Citrus Sinensis ID: 040282

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MCAVLVTSFIMRVAYSEVFSDHSFYVYYSIIACSSFLILLNLQGHFFRQKASEADRKSAEKLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFFRKK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccHHHHHHHHHHcccEEEEccccEEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEHHHHHHHHHHcccccEEEEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHcccccHEEEEEEEEccccccccHHHHHHHHHHHHHcccEEEccccccEEEEEEcccccccEEEEccc
Coil and Loop (DISEMBL)
MCAVLVTSFIMRVAYSEVFSDHSFYVYYSIIACSSFLILLNLQGhffrqkaseADRKSAEKLVKTRNnevmtldwhsiepkEVVCLLRVHLtslsgiptikhlrivvgtsdedsKKEAQKRMIKKLLKKESIewtedgngqaILIQVdvidpkrlsffrkk
Flexible Loop (DISEMBL)
MCAVLVTSFIMRVAYSEVFSDHSFYVYYSIIACSSFLILLNLQGHFFRQKASEADRKSAEKLVKTRnnevmtldwhsiepKEVVCLLRVHLtslsgiptikhlrivvgtsdedskkeAQKRMIKKLLKKesiewtedgngqailiqvdvidpkrlsffrkk
Low Complexity Region (SEG)
MCAVLVTSFIMRVAYSEVFSDHSFYVYYSIIACSSFLILLNLQGHFFRQKASEADRKSAEKLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFFRKK
Disordered region (IsUnstruct)
*CAVLVTSFIMRVAYSEVFSDHSFYVYYSIIACSSFLILLNLQGHFFR******************NNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVG*********************ESIEWTEDGNGQAILIQVDVIDPKRLS*****
Disordered Region (DISOPRED)
*CAVLVTSFIMRVAYSEVFSDHSFYVYYSIIACSSFLILLNLQGH****************LVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTS****PTIKHLRIVV****************KKLLKKESIEWTEDGNGQAILIQVDVIDPK*L******
Disordered Region (DISEMBL)
MCAVLVTSFIMRVAYSEVFSDHSFYVYYSIIACSSFLILLNLQGHFFRQ***********KLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGT*************IKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFFRKK
Disordered Region (DISPRO)
MCAVLVTSFIMRVAYSEVFSDHSFYVYYSIIACSSFLILLNLQGHFFRQKASEADRKSAEKLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFF***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCAVLVTSFIMRVAYSEVFSDHSFYVYYSIIACSSFLILLNLQGHFFRQKASEADRKSAEKLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFFRKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
224128350	703	predicted protein [Populus trichocarpa]	0.732	0.167	0.567	5e-32
255575308	511	ATP binding protein, putative [Ricinus c	0.739	0.232	0.566	1e-31
296086984	494	unnamed protein product [Vitis vinifera]	0.732	0.238	0.532	1e-26
359483470	362	PREDICTED: uncharacterized protein LOC10	0.732	0.325	0.532	1e-26
449433849	504	PREDICTED: uncharacterized protein LOC10	0.726	0.232	0.462	3e-24
255556035	501	conserved hypothetical protein [Ricinus	0.732	0.235	0.454	6e-24
449527531	123	PREDICTED: uncharacterized protein LOC10	0.720	0.943	0.466	1e-23
224125304	504	predicted protein [Populus trichocarpa]	0.732	0.234	0.454	2e-20
7021724	468	hypothetical protein [Arabidopsis thalia	0.720	0.247	0.436	4e-18
334185369	299	protein silencing defective 5 [Arabidops	0.720	0.387	0.436	4e-18

>gi|224128350|ref|XP_002329140.1| predicted protein [Populus trichocarpa] gi|222869809|gb|EEF06940.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 91/118 (77%)

Query: 43  QGHFFRQKASEADRKSAEKLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKH 102
           QG FF +KA EAD KS +KL++TR++E+++LD    EPKE +  LR HLTS SGIP+IK+
Sbjct: 393 QGQFFNEKAREADEKSFQKLMETRDDEIVSLDLLGFEPKEALHSLRFHLTSFSGIPSIKY 452

Query: 103 LRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFFRK 160
           LR+V+   ++D+ K  ++R+I K L+KESI+WT++GNGQ ILIQVD IDPK LSF  K
Sbjct: 453 LRVVIENDEKDTTKGKRRRLIMKQLEKESIKWTDEGNGQIILIQVDAIDPKHLSFAEK 510

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575308|ref|XP_002528557.1| ATP binding protein, putative [Ricinus communis] gi|223532001|gb|EEF33812.1| ATP binding protein, putative [Ricinus communis]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/120 (56%), Positives = 96/120 (80%), Gaps = 1/120 (0%)

Query: 43  QGHFFRQKASEADRKSAEKLVKTRNNEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKH 102
           +G FF  KA  AD KS +KLV+TR+ +VM+LD H +EPKE + LLR+HLTS+SGI +IK+
Sbjct: 388 KGQFFNNKARAADDKSFQKLVETRDADVMSLDLHGLEPKEALRLLRLHLTSISGILSIKY 447

Query: 103 LRIVVGTSDEDSKKEAQKR-MIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFFRKK 161
           LR+++ ++DED+ K A+KR +I K L+KESI+W ++ +G+ ILIQVD IDPKRLSF +K+
Sbjct: 448 LRVIIKSNDEDTSKGARKRNLILKQLEKESIKWNDESDGKTILIQVDAIDPKRLSFAKKQ 507

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086984|emb|CBI33240.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 89/122 (72%), Gaps = 4/122 (3%)

Query: 43  QGHFFRQKASEADRKSAEKLVKTRNNEV---MTLDWHSIEPKEVVCLLRVHLTSLSGIPT 99
           +GHFF  KA EAD +SA K+ +TRN E    M+LD H  + KE + +L+ HL+SLSGIP+
Sbjct: 373 KGHFFHNKAREADEESARKIFETRNVETEDEMSLDLHVHDAKEAILILKSHLSSLSGIPS 432

Query: 100 IKHLRIVVGTSDED-SKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFF 158
           IK L++++ T +E+ SK  A+KR+I KLL+K SI+WTE  N   ILI+VD I+P+RLSF 
Sbjct: 433 IKFLKVIMETGEENISKGGARKRLIMKLLEKHSIKWTEGSNAGIILIRVDEINPQRLSFT 492

Query: 159 RK 160
           RK
Sbjct: 493 RK 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483470|ref|XP_002266411.2| PREDICTED: uncharacterized protein LOC100258824 [Vitis vinifera]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 89/122 (72%), Gaps = 4/122 (3%)

Query: 43  QGHFFRQKASEADRKSAEKLVKTRNNEV---MTLDWHSIEPKEVVCLLRVHLTSLSGIPT 99
           +GHFF  KA EAD +SA K+ +TRN E    M+LD H  + KE + +L+ HL+SLSGIP+
Sbjct: 241 KGHFFHNKAREADEESARKIFETRNVETEDEMSLDLHVHDAKEAILILKSHLSSLSGIPS 300

Query: 100 IKHLRIVVGTSDED-SKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFF 158
           IK L++++ T +E+ SK  A+KR+I KLL+K SI+WTE  N   ILI+VD I+P+RLSF 
Sbjct: 301 IKFLKVIMETGEENISKGGARKRLIMKLLEKHSIKWTEGSNAGIILIRVDEINPQRLSFT 360

Query: 159 RK 160
           RK
Sbjct: 361 RK 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433849|ref|XP_004134709.1| PREDICTED: uncharacterized protein LOC101206014 [Cucumis sativus]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 87/121 (71%), Gaps = 4/121 (3%)

Query: 43  QGHFFRQKASEADRKSAEKLVKTRN----NEVMTLDWHSIEPKEVVCLLRVHLTSLSGIP 98
           +GHFF +KA EAD++S + + + R+    ++ M LD H +  KE V +L+  ++SLSGIP
Sbjct: 381 EGHFFHKKAQEADKQSNQLIFEPRHADTEDDEMLLDLHDLGGKEAVKVLKSQISSLSGIP 440

Query: 99  TIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFF 158
           +IKHL++++   D+++ K + +R++ KLL+KESIEWTE+ NG  ILI +D ID KRLSF 
Sbjct: 441 SIKHLKVIMEADDKNTSKRSCRRLVMKLLEKESIEWTEEENGSYILIHLDTIDRKRLSFV 500

Query: 159 R 159
           +
Sbjct: 501 K 501

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556035|ref|XP_002519052.1| conserved hypothetical protein [Ricinus communis] gi|223541715|gb|EEF43263.1| conserved hypothetical protein [Ricinus communis]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 91/121 (75%), Gaps = 3/121 (2%)

Query: 43  QGHFFRQKASEADRKSAEKLVKTRN---NEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPT 99
           +GHFF +KA +AD +S++K+ +T+N    + +TLD H    KE + LL+ HL+SLSGI +
Sbjct: 379 KGHFFHEKARKADEESSQKIFETKNVDTRDELTLDLHDHGAKEAMRLLKCHLSSLSGIAS 438

Query: 100 IKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFFR 159
           IK+L++++ T +ED+ K A++R++ KLL+KESI+W+E GN  +IL+++D I+ K LSF +
Sbjct: 439 IKYLKVIIETDEEDTSKGARRRVVMKLLEKESIKWSEGGNAGSILVRLDNINQKGLSFAK 498

Query: 160 K 160
           +
Sbjct: 499 R 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527531|ref|XP_004170764.1| PREDICTED: uncharacterized protein LOC101230390, partial [Cucumis sativus]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 86/120 (71%), Gaps = 4/120 (3%)

Query: 44  GHFFRQKASEADRKSAEKLVKTRN----NEVMTLDWHSIEPKEVVCLLRVHLTSLSGIPT 99
           GHFF +KA EAD++S + + + R+    ++ M LD H +  KE V +L+  ++SLSGIP+
Sbjct: 1   GHFFHKKAQEADKQSNQLIFEPRHADTEDDEMLLDLHDLGGKEAVKVLKSQISSLSGIPS 60

Query: 100 IKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFFR 159
           IKHL++++   D+++ K + +R++ KLL+KESIEWTE+ NG  ILI +D ID KRLSF +
Sbjct: 61  IKHLKVIMEADDKNTSKRSCRRLVMKLLEKESIEWTEEENGSYILIHLDTIDRKRLSFVK 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125304|ref|XP_002329772.1| predicted protein [Populus trichocarpa] gi|222870834|gb|EEF07965.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 80/121 (66%), Gaps = 3/121 (2%)

Query: 43  QGHFFRQKASEADRKSAEKLVKTRNNEV---MTLDWHSIEPKEVVCLLRVHLTSLSGIPT 99
           +G+FFR KA E D +S +K+  T+N E    M LD H    K+ +  L+ +   LSGIP+
Sbjct: 384 EGNFFRDKAYEVDEESTQKIFGTKNVETQDQMLLDLHEHGAKDAIRSLKSNFLLLSGIPS 443

Query: 100 IKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKRLSFFR 159
            K L++++ T++ D  K A++R+I KLL+KESI WTE  +   ILIQ+D I+PKRLSF +
Sbjct: 444 FKDLKVIIETNEVDVTKGARRRLIMKLLEKESINWTEGADVGTILIQLDNINPKRLSFAK 503

Query: 160 K 160
           K
Sbjct: 504 K 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7021724|gb|AAF35405.1| hypothetical protein [Arabidopsis thaliana]

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 79/126 (62%), Gaps = 10/126 (7%)

Query: 43  QGHFFRQKASEADRKSAEKLVKTRN--------NEVMTLDWHSIEPKEVVCLLRVHLTSL 94
           +GHFF QKA EAD KS  K++            +EV+T++ +  E KE + LL+  L   
Sbjct: 345 KGHFFGQKAREADDKSVAKMIDVNQEDDSTYEEDEVVTVNMNEHEAKEALRLLKRQLIYF 404

Query: 95  SGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKR 154
           SGI + K+LR+ +G   ED K  ++++ I KLL+ ESI WTE+  G  I+I+VD IDPK+
Sbjct: 405 SGISSFKYLRVQLGEKKEDFK--SKRKHIVKLLEGESIPWTEEDGGLVIMIRVDEIDPKK 462

Query: 155 LSFFRK 160
           LSF +K
Sbjct: 463 LSFAKK 468

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185369|ref|NP_001189900.1| protein silencing defective 5 [Arabidopsis thaliana] gi|332642142|gb|AEE75663.1| protein silencing defective 5 [Arabidopsis thaliana]

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 79/126 (62%), Gaps = 10/126 (7%)

Query: 43  QGHFFRQKASEADRKSAEKLVKTRN--------NEVMTLDWHSIEPKEVVCLLRVHLTSL 94
           +GHFF QKA EAD KS  K++            +EV+T++ +  E KE + LL+  L   
Sbjct: 176 KGHFFGQKAREADDKSVAKMIDVNQEDDSTYEEDEVVTVNMNEHEAKEALRLLKRQLIYF 235

Query: 95  SGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKR 154
           SGI + K+LR+ +G   ED K  ++++ I KLL+ ESI WTE+  G  I+I+VD IDPK+
Sbjct: 236 SGISSFKYLRVQLGEKKEDFK--SKRKHIVKLLEGESIPWTEEDGGLVIMIRVDEIDPKK 293

Query: 155 LSFFRK 160
           LSF +K
Sbjct: 294 LSFAKK 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2090181	490	SDE5 "AT3G15390" [Arabidopsis	0.720	0.236	0.436	2.9e-19
TAIR|locus:2178878	519	AT5G58720 "AT5G58720" [Arabido	0.670	0.208	0.294	6.5e-09

TAIR|locus:2090181 SDE5 "AT3G15390" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 2.9e-19, P = 2.9e-19
 Identities = 55/126 (43%), Positives = 79/126 (62%)

Query:    43 QGHFFRQKASEADRKSAEKLVKTRN--------NEVMTLDWHSIEPKEVVCLLRVHLTSL 94
             +GHFF QKA EAD KS  K++            +EV+T++ +  E KE + LL+  L   
Sbjct:   367 KGHFFGQKAREADDKSVAKMIDVNQEDDSTYEEDEVVTVNMNEHEAKEALRLLKRQLIYF 426

Query:    95 SGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDPKR 154
             SGI + K+LR+ +G   ED K  ++++ I KLL+ ESI WTE+  G  I+I+VD IDPK+
Sbjct:   427 SGISSFKYLRVQLGEKKEDFK--SKRKHIVKLLEGESIPWTEEDGGLVIMIRVDEIDPKK 484

Query:   155 LSFFRK 160
             LSF +K
Sbjct:   485 LSFAKK 490

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=TAS

TAIR|locus:2178878 AT5G58720 "AT5G58720" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 33/112 (29%), Positives = 62/112 (55%)

Query:    40 LNLQGHFFRQKASEADRKSAEKLVKTRNN---EVMTLDWHSIEPKEVVCLLRVHLTSLSG 96
             L+ +G    ++A  AD ++++ +   RN     V+T+D H    K  + LL++HL   S 
Sbjct:   392 LSDKGRVASKQAQRADERASQDIFVARNKGIENVVTIDLHGQHVKPAMKLLKLHLLFGSY 451

Query:    97 IPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVD 148
             +P+I+ LR++ G       K   K+ + KLL++E + + E+  G  +LI++D
Sbjct:   452 VPSIQTLRVITGCGASGFGKSKVKQSVVKLLEREGVRYCEENRG-TLLIKLD 502


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       161   0.00074  107 3  11 22  0.46    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  143 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.76u 0.06s 19.82t   Elapsed:  00:00:01
  Total cpu time:  19.76u 0.06s 19.82t   Elapsed:  00:00:01
  Start:  Fri May 10 11:31:55 2013   End:  Fri May 10 11:31:56 2013

GO:0003684 "damaged DNA binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006298 "mismatch repair" evidence=ISS

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
smart00463	80	SMR Small MutS-related domain.	99.74
PF01713	83	Smr: Smr domain; InterPro: IPR002625 This family i	99.66
PF08590	66	DUF1771: Domain of unknown function (DUF1771); Int	98.74
COG2840	184	Uncharacterized protein conserved in bacteria [Fun	98.48
PRK04946	181	hypothetical protein; Provisional	98.41
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.02
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.97
KOG2401	448	consensus Predicted MutS-related protein involved	92.24
COG1193	753	Mismatch repair ATPase (MutS family) [DNA replicat	89.63
cd00291	69	SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered a	85.43
PF01206	70	TusA: Sulfurtransferase TusA; InterPro: IPR001455	82.95
PLN03218	1060	maturation of RBCL 1; Provisional	81.92
cd03421	67	SirA_like_N SirA_like_N, a protein of unknown func	80.48

>smart00463 SMR Small MutS-related domain

Probab=99.74  E-value=6.5e-18  Score=118.30  Aligned_cols=78  Identities=23%  Similarity=0.362  Sum_probs=70.4

Q ss_pred             ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCC-ccccchHHHHHHHHhCCCcEEecCCCeEEEEEEc
Q 040282           71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDS-KKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVD  148 (161)
Q Consensus        71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~-g~~kiKpaV~klL~e~gi~~~e~~n~G~IlI~L~  148 (161)
                      ++|||||++++||+..|+..|..+...+....+.||||+|+||. |+.+++|+|.++|...++.|.++.|+|+++|.|.
T Consensus         2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~~~~G~~~v~l~   80 (80)
T smart00463        2 WSLDLHGLTVEEALTALDKFLNNARLKGLEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEEGNSGVLVVKLK   80 (80)
T ss_pred             CeEEcCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCCCCCeEEEEEeC
Confidence            68999999999999999999999987663268999999999996 6788999999999999999988569999999873

>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein

Probab=99.66  E-value=1.5e-16  Score=112.10  Aligned_cols=72  Identities=25%  Similarity=0.454  Sum_probs=58.5

Q ss_pred             eecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEe----------cCCCeE
Q 040282           73 LDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTE----------DGNGQA  142 (161)
Q Consensus        73 IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e----------~~n~G~  142 (161)
                      |||||++++||++.|++.|..+...+ ...+.||||+|+||.+.. +||+|.++|++ +++|.+          +.|+|+
T Consensus         1 iDLHG~~~~eA~~~l~~~l~~~~~~~-~~~~~II~G~G~hS~~g~-Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~g~~G~   77 (83)
T PF01713_consen    1 IDLHGLTVEEALRALEEFLDEARQRG-IRELRIITGKGNHSKGGV-LKRAVRRWLEE-GYQYEEVLAYRDAEPEDGNSGA   77 (83)
T ss_dssp             EE-TTS-HHHHHHHHHHHHHHHHHTT-HSEEEEE--STCTCCTSH-HHHHHHHHHHH-THCCTTEEEEEE--CCCTGGGE
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHcC-CCEEEEEeccCCCCCCCc-HHHHHHHHHHh-hhccchhheeeecCCCCCCCeE
Confidence            89999999999999999999987665 489999999999997654 99999999988 766543          129999


Q ss_pred             EEEEE
Q 040282          143 ILIQV  147 (161)
Q Consensus       143 IlI~L  147 (161)
                      ++|.|
T Consensus        78 ~~V~l   82 (83)
T PF01713_consen   78 TIVYL   82 (83)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99987

It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.

>PF08590 DUF1771: Domain of unknown function (DUF1771); InterPro: IPR013899 This domain is almost always found adjacent to IPR002625 from INTERPRO

Probab=98.74  E-value=2.1e-09  Score=73.85  Aligned_cols=38  Identities=26%  Similarity=0.299  Sum_probs=15.2

Q ss_pred             eeCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhCC
Q 040282           31 IACSSFLILLNLQGHFFRQKASEADRKSAEKLVKTRNN   68 (161)
Q Consensus        31 ~~~~s~A~~LSeqGk~~~~ka~ean~kAa~~IF~~rN~   68 (161)
                      -|+++.|++||++||.|.++|+++|.+||+.||..||+
T Consensus        29 ~Gd~~~A~~ls~~gk~~~~~~~~~n~~AA~~I~~~~N~   66 (66)
T PF08590_consen   29 RGDKAAAKELSEEGKQHNEKMKEANRQAAEAIFEERNA   66 (66)
T ss_dssp             ----------------------SHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            48999999999999999999999999999999999984

; PDB: 2VKC_A.

>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.48  E-value=4e-07  Score=74.78  Aligned_cols=77  Identities=13%  Similarity=0.210  Sum_probs=64.5

Q ss_pred             ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCc-cccchHHHHHHHHhCCC--cEEecC----CCeEE
Q 040282           71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSK-KEAQKRMIKKLLKKESI--EWTEDG----NGQAI  143 (161)
Q Consensus        71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g-~~kiKpaV~klL~e~gi--~~~e~~----n~G~I  143 (161)
                      ..|||||+.++||-..|-.-|..+.... .....||+|+|. |.| .+-+|++|-.+|.+.--  -|.+..    ..|.|
T Consensus        97 ~~LDLHG~tq~eAr~~L~~Fi~~a~~~~-~rcv~VihGkG~-s~g~~~vLK~~Vp~WL~qhp~V~a~~~a~~~hGG~GAl  174 (184)
T COG2840          97 ARLDLHGLTQEEARQELGAFIARARAEG-LRCVLVIHGKGR-SKGSKPVLKSQVPRWLTQHPDVLAFHQAPRRHGGDGAL  174 (184)
T ss_pred             eeeeccCCCHHHHHHHHHHHHHHHHHhC-CcEEEEEeCCCc-CCCCchhHHHHHHHHHHhChHHHhhcccchhcCCceEE
Confidence            8999999999999999999999998665 478999999999 988 56789999999999544  255543    66788


Q ss_pred             EEEEcc
Q 040282          144 LIQVDV  149 (161)
Q Consensus       144 lI~L~~  149 (161)
                      +|.|.-
T Consensus       175 yVlL~~  180 (184)
T COG2840         175 YVLLRR  180 (184)
T ss_pred             EEEEec
Confidence            888753

>PRK04946 hypothetical protein; Provisional

Probab=98.41  E-value=9.4e-07  Score=72.21  Aligned_cols=74  Identities=14%  Similarity=0.194  Sum_probs=62.4

Q ss_pred             ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCC--cEEec----CCCeEEE
Q 040282           71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESI--EWTED----GNGQAIL  144 (161)
Q Consensus        71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi--~~~e~----~n~G~Il  144 (161)
                      .+|||||+.++||...|...|..+...+ ...+.||.|+|.     +.+|.+|..+|.+.-.  .|..-    +..|.++
T Consensus        96 ~~LDLhG~~~eeA~~~L~~fl~~a~~~g-~r~v~IIHGkG~-----gvLk~~V~~wL~q~~~V~af~~A~~~~GG~GA~~  169 (181)
T PRK04946         96 LFLDLHGLTQLQAKQELGALIAACRKEH-VFCACVMHGHGK-----HILKQQTPLWLAQHPDVMAFHQAPKEWGGDAALL  169 (181)
T ss_pred             eEEECCCCCHHHHHHHHHHHHHHHHHcC-CCEEEEEcCCCH-----hHHHHHHHHHHcCCchhheeeccCcccCCceEEE
Confidence            8999999999999999999999987655 478999999995     6799999999988655  46542    2789999


Q ss_pred             EEEccc
Q 040282          145 IQVDVI  150 (161)
Q Consensus       145 I~L~~~  150 (161)
                      |.|...
T Consensus       170 VlLk~~  175 (181)
T PRK04946        170 VLIEIE  175 (181)
T ss_pred             EEEecC
Confidence            998654

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.02  E-value=1.4e-05  Score=77.08  Aligned_cols=72  Identities=14%  Similarity=0.189  Sum_probs=61.0

Q ss_pred             cceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCC--cEEecC----CCeEE
Q 040282           70 VMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESI--EWTEDG----NGQAI  143 (161)
Q Consensus        70 ~~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi--~~~e~~----n~G~I  143 (161)
                      ..+|||||+.++||+..|+..|..+...+ ...+.||.|+|.     |.+|.+|.+||.+.-.  .|+..+    +.|+.
T Consensus       704 ~~~lDL~G~~~eeA~~~l~~fl~~a~~~g-~~~v~IIHGkGt-----G~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~Gat  777 (782)
T PRK00409        704 SLELDLRGMRYEEALERLDKYLDDALLAG-YGEVLIIHGKGT-----GKLRKGVQEFLKKHPSVKSFRDAPPNEGGFGVT  777 (782)
T ss_pred             CceEECCCCCHHHHHHHHHHHHHHHHHcC-CCEEEEEcCCCh-----hHHHHHHHHHHcCCCceeeeeecCcccCCCeEE
Confidence            38999999999999999999999887655 489999999985     5899999999998876  365532    78888


Q ss_pred             EEEE
Q 040282          144 LIQV  147 (161)
Q Consensus       144 lI~L  147 (161)
                      +|.|
T Consensus       778 ~V~l  781 (782)
T PRK00409        778 IVEL  781 (782)
T ss_pred             EEEE
Confidence            8876

>TIGR01069 mutS2 MutS2 family protein

Probab=97.97  E-value=1.8e-05  Score=76.35  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             cceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCC--cEEecC----CCeEE
Q 040282           70 VMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESI--EWTEDG----NGQAI  143 (161)
Q Consensus        70 ~~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi--~~~e~~----n~G~I  143 (161)
                      ..+|||||+.++||+..|+..|..+.-.+ ...++||-|+|.     |.+|++|.+||++...  .|+..+    ..|+.
T Consensus       693 ~~~ldl~G~~~~eA~~~l~~~ld~a~~~g-~~~v~IIHGkGt-----G~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~G~t  766 (771)
T TIGR01069       693 SLTLDLRGQRSEEALDRLEKFLNDALLAG-YEVVLIIHGKGS-----GKLRKGVQELLKNHPKVKSFRDAPPNDGGSGVT  766 (771)
T ss_pred             CceEECCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEcCCCh-----hHHHHHHHHHhcCCcceeeecccCcccCCceEE
Confidence            38999999999999999999999987655 479999999995     6799999999999876  354432    67888


Q ss_pred             EEEE
Q 040282          144 LIQV  147 (161)
Q Consensus       144 lI~L  147 (161)
                      +|.|
T Consensus       767 ~V~l  770 (771)
T TIGR01069       767 IVYL  770 (771)
T ss_pred             EEEE
Confidence            8876

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG2401 consensus Predicted MutS-related protein involved in mismatch repair [Replication, recombination and repair]

Probab=92.24  E-value=0.05  Score=49.45  Aligned_cols=106  Identities=12%  Similarity=0.029  Sum_probs=92.9

Q ss_pred             eeCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhCCCc--ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEe
Q 040282           31 IACSSFLILLNLQGHFFRQKASEADRKSAEKLVKTRNNEV--MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVG  108 (161)
Q Consensus        31 ~~~~s~A~~LSeqGk~~~~ka~ean~kAa~~IF~~rN~~~--~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG  108 (161)
                      -+|...++.++.+.+.....++.++.++....|...+...  ..+|.|+++++.|...+...+......+ ..++.++.+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  348 (448)
T KOG2401|consen  270 GKCLRKRHELSDKPRGVLQAEDDYNADELSDEFGNKESIKSEREIDNQRLYKKAAEQKAQPEIEDAINLQ-ASELKPKVS  348 (448)
T ss_pred             cchhhhhhhhhhhhhhhhhcccccchhhhhhhhhhhhhhhhhHHhhhhhHHHHHHHhhhhhhhhhhhhhh-hhhhchhhh
Confidence            4788899999999999999999999999999999888764  9999999999999999999888776655 479999999


Q ss_pred             eCCCCC-ccccchHHHHHHHHhCCCcEEec
Q 040282          109 TSDEDS-KKEAQKRMIKKLLKKESIEWTED  137 (161)
Q Consensus       109 ~G~HS~-g~~kiKpaV~klL~e~gi~~~e~  137 (161)
                      .+.++. +..+++|+....+....+.-...
T Consensus       349 ~~~~~~~~v~~~~~a~~~~~~~~~~~r~~~  378 (448)
T KOG2401|consen  349 LAVKGSYAVAKLKPATQWKLDNEEIERRSE  378 (448)
T ss_pred             hcccccchhhhcchHHHHHHhhhhhhcccc
Confidence            999994 67889999999999888865443

>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

Probab=89.63  E-value=0.7  Score=45.31  Aligned_cols=71  Identities=13%  Similarity=0.167  Sum_probs=54.3

Q ss_pred             cceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCC--cEEecC----CCeEE
Q 040282           70 VMTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESI--EWTEDG----NGQAI  143 (161)
Q Consensus        70 ~~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi--~~~e~~----n~G~I  143 (161)
                      ..++||+|.-+.||+..|+.-+..+--.+ ...+.||=|+|     .|+++..|.++|+++--  .|+..+    ..|+=
T Consensus       676 ~~~ldLrg~r~e~a~~~l~k~i~eail~~-~~~v~iihgkG-----tG~lre~v~~~Lk~~~~v~~~~~~~~~~GG~G~t  749 (753)
T COG1193         676 SNRLDLRGERSEEALDELDKSIDEAILEG-YEKVSIIHGKG-----TGKLREGVQEYLKKHKKVKSFRDAPPNEGGSGVT  749 (753)
T ss_pred             cccccccccccHHHHHHHHhhhHHHHHcC-CcceeEEeeee-----chHHHHHHHHHHHhCCCccCcCCCCcCCCCCCee
Confidence            37999999999999999999999876444 46788987765     46799999999999865  244432    45555


Q ss_pred             EEE
Q 040282          144 LIQ  146 (161)
Q Consensus       144 lI~  146 (161)
                      +|.
T Consensus       750 iv~  752 (753)
T COG1193         750 IVE  752 (753)
T ss_pred             EEe
Confidence            554

>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD

Probab=85.43  E-value=6.2  Score=25.93  Aligned_cols=66  Identities=20%  Similarity=0.144  Sum_probs=46.8

Q ss_pred             eeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEecC-CCeEEEEEE
Q 040282           72 TLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDG-NGQAILIQV  147 (161)
Q Consensus        72 ~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~~-n~G~IlI~L  147 (161)
                      +||+.|+--=+-+-.++..|..+.   +...|.|++....       -..-|.++|++.|+++.+.+ ..|...|.+
T Consensus         1 ~lD~rg~~CP~Pl~~~~~~l~~l~---~g~~l~v~~d~~~-------~~~~i~~~~~~~g~~~~~~~~~~~~~~i~i   67 (69)
T cd00291           1 TLDLRGLPCPLPVLKTKKALEKLK---SGEVLEVLLDDPG-------AVEDIPAWAKETGHEVLEVEEEGGVYRILI   67 (69)
T ss_pred             CccccCCcCCHHHHHHHHHHhcCC---CCCEEEEEecCCc-------HHHHHHHHHHHcCCEEEEEEEeCCEEEEEE
Confidence            489999988888888888888764   2467888865321       24468899999999986543 445555544

Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.

>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase

Probab=82.95  E-value=7.8  Score=25.79  Aligned_cols=66  Identities=18%  Similarity=0.160  Sum_probs=46.9

Q ss_pred             eeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEecC-CCeEEEEEE
Q 040282           72 TLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDG-NGQAILIQV  147 (161)
Q Consensus        72 ~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~~-n~G~IlI~L  147 (161)
                      +||+-|+.==.-+-.+++.|..+..   .+.|.|++....       -..-|.++|++.|+++.+.+ ..|.+.|.+
T Consensus         2 ~lD~rg~~CP~Pll~~~~~l~~l~~---G~~l~v~~d~~~-------~~~di~~~~~~~g~~~~~~~~~~~~~~i~I   68 (70)
T PF01206_consen    2 TLDLRGLSCPMPLLKAKKALKELPP---GEVLEVLVDDPA-------AVEDIPRWCEENGYEVVEVEEEGGEYRILI   68 (70)
T ss_dssp             EEECSS-STTHHHHHHHHHHHTSGT---T-EEEEEESSTT-------HHHHHHHHHHHHTEEEEEEEESSSSEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhcCC---CCEEEEEECCcc-------HHHHHHHHHHHCCCEEEEEEEeCCEEEEEE
Confidence            7999998888888888888888753   368888874221       23568899999999865543 566666554

This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=81.92  E-value=3.3  Score=42.05  Aligned_cols=75  Identities=11%  Similarity=0.191  Sum_probs=54.6

Q ss_pred             ceeecCCCCHHHHHHH-------HHHHHHhhcCCCCcceE-------EEEEeeCCCCCcc-ccchHHHHHHHHhCCCcEE
Q 040282           71 MTLDWHSIEPKEVVCL-------LRVHLTSLSGIPTIKHL-------RIVVGTSDEDSKK-EAQKRMIKKLLKKESIEWT  135 (161)
Q Consensus        71 ~~IDLHGLhVkEAi~i-------Lk~~L~~l~~~~s~~~L-------~VItG~G~HS~g~-~kiKpaV~klL~e~gi~~~  135 (161)
                      +.+|+|++-|.-|.-.       |++++......|. -.+       .+.+|+|+|+... +++-.+|..+|++.+++|.
T Consensus       922 ~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~ 1000 (1060)
T PLN03218        922 IVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPN-VTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQ 1000 (1060)
T ss_pred             eEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCc-ceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999988654       4556655555563 122       2667777776554 3467899999999999998


Q ss_pred             ecCCCeEEEEE
Q 040282          136 EDGNGQAILIQ  146 (161)
Q Consensus       136 e~~n~G~IlI~  146 (161)
                      +.+..|.|.+.
T Consensus      1001 ~~~~~g~~~~~ 1011 (1060)
T PLN03218       1001 GSESHGKLRIN 1011 (1060)
T ss_pred             CCCCCCeEEec
Confidence            87755988764

>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain

Probab=80.48  E-value=12  Score=24.76  Aligned_cols=65  Identities=15%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             eeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEecCCCeEEEEEE
Q 040282           72 TLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQV  147 (161)
Q Consensus        72 ~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~~n~G~IlI~L  147 (161)
                      +||+-|+.==+-+-.+++.| .+..   .+.|.|++.. ..      -+.-|..+|++.|+++...++.|.+.|.+
T Consensus         1 ~lD~rG~~CP~P~l~~k~al-~~~~---g~~l~v~~d~-~~------s~~~i~~~~~~~G~~~~~~~~~~~~~i~I   65 (67)
T cd03421           1 TIDARGLACPQPVIKTKKAL-ELEA---GGEIEVLVDN-EV------AKENVSRFAESRGYEVSVEEKGGEFEITI   65 (67)
T ss_pred             CcccCCCCCCHHHHHHHHHH-hcCC---CCEEEEEEcC-hh------HHHHHHHHHHHcCCEEEEEecCCEEEEEE
Confidence            48999998888888888888 5532   3578887431 11      23468899999999996454555666654

The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
2vkc_A	135	NEDD4-binding protein 2; human BCL3 binding protei	1e-08

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
2vkc_A	135	NEDD4-binding protein 2; human BCL3 binding protei	99.96
3fau_A	82	NEDD4-binding protein 2; SMR, small-MUTS related d	99.8
2d9i_A	96	NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3	99.76
3qd7_X	137	Uncharacterized protein YDAL; alpha/beta/alpha fol	99.31
2zqe_A	83	MUTS2 protein; alpha/beta, ATP-binding, DNA-bindin	99.1
3lvj_C	82	Sulfurtransferase TUSA; protein-protein complex, s	85.54
3hz7_A	87	Uncharacterized protein; alpha-beta protein, struc	80.43

>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1

Probab=99.80  E-value=7.6e-20  Score=128.60  Aligned_cols=75  Identities=17%  Similarity=0.196  Sum_probs=59.7

Q ss_pred             eeecCCCCHHHHHHHHHHHHHhhcC-----CCCcceEEEEEeeCCCCCc-cccchHHHHHHHHhCCCcEEecCCCeEEEE
Q 040282           72 TLDWHSIEPKEVVCLLRVHLTSLSG-----IPTIKHLRIVVGTSDEDSK-KEAQKRMIKKLLKKESIEWTEDGNGQAILI  145 (161)
Q Consensus        72 ~IDLHGLhVkEAi~iLk~~L~~l~~-----~~s~~~L~VItG~G~HS~g-~~kiKpaV~klL~e~gi~~~e~~n~G~IlI  145 (161)
                      +|||||++|+||+..|++.|..+..     .+ ...+.||+|+|+||.+ .+++||+|.++|++++++|.+. |+|++.|
T Consensus         2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g-~~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~-n~G~l~V   79 (82)
T 3fau_A            2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG-KPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCLKV   79 (82)
T ss_dssp             CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCC---------CHHHHHHHHHHHTTCCEEEE-ETTEEEE
T ss_pred             eEECCCCcHHHHHHHHHHHHHHHHHHhhccCC-ceEEEEEECCCCCCCCCcchHHHHHHHHHHhCCCceeeC-CCEEEEE
Confidence            7999999999999999999987643     23 4689999999999975 5789999999999999999887 9999999


Q ss_pred             EEc
Q 040282          146 QVD  148 (161)
Q Consensus       146 ~L~  148 (161)
                      .|.
T Consensus        80 ~l~   82 (82)
T 3fau_A           80 MLK   82 (82)
T ss_dssp             EC-
T ss_pred             EeC
Confidence            873

>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1

Probab=99.76  E-value=9.5e-19  Score=126.18  Aligned_cols=81  Identities=16%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             ceeecCCCCHHHHHHHHHHHHHhhcC----CCCcceEEEEEeeCCCCCc-cccchHHHHHHHHhCCCcEEecCCCeEEEE
Q 040282           71 MTLDWHSIEPKEVVCLLRVHLTSLSG----IPTIKHLRIVVGTSDEDSK-KEAQKRMIKKLLKKESIEWTEDGNGQAILI  145 (161)
Q Consensus        71 ~~IDLHGLhVkEAi~iLk~~L~~l~~----~~s~~~L~VItG~G~HS~g-~~kiKpaV~klL~e~gi~~~e~~n~G~IlI  145 (161)
                      .+|||||++|+||++.|++.|..+..    ......++||+|+|+||.+ .+++||+|.++|++++++|.|. ++|+++|
T Consensus         9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~eg-g~Ga~~V   87 (96)
T 2d9i_A            9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCLKV   87 (96)
T ss_dssp             CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEECC-STTCEEE
T ss_pred             CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccccC-CCcEEEE
Confidence            89999999999999999999987641    1224689999999999976 4899999999999999999776 9999999


Q ss_pred             EEcccCC
Q 040282          146 QVDVIDP  152 (161)
Q Consensus       146 ~L~~~~~  152 (161)
                      .|....+
T Consensus        88 ~L~~~~~   94 (96)
T 2d9i_A           88 MLKSGPS   94 (96)
T ss_dssp             ECCCCCC
T ss_pred             EEccCCC
Confidence            9986544

>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}

Probab=99.31  E-value=4.7e-12  Score=97.63  Aligned_cols=80  Identities=9%  Similarity=0.110  Sum_probs=67.8

Q ss_pred             ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCc-cccchHHHHHHHHhCCC--cEEecC----CCeEE
Q 040282           71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSK-KEAQKRMIKKLLKKESI--EWTEDG----NGQAI  143 (161)
Q Consensus        71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g-~~kiKpaV~klL~e~gi--~~~e~~----n~G~I  143 (161)
                      .+|||||+.++||...|...|..+...+ ...+.||+|+|.||.+ .+.+|++|.++|.+...  .|...+    +.|++
T Consensus        48 ~~LDLHG~~~~EA~~~L~~fL~~a~~~g-~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Gat  126 (137)
T 3qd7_X           48 ASLNLLRQPVEECRKMVFSFIQQALADG-LRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGAC  126 (137)
T ss_dssp             GEEECTTCCHHHHHHHHHHHHHHHHHTT-CSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGEE
T ss_pred             eEEECCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEEE
Confidence            8999999999999999999999887555 4789999999999976 46899999999999886  466532    89999


Q ss_pred             EEEEcccC
Q 040282          144 LIQVDVID  151 (161)
Q Consensus       144 lI~L~~~~  151 (161)
                      +|.|...+
T Consensus       127 ~V~Lr~~~  134 (137)
T 3qd7_X          127 YVALRKTA  134 (137)
T ss_dssp             EEEECC--
T ss_pred             EEEEEchh
Confidence            99997543

>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}

Probab=99.10  E-value=2.9e-10  Score=80.60  Aligned_cols=72  Identities=13%  Similarity=0.282  Sum_probs=61.7

Q ss_pred             ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCC--cEEecC----CCeEEE
Q 040282           71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESI--EWTEDG----NGQAIL  144 (161)
Q Consensus        71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi--~~~e~~----n~G~Il  144 (161)
                      .+|||||+.++||...|+..|..+...+ ...+.||.|+|+     +.+|++|.++|.+...  .|...+    ..|..+
T Consensus         5 ~~lDLhG~~~~eA~~~l~~fl~~a~~~g-~~~v~IIHGkG~-----GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~   78 (83)
T 2zqe_A            5 KEVDLRGLTVAEALLEVDQALEEARALG-LSTLRLLHGKGT-----GALRQAIREALRRDKRVESFADAPPGEGGHGVTV   78 (83)
T ss_dssp             CEEECTTCCHHHHHHHHHHHHHHHHHTT-CSEEEEECCSTT-----SHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEE
T ss_pred             cEEECCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCc-----hHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEE
Confidence            7899999999999999999999887555 479999999997     5799999999999875  466543    479999


Q ss_pred             EEEc
Q 040282          145 IQVD  148 (161)
Q Consensus       145 I~L~  148 (161)
                      |.|.
T Consensus        79 V~Lk   82 (83)
T 2zqe_A           79 VALR   82 (83)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9874

>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A

Probab=85.54  E-value=5.6  Score=26.87  Aligned_cols=68  Identities=18%  Similarity=0.151  Sum_probs=50.8

Q ss_pred             ceeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEecC-CCeEEEEEEc
Q 040282           71 MTLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDG-NGQAILIQVD  148 (161)
Q Consensus        71 ~~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~~-n~G~IlI~L~  148 (161)
                      .+||+-|+.==+-+-.+++.|..+..   .+.|.|++-..     .  -+.-|..||++.|+++...+ ..|.+.|.+.
T Consensus        11 ~~lD~rGl~CP~Pvl~~kkal~~l~~---G~~l~V~~dd~-----~--a~~di~~~~~~~G~~~~~~~~~~~~~~i~I~   79 (82)
T 3lvj_C           11 HTLDALGLRCPEPVMMVRKTVRNMQP---GETLLIIADDP-----A--TTRDIPGFCTFMEHELVAKETDGLPYRYLIR   79 (82)
T ss_dssp             EEEECTTCCTTHHHHHHHHHHHTSCT---TCEEEEEECCT-----T--HHHHHHHHHHHTTCEEEEEECSSSSEEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHHhCCC---CCEEEEEECCc-----c--HHHHHHHHHHHCCCEEEEEEecCCEEEEEEE
Confidence            78999999988888889999887742   36899987321     1  24568899999999986653 6676666553

>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}

Probab=80.43  E-value=6.8  Score=26.98  Aligned_cols=74  Identities=11%  Similarity=0.010  Sum_probs=52.8

Q ss_pred             eeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEecC-CCeEEEEEEccc
Q 040282           72 TLDWHSIEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDG-NGQAILIQVDVI  150 (161)
Q Consensus        72 ~IDLHGLhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~~-n~G~IlI~L~~~  150 (161)
                      +||+-|+-==.-+-.+++.|..+...  ...|.|++..     .  .-..-|..||++.|+++...+ ..|.+.|.+...
T Consensus         3 ~lD~rGl~CP~Pvl~~kkal~~l~~~--G~~L~V~~dd-----~--~a~~dI~~~~~~~G~~v~~~~~~~g~~~i~I~Kg   73 (87)
T 3hz7_A            3 TIDALGQVCPIPVIRAKKALAELGEA--GGVVTVLVDN-----D--ISRQNLQKMAEGMGYQSEYLEKDNGVIEVTIVAG   73 (87)
T ss_dssp             EEECTTCCTTHHHHHHHHHHHTTGGG--CCEEEEEESS-----H--HHHHHHHHHHHHHTCEEEEEECGGGCEEEEEESC
T ss_pred             EEEcCCCCCCHHHHHHHHHHHhccCC--CCEEEEEECC-----c--cHHHHHHHHHHHCCCEEEEEEecCCEEEEEEEEC
Confidence            69999998888888888888877411  2589998721     1  123468899999999986654 788888888766


Q ss_pred             CCCc
Q 040282          151 DPKR  154 (161)
Q Consensus       151 ~~~~  154 (161)
                      .++-
T Consensus        74 ~~~~   77 (87)
T 3hz7_A           74 EGCA   77 (87)
T ss_dssp             C---
T ss_pred             CCce
Confidence            5544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d2d9ia1	83	Nedd4-binding protein 2 {Human (Homo sapiens) [Tax	99.84
d2grea2	233	Deblocking aminopeptidase YhfE {Bacillus cereus [T	86.37

>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SMR domain-like
family: Smr domain
domain: Nedd4-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.4e-22  Score=137.34  Aligned_cols=76  Identities=17%  Similarity=0.177  Sum_probs=67.0

Q ss_pred             ceeecCCCCHHHHHHHHHHHHHhhcC----CCCcceEEEEEeeCCCCC-ccccchHHHHHHHHhCCCcEEecCCCeEEEE
Q 040282           71 MTLDWHSIEPKEVVCLLRVHLTSLSG----IPTIKHLRIVVGTSDEDS-KKEAQKRMIKKLLKKESIEWTEDGNGQAILI  145 (161)
Q Consensus        71 ~~IDLHGLhVkEAi~iLk~~L~~l~~----~~s~~~L~VItG~G~HS~-g~~kiKpaV~klL~e~gi~~~e~~n~G~IlI  145 (161)
                      ++|||||+++.||++.|++.|..+..    ......++||||+|+||. |.+++||+|.++|++++|+|.|. |+|++.|
T Consensus         2 ~~iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~~~~l~IItG~G~hS~~g~~~lk~~V~~~L~~~~~~~~e~-~~G~~~V   80 (83)
T d2d9ia1           2 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCLKV   80 (83)
T ss_dssp             CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEECC-STTCEEE
T ss_pred             CeEECCCCCHHHHHHHHHHHHHHHHHhhhhcCCceEEEEEECCCCCCCCCcchHHHHHHHHHHHCCCceecC-CCcEEEE
Confidence            68999999999999999999987532    223578999999999996 46889999999999999999877 9999999


Q ss_pred             EE
Q 040282          146 QV  147 (161)
Q Consensus       146 ~L  147 (161)
                      .|
T Consensus        81 ~l   82 (83)
T d2d9ia1          81 ML   82 (83)
T ss_dssp             EC
T ss_pred             Ee
Confidence            87

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Deblocking aminopeptidase YhfE
species: Bacillus cereus [TaxId: 1396]

Probab=86.37  E-value=0.34  Score=37.10  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=43.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCcceEEEEEeeCCCCCccccchHHHHHHHHhCCCcEEecCCCeEEEEEEcccCC
Q 040282           78 IEPKEVVCLLRVHLTSLSGIPTIKHLRIVVGTSDEDSKKEAQKRMIKKLLKKESIEWTEDGNGQAILIQVDVIDP  152 (161)
Q Consensus        78 LhVkEAi~iLk~~L~~l~~~~s~~~L~VItG~G~HS~g~~kiKpaV~klL~e~gi~~~e~~n~G~IlI~L~~~~~  152 (161)
                      +|++|.+++|++=+    .+||.            |....++..-|+++|++.|+.+..+ +.|.+++.+.|-++
T Consensus         1 ~~~~e~le~lk~L~----~ips~------------Sg~e~~~~~~i~~~l~~~G~~~~~d-~~gniia~~~G~~~   58 (233)
T d2grea2           1 HHTKETMELIKELV----SIPSP------------SGNTAKIINFIENYVSEWNVETKRN-NKGALILTVKGKND   58 (233)
T ss_dssp             CHHHHHHHHHHHHH----TSCCB------------TTCCHHHHHHHHHHTTTSSSEEEEC-SSSCEEEEECCSEE
T ss_pred             CcHHHHHHHHHHHH----cCCCC------------CCCHHHHHHHHHHHHHHcCCeEEEe-cCCCEEEEecCCCc
Confidence            47899999987643    34541            1123456778999999999999888 88889999987544