m_B          136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS  215 (594)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCE
T ss_pred             eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcE
Confidence            88888 44432 344455788888888888775554443333    55688888888876  2211 1122345688888


Q ss_pred             EEcccCccccCCCcCccCCCCCCeeeCccCc-------CcccCCccccCCCCCCEE-ECcCccCccccCcccccCCCCCc
Q 040254          183 LELYSKELIGSIPRDIGKLTNLKYLLLYRNN-------LSGSLPSSMMNCTNLKTL-NLMGNLFAGNLSAYNFSVLSQLE  254 (555)
Q Consensus       183 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~~~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~  254 (555)
                      |++++|.....++..+..+++|++|++..+.       +. .++..+..+++|+.+ .+..... ..++ ..+..+++|+
T Consensus       216 L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~-~~~~~~~~L~  292 (594)
T 2p1m_B          216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLP-AVYSVCSRLT  292 (594)
T ss_dssp             EECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGG-GGHHHHTTCC
T ss_pred             EecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHH-HHHHhhCCCC
Confidence            8888874333355566677888888865543       22 233356777888887 3333221 1222 2334567888


Q ss_pred             EEEccccccccccc-ccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEecc---------ccCCCCCC
Q 040254          255 TIDLYINMFTGSFL-LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM---------NFMNEATP  324 (555)
Q Consensus       255 ~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~---------n~~~~~~~  324 (555)
                      +|++++|.+++... ..+..+++|++|+++++ +....   +..+    ...+++|+.|++.+         +.++... 
T Consensus       293 ~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~---l~~l----~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~-  363 (594)
T 2p1m_B          293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAG---LEVL----ASTCKDLRELRVFPSEPFVMEPNVALTEQG-  363 (594)
T ss_dssp             EEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHH---HHHH----HHHCTTCCEEEEECSCTTCSSCSSCCCHHH-
T ss_pred             EEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHH---HHHH----HHhCCCCCEEEEecCcccccccCCCCCHHH-
Confidence            88888887664332 23457788888888877 33111   1111    22366788888743         2222211 


Q ss_pred             ccccccccCCCCCccEEEccCcccccccchhhh-CCCCCcEEEcc--C----Cccccc-----cCccccCCCCCcEEEcc
Q 040254          325 NYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS-KLTKLEVLLLS--G----NQITGS-----IPGWFGNLPSLFYFALS  392 (555)
Q Consensus       325 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~L~  392 (555)
                         ...+...+++|+.|.+..+.+++.....+. .+++|++|+++  +    +.+++.     ++..+..+++|++|+++
T Consensus       364 ---l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~  440 (594)
T 2p1m_B          364 ---LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS  440 (594)
T ss_dssp             ---HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred             ---HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence               111223467888888777777755554454 57888888888  3    445421     11225667888888887


Q ss_pred             CccCccccchhhhc-cccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhc-cCCCCC
Q 040254          393 QNNISGEFPKELSR-LQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET-GQLKFL  470 (555)
Q Consensus       393 ~n~l~~~~~~~~~~-l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~-~~l~~L  470 (555)
                      + .+++..+..+.. ++.|.                                    .|++++|.+++..+..+ .++++|
T Consensus       441 ~-~l~~~~~~~l~~~~~~L~------------------------------------~L~L~~~~i~~~~~~~l~~~~~~L  483 (594)
T 2p1m_B          441 G-LLTDKVFEYIGTYAKKME------------------------------------MLSVAFAGDSDLGMHHVLSGCDSL  483 (594)
T ss_dssp             S-SCCHHHHHHHHHHCTTCC------------------------------------EEEEESCCSSHHHHHHHHHHCTTC
T ss_pred             C-cccHHHHHHHHHhchhcc------------------------------------EeeccCCCCcHHHHHHHHhcCCCc
Confidence            7 555444444333 33443                                    58888888765544444 667888


Q ss_pred             CeeeCCCccceeecch-hhhCCccCCeeeCCCCCCC
Q 040254          471 NVLDLGNNNFAGSIPN-QISQLTILERLDLSKNHLS  505 (555)
Q Consensus       471 ~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~  505 (555)
                      ++|+|++|.+++.... .+..+++|++|++++|+++
T Consensus       484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            8888888888654443 3445788888888888886

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.7e-23  Score=218.32  Aligned_cols=270  Identities=21%  Similarity=0.188  Sum_probs=157.1

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR  131 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  131 (555)
                      ++++|++++|.++ .+|..++   ++|++|++++|+|+....          .+++|++|++++|.+++ +|.   .+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~~-lp~---~l~~  102 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----------LPPELRTLEVSGNQLTS-LPV---LPPG  102 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----------CCTTCCEEEECSCCCSC-CCC---CCTT
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----------cCCCCCEEEcCCCcCCc-CCC---CCCC
Confidence            4566666666666 5665432   566666666666653221          12356666666666653 333   4555


Q ss_pred             CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254          132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR  211 (555)
Q Consensus       132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  211 (555)
                      |++|++++|.+.. +|.   .+++|++|++++|.++.+..    .+++|++|++++|.+.+ +|.   .+++|+.|++++
T Consensus       103 L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~  170 (622)
T 3g06_A          103 LLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYN  170 (622)
T ss_dssp             CCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             CCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCC
Confidence            6666666554433 222   34455555555555554321    12445555555554432 221   123444444444


Q ss_pred             CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccC
Q 040254          212 NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQI  291 (555)
Q Consensus       212 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  291 (555)
                      |.++.                         ++    ..+++|+.|++++|.+++...    ..++|+.|++++|.+. .+
T Consensus       171 N~l~~-------------------------l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l  216 (622)
T 3g06_A          171 NQLTS-------------------------LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SL  216 (622)
T ss_dssp             SCCSC-------------------------CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SC
T ss_pred             CCCCC-------------------------Cc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-cc
Confidence            44442                         22    223445555555554443211    1245555555555554 22


Q ss_pred             ChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCc
Q 040254          292 PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQ  371 (555)
Q Consensus       292 ~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~  371 (555)
                      |.           ..++|+.|++++|.++..+         ..+++|+.|++++|+++ .+|.   .+++|+.|++++|+
T Consensus       217 ~~-----------~~~~L~~L~Ls~N~L~~lp---------~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          217 PA-----------LPSGLKELIVSGNRLTSLP---------VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             CC-----------CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred             CC-----------CCCCCCEEEccCCccCcCC---------CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCC
Confidence            21           1245666666666666543         33578899999999888 4554   66889999999999


Q ss_pred             cccccCccccCCCCCcEEEccCccCccccchhhhccccc
Q 040254          372 ITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPL  410 (555)
Q Consensus       372 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  410 (555)
                      ++ .+|..+..+++|+.|+|++|++++..|..+..++..
T Consensus       273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~  310 (622)
T 3g06_A          273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA  310 (622)
T ss_dssp             CC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred             CC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence            99 778889999999999999999998888877776643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.7e-23  Score=219.88  Aligned_cols=269  Identities=23%  Similarity=0.296  Sum_probs=148.0

Q ss_pred             CCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCC
Q 040254           76 TLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAAS  155 (555)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~  155 (555)
                      ..+++|++++|.++ ..|..++        ++|++|++++|.++. +|.   .+++|++|++++|               
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--------~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N---------------   91 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--------AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGN---------------   91 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--------TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSC---------------
T ss_pred             CCCcEEEecCCCcC-ccChhhC--------CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCC---------------
Confidence            34666666666666 2233332        256666666666553 333   2344444444444               


Q ss_pred             CCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcC
Q 040254          156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG  235 (555)
Q Consensus       156 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  235 (555)
                               .++.+..    .+++|++|++++|.+.. +|.   .+++|+.|++++|.++. +|..   +++|++|++++
T Consensus        92 ---------~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~  150 (622)
T 3g06_A           92 ---------QLTSLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSD  150 (622)
T ss_dssp             ---------CCSCCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred             ---------cCCcCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcC
Confidence                     4433221    33445555555554432 222   34556666666666552 3332   25666666666


Q ss_pred             ccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEec
Q 040254          236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLT  315 (555)
Q Consensus       236 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~  315 (555)
                      |.+. .++.    .+.+|+.|++++|.++...    ..+++|+.|++++|.+.                           
T Consensus       151 N~l~-~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~---------------------------  194 (622)
T 3g06_A          151 NQLA-SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLA---------------------------  194 (622)
T ss_dssp             SCCS-CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS---------------------------
T ss_pred             CcCC-CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCC---------------------------
Confidence            6655 2321    2356666666666665422    23455555555555544                           


Q ss_pred             cccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCcc
Q 040254          316 MNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN  395 (555)
Q Consensus       316 ~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  395 (555)
                           ..+         ..+++|+.|++++|.++ .+|.   .+++|++|++++|++++ +|   ..+++|++|++++|+
T Consensus       195 -----~l~---------~~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          195 -----SLP---------TLPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR  252 (622)
T ss_dssp             -----CCC---------CCCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred             -----CCC---------CccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence                 221         12345666666666665 3332   23567777777777763 44   345677777777777


Q ss_pred             CccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeC
Q 040254          396 ISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDL  475 (555)
Q Consensus       396 l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~L  475 (555)
                      ++ .+|.   .+..|.                                    .|++++|+++ .+|..+.++++|+.|+|
T Consensus       253 L~-~lp~---~~~~L~------------------------------------~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          253 LT-SLPM---LPSGLL------------------------------------SLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             CS-CCCC---CCTTCC------------------------------------EEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CC-cCCc---ccccCc------------------------------------EEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            76 3333   222222                                    4667777776 56667777777888888


Q ss_pred             CCccceeecchhhhCCc
Q 040254          476 GNNNFAGSIPNQISQLT  492 (555)
Q Consensus       476 s~N~l~~~~~~~l~~l~  492 (555)
                      ++|.+++.+|..+..++
T Consensus       292 ~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          292 EGNPLSERTLQALREIT  308 (622)
T ss_dssp             CSCCCCHHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHhcc
Confidence            88888777777666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1e-25  Score=219.45  Aligned_cols=258  Identities=19%  Similarity=0.114  Sum_probs=168.2

Q ss_pred             eeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCcc
Q 040254          158 EPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNL  237 (555)
Q Consensus       158 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~  237 (555)
                      ..+++.+.+.......+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            34444444444333444455566666666666655555556666666666666666653322  5555666666666665


Q ss_pred             CccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccc
Q 040254          238 FAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN  317 (555)
Q Consensus       238 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n  317 (555)
                      +.+ ++     ..++|++|++++|.+++..+..   +++                                |+.|++++|
T Consensus        92 l~~-l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~--------------------------------L~~L~l~~N  130 (317)
T 3o53_A           92 VQE-LL-----VGPSIETLHAANNNISRVSCSR---GQG--------------------------------KKNIYLANN  130 (317)
T ss_dssp             EEE-EE-----ECTTCCEEECCSSCCSEEEECC---CSS--------------------------------CEEEECCSS
T ss_pred             ccc-cc-----CCCCcCEEECCCCccCCcCccc---cCC--------------------------------CCEEECCCC
Confidence            541 11     2245555555555554332221   234                                444444444


Q ss_pred             cCCCCCCccccccccCCCCCccEEEccCcccccccchhh-hCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccC
Q 040254          318 FMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL-SKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNI  396 (555)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  396 (555)
                      .++...+..+     ..+++|++|++++|.+++..+..+ ..+++|++|++++|++++. + ....+++|++|++++|++
T Consensus       131 ~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          131 KITMLRDLDE-----GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             CCCSGGGBCT-----GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCC
T ss_pred             CCCCccchhh-----hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcC
Confidence            4444333222     456788888888888886666665 4688999999999998855 3 233588999999999999


Q ss_pred             ccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCC
Q 040254          397 SGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLG  476 (555)
Q Consensus       397 ~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls  476 (555)
                      ++ +|..+..++.|.                                    .|++++|+++ .+|..+..+++|++|+++
T Consensus       204 ~~-l~~~~~~l~~L~------------------------------------~L~L~~N~l~-~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          204 AF-MGPEFQSAAGVT------------------------------------WISLRNNKLV-LIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             CE-ECGGGGGGTTCS------------------------------------EEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred             Cc-chhhhcccCccc------------------------------------EEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence            84 444576766666                                    5899999988 567778889999999999


Q ss_pred             Cccce-eecchhhhCCccCCeeeCCCCC
Q 040254          477 NNNFA-GSIPNQISQLTILERLDLSKNH  503 (555)
Q Consensus       477 ~N~l~-~~~~~~l~~l~~L~~L~Ls~N~  503 (555)
                      +|.++ +.+|..+..+++|+.|++++|+
T Consensus       246 ~N~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          246 GNGFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             TCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCccCcCHHHHHhccccceEEECCCch
Confidence            99998 7788888999999999998654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.9e-27  Score=251.60  Aligned_cols=400  Identities=15%  Similarity=0.125  Sum_probs=267.5

Q ss_pred             ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCC-cCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254           47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN-SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR  125 (555)
Q Consensus        47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  125 (555)
                      ...+++|++|+|+++.+++..+..+...+++|++|++++| .+++..   ++...  ..+++|++|++++|.+++..+..
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~---l~~~~--~~~~~L~~L~L~~~~i~~~~~~~  175 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG---LAAIA--ATCRNLKELDLRESDVDDVSGHW  175 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH---HHHHH--HHCTTCCEEECTTCEEECCCGGG
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH---HHHHH--HhCCCCCEEeCcCCccCCcchHH
Confidence            3468899999999998875555444446999999999998 444321   12211  14669999999999877543333


Q ss_pred             ----ccCCCCCcEEEccCCC--CC-CCCcHhhhcCCCCCeeEeecc-cCcccccccccCCCCCcEEEcccCc-------c
Q 040254          126 ----LGNCSRLKSFQAGYSN--LL-RSLPDDIYAAASLEEPSLHFN-KLSGFISNDIINLTSLLVLELYSKE-------L  190 (555)
Q Consensus       126 ----~~~l~~L~~L~L~~~~--~~-~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-------~  190 (555)
                          ...+++|++|+++++.  +. ..++..+..+++|++|++++| .+.+ .+..+..+++|++|++..+.       +
T Consensus       176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~  254 (594)
T 2p1m_B          176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVY  254 (594)
T ss_dssp             GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred             HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhH
Confidence                3477899999999876  11 112222345799999999988 4443 56677889999999976553       2


Q ss_pred             ccCCCcCccCCCCCCee-eCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccc
Q 040254          191 IGSIPRDIGKLTNLKYL-LLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLL  269 (555)
Q Consensus       191 ~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  269 (555)
                      .+ ++..+..+++|+.+ .+...... .++..+..+++|++|++++|.+.+......+..+++|++|++++| +.+....
T Consensus       255 ~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~  331 (594)
T 2p1m_B          255 SG-LSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE  331 (594)
T ss_dssp             HH-HHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred             HH-HHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence            21 23356788899988 44433322 344445567899999999998664333334567899999999988 4433222


Q ss_pred             -cccCCCCCcEEEccc---------ceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCcc
Q 040254          270 -TLTSCRLLTALRLAC---------NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLR  339 (555)
Q Consensus       270 -~l~~~~~L~~L~l~~---------n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~  339 (555)
                       ....+++|++|++..         +.+++.....+       ...+++|+.|.+..+.++......    +...+++|+
T Consensus       332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l-------~~~~~~L~~L~~~~~~l~~~~~~~----l~~~~~~L~  400 (594)
T 2p1m_B          332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-------SMGCPKLESVLYFCRQMTNAALIT----IARNRPNMT  400 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH-------HHHCTTCCEEEEEESCCCHHHHHH----HHHHCTTCC
T ss_pred             HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH-------HHhchhHHHHHHhcCCcCHHHHHH----HHhhCCCcc
Confidence             233589999999844         33332111111       124678999988888776543222    223578999


Q ss_pred             EEEcc--C----ccccc-----ccchhhhCCCCCcEEEccCCccccccCccccC-CCCCcEEEccCccCccccchhh-hc
Q 040254          340 AVSLA--G----CQLTG-----QVPLWLSKLTKLEVLLLSGNQITGSIPGWFGN-LPSLFYFALSQNNISGEFPKEL-SR  406 (555)
Q Consensus       340 ~L~l~--~----n~i~~-----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~  406 (555)
                      .|+++  +    +.++.     .++..+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..
T Consensus       401 ~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~  479 (594)
T 2p1m_B          401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG  479 (594)
T ss_dssp             EEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHH
T ss_pred             eeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhc
Confidence            99998  3    45542     2233467889999999987 666554445544 8899999999999876544444 44


Q ss_pred             cccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCCh-hccCCCCCCeeeCCCccceeecc
Q 040254          407 LQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPA-ETGQLKFLNVLDLGNNNFAGSIP  485 (555)
Q Consensus       407 l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~  485 (555)
                      ++.|.                                    .|++++|.++..... ....+++|++|++++|+++....
T Consensus       480 ~~~L~------------------------------------~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  523 (594)
T 2p1m_B          480 CDSLR------------------------------------KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGAC  523 (594)
T ss_dssp             CTTCC------------------------------------EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHH
T ss_pred             CCCcC------------------------------------EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHH
Confidence            55554                                    588899988654433 34568999999999999965444


Q ss_pred             hhh-hCCccCCeeeCCCCC
Q 040254          486 NQI-SQLTILERLDLSKNH  503 (555)
Q Consensus       486 ~~l-~~l~~L~~L~Ls~N~  503 (555)
                      ..+ ..++.|+...+..+.
T Consensus       524 ~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          524 KLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             HHHHHHCTTEEEEEECSSS
T ss_pred             HHHHHhCCCCEEEEecCCC
Confidence            444 457777776666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=7.8e-26  Score=219.78  Aligned_cols=234  Identities=15%  Similarity=0.135  Sum_probs=141.9

Q ss_pred             cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccc-cCCCCc-cccccCCCCCccEEEccCCcCCccCC
Q 040254           46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-LTGLIP-SLAWNHSFCSMRLLDFSYNDFSSQVP  123 (555)
Q Consensus        46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~  123 (555)
                      .+...++|++|++++|.+  .+|...+..   |++|++++|++... .+..+. .......+++|++|++++|.+++.+|
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            355667788888888888  577765553   88888888887532 211111 00000025578888888888876666


Q ss_pred             ccc--cCCCCCcEEEccCCCCCCCCcHhhhcC-----CCCCeeEeecccCcccccccccCCCCCcEEEcccCccccC--C
Q 040254          124 PRL--GNCSRLKSFQAGYSNLLRSLPDDIYAA-----ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGS--I  194 (555)
Q Consensus       124 ~~~--~~l~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~--~  194 (555)
                      ..+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|++++..+..|..+++|++|++++|.+.+.  .
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  191 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL  191 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence            655  7788888888887777665 6666655     7777777777777776667777777777777777765443  1


Q ss_pred             CcCc--cCCCCCCeeeCccCcCccc---CCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccc
Q 040254          195 PRDI--GKLTNLKYLLLYRNNLSGS---LPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLL  269 (555)
Q Consensus       195 ~~~l--~~l~~L~~L~L~~n~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  269 (555)
                      +..+  ..+++|++|++++|.+++.   ....+..+++|++|++++|.+.+..+...+..+++|+.|++++|.++. .+.
T Consensus       192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~  270 (312)
T 1wwl_A          192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPK  270 (312)
T ss_dssp             HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCS
T ss_pred             HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhh
Confidence            2222  5666777777777766521   112234556666666666666543332334445556666666655552 222


Q ss_pred             cccCCCCCcEEEcccceec
Q 040254          270 TLTSCRLLTALRLACNQLE  288 (555)
Q Consensus       270 ~l~~~~~L~~L~l~~n~~~  288 (555)
                      .+.  ++|++|++++|+++
T Consensus       271 ~~~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          271 GLP--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             SCC--SEEEEEECCSSCCC
T ss_pred             hcc--CCceEEECCCCCCC
Confidence            222  45555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=8.6e-26  Score=219.46  Aligned_cols=60  Identities=32%  Similarity=0.321  Sum_probs=43.2

Q ss_pred             CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCcc
Q 040254          334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG  398 (555)
Q Consensus       334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  398 (555)
                      .+++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            3466777777777776 5555554  6788888888888754 54 7778888888888888764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=8e-25  Score=213.15  Aligned_cols=252  Identities=18%  Similarity=0.157  Sum_probs=149.0

Q ss_pred             ccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc
Q 040254          108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS  187 (555)
Q Consensus       108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~  187 (555)
                      ++..+++.+.+.......+..+++|++|++++|.+....+..+.++++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4445555555543333444455666666666666666555666666666666666666655432  56666666666666


Q ss_pred             CccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccc
Q 040254          188 KELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF  267 (555)
Q Consensus       188 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  267 (555)
                      |.+.+..     ..++|++|++++|.+.+..+.   .+++|++|++++|.+. .++...+..+++|+.|++++|.+++..
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCccc
Confidence            6654221     225666666666665533222   2345556666555555 232234444555555555555555443


Q ss_pred             ccccc-CCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254          268 LLTLT-SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC  346 (555)
Q Consensus       268 ~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  346 (555)
                      +..+. .+++|++|++++|.+.                                .....       ..+++|++|++++|
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~--------------------------------~~~~~-------~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIY--------------------------------DVKGQ-------VVFAKLKTLDLSSN  201 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCC--------------------------------EEECC-------CCCTTCCEEECCSS
T ss_pred             HHHHhhccCcCCEEECCCCcCc--------------------------------ccccc-------cccccCCEEECCCC
Confidence            33332 3455555555555443                                32111       23677888888888


Q ss_pred             ccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc-cccchhhhccccch
Q 040254          347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS-GEFPKELSRLQPLV  411 (555)
Q Consensus       347 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  411 (555)
                      ++++ ++..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.++..+..+..|.
T Consensus       202 ~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          202 KLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             CCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             cCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence            8874 4445778888888888888888 56677888888889999888887 55555555444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=7e-23  Score=194.58  Aligned_cols=198  Identities=24%  Similarity=0.253  Sum_probs=140.0

Q ss_pred             ccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEE
Q 040254           32 QPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLL  111 (555)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L  111 (555)
                      ++++++.++. +|..+.  +++++|++++|.+. .++...|..+++|++|++++|+++...+..|.      .+++|++|
T Consensus        21 l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~------~l~~L~~L   90 (270)
T 2o6q_A           21 VDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK------ELKNLETL   90 (270)
T ss_dssp             EECTTSCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS------SCTTCCEE
T ss_pred             EEccCCCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhc------CCCCCCEE
Confidence            4445566653 555443  57888888888887 67766777888888888888888765554443      34478888


Q ss_pred             EccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccc
Q 040254          112 DFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELI  191 (555)
Q Consensus       112 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~  191 (555)
                      ++++|.+++..+..+.++++|++|++++|.+....+..|..+++|++|++++|.++.+.+..|..+++|++|++++|.+.
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            88888887655566777788888888877776666666777777777777777777766666777777777777777776


Q ss_pred             cCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCc
Q 040254          192 GSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA  239 (555)
Q Consensus       192 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  239 (555)
                      ...+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            665556677777777777777776554455666677777777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=4e-23  Score=197.11  Aligned_cols=206  Identities=24%  Similarity=0.209  Sum_probs=147.3

Q ss_pred             CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCC
Q 040254           51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCS  130 (555)
Q Consensus        51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  130 (555)
                      ++|++|++++|.+. .++...|..+++|++|++++|++++..+..+..      +++|++|++++|.+++..+..+.+++
T Consensus        28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS------LSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTT------CTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccC------CcCCCEEECCCCccCccChhhhcCCc
Confidence            46778888888777 566666777788888888888777665555543      44788888888877766667777788


Q ss_pred             CCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccc-cccccCCCCCcEEEcccCccccCCCcCccCCCCCC----
Q 040254          131 RLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI-SNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK----  205 (555)
Q Consensus       131 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~----  205 (555)
                      +|++|++++|.+....+..+.++++|++|++++|.++... +..+..+++|++|++++|.+.+..+..+..+++|+    
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l  180 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred             cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence            8888888777766655556777778888888888777643 66777788888888888877766555665555555    


Q ss_pred             eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254          206 YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       206 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      .|++++|.+.+..+..+ ...+|++|++++|.+. .++...+..+++|+.|++++|.+..
T Consensus       181 ~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          181 SLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             EEECCSSCCCEECTTSS-CSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             eeecCCCcccccCcccc-CCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccc
Confidence            77888888775444433 3347888888888777 4555567778888888888887763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=9.6e-23  Score=194.46  Aligned_cols=226  Identities=18%  Similarity=0.125  Sum_probs=181.6

Q ss_pred             EEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcE
Q 040254           55 HLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKS  134 (555)
Q Consensus        55 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  134 (555)
                      .++..+..+. .+|...   .++|++|++++|++++..+..+.      .+++|++|++++|.+++..+.++.++++|++
T Consensus        11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFF------SFPELQVLDLSRCEIQTIEDGAYQSLSHLST   80 (276)
T ss_dssp             EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTT------TCTTCSEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhc------cccCCcEEECCCCcCCccCHHHccCCcCCCE
Confidence            4556666666 677643   25799999999999877665654      3558999999999998777778899999999


Q ss_pred             EEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccC-CCcCccCCCCCCeeeCccCc
Q 040254          135 FQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGS-IPRDIGKLTNLKYLLLYRNN  213 (555)
Q Consensus       135 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~  213 (555)
                      |++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+... +|..+..+++|++|++++|.
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A           81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             EECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            99999988877778888999999999999999887777789999999999999998764 57888889999999999999


Q ss_pred             CcccCCccccCCCCCC----EEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecc
Q 040254          214 LSGSLPSSMMNCTNLK----TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG  289 (555)
Q Consensus       214 l~~~~~~~l~~~~~L~----~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  289 (555)
                      +++..+..+..+++|+    +|++++|.+. .++...+.. .+|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus       161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCcCCHHHhhhhhhccccceeeecCCCccc-ccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            9876666666666666    8899999887 444344443 479999999999887777777888899999999998875


Q ss_pred             cCC
Q 040254          290 QIP  292 (555)
Q Consensus       290 ~~~  292 (555)
                      ..+
T Consensus       239 ~c~  241 (276)
T 2z62_A          239 SCP  241 (276)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.4e-23  Score=216.19  Aligned_cols=128  Identities=20%  Similarity=0.090  Sum_probs=75.6

Q ss_pred             CCCCCccEEEccCcccccccchhhh-CCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccch
Q 040254          333 DGFQNLRAVSLAGCQLTGQVPLWLS-KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLV  411 (555)
Q Consensus       333 ~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  411 (555)
                      ..+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..+  ...+++|++|+|++|.+++.. ..+..+..|.
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~  217 (487)
T 3oja_A          141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVT  217 (487)
T ss_dssp             GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCS
T ss_pred             cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC-HhHcCCCCcc
Confidence            3345666666666666655555554 56667777777776664422  234666777777776666433 3354544444


Q ss_pred             hhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccce-eecchhhhC
Q 040254          412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFA-GSIPNQISQ  490 (555)
Q Consensus       412 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~  490 (555)
                                                          .|++++|.+++ +|..+..+++|+.|++++|.++ +.+|..+..
T Consensus       218 ------------------------------------~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~  260 (487)
T 3oja_A          218 ------------------------------------WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (487)
T ss_dssp             ------------------------------------EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred             ------------------------------------EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence                                                36666666663 4555666666666666666665 455555666


Q ss_pred             CccCCeeeCC
Q 040254          491 LTILERLDLS  500 (555)
Q Consensus       491 l~~L~~L~Ls  500 (555)
                      ++.|+.++++
T Consensus       261 l~~L~~l~~~  270 (487)
T 3oja_A          261 NQRVQTVAKQ  270 (487)
T ss_dssp             CHHHHHHHHH
T ss_pred             CCCCcEEecc
Confidence            6666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=6e-22  Score=188.14  Aligned_cols=200  Identities=24%  Similarity=0.218  Sum_probs=104.7

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR  131 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  131 (555)
                      ..++++++++.+. .+|...   .++|++|++++|+++...+..|..      +++|++|++++|.++...+..|.++++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~i~~~~~~~l~~   86 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHR------LTKLRLLYLNDNKLQTLPAGIFKELKN   86 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSS------CTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred             CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcC------CCCCCEEECCCCccCeeChhhhcCCCC
Confidence            3566777777666 566432   245666666666666544444432      336666666666666444444555666


Q ss_pred             CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254          132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR  211 (555)
Q Consensus       132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  211 (555)
                      |++|++++|.+....+..+..+++|++|++++|.++.+.+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence            66666665555544444445555555555555555555444555555555555555555444333445555555555555


Q ss_pred             CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccc
Q 040254          212 NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM  262 (555)
Q Consensus       212 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  262 (555)
                      |.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          167 NQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC
Confidence            5554333333444455555555555444 2332334444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=6e-23  Score=211.40  Aligned_cols=230  Identities=22%  Similarity=0.185  Sum_probs=144.9

Q ss_pred             CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254          155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM  234 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  234 (555)
                      +|++|++++|.+++..+..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            45555555555555444555555555555555555543333  555555555555555555221     12556666666


Q ss_pred             CccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEe
Q 040254          235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFL  314 (555)
Q Consensus       235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l  314 (555)
                      +|.+.+. +   ...+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+.       ..+++|+.|++
T Consensus       108 ~N~l~~~-~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-------~~l~~L~~L~L  176 (487)
T 3oja_A          108 NNNISRV-S---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-------ASSDTLEHLNL  176 (487)
T ss_dssp             SSCCCCE-E---ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-------GGTTTCCEEEC
T ss_pred             CCcCCCC-C---ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-------hhCCcccEEec
Confidence            6655522 2   12345666666666666665555566666666666666666654444332       12356667777


Q ss_pred             ccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCc
Q 040254          315 TMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN  394 (555)
Q Consensus       315 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  394 (555)
                      ++|.+++.+..       ..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus       177 s~N~l~~~~~~-------~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          177 QYNFIYDVKGQ-------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             TTSCCCEEECC-------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             CCCcccccccc-------ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence            77766655322       347889999999999985 4445888999999999999999 46777888999999999999


Q ss_pred             cCc-cccchhhhccccch
Q 040254          395 NIS-GEFPKELSRLQPLV  411 (555)
Q Consensus       395 ~l~-~~~~~~~~~l~~L~  411 (555)
                      ++. +.+|..+..+..+.
T Consensus       248 ~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          248 GFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             CBCHHHHHHHHTTCHHHH
T ss_pred             CCcCcchHHHHHhCCCCc
Confidence            998 55665555544443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1.3e-22  Score=189.23  Aligned_cols=223  Identities=16%  Similarity=0.163  Sum_probs=167.6

Q ss_pred             CCCCceEeccc-Ccce--eeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEE
Q 040254            6 AAGGQIISCHT-EKSI--LRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIID   82 (555)
Q Consensus         6 ~~~~~~~~c~~-~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   82 (555)
                      |++...|.|.. ....  |..                -+.+|. +.  +++++|++++|.+. .++...|..+++|++|+
T Consensus         2 ~~cp~~C~C~~~~~~~v~c~~----------------l~~ip~-~~--~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   61 (239)
T 2xwt_C            2 GCSSPPCECHQEEDFRVTCKD----------------IQRIPS-LP--PSTQTLKLIETHLR-TIPSHAFSNLPNISRIY   61 (239)
T ss_dssp             -CCSSSCSEEECSTTEEEECS----------------CSSCCC-CC--TTCCEEEEESCCCS-EECTTTTTTCTTCCEEE
T ss_pred             CCCCCCCeeCCCCcceeEccC----------------ccccCC-CC--CcccEEEEeCCcce-EECHHHccCCCCCcEEe
Confidence            56677788876 4333  322                244555 43  38999999999998 78888899999999999


Q ss_pred             ccCCc-CccccCCCCccccccCCCCCccEEEccC-CcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCC---
Q 040254           83 LSYNS-LSGELTGLIPSLAWNHSFCSMRLLDFSY-NDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLE---  157 (555)
Q Consensus        83 Ls~n~-i~~~~~~~~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~---  157 (555)
                      +++|+ ++...+..|.      .+++|++|++++ |.+++..+.+|.++++|++|++++|.+.+ +|. +..+++|+   
T Consensus        62 l~~n~~l~~i~~~~f~------~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~  133 (239)
T 2xwt_C           62 VSIDVTLQQLESHSFY------NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFF  133 (239)
T ss_dssp             EECCSSCCEECTTTEE------SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEE
T ss_pred             CCCCCCcceeCHhHcC------CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccccc
Confidence            99997 8876665664      455899999998 89987666788899999999999887665 565 77778887   


Q ss_pred             eeEeecc-cCcccccccccCCCCCc-EEEcccCccccCCCcCccCCCCCCeeeCccCc-CcccCCccccCC-CCCCEEEC
Q 040254          158 EPSLHFN-KLSGFISNDIINLTSLL-VLELYSKELIGSIPRDIGKLTNLKYLLLYRNN-LSGSLPSSMMNC-TNLKTLNL  233 (555)
Q Consensus       158 ~L~l~~n-~i~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~~-~~L~~L~l  233 (555)
                      +|++++| .++.+.+..|.++++|+ +|++++|.+....+..|.. ++|++|++++|. ++...+..+..+ ++|++|++
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence            8889888 88887777788888888 8888888887444444544 788888888884 775556667777 78888888


Q ss_pred             cCccCccccCcccccCCCCCcEEEcccc
Q 040254          234 MGNLFAGNLSAYNFSVLSQLETIDLYIN  261 (555)
Q Consensus       234 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n  261 (555)
                      ++|.+. .++..   .+++|+.|+++++
T Consensus       213 ~~N~l~-~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          213 SQTSVT-ALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred             CCCccc-cCChh---HhccCceeeccCc
Confidence            888776 44422   4567777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.4e-22  Score=190.02  Aligned_cols=181  Identities=20%  Similarity=0.196  Sum_probs=103.4

Q ss_pred             ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254           47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL  126 (555)
Q Consensus        47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  126 (555)
                      +..+++|+.|+++++.+. .++.  +..+++|++|++++|.+++.     +.+.   .+++|++|++++|.+++..+..+
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~-----~~l~---~l~~L~~L~L~~n~l~~~~~~~~  105 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI-----SALK---ELTNLTYLILTGNQLQSLPNGVF  105 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC-----GGGT---TCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc-----hhhc---CCCCCCEEECCCCccCccChhHh
Confidence            445666677777766665 4442  55566666666666666532     1111   44466666666666665444555


Q ss_pred             cCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCe
Q 040254          127 GNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKY  206 (555)
Q Consensus       127 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  206 (555)
                      .++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus       106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD  185 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence            66666666666666655544444555666666666666665555555555566666666666555444444555555555


Q ss_pred             eeCccCcCcccCCccccCCCCCCEEECcCccC
Q 040254          207 LLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLF  238 (555)
Q Consensus       207 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l  238 (555)
                      |++++|.+.+..+..+..+++|++|++++|.+
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            55555555544444455555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.4e-21  Score=187.17  Aligned_cols=201  Identities=21%  Similarity=0.159  Sum_probs=96.8

Q ss_pred             ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254           47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL  126 (555)
Q Consensus        47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  126 (555)
                      +.+++++++++++++.+. .+|..++   +.+++|++++|++++..+..+.      .+++|++|++++|.+++. +. .
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~-~~-~   73 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLM------PYTRLTQLNLDRAELTKL-QV-D   73 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGT------TCTTCCEEECTTSCCCEE-EC-C
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhh------cCCCCCEEECCCCccCcc-cC-C
Confidence            445555555555555555 4554322   4555555555555544333332      233555555555555532 21 1


Q ss_pred             cCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCe
Q 040254          127 GNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKY  206 (555)
Q Consensus       127 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  206 (555)
                      ..+++|++|++++|.+. .+|..+..+++|++|++++|+++.+.+..|.++++|++|++++|.+....+..|..+++|+.
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence            44555555555554433 34444445555555555555555544444555555555555555554444444445555555


Q ss_pred             eeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccc
Q 040254          207 LLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM  262 (555)
Q Consensus       207 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  262 (555)
                      |++++|.++...+..+..+++|++|++++|.+. .++. .+.....|+.+++++|.
T Consensus       153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~-~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK-GFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT-TTTTTCCCSEEECCSCC
T ss_pred             EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh-hhcccccCCeEEeCCCC
Confidence            555555554333333444455555555555444 3332 22223344444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=9.1e-22  Score=187.05  Aligned_cols=227  Identities=21%  Similarity=0.162  Sum_probs=187.0

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR  131 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  131 (555)
                      ++..+++..+.+.+.+.   ...+++|++|++++|.++..     +.+.   .+++|++|++++|.+++ + ..+..+++
T Consensus        20 ~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~-----~~l~---~l~~L~~L~l~~n~l~~-~-~~l~~l~~   86 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV-----QGIQ---YLPNVRYLALGGNKLHD-I-SALKELTN   86 (272)
T ss_dssp             HHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCC-----TTGG---GCTTCCEEECTTSCCCC-C-GGGTTCTT
T ss_pred             HHHHHHhcCcccccccc---cccccceeeeeeCCCCcccc-----cccc---cCCCCcEEECCCCCCCC-c-hhhcCCCC
Confidence            33445666666653222   55688999999999988743     2222   56699999999999985 3 47889999


Q ss_pred             CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254          132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR  211 (555)
Q Consensus       132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  211 (555)
                      |++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A           87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence            99999999988877777788999999999999999988888889999999999999999877777788999999999999


Q ss_pred             CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccC
Q 040254          212 NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQI  291 (555)
Q Consensus       212 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  291 (555)
                      |.+++..+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|.+.       +.++.++.++++.|.+.|.+
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGB
T ss_pred             CCcCccCHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcc
Confidence            99997777778889999999999999984 55467888999999999999776       34678999999999999988


Q ss_pred             Chhhhhcc
Q 040254          292 PPEIIKLK  299 (555)
Q Consensus       292 ~~~l~~l~  299 (555)
                      |.++..+.
T Consensus       239 p~~~~~~~  246 (272)
T 3rfs_A          239 RNSAGSVA  246 (272)
T ss_dssp             BCTTSCBC
T ss_pred             cCcccccC
Confidence            88776554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3.8e-21  Score=184.17  Aligned_cols=199  Identities=20%  Similarity=0.192  Sum_probs=173.5

Q ss_pred             eeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCC
Q 040254           28 NILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS  107 (555)
Q Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  107 (555)
                      ....+++.+++++. +|..+.  +++++|+|++|.+. .++...|..+++|++|++++|++++..+.        ..+++
T Consensus        11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~l~~   78 (290)
T 1p9a_G           11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--------GTLPV   78 (290)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--------SCCTT
T ss_pred             CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--------CCCCc
Confidence            34555677777764 555554  69999999999998 67777899999999999999999865432        25679


Q ss_pred             ccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc
Q 040254          108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS  187 (555)
Q Consensus       108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~  187 (555)
                      |++|++++|.++ .+|..+.++++|++|++++|++....+..|.++++|++|++++|+++.+.+..|..+++|+.|++++
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            999999999999 5888899999999999999998877778899999999999999999998888899999999999999


Q ss_pred             CccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254          188 KELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG  240 (555)
Q Consensus       188 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  240 (555)
                      |++....+..|..+++|++|++++|.++ .+|..+....+|+.+++.+|++.+
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            9998777777889999999999999999 677788888999999999998864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.4e-22  Score=201.03  Aligned_cols=110  Identities=18%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             EEcccCccccCCCcCccCCCCCCeeeCccCcCcccCC----ccccCCC-CCCEEECcCccCccccCcccccCC-----CC
Q 040254          183 LELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLP----SSMMNCT-NLKTLNLMGNLFAGNLSAYNFSVL-----SQ  252 (555)
Q Consensus       183 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~l-----~~  252 (555)
                      ++++.|.+.+.+|..+...++|++|++++|.+.+..+    ..+..++ +|++|++++|.+.+..+ ..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCCC
Confidence            4566666666666555555557777777777764443    4555666 67777777776653222 223222     56


Q ss_pred             CcEEEccccccccccccc----ccCC-CCCcEEEcccceecccCCh
Q 040254          253 LETIDLYINMFTGSFLLT----LTSC-RLLTALRLACNQLEGQIPP  293 (555)
Q Consensus       253 L~~L~l~~n~~~~~~~~~----l~~~-~~L~~L~l~~n~~~~~~~~  293 (555)
                      |++|++++|.+++..+..    +..+ ++|++|++++|++++..+.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  127 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS  127 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH
Confidence            666666666665543332    2233 5666666666666544333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.6e-22  Score=200.81  Aligned_cols=270  Identities=17%  Similarity=0.154  Sum_probs=157.6

Q ss_pred             EEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc----HhhhcCC-CCCeeEeecccCcccccccccCC-----CC
Q 040254          110 LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP----DDIYAAA-SLEEPSLHFNKLSGFISNDIINL-----TS  179 (555)
Q Consensus       110 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l-----~~  179 (555)
                      ++++++|.+++.+|..+....+|++|++++|.+....+    ..+.+++ +|++|++++|.++...+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46778888887666666666668888888887766655    5666777 78888888888777655555554     77


Q ss_pred             CcEEEcccCccccCCCcCc----cCC-CCCCeeeCccCcCcccCCccc----cC-CCCCCEEECcCccCccccCcccccC
Q 040254          180 LLVLELYSKELIGSIPRDI----GKL-TNLKYLLLYRNNLSGSLPSSM----MN-CTNLKTLNLMGNLFAGNLSAYNFSV  249 (555)
Q Consensus       180 L~~L~L~~n~~~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~l----~~-~~~L~~L~l~~n~l~~~~~~~~~~~  249 (555)
                      |++|++++|.+.+..+..+    ..+ ++|++|++++|.++...+..+    .. .++|++|++++|.+.+... ..   
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~---  157 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-DE---  157 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-HH---
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-HH---
Confidence            7777777777765544432    233 667777777776654333222    22 2456666666665542111 00   


Q ss_pred             CCCCcEEEcccccccccccccccCCC-CCcEEEcccceecccCChhhhhcccccccCC-CCCcEEEeccccCCCCCCccc
Q 040254          250 LSQLETIDLYINMFTGSFLLTLTSCR-LLTALRLACNQLEGQIPPEIIKLKSLILMGC-KNLNVLFLTMNFMNEATPNYD  327 (555)
Q Consensus       250 l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~-~~L~~L~l~~n~~~~~~~~~~  327 (555)
                                       ....+...+ +|++|++++|++++..+..+...    +..+ ++|+.|++++|.++.......
T Consensus       158 -----------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----l~~~~~~L~~L~Ls~N~i~~~~~~~l  216 (362)
T 3goz_A          158 -----------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKF----LASIPASVTSLDLSANLLGLKSYAEL  216 (362)
T ss_dssp             -----------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH----HHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             -----------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHH----HHhCCCCCCEEECCCCCCChhHHHHH
Confidence                             111122222 44444444444443333332221    2222 245555555555544332222


Q ss_pred             cccccCCCCCccEEEccCcccccccc----hhhhCCCCCcEEEccCCccccc-------cCccccCCCCCcEEEccCccC
Q 040254          328 QNKISDGFQNLRAVSLAGCQLTGQVP----LWLSKLTKLEVLLLSGNQITGS-------IPGWFGNLPSLFYFALSQNNI  396 (555)
Q Consensus       328 ~~~~~~~~~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l  396 (555)
                      ...+....++|++|++++|.+++..+    ..+..+++|++|++++|.+.+.       ++..+..+++|++|++++|++
T Consensus       217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            22222234577888888887765433    3446678888999988885432       234567788899999999998


Q ss_pred             ccccchhh
Q 040254          397 SGEFPKEL  404 (555)
Q Consensus       397 ~~~~~~~~  404 (555)
                      ....+..+
T Consensus       297 ~~~~~~~~  304 (362)
T 3goz_A          297 HPSHSIPI  304 (362)
T ss_dssp             CGGGCHHH
T ss_pred             CCcchHHH
Confidence            86644433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.2e-21  Score=180.78  Aligned_cols=214  Identities=14%  Similarity=0.117  Sum_probs=181.2

Q ss_pred             CCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCc-CcCcCchhHHhcCCCCCEEEccC-
Q 040254            8 GGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNH-VHGPLPINSFHFLTLLEIIDLSY-   85 (555)
Q Consensus         8 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~-   85 (555)
                      .+..+.|...+.+..  .+..+..+++++|.|++..+..|..+++|++|++++|. ++ .++...|..+++|++|++++ 
T Consensus        14 ~~~~v~c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~   90 (239)
T 2xwt_C           14 EDFRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNT   90 (239)
T ss_dssp             STTEEEECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEE
T ss_pred             CcceeEccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCC
Confidence            455677877554444  44578899999999999999899999999999999997 87 78888899999999999999 


Q ss_pred             CcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCc---EEEccCC-CCCCCCcHhhhcCCCCC-eeE
Q 040254           86 NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLK---SFQAGYS-NLLRSLPDDIYAAASLE-EPS  160 (555)
Q Consensus        86 n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~---~L~L~~~-~~~~~~~~~~~~l~~L~-~L~  160 (555)
                      |+++...+..|..      +++|++|++++|.+++ +|. +..+++|+   +|++++| .+....+..|.++++|+ +|+
T Consensus        91 n~l~~i~~~~f~~------l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~  162 (239)
T 2xwt_C           91 RNLTYIDPDALKE------LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK  162 (239)
T ss_dssp             TTCCEECTTSEEC------CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred             CCeeEcCHHHhCC------CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence            9999776666654      5599999999999996 665 88889998   9999999 77666666789999999 999


Q ss_pred             eecccCcccccccccCCCCCcEEEcccCc-cccCCCcCccCC-CCCCeeeCccCcCcccCCccccCCCCCCEEECcCc
Q 040254          161 LHFNKLSGFISNDIINLTSLLVLELYSKE-LIGSIPRDIGKL-TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGN  236 (555)
Q Consensus       161 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n  236 (555)
                      +++|.++.+.+..+.. ++|++|++++|+ +....+..|..+ ++|+.|++++|.++. +|..  .+++|+.|++.++
T Consensus       163 l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          163 LYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             cCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            9999999776666666 899999999995 877767788999 999999999999984 4443  6789999999876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=2.7e-22  Score=201.11  Aligned_cols=134  Identities=19%  Similarity=0.177  Sum_probs=78.7

Q ss_pred             CCccEEEccCcccc-cccc---hhhhCCCCCcEEEccCCcccc-----ccCccccCCCCCcEEEccCccCc----cccch
Q 040254          336 QNLRAVSLAGCQLT-GQVP---LWLSKLTKLEVLLLSGNQITG-----SIPGWFGNLPSLFYFALSQNNIS----GEFPK  402 (555)
Q Consensus       336 ~~L~~L~l~~n~i~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~  402 (555)
                      ++|++|++++|+++ ...+   ..+..+++|++|++++|+++.     ..+..+..+++|++|+|++|.++    ..+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            45555555555554 1222   344555666666666666552     12224555666666666666664    34444


Q ss_pred             hhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc----CChhcc--CCCCCCeeeCC
Q 040254          403 ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR----IPAETG--QLKFLNVLDLG  476 (555)
Q Consensus       403 ~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~----~~~~~~--~l~~L~~L~Ls  476 (555)
                      .+..++.|.                                    .|++++|.+++.    ++..+.  .+++|++|+|+
T Consensus       239 ~l~~~~~L~------------------------------------~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~  282 (386)
T 2ca6_A          239 ALKSWPNLR------------------------------------ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ  282 (386)
T ss_dssp             HGGGCTTCC------------------------------------EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred             HHccCCCcC------------------------------------EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence            444444444                                    366666666543    344443  37778888888


Q ss_pred             Ccccee----ecchhh-hCCccCCeeeCCCCCCC
Q 040254          477 NNNFAG----SIPNQI-SQLTILERLDLSKNHLS  505 (555)
Q Consensus       477 ~N~l~~----~~~~~l-~~l~~L~~L~Ls~N~l~  505 (555)
                      +|.+++    .+|..+ ..+++|++|++++|+++
T Consensus       283 ~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             SSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            888876    366666 55778888888888876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=3.2e-20  Score=174.21  Aligned_cols=133  Identities=23%  Similarity=0.254  Sum_probs=58.2

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      +|++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|++++|.++++.+..|..+++|++|+++
T Consensus        60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence            33333333333333333333344444444444443333333333444444444444444444333344444444444444


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA  239 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  239 (555)
                      +|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus       140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            44444333334444455555555555554333334444455555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=5e-21  Score=185.70  Aligned_cols=202  Identities=15%  Similarity=0.079  Sum_probs=86.0

Q ss_pred             CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCC----ccccCCCCCcEEEccCCCCCCCCcHhh
Q 040254           75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVP----PRLGNCSRLKSFQAGYSNLLRSLPDDI  150 (555)
Q Consensus        75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~L~~~~~~~~~~~~~  150 (555)
                      +++|++|++++|++++..+..+..    ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+....+..+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  165 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLE----ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV  165 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSS----CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred             cCceeEEEeeCCEeccchhhhhhh----ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence            344555555555555444433310    023355555555555553222    122344555555555555444444444


Q ss_pred             hcCCCCCeeEeecccCccc---c-cccccCCCCCcEEEcccCccccCCCc----CccCCCCCCeeeCccCcCcccCCccc
Q 040254          151 YAAASLEEPSLHFNKLSGF---I-SNDIINLTSLLVLELYSKELIGSIPR----DIGKLTNLKYLLLYRNNLSGSLPSSM  222 (555)
Q Consensus       151 ~~l~~L~~L~l~~n~i~~~---~-~~~~~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l  222 (555)
                      ..+++|++|++++|++.+.   . +..+..+++|++|++++|.++. ++.    .+..+++|++|++++|.+.+..|..+
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence            4455555555555544321   1 1112344445555555544431 111    12334445555555554443333333


Q ss_pred             cCC---CCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEccccee
Q 040254          223 MNC---TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQL  287 (555)
Q Consensus       223 ~~~---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~  287 (555)
                      ..+   ++|++|++++|.+. .++.. +  .++|+.|++++|.+++..  .+..+++|+.|++++|++
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~-~--~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLE-QVPKG-L--PAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCC-SCCSC-C--CSCCSCEECCSCCCCSCC--CTTSCCCCSCEECSSTTT
T ss_pred             HhccCcCcCCEEECCCCCCC-chhhh-h--cCCCCEEECCCCcCCCCc--hhhhCCCccEEECcCCCC
Confidence            333   34444444444444 33321 1  134444444444444321  123334444444444433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=6e-21  Score=185.12  Aligned_cols=204  Identities=21%  Similarity=0.152  Sum_probs=100.9

Q ss_pred             CCCeeEeecccCcccccccc--cCCCCCcEEEcccCccccCCC----cCccCCCCCCeeeCccCcCcccCCccccCCCCC
Q 040254          155 SLEEPSLHFNKLSGFISNDI--INLTSLLVLELYSKELIGSIP----RDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNL  228 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L  228 (555)
                      +|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            34444444444444333333  444444444444444433222    112234455555555555544444444445555


Q ss_pred             CEEECcCccCccc--c-CcccccCCCCCcEEEccccccccccc--c-cccCCCCCcEEEcccceecccCChhhhhccccc
Q 040254          229 KTLNLMGNLFAGN--L-SAYNFSVLSQLETIDLYINMFTGSFL--L-TLTSCRLLTALRLACNQLEGQIPPEIIKLKSLI  302 (555)
Q Consensus       229 ~~L~l~~n~l~~~--~-~~~~~~~l~~L~~L~l~~n~~~~~~~--~-~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~  302 (555)
                      ++|++++|.+.+.  + ....+..+++|++|++++|.++....  . .+..+++|++|++++|++.+..|..+..+    
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~----  247 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC----  247 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC----
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc----
Confidence            5555555543321  1 11112344445555555554432111  0 12344555555555555554333322211    


Q ss_pred             ccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccC
Q 040254          303 LMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGN  382 (555)
Q Consensus       303 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  382 (555)
                                                    ..+++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..
T Consensus       248 ------------------------------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~  292 (310)
T 4glp_A          248 ------------------------------MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE  292 (310)
T ss_dssp             ------------------------------CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTS
T ss_pred             ------------------------------cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhh
Confidence                                          22356777777777776 4555443  6788888888887743 32 566


Q ss_pred             CCCCcEEEccCccCc
Q 040254          383 LPSLFYFALSQNNIS  397 (555)
Q Consensus       383 l~~L~~L~L~~n~l~  397 (555)
                      +++|++|++++|+++
T Consensus       293 l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          293 LPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCCCSCEECSSTTTS
T ss_pred             CCCccEEECcCCCCC
Confidence            778888888888776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=2.2e-21  Score=190.73  Aligned_cols=222  Identities=17%  Similarity=0.183  Sum_probs=152.4

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcC--CCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc-CCccccC
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFL--TLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ-VPPRLGN  128 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~  128 (555)
                      .++.++++++.+.    +..+..+  +.+++|++++|.+.+..+..+       .+++|++|++++|.+++. ++..+..
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-------~~~~L~~L~L~~~~l~~~~~~~~~~~  116 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-------SPFRVQHMDLSNSVIEVSTLHGILSQ  116 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCC-------CCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhc-------cCCCCCEEEccCCCcCHHHHHHHHhh
Confidence            3678888887665    2445556  888888888888876554422       455888888888887754 6667788


Q ss_pred             CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc-cCccc-ccccccCCCCCcEEEcccC-ccccC-CCcCccCCC-C
Q 040254          129 CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN-KLSGF-ISNDIINLTSLLVLELYSK-ELIGS-IPRDIGKLT-N  203 (555)
Q Consensus       129 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~l~~l~-~  203 (555)
                      +++|++|++++|.+....+..+.++++|++|++++| .+++. .+..+..+++|++|++++| .+.+. ++..+..++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            888888888888777677777888888888888888 56642 3445677888888888888 66543 344566677 7


Q ss_pred             CCeeeCccCc--Cc-ccCCccccCCCCCCEEECcCcc-CccccCcccccCCCCCcEEEccccc-ccccccccccCCCCCc
Q 040254          204 LKYLLLYRNN--LS-GSLPSSMMNCTNLKTLNLMGNL-FAGNLSAYNFSVLSQLETIDLYINM-FTGSFLLTLTSCRLLT  278 (555)
Q Consensus       204 L~~L~L~~n~--l~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~  278 (555)
                      |++|++++|.  ++ ..++..+..+++|++|++++|. +++..+ ..+..+++|++|++++|. +.......+..+++|+
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  275 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  275 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence            8888888773  43 2344555667777777777776 443333 355666777777777773 3333333456677777


Q ss_pred             EEEcccc
Q 040254          279 ALRLACN  285 (555)
Q Consensus       279 ~L~l~~n  285 (555)
                      +|++++|
T Consensus       276 ~L~l~~~  282 (336)
T 2ast_B          276 TLQVFGI  282 (336)
T ss_dssp             EEECTTS
T ss_pred             EEeccCc
Confidence            7777766

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.1e-19  Score=170.40  Aligned_cols=179  Identities=24%  Similarity=0.234  Sum_probs=116.8

Q ss_pred             CCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCC
Q 040254           76 TLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAAS  155 (555)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~  155 (555)
                      ...++++++++.++. .|..++.        ++++|++++|.+++..+..+.++++|++|++++|.+....+..+.++++
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~~~--------~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   84 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGIPA--------DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE   84 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCCCT--------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             CCCeEEecCCCCccc-cCCCCCC--------CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc
Confidence            345667777777663 2333332        6777777777777666666777777888887777777666666777777


Q ss_pred             CCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcC
Q 040254          156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG  235 (555)
Q Consensus       156 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  235 (555)
                      |++|++++|.++.+.+..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A           85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence            77777777777766666667777777777777777655555566667777777777766644444566666666666666


Q ss_pred             ccCccccCcccccCCCCCcEEEccccccc
Q 040254          236 NLFAGNLSAYNFSVLSQLETIDLYINMFT  264 (555)
Q Consensus       236 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~  264 (555)
                      |.+. .++...+..+++|+.|++++|.+.
T Consensus       165 N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          165 NQLQ-SVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             SCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CcCC-ccCHHHHhCCCCCCEEEeeCCcee
Confidence            6665 333344555555555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=7.3e-20  Score=177.04  Aligned_cols=207  Identities=18%  Similarity=0.226  Sum_probs=129.3

Q ss_pred             cCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEE
Q 040254           33 PAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD  112 (555)
Q Consensus        33 ~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~  112 (555)
                      .+..+.+.+..  .+.++++|++|+++++.+. .++.  +..+++|++|++++|++++..+  +.      .+++|++|+
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~------~l~~L~~L~   91 (308)
T 1h6u_A           25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LK------NLTKITELE   91 (308)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCCSCCEEE
T ss_pred             HhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--Hc------cCCCCCEEE
Confidence            34444444433  2445777888888888777 5652  6667888888888887775432  22      455788888


Q ss_pred             ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc
Q 040254          113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG  192 (555)
Q Consensus       113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~  192 (555)
                      +++|.+++ + ..+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+..
T Consensus        92 L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A           92 LSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             CCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             ccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence            88877774 3 3577777777777777765543 3 36677777777777777765433  6666777777777776654


Q ss_pred             CCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254          193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      ..+  +..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ ++  .+..+++|+.|++++|.+++
T Consensus       166 ~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          166 LTP--LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeeec
Confidence            322  56666666666666666532 22 5556666666666666552 22  24555556666665555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=6.7e-22  Score=198.25  Aligned_cols=65  Identities=31%  Similarity=0.409  Sum_probs=36.7

Q ss_pred             CCccEEEccCcccccc----cchhhhC--CCCCcEEEccCCcccc----ccCccc-cCCCCCcEEEccCccCcccc
Q 040254          336 QNLRAVSLAGCQLTGQ----VPLWLSK--LTKLEVLLLSGNQITG----SIPGWF-GNLPSLFYFALSQNNISGEF  400 (555)
Q Consensus       336 ~~L~~L~l~~n~i~~~----~~~~l~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~  400 (555)
                      ++|++|++++|.+++.    ++.++..  +++|++|++++|.+++    .++..+ .++++|++|++++|++++..
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            3444555555544432    3344422  6667777777777665    245444 44677777777777776444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=5.2e-20  Score=167.50  Aligned_cols=189  Identities=21%  Similarity=0.191  Sum_probs=151.5

Q ss_pred             CceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcC
Q 040254            9 GQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSL   88 (555)
Q Consensus         9 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i   88 (555)
                      ++.|.|.+..+.|...+             + ..+|..+  .++|++|++++|.+. .++...|..+++|++|++++|++
T Consensus         2 p~~C~C~~~~v~c~~~~-------------l-~~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l   64 (208)
T 2o6s_A            2 PSRCSCSGTTVECYSQG-------------R-TSVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKL   64 (208)
T ss_dssp             CTTCEEETTEEECCSSC-------------C-SSCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC
T ss_pred             cCCCEECCCEEEecCCC-------------c-cCCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCcc
Confidence            56788888777776643             2 2344443  468999999999998 78888898999999999999999


Q ss_pred             ccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcc
Q 040254           89 SGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSG  168 (555)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~  168 (555)
                      ++..+..+.      .+++|++|++++|.+++..+..+.++++|++|++++|.+....+..+.++++|++|++++|.+++
T Consensus        65 ~~~~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           65 QSLPNGVFN------KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CCCCTTTTT------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CccChhhcC------CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            876655554      34599999999999997666678899999999999988877666668888999999999999988


Q ss_pred             cccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCC
Q 040254          169 FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTN  227 (555)
Q Consensus       169 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~  227 (555)
                      +.+..+..+++|++|++++|.+.       ..+++|++|+++.|.+++.+|..++.++.
T Consensus       139 ~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          139 VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             eCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            77777888999999999888664       34567888888888888888877766543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=1e-19  Score=179.52  Aligned_cols=246  Identities=14%  Similarity=0.106  Sum_probs=181.5

Q ss_pred             eEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCcc
Q 040254           11 IISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG   90 (555)
Q Consensus        11 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~   90 (555)
                      +|.|.+.++.|...             +++ .+|..+  .+++++|+|++|+++ .+|..+|.++++|++|+|++|++.+
T Consensus         6 ~C~C~~~~v~C~~~-------------~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~   68 (350)
T 4ay9_X            6 ICHCSNRVFLCQES-------------KVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE   68 (350)
T ss_dssp             SSEEETTEEEEEST-------------TCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCC
T ss_pred             ccEeeCCEEEecCC-------------CCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCC
Confidence            48888777676654             333 566666  368999999999998 8999999999999999999999865


Q ss_pred             ccC-CCCccccccCCCCCcc-EEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeec-ccCc
Q 040254           91 ELT-GLIPSLAWNHSFCSMR-LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF-NKLS  167 (555)
Q Consensus        91 ~~~-~~~~~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~  167 (555)
                      ..+ +.|..      +++++ .+.+++|+++...+.+|.++++|++|++++|.+....+..+....++..+++.+ +.+.
T Consensus        69 ~i~~~~f~~------L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~  142 (350)
T 4ay9_X           69 VIEADVFSN------LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH  142 (350)
T ss_dssp             EECTTSBCS------CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred             ccChhHhhc------chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence            433 44543      33555 567778899987788899999999999999888766666666677788888865 5777


Q ss_pred             ccccccccCCC-CCcEEEcccCccccCCCcCccCCCCCCeeeCcc-CcCcccCCccccCCCCCCEEECcCccCccccCcc
Q 040254          168 GFISNDIINLT-SLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR-NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAY  245 (555)
Q Consensus       168 ~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~  245 (555)
                      .+.+..|..+. .++.|++++|.+....+..| ...+|+.+++.+ |.++...+..|..+++|++|++++|.++ .++..
T Consensus       143 ~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~  220 (350)
T 4ay9_X          143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY  220 (350)
T ss_dssp             EECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS
T ss_pred             cccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh
Confidence            77777777765 68899999999875544444 457899999975 5666444456788999999999999887 66644


Q ss_pred             cccCCCCCcEEEcccccccccccccccCCCCCcEEEcccc
Q 040254          246 NFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN  285 (555)
Q Consensus       246 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  285 (555)
                      .   +.+|++|.+.++.--...+ .+..+++|+.+++.++
T Consensus       221 ~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          221 G---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             S---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             h---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            3   4566666655443222233 4677888888888654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.8e-19  Score=174.35  Aligned_cols=208  Identities=18%  Similarity=0.238  Sum_probs=153.5

Q ss_pred             EEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEE
Q 040254           56 LNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSF  135 (555)
Q Consensus        56 L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  135 (555)
                      +.+..+.+.+.+.   +..+++|++|++++|.++..     +.+.   .+++|++|++++|.+++ ++. +..+++|++|
T Consensus        24 ~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~l-----~~~~---~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L   90 (308)
T 1h6u_A           24 IAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI-----EGVQ---YLNNLIGLELKDNQITD-LAP-LKNLTKITEL   90 (308)
T ss_dssp             HHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCC-----TTGG---GCTTCCEEECCSSCCCC-CGG-GTTCCSCCEE
T ss_pred             HHhCCCCcCceec---HHHcCCcCEEEeeCCCccCc-----hhhh---ccCCCCEEEccCCcCCC-Chh-HccCCCCCEE
Confidence            3445555552222   44577899999999888743     2222   46689999999998885 444 8888899999


Q ss_pred             EccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCc
Q 040254          136 QAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS  215 (555)
Q Consensus       136 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  215 (555)
                      ++++|.+.. ++ .+..+++|++|++++|.++++.  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus        91 ~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A           91 ELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             EccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            999887655 33 6888888889999888888753  37888888888888888865433  777888888888888887


Q ss_pred             ccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecc
Q 040254          216 GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG  289 (555)
Q Consensus       216 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  289 (555)
                      +. +. +..+++|++|++++|.+. .++  .+..+++|++|++++|.+.+..  .+..+++|+.|++++|++.+
T Consensus       165 ~~-~~-l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          165 DL-TP-LANLSKLTTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CC-GG-GTTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CC-hh-hcCCCCCCEEECCCCccC-cCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            43 33 778888888888888877 343  2677788888888888887654  36778888888888887763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=1.5e-20  Score=184.88  Aligned_cols=205  Identities=18%  Similarity=0.153  Sum_probs=105.8

Q ss_pred             CCCCeeEeecccCcccccccccCCCCCcEEEcccCccccC-CCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEE
Q 040254          154 ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGS-IPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLN  232 (555)
Q Consensus       154 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~  232 (555)
                      +.++.|++++|.+.+..+. +..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4555555555555443322 33455555555555554432 344445555555555555555544444455555566666


Q ss_pred             CcCc-cCccccCcccccCCCCCcEEEcccc-ccccc-ccccccCCC-CCcEEEcccce--ec-ccCChhhhhcccccccC
Q 040254          233 LMGN-LFAGNLSAYNFSVLSQLETIDLYIN-MFTGS-FLLTLTSCR-LLTALRLACNQ--LE-GQIPPEIIKLKSLILMG  305 (555)
Q Consensus       233 l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~~~-~L~~L~l~~n~--~~-~~~~~~l~~l~~l~~~~  305 (555)
                      +++| .+.+......+..+++|++|++++| .+++. .+..+..++ +|++|++++|.  ++ +.++..+          
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~----------  218 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV----------  218 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH----------
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH----------
Confidence            6555 3332111123444555666666555 55432 233344555 66666666653  22 0111111          


Q ss_pred             CCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcc-cccccchhhhCCCCCcEEEccCCc-cccccCccccCC
Q 040254          306 CKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQ-LTGQVPLWLSKLTKLEVLLLSGNQ-ITGSIPGWFGNL  383 (555)
Q Consensus       306 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l  383 (555)
                                                 ..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+
T Consensus       219 ---------------------------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~  271 (336)
T 2ast_B          219 ---------------------------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  271 (336)
T ss_dssp             ---------------------------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ---------------------------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence                                       234566666666666 444555566667777777777773 322222245667


Q ss_pred             CCCcEEEccCccCc
Q 040254          384 PSLFYFALSQNNIS  397 (555)
Q Consensus       384 ~~L~~L~L~~n~l~  397 (555)
                      ++|++|++++| ++
T Consensus       272 ~~L~~L~l~~~-i~  284 (336)
T 2ast_B          272 PTLKTLQVFGI-VP  284 (336)
T ss_dssp             TTCCEEECTTS-SC
T ss_pred             CCCCEEeccCc-cC
Confidence            77777777777 44

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=6.8e-19  Score=173.62  Aligned_cols=201  Identities=16%  Similarity=0.140  Sum_probs=106.9

Q ss_pred             CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccC-CccccCCCCC
Q 040254           54 SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQV-PPRLGNCSRL  132 (555)
Q Consensus        54 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L  132 (555)
                      ++++.+++.++ .||..+   .+++++|+|++|+|+...++.|..      +++|++|+|++|++.+.+ +.+|.+++++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~------l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l   81 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSG------FGDLEKIEISQNDVLEVIEADVFSNLPKL   81 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTT------CTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcC------CCCCCEEECcCCCCCCccChhHhhcchhh
Confidence            45666777776 676543   245677777777776555445543      336677777766664423 3455666665


Q ss_pred             cE-EEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc-CccccCCCcCccCCC-CCCeeeC
Q 040254          133 KS-FQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS-KELIGSIPRDIGKLT-NLKYLLL  209 (555)
Q Consensus       133 ~~-L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~-~L~~L~L  209 (555)
                      ++ +.+..|++....|..|..+++|++|++++|.++...+..+....++..|++.+ +.+....+..|..+. .++.|++
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            54 33344555544455566666666666666666655555555555566666644 233333333344332 4555666


Q ss_pred             ccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254          210 YRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       210 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      ++|.++. ++.......+|+++++.++...+.++...|..+++|+.|++++|.++.
T Consensus       162 ~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          162 NKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             CSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             ccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence            6665552 232333334555555543222224444445555555555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=2.1e-18  Score=156.84  Aligned_cols=131  Identities=24%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      +|++|++++|.+++..+..+.++++|++|++++|.+....+..|..+++|++|++++|.++++.+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            34444444444443333334444444444444444433333333444444455554444444444444455555555555


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCcc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNL  237 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~  237 (555)
                      +|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            555544433344455555555555555543333334445555555555553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.5e-18  Score=158.94  Aligned_cols=164  Identities=17%  Similarity=0.138  Sum_probs=108.2

Q ss_pred             cCCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEcc
Q 040254            5 PAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLS   84 (555)
Q Consensus         5 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   84 (555)
                      .++++..|.|.+..+.|...             +++ .+|..+.  +++++|++++|.+. .++...|..+++|++|+|+
T Consensus         2 ~~~CP~~C~C~~~~v~c~~~-------------~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls   64 (220)
T 2v9t_B            2 SLHCPAACTCSNNIVDCRGK-------------GLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLS   64 (220)
T ss_dssp             CCCSCTTSEEETTEEECTTS-------------CCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECC
T ss_pred             CCCCCCCCEECCCEEEcCCC-------------CcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECC
Confidence            45677788887655554443             333 3454443  57888888888887 6777777778888888888


Q ss_pred             CCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc
Q 040254           85 YNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN  164 (555)
Q Consensus        85 ~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n  164 (555)
                      +|++++..+..|..      +++|++|++++|.++...+..|.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus        65 ~N~i~~~~~~~~~~------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           65 NNQISELAPDAFQG------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             SSCCCEECTTTTTT------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCCcCHHHhhC------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence            88887666666653      337777777777777544455666777777777766666655666666666666666666


Q ss_pred             cCcccccccccCCCCCcEEEcccCccc
Q 040254          165 KLSGFISNDIINLTSLLVLELYSKELI  191 (555)
Q Consensus       165 ~i~~~~~~~~~~l~~L~~L~L~~n~~~  191 (555)
                      .++++.+..|..+++|++|++++|++.
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          139 KLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            666655555555666666666555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=6.2e-19  Score=174.61  Aligned_cols=178  Identities=25%  Similarity=0.239  Sum_probs=121.8

Q ss_pred             cEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhh-CCCCCcEEEccCCccccccCccccCCCCCcE
Q 040254          310 NVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS-KLTKLEVLLLSGNQITGSIPGWFGNLPSLFY  388 (555)
Q Consensus       310 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  388 (555)
                      +.++++++.++..+..        .++.++.|++++|++++..+.++. .+++|++|+|++|++.+..+..|..+++|++
T Consensus        21 ~~l~c~~~~l~~iP~~--------~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS--------LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY   92 (361)
T ss_dssp             TEEECCSSCCSSCCSS--------CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CEEEeCCCCcCccCcc--------CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence            3555666665554432        234577788888877766666666 7788888888888887666677778888888


Q ss_pred             EEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCC
Q 040254          389 FALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLK  468 (555)
Q Consensus       389 L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~  468 (555)
                      |+|++|++++..+..+..+..|.                                    .|+|++|++++..+..|.+++
T Consensus        93 L~Ls~N~l~~~~~~~~~~l~~L~------------------------------------~L~L~~N~i~~~~~~~~~~l~  136 (361)
T 2xot_A           93 LDLSSNHLHTLDEFLFSDLQALE------------------------------------VLLLYNNHIVVVDRNAFEDMA  136 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCC------------------------------------EEECCSSCCCEECTTTTTTCT
T ss_pred             EECCCCcCCcCCHHHhCCCcCCC------------------------------------EEECCCCcccEECHHHhCCcc
Confidence            88888888766555666666665                                    478888888877777788888


Q ss_pred             CCCeeeCCCccceeecchhh---hCCccCCeeeCCCCCCCCCcceecCCCC--CCCCC--CCCCccCCCcCCCCcc
Q 040254          469 FLNVLDLGNNNFAGSIPNQI---SQLTILERLDLSKNHLSENNLQGPIPSG--GQLHT--FPPSSFEGNPEFCSDI  537 (555)
Q Consensus       469 ~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~--l~~~~~~gNp~~c~~~  537 (555)
                      +|++|+|++|+|++..+..+   ..+++|+.|||++|+|+      .+|..  ..+..  +..+.+.||||.|++.
T Consensus       137 ~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~------~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK------KLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC------CCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC------ccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            88888888888885444444   56788888888888886      23311  11222  2556788888888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=3.2e-18  Score=156.78  Aligned_cols=164  Identities=16%  Similarity=0.135  Sum_probs=90.1

Q ss_pred             cCCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEcc
Q 040254            5 PAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLS   84 (555)
Q Consensus         5 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   84 (555)
                      +.+++.+|.|.+....             ++++.++. +|..+.  +.+++|+|++|.+.+..+..+|..+++|++|+++
T Consensus         2 ~~~CP~~C~C~~~~l~-------------~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~   65 (220)
T 2v70_A            2 SLACPEKCRCEGTTVD-------------CSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS   65 (220)
T ss_dssp             --CCCTTCEEETTEEE-------------CCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC
T ss_pred             CCCCCCCCEECCCEeE-------------eCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECC
Confidence            3466777777654333             33344443 455443  3457777777777733344556667777777777


Q ss_pred             CCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc
Q 040254           85 YNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN  164 (555)
Q Consensus        85 ~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n  164 (555)
                      +|+|++..+..|..      +++|++|++++|.+++..+..|.++++|++|++++|.+....|..|..+++|++|++++|
T Consensus        66 ~N~i~~i~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A           66 NNKITDIEEGAFEG------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             SSCCCEECTTTTTT------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred             CCcCCEECHHHhCC------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence            77766555444433      336666666666666544445555555555555555555444444555555555555555


Q ss_pred             cCcccccccccCCCCCcEEEcccCcc
Q 040254          165 KLSGFISNDIINLTSLLVLELYSKEL  190 (555)
Q Consensus       165 ~i~~~~~~~~~~l~~L~~L~L~~n~~  190 (555)
                      .++++.+..|..+++|+.|++++|.+
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          140 QITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             cCCEECHHHhcCCCCCCEEEecCcCC
Confidence            55544444444444444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=1.8e-18  Score=171.34  Aligned_cols=163  Identities=21%  Similarity=0.158  Sum_probs=92.1

Q ss_pred             CCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHh-cCCCCCEEEcc
Q 040254            6 AAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFH-FLTLLEIIDLS   84 (555)
Q Consensus         6 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~-~l~~L~~L~Ls   84 (555)
                      .++...|.|....+.|             ++++++. +|..+.  +.+++|+|++|.++ .++...|. .+++|++|+|+
T Consensus        10 ~~Cp~~C~C~~~~l~c-------------~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~   72 (361)
T 2xot_A           10 VSCPANCLCASNILSC-------------SKQQLPN-VPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLS   72 (361)
T ss_dssp             TTCCTTCEEETTEEEC-------------CSSCCSS-CCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECC
T ss_pred             CCCCCCCEECCCEEEe-------------CCCCcCc-cCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECC
Confidence            4556666675433333             3333433 444443  34677777777776 56666665 67777777777


Q ss_pred             CCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc
Q 040254           85 YNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN  164 (555)
Q Consensus        85 ~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n  164 (555)
                      +|+|+...+..|..      +++|++|++++|+++...+..|.++++|++|+|++|.+....+..|.++++|++|++++|
T Consensus        73 ~N~i~~i~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           73 HNHLNFISSEAFVP------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             SSCCCEECTTTTTT------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCccChhhccC------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence            77776655554443      336666666666666554555666666666666666655555555555566666666666


Q ss_pred             cCcccccccc---cCCCCCcEEEcccCccc
Q 040254          165 KLSGFISNDI---INLTSLLVLELYSKELI  191 (555)
Q Consensus       165 ~i~~~~~~~~---~~l~~L~~L~L~~n~~~  191 (555)
                      .++.+.+..|   ..+++|+.|++++|.+.
T Consensus       147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          147 QISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            5555443333   33444555555544444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.7e-17  Score=152.95  Aligned_cols=164  Identities=22%  Similarity=0.212  Sum_probs=120.3

Q ss_pred             cCCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEcc
Q 040254            5 PAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLS   84 (555)
Q Consensus         5 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   84 (555)
                      .++....+.|.+.++.|....              .+.+|..+.  ++|++|+|++|.+. .++...|..+++|++|+|+
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~~~--------------l~~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~   72 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRSKR--------------HASVPAGIP--TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLG   72 (229)
T ss_dssp             -CCCCTTCEEETTEEECTTSC--------------CSSCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             hccCCCCCEEeCCEeEccCCC--------------cCccCCCCC--CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECC
Confidence            456666678888777776543              345555443  78899999999988 5666678888999999999


Q ss_pred             CCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc
Q 040254           85 YNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN  164 (555)
Q Consensus        85 ~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n  164 (555)
                      +|+++...+..|..      +++|++|++++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|
T Consensus        73 ~N~l~~i~~~~~~~------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           73 SNQLGALPVGVFDS------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             SSCCCCCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred             CCCCCCcChhhccc------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence            99887665555543      448888888888888766666788888888888877765 56777777777888888877


Q ss_pred             cCcccccccccCCCCCcEEEcccCcccc
Q 040254          165 KLSGFISNDIINLTSLLVLELYSKELIG  192 (555)
Q Consensus       165 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~  192 (555)
                      .++.+.+..+..+++|+.|++++|.+..
T Consensus       146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          146 QLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            7777666667777777777777776653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=152.25  Aligned_cols=133  Identities=21%  Similarity=0.238  Sum_probs=76.5

Q ss_pred             ccEEEccCCcCCccCC-ccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          108 MRLLDFSYNDFSSQVP-PRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       108 L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      +++|++++|.+++..+ ..|.++++|++|++++|.+....+..|.++++|++|++++|.++++.+..|..+++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            4455555555544322 234555555555555555544444455555555556666665555555556666666666666


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG  240 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  240 (555)
                      +|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            666665555566666666666666666665555566666666666666666553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.6e-17  Score=152.13  Aligned_cols=134  Identities=20%  Similarity=0.225  Sum_probs=85.9

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      +|++|++++|.+++..+..|..+++|++|++++|.+....|..|.++++|++|++++|.++.+.+..|.++++|++|+++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            45556666665555444455666666666666666555555566666666666666666666555556666777777777


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG  240 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  240 (555)
                      +|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            777666666666667777777777777765555556666777777777776653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.3e-17  Score=159.84  Aligned_cols=184  Identities=20%  Similarity=0.262  Sum_probs=114.8

Q ss_pred             cCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEE
Q 040254           33 PAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD  112 (555)
Q Consensus        33 ~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~  112 (555)
                      .+..+.+.+..  .+..+++|++|++++|.+. .++.  +..+++|++|++++|++++..+  +.      .+++|++|+
T Consensus        30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~------~l~~L~~L~   96 (291)
T 1h6t_A           30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LA------NLKNLGWLF   96 (291)
T ss_dssp             HTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEE
T ss_pred             HhcCCCccccc--chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cc------cCCCCCEEE
Confidence            34444444433  2445777778888877776 5553  6667777888887777775432  21      455777777


Q ss_pred             ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc
Q 040254          113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG  192 (555)
Q Consensus       113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~  192 (555)
                      +++|.+++ ++ .+..+++|++|++++|.+...  ..+..+++|++|++++|.++++  ..+..+++|++|++++|.+.+
T Consensus        97 l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A           97 LDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             CCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            77777764 32 367777777777777665543  3566667777777777776654  456666666666666666654


Q ss_pred             CCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCc
Q 040254          193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA  239 (555)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  239 (555)
                      ..+  +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+.
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             chh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence            433  5566666666666666653 22 3555666666666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=4.8e-17  Score=155.76  Aligned_cols=186  Identities=21%  Similarity=0.267  Sum_probs=111.0

Q ss_pred             EEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEE
Q 040254           56 LNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSF  135 (555)
Q Consensus        56 L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  135 (555)
                      +.+..+.+.+..+   +..+++|++|++++|.+...     +.+.   .+++|++|++++|.+++. +. +.++++|++|
T Consensus        29 ~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~-----~~~~---~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L   95 (291)
T 1h6t_A           29 DNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV-----QGIQ---YLPNVTKLFLNGNKLTDI-KP-LANLKNLGWL   95 (291)
T ss_dssp             HHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC-----TTGG---GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEE
T ss_pred             HHhcCCCcccccc---hhhcCcccEEEccCCCcccC-----hhHh---cCCCCCEEEccCCccCCC-cc-cccCCCCCEE
Confidence            3455555542222   34567777777777776643     1111   445777777777777753 32 6777777777


Q ss_pred             EccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCc
Q 040254          136 QAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS  215 (555)
Q Consensus       136 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  215 (555)
                      ++++|.+.. + ..+..+++|++|++++|.++.+  ..+..+++|++|++++|.+...  ..+..+++|++|++++|.+.
T Consensus        96 ~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A           96 FLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             ECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            777766544 2 2366667777777777776654  3466666677777766666543  34566666666666666665


Q ss_pred             ccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254          216 GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       216 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      +..+  +..+++|++|++++|.+. .++  .+..+++|+.|++++|.+..
T Consensus       170 ~~~~--l~~l~~L~~L~L~~N~i~-~l~--~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          170 DIVP--LAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred             cchh--hcCCCccCEEECCCCcCC-CCh--hhccCCCCCEEECcCCcccC
Confidence            3322  556666666666666655 232  25555566666665555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=4.6e-17  Score=168.89  Aligned_cols=188  Identities=23%  Similarity=0.248  Sum_probs=102.4

Q ss_pred             CCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCC
Q 040254           77 LLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASL  156 (555)
Q Consensus        77 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L  156 (555)
                      +|++|++++|++++ .|..++        ++|++|++++|.++. +|   ..+++|++|++++|.+.+ +|. +.+  +|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--------~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L  122 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--------PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SL  122 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--------TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--------CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CC
Confidence            55555555555553 222111        245555555555552 34   234555555555555444 443 332  55


Q ss_pred             CeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCc
Q 040254          157 EEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGN  236 (555)
Q Consensus       157 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n  236 (555)
                      ++|++++|.++++..    .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|++|++++|
T Consensus       123 ~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          123 KHLDVDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             CEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred             CEEECCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence            566666665555322    45566666666666553 333   34566666666666653 444 33  56666666666


Q ss_pred             cCccccCcccccCCCCC-------cEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcc
Q 040254          237 LFAGNLSAYNFSVLSQL-------ETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLK  299 (555)
Q Consensus       237 ~l~~~~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~  299 (555)
                      .+. .++.  +..  +|       +.|++++|.++. .+..+..+++|+.|++++|++.+.+|..+..+.
T Consensus       191 ~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          191 LLE-SLPA--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CCS-SCCC--CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCC-chhh--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            665 4443  222  44       777777777764 344455577777777777777776666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=4.8e-17  Score=168.77  Aligned_cols=186  Identities=25%  Similarity=0.261  Sum_probs=138.7

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR  131 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  131 (555)
                      +|++|++++|.++ .+|..+   +++|++|+|++|+|+. .| .        .+++|++|++++|.+++ +|. +.+  +
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~-ip-~--------~l~~L~~L~Ls~N~l~~-ip~-l~~--~  121 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALIS-LP-E--------LPASLEYLDACDNRLST-LPE-LPA--S  121 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSC-CC-C--------CCTTCCEEECCSSCCSC-CCC-CCT--T
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcc-cc-c--------ccCCCCEEEccCCCCCC-cch-hhc--C
Confidence            8888888888887 477654   3678888888888873 22 1        23488888888888886 665 554  8


Q ss_pred             CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254          132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR  211 (555)
Q Consensus       132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  211 (555)
                      |++|++++|.+.+ +|.   .+++|++|++++|.++++..    .+++|++|++++|.+.+ +|. |.  ++|++|++++
T Consensus       122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST  189 (571)
T ss_dssp             CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred             CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence            8888888887766 555   57888888888888887433    56788889998888875 555 55  8888999998


Q ss_pred             CcCcccCCccccCCCCC-------CEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccC
Q 040254          212 NNLSGSLPSSMMNCTNL-------KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTS  273 (555)
Q Consensus       212 n~l~~~~~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  273 (555)
                      |.++ .+|. +..  +|       ++|++++|.+. .+|.. +..+++|+.|++++|.+++..+..+..
T Consensus       190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            8888 5555 443  66       88999998887 57643 444888999999999888766665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=4.3e-17  Score=150.31  Aligned_cols=152  Identities=22%  Similarity=0.212  Sum_probs=115.9

Q ss_pred             CcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcE
Q 040254          309 LNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFY  388 (555)
Q Consensus       309 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  388 (555)
                      .+.++.+++.++..+..        ..++|++|++++|.+++..+..+..+++|++|++++|++....+..|..+++|++
T Consensus        21 ~~~v~c~~~~l~~ip~~--------~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG--------IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV   92 (229)
T ss_dssp             TTEEECTTSCCSSCCSC--------CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEeEccCCCcCccCCC--------CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence            34566666666555532        2367888888888888777778888888888888888887666666788888888


Q ss_pred             EEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCC
Q 040254          389 FALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLK  468 (555)
Q Consensus       389 L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~  468 (555)
                      |+|++|++++..+..+..+..|.                                    .|++++|+++ .+|..+..++
T Consensus        93 L~Ls~N~l~~l~~~~~~~l~~L~------------------------------------~L~Ls~N~l~-~lp~~~~~l~  135 (229)
T 3e6j_A           93 LDLGTNQLTVLPSAVFDRLVHLK------------------------------------ELFMCCNKLT-ELPRGIERLT  135 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCC------------------------------------EEECCSSCCC-SCCTTGGGCT
T ss_pred             EECCCCcCCccChhHhCcchhhC------------------------------------eEeccCCccc-ccCcccccCC
Confidence            88888888865555566666665                                    4888888888 6777788888


Q ss_pred             CCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          469 FLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       469 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      +|++|+|++|+|++..+..+..+++|+.|++++|+++
T Consensus       136 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            8888888888888666677888888888888888876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1e-17  Score=175.79  Aligned_cols=190  Identities=19%  Similarity=0.246  Sum_probs=152.7

Q ss_pred             eeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCC
Q 040254           28 NILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS  107 (555)
Q Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  107 (555)
                      ..+.+.+..+.+.+..+  +..+++|+.|++++|.+. .++.  +..+++|++|+|++|++++..+  +.      .+++
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~------~l~~   88 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LT------NLKN   88 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GG------GCTT
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hc------cCCC
Confidence            34455566666666553  567889999999999988 6763  7789999999999999886543  22      5669


Q ss_pred             ccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc
Q 040254          108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS  187 (555)
Q Consensus       108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~  187 (555)
                      |++|+|++|.+.+ ++ .+..+++|++|+|++|.+...  ..+..+++|+.|++++|.++++  ..+..+++|+.|+|++
T Consensus        89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A           89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED  162 (605)
T ss_dssp             CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred             CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence            9999999999985 33 688899999999998887653  4688899999999999999876  6788899999999999


Q ss_pred             CccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254          188 KELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG  240 (555)
Q Consensus       188 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  240 (555)
                      |.+.+..|  +..+++|+.|+|++|.+.+.  ..+..+++|+.|++++|.+.+
T Consensus       163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          163 NQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            99876655  88889999999999998843  358888999999999998763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=6.9e-17  Score=145.30  Aligned_cols=154  Identities=13%  Similarity=0.205  Sum_probs=96.0

Q ss_pred             ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254           47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL  126 (555)
Q Consensus        47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  126 (555)
                      ...+++|++|++++|.+. .++  .+..+++|++|++++|.++..     +.+.   .+++|++|++++|.+++..+..+
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~~-----~~l~---~l~~L~~L~l~~n~l~~~~~~~l  108 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATNY-----NPIS---GLSNLERLRIMGKDVTSDKIPNL  108 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSCC-----GGGT---TCTTCCEEEEECTTCBGGGSCCC
T ss_pred             hhhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCcc-----hhhh---cCCCCCEEEeECCccCcccChhh
Confidence            355677777777777776 666  266677777777777765522     1111   45577777777777776556667


Q ss_pred             cCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeeccc-CcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCC
Q 040254          127 GNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK-LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK  205 (555)
Q Consensus       127 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~  205 (555)
                      ..+++|++|++++|.+....+..+..+++|++|++++|. ++.+ + .+..+++|++|++++|.+.+. + .+..+++|+
T Consensus       109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~  184 (197)
T 4ezg_A          109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLN  184 (197)
T ss_dssp             TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCC
T ss_pred             cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCC
Confidence            777777777777776666566666667777777777765 5443 2 456666666666666665432 2 455555666


Q ss_pred             eeeCccCcCc
Q 040254          206 YLLLYRNNLS  215 (555)
Q Consensus       206 ~L~L~~n~l~  215 (555)
                      +|++++|.+.
T Consensus       185 ~L~l~~N~i~  194 (197)
T 4ezg_A          185 QLYAFSQTIG  194 (197)
T ss_dssp             EEEECBC---
T ss_pred             EEEeeCcccC
Confidence            6666655543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.1e-16  Score=167.87  Aligned_cols=192  Identities=20%  Similarity=0.231  Sum_probs=140.4

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR  131 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  131 (555)
                      .+..+.+..+.+.+ +..  +..+++|+.|++++|.+....     .+.   .+++|++|+|++|.+.+..+  +..+++
T Consensus        22 ~l~~l~l~~~~i~~-~~~--~~~L~~L~~L~l~~n~i~~l~-----~l~---~l~~L~~L~Ls~N~l~~~~~--l~~l~~   88 (605)
T 1m9s_A           22 ETIKDNLKKKSVTD-AVT--QNELNSIDQIIANNSDIKSVQ-----GIQ---YLPNVTKLFLNGNKLTDIKP--LTNLKN   88 (605)
T ss_dssp             HHHHHHTTCSCTTS-EEC--HHHHTTCCCCBCTTCCCCCCT-----TGG---GCTTCCEEECTTSCCCCCGG--GGGCTT
T ss_pred             HHHHHhccCCCccc-ccc--hhcCCCCCEEECcCCCCCCCh-----HHc---cCCCCCEEEeeCCCCCCChh--hccCCC
Confidence            34455666666663 332  456788888889888877432     222   46688888888888886333  788888


Q ss_pred             CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254          132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR  211 (555)
Q Consensus       132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  211 (555)
                      |++|+|++|.+.. ++ .+..+++|++|++++|.++.+  ..+..+++|+.|++++|.+...  ..+..+++|+.|+|++
T Consensus        89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A           89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED  162 (605)
T ss_dssp             CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred             CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence            8888888887654 33 677888888888888888764  4577888888888888888654  4677788888888888


Q ss_pred             CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccc
Q 040254          212 NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF  267 (555)
Q Consensus       212 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  267 (555)
                      |.+.+..+  +..+++|++|++++|.+.+ ++  .+..+++|+.|++++|.+.+..
T Consensus       163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          163 NQISDIVP--LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEECCC
T ss_pred             CcCCCchh--hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCcCCc
Confidence            88875444  7778888888888888773 43  4777788888888888776543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=1.3e-16  Score=143.49  Aligned_cols=151  Identities=18%  Similarity=0.184  Sum_probs=117.8

Q ss_pred             CCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCC
Q 040254          306 CKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPS  385 (555)
Q Consensus       306 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  385 (555)
                      +++|+.+++++|.+...+.  .     ..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+..+++
T Consensus        43 l~~L~~L~l~~n~i~~l~~--l-----~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  113 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLTG--I-----EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS  113 (197)
T ss_dssp             HHTCCEEEEESSCCSCCTT--G-----GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred             cCCccEEeccCCCccChHH--H-----hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence            3466777777777665431  1     56778888898888765  3347788899999999999998777888888999


Q ss_pred             CcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcc-ccccCChhc
Q 040254          386 LFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNS-LSGRIPAET  464 (555)
Q Consensus       386 L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~-l~~~~~~~~  464 (555)
                      |++|++++|++++..+..+..++.|.                                    .|++++|+ ++ .++ .+
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~------------------------------------~L~L~~n~~i~-~~~-~l  155 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVN------------------------------------SIDLSYNGAIT-DIM-PL  155 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCC------------------------------------EEECCSCTBCC-CCG-GG
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCC------------------------------------EEEccCCCCcc-ccH-hh
Confidence            99999999999877777777777776                                    58889888 55 455 68


Q ss_pred             cCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       465 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      ..+++|++|++++|++++ ++ .+..+++|++|++++|+|.
T Consensus       156 ~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          156 KTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             cCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            889999999999999985 43 7888999999999999985

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=3.5e-16  Score=139.88  Aligned_cols=57  Identities=23%  Similarity=0.304  Sum_probs=32.1

Q ss_pred             EEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       449 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      |++++|++++..+..|.++++|++|+|++|+|++..|..+..+++|++|++++|+++
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            445555555444444555555666666666665555555555556666666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=2.4e-16  Score=154.02  Aligned_cols=105  Identities=13%  Similarity=-0.048  Sum_probs=75.7

Q ss_pred             CCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCccccc
Q 040254          358 KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH  437 (555)
Q Consensus       358 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~  437 (555)
                      .+++|+++++++|+++.+...+|.++++|+.|++.+| +.......|.++..|.-                         
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~-------------------------  277 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG-------------------------  277 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE-------------------------
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE-------------------------
Confidence            3677777777777777666667777777777777776 55455555666655530                         


Q ss_pred             ccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeC
Q 040254          438 QYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDL  499 (555)
Q Consensus       438 ~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  499 (555)
                                .+++.+ +++...+.+|.++++|+++++++|.++...+..|..+++|+.++.
T Consensus       278 ----------~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          278 ----------TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ----------EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ----------EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence                      256655 566566677888888888888888888777778888888888764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=3.4e-16  Score=147.41  Aligned_cols=122  Identities=23%  Similarity=0.350  Sum_probs=56.9

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      +|++|++++|.+++ ++. +.++++|++|++++|.+.. ++. +.. ++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        64 ~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls  136 (263)
T 1xeu_A           64 NLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIR  136 (263)
T ss_dssp             TCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECT
T ss_pred             CCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECC
Confidence            44444444444443 221 4444444444444444332 111 111 4455555555555442  234455555555555


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA  239 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  239 (555)
                      +|.+.+. + .+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus       137 ~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          137 NNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             CCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            5555432 1 344555555555555555533  34555555555655555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=6.5e-16  Score=150.88  Aligned_cols=288  Identities=13%  Similarity=0.090  Sum_probs=129.7

Q ss_pred             CCCCCEEEccCCcCcCcCchhHHhc-CCCCCEEEccCCcCc--cccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254           50 LTHISHLNLSHNHVHGPLPINSFHF-LTLLEIIDLSYNSLS--GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL  126 (555)
Q Consensus        50 l~~L~~L~L~~n~~~~~i~~~~~~~-l~~L~~L~Ls~n~i~--~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  126 (555)
                      +++++.|.++++--.  .....+.. +++|++|||++|++.  ......++         .++.+.+..+.+   ...+|
T Consensus        24 ~~~l~~L~l~g~i~~--~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---------~~~~~~~~~~~I---~~~aF   89 (329)
T 3sb4_A           24 ANSITHLTLTGKLNA--EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---------NGKFYIYMANFV---PAYAF   89 (329)
T ss_dssp             HHHCSEEEEEEEECH--HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---------GGCCEEECTTEE---CTTTT
T ss_pred             hCceeEEEEeccccH--HHHHHHHHhhccCeEEecCcceeEEecCcccccc---------cccccccccccc---CHHHh
Confidence            567888888764211  11123333 677888888888777  22222222         234444444422   23344


Q ss_pred             cC--------CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCc
Q 040254          127 GN--------CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI  198 (555)
Q Consensus       127 ~~--------l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l  198 (555)
                      .+        +++|+.+++.+ .+...-+.+|.++++|+++++..|.+..+.+.+|.++.++..+.........      
T Consensus        90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~------  162 (329)
T 3sb4_A           90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR------  162 (329)
T ss_dssp             EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH------
T ss_pred             cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh------
Confidence            45        66666666654 4444334445555555555555555555555555554444444433211100      


Q ss_pred             cCCCCCCeeeCccCcCcccCCccccCCCCCC-EEECcCccCccccCccccc---CCCCCcEEEcccccccccccccccCC
Q 040254          199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK-TLNLMGNLFAGNLSAYNFS---VLSQLETIDLYINMFTGSFLLTLTSC  274 (555)
Q Consensus       199 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~l~~~  274 (555)
                                    .........|..+..|+ .+.+....   .++...+.   ...+++.+.+.++-...........+
T Consensus       163 --------------~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~  225 (329)
T 3sb4_A          163 --------------FKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYM  225 (329)
T ss_dssp             --------------TSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHC
T ss_pred             --------------ccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhc
Confidence                          00001111222233333 22221110   01100010   12233333333221110000001124


Q ss_pred             CCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCcc-EEEccCcccccccc
Q 040254          275 RLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLR-AVSLAGCQLTGQVP  353 (555)
Q Consensus       275 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~  353 (555)
                      ++|+.++++.|.+.        .+..-.|.+|.+|+.+++..| +......++     ..+++|+ .+.+.+ .++...+
T Consensus       226 ~~L~~l~L~~n~i~--------~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF-----~~~~~L~~~l~l~~-~l~~I~~  290 (329)
T 3sb4_A          226 PNLVSLDISKTNAT--------TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF-----SNCGRLAGTLELPA-SVTAIEF  290 (329)
T ss_dssp             TTCCEEECTTBCCC--------EECTTTTTTCTTCCEEECCTT-CCEECTTTT-----TTCTTCCEEEEECT-TCCEECT
T ss_pred             CCCeEEECCCCCcc--------eecHhhhhCCCCCCEEECCcc-cceehHHHh-----hCChhccEEEEEcc-cceEEch
Confidence            45555555554443        112223444444555555444 333333333     4555566 666655 4544455


Q ss_pred             hhhhCCCCCcEEEccCCccccccCccccCCCCCcEEE
Q 040254          354 LWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFA  390 (555)
Q Consensus       354 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  390 (555)
                      .+|..|++|+.+++++|++..+.+.+|.++++|+.++
T Consensus       291 ~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          291 GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            6666777777777766666656666677777776665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=2e-18  Score=180.17  Aligned_cols=122  Identities=22%  Similarity=0.213  Sum_probs=71.8

Q ss_pred             CccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhcc
Q 040254          337 NLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNK  416 (555)
Q Consensus       337 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~  416 (555)
                      .|+.|++++|.+++ +|. ++.+++|+.|++++|+++ .+|..+..+++|++|+|++|.+++ +| .+..++.|.     
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~-----  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ-----  511 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC-----
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc-----
Confidence            35666666666653 443 666666666666666666 555666666666666666666664 44 455555544     


Q ss_pred             CCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccC-ChhccCCCCCCeeeCCCccceeecch---hhhCCc
Q 040254          417 FNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRI-PAETGQLKFLNVLDLGNNNFAGSIPN---QISQLT  492 (555)
Q Consensus       417 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~  492 (555)
                                                     .|++++|++++.. |..+..+++|++|+|++|.+++.+|.   .+..++
T Consensus       512 -------------------------------~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp  560 (567)
T 1dce_A          512 -------------------------------ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  560 (567)
T ss_dssp             -------------------------------EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             -------------------------------EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence                                           3666666666554 66666666666666666666644332   123356


Q ss_pred             cCCeeeC
Q 040254          493 ILERLDL  499 (555)
Q Consensus       493 ~L~~L~L  499 (555)
                      +|+.||+
T Consensus       561 ~L~~L~l  567 (567)
T 1dce_A          561 SVSSILT  567 (567)
T ss_dssp             TCSEEEC
T ss_pred             ccCccCC
Confidence            6666653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=8.5e-16  Score=144.67  Aligned_cols=149  Identities=25%  Similarity=0.289  Sum_probs=70.1

Q ss_pred             ccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCC
Q 040254          126 LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK  205 (555)
Q Consensus       126 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~  205 (555)
                      +..+++|++|++++|.+.. ++ .+..+++|++|++++|.++++.+  +..+++|++|++++|.+.+. +. +.. ++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~  109 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLS  109 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCC
T ss_pred             hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-Cccc
Confidence            3344444444444443322 22 34444444444444444444322  44444555555555444322 21 112 4555


Q ss_pred             eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccc
Q 040254          206 YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN  285 (555)
Q Consensus       206 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  285 (555)
                      +|++++|.+++ + ..+..+++|++|++++|.+.+ ++  .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|
T Consensus       110 ~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          110 RLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             EEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred             EEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence            55555555542 2 234555555555555555542 22  344555555555555555543  34555556666666666


Q ss_pred             eec
Q 040254          286 QLE  288 (555)
Q Consensus       286 ~~~  288 (555)
                      ++.
T Consensus       183 ~~~  185 (263)
T 1xeu_A          183 KCV  185 (263)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.62  E-value=2.3e-14  Score=143.61  Aligned_cols=333  Identities=12%  Similarity=0.060  Sum_probs=231.0

Q ss_pred             CccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCc
Q 040254           38 LVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYND  117 (555)
Q Consensus        38 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~  117 (555)
                      .++.....+|..|.+|+.+.|..+ +. .|+..+|.+|++|+.+++..+ ++......|.      .+.+|+.+.+..+ 
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~------~c~~L~~i~~p~~-  127 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFS------GCYALKSILLPLM-  127 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTT------TCTTCCCCCCCTT-
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhc------ccccchhhcccCc-
Confidence            466677788999999999999754 66 788899999999999999764 4444444443      3447777777654 


Q ss_pred             CCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcC
Q 040254          118 FSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRD  197 (555)
Q Consensus       118 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  197 (555)
                      +......+|.++..+......  .....-..+|.++++|+.+.+..+ +..+....|.++.+|+.+.+..+ +.......
T Consensus       128 l~~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~  203 (394)
T 4fs7_A          128 LKSIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYC  203 (394)
T ss_dssp             CCEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTT
T ss_pred             eeeecceeeecccccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchh
Confidence            444555667777554444333  222333456888889999988755 44566778888999999988665 44455567


Q ss_pred             ccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCC
Q 040254          198 IGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLL  277 (555)
Q Consensus       198 l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  277 (555)
                      |..+..|+.+.+..+...  +.........|+.+.+.... . .+....|..+..++.+.+..+... ....++..+..+
T Consensus       204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l  278 (394)
T 4fs7_A          204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL  278 (394)
T ss_dssp             TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC
T ss_pred             hccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eecccccccccc
Confidence            888888888887765443  23344455788888886542 2 445567788888999888776433 556677888888


Q ss_pred             cEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhh
Q 040254          278 TALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS  357 (555)
Q Consensus       278 ~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  357 (555)
                      +.+......+.           ...+..|.+|+.+.+..+ +......++     ..+.+|+.+++..+ ++.....+|.
T Consensus       279 ~~~~~~~~~i~-----------~~~F~~~~~L~~i~l~~~-i~~I~~~aF-----~~c~~L~~i~lp~~-v~~I~~~aF~  340 (394)
T 4fs7_A          279 KKVIYGSVIVP-----------EKTFYGCSSLTEVKLLDS-VKFIGEEAF-----ESCTSLVSIDLPYL-VEEIGKRSFR  340 (394)
T ss_dssp             CEEEECSSEEC-----------TTTTTTCTTCCEEEECTT-CCEECTTTT-----TTCTTCCEECCCTT-CCEECTTTTT
T ss_pred             ceeccCceeec-----------cccccccccccccccccc-cceechhhh-----cCCCCCCEEEeCCc-ccEEhHHhcc
Confidence            88877655432           224677888998888754 444444443     67788999999654 6556678899


Q ss_pred             CCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccc
Q 040254          358 KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPL  410 (555)
Q Consensus       358 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  410 (555)
                      +|.+|+.+++..+ +..+...+|.+|++|+.+++..+ +. .+...|.+++.|
T Consensus       341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L  390 (394)
T 4fs7_A          341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKF  390 (394)
T ss_dssp             TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred             CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence            9999999999877 66677788999999999998754 22 223345444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2.2e-15  Score=131.67  Aligned_cols=135  Identities=23%  Similarity=0.235  Sum_probs=114.0

Q ss_pred             CCCCCccEEEccCcccc-cccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccch
Q 040254          333 DGFQNLRAVSLAGCQLT-GQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLV  411 (555)
Q Consensus       333 ~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  411 (555)
                      ..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..++.|.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            34577899999999987 56777788899999999999999855  6788899999999999999877777777777776


Q ss_pred             hhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccC-ChhccCCCCCCeeeCCCccceeecc---hh
Q 040254          412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRI-PAETGQLKFLNVLDLGNNNFAGSIP---NQ  487 (555)
Q Consensus       412 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~  487 (555)
                                                          .|++++|.+++.. +..+..+++|++|++++|.+++..+   ..
T Consensus        99 ------------------------------------~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  142 (168)
T 2ell_A           99 ------------------------------------HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV  142 (168)
T ss_dssp             ------------------------------------EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH
T ss_pred             ------------------------------------EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH
Confidence                                                5999999998542 2678999999999999999996655   58


Q ss_pred             hhCCccCCeeeCCCCCCC
Q 040254          488 ISQLTILERLDLSKNHLS  505 (555)
Q Consensus       488 l~~l~~L~~L~Ls~N~l~  505 (555)
                      +..+++|++|++++|.+.
T Consensus       143 ~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          143 FKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HTTCSSCCEETTEETTSC
T ss_pred             HHhCccCcEecCCCCChh
Confidence            899999999999999986

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=4e-14  Score=141.16  Aligned_cols=268  Identities=13%  Similarity=0.142  Sum_probs=193.8

Q ss_pred             CCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccC
Q 040254           49 NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGN  128 (555)
Q Consensus        49 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  128 (555)
                      .+..++.+.+.++ +. .|+..+|.++ +|+.+.+..+ ++.+....|..       ++|+.+.+.. .++.+...+|.+
T Consensus       111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-------~~L~~i~lp~-~l~~I~~~aF~~  178 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-------STVQEIVFPS-TLEQLKEDIFYY  178 (401)
T ss_dssp             ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-------CCCCEEECCT-TCCEECSSTTTT
T ss_pred             ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-------CCceEEEeCC-CccEehHHHhhC
Confidence            3467788887664 44 6777888875 7888888765 55444444432       3688888876 566566678888


Q ss_pred             CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeee
Q 040254          129 CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLL  208 (555)
Q Consensus       129 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  208 (555)
                      |++|+.+++..|.+...-...|. ...|+.+.+..+ ++.+...+|.++++|+.+++..+ +......+|.. .+|+.+.
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence            88888888887666554444454 678888888744 77777788888888998888764 44455566776 7888888


Q ss_pred             CccCcCcccCCccccCCCCCCEEECcCccCc----cccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEccc
Q 040254          209 LYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA----GNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLAC  284 (555)
Q Consensus       209 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  284 (555)
                      +. +.+.......|..+++|+++.+.++.+.    ..++...|.++++|+.+.+.+ .++.....+|..|.+|+.+.+..
T Consensus       255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred             eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence            84 4565566678888889999988876543    135667888999999999984 46667788888999999998865


Q ss_pred             ceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCC-CCccEEEccCcccc
Q 040254          285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGF-QNLRAVSLAGCQLT  349 (555)
Q Consensus       285 n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~  349 (555)
                      + +.        .+..-.|.+| +|+.+.+.+|.........+     .++ .+++.|.+..+.+.
T Consensus       333 ~-l~--------~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F-----~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          333 N-VT--------QINFSAFNNT-GIKEVKVEGTTPPQVFEKVW-----YGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             T-CC--------EECTTSSSSS-CCCEEEECCSSCCBCCCSSC-----CCSCTTCCEEEECGGGHH
T ss_pred             c-cc--------EEcHHhCCCC-CCCEEEEcCCCCcccccccc-----cCCCCCccEEEeCHHHHH
Confidence            4 22        3444468888 89999999987776655444     444 46889998877654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=4e-15  Score=133.00  Aligned_cols=122  Identities=17%  Similarity=0.157  Sum_probs=74.9

Q ss_pred             CCCccccCCccccCCCCCCEEEccCCcCcCcCch-hHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEcc
Q 040254           36 NKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPI-NSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFS  114 (555)
Q Consensus        36 ~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls  114 (555)
                      ++++ +.+|..+..  ++++|++++|.+. .++. .+|..+++|++|+|++|+|++..+..|..      +++|++|+++
T Consensus        17 ~~~l-~~ip~~~~~--~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls   86 (192)
T 1w8a_A           17 GRGL-KEIPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG------ASHIQELQLG   86 (192)
T ss_dssp             TSCC-SSCCSCCCT--TCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT------CTTCCEEECC
T ss_pred             CCCc-CcCccCCCC--CCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCC------cccCCEEECC
Confidence            3444 345554433  6777777777776 4443 35666777777777777777665555543      3367777777


Q ss_pred             CCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCc
Q 040254          115 YNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS  167 (555)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~  167 (555)
                      +|++++..+..|.++++|++|++++|++.+..|..+..+++|++|++++|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            77766655555666666666666666665555555555566666666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=2.2e-15  Score=128.82  Aligned_cols=131  Identities=21%  Similarity=0.185  Sum_probs=111.3

Q ss_pred             CCCCCccEEEccCcccc-cccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccch
Q 040254          333 DGFQNLRAVSLAGCQLT-GQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLV  411 (555)
Q Consensus       333 ~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  411 (555)
                      ..+++++.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..++.|.
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            34577999999999987 67788888999999999999999865  6788899999999999999977777777777776


Q ss_pred             hhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc-CChhccCCCCCCeeeCCCccceeecc---hh
Q 040254          412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR-IPAETGQLKFLNVLDLGNNNFAGSIP---NQ  487 (555)
Q Consensus       412 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~  487 (555)
                                                          .|++++|.+++. .+..+..+++|++|++++|.+++..+   ..
T Consensus        92 ------------------------------------~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  135 (149)
T 2je0_A           92 ------------------------------------HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV  135 (149)
T ss_dssp             ------------------------------------EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHH
T ss_pred             ------------------------------------EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHH
Confidence                                                599999999863 34778999999999999999996665   57


Q ss_pred             hhCCccCCeeeCCC
Q 040254          488 ISQLTILERLDLSK  501 (555)
Q Consensus       488 l~~l~~L~~L~Ls~  501 (555)
                      +..+++|++||+++
T Consensus       136 ~~~l~~L~~L~l~d  149 (149)
T 2je0_A          136 FKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHCTTCCEETTBC
T ss_pred             HHHCCCcccccCCC
Confidence            89999999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=7.5e-14  Score=139.19  Aligned_cols=268  Identities=11%  Similarity=0.110  Sum_probs=145.5

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      .++.+.+.++ ++.+...+|.++ +|+.+.+..+ +...-..+|.+ .+|+.+.+.. .++.+...+|.++++|+.+++.
T Consensus       114 ~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~  188 (401)
T 4fdw_A          114 GYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS  188 (401)
T ss_dssp             SCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred             CccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence            4555555432 333444455554 5666666532 33333334444 3466666654 4555555666666666666666


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS  266 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  266 (555)
                      .|.+.......|. ..+|+.+.+..+ +.......|..+++|+.+.+..+ +. .+....|.+ .+|+.+.+. +.++..
T Consensus       189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I  262 (401)
T 4fdw_A          189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNI  262 (401)
T ss_dssp             TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred             CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEE
Confidence            6666544444554 356666666533 44344555666666666666654 22 344455555 566666663 334444


Q ss_pred             ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254          267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC  346 (555)
Q Consensus       267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  346 (555)
                      ...+|..|++|+.+.+.++.+...   ....+..-.|.+|++|+.+.+.. .+......++     ..+.+|+.+.+..+
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~---~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF-----~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDD---PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL-----GGNRKVTQLTIPAN  333 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCC---TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT-----TTCCSCCEEEECTT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCC---cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh-----cCCCCccEEEECcc
Confidence            556666666666666665543310   11123333456666666666653 3444443333     55566666666443


Q ss_pred             ccccccchhhhCCCCCcEEEccCCccccccCccccCCC-CCcEEEccCccC
Q 040254          347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP-SLFYFALSQNNI  396 (555)
Q Consensus       347 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l  396 (555)
                       ++.....+|..+ +|+.+++.+|.+.......|..++ +++.|.+..+.+
T Consensus       334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence             444445666666 677777776666655555566553 566666665554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=1e-14  Score=127.50  Aligned_cols=132  Identities=20%  Similarity=0.233  Sum_probs=86.0

Q ss_pred             CCCCEEEccCCcCc-cccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254           76 TLLEIIDLSYNSLS-GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA  154 (555)
Q Consensus        76 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~  154 (555)
                      ++|++|++++|+++ +..|..+.      .+++|++|++++|.+++.  ..+..+++|++|++++|.+...+|..+..++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTA------EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCG------GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             ccCCEEECCCCCCChhhHHHHHH------hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            55666666666665 33333333      233677777777776643  5566777777777777776665666666677


Q ss_pred             CCCeeEeecccCccccc-ccccCCCCCcEEEcccCccccCCC---cCccCCCCCCeeeCccCcCc
Q 040254          155 SLEEPSLHFNKLSGFIS-NDIINLTSLLVLELYSKELIGSIP---RDIGKLTNLKYLLLYRNNLS  215 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~~n~l~  215 (555)
                      +|++|++++|.++++.. ..+..+++|++|++++|.+....+   ..+..+++|++|++++|.+.
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            77777777777766432 566777777777777777764443   35666777777777777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=4.2e-16  Score=167.78  Aligned_cols=158  Identities=23%  Similarity=0.287  Sum_probs=58.3

Q ss_pred             CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCC
Q 040254           51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCS  130 (555)
Q Consensus        51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  130 (555)
                      +.++.|+|.++.+. .++.      ..|+.++|+.+.|.+                    ++++.|.+. ..+..+..++
T Consensus       173 ~~~~~l~L~~n~~~-~~~~------~~l~~l~Ls~~~i~~--------------------~~~~~n~~~-~~~~~~~~l~  224 (727)
T 4b8c_D          173 PLTPKIELFANGKD-EANQ------ALLQHKKLSQYSIDE--------------------DDDIENRMV-MPKDSKYDDQ  224 (727)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             CccceEEeeCCCCC-cchh------hHhhcCccCcccccC--------------------cccccccee-cChhhhccCC
Confidence            56777888777776 3333      234455555554432                    222333333 2344455555


Q ss_pred             CCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCc
Q 040254          131 RLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLY  210 (555)
Q Consensus       131 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  210 (555)
                      .|++|+|++|.+. .+|..+.++++|++|+|++|.++. .|..|..+++|++|+|++|.+. .+|..|..+++|++|+|+
T Consensus       225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF  301 (727)
T ss_dssp             CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred             CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence            5555555554443 344444455555555555555552 3444555555555555555554 445555555555555555


Q ss_pred             cCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254          211 RNNLSGSLPSSMMNCTNLKTLNLMGNLFAG  240 (555)
Q Consensus       211 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  240 (555)
                      +|.+. .+|..+..+++|++|++++|.+.+
T Consensus       302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence            55554 444445555555555555555553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=2.7e-14  Score=127.51  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=83.8

Q ss_pred             CCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCC
Q 040254            7 AGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN   86 (555)
Q Consensus         7 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   86 (555)
                      +++..|.|.+..+.             +++++++ .+|..+.  ++|++|++++|.+. .+| ..|..+++|++|+|++|
T Consensus         3 ~CP~~C~C~~~~l~-------------~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N   64 (193)
T 2wfh_A            3 RCPTECTCLDTVVR-------------CSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNN   64 (193)
T ss_dssp             -CCTTCEEETTEEE-------------CTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSS
T ss_pred             CCCCCCEeCCCEEE-------------cCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCC
Confidence            45566677543333             3334444 3444443  57888888888887 677 45777788888888888


Q ss_pred             cCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccC
Q 040254           87 SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKL  166 (555)
Q Consensus        87 ~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i  166 (555)
                      +|++..+..|..      +++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus        65 ~i~~i~~~~f~~------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           65 RISTLSNQSFSN------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCCCCTTTTTT------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCCEeCHhHccC------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            777665555543      33677777777777665555666666666666666655544444455555555555555554


Q ss_pred             c
Q 040254          167 S  167 (555)
Q Consensus       167 ~  167 (555)
                      .
T Consensus       139 ~  139 (193)
T 2wfh_A          139 Y  139 (193)
T ss_dssp             E
T ss_pred             e
Confidence            3

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.56  E-value=2.3e-13  Score=136.31  Aligned_cols=323  Identities=13%  Similarity=0.075  Sum_probs=231.0

Q ss_pred             eeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCC
Q 040254           27 FNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC  106 (555)
Q Consensus        27 ~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  106 (555)
                      ..+..+.+. ++++.....+|.+|++|+.+++.++ +. .++..+|.++++|+.+.+..+ +.......|..      + 
T Consensus        71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~------~-  139 (394)
T 4fs7_A           71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG------C-  139 (394)
T ss_dssp             TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT------C-
T ss_pred             CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeec------c-
Confidence            344444443 4577777789999999999999866 55 788899999999999887754 33333334432      1 


Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY  186 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  186 (555)
                      .+....+... +......+|.++.+|+.+.+.. .....-...|.++.+|+.+.+..+ ++.+....|.++..|+.+.+.
T Consensus       140 ~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~-~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          140 DFKEITIPEG-VTVIGDEAFATCESLEYVSLPD-SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred             cccccccCcc-ccccchhhhcccCCCcEEecCC-ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence            2333333222 2334556799999999999974 344444567888999999999876 666777889999999999886


Q ss_pred             cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254          187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS  266 (555)
Q Consensus       187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  266 (555)
                      .+...  +.+.+....+|+.+.+... +.......+..+..++.+.+..+..  .+....|..+..++.+......+   
T Consensus       217 ~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---  288 (394)
T 4fs7_A          217 NSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---  288 (394)
T ss_dssp             TTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---
T ss_pred             CCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee---
Confidence            65432  2233344578888888654 3334556788889999999987643  35556788889999888776543   


Q ss_pred             ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254          267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC  346 (555)
Q Consensus       267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  346 (555)
                      ...++..+.+|+.+.+..+ +        ..+..-.|.+|.+|+.+++..+ ++.....++     .++.+|+.+.+..+
T Consensus       289 ~~~~F~~~~~L~~i~l~~~-i--------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF-----~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          289 PEKTFYGCSSLTEVKLLDS-V--------KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF-----RGCTSLSNINFPLS  353 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-C--------CEECTTTTTTCTTCCEECCCTT-CCEECTTTT-----TTCTTCCEECCCTT
T ss_pred             ccccccccccccccccccc-c--------ceechhhhcCCCCCCEEEeCCc-ccEEhHHhc-----cCCCCCCEEEECcc
Confidence            3456788899999988654 2        2344456888999999998754 555544444     77889999999776


Q ss_pred             ccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEE
Q 040254          347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYF  389 (555)
Q Consensus       347 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  389 (555)
                       ++.....+|.+|.+|+.+++..+ +. .+..+|.++++|+.+
T Consensus       354 -l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          354 -LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             -CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             -ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence             66566789999999999999865 33 345678899998876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=6.2e-16  Score=161.31  Aligned_cols=198  Identities=17%  Similarity=0.185  Sum_probs=144.4

Q ss_pred             ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCc-------------CccccCCCCccccccCCCCCccEEE-
Q 040254           47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNS-------------LSGELTGLIPSLAWNHSFCSMRLLD-  112 (555)
Q Consensus        47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-------------i~~~~~~~~~~~~~~~~~~~L~~L~-  112 (555)
                      +..+++|+.|+|++|.+. .+|.. +..+++|++|++++|.             +.+..|..+..      +++|+.|+ 
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~------l~~L~~L~~  416 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY------FSTLKAVDP  416 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH------HHHHHHHCG
T ss_pred             cccCccceeccCChhhHH-hhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH------HHhcccCcc
Confidence            467899999999999998 78865 5669999999997764             33333333322      33666666 


Q ss_pred             ccCCcCCccCCc------cccC--CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEE
Q 040254          113 FSYNDFSSQVPP------RLGN--CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLE  184 (555)
Q Consensus       113 ls~n~l~~~~~~------~~~~--l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  184 (555)
                      ++.|.+.. ++.      .+..  ...|++|++++|.+.+ +|. +..+++|++|++++|.++. .|..+..+++|+.|+
T Consensus       417 l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~  492 (567)
T 1dce_A          417 MRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQ  492 (567)
T ss_dssp             GGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEE
T ss_pred             hhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEE
Confidence            44443321 110      0000  1258899999887765 565 8889999999999999985 567889999999999


Q ss_pred             cccCccccCCCcCccCCCCCCeeeCccCcCcccC-CccccCCCCCCEEECcCccCccccCc--ccccCCCCCcEEEc
Q 040254          185 LYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSL-PSSMMNCTNLKTLNLMGNLFAGNLSA--YNFSVLSQLETIDL  258 (555)
Q Consensus       185 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l  258 (555)
                      +++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|++|++++|.+.+..+.  ..+..+++|+.|++
T Consensus       493 Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          493 ASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999876 55 7888999999999999998665 88899999999999999988754331  12344788888864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=4.6e-14  Score=126.00  Aligned_cols=92  Identities=24%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             HhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCC
Q 040254          148 DDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTN  227 (555)
Q Consensus       148 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~  227 (555)
                      ..|.++++|++|++++|.++.+.+..|.++++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++
T Consensus        48 ~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  127 (193)
T 2wfh_A           48 KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA  127 (193)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc
Confidence            33444444444444444444444444444444444444444444444444555555555555555555333334455555


Q ss_pred             CCEEECcCccCc
Q 040254          228 LKTLNLMGNLFA  239 (555)
Q Consensus       228 L~~L~l~~n~l~  239 (555)
                      |++|++++|++.
T Consensus       128 L~~L~L~~N~~~  139 (193)
T 2wfh_A          128 LSHLAIGANPLY  139 (193)
T ss_dssp             CCEEECCSSCEE
T ss_pred             ccEEEeCCCCee
Confidence            555555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=2.7e-15  Score=161.51  Aligned_cols=150  Identities=24%  Similarity=0.316  Sum_probs=85.3

Q ss_pred             CCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCC
Q 040254          307 KNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSL  386 (555)
Q Consensus       307 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  386 (555)
                      ++|+.|++++|.++.++ ..+     ..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|
T Consensus       247 ~~L~~L~Ls~N~l~~lp-~~~-----~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L  318 (727)
T 4b8c_D          247 DFLTRLYLNGNSLTELP-AEI-----KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL  318 (727)
T ss_dssp             CSCSCCBCTTSCCSCCC-GGG-----GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC
T ss_pred             CCCCEEEeeCCcCcccC-hhh-----hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc
Confidence            34555555555555222 212     45678899999999998 67888999999999999999998 677789999999


Q ss_pred             cEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccC
Q 040254          387 FYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ  466 (555)
Q Consensus       387 ~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~  466 (555)
                      ++|+|++|++++.+|..+..+....+                                   .+++++|.+++.+|..   
T Consensus       319 ~~L~L~~N~l~~~~p~~~~~~~~~~~-----------------------------------~l~l~~N~l~~~~p~~---  360 (727)
T 4b8c_D          319 QFLGVEGNPLEKQFLKILTEKSVTGL-----------------------------------IFYLRDNRPEIPLPHE---  360 (727)
T ss_dssp             CCEECTTSCCCSHHHHHHHHHHHHHH-----------------------------------HHHHHHCCCCCCCCCC---
T ss_pred             cEEeCCCCccCCCChHHHhhcchhhh-----------------------------------HHhhccCcccCcCccc---
Confidence            99999999999888877765432221                                   1556667776666543   


Q ss_pred             CCCCCeeeCCCc--------cceeecchhhhCCccCCeeeCCCCCCC
Q 040254          467 LKFLNVLDLGNN--------NFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       467 l~~L~~L~Ls~N--------~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                         |+.|++++|        .+++..+..+..+..+....+++|-+.
T Consensus       361 ---l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          361 ---RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --------------------------------------------CCC
T ss_pred             ---cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence               555666666        333334444445555566666666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=4.6e-14  Score=124.41  Aligned_cols=128  Identities=24%  Similarity=0.268  Sum_probs=78.3

Q ss_pred             cEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCC
Q 040254          339 RAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFN  418 (555)
Q Consensus       339 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~  418 (555)
                      +.+++++++++ .+|..+  .++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..++.|.       
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-------   79 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT-------   79 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC-------
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccC-------
Confidence            45555555554 233222  24566666666666654445556666666666666666644444444544444       


Q ss_pred             CCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeee
Q 040254          419 RNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLD  498 (555)
Q Consensus       419 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  498 (555)
                                                   .|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        80 -----------------------------~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           80 -----------------------------ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             -----------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             -----------------------------EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence                                         366666666655555566777778888888877755555567777788888


Q ss_pred             CCCCCCC
Q 040254          499 LSKNHLS  505 (555)
Q Consensus       499 Ls~N~l~  505 (555)
                      +++|+++
T Consensus       131 l~~N~~~  137 (177)
T 2o6r_A          131 LHTNPWD  137 (177)
T ss_dssp             CCSSCBC
T ss_pred             ecCCCee
Confidence            8887775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=2.1e-14  Score=122.66  Aligned_cols=127  Identities=20%  Similarity=0.227  Sum_probs=70.3

Q ss_pred             CCCCEEEccCCcCc-cccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254           76 TLLEIIDLSYNSLS-GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA  154 (555)
Q Consensus        76 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~  154 (555)
                      ++|++|++++|.++ +..|..+.      .+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTD------EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCT------TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             ccCeEEEccCCcCChhHHHHHHh------hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence            44555555555554 23332222      233566666666655542  4455666666666666665555555555566


Q ss_pred             CCCeeEeecccCcccc-cccccCCCCCcEEEcccCccccCCC---cCccCCCCCCeeeCc
Q 040254          155 SLEEPSLHFNKLSGFI-SNDIINLTSLLVLELYSKELIGSIP---RDIGKLTNLKYLLLY  210 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~  210 (555)
                      +|++|++++|.+++.. +..+..+++|++|++++|.+.+..+   ..+..+++|++|+++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666666666665532 2455666666666666666654433   245555666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=7.1e-14  Score=123.18  Aligned_cols=110  Identities=22%  Similarity=0.253  Sum_probs=58.7

Q ss_pred             CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCC
Q 040254           51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCS  130 (555)
Q Consensus        51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  130 (555)
                      ++|++|++++|.+. .++...|..+++|++|++++|++++..+..+.      .+++|++|++++|.+++..+..+..++
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~N~l~~~~~~~~~~l~  100 (177)
T 2o6r_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD------KLTKLTILYLHENKLQSLPNGVFDKLT  100 (177)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT------TCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHcc------CCCccCEEECCCCCccccCHHHhhCCc
Confidence            46666777666666 55555566666666666666666644433333      233566666666655544444445555


Q ss_pred             CCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCc
Q 040254          131 RLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS  167 (555)
Q Consensus       131 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~  167 (555)
                      +|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus       101 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            5555555555444333323344444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=1.1e-13  Score=121.72  Aligned_cols=131  Identities=22%  Similarity=0.205  Sum_probs=90.1

Q ss_pred             CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254          334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE  413 (555)
Q Consensus       334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~  413 (555)
                      .+++|+.|++++|+++ .++......++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+..|.  
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~--   91 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT--   91 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC--
T ss_pred             CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC--
Confidence            3556777777777766 3343333334777777777777744  4567777777777777777754434445565555  


Q ss_pred             hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCCh--hccCCCCCCeeeCCCccceeecch----h
Q 040254          414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPA--ETGQLKFLNVLDLGNNNFAGSIPN----Q  487 (555)
Q Consensus       414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~  487 (555)
                                                        .|++++|+++ .+|.  .+..+++|++|++++|.++ .+|.    .
T Consensus        92 ----------------------------------~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~  135 (176)
T 1a9n_A           92 ----------------------------------ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYV  135 (176)
T ss_dssp             ----------------------------------EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHH
T ss_pred             ----------------------------------EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHH
Confidence                                              4777777775 3444  6778888899999999888 4555    3


Q ss_pred             hhCCccCCeeeCCCCCCC
Q 040254          488 ISQLTILERLDLSKNHLS  505 (555)
Q Consensus       488 l~~l~~L~~L~Ls~N~l~  505 (555)
                      +..+++|+.||+++|.+.
T Consensus       136 ~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          136 IYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHHCTTCSEETTEECCHH
T ss_pred             HHHCCccceeCCCcCCHH
Confidence            788889999999888875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.2e-13  Score=121.52  Aligned_cols=133  Identities=16%  Similarity=0.089  Sum_probs=70.4

Q ss_pred             cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254           46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR  125 (555)
Q Consensus        46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  125 (555)
                      .+.++++|++|++++|.+. .++. .....++|++|++++|++++.  ..+.      .+++|++|++++|.+++..+..
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~------~l~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFP------LLRRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCC------CCSSCCEEECCSSCCCEECSCH
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccc------cCCCCCEEECCCCcccccCcch
Confidence            4556677777777777776 4543 333334677777777766643  2222      3446666666666666433333


Q ss_pred             ccCCCCCcEEEccCCCCCCCCcH--hhhcCCCCCeeEeecccCcccccc---cccCCCCCcEEEcccCc
Q 040254          126 LGNCSRLKSFQAGYSNLLRSLPD--DIYAAASLEEPSLHFNKLSGFISN---DIINLTSLLVLELYSKE  189 (555)
Q Consensus       126 ~~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~  189 (555)
                      +..+++|++|++++|.+. .+|.  .+..+++|++|++++|.++.....   .+..+++|+.|++++|.
T Consensus        84 ~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            455666666666655542 2333  444555555555555555432211   24444444444444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.42  E-value=2.2e-11  Score=121.79  Aligned_cols=162  Identities=10%  Similarity=0.048  Sum_probs=105.3

Q ss_pred             ccccCCccccCCC-CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCc---CccccCCCCccccccCCCCCccEEEcc
Q 040254           39 VQRYHLPSIGNLT-HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNS---LSGELTGLIPSLAWNHSFCSMRLLDFS  114 (555)
Q Consensus        39 i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~~~~~~~~~~L~~L~ls  114 (555)
                      ++.....+|.++. .|+.+.+..+ ++ .|...+|.+|++|+.+.++.+.   ++......|.      .+.+|+.+.+.
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~------~c~~L~~i~~~  122 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFM------FCSELTDIPIL  122 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTT------TCTTCCBCGGG
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhch------hcccceeeccC
Confidence            4556667888884 5999999765 55 7888999999999999998763   4433333333      33467776665


Q ss_pred             CCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCC
Q 040254          115 YNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSI  194 (555)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~  194 (555)
                      .+ ++.+...+|.++.+|+.+.+.. .....-...|..+..|+.+.+..+ ++.+...+|.+ ..|+.+.+..+.. ...
T Consensus       123 ~~-~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~  197 (394)
T 4gt6_A          123 DS-VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIG  197 (394)
T ss_dssp             TT-CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EEC
T ss_pred             Cc-cceehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccc
Confidence            54 4445556778888888888863 334444456777778888777654 45555555654 5677777754432 344


Q ss_pred             CcCccCCCCCCeeeCccCc
Q 040254          195 PRDIGKLTNLKYLLLYRNN  213 (555)
Q Consensus       195 ~~~l~~l~~L~~L~L~~n~  213 (555)
                      ..+|..+.+++........
T Consensus       198 ~~af~~c~~l~~~~~~~~~  216 (394)
T 4gt6_A          198 TNAFSECFALSTITSDSES  216 (394)
T ss_dssp             TTTTTTCTTCCEEEECCSS
T ss_pred             cchhhhccccceecccccc
Confidence            4556667777666655443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=1.6e-12  Score=113.46  Aligned_cols=57  Identities=23%  Similarity=0.203  Sum_probs=38.7

Q ss_pred             EEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       449 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      |++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+++
T Consensus        59 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           59 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            555555555444445666777777777777777666666777777777777777775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.37  E-value=8.5e-11  Score=117.54  Aligned_cols=128  Identities=15%  Similarity=0.130  Sum_probs=59.6

Q ss_pred             CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254          334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE  413 (555)
Q Consensus       334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~  413 (555)
                      .+..|+.+.+..+... ....+|..++.|+.+.+. +.+..+...+|.+|.+|+.++|..+ ++.....+|.++..|.  
T Consensus       263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~--  337 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE--  337 (394)
T ss_dssp             TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC--
T ss_pred             ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC--
Confidence            3444555555433222 334455555666666654 2333344455666666666666543 3323333444444443  


Q ss_pred             hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCcc
Q 040254          414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTI  493 (555)
Q Consensus       414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  493 (555)
                                                        ++.+..+ ++.....+|.++++|+.+++.++...  + ..+....+
T Consensus       338 ----------------------------------~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~  379 (394)
T 4gt6_A          338 ----------------------------------RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--W-NAISTDSG  379 (394)
T ss_dssp             ----------------------------------EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--H-HTCBCCCC
T ss_pred             ----------------------------------EEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--h-hhhhccCC
Confidence                                              2444322 44344556777777777777776543  1 34556667


Q ss_pred             CCeeeCCCCCC
Q 040254          494 LERLDLSKNHL  504 (555)
Q Consensus       494 L~~L~Ls~N~l  504 (555)
                      |+.+.+..|.+
T Consensus       380 L~~i~i~~~~~  390 (394)
T 4gt6_A          380 LQNLPVAPGSI  390 (394)
T ss_dssp             C----------
T ss_pred             CCEEEeCCCCE
Confidence            77777666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=9.1e-15  Score=131.48  Aligned_cols=112  Identities=17%  Similarity=0.213  Sum_probs=61.1

Q ss_pred             HHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhh
Q 040254           71 SFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDI  150 (555)
Q Consensus        71 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~  150 (555)
                      .|..+++|++|++++|++++. + .+.      .+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +| .+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l-~-~~~------~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~  111 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKI-S-SLS------GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI  111 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCC-C-CHH------HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HH
T ss_pred             HHhcCCCCCEEECCCCCCccc-c-ccc------cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cc
Confidence            355566666666666666541 1 222      2336666666666665 345555555566666666555443 23 45


Q ss_pred             hcCCCCCeeEeecccCccccc-ccccCCCCCcEEEcccCccccC
Q 040254          151 YAAASLEEPSLHFNKLSGFIS-NDIINLTSLLVLELYSKELIGS  193 (555)
Q Consensus       151 ~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~  193 (555)
                      ..+++|++|++++|.++.... ..+..+++|++|++++|.+.+.
T Consensus       112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            555666666666666654332 3455556666666666655443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=2.9e-12  Score=112.11  Aligned_cols=57  Identities=21%  Similarity=0.292  Sum_probs=38.7

Q ss_pred             EEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       449 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      |+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++.
T Consensus        62 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           62 LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             EECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            555555555444444566777777777777777555555777777777777777775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=1.6e-14  Score=129.90  Aligned_cols=130  Identities=20%  Similarity=0.265  Sum_probs=89.6

Q ss_pred             CCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchh
Q 040254          333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVI  412 (555)
Q Consensus       333 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  412 (555)
                      ..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..++.|. 
T Consensus        45 ~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~-  118 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR-  118 (198)
T ss_dssp             HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS-
T ss_pred             hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC-
Confidence            445677777777777764 45 6677777888888877777 556666666778888888887774 33 455555554 


Q ss_pred             hhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCC-hhccCCCCCCeeeCCCccceeecch-----
Q 040254          413 EQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIP-AETGQLKFLNVLDLGNNNFAGSIPN-----  486 (555)
Q Consensus       413 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-----  486 (555)
                                                         .|++++|++++..+ ..+..+++|++|++++|.+++.+|.     
T Consensus       119 -----------------------------------~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  163 (198)
T 1ds9_A          119 -----------------------------------VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS  163 (198)
T ss_dssp             -----------------------------------EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred             -----------------------------------EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchH
Confidence                                               47777777774322 4677788888888888888766554     


Q ss_pred             -----hhhCCccCCeeeCCCCCCC
Q 040254          487 -----QISQLTILERLDLSKNHLS  505 (555)
Q Consensus       487 -----~l~~l~~L~~L~Ls~N~l~  505 (555)
                           .+..+++|+.||  +|.++
T Consensus       164 ~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          164 EYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHHHHhCCCcEEEC--CcccC
Confidence                 267788888876  66654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.1e-11  Score=108.36  Aligned_cols=116  Identities=20%  Similarity=0.175  Sum_probs=78.8

Q ss_pred             CCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccC
Q 040254            6 AAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSY   85 (555)
Q Consensus         6 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   85 (555)
                      .++..+|.|...             .++++++.+ +.+|..+.  ++|++|+|++|.+. .+++..|..+++|++|+|++
T Consensus         4 ~~CP~~C~C~~~-------------~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~   66 (174)
T 2r9u_A            4 AGCPSQCSCDQT-------------LVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNS   66 (174)
T ss_dssp             CSSCTTSEECSS-------------EEECCSSCC-SSCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCCEECCc-------------EEEeCCCCC-CccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCC
Confidence            355666666432             234444555 45565554  68888888888887 56666777788888888888


Q ss_pred             CcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCC
Q 040254           86 NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR  144 (555)
Q Consensus        86 n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~  144 (555)
                      |+|++..+..|..      +++|++|++++|++++..+..|..+++|++|++++|.+..
T Consensus        67 N~l~~i~~~~~~~------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           67 NKLTAIPTGVFDK------LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCCCccChhHhCC------cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            8888665544443      4478888888888876555557777888888887776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=1.1e-11  Score=108.02  Aligned_cols=32  Identities=13%  Similarity=0.181  Sum_probs=11.9

Q ss_pred             ccEEEccCCcCCccCCccccCCCCCcEEEccC
Q 040254          108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGY  139 (555)
Q Consensus       108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~  139 (555)
                      |++|++++|.+++..+..|.++++|++|++++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~   63 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN   63 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCC
Confidence            33344444333333333333333333333333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=8.1e-13  Score=130.43  Aligned_cols=117  Identities=17%  Similarity=0.093  Sum_probs=57.9

Q ss_pred             CCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccc
Q 040254          274 CRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVP  353 (555)
Q Consensus       274 ~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  353 (555)
                      .+.|+.|++++|.++......+...   ....+++|+.|++++|.++......+    ...+++|+.|++++|.++....
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~---L~~~~~~L~~L~Ls~n~l~~~~~~~l----~~~L~~L~~L~Ls~n~l~~~~~  143 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAV---LGSGRHALDEVNLASCQLDPAGLRTL----LPVFLRARKLGLQLNSLGPEAC  143 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHH---HSSCSSCEEEEECTTCCCCHHHHHHT----HHHHHTEEEEECCSSCCCHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHH---HhhCCCCceEEEecCCCCCHHHHHHH----HHHHHhccHhhcCCCCCCHHHH
Confidence            3567788888887764333333321   11223466666666665543221111    1223455666666665543322


Q ss_pred             hhh-----hCCCCCcEEEccCCccccc----cCccccCCCCCcEEEccCccCc
Q 040254          354 LWL-----SKLTKLEVLLLSGNQITGS----IPGWFGNLPSLFYFALSQNNIS  397 (555)
Q Consensus       354 ~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  397 (555)
                      ..+     ...+.|++|+|++|.+++.    ++..+..+++|++|+|++|.++
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            222     1245566666666655432    2223345555666666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=7.9e-13  Score=130.51  Aligned_cols=164  Identities=14%  Similarity=0.093  Sum_probs=91.5

Q ss_pred             CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc-cCCCCCcEEEccCCCCCCCCcHhh---
Q 040254           75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL-GNCSRLKSFQAGYSNLLRSLPDDI---  150 (555)
Q Consensus        75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~---  150 (555)
                      ++.|++|+|++|.++......+..... ...++|++|+|++|.+++.....+ ..+++|++|+|++|.+.......+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLG-SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHS-SCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHh-hCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            455666666666665433333322211 012366666666666654222222 234566677777666543322222   


Q ss_pred             --hcCCCCCeeEeecccCcccc----cccccCCCCCcEEEcccCccccCC----CcCccCCCCCCeeeCccCcCccc---
Q 040254          151 --YAAASLEEPSLHFNKLSGFI----SNDIINLTSLLVLELYSKELIGSI----PRDIGKLTNLKYLLLYRNNLSGS---  217 (555)
Q Consensus       151 --~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~---  217 (555)
                        ...+.|++|++++|.++...    +..+..+++|++|++++|.+....    ...+...++|+.|+|++|.++..   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              13466777777777665422    223456677777777777765322    33455566777778777777632   


Q ss_pred             -CCccccCCCCCCEEECcCccCc
Q 040254          218 -LPSSMMNCTNLKTLNLMGNLFA  239 (555)
Q Consensus       218 -~~~~l~~~~~L~~L~l~~n~l~  239 (555)
                       ++..+...++|++|++++|.+.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHhCCCCCEEeccCCCCC
Confidence             2333445677888888888776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.19  E-value=4e-09  Score=104.81  Aligned_cols=314  Identities=12%  Similarity=0.069  Sum_probs=165.2

Q ss_pred             ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254           47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL  126 (555)
Q Consensus        47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  126 (555)
                      +....+|+.+.+... ++ .|+..+|.+|.+|+.+++..+ ++.+....|.       -++|+.+.+..+ ++.+...+|
T Consensus        42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~-------~c~l~~i~~~~~-l~~I~~~aF  110 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFA-------DTKLQSYTGMER-VKKFGDYVF  110 (379)
T ss_dssp             GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTT-------TCCCCEEEECTT-CCEECTTTT
T ss_pred             cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhc-------CCCCceEECCce-eeEecccee
Confidence            445567888888654 54 677888888888888888653 4444434442       135777776644 444444556


Q ss_pred             cCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCe
Q 040254          127 GNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKY  206 (555)
Q Consensus       127 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  206 (555)
                      ..+ +|+.+.+..+ ....-...|.+ ..++.+.+..+ ++.+....|..+.+++...+............+.       
T Consensus       111 ~~~-~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-------  179 (379)
T 4h09_A          111 QGT-DLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-------  179 (379)
T ss_dssp             TTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-------
T ss_pred             ccC-CcccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeeccccee-------
Confidence            554 7888888743 33222233433 45666665543 4555566777888888877755433211110000       


Q ss_pred             eeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccce
Q 040254          207 LLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQ  286 (555)
Q Consensus       207 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  286 (555)
                          .+... .....+.....+..+.+.....  ......+.....++.+.+..+ +......++..+..|+.+.+..+ 
T Consensus       180 ----~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-  250 (379)
T 4h09_A          180 ----YNKNK-TILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-  250 (379)
T ss_dssp             ----EETTS-SEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-
T ss_pred             ----ccccc-ceecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-
Confidence                00000 1111222333344444332211  122233444455555555433 22233444555555555554332 


Q ss_pred             ecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEE
Q 040254          287 LEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLL  366 (555)
Q Consensus       287 ~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  366 (555)
                              +..+....+.+|..|+.+.+..+ +.......+     ..+.+|+.+.+.++.++.....+|.+|.+|+.+.
T Consensus       251 --------v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF-----~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~  316 (379)
T 4h09_A          251 --------VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC-----SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT  316 (379)
T ss_dssp             --------CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT-----TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             --------ccEeCccccceeehhcccccccc-ceecccccc-----ccccccccccccccccceehhhhhcCCCCCCEEE
Confidence                    11222334555556666655432 222222222     5566777777776666655566777777788877


Q ss_pred             ccCCccccccCccccCCCCCcEEEccCccCccccchhhhcc
Q 040254          367 LSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRL  407 (555)
Q Consensus       367 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  407 (555)
                      +..+ ++.+...+|.+|.+|+.+.+..+ ++..-..+|.+.
T Consensus       317 lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          317 LPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             cCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            7654 55455667777778877777644 443334455444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.10  E-value=8.4e-09  Score=102.47  Aligned_cols=304  Identities=13%  Similarity=0.086  Sum_probs=204.2

Q ss_pred             CCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC
Q 040254           37 KLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN  116 (555)
Q Consensus        37 ~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n  116 (555)
                      .+++.....+|.+|.+|+.++|..+ +. .|...+|.++ +|+.+.+..+ ++......|       ..++|+.+.+..+
T Consensus        55 ~~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF-------~~~~L~~i~lp~~  123 (379)
T 4h09_A           55 SGITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVF-------QGTDLDDFEFPGA  123 (379)
T ss_dssp             TTEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTT-------TTCCCSEEECCTT
T ss_pred             CCccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEecccee-------ccCCcccccCCCc
Confidence            5677777889999999999999765 65 7888999987 6888777643 443333333       2347999999875


Q ss_pred             cCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCc
Q 040254          117 DFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPR  196 (555)
Q Consensus       117 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  196 (555)
                       ++.....+|.++ .++.+.+.. .+...-...|.....++...+............+.. .        ..   .....
T Consensus       124 -~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~-~--------~~---~~~~~  188 (379)
T 4h09_A          124 -TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY-N--------KN---KTILE  188 (379)
T ss_dssp             -CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE-E--------TT---SSEEE
T ss_pred             -cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceec-c--------cc---cceec
Confidence             333444556655 577777653 344444556777888888887765433221111110 0        00   11112


Q ss_pred             CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCC
Q 040254          197 DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRL  276 (555)
Q Consensus       197 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~  276 (555)
                      .+.....+..+.+....-. .....+..+..|+.+.+..+ +. .+....|.++..|+.+.+..+ ++.....++..+.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~  264 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA  264 (379)
T ss_dssp             ECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred             cccccccccccccccceeE-Eeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence            3344455666655443322 44556777788999988765 22 455567888999999999765 55566778888999


Q ss_pred             CcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhh
Q 040254          277 LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL  356 (555)
Q Consensus       277 L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l  356 (555)
                      |+.+.+..+ +        ..+....|.+|.+|+.+.+..+.++.....++     ..+.+|+.+.+..+ ++.....+|
T Consensus       265 l~~i~l~~~-i--------~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF-----~~c~~L~~i~lp~~-l~~I~~~aF  329 (379)
T 4h09_A          265 LKTLNFYAK-V--------KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF-----MDCVKLSSVTLPTA-LKTIQVYAF  329 (379)
T ss_dssp             CCEEEECCC-C--------SEECTTTTTTCTTCCEEEECCTTCCEECTTTT-----TTCTTCCEEECCTT-CCEECTTTT
T ss_pred             hcccccccc-c--------eeccccccccccccccccccccccceehhhhh-----cCCCCCCEEEcCcc-ccEEHHHHh
Confidence            999887543 2        23444568889999999998887777766655     77889999999754 555667889


Q ss_pred             hCCCCCcEEEccCCccccccCccccCCCCC
Q 040254          357 SKLTKLEVLLLSGNQITGSIPGWFGNLPSL  386 (555)
Q Consensus       357 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  386 (555)
                      .+|.+|+.+.+..+ ++.+...+|.++..+
T Consensus       330 ~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          330 KNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             TTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             hCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            99999999999765 665666778776443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=2.2e-10  Score=112.53  Aligned_cols=104  Identities=15%  Similarity=0.096  Sum_probs=66.7

Q ss_pred             cEEEccCc-ccccccchhhhCCCCCcEEEccC-CccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhcc
Q 040254          339 RAVSLAGC-QLTGQVPLWLSKLTKLEVLLLSG-NQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNK  416 (555)
Q Consensus       339 ~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~  416 (555)
                      ..++.+++ +++ .+|. +..+++|++|+|++ |++.+..+..|..+++|++|+|++|++++..|..|.+++.|.     
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~-----   83 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS-----   83 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC-----
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC-----
Confidence            34566666 666 4555 66777777777775 777766666677777777777777777766666666666555     


Q ss_pred             CCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccce
Q 040254          417 FNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFA  481 (555)
Q Consensus       417 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  481 (555)
                                                     .|+|++|+|++..+..|..++ |++|+|++|.+.
T Consensus        84 -------------------------------~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           84 -------------------------------RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             -------------------------------EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             -------------------------------EEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence                                           366666666654444444444 666666666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=2.4e-10  Score=112.24  Aligned_cols=97  Identities=13%  Similarity=0.114  Sum_probs=80.2

Q ss_pred             CccccCCccccCCCCCCEEEccC-CcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC
Q 040254           38 LVQRYHLPSIGNLTHISHLNLSH-NHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN  116 (555)
Q Consensus        38 ~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n  116 (555)
                      ++++ +|. |..+++|++|+|++ |.+. .++...|..+++|++|+|++|+|++..+..|..      +++|++|+|++|
T Consensus        20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------l~~L~~L~l~~N   90 (347)
T 2ifg_A           20 ALDS-LHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF------TPRLSRLNLSFN   90 (347)
T ss_dssp             CCTT-TTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGS------CSCCCEEECCSS
T ss_pred             CCCc-cCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcC------CcCCCEEeCCCC
Confidence            5654 777 99999999999996 9998 788888999999999999999999887777654      458999999999


Q ss_pred             cCCccCCccccCCCCCcEEEccCCCCCC
Q 040254          117 DFSSQVPPRLGNCSRLKSFQAGYSNLLR  144 (555)
Q Consensus       117 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~  144 (555)
                      ++++..+..+..+. |++|++.+|.+..
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            99975555666555 9999999887654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=7.7e-09  Score=101.03  Aligned_cols=72  Identities=22%  Similarity=0.314  Sum_probs=49.2

Q ss_pred             CCCCccEEEccCcccccccchhhh---CCCCCcEEEccCCccccc----cCccccCCCCCcEEEccCccCccccchhhh
Q 040254          334 GFQNLRAVSLAGCQLTGQVPLWLS---KLTKLEVLLLSGNQITGS----IPGWFGNLPSLFYFALSQNNISGEFPKELS  405 (555)
Q Consensus       334 ~~~~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  405 (555)
                      .+|+|+.|++.+|.+....+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence            467888888888877643333332   467889999998888764    233345578899999999888754444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.58  E-value=4.6e-08  Score=95.51  Aligned_cols=65  Identities=22%  Similarity=0.243  Sum_probs=32.5

Q ss_pred             CCCCCEEECcCccCccccCcccc--cCCCCCcEEEcccccccccccc----cccCCCCCcEEEcccceecc
Q 040254          225 CTNLKTLNLMGNLFAGNLSAYNF--SVLSQLETIDLYINMFTGSFLL----TLTSCRLLTALRLACNQLEG  289 (555)
Q Consensus       225 ~~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~n~~~~  289 (555)
                      +++|++|++.+|.+.+......+  ..+++|++|+++.|.+.+....    .+..+++|+.|+++.|.++.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            45666666666555422111111  2345666666666665543222    22334666666666665543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=3.7e-08  Score=86.76  Aligned_cols=117  Identities=14%  Similarity=0.091  Sum_probs=67.5

Q ss_pred             chhhhCCCCCcEEEccCC-ccccc----cCccccCCCCCcEEEccCccCccccc----hhhhccccchhhhccCCCCCCC
Q 040254          353 PLWLSKLTKLEVLLLSGN-QITGS----IPGWFGNLPSLFYFALSQNNISGEFP----KELSRLQPLVIEQNKFNRNKPD  423 (555)
Q Consensus       353 ~~~l~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~~~~~~~~~~~~  423 (555)
                      ...+...+.|++|+|++| .+.+.    +...+...++|++|+|++|.+.....    ..+...+.|.            
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~------------   96 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK------------   96 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC------------
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC------------
Confidence            344555566666666666 55532    23334455666666666666653211    2222222222            


Q ss_pred             CCccccCCCcccccccccccCCCCEEEccCcccccc----CChhccCCCCCCeeeC--CCccceee----cchhhhCCcc
Q 040254          424 LPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR----IPAETGQLKFLNVLDL--GNNNFAGS----IPNQISQLTI  493 (555)
Q Consensus       424 l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~----~~~~l~~l~~  493 (555)
                                              +|+|++|.+...    +...+...++|++|+|  ++|.|++.    +.+.+...++
T Consensus        97 ------------------------~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~  152 (185)
T 1io0_A           97 ------------------------SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT  152 (185)
T ss_dssp             ------------------------EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSS
T ss_pred             ------------------------EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCC
Confidence                                    466666666542    2344566677888888  77888744    3345556678


Q ss_pred             CCeeeCCCCCCC
Q 040254          494 LERLDLSKNHLS  505 (555)
Q Consensus       494 L~~L~Ls~N~l~  505 (555)
                      |++|+|++|.|.
T Consensus       153 L~~L~L~~n~i~  164 (185)
T 1io0_A          153 LLKFGYHFTQQG  164 (185)
T ss_dssp             CCEEECCCSSHH
T ss_pred             cCEEeccCCCCC
Confidence            888888888774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=3.8e-08  Score=86.65  Aligned_cols=92  Identities=11%  Similarity=0.077  Sum_probs=41.4

Q ss_pred             CccccCCCCCCEEEccCC-cCcCcC---chhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCC
Q 040254           44 LPSIGNLTHISHLNLSHN-HVHGPL---PINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFS  119 (555)
Q Consensus        44 ~~~~~~l~~L~~L~L~~n-~~~~~i---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~  119 (555)
                      ...+...+.|++|+|++| .+.+.-   -...+...+.|++|+|++|.|.+.....+.....  ..+.|++|+|++|.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HCSSCCEEECCSSCCC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--hCCCcCEEECcCCcCC
Confidence            334555666666666666 554210   1122334455666666666555332222221110  2234555555555554


Q ss_pred             cc----CCccccCCCCCcEEEc
Q 040254          120 SQ----VPPRLGNCSRLKSFQA  137 (555)
Q Consensus       120 ~~----~~~~~~~l~~L~~L~L  137 (555)
                      +.    +..++...+.|++|++
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHHHHHHhCCCceEEEe
Confidence            31    2233344444455544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.08  E-value=8.1e-07  Score=82.16  Aligned_cols=41  Identities=24%  Similarity=0.341  Sum_probs=25.6

Q ss_pred             hCCCCCcEEEccCCcccc--ccCccccCCCCCcEEEccCccCc
Q 040254          357 SKLTKLEVLLLSGNQITG--SIPGWFGNLPSLFYFALSQNNIS  397 (555)
Q Consensus       357 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~  397 (555)
                      ..++.|+.|+|++|++++  .++..+..+++|+.|+|++|++.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            446667777777776664  23344556666666666666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.07  E-value=4.9e-06  Score=76.89  Aligned_cols=109  Identities=13%  Similarity=0.060  Sum_probs=69.5

Q ss_pred             ccCCCCCCE--EEccCCcCcCcCc---hhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc
Q 040254           47 IGNLTHISH--LNLSHNHVHGPLP---INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ  121 (555)
Q Consensus        47 ~~~l~~L~~--L~L~~n~~~~~i~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  121 (555)
                      |...+.|+.  ++++.|... .++   ..+..++++|++|+|++|+|++..  .++...  ..+++|++|+|++|.+++.
T Consensus       137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~--~l~~~~--~~l~~L~~L~Ls~N~i~~~  211 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLD--DMSSIV--QKAPNLKILNLSGNELKSE  211 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCG--GGTTHH--HHSTTCCEEECTTSCCCSG
T ss_pred             cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCc--cchhHH--hhCCCCCEEECCCCccCCc
Confidence            455555555  677777433 222   223456889999999999888632  122111  1456899999999988863


Q ss_pred             -CCccccCCCCCcEEEccCCCCCCCCc-------HhhhcCCCCCeeEe
Q 040254          122 -VPPRLGNCSRLKSFQAGYSNLLRSLP-------DDIYAAASLEEPSL  161 (555)
Q Consensus       122 -~~~~~~~l~~L~~L~L~~~~~~~~~~-------~~~~~l~~L~~L~l  161 (555)
                       ....+..+ +|++|+|++|.+.+.+|       ..+..+++|+.||-
T Consensus       212 ~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          212 RELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             hhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence             11223334 89999999888776544       24667888887763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=5.1e-06  Score=71.10  Aligned_cols=83  Identities=8%  Similarity=-0.024  Sum_probs=52.3

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCC-CCCcHhhhcC----CCCCeeEeeccc-CcccccccccCCCCC
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLL-RSLPDDIYAA----ASLEEPSLHFNK-LSGFISNDIINLTSL  180 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~~~~l~~L  180 (555)
                      +|++||++++.++...-..+.++++|++|+|++|... ..--..+..+    ++|++|++++|. ++......+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            5777777777766544455677777888888777533 2222234433    357777777764 665444556667777


Q ss_pred             cEEEcccCc
Q 040254          181 LVLELYSKE  189 (555)
Q Consensus       181 ~~L~L~~n~  189 (555)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777777765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=2.8e-06  Score=72.69  Aligned_cols=100  Identities=11%  Similarity=0.018  Sum_probs=59.0

Q ss_pred             cCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCc-CccccCCCCccccccCCCCCccEEEccCCc-CC
Q 040254           42 YHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNS-LSGELTGLIPSLAWNHSFCSMRLLDFSYND-FS  119 (555)
Q Consensus        42 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~  119 (555)
                      .+|.....-.+|++||++++.++ +.....+..+++|++|+|++|. |++.....+....  ...++|++|++++|. ++
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~It-d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~--~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIM-SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE--NLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCC-GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH--HHHHHCCEEEEESCTTCC
T ss_pred             cCCcccCCCceEeEEeCcCCCcc-HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc--cccCCCCEEEcCCCCcCC
Confidence            33443333347888888888776 3433445678888888888874 6643222222110  001257788887774 66


Q ss_pred             ccCCccccCCCCCcEEEccCCCCCC
Q 040254          120 SQVPPRLGNCSRLKSFQAGYSNLLR  144 (555)
Q Consensus       120 ~~~~~~~~~l~~L~~L~L~~~~~~~  144 (555)
                      +..-..+..+++|++|++++|...+
T Consensus       129 D~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHHHHhcCCCCCEEECCCCCCCC
Confidence            5434456667777777777765443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.43  E-value=7.3e-05  Score=65.21  Aligned_cols=120  Identities=15%  Similarity=0.094  Sum_probs=72.4

Q ss_pred             ccccCCCCCCEEEccCC-cCcCc---CchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc
Q 040254           45 PSIGNLTHISHLNLSHN-HVHGP---LPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS  120 (555)
Q Consensus        45 ~~~~~l~~L~~L~L~~n-~~~~~---i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  120 (555)
                      ..+.+-+.|++|+|+++ .+.+.   .-..++...+.|++|+|++|+|.+.....+.....  .-..|++|+|++|.|..
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~--~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--TSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--HCSSCCEEECCSSBCCH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh--cCCccCeEecCCCcCCH
Confidence            34556678888888875 66521   11233455677888888888888665555554332  33468888888888775


Q ss_pred             ----cCCccccCCCCCcEEEccCCCC---CC----CCcHhhhcCCCCCeeEeecccC
Q 040254          121 ----QVPPRLGNCSRLKSFQAGYSNL---LR----SLPDDIYAAASLEEPSLHFNKL  166 (555)
Q Consensus       121 ----~~~~~~~~l~~L~~L~L~~~~~---~~----~~~~~~~~l~~L~~L~l~~n~i  166 (555)
                          .+.+++..-..|++|+|+++..   ..    .+...+...+.|+.|+++.+.+
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                2334455556677887764321   11    1233455556677777665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.28  E-value=0.00021  Score=62.37  Aligned_cols=41  Identities=15%  Similarity=0.084  Sum_probs=21.7

Q ss_pred             ccCCCCCCeeeCCCc---cceee----cchhhhCCccCCeeeCCCCCC
Q 040254          464 TGQLKFLNVLDLGNN---NFAGS----IPNQISQLTILERLDLSKNHL  504 (555)
Q Consensus       464 ~~~l~~L~~L~Ls~N---~l~~~----~~~~l~~l~~L~~L~Ls~N~l  504 (555)
                      +..-+.|++|+|++|   .+...    +.+.+..-++|+.|+++.|.+
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            334455666666654   33321    334455556677777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.19  E-value=0.00056  Score=55.66  Aligned_cols=54  Identities=17%  Similarity=0.151  Sum_probs=42.1

Q ss_pred             cCCCCCcc-ccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCc
Q 040254           33 PAMNKLVQ-RYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS   89 (555)
Q Consensus        33 ~~~~~~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~   89 (555)
                      +.++++++ ..+|..+.  ++|++|+|++|.++ .++..+|..+++|++|+|++|.+.
T Consensus        14 ~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           14 DCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             ECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            34444554 35665543  37899999999998 899999999999999999999776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.02  E-value=0.00084  Score=54.58  Aligned_cols=56  Identities=20%  Similarity=0.203  Sum_probs=44.8

Q ss_pred             EEEccCcccc-ccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          448 TIFLANNSLS-GRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       448 ~l~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                      .++.++++++ ..+|..+.  ++|++|+|++|+|+...++.|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5888888886 35665432  46899999999999777778888999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	555
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 5e-17
 Identities = 74/361 (20%), Positives = 120/361 (33%), Gaps = 24/361 (6%)

Query: 44  LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG-----ELTGLIPS 98
             S  +L  ++ L      +     I+   +L  L  I+ S N L+       LT L+  
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 93

Query: 99  LAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEE 158
           L  N+    +  L    N     +                 + L  S       +A    
Sbjct: 94  LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL 153

Query: 159 PSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSL 218
            SL        +++         +  L       S    + KLTNL+ L+   N +S   
Sbjct: 154 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 213

Query: 219 PSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLT 278
           P  +   TNL  L+L GN           + L+ L  +DL  N  +   L  L+    LT
Sbjct: 214 P--LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLT 266

Query: 279 ALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD----- 333
            L+L  NQ+    P   +   + + +    L  +    N  N        N ISD     
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 326

Query: 334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQ 393
               L+ +  A  +++      L+ LT +  L    NQI+   P    NL  +    L+ 
Sbjct: 327 SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

Query: 394 N 394
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 6e-14
 Identities = 81/371 (21%), Positives = 127/371 (34%), Gaps = 45/371 (12%)

Query: 161 LHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS 220
           L    ++  +S    +L  +  L+      I SI   +  L NL  +    N L+   P 
Sbjct: 29  LGKTNVTDTVSQT--DLDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNNQLTDITP- 83

Query: 221 SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280
            + N T L  + +  N  A      N + L+ L   +  I        LT  +   L++ 
Sbjct: 84  -LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM----------------NFMNEATP 324
            ++       +           +   K L  L                       N  + 
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 325 NYDQNKISD-----GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW 379
               N+ISD        NL  +SL G QL       L+ LT L  L L+ NQI+   P  
Sbjct: 203 IATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP-- 258

Query: 380 FGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQY 439
              L  L    L  N IS   P  L+ L  L   +   N+ +   P     N    +  +
Sbjct: 259 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 440 NRIFGLRP--------TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQL 491
           N I  + P         +F ANN +S    +    L  +N L  G+N  +   P  ++ L
Sbjct: 317 NNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 372

Query: 492 TILERLDLSKN 502
           T + +L L+  
Sbjct: 373 TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 13/95 (13%)

Query: 40  QRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSL 99
           Q   +  I NL ++++L L  N++    P++S   LT L+ +  + N +S      + SL
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDISPVSS---LTKLQRLFFANNKVSD-----VSSL 347

Query: 100 AWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKS 134
           A   +  ++  L   +N  S   P  L N +R+  
Sbjct: 348 A---NLTNINWLSAGHNQISDLTP--LANLTRITQ 377

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 43  HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
            +  + +LT +  L  ++N V      +S   LT +  +   +N +S      +  LA  
Sbjct: 321 DISPVSSLTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQISD-----LTPLA-- 370

Query: 103 HSFCSMRLLDFSYN 116
            +   +  L  +  
Sbjct: 371 -NLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.9 bits (190), Expect = 2e-16
 Identities = 61/273 (22%), Positives = 91/273 (33%), Gaps = 32/273 (11%)

Query: 277 LTALRLACNQLEG--QIPPEIIKLKSL---ILMGCKNLNVL---------FLTMNFMNEA 322
           +  L L+   L     IP  +  L  L    + G  NL             L   ++   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 323 TPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGN 382
             +          + L  +  +   L+G +P  +S L  L  +   GN+I+G+IP  +G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 383 LPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRI 442
              LF       N              L  +      N       L  N           
Sbjct: 172 FSKLFTSMTISRN-------------RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 443 FGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN 502
                       +       + G  K LN LDL NN   G++P  ++QL  L  L++S  
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS-- 276

Query: 503 HLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCS 535
               NNL G IP GG L  F  S++  N   C 
Sbjct: 277 ---FNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.9 bits (164), Expect = 5e-13
 Identities = 52/265 (19%), Positives = 84/265 (31%), Gaps = 16/265 (6%)

Query: 168 GFISNDIINLTSLLVLELYSKELIG--SIPRDIGKLTNLKYLLLYRN-NLSGSLPSSMMN 224
           G + +       +  L+L    L     IP  +  L  L +L +    NL G +P ++  
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 225 CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLAC 284
            T L  L +     +G       S +  L T+D   N  +G+   +++S   L  +    
Sbjct: 100 LTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNK----------ISDG 334
           N++ G IP        L      + N L   +            +           +  G
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
                                +     L  L L  N+I G++P     L  L    +S N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 395 NISGEFP--KELSRLQPLVIEQNKF 417
           N+ GE P    L R        NK 
Sbjct: 279 NLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 56/267 (20%), Positives = 103/267 (38%), Gaps = 10/267 (3%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPI-NSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
           +      +++L+LS  ++  P PI +S   L  L  + +   +    L G IP      +
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN---NLVGPIPPAIAKLT 101

Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164
                 +  ++ + S  +P  L     L +    Y+ L  +LP  I +  +L   +   N
Sbjct: 102 QLHYLYI--THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 165 KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMN 224
           ++SG I +   + + L      S+  +           NL ++ L RN L G       +
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 225 CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLAC 284
             N + ++L  N  A +       +   L  +DL  N   G+    LT  + L +L ++ 
Sbjct: 220 DKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 285 NQLEGQIPP--EIIKLKSLILMGCKNL 309
           N L G+IP    + +         K L
Sbjct: 278 NNLCGEIPQGGNLQRFDVSAYANNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 7e-07
 Identities = 39/249 (15%), Positives = 76/249 (30%), Gaps = 55/249 (22%)

Query: 36  NKLVQRYHLP-SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTG 94
             L + Y +P S+ NL +++ L +   +        +   LT L  + +++         
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT------NV 113

Query: 95  LIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA 154
                 +     ++  LDFSYN  S  +PP + +   L       + +  ++PD   + +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 155 SLEEPSLHFN-----------------------------------------------KLS 167
            L                                                          
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 168 GFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTN 227
            F    +    +L  L+L +  + G++P+ + +L  L  L +  NNL G +P    N   
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR 292

Query: 228 LKTLNLMGN 236
                   N
Sbjct: 293 FDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 9/180 (5%)

Query: 40  QRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSL 99
                PSI +L ++  +    N + G +P +   F  L   + +S N L+G++     +L
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 100 AWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEP 159
                  S  +L+   +                 S               +  + +L   
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--------GKVGLSKNLNGL 249

Query: 160 SLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLP 219
            L  N++ G +   +  L  L  L +    L G IP   G L          N      P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 2e-13
 Identities = 49/269 (18%), Positives = 86/269 (31%), Gaps = 19/269 (7%)

Query: 143 LRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLT 202
           L  +P D+          L  NK++     D  NL +L  L L + ++    P     L 
Sbjct: 22  LEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79

Query: 203 NLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM 262
            L+ L L +N L             L+             S +N      +  +      
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV--RKSVFNGLNQMIVVELGTNPLK 137

Query: 263 FTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNL--------NVLFL 314
            +G         + L+ +R+A   +          L  L L G K           +  L
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 315 TMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITG 374
               ++  + +   N       +LR + L   +L  +VP  L+    ++V+ L  N I+ 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

Query: 375 ------SIPGWFGNLPSLFYFALSQNNIS 397
                   PG+     S    +L  N + 
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 8e-12
 Identities = 51/310 (16%), Positives = 93/310 (30%), Gaps = 31/310 (10%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
            +P+D+    +   L L  N ++        N  NL TL L+ N  +  +S   F+ L +
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVK 80

Query: 253 LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312
           LE + L  N           + + L        ++   +   + ++  + L      +  
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 313 FLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQI 372
                F                 + L  + +A   +T    +       L  L L GN+I
Sbjct: 141 IENGAFQG--------------MKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKI 183

Query: 373 TGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPL-VIEQNKFNRNKPDLPFFLFPN 431
           T         L +L    LS N+IS      L+    L  +  N     K          
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 432 QNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNN--NFAGSIPNQIS 489
                   N I  +    F          P    +    + + L +N   +    P+   
Sbjct: 244 IQVVYLHNNNISAIGSNDFC--------PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295

Query: 490 QLTILERLDL 499
            + +   + L
Sbjct: 296 CVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 41/288 (14%), Positives = 80/288 (27%), Gaps = 27/288 (9%)

Query: 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKL 166
              LLD   N  +        N   L +     + + +  P        LE   L  N+L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 167 SGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCT 226
                     L  L V E    ++  S+   + ++  +  L       SG    +     
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMK 150

Query: 227 NLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQ 286
            L  + +       N++     +   L  + L  N  T     +L     L  L L+ N 
Sbjct: 151 KLSYIRIADT----NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 287 LEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346
           +       +     L  +   N  ++ +     +               + ++ V L   
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD--------------HKYIQVVYLHNN 252

Query: 347 QLTG------QVPLWLSKLTKLEVLLLSGNQITGS--IPGWFGNLPSL 386
            ++         P + +K      + L  N +      P  F  +   
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.7 bits (138), Expect = 9e-10
 Identities = 39/176 (22%), Positives = 58/176 (32%), Gaps = 8/176 (4%)

Query: 336 QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395
            +   + L   ++T         L  L  L+L  N+I+   PG F  L  L    LS+N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 396 ISGEFPKELSRLQPLVIEQNK--------FNRNKPDLPFFLFPNQNSTSHQYNRIFGLRP 447
           +     K    LQ L + +N+        FN     +   L  N   +S   N  F    
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 448 TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNH 503
            +     + +       G    L  L L  N         +  L  L +L LS N 
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 40/267 (14%), Positives = 83/267 (31%), Gaps = 15/267 (5%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
              + L+L +N +   +    F  L  L  + L  N +S    G    L        +  
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLV------KLER 83

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
           L  S N               L+  +   + + +S+ + +     +E  + +  K SG  
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIE 142

Query: 171 SNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKT 230
           +     +  L  + +    +  +IP+ +    +L  L L  N ++    +S+    NL  
Sbjct: 143 NGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 231 LNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQ 290
           L L  N  +   +    +     E       +        L   + +  + L  N +   
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISA- 256

Query: 291 IPPEIIKLKSLILMGCKNLNVLFLTMN 317
           I                + + + L  N
Sbjct: 257 IGSNDFCPPGYNT-KKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 29/261 (11%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG--------------- 90
              NL ++  L L +N +    P  +F  L  LE + LS N L                 
Sbjct: 50  DFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 108

Query: 91  --ELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPD 148
             E+T +  S+    +   +  L  +    S           +L   +      + ++P 
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQ 167

Query: 149 DIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLL 208
            +    SL E  L  NK++   +  +  L +L  L L    +       +    +L+ L 
Sbjct: 168 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225

Query: 209 LYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG-----NLSAYNFSVLSQLETIDLYINMF 263
           L  N L    P  + +   ++ + L  N  +             +  +    + L+ N  
Sbjct: 226 LNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

Query: 264 TGSFLL--TLTSCRLLTALRL 282
               +   T     +  A++L
Sbjct: 285 QYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 38/245 (15%), Positives = 70/245 (28%), Gaps = 21/245 (8%)

Query: 307 KNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLL 366
            +  +L L  N + E              +NL  + L   +++   P   + L KLE L 
Sbjct: 31  PDTALLDLQNNKITEIKDG-----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85

Query: 367 LSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLP- 425
           LS NQ+          L  L         +       L+++  + +  N    +  +   
Sbjct: 86  LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 426 FFLFPNQNSTSHQYNRIFGLRPTIF-------LANNSLSGRIPAETGQLKFLNVLDLGNN 478
           F      +        I  +   +        L  N ++    A    L  L  L L  N
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 479 NFAGSIPNQISQLTILERLDLSKNHLSEN--------NLQGPIPSGGQLHTFPPSSFEGN 530
           + +      ++    L  L L+ N L +          +Q        +     + F   
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 531 PEFCS 535
                
Sbjct: 266 GYNTK 270

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 32/248 (12%), Positives = 69/248 (27%), Gaps = 41/248 (16%)

Query: 18  KSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTL 77
           K +          ++   N++ +       G    I     ++      +   +F  +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 78  LEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQA 137
           L  I ++  +++    GL PSL           L    N  +      L   + L     
Sbjct: 152 LSYIRIADTNITTIPQGLPPSL---------TELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 138 GYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRD 197
            ++++       +     L E  L+ NKL                            P  
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKV-------------------------PGG 237

Query: 198 IGKLTNLKYLLLYRNNLSG------SLPSSMMNCTNLKTLNLMGN-LFAGNLSAYNFSVL 250
           +     ++ + L+ NN+S         P       +   ++L  N +    +    F  +
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297

Query: 251 SQLETIDL 258
                + L
Sbjct: 298 YVRAAVQL 305

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 55/286 (19%), Positives = 88/286 (30%), Gaps = 34/286 (11%)

Query: 226 TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285
              + + L GN  +  + A +F     L  + L+ N+         T   LL  L L+ N
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 286 QLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG 345
                + P           G   L+ L L    + E  P   +         L+ + L  
Sbjct: 91  AQLRSVDPATF-------HGLGRLHTLHLDRCGLQELGPGLFRG-----LAALQYLYLQD 138

Query: 346 CQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELS 405
             L          L  L  L L GN+I+      F  L SL    L QN ++   P    
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 406 RLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETG 465
            L  L+      N         L P +                + L +N       A   
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQ------------YLRLNDNPWVCDCRA-RP 245

Query: 466 QLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQG 511
              +L      ++    S+P +++   +          L+ N+LQG
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQRLAGRDLKR--------LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 9e-09
 Identities = 50/258 (19%), Positives = 74/258 (28%), Gaps = 25/258 (9%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS------ 104
                + L  N +   +P  SF     L I+ L  N L+         LA          
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 105 -------------FCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIY 151
                           +  L           P      + L+      + L     D   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 152 AAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR 211
              +L    LH N++S         L SL  L L+   +    P     L  L  L L+ 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 212 NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTL 271
           NNLS     ++     L+ L L  N +  +  A      + L+      +    S    L
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQRL 268

Query: 272 TSCRLLTALRLACNQLEG 289
               L     LA N L+G
Sbjct: 269 AGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 43/256 (16%), Positives = 74/256 (28%), Gaps = 22/256 (8%)

Query: 178 TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNL 237
            +   + L+   +            NL  L L+ N L+    ++      L+ L+L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 238 FAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIK 297
              ++    F  L +L T+ L                  L  L L  N L+         
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 298 LKSL----------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAV 341
           L +L                   G  +L+ L L  N +    P+  ++        L   
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF-- 209

Query: 342 SLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP 401
                 L+      L+ L  L+ L L+ N               L  F  S + +    P
Sbjct: 210 ---ANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLP 265

Query: 402 KELSRLQPLVIEQNKF 417
           + L+      +  N  
Sbjct: 266 QRLAGRDLKRLAANDL 281

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 1e-09
 Identities = 44/222 (19%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 173 DIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLN 232
           ++  + S L +    + L  ++P D+ K  +   L L  N L     +++M  T L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 233 LMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIP 292
           L               VL  L+     +                     L    +     
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG------------QTLPALTVLDVSF 109

Query: 293 PEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQV 352
             +  L    L G   L  L+L  N +    P            +L         LT   
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-----NNNLTELP 164

Query: 353 PLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
              L+ L  L+ LLL  N +  +IP  F     L +  L  N
Sbjct: 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 34/201 (16%), Positives = 52/201 (25%), Gaps = 37/201 (18%)

Query: 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS-Q 393
             +   V+     LT  +P  L K     +L LS N +             L    L   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 394 NNISGEFPKELSRLQPLVIEQNKFNRNKP----------------------DLPFFLFPN 431
                +    L  L  L +  N+                                     
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 432 QNSTSHQYNRIFGLRPTI----------FLANNSLSGRIPAETGQLKFLNVLDLGNNNFA 481
                 + N +  L P +           LANN+L+         L+ L+ L L  N+  
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 482 GSIPNQISQLTILERLDLSKN 502
            +IP       +L    L  N
Sbjct: 186 -TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 11/188 (5%)

Query: 51  THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
              + L+LS N ++    + +    T L  ++L              +         +  
Sbjct: 31  KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAE---------LTKLQVDGTLPVLG 80

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
                ++    +P        L      ++ L       +     L+E  L  N+L    
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 171 SNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKT 230
              +     L  L L +  L       +  L NL  LLL  N+L  ++P        L  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 231 LNLMGNLF 238
             L GN +
Sbjct: 200 AFLHGNPW 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 8/217 (3%)

Query: 176 NLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG 235
            L + + +      +  ++      L  +  L  +   ++      +    NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEI 295
           N         N + +++LE     +   +    L       LT+ ++        +    
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 296 IKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLW 355
           +    L  +   +       + +++                 L  +     +++   PL 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL- 191

Query: 356 LSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS 392
            + L  L  + L  NQI+   P    N  +LF   L+
Sbjct: 192 -ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 40/215 (18%), Positives = 69/215 (32%), Gaps = 9/215 (4%)

Query: 201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYI 260
           L N   +   ++N++ ++  +  +   + TL+  G       +      L+ L  ++L  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 261 NMF-TGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFM 319
           N     + L  LT    L         +      + IK   L      ++  L    N  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 320 NEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW 379
                      IS          L+           L+ L+KL  L    N+I+   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 380 FGNLPSLFYFALSQNNISGEFP-KELSRLQPLVIE 413
             +LP+L    L  N IS   P    S L  + + 
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 32/271 (11%), Positives = 70/271 (25%), Gaps = 17/271 (6%)

Query: 46  SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105
             G L     +           P+        ++ +DLS + +       +  +    S 
Sbjct: 16  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCS- 71

Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165
             ++ L       S  +   L   S L        +           ++      L+ + 
Sbjct: 72  -KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 130

Query: 166 LSGFISNDIINLTSLLVLELYSKELIG---------SIPRDIGKLTNLKYLLLYRNNLSG 216
              F    +    + +   +    L G                    +   L     L  
Sbjct: 131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 190

Query: 217 SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRL 276
                      L+ L+L         +      +  L+T+ ++  +  G+  L   +   
Sbjct: 191 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL-- 248

Query: 277 LTALRLACNQLEGQIPPEIIKLKSLILMGCK 307
              L++ C+       P I   K+  + G K
Sbjct: 249 -PHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 7/216 (3%)

Query: 173 DIINLTSLLVLEL-YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTL 231
           +  +   +  ++L  S   + ++   + + + L+ L L    LS  + +++   +NL  L
Sbjct: 41  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

Query: 232 NLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQI 291
           NL G       +              L     +  F  T    ++  A            
Sbjct: 101 NLSGCSGFSEFALQTL----LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 156

Query: 292 PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC-QLTG 350
                  KS +    +    L       +    N    +       L+ +SL+ C  +  
Sbjct: 157 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIP 215

Query: 351 QVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSL 386
           +  L L ++  L+ L + G    G++      LP L
Sbjct: 216 ETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 251

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 28/216 (12%), Positives = 53/216 (24%), Gaps = 16/216 (7%)

Query: 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252
            IP D+    N   L      L      +     +L+ + +  N     + A  FS L +
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 253 LETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312
           L  I +                       L  N     +P          ++     N+ 
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 313 FLTMNFMNEATPNYDQNKIS--------------DGFQNLRAVSLAGCQLTGQVPLWLSK 358
             T+   +    +++   +               +G Q           L          
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 359 LTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394
            +   +L +S  +I         NL  L   +    
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 47/319 (14%), Positives = 93/319 (29%), Gaps = 26/319 (8%)

Query: 203 NLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLS---AYNFSVLSQLETIDLY 259
           +LK   +   +   S+ + ++   ++K + L GN      +   + N +    LE  +  
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 260 INMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFM 319
                        + RLL    L C +L                            ++F+
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS----------DNAFGPTAQEPLIDFL 117

Query: 320 NEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQIT-GSIPG 378
           ++ TP       ++G        +A       V         L  ++   N++  GS+  
Sbjct: 118 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 177

Query: 379 WFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQ 438
           W     S       +   +G  P+ +  L    +   +  +             +S    
Sbjct: 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237

Query: 439 YNRIFGLRPTIFLANNSLSGRIPAETGQ------LKFLNVLDLGNNNFAGSIPNQI---- 488
             + +     + L +  LS R  A             L  L L  N         +    
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 489 -SQLTILERLDLSKNHLSE 506
             ++  L  L+L+ N  SE
Sbjct: 298 DEKMPDLLFLELNGNRFSE 316

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 54/315 (17%), Positives = 93/315 (29%), Gaps = 14/315 (4%)

Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI 170
           L+ +    SS +P    +   L +      N L  LP+      SL+   +  N L    
Sbjct: 43  LELNNLGLSS-LPELPPHLESLVA----SCNSLTELPELP---QSLKSLLVDNNNLKALS 94

Query: 171 SNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKT 230
               +     +      K         +  +      L    +L  SL         L+ 
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 231 LNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQ 290
           L  + NL        + + L +L  + L +        +      L     L     +  
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 291 IPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTG 350
           +   +  L   +       N L          T       I  G   L          + 
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 351 QVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPL 410
           ++         LE L +S N++   +P     L  L     S N+++ E P+    L+ L
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPELPQNLKQL 329

Query: 411 VIEQNKFNRNKPDLP 425
            +E N   R  PD+P
Sbjct: 330 HVEYNPL-REFPDIP 343

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 10/178 (5%)

Query: 333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS 392
           D F      +L    +T  V    ++L  ++ ++ + + I          LP++    L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 393 QNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR----IFGLRPT 448
            N ++   P    +    +       ++   L         S  H        +  L   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSE 506
             L   +          +L  L+ L L +N  +  +P  ++ LT L+ L LSKNH+S+
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 14/207 (6%)

Query: 193 SIPRDIGK------LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYN 246
           ++P  I +              L + +++ ++  + +N  ++  +    +      S   
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIK---SVQG 63

Query: 247 FSVLSQLETIDLYINMFTGSFLLT-LTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMG 305
              L  +  + L  N  T    L  L +   L         L      + +K  SL   G
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123

Query: 306 CKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVL 365
             ++N L       +    N     I+   +  +  +L+         + L+ LTKL+ L
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183

Query: 366 LLSGNQITGSIPGWFGNLPSLFYFALS 392
            LS N I+  +      L +L    L 
Sbjct: 184 YLSKNHIS-DLRA-LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 21/192 (10%)

Query: 44  LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNH 103
             +   L  I  +  +++ +     +    +L  +  + L+ N L+              
Sbjct: 39  AVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLTDI--------KPLA 87

Query: 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
           +  ++  L    N        +     +  S +    + +  L             SL+ 
Sbjct: 88  NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ------LESLYL 141

Query: 164 NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMM 223
                     +  LT L  L L   ++   +P  +  LT L+ L L +N++S     ++ 
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALA 197

Query: 224 NCTNLKTLNLMG 235
              NL  L L  
Sbjct: 198 GLKNLDVLELFS 209

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 337 NLRAVSLAGCQLT-GQVPLWLSKLTKLEVLLLSGNQITG----SIPGWFGNLPSLFYFAL 391
           +++++ +   +L+  +    L  L + +V+ L    +T      I       P+L    L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 392 SQNNISGEFPKELSRL 407
             N +       + + 
Sbjct: 63  RSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 6/108 (5%)

Query: 23  NHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPI---NSFHFLTLLE 79
                 I      +  V+          + +  L L+   V          +      L 
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400

Query: 80  IIDLSYNSLSGE-LTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL 126
            +DLS N L    +  L+ S+      C +  L      +S ++  RL
Sbjct: 401 ELDLSNNCLGDAGILQLVESVRQPG--CLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 14/94 (14%)

Query: 202 TNLKYLLLYRNNLSG----SLPSSMMNCTNLKTLNLMGNLF----AGNLSAYNFSVLSQL 253
           + L+ L L   ++S     SL ++++   +L+ L+L  N         L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 254 ETIDLYINMFTGSFLLTLTSCRLLTALRLACNQL 287
           E + LY   ++            L AL      L
Sbjct: 429 EQLVLYDIYWSEEM------EDRLQALEKDKPSL 456

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 29/189 (15%), Positives = 61/189 (32%), Gaps = 12/189 (6%)

Query: 201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYI 260
           L      +L + N++ ++  +  +   + TL        G  S      L+ L  I+   
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSN 71

Query: 261 NMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMN 320
           N  T    L   +  +   +          +          +             +  +N
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 321 EATPNYDQ---NKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP 377
               + +         G  +L+ ++ +  Q+T   PL  + LT LE L +S N+++    
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSD--I 187

Query: 378 GWFGNLPSL 386
                L +L
Sbjct: 188 SVLAKLTNL 196

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 9/188 (4%)

Query: 49  NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG-----ELTGLIPSLAWNH 103
            L       L   +V   +       +T L+   L   S+ G      LT +  S     
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 75

Query: 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163
               ++ L    +   +             +   G +     + D            L  
Sbjct: 76  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 135

Query: 164 NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMM 223
           +  +    + +  LTSL  L   S ++    P  +  LT L+ L +  N +S    S + 
Sbjct: 136 SSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 191

Query: 224 NCTNLKTL 231
             TNL++L
Sbjct: 192 KLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 6/176 (3%)

Query: 333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS 392
                     L    +T  V    + L ++  L      I  SI G    L +L     S
Sbjct: 15  TALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFS 70

Query: 393 QNNISGE--FPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIF 450
            N ++           +  L+      +         L       +   +       T  
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 451 LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSE 506
                 S  I   +      ++  L  ++   +    ++ LT LERLD+S N +S+
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	555
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.88
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.24

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=6.2e-28  Score=232.61  Aligned_cols=259  Identities=30%  Similarity=0.469  Sum_probs=155.9

Q ss_pred             CCcEEEcccCcccc--CCCcCccCCCCCCeeeCcc-CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcE
Q 040254          179 SLLVLELYSKELIG--SIPRDIGKLTNLKYLLLYR-NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLET  255 (555)
Q Consensus       179 ~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  255 (555)
                      .++.|+++++.+.+  .+|..++.+++|++|+|++ |.+.+.+|..+.++++|++|++++|.+.+..+ ..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc-ccccchhhhcc
Confidence            45566666665554  2455555666666666654 45555555555555555555555555543222 33444444444


Q ss_pred             EEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCC
Q 040254          256 IDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGF  335 (555)
Q Consensus       256 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  335 (555)
                      ++++.|.+.+..+..+..++.+                                                          
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L----------------------------------------------------------  151 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNL----------------------------------------------------------  151 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTC----------------------------------------------------------
T ss_pred             cccccccccccCchhhccCccc----------------------------------------------------------
Confidence            4444444443333334444444                                                          


Q ss_pred             CCccEEEccCcccccccchhhhCCCCC-cEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhh
Q 040254          336 QNLRAVSLAGCQLTGQVPLWLSKLTKL-EVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQ  414 (555)
Q Consensus       336 ~~L~~L~l~~n~i~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~  414 (555)
                         +.+++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+.. ..++++++...+.+|..+..++.+.   
T Consensus       152 ---~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~---  224 (313)
T d1ogqa_         152 ---VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQ---  224 (313)
T ss_dssp             ---CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCS---
T ss_pred             ---ceeecccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc---
Confidence               444444444444444444444433 44555555555444444444332 2455555555555554444444443   


Q ss_pred             ccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccC
Q 040254          415 NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTIL  494 (555)
Q Consensus       415 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  494 (555)
                                                       .+++++|.+++.++ .+..+++|+.|+|++|++++.+|+.+.++++|
T Consensus       225 ---------------------------------~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L  270 (313)
T d1ogqa_         225 ---------------------------------KIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL  270 (313)
T ss_dssp             ---------------------------------EEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred             ---------------------------------cccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCC
Confidence                                             35555565554433 46677889999999999999999999999999


Q ss_pred             CeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCcccCCCCC
Q 040254          495 ERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSST  543 (555)
Q Consensus       495 ~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~~~~~~~~  543 (555)
                      ++|||++|+|+     |.+|+...++.+..+++.||+.+|+.|+. .|.
T Consensus       271 ~~L~Ls~N~l~-----g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c~  313 (313)
T d1ogqa_         271 HSLNVSFNNLC-----GEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             CEEECCSSEEE-----EECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred             CEEECcCCccc-----ccCCCcccCCCCCHHHhCCCccccCCCCC-CCC
Confidence            99999999875     88998878889999999999999998763 563

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.2e-25  Score=223.31  Aligned_cols=356  Identities=24%  Similarity=0.264  Sum_probs=192.6

Q ss_pred             cCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEE
Q 040254           33 PAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD  112 (555)
Q Consensus        33 ~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~  112 (555)
                      .++..++.+.+.  ...+.+|++|+++++.+. .+..  +..+++|++|++++|+|++..+  +   .   .+++|++|+
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~-~l~g--l~~L~nL~~L~Ls~N~l~~l~~--l---~---~L~~L~~L~   94 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--L---K---NLTKLVDIL   94 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--G---T---TCTTCCEEE
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCC-Cccc--cccCCCCCEEeCcCCcCCCCcc--c---c---CCccccccc
Confidence            344455555443  234567777777777776 4532  5567777777777777774321  2   1   455777777


Q ss_pred             ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc
Q 040254          113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG  192 (555)
Q Consensus       113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~  192 (555)
                      +++|++.+ ++ .++++++|+.|+++++......  .......+.......+.+.....................     
T Consensus        95 L~~n~i~~-i~-~l~~l~~L~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----  165 (384)
T d2omza2          95 MNNNQIAD-IT-PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----  165 (384)
T ss_dssp             CCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----
T ss_pred             cccccccc-cc-cccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----
Confidence            77777764 22 3667777777777765544332  233345555666655555433222111111111111111     


Q ss_pred             CCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccccccccc
Q 040254          193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLT  272 (555)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  272 (555)
                      .....+...+.........+...  ....+..+++++.+++++|.+.+..   .+..+++|+.+++++|.+++.  ..+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~l~~~--~~l~  238 (384)
T d2omza2         166 TDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDI--GTLA  238 (384)
T ss_dssp             CCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred             chhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCC---cccccCCCCEEECCCCCCCCc--chhh
Confidence            11112222333333333333322  2233444555555555555544221   133344555555555554432  2344


Q ss_pred             CCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccccccc
Q 040254          273 SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQV  352 (555)
Q Consensus       273 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  352 (555)
                      .+++|+.+++++|++.                                +..+.       ..+++|+.|+++++++++..
T Consensus       239 ~l~~L~~L~l~~n~l~--------------------------------~~~~~-------~~~~~L~~L~l~~~~l~~~~  279 (384)
T d2omza2         239 SLTNLTDLDLANNQIS--------------------------------NLAPL-------SGLTKLTELKLGANQISNIS  279 (384)
T ss_dssp             GCTTCSEEECCSSCCC--------------------------------CCGGG-------TTCTTCSEEECCSSCCCCCG
T ss_pred             cccccchhccccCccC--------------------------------CCCcc-------cccccCCEeeccCcccCCCC
Confidence            4455555555555443                                32210       34456666666666665322


Q ss_pred             chhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCC
Q 040254          353 PLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQ  432 (555)
Q Consensus       353 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~  432 (555)
                        .+..++.++.+++++|++.+.  ..+..+++++.|++++|++++..  .+..++.|.                     
T Consensus       280 --~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~---------------------  332 (384)
T d2omza2         280 --PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQ---------------------  332 (384)
T ss_dssp             --GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCC---------------------
T ss_pred             --ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCC---------------------
Confidence              245666667777777766632  23556667777777777766432  244444443                     


Q ss_pred             cccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCC
Q 040254          433 NSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN  502 (555)
Q Consensus       433 ~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N  502 (555)
                                     .|++++|++++ ++ .+.++++|++|++++|+|++..|  +.++++|++|+|++|
T Consensus       333 ---------------~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         333 ---------------RLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ---------------EEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ---------------EEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence                           46677776663 33 47778888888888888886654  788888889988887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=7.4e-27  Score=225.02  Aligned_cols=272  Identities=20%  Similarity=0.268  Sum_probs=193.2

Q ss_pred             ccCCCCceEec--ccCcceeeccC-ceeeeeccCCCCCccc--cCCccccCCCCCCEEEccC-CcCcCcCchhHHhcCCC
Q 040254            4 VPAAGGQIISC--HTEKSILRNHG-GFNILMQPAMNKLVQR--YHLPSIGNLTHISHLNLSH-NHVHGPLPINSFHFLTL   77 (555)
Q Consensus         4 ~~~~~~~~~~c--~~~~~~~~~~~-~~~~~~~~~~~~~i~~--~~~~~~~~l~~L~~L~L~~-n~~~~~i~~~~~~~l~~   77 (555)
                      ..-|.....+|  .|.++.|...+ ...++.++++++++++  .+|++|+++++|++|+|++ |.+.|.+|.. |.++++
T Consensus        24 l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~  102 (313)
T d1ogqa_          24 LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQ  102 (313)
T ss_dssp             GTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTT
T ss_pred             CCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccc
Confidence            44566556777  48999887643 2357778888888887  4778888888888888886 6777778864 666888


Q ss_pred             CCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCC-
Q 040254           78 LEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASL-  156 (555)
Q Consensus        78 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L-  156 (555)
                      |++|+|++|++.+..+..+..      +.+|+++++++|.+...+|..+.++++++++++++|.+.+.+|..+..+..+ 
T Consensus       103 L~~L~Ls~N~l~~~~~~~~~~------~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~  176 (313)
T d1ogqa_         103 LHYLYITHTNVSGAIPDFLSQ------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             CSEEEEEEECCEEECCGGGGG------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             cchhhhccccccccccccccc------hhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccc
Confidence            888888888888766555443      3478888888887777777778888888888888877777777777777665 


Q ss_pred             CeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCc
Q 040254          157 EEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGN  236 (555)
Q Consensus       157 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n  236 (555)
                      +.+++++|++++..+..+..+..+ .+++..+...+..|..+..+++++.++++++.+.+.+ ..+..+++|+.|++++|
T Consensus       177 ~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N  254 (313)
T d1ogqa_         177 TSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-cccccccccccccCccC
Confidence            677777777777666666665443 5777777776666666677777777777777776443 34666677777777777


Q ss_pred             cCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccce
Q 040254          237 LFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQ  286 (555)
Q Consensus       237 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  286 (555)
                      .+++.+| ..+..+++|++|++++|++++..|. +..+.+|+.+++++|+
T Consensus       255 ~l~g~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         255 RIYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCEECCC-GGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             eecccCC-hHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            7766665 3466667777777777776655442 4555666666666664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2.6e-24  Score=213.44  Aligned_cols=191  Identities=26%  Similarity=0.282  Sum_probs=132.3

Q ss_pred             ccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccccc
Q 040254          271 LTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTG  350 (555)
Q Consensus       271 l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~  350 (555)
                      ...+++++.+++++|.+.+..+          ...+++|+.+++++|.++....  +     ..+++|+.+++++|.+++
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~----------~~~~~~L~~L~l~~n~l~~~~~--l-----~~l~~L~~L~l~~n~l~~  255 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP----------LGILTNLDELSLNGNQLKDIGT--L-----ASLTNLTDLDLANNQISN  255 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG----------GGGCTTCCEEECCSSCCCCCGG--G-----GGCTTCSEEECCSSCCCC
T ss_pred             cccccccceeeccCCccCCCCc----------ccccCCCCEEECCCCCCCCcch--h-----hcccccchhccccCccCC
Confidence            4455566666666665543221          1223455666666665554321  1     456788888888888874


Q ss_pred             ccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccC
Q 040254          351 QVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFP  430 (555)
Q Consensus       351 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~  430 (555)
                      ..  .+..+++|++|+++++++.+..  .+..++.++.+++++|.+.+.  ..+..+..+.                   
T Consensus       256 ~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~-------------------  310 (384)
T d2omza2         256 LA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLT-------------------  310 (384)
T ss_dssp             CG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCS-------------------
T ss_pred             CC--cccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccC-------------------
Confidence            33  3677888888998888887443  366788888888888888742  2344444443                   


Q ss_pred             CCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcce
Q 040254          431 NQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQ  510 (555)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~  510 (555)
                                       .+++++|++++..  .+..+++|++|++++|+|++ ++ .+..+++|++|++++|+|+     
T Consensus       311 -----------------~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~-----  364 (384)
T d2omza2         311 -----------------YLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS-----  364 (384)
T ss_dssp             -----------------EEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC-----
T ss_pred             -----------------eEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC-----
Confidence                             5999999998653  37889999999999999984 44 6899999999999999997     


Q ss_pred             ecCCCCCCCCCCCCCccCCC
Q 040254          511 GPIPSGGQLHTFPPSSFEGN  530 (555)
Q Consensus       511 ~~ip~~~~~~~l~~~~~~gN  530 (555)
                      +..| -..++.+..+++++|
T Consensus       365 ~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         365 DLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             BCGG-GTTCTTCSEEECCCE
T ss_pred             CChh-hccCCCCCEeeCCCC
Confidence            2233 345667777788776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.5e-24  Score=203.96  Aligned_cols=252  Identities=16%  Similarity=0.183  Sum_probs=180.4

Q ss_pred             CCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccC
Q 040254            6 AAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSY   85 (555)
Q Consensus         6 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   85 (555)
                      ++++.+|.|.+.++.|...+             + ..+|+.+.  +++++|+|++|+++ .+++..|.++++|++|++++
T Consensus         2 ~~~p~~c~c~~~~~~C~~~~-------------L-~~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~   64 (305)
T d1xkua_           2 PVCPFRCQCHLRVVQCSDLG-------------L-EKVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILIN   64 (305)
T ss_dssp             CCCCTTCEEETTEEECTTSC-------------C-CSCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCCEecCCEEEecCCC-------------C-CccCCCCC--CCCCEEECcCCcCC-CcChhHhhcccccccccccc
Confidence            46778888988887777643             3 45676664  68999999999998 89988899999999999999


Q ss_pred             CcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeeccc
Q 040254           86 NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK  165 (555)
Q Consensus        86 n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~  165 (555)
                      |.+....+..|..      +++|++|++++|+++. +|..  ....++.|++.+|.+....+..+.....+..+....+.
T Consensus        65 n~~~~i~~~~f~~------l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~  135 (305)
T d1xkua_          65 NKISKISPGAFAP------LVKLERLYLSKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP  135 (305)
T ss_dssp             SCCCCBCTTTTTT------CTTCCEEECCSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccccchhhhhC------CCccCEecccCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhcccccccccccccc
Confidence            9999877777764      4499999999999985 5543  34678889998888777666667777777888877765


Q ss_pred             Ccc--cccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccC
Q 040254          166 LSG--FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLS  243 (555)
Q Consensus       166 i~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  243 (555)
                      ...  .....+..+++|+.+++++|.+.. ++..+  +++|+.|++++|......+..+..++.+++|++++|.+. .++
T Consensus       136 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~  211 (305)
T d1xkua_         136 LKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVD  211 (305)
T ss_dssp             CCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EEC
T ss_pred             ccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccc-ccc
Confidence            432  234557777788888887777653 33322  467777777777776666666777777777777777666 343


Q ss_pred             cccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceec
Q 040254          244 AYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE  288 (555)
Q Consensus       244 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  288 (555)
                      ...+..+++|+.|++++|.++.. +.++..+++|++|++++|+++
T Consensus       212 ~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         212 NGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccccceeeeccccccccc-ccccccccCCCEEECCCCccC
Confidence            35566666666666666666533 445556666666666666555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.7e-23  Score=197.37  Aligned_cols=124  Identities=26%  Similarity=0.345  Sum_probs=73.4

Q ss_pred             CCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCc
Q 040254          131 RLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLY  210 (555)
Q Consensus       131 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  210 (555)
                      ..+.++-++..+ ..+|..+.  +.+++|++++|+|+.+.+..|.++++|++|++++|.+....|..|..+++|++|+++
T Consensus        11 ~~~~~~C~~~~L-~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGL-EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCC-CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCC-CccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            455666654333 34555442  467777777777776666667777777777777777766666667777777777777


Q ss_pred             cCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccc
Q 040254          211 RNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN  261 (555)
Q Consensus       211 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  261 (555)
                      +|+++ .+|..+  ...++.|.+..|.+. .++...+.....+..+....+
T Consensus        88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n  134 (305)
T d1xkua_          88 KNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTN  134 (305)
T ss_dssp             SSCCS-BCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSS
T ss_pred             CCccC-cCccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccc
Confidence            77666 333322  235666666666555 333334444444444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=197.55  Aligned_cols=221  Identities=22%  Similarity=0.210  Sum_probs=184.6

Q ss_pred             CCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEc
Q 040254           34 AMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDF  113 (555)
Q Consensus        34 ~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~l  113 (555)
                      .++.+++ .+|..+.  +.+++|+|++|.++ .+|..+|.++++|++|++++|++....+..+..      ...++++..
T Consensus        18 c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~------~~~~~~l~~   87 (284)
T d1ozna_          18 CPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTG------LALLEQLDL   87 (284)
T ss_dssp             CCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCEEEC
T ss_pred             cCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccc------ccccccccc
Confidence            3445554 5566554  57899999999998 899889999999999999999999777666554      347888776


Q ss_pred             c-CCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc
Q 040254          114 S-YNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG  192 (555)
Q Consensus       114 s-~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~  192 (555)
                      . .+.++...+..|.++++|++|++++|......+..+.....|+.+++++|.++.+.+..|..+++|++|++++|.+..
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc
Confidence            5 556666667889999999999999988776666777888999999999999998888888899999999999999988


Q ss_pred             CCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254          193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG  265 (555)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  265 (555)
                      ..+..|..+++|+++++++|.+.+..|..|..+++|++|++++|.+. .++...|..+++|+.|++++|.+..
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccc-cccccccccccccCEEEecCCCCCC
Confidence            77888889999999999999998888888999999999999999987 5655778888999999999888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.8e-23  Score=192.85  Aligned_cols=226  Identities=19%  Similarity=0.142  Sum_probs=194.2

Q ss_pred             eEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEcc-CCcC
Q 040254           11 IISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLS-YNSL   88 (555)
Q Consensus        11 ~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls-~n~i   88 (555)
                      .+.|..... .++...+..+..+++++|.|++..+.+|.++++|++|++++|.+. .++...+..++.++.++.. .+.+
T Consensus        15 ~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccccccc
Confidence            345554433 333344556788999999999888889999999999999999998 7888889999999999876 5566


Q ss_pred             ccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcc
Q 040254           89 SGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSG  168 (555)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~  168 (555)
                      +...+..+.      .+++|++|++++|.+....+..+....+|+++++++|.+....+..|...++|++|++++|+++.
T Consensus        94 ~~l~~~~~~------~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          94 RSVDPATFH------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             CCCCTTTTT------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ccccchhhc------ccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc
Confidence            666666665      45599999999999987667778889999999999999887777788899999999999999999


Q ss_pred             cccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccC
Q 040254          169 FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLS  243 (555)
Q Consensus       169 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  243 (555)
                      +.+..|.++++|+++++++|.+.+..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+...
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            989999999999999999999999889999999999999999999997777889999999999999998875433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.1e-22  Score=185.74  Aligned_cols=198  Identities=21%  Similarity=0.201  Sum_probs=169.8

Q ss_pred             eeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCcc
Q 040254           30 LMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMR  109 (555)
Q Consensus        30 ~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~  109 (555)
                      ..++.++++++. +|+.+.  +++++|+|++|.++ .++...|.++++|++|+|++|+|+...+  +   .   .+++|+
T Consensus        13 ~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~---~---~l~~L~   80 (266)
T d1p9ag_          13 LEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV--D---G---TLPVLG   80 (266)
T ss_dssp             CEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC--C---S---CCTTCC
T ss_pred             eEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccccccc--c---c---cccccc
Confidence            334566777774 677664  58999999999998 7998899999999999999999985432  1   1   466999


Q ss_pred             EEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCc
Q 040254          110 LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKE  189 (555)
Q Consensus       110 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~  189 (555)
                      +|++++|+++. .+..+.++++|++|+++++......+..+..+.++++|++++|.++.+.+..+..+++++.+++++|+
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            99999999985 67788999999999999998887777788888999999999999998888888999999999999999


Q ss_pred             cccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccc
Q 040254          190 LIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGN  241 (555)
Q Consensus       190 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  241 (555)
                      ++...+..|..+++|++|+|++|.++ .+|..+..+++|+.|++++|++.+.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            98888888899999999999999998 7787888889999999999987643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.5e-22  Score=186.87  Aligned_cols=159  Identities=29%  Similarity=0.329  Sum_probs=87.8

Q ss_pred             CCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchh
Q 040254          333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVI  412 (555)
Q Consensus       333 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  412 (555)
                      ..+++|++|++++|+++. ++ .+..+++|++|++++|++. ..+..+..+++|++|++++|.+.+..+..+..+..+. 
T Consensus        52 ~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~-  127 (266)
T d1p9ag_          52 MPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ-  127 (266)
T ss_dssp             TTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC-
T ss_pred             hccccccccccccccccc-cc-ccccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccc-
Confidence            344455555555555542 22 2344555555555555555 3344455555566666655555543333333333333 


Q ss_pred             hhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCc
Q 040254          413 EQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLT  492 (555)
Q Consensus       413 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  492 (555)
                                                         .+++++|.++...+..+..++.++.|++++|+|++..++.+..++
T Consensus       128 -----------------------------------~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~  172 (266)
T d1p9ag_         128 -----------------------------------ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (266)
T ss_dssp             -----------------------------------EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             -----------------------------------cccccccccceeccccccccccchhcccccccccccCcccccccc
Confidence                                               366666666655555556666666666666666655556666666


Q ss_pred             cCCeeeCCCCCCCCCcceecCCCC-CCCCCCCCCccCCCcCCCCc
Q 040254          493 ILERLDLSKNHLSENNLQGPIPSG-GQLHTFPPSSFEGNPEFCSD  536 (555)
Q Consensus       493 ~L~~L~Ls~N~l~~~~l~~~ip~~-~~~~~l~~~~~~gNp~~c~~  536 (555)
                      +|++|+|++|+|+      .+|.+ ..+..+..+++.||||.|++
T Consensus       173 ~L~~L~Ls~N~L~------~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         173 NLDTLLLQENSLY------TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TCCEEECCSSCCC------CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ccceeecccCCCc------ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            6666666666665      33432 23445566666677777764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=8.5e-18  Score=163.75  Aligned_cols=312  Identities=24%  Similarity=0.233  Sum_probs=174.8

Q ss_pred             eeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCc
Q 040254           29 ILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSM  108 (555)
Q Consensus        29 ~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L  108 (555)
                      +.++++++++++. +|..   .++|++|++++|.++ .+|..    ..+|++|++++|+++...  .+|        +.|
T Consensus        40 l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l~--~lp--------~~L  100 (353)
T d1jl5a_          40 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALS--DLP--------PLL  100 (353)
T ss_dssp             CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCC--SCC--------TTC
T ss_pred             CCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchhh--hhc--------ccc
Confidence            4456666666653 4432   356777777777776 56642    456777777777666321  111        257


Q ss_pred             cEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccC
Q 040254          109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSK  188 (555)
Q Consensus       109 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n  188 (555)
                      ++|++++|.++. +|. ++.+++|++|+++++..... +.   ....+..+.+..+...  ....+..++.++.+++..|
T Consensus       101 ~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         101 EYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             CEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSS
T ss_pred             cccccccccccc-ccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccccc
Confidence            777777777663 443 45667777777766554322 11   2344555555554433  2334556666777777666


Q ss_pred             ccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccccc
Q 040254          189 ELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFL  268 (555)
Q Consensus       189 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  268 (555)
                      ..... +.   .....+.+....+.+. ..+ .+..++.|+.+++++|... ..+    .....+..+.+..+.+.... 
T Consensus       173 ~~~~~-~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~----~~~~~l~~~~~~~~~~~~~~-  240 (353)
T d1jl5a_         173 SLKKL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYLTDLP-  240 (353)
T ss_dssp             CCSSC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCC----SCCTTCCEEECCSSCCSCCC-
T ss_pred             ccccc-cc---cccccccccccccccc-ccc-ccccccccccccccccccc-ccc----cccccccccccccccccccc-
Confidence            55422 11   1123344555444443 222 2455666777777766544 221    23455666666666554311 


Q ss_pred             ccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccc
Q 040254          269 LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQL  348 (555)
Q Consensus       269 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i  348 (555)
                         ...+.+...++..+.+.+        +..+    .......++..+.+....         ..+++|++|++++|++
T Consensus       241 ---~~~~~l~~~~~~~~~~~~--------l~~l----~~~~~~~~~~~~~~~~~~---------~~~~~L~~L~Ls~N~l  296 (353)
T d1jl5a_         241 ---ELPQSLTFLDVSENIFSG--------LSEL----PPNLYYLNASSNEIRSLC---------DLPPSLEELNVSNNKL  296 (353)
T ss_dssp             ---CCCTTCCEEECCSSCCSE--------ESCC----CTTCCEEECCSSCCSEEC---------CCCTTCCEEECCSSCC
T ss_pred             ---cccccccccccccccccc--------cccc----cchhcccccccCcccccc---------ccCCCCCEEECCCCcc
Confidence               122344455544443321        0000    012334444444443332         4467899999999988


Q ss_pred             ccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchh
Q 040254          349 TGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVI  412 (555)
Q Consensus       349 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  412 (555)
                      + .+|.   .+++|+.|++++|+++ .+|..   +++|++|++++|+++ .+|.....++.|++
T Consensus       297 ~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~L~~  351 (353)
T d1jl5a_         297 I-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLRM  351 (353)
T ss_dssp             S-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEEEC
T ss_pred             C-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccCeeEC
Confidence            7 4554   3568889999999988 55542   468999999999987 66666666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.5e-16  Score=154.72  Aligned_cols=95  Identities=22%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR  131 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  131 (555)
                      ++++|+|+++.++ .+|+    ..++|++|++++|+|+.. |+.         ..+|+.|++++|.++. ++..   .+.
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~l-p~~---------~~~L~~L~l~~n~l~~-l~~l---p~~   99 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTEL-PEL---------PQSLKSLLVDNNNLKA-LSDL---PPL   99 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSC-CCC---------CTTCCEEECCSSCCSC-CCSC---CTT
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCccc-ccc---------hhhhhhhhhhhcccch-hhhh---ccc
Confidence            4556666666665 4553    135566666666665522 211         1255566666555542 2210   123


Q ss_pred             CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCc
Q 040254          132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS  167 (555)
Q Consensus       132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~  167 (555)
                      |++|++++|.+. .+| .+..+++|++|+++++.+.
T Consensus       100 L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         100 LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccccc-ccc-chhhhccceeecccccccc
Confidence            555555544432 222 1334444444444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.6e-21  Score=193.67  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=58.7

Q ss_pred             CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc----CCcccc
Q 040254           52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ----VPPRLG  127 (555)
Q Consensus        52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~  127 (555)
                      +|++||++++++++.--...++.++++++|+|++|+++......+....  ..+++|++|+|++|.+++.    +...+.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L--~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL--RVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH--HTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHH--hcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            4566677666666322233455566666777776666543222222211  1344666666666665421    111121


Q ss_pred             -CCCCCcEEEccCCCCCCC----CcHhhhcCCCCCeeEeecccCcc
Q 040254          128 -NCSRLKSFQAGYSNLLRS----LPDDIYAAASLEEPSLHFNKLSG  168 (555)
Q Consensus       128 -~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~  168 (555)
                       ...+|++|++++|.+...    ++..+..+++|++|++++|.+..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence             223566666666654432    23344455666666666665543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.9e-18  Score=157.72  Aligned_cols=222  Identities=14%  Similarity=0.129  Sum_probs=142.3

Q ss_pred             ceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCc
Q 040254           10 QIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS   89 (555)
Q Consensus        10 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~   89 (555)
                      ++|.|......|...             +++ .+|+.+.  +++++|++++|.+. .+|..+|.++++|++|++++|.+.
T Consensus         4 ~~C~C~~~~i~c~~~-------------~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~   66 (242)
T d1xwdc1           4 RICHCSNRVFLCQES-------------KVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL   66 (242)
T ss_dssp             SSEEECSSEEEEESC-------------SCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTC
T ss_pred             CcCCCcCCEEEEeCC-------------CCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhcccccc
Confidence            458888766666553             333 5665553  58999999999998 899888999999999999999887


Q ss_pred             ccc-CCCCccccccCCCCCccEEEccC-CcCCccCCccccCCCCCcEEEccCCCCCCCCcH-hhhcCCCCCeeEeecccC
Q 040254           90 GEL-TGLIPSLAWNHSFCSMRLLDFSY-NDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPD-DIYAAASLEEPSLHFNKL  166 (555)
Q Consensus        90 ~~~-~~~~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~n~i  166 (555)
                      ... +..|.      .+++++++.+.. +.+....+..|.++++|++++++++.+....+. .+..+..+..+...++.+
T Consensus        67 ~~i~~~~f~------~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l  140 (242)
T d1xwdc1          67 EVIEADVFS------NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI  140 (242)
T ss_dssp             CEECSSSEE------SCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTC
T ss_pred             ceeeccccc------cccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccc
Confidence            533 33443      344788887764 566666677788888888888888766543221 223334444455566666


Q ss_pred             cccccccccCCC-CCcEEEcccCccccCCCcCccCCCCCCe-eeCccCcCcccCCccccCCCCCCEEECcCccCccccCc
Q 040254          167 SGFISNDIINLT-SLLVLELYSKELIGSIPRDIGKLTNLKY-LLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSA  244 (555)
Q Consensus       167 ~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~-L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  244 (555)
                      ..+.+..|.+++ .++.|++++|++....+..+.. ++++. +++.+|.++...+..|..+++|++|++++|.+. .++.
T Consensus       141 ~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS  218 (242)
T ss_dssp             CEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCS
T ss_pred             ccccccccccccccceeeecccccccccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCH
Confidence            666556666554 6777777777776544444433 34333 345666666433445666777777777777666 4554


Q ss_pred             ccccCCCCCcEE
Q 040254          245 YNFSVLSQLETI  256 (555)
Q Consensus       245 ~~~~~l~~L~~L  256 (555)
                      ..|..++.|+.+
T Consensus       219 ~~~~~l~~L~~l  230 (242)
T d1xwdc1         219 YGLENLKKLRAR  230 (242)
T ss_dssp             SSCTTCCEEESS
T ss_pred             HHHcCCcccccC
Confidence            444444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-19  Score=183.13  Aligned_cols=312  Identities=18%  Similarity=0.131  Sum_probs=149.4

Q ss_pred             CCCCEEEccCCcCccccC-CCCccccccCCCCCccEEEccCCcCCc----cCCccccCCCCCcEEEccCCCCCCC----C
Q 040254           76 TLLEIIDLSYNSLSGELT-GLIPSLAWNHSFCSMRLLDFSYNDFSS----QVPPRLGNCSRLKSFQAGYSNLLRS----L  146 (555)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~-~~~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~~~~~~~----~  146 (555)
                      ++|++||++++++++... ..++      .+++++.|+|++|.++.    .++.++..+++|++|+|++|.+...    +
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~------~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l   75 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLP------LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV   75 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHH------HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHH------hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHH
Confidence            357888888888875321 1223      34478888888888774    3345567788888888887765422    1


Q ss_pred             cHhhhc-CCCCCeeEeecccCcccc----cccccCCCCCcEEEcccCccccCCCcCc-----cCCCCCCeeeCccCcCcc
Q 040254          147 PDDIYA-AASLEEPSLHFNKLSGFI----SNDIINLTSLLVLELYSKELIGSIPRDI-----GKLTNLKYLLLYRNNLSG  216 (555)
Q Consensus       147 ~~~~~~-l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~  216 (555)
                      ...+.. ..+|++|++++|.++...    +..+..+++|++|++++|.+.......+     ..................
T Consensus        76 ~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  155 (460)
T d1z7xw1          76 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  155 (460)
T ss_dssp             HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccch
Confidence            112211 246888888888776532    3445667778888887777653211111     011122222322222210


Q ss_pred             c----CCccccCCCCCCEEECcCccCcccc----CcccccCCCCCcEEEccccccccc----ccccccCCCCCcEEEccc
Q 040254          217 S----LPSSMMNCTNLKTLNLMGNLFAGNL----SAYNFSVLSQLETIDLYINMFTGS----FLLTLTSCRLLTALRLAC  284 (555)
Q Consensus       217 ~----~~~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~  284 (555)
                      .    ....+.....++.+.++++......    .............+.+..+.+...    ....+...+.++.+.+..
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~  235 (460)
T d1z7xw1         156 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS  235 (460)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred             hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhh
Confidence            0    1112233456666666665443110    000011123344555555544322    112233456666666666


Q ss_pred             ceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhh-----hCC
Q 040254          285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL-----SKL  359 (555)
Q Consensus       285 n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-----~~l  359 (555)
                      +.+.....   .............++.+++++|.+...........+ ...+.++.+++++|.++......+     ...
T Consensus       236 n~~~~~~~---~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l-~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~  311 (460)
T d1z7xw1         236 NKLGDVGM---AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL-RAKESLKELSLAGNELGDEGARLLCETLLEPG  311 (460)
T ss_dssp             SBCHHHHH---HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH-HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred             cccccccc---chhhcccccccccccccccccccccccccccccccc-cccccccccccccccccccccchhhccccccc
Confidence            65432111   011111123344566666666555432221111111 234455566666655542221111     122


Q ss_pred             CCCcEEEccCCccccccC----ccccCCCCCcEEEccCccCc
Q 040254          360 TKLEVLLLSGNQITGSIP----GWFGNLPSLFYFALSQNNIS  397 (555)
Q Consensus       360 ~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~  397 (555)
                      ..|+.+++++|.++....    ..+...++|++|+|++|+++
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeeccc
Confidence            355666666655543321    12233445666666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=7.8e-17  Score=146.26  Aligned_cols=203  Identities=17%  Similarity=0.224  Sum_probs=125.2

Q ss_pred             eccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccE
Q 040254           31 MQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL  110 (555)
Q Consensus        31 ~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~  110 (555)
                      ...++.+.+++..  .+.++.+|+.|++++|.+. .++.  +.++++|++|++++|++++..+  +   .   .+++|++
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~~~--l---~---~l~~l~~   89 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--L---K---NLTKITE   89 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--G---T---TCCSCCE
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeecccc--c---c---ccccccc
Confidence            3445555566544  3455677788888888777 5642  6678888888888887764322  2   1   4557788


Q ss_pred             EEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcc
Q 040254          111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKEL  190 (555)
Q Consensus       111 L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~  190 (555)
                      +++++|.++. + ..+.++++|++++++++.....  ..+...+.++.+.++++.+...  ..+..+++|++|++++|.+
T Consensus        90 l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2          90 LELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             EECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCC
T ss_pred             cccccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccccc
Confidence            8888777763 3 3466777777777776654432  2355566777777776666543  2356666777777766665


Q ss_pred             ccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcc
Q 040254          191 IGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLY  259 (555)
Q Consensus       191 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  259 (555)
                      ...  ..+..+++|+.|++++|.+++ ++ .+..+++|++|++++|+++ .++  .+..+++|+.|+++
T Consensus       164 ~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         164 SDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCG--GGTTCTTCCEEEEE
T ss_pred             ccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCc--ccccCCCCCEEEee
Confidence            432  225566666666666666653 22 3556666666666666655 333  25556666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2e-17  Score=145.78  Aligned_cols=139  Identities=16%  Similarity=0.116  Sum_probs=97.7

Q ss_pred             CCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCc
Q 040254            8 GGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNS   87 (555)
Q Consensus         8 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   87 (555)
                      ++.+|.|.+..+.|.             +++++ .+|+.+.  +++++|+|++|.+++.++...|.++++|++|++++|.
T Consensus         2 CP~~C~C~~~~v~Cs-------------~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~   65 (192)
T d1w8aa_           2 CPAMCHCEGTTVDCT-------------GRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ   65 (192)
T ss_dssp             CCTTSEEETTEEECT-------------TSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred             cCCCCEEcCCEEEEe-------------CCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccc
Confidence            345677765544443             34454 4566553  5788888888888756777778888888888888888


Q ss_pred             CccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCc
Q 040254           88 LSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS  167 (555)
Q Consensus        88 i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~  167 (555)
                      +....++.+..      +++|++|++++|+++...+.+|.++++|++|+|++|++....+..|..+++|++|++++|.+.
T Consensus        66 i~~~~~~~~~~------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          66 LTGIEPNAFEG------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCBCTTTTTT------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccccccc------ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            88766666553      347888888888887766667777777777777777766666666666777777777777665


Q ss_pred             c
Q 040254          168 G  168 (555)
Q Consensus       168 ~  168 (555)
                      .
T Consensus       140 ~  140 (192)
T d1w8aa_         140 C  140 (192)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=5.2e-16  Score=140.71  Aligned_cols=204  Identities=17%  Similarity=0.206  Sum_probs=120.8

Q ss_pred             CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCc
Q 040254           54 SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLK  133 (555)
Q Consensus        54 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~  133 (555)
                      ..++++.+.+.+.+.   ++.+.+|+.|++++|+|+.. . .+.      .+++|++|++++|.+++..  .+..+++++
T Consensus        22 ~~~~l~~~~~~d~~~---~~~l~~L~~L~l~~~~i~~l-~-~l~------~l~~L~~L~ls~n~i~~~~--~l~~l~~l~   88 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI-E-GVQ------YLNNLIGLELKDNQITDLA--PLKNLTKIT   88 (227)
T ss_dssp             HHHHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCC-T-TGG------GCTTCCEEECCSSCCCCCG--GGTTCCSCC
T ss_pred             HHHHhCCCCcCCcCC---HHHcCCcCEEECCCCCCCcc-h-hHh------cCCCCcEeecCCceeeccc--ccccccccc
Confidence            344566666663332   44566777778877777632 1 122      4557777777777776422  267777777


Q ss_pred             EEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCc
Q 040254          134 SFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNN  213 (555)
Q Consensus       134 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~  213 (555)
                      ++++++|.+.. + ..+.++++|+.++++++.....  ..+...+.++.+.++.+.+...  ..+..+++|++|++++|.
T Consensus        89 ~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~  162 (227)
T d1h6ua2          89 ELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQ  162 (227)
T ss_dssp             EEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSC
T ss_pred             ccccccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccc
Confidence            77777665442 2 2466677777777776665543  3355566666777666655432  224556666777776666


Q ss_pred             CcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcc
Q 040254          214 LSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLA  283 (555)
Q Consensus       214 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  283 (555)
                      +...  ..+..+++|++|++++|.+. .++  .+..+++|++|++++|++++..  .+..+++|+.|+++
T Consensus       163 ~~~~--~~l~~l~~L~~L~Ls~n~l~-~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         163 VSDL--TPLANLSKLTTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCC--GGGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             cccc--hhhcccccceecccCCCccC-CCh--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            6522  23556666666666666655 333  2556666666666666665432  25566666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.3e-17  Score=147.46  Aligned_cols=217  Identities=16%  Similarity=0.107  Sum_probs=131.0

Q ss_pred             CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc-CCccccCCCCC
Q 040254           54 SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ-VPPRLGNCSRL  132 (555)
Q Consensus        54 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L  132 (555)
                      ++++.++..++ .+|..++   +++++|++++|+|+...+..|.      .+++|++|++++|.+... .+.+|.+++++
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~------~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l   80 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFS------GFGDLEKIEISQNDVLEVIEADVFSNLPKL   80 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTT------TCTTCCEEEEESCTTCCEECSSSEESCTTC
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhh------ccchhhhhhhccccccceeecccccccccc
Confidence            56777777777 6776543   4678888888887765555554      344788888888776642 34567777777


Q ss_pred             cEEEccC-CCCCCCCcHhhhcCCCCCeeEeecccCcccccc-cccCCCCCcEEEcccCccccCCCcCccCCC-CCCeeeC
Q 040254          133 KSFQAGY-SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISN-DIINLTSLLVLELYSKELIGSIPRDIGKLT-NLKYLLL  209 (555)
Q Consensus       133 ~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~L  209 (555)
                      +++.+.. +.+....+..|.++++|++++++++.+....+. .+..+..++.+...++.+....+..|..++ .++.|++
T Consensus        81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l  160 (242)
T d1xwdc1          81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  160 (242)
T ss_dssp             CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             ccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeec
Confidence            7777654 344555555667777777777777777654322 233445555555555555544444555443 5666777


Q ss_pred             ccCcCcccCCccccCCCCCCEEE-CcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEc
Q 040254          210 YRNNLSGSLPSSMMNCTNLKTLN-LMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRL  282 (555)
Q Consensus       210 ~~n~l~~~~~~~l~~~~~L~~L~-l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  282 (555)
                      ++|.++.. +.......+++++. +.+|.++ .++...|.++++|+.|++++|.++......+..+++|+.+++
T Consensus       161 ~~n~l~~i-~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         161 NKNGIQEI-HNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CSSCCCEE-CTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccccc-ccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            77777633 33333344554443 4555555 555555666777777777777666555545555555544433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.3e-16  Score=140.55  Aligned_cols=177  Identities=21%  Similarity=0.173  Sum_probs=117.7

Q ss_pred             cEEEeccccCCCCCCccccccccCCCCCccEEEccCccccc-ccchhhhCCCCCcEEEccCCccccccCccccCCCCCcE
Q 040254          310 NVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTG-QVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFY  388 (555)
Q Consensus       310 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  388 (555)
                      +.++.+++.++.++..        -++++++|++++|++++ ..+..|..+++|++|++++|++....++.+..+++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~--------lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRD--------IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSCCSC--------CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEEeCCCcCccCCC--------CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccce
Confidence            4566666666655432        23567788888887764 34556677788888888888887777777777888888


Q ss_pred             EEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCC
Q 040254          389 FALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLK  468 (555)
Q Consensus       389 L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~  468 (555)
                      |+|++|++++..+..|.++..|.                                    .|+|++|+|++..+..|..++
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~------------------------------------~L~L~~N~l~~i~~~~f~~l~  126 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLK------------------------------------TLNLYDNQISCVMPGSFEHLN  126 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCC------------------------------------EEECCSSCCCEECTTSSTTCT
T ss_pred             eeeccccccccCHHHHhCCCccc------------------------------------ccccCCccccccCHHHhcCCc
Confidence            88888888766666677776665                                    477777777776777777778


Q ss_pred             CCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCccc
Q 040254          469 FLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIA  538 (555)
Q Consensus       469 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~~~  538 (555)
                      +|++|+|++|.+..... ...-...++.+.+..|.++     ...|.  .+..+...++..|.+.|..+-
T Consensus       127 ~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~-----c~~p~--~l~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         127 SLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAAR-----CGAPS--KVRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             TCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCB-----BCSST--TTTTSBGGGSCTTTCCCCCC-
T ss_pred             ccccccccccccccccc-hHHHhhhhhhhcccCCCeE-----eCCCh--hhcCCEeeecCHhhCcCCCCC
Confidence            88888888887763322 1111224555566665554     34454  345566667888888887543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.1e-16  Score=138.16  Aligned_cols=180  Identities=21%  Similarity=0.265  Sum_probs=109.2

Q ss_pred             ccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEE
Q 040254           32 QPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLL  111 (555)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L  111 (555)
                      ..+..+++.+.++.  ..+..|++|+++++.+. .++.  +..+++|++|++++|+|++..+     ..   .+++|++|
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~~-----~~---~l~~L~~L   95 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-----LA---NLKNLGWL   95 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-----GT---TCTTCCEE
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCccc-----cc---cCcccccc
Confidence            34455555555543  24567777888877776 4543  5667778888887777764321     11   45577777


Q ss_pred             EccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccc
Q 040254          112 DFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELI  191 (555)
Q Consensus       112 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~  191 (555)
                      ++++|++++ ++ .+.++++|+.|+++++.... + ..+..++.++++++++|.++..  ..+..+++|+++++++|.+.
T Consensus        96 ~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2          96 FLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             ECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ccccccccc-cc-cccccccccccccccccccc-c-cccccccccccccccccccccc--cccccccccccccccccccc
Confidence            777777764 33 46667777777777665432 2 3466666777777777766542  33555666666666666664


Q ss_pred             cCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254          192 GSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM  234 (555)
Q Consensus       192 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  234 (555)
                      +. + .+..+++|++|++++|.++ .++ .+..+++|++|+++
T Consensus       170 ~i-~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         170 DI-V-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CC-G-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             cc-c-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            32 2 2556666666666666665 233 35556666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.8e-16  Score=136.67  Aligned_cols=176  Identities=19%  Similarity=0.244  Sum_probs=93.7

Q ss_pred             cCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEE
Q 040254           33 PAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD  112 (555)
Q Consensus        33 ~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~  112 (555)
                      .++.+++++...  ...+.++++|+++++.+. .++.  ++.+++|++|++++|++++..+  +.      .+++|++|+
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~------~l~~L~~L~   90 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LK------NLTKLVDIL   90 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEE
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCccc--cc------CCccccccc
Confidence            344455554432  234566667777777665 4442  4556667777777666664321  11      344666666


Q ss_pred             ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc
Q 040254          113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG  192 (555)
Q Consensus       113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~  192 (555)
                      +++|.+.. ++ .+.++++|++|+++++.....  ..+..+++|+.|++++|.+..+  ..+..+++|+.|++.+|.+++
T Consensus        91 l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2          91 MNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC
T ss_pred             cccccccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccC
Confidence            66666553 22 355666666666665544332  2355556666666666655432  235555566666665555543


Q ss_pred             CCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEE
Q 040254          193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTL  231 (555)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  231 (555)
                      .  ..+..+++|++|++++|++++ ++ .+..+++|++|
T Consensus       165 l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         165 L--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             C--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            2  124555555555555555542 22 34445555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3.4e-15  Score=132.10  Aligned_cols=146  Identities=20%  Similarity=0.275  Sum_probs=65.0

Q ss_pred             CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254           75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA  154 (555)
Q Consensus        75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~  154 (555)
                      ++++++|++++|.++..     ..+.   .+++|++|++++|++++. + .++++++|++|++++|..... + .+.+++
T Consensus        39 l~~l~~L~l~~~~i~~l-----~~l~---~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~  106 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI-----DGVE---YLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI-T-PLANLT  106 (199)
T ss_dssp             HTTCCEEECTTSCCCCC-----TTGG---GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGTTCT
T ss_pred             hcCCCEEECCCCCCCCc-----cccc---cCCCcCcCccccccccCc-c-cccCCcccccccccccccccc-c-cccccc
Confidence            45556666666555421     1111   334555555555555532 2 155555555555555443322 1 244455


Q ss_pred             CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254          155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM  234 (555)
Q Consensus       155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  234 (555)
                      .|++|+++++.+...  ..+..+++|+.|++++|.+.. + +.+..+++|+.|++.+|.+++. + .+..+++|++|+++
T Consensus       107 ~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls  180 (199)
T d2omxa2         107 NLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDIS  180 (199)
T ss_dssp             TCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECC
T ss_pred             ccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECC
Confidence            555555555444332  224444444444444444421 1 1234444444444444444321 1 23444444444444


Q ss_pred             CccC
Q 040254          235 GNLF  238 (555)
Q Consensus       235 ~n~l  238 (555)
                      +|++
T Consensus       181 ~N~i  184 (199)
T d2omxa2         181 SNKV  184 (199)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            4443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.9e-15  Score=132.85  Aligned_cols=163  Identities=22%  Similarity=0.237  Sum_probs=135.0

Q ss_pred             eeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCC
Q 040254           28 NILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS  107 (555)
Q Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  107 (555)
                      .+..+++.++.|.+.-  .+..+++|++|++++|.++ .++.  +..+++|++|++++|++++.     +.+.   .+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~i~~l-----~~l~---~l~~  113 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDL-----SSLK---DLKK  113 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCG-----GGGT---TCTT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc--cccCcccccccccccccccc-----cccc---cccc
Confidence            4566788888888653  5889999999999999998 5664  67899999999999999853     2222   5679


Q ss_pred             ccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc
Q 040254          108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS  187 (555)
Q Consensus       108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~  187 (555)
                      |+.|++++|.+..  ...+..+++++.+++++|.+...  ..+..+++|+++++++|+++++.  .+.++++|++|++++
T Consensus       114 L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         114 LKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSK  187 (210)
T ss_dssp             CCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred             ccccccccccccc--ccccccccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCC
Confidence            9999999999873  34688899999999998887543  45778999999999999998753  488999999999999


Q ss_pred             CccccCCCcCccCCCCCCeeeCcc
Q 040254          188 KELIGSIPRDIGKLTNLKYLLLYR  211 (555)
Q Consensus       188 n~~~~~~~~~l~~l~~L~~L~L~~  211 (555)
                      |+++. ++ .+..+++|++|+|++
T Consensus       188 N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         188 NHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCC-Ch-hhcCCCCCCEEEccC
Confidence            99874 44 588999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.3e-15  Score=136.86  Aligned_cols=222  Identities=17%  Similarity=0.142  Sum_probs=138.1

Q ss_pred             CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc-CCccccCCCCC
Q 040254           54 SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ-VPPRLGNCSRL  132 (555)
Q Consensus        54 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L  132 (555)
                      +++||+++.+...+....+.  .....+.++...+.......+       ...+|++|+++++.+... +...+..+++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~-------~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L   73 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHF-------SPFRVQHMDLSNSVIEVSTLHGILSQCSKL   73 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCC-------CCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhc-------cCCCCCEEECCCCccCHHHHHHHHHhCCCc
Confidence            57888887765444444444  346677777655442221111       234789999998887642 34457788999


Q ss_pred             cEEEccCCCCCCCCcHhhhcCCCCCeeEeecc-cCccccc-ccccCCCCCcEEEcccCcc-ccC-CCcCc-cCCCCCCee
Q 040254          133 KSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN-KLSGFIS-NDIINLTSLLVLELYSKEL-IGS-IPRDI-GKLTNLKYL  207 (555)
Q Consensus       133 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~~-~~~-~~~~l-~~l~~L~~L  207 (555)
                      ++|+++++.+....+..+.++++|++|+++++ .++.... ....++++|++|++++|.. +.. ....+ ...++|+.|
T Consensus        74 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L  153 (284)
T d2astb2          74 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  153 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             ccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchh
Confidence            99999988777666777888888999999885 4543221 2235678888888887643 211 11112 224678888


Q ss_pred             eCccCc--Cccc-CCccccCCCCCCEEECcCcc-CccccCcccccCCCCCcEEEcccc-cccccccccccCCCCCcEEEc
Q 040254          208 LLYRNN--LSGS-LPSSMMNCTNLKTLNLMGNL-FAGNLSAYNFSVLSQLETIDLYIN-MFTGSFLLTLTSCRLLTALRL  282 (555)
Q Consensus       208 ~L~~n~--l~~~-~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l  282 (555)
                      +++++.  ++.. +...+..+++|++|++++|. +++.. ...+..+++|++|++++| .+++.....++.+++|+.|++
T Consensus       154 ~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             hhcccccccccccccccccccccccccccccccCCCchh-hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEee
Confidence            887642  3211 22233456778888887764 33222 234566777777777774 455555556667777777777


Q ss_pred             ccc
Q 040254          283 ACN  285 (555)
Q Consensus       283 ~~n  285 (555)
                      +++
T Consensus       233 ~~~  235 (284)
T d2astb2         233 FGI  235 (284)
T ss_dssp             TTS
T ss_pred             eCC
Confidence            765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.7e-15  Score=136.76  Aligned_cols=83  Identities=20%  Similarity=0.159  Sum_probs=53.9

Q ss_pred             CCCCCccEEEccCc-ccccccchhhhCCCCCcEEEccCC-ccccccCccccCCCCCcEEEccCccCc-cccchhhhcccc
Q 040254          333 DGFQNLRAVSLAGC-QLTGQVPLWLSKLTKLEVLLLSGN-QITGSIPGWFGNLPSLFYFALSQNNIS-GEFPKELSRLQP  409 (555)
Q Consensus       333 ~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~  409 (555)
                      ..+++|++|++++| .+++.....+..+++|++|++++| .+++.....+..+++|+.|+++++ ++ +.+......++.
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~  250 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH  250 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc
Confidence            34567777777775 455556667777888888888885 566655566777888888888887 33 223223345666


Q ss_pred             chhhhcc
Q 040254          410 LVIEQNK  416 (555)
Q Consensus       410 L~~~~~~  416 (555)
                      |++..+.
T Consensus       251 L~i~~~~  257 (284)
T d2astb2         251 LQINCSH  257 (284)
T ss_dssp             SEESCCC
T ss_pred             ccccCcc
Confidence            6654333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5e-14  Score=119.36  Aligned_cols=129  Identities=16%  Similarity=0.085  Sum_probs=77.6

Q ss_pred             cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254           46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR  125 (555)
Q Consensus        46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  125 (555)
                      .|.+..++|+|+|++|.++ .++ ..+..+++|++|++++|+|+..  +.++      .+++|++|++++|.++...+..
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~------~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFP------LLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCC------CCSSCCEEECCSSCCCEECSCH
T ss_pred             hccCcCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCCcc--CCcc------cCcchhhhhcccccccCCCccc
Confidence            3566777888888888887 665 3566677888888888877743  1222      3457777777777777544444


Q ss_pred             ccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeecccCccccc---ccccCCCCCcEEE
Q 040254          126 LGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHFNKLSGFIS---NDIINLTSLLVLE  184 (555)
Q Consensus       126 ~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~  184 (555)
                      +..+++|++|++++|.+...-. ..+..+++|++|++++|.++....   ..+..+++|++||
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            5566777777777666543211 245555666666666665544321   1244455555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=1.5e-14  Score=139.83  Aligned_cols=93  Identities=17%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             cCccCCCCCCeeeCccCcCccc----CCccccCCCCCCEEECcCccCcccc---C------cccccCCCCCcEEEccccc
Q 040254          196 RDIGKLTNLKYLLLYRNNLSGS----LPSSMMNCTNLKTLNLMGNLFAGNL---S------AYNFSVLSQLETIDLYINM  262 (555)
Q Consensus       196 ~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~---~------~~~~~~l~~L~~L~l~~n~  262 (555)
                      ..+.....++.|+|++|.+...    +...+...++|+.++++++......   +      ...+..++.|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3455567788888888876422    3344666778888888766432110   0      0123445667777777776


Q ss_pred             ccccc----cccccCCCCCcEEEcccceec
Q 040254          263 FTGSF----LLTLTSCRLLTALRLACNQLE  288 (555)
Q Consensus       263 ~~~~~----~~~l~~~~~L~~L~l~~n~~~  288 (555)
                      ++...    ...+..+++|++|++++|.+.
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             cccccccchhhhhcccccchheeccccccc
Confidence            65432    223345566777777766654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.2e-13  Score=116.99  Aligned_cols=126  Identities=21%  Similarity=0.165  Sum_probs=87.8

Q ss_pred             CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254          334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE  413 (555)
Q Consensus       334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~  413 (555)
                      ....+++|++++|+|+ .++..+..+++|+.|++++|++.. ++ .+..+++|++|++++|+++...+..+..+..|.  
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~--   90 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT--   90 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC--
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccc--
Confidence            4456778888888877 445556677888888888888874 33 477788888888888888754444445555554  


Q ss_pred             hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCC-hhccCCCCCCeeeCCCccceeec---chhhh
Q 040254          414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIP-AETGQLKFLNVLDLGNNNFAGSI---PNQIS  489 (555)
Q Consensus       414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~---~~~l~  489 (555)
                                                        .|++++|+++.... ..+..+++|++|++++|.++...   +..+.
T Consensus        91 ----------------------------------~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~  136 (162)
T d1a9na_          91 ----------------------------------ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY  136 (162)
T ss_dssp             ----------------------------------EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHH
T ss_pred             ----------------------------------cceeccccccccccccccccccccchhhcCCCccccccchHHHHHH
Confidence                                              47777777764321 35777888888889888887332   23577


Q ss_pred             CCccCCeee
Q 040254          490 QLTILERLD  498 (555)
Q Consensus       490 ~l~~L~~L~  498 (555)
                      .+|+|++||
T Consensus       137 ~lp~L~~LD  145 (162)
T d1a9na_         137 KVPQVRVLD  145 (162)
T ss_dssp             HCTTCSEET
T ss_pred             HCCCcCeeC
Confidence            788888887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=2e-14  Score=138.96  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=26.2

Q ss_pred             CCCccEEEccCcccccc----cchhhh-CCCCCcEEEccCCcccc
Q 040254          335 FQNLRAVSLAGCQLTGQ----VPLWLS-KLTKLEVLLLSGNQITG  374 (555)
Q Consensus       335 ~~~L~~L~l~~n~i~~~----~~~~l~-~l~~L~~L~L~~n~l~~  374 (555)
                      .+.|++|++++|.++..    +...+. .++.|++|++++|++.+
T Consensus       272 ~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            35677777777776532    233332 46778888888888763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=7.4e-13  Score=106.41  Aligned_cols=81  Identities=25%  Similarity=0.331  Sum_probs=35.8

Q ss_pred             CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccccc-ccccCCCCCcEEEc
Q 040254          107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFIS-NDIINLTSLLVLEL  185 (555)
Q Consensus       107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L  185 (555)
                      +|++|++++|.++. +|..++.+++|++|++++|.+.. ++ .+.++++|++|++++|+++.... ..+..+++|++|++
T Consensus        21 ~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          21 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            44444444444442 33344444444444444444332 22 24444444445554444443321 33444444555555


Q ss_pred             ccCcc
Q 040254          186 YSKEL  190 (555)
Q Consensus       186 ~~n~~  190 (555)
                      ++|++
T Consensus        98 ~~N~i  102 (124)
T d1dcea3          98 QGNSL  102 (124)
T ss_dssp             TTSGG
T ss_pred             CCCcC
Confidence            44444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=1.4e-12  Score=104.80  Aligned_cols=102  Identities=24%  Similarity=0.240  Sum_probs=72.0

Q ss_pred             cEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccC
Q 040254          109 RLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSK  188 (555)
Q Consensus       109 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n  188 (555)
                      |+|++++|+++. ++ .+..+++|++|++++|.+. .+|..+..+++|++|++++|.++.+  ..+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCCC
Confidence            567888888773 43 3777888888888877764 4666777888888888888888764  24777777777777777


Q ss_pred             ccccCC-CcCccCCCCCCeeeCccCcCc
Q 040254          189 ELIGSI-PRDIGKLTNLKYLLLYRNNLS  215 (555)
Q Consensus       189 ~~~~~~-~~~l~~l~~L~~L~L~~n~l~  215 (555)
                      ++.... ...+..+++|+.|++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            776432 234566677777777777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=5.3e-13  Score=117.09  Aligned_cols=129  Identities=15%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             CCCEEEccCC--cCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCC
Q 040254           52 HISHLNLSHN--HVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNC  129 (555)
Q Consensus        52 ~L~~L~L~~n--~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  129 (555)
                      ..+.+++++.  .+. .++ ..+..+++|++|+|++|+|+...  .+.      .+++|++|++++|.++. ++.....+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~-~sl~~L~~L~~L~Ls~n~I~~i~--~l~------~l~~L~~L~Ls~N~i~~-i~~~~~~~   92 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMD-ATLSTLKACKHLALSTNNIEKIS--SLS------GMENLRILSLGRNLIKK-IENLDAVA   92 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCH-HHHHHTTTCCEEECSEEEESCCC--CHH------HHTTCCEEECCEEEECS-CSSHHHHH
T ss_pred             ccceeeeecccCchh-hhh-hHHhcccccceeECcccCCCCcc--ccc------CCccccChhhccccccc-cccccccc
Confidence            3455555543  232 333 34666778888888887776431  222      34477888888777764 45444555


Q ss_pred             CCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccccc-ccccCCCCCcEEEcccCccccC
Q 040254          130 SRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFIS-NDIINLTSLLVLELYSKELIGS  193 (555)
Q Consensus       130 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~  193 (555)
                      ++|++|++++|.+...  ..+.++++|++|++++|+++.+.. ..+..+++|+.|++++|++...
T Consensus        93 ~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          93 DTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            6777777777765542  346677778888888887776432 4567777777777777776543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.5e-11  Score=100.10  Aligned_cols=107  Identities=17%  Similarity=0.067  Sum_probs=60.1

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCc-cCccccchhhhccccchhhhccCCCCCCCCCccccCCCccccccc
Q 040254          361 KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN-NISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQY  439 (555)
Q Consensus       361 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  439 (555)
                      ..+.++++++.+. ..|..+..+++|++|++++| .++...+..|.++..|.                            
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~----------------------------   59 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR----------------------------   59 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS----------------------------
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccC----------------------------
Confidence            3445555555555 34444555566666666544 35544444455554444                            


Q ss_pred             ccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254          440 NRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS  505 (555)
Q Consensus       440 ~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  505 (555)
                              .|++++|+|+...+.+|.++++|++|+|++|+|+...+..+ ...+|+.|+|++|++.
T Consensus        60 --------~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          60 --------NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             --------EEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT-CSCCCCEEECCSSCCC
T ss_pred             --------cceeeccccCCcccccccccccccceeccCCCCcccChhhh-ccccccccccCCCccc
Confidence                    35555555555555566666777777777777763333333 3345777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.8e-11  Score=100.55  Aligned_cols=92  Identities=22%  Similarity=0.137  Sum_probs=46.4

Q ss_pred             cHhhhcCCCCCeeEeecc-cCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCC
Q 040254          147 PDDIYAAASLEEPSLHFN-KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNC  225 (555)
Q Consensus       147 ~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~  225 (555)
                      |..+..+++|++|+++++ .++.+.+..|.++++|+.|++++|++....+.+|..+++|++|+|++|+++...+..+. .
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~  102 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-G  102 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-S
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-c
Confidence            333444445555555433 35544445555555555555555555544455555555555555555555522222222 2


Q ss_pred             CCCCEEECcCccCc
Q 040254          226 TNLKTLNLMGNLFA  239 (555)
Q Consensus       226 ~~L~~L~l~~n~l~  239 (555)
                      .+|++|++++|++.
T Consensus       103 ~~l~~L~L~~Np~~  116 (156)
T d2ifga3         103 LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCCEEECCSSCCC
T ss_pred             ccccccccCCCccc
Confidence            34666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=1.8e-12  Score=113.62  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=69.4

Q ss_pred             CCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCcccc
Q 040254          144 RSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMM  223 (555)
Q Consensus       144 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  223 (555)
                      ..++..+..+++|++|++++|.|+.+  ..+..+++|++|++++|.+. .++..+..+++|++|++++|.++..  ..+.
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             hhhhhHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccc
Confidence            34556677777777777777777754  24667777777777777765 3343333445677777777766632  2355


Q ss_pred             CCCCCCEEECcCccCccccCc-ccccCCCCCcEEEccccccc
Q 040254          224 NCTNLKTLNLMGNLFAGNLSA-YNFSVLSQLETIDLYINMFT  264 (555)
Q Consensus       224 ~~~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~~~  264 (555)
                      .+++|++|++++|.+. .++. ..+..+++|+.|++++|.+.
T Consensus       113 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         113 KLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccchhc-cccccccccCCCccceeecCCCccc
Confidence            5566666666666655 2221 23555666666666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.3e-08  Score=81.04  Aligned_cols=42  Identities=24%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             hhCCCCCcEEEccCCcccccc--CccccCCCCCcEEEccCccCc
Q 040254          356 LSKLTKLEVLLLSGNQITGSI--PGWFGNLPSLFYFALSQNNIS  397 (555)
Q Consensus       356 l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~  397 (555)
                      +..++.|++|++++|+++...  +..+..+++|+.|++++|.++
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            344555555555555555321  223344555555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=7.1e-08  Score=80.70  Aligned_cols=63  Identities=29%  Similarity=0.186  Sum_probs=24.1

Q ss_pred             CCCCCeeEeecccCcccc--cccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCc
Q 040254          153 AASLEEPSLHFNKLSGFI--SNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS  215 (555)
Q Consensus       153 l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  215 (555)
                      ++.|++|++++|+|+.+.  +..+..+++|+.|++++|.+....+-.+....+|+.|++++|.+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            344444444444444321  122333444444444444443222111122233444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.88  E-value=3.8e-06  Score=70.18  Aligned_cols=114  Identities=16%  Similarity=0.100  Sum_probs=68.1

Q ss_pred             CCCCCCEEEccCC-cCcCcCc---hhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc---
Q 040254           49 NLTHISHLNLSHN-HVHGPLP---INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ---  121 (555)
Q Consensus        49 ~l~~L~~L~L~~n-~~~~~i~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---  121 (555)
                      +.+.|++|+|+++ .++...-   ...+...+.|++|++++|.+.+.....+.....  ..+.|++|++++|.++..   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~--~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--TSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--HCSSCCEEECCSSBCCHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhh--hcccccceeeehhhcchHHHH
Confidence            4678888999874 4542211   123555677888888888887554444443321  345788888888877652   


Q ss_pred             -CCccccCCCCCcEEEccCCCCCCC-------CcHhhhcCCCCCeeEeecc
Q 040254          122 -VPPRLGNCSRLKSFQAGYSNLLRS-------LPDDIYAAASLEEPSLHFN  164 (555)
Q Consensus       122 -~~~~~~~l~~L~~L~L~~~~~~~~-------~~~~~~~l~~L~~L~l~~n  164 (555)
                       +..++...+.|++|+++++.....       +...+...+.|++|+++.+
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence             334456667777777776543221       2333444566666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.52  E-value=1.8e-05  Score=65.95  Aligned_cols=62  Identities=11%  Similarity=0.000  Sum_probs=38.1

Q ss_pred             CCCccEEEccCcccccc----cchhhhCCCCCcEEEccCCccccc-------cCccccCCCCCcEEEccCccC
Q 040254          335 FQNLRAVSLAGCQLTGQ----VPLWLSKLTKLEVLLLSGNQITGS-------IPGWFGNLPSLFYFALSQNNI  396 (555)
Q Consensus       335 ~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l  396 (555)
                      .+.|++|++++|.++..    +...+...++|++|++++|++...       +...+...++|+.|+++.+..
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            34566666666666532    233455667788888877765422       233455567888888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.35  E-value=5.9e-05  Score=62.66  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=31.2

Q ss_pred             CCCCccEEEccC-cccccc----cchhhhCCCCCcEEEccCCccccc----cCccccCCCCCcEEEccCccCc
Q 040254          334 GFQNLRAVSLAG-CQLTGQ----VPLWLSKLTKLEVLLLSGNQITGS----IPGWFGNLPSLFYFALSQNNIS  397 (555)
Q Consensus       334 ~~~~L~~L~l~~-n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  397 (555)
                      ..+.|++|++++ +.++..    +..++...++|++|++++|.++..    +...+...++++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            345566666655 234321    223334455566666666655432    1223344455566666555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.24  E-value=4.2e-05  Score=63.56  Aligned_cols=116  Identities=12%  Similarity=0.119  Sum_probs=58.0

Q ss_pred             ccCCCCCCEEEccC-CcCcCcCc---hhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc-
Q 040254           47 IGNLTHISHLNLSH-NHVHGPLP---INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ-  121 (555)
Q Consensus        47 ~~~l~~L~~L~L~~-n~~~~~i~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-  121 (555)
                      ..+.+.|++|+|++ +.++...-   ..++...++|++|++++|.++......+.....  ..+.++.+++++|.+... 
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~--~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HCSSCCEEECCSSCCCHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHh--hcccchhhhhccccccchh
Confidence            34567788888876 34542211   122345677777777777776443322222211  234666777766666531 


Q ss_pred             ---CCccccCCCCCcEEEcc--CCCCCC----CCcHhhhcCCCCCeeEeecc
Q 040254          122 ---VPPRLGNCSRLKSFQAG--YSNLLR----SLPDDIYAAASLEEPSLHFN  164 (555)
Q Consensus       122 ---~~~~~~~l~~L~~L~L~--~~~~~~----~~~~~~~~l~~L~~L~l~~n  164 (555)
                         +..++...+.|+.++|+  +|.+..    .+...+.+.+.|++|+++.+
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence               22344455566655443  222221    12223344455555555443