Citrus Sinensis ID: 040288

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
MSEALSPRQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKATSTSSSPLPEDPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGTSVENGPSGADELGINDRFEDVTMFLFQGLGFTSKRNAWAGPDHWKYQKSKGR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccHHHHHHccccccEEEEEEEHHHHHHHHHHHHHcHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHcccccccHHcccccccccHHHHHHcccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEEEHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHcHHHcccHHHcccccccHHHHHHHHccccccHHHHHHHccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHccHHccccccHHHHHcccccccccccHcccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccHHHccHHHHHHccccccccEEcccccc
Coil and Loop (DISEMBL)
msealsprqrgtmsnrlhsptrqrqfflgsnNDQLEREQARAARAAAIRRRkatstsssplpedpclseEQIVELLQNCIKLASEnkinqnntWELKLIDHLSEIIKVEtvgdaetnfQKASCTLEAGVKIYSVRVDAVHAQAYKVLGgitragqeddqetitagenvdnrtdaihpkrdferkisplstldssfetfnvkkfdvafavdplshqtsaqfdeggarGLLLNNLGVYGGCRVlfdslevpgrcesyslqnncsdmIDISFAKELIGKMVNDMHAKTEISPTLREIICQfdednqrsQIFSLgenidlrldglggcanachtkeetfvgnedglddssfgnhkawgydqeggtsvengpsgadelgindrfeDVTMFLFQGlgftskrnawagpdhwkyqkskgr
Flexible Loop (DISEMBL)
msealsprqrgtmsnrlhsptrqrQFFLGSNNDQLEREQARAARAAAIRrrkatstsssplpedpcLSEEQIVELLQNCIKLASenkinqnntWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGgitragqeddqetitagenvdnrtdaihpkrdferkisplstldsSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGTSVENGPSGADELGINDRFEDVTMFLFQGLGftskrnawagpdhwkyqkskgr
Low Complexity Region (SEG)
MSEALSPRQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQaraaraaairrrkaTSTSSSPLPEDPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEggarglllnnlgvyggCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGTSVENGPSGADELGINDRFEDVTMFLFQGLGFTSKRNAWAGPDHWKYQKSKGR
Disordered region (IsUnstruct)
**********************************************************************QIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITR****************************************SSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGN*************AWG******************LGINDRFEDVTMFLFQGLGFTSKRNAWAGPDHWK*******
Disordered Region (DISOPRED)
***********************************************************************IVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVL***********************************************FETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLE********************SFAKELIGKMVNDMHAKTEISPTLREIIC**************************GCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGT**********************MFLFQGLGFTSKRNAWAGPDHWKYQKS***
Disordered Region (DISEMBL)
**************NRLHSPTRQRQFFLGSNNDQ******************************PCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGTSVENGPSGADELGINDRFEDVTMFLFQGLGFTSKRNAWAGPDHWKYQKSKGR
Disordered Region (DISPRO)
*****************************************************************CLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGI************************************PLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLE****************MIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDE*******************************EETFVGNEDGLDDSSFGNHKAW***Q***********GADELGINDRFEDVTMFLFQGLGFTSKRNAWAGPDHWKYQK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEALSPRQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKATSTSSSPLPEDPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGTSVENGPSGADELGINDRFEDVTMFLFQGLGFTSKRNAWAGPDHWKYQKSKGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q564K3	671	Condensin complex subunit	yes	no	0.958	0.590	0.542	1e-112
Q9Y7R3	742	Condensin complex subunit	yes	no	0.491	0.273	0.362	1e-27
O13067	699	Condensin complex subunit	N/A	no	0.900	0.532	0.280	1e-25
Q8C156	731	Condensin complex subunit	yes	no	0.854	0.482	0.300	5e-23
Q15003	741	Condensin complex subunit	yes	no	0.813	0.453	0.266	3e-21
P38170	754	Condensin complex subunit	yes	no	0.404	0.221	0.336	1e-20

>sp|Q564K3|CND2_ARATH Condensin complex subunit 2 OS=Arabidopsis thaliana GN=CAPH PE=1 SV=1

 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/435 (54%), Positives = 300/435 (68%), Gaps = 39/435 (8%)

Query: 1   MSEALSPRQR---GTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKAT-ST 56
           M E+L+P  +    + + R+ +PT    FFLGSN+D+LEREQARAARAAA RRR    + 
Sbjct: 1   MDESLTPNPKQKPASTTTRIQAPTSP--FFLGSNDDRLEREQARAARAAASRRRSVIFAR 58

Query: 57  SSSPLPE-DPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE 115
            S P  E DPC  ++QI+EL QNCIKLASENKINQ NTWEL LIDHL EIIKVE   + E
Sbjct: 59  GSQPETESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNTE 118

Query: 116 TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAI 175
           TNFQKASCTLEAGVKIYS+RVD+VH++AYKVLGGITRAG +D  +   A   V+N T+  
Sbjct: 119 TNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDGGDHEDAAGAVENATNQ- 177

Query: 176 HPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGV 235
             K+  E+KISPLSTL+ SF+  NVKKFDVAFAVDPL HQTSAQFDEGGA+GLLLNNLGV
Sbjct: 178 --KKQPEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGV 235

Query: 236 YGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREII 295
           YGGC+VLFDS E+PG+  S + +++ S+ ID+SF KE + +MV +M  K EI P+LR II
Sbjct: 236 YGGCQVLFDSQEIPGKLVSSANKHDKSETIDLSFVKECVEQMVLNMRKKDEIVPSLRAII 295

Query: 296 CQFDEDNQR-SQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWG 354
            QFDE+NQR S  FS G+      D         H  + ++  +++G ++  FG   ++ 
Sbjct: 296 NQFDEENQRPSDTFSCGQQTTESFD-------ISHGNDASYADDDEGYEN--FGT--SFD 344

Query: 355 YDQEGGTSVEN-GPSGADELGIN----------------DRFEDVTMFLFQGLGFTSKRN 397
           Y+ + G   EN GP+ A+ +  N                DR E+V  +LF  LG +SK+N
Sbjct: 345 YEGQSGDVDENFGPNEAEPIYSNFHEEVEPASLQDMDSDDRLENVDDYLFLSLGISSKQN 404

Query: 398 AWAGPDHWKYQKSKG 412
           +WAGPDHWKY+K+KG
Sbjct: 405 SWAGPDHWKYRKTKG 419

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (By similarity). Essential protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9Y7R3|CND2_SCHPO Condensin complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cnd2 PE=1 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 120/218 (55%), Gaps = 15/218 (6%)

Query: 32  NDQLEREQARAARAAAIRRRKATSTSSSPLPED---PCLSEEQIVELLQNCIKLASENKI 88
           N + +RE  R++   +I  R+ +  +SSP       P LS        +  IKLA++NKI
Sbjct: 30  NSRKQRELRRSSALHSITPRRESLNNSSPFNSSHQVPVLSN------FEEWIKLATDNKI 83

Query: 89  NQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVL 147
           N  NTW   LID+  ++     + D E  NFQKASCTL+  VKIY+ R+D+V  +  K+L
Sbjct: 84  NSTNTWNFALIDYFHDM---SLLRDGEDINFQKASCTLDGCVKIYTSRIDSVATETGKLL 140

Query: 148 GGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAF 207
            G+    +   Q     GE+ +N  + +  K++ +R    + TL   FE+   KKF++  
Sbjct: 141 SGLANDSKVLQQ--TEEGEDAENDDEDLQKKKERKRAQRSVKTLVKDFESIRAKKFELEC 198

Query: 208 AVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDS 245
           + DPL  +  A FDE GA+GLL+N+L V    R++FDS
Sbjct: 199 SFDPLFKKMCADFDEDGAKGLLMNHLCVDQHGRIVFDS 236

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. The condensin complex probably also plays a role during interphase in processes such as DNA repair.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O13067|CND2_XENLA Condensin complex subunit 2 OS=Xenopus laevis GN=ncaph PE=1 SV=1

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 197/442 (44%), Gaps = 70/442 (15%)

Query: 5   LSPRQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKATSTSSSPLPED 64
           LSP  R    +   +PT        SN+D+ ER+  R +R   ++   A S +++  P  
Sbjct: 22  LSPATRPQPISAAATPTL---LNFTSNDDERERKLRRMSRVIDLQLSNANSPATAISPAQ 78

Query: 65  -----------PCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGD 113
                      P L+  QI +    CIKL+ ENKI   N + L LID++ +I+K +   D
Sbjct: 79  SRGADTPTSLLPKLNNTQISDHYSTCIKLSQENKITTKNAFGLHLIDYMGDILKHK---D 135

Query: 114 AE-TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQ----EDDQETITAGENV 168
           +E TNF+ A+ TL+A  KIY+VRVDAVHA  YKVLGG+ +  Q     ++QET T  +  
Sbjct: 136 SELTNFKVAAGTLDASAKIYAVRVDAVHADVYKVLGGLGKESQATEDTENQETDTGPQ-- 193

Query: 169 DNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGL 228
           D R +   PKR   RK S   T++ +  + N  + +    +DPL  + +A FDE    G+
Sbjct: 194 DGRKN---PKR---RKCS-YKTIERNLNSINRSETERKSEIDPLFQKAAASFDEFSTAGV 246

Query: 229 LLNNLGVYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEIS 288
            L+ L  +     L    +V     +   +      +D +  K L  + V     K  + 
Sbjct: 247 FLSTLKCHSYHSELHFDADVKPLSTAEETEPPSPGSMDSTELKSLFLQCVE----KRPLC 302

Query: 289 PTLREI-ICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTK---EETFVGNE----- 339
           P+L      Q++ D Q        EN+ L +D      +        E+ FV +E     
Sbjct: 303 PSLSGFRFMQWNSDAQ-------NENLSLLMDKFKKSDHVFDINAEVEDDFVESEAPVAD 355

Query: 340 ----------DGLDDSSFGNHK-AWGYDQEGG--TSVENGPSGADELGINDRFEDVTMFL 386
                     D  D   F  H+ A   +++G   T + NG  G   L ++    + + F 
Sbjct: 356 EFDADVCEGMDAGDIGEFAEHREACRLERKGAQLTQIGNGDIGTMCLQLSSCPGEYSYFS 415

Query: 387 FQGLGFTSKRNAWAGPDHWKYQ 408
            + +        WAGP+HW+++
Sbjct: 416 PRTMSM------WAGPEHWRFR 431

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerase.

Xenopus laevis (taxid: 8355)

>sp|Q8C156|CND2_MOUSE Condensin complex subunit 2 OS=Mus musculus GN=Ncaph PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 191/412 (46%), Gaps = 59/412 (14%)

Query: 31  NNDQLEREQARAARA------------AAIRRRKATSTSSSPLPEDPCLSEEQIVELLQN 78
           N+D+ ER Q R +R             A+  R    ST+ S        +  QI E    
Sbjct: 55  NDDEKERMQRRRSRVFDLQFSTDSIHLASPNRNIDVSTTISKF------TNTQITEHYST 108

Query: 79  CIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGVKIYSVRVD 137
           CIKL+SENKI   N + L LID +SEI+K +   DAE TNF+ A+ TL+A  KIY+VRVD
Sbjct: 109 CIKLSSENKITTKNAFGLHLIDFMSEILKQK---DAEPTNFKVAAGTLDASTKIYAVRVD 165

Query: 138 AVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFET 197
           AVHA  Y+VLGG+ +      +E+  +G+     T+        ++K S   T++ +   
Sbjct: 166 AVHADVYRVLGGLGKDTPPQGEES-HSGDGSTLETERTKKPAKPKKKQS-CKTIEQNLSN 223

Query: 198 FNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYG-GCRVLFDS----------L 246
            NV + D   AVDP+  +T+A FDE    G+ L+ L        +LF S          L
Sbjct: 224 INVSEADGKCAVDPMFQKTAASFDECSTTGVFLSTLHCQDYRSELLFPSDMQTLSSGEPL 283

Query: 247 EVP--GRCESYSLQNNCSDMI-DISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQ 303
           E+P  G  +   L+ +    + D      L G       ++T  + ++  ++ +F +++ 
Sbjct: 284 ELPDLGFVDMTDLEASLQQCVEDRPLCPSLAGFQFTKWDSETH-NESVSALVDKFKKND- 341

Query: 304 RSQIFSL-GENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGTS 362
             Q+F +  E  D   D   G         E FV N D  D S+ G+H+ +   +E    
Sbjct: 342 --QVFDINAEAEDDEEDVPDGPLV------EDFVDN-DEPDLSAAGDHEEFRSWKELCQV 392

Query: 363 VENGPSGADELGINDR-FEDVTMFLFQGLG---FTSKRN--AWAGPDHWKYQ 408
             N     + + + DR  + +  FL    G   + S R    WAGPDHW+++
Sbjct: 393 QSN---QEEVISLEDRDIQVMCSFLSMKPGEYSYFSPRTMKMWAGPDHWRFR 441

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Mus musculus (taxid: 10090)

>sp|Q15003|CND2_HUMAN Condensin complex subunit 2 OS=Homo sapiens GN=NCAPH PE=1 SV=3

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 185/439 (42%), Gaps = 103/439 (23%)

Query: 31  NNDQLEREQARAARAAAIR-----RRKATSTSSSPL---PEDPCLSEEQIVELLQNCIKL 82
           N+D+ ER Q R +R   ++      R   S SS  +      P  +  QI E    CIKL
Sbjct: 58  NDDEKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKL 117

Query: 83  ASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGVKIYSVRVDAVHA 141
           ++ENKI   N + L LID +SEI+K +   D E TNF+ A+ TL+A  KIY+VRVDAVHA
Sbjct: 118 STENKITTKNAFGLHLIDFMSEILKQK---DTEPTNFKVAAGTLDASTKIYAVRVDAVHA 174

Query: 142 QAYKVLGGITR--AGQEDDQETITAGENVDNRT-------DAIHPKRDFERKISPLSTLD 192
             Y+VLGG+ +     E+ +  +  G   +  T          H  R  E+ I+ L    
Sbjct: 175 DVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNL---- 230

Query: 193 SSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLEVPGRC 252
                 NV + D    +DP+  +T+A FDE    G+ L+ L     C+     L  P   
Sbjct: 231 ------NVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTL----HCQDYRSELLFPSDV 280

Query: 253 ESYSL-------QNNCSDMIDISFAKELIGKMVNDMHAKTEISPTL-------------- 291
           ++ S        +  C +M D+   K  + +   D     +I P+L              
Sbjct: 281 QTLSTGEPLELPELGCVEMTDL---KAPLQQCAEDR----QICPSLAGFQFTQWDSETHN 333

Query: 292 REIICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNE----DGLDDSSF 347
             +    D+  +  Q+F +   +D          + C    +  +G++    D  D ++ 
Sbjct: 334 ESVSALVDKFKKNDQVFDINAEVD---------ESDCGDFPDGSLGDDFDANDEPDHTAV 384

Query: 348 GNH---KAWGYD------QEGGTSVENG------PSGADELGINDRFEDVTMFLFQGLGF 392
           G+H   ++W         QE   S+ +G      P  + + G    F   TM +      
Sbjct: 385 GDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSM------ 438

Query: 393 TSKRNAWAGPDHWKYQKSK 411
                 WAGPDHW+++  +
Sbjct: 439 ------WAGPDHWRFRPRR 451

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Homo sapiens (taxid: 9606)

>sp|P38170|CND2_YEAST Condensin complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRN1 PE=1 SV=3

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 26/193 (13%)

Query: 76  LQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVR 135
            +  IK+A++NKIN  N+W   LID+  ++  V   G+   NFQKAS TL+  +KIYS R
Sbjct: 31  FEEWIKMATDNKINSRNSWNFALIDYFYDL-DVLKDGENNINFQKASATLDGCIKIYSSR 89

Query: 136 VDAVHAQAYKVLGGITR-----AGQEDDQETIT------------------AGENVDNRT 172
           VD+V  +  K+L G+ +     A   DD                        G  + N  
Sbjct: 90  VDSVTTETGKLLSGLAQRKTNGASNGDDSNGGNGEGLGGDSDEANIEIDPLTGMPISNDP 149

Query: 173 DAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNN 232
           D  + +R    ++  L T    FET  +K+ D    +DPL  +    FDEGGA+ LLLN 
Sbjct: 150 DVNNTRRRVYNRV--LETTLVEFETIKMKELDQELIIDPLFKKALVDFDEGGAKSLLLNT 207

Query: 233 LGVYGGCRVLFDS 245
           L +    RV+FD+
Sbjct: 208 LNIDNTARVIFDA 220

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. The condensin complex probably also plays a role during interphase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
225447089	674	PREDICTED: condensin complex subunit 2-l	0.953	0.584	0.581	1e-122
297739187	669	unnamed protein product [Vitis vinifera]	0.953	0.588	0.581	1e-122
356544788	668	PREDICTED: condensin complex subunit 2-l	0.958	0.592	0.517	1e-116
145360548	671	condensin complex subunit 2 [Arabidopsis	0.958	0.590	0.542	1e-110
255577157	663	conserved hypothetical protein [Ricinus	0.900	0.561	0.569	1e-110
449468466	667	PREDICTED: LOW QUALITY PROTEIN: condensi	0.956	0.592	0.543	1e-108
297826699	704	predicted protein [Arabidopsis lyrata su	0.956	0.561	0.510	1e-107
356517661	680	PREDICTED: LOW QUALITY PROTEIN: condensi	0.958	0.582	0.517	1e-107
3298547	704	hypothetical protein [Arabidopsis thalia	0.958	0.562	0.507	1e-105
224131626	605	condensin complex components subunit [Po	0.886	0.604	0.558	1e-102

>gi|225447089|ref|XP_002270622.1| PREDICTED: condensin complex subunit 2-like [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/437 (58%), Positives = 301/437 (68%), Gaps = 43/437 (9%)

Query: 1   MSEALSP------RQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKAT 54
           M+E LSP      +QR  MS R+ SPT    FFLGSN+DQLER QARAARAA+IRR+   
Sbjct: 1   MAETLSPNPATVQKQRALMSARIQSPTSP--FFLGSNDDQLERAQARAARAASIRRKSVA 58

Query: 55  STSSSPLPEDPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDA 114
           + +  P   DPCL +EQI+EL QNCIKLASENKINQ NTWEL LIDHL EIIKVE   DA
Sbjct: 59  AHAPPPPDPDPCLGKEQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEEEDDA 118

Query: 115 ETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDA 174
           ETNFQKASCTLEAGVKIYS+RVD+VH++AYKVLGGI R GQE++Q+ +    NV++  + 
Sbjct: 119 ETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINRVGQENEQDNVVEDANVNSEQEE 178

Query: 175 IHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLG 234
            H K++ +RKISPLSTL+SSFE  N+KKFDVAFAVDPL HQTSAQFDEGGA+GLLLNNLG
Sbjct: 179 GHSKKELDRKISPLSTLESSFEVLNLKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLG 238

Query: 235 VYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREI 294
           VYGGCRVLFDS E+PG C S + + + SD ID+SFAKE I +MV +M  K EISPTLR I
Sbjct: 239 VYGGCRVLFDSFEIPGNCMSCATELDKSDTIDLSFAKESIEQMVLNMRTKDEISPTLRNI 298

Query: 295 ICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETF--VGNEDGLDDSSFGNHKA 352
           + +FDE+NQR             LD       + H  EE    V NE   D  +F N   
Sbjct: 299 VDRFDENNQRP------------LDTFS----SAHKSEEQVNSVYNEAESDVDAFENCNT 342

Query: 353 WGYDQEGGTSV-----------------ENGPSGADELGINDRFEDVTMFLFQGLGFTSK 395
           W +D +  TSV                 E+GP    E  ++DRFE V  +LF  LGF SK
Sbjct: 343 WTFDHDDRTSVVDEDSYGADPVFPVHHEESGPFTVVEPDMDDRFERVDDYLFLSLGFASK 402

Query: 396 RNAWAGPDHWKYQKSKG 412
           +NAWAGPDHWKY+K KG
Sbjct: 403 QNAWAGPDHWKYRKVKG 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739187|emb|CBI28838.3| unnamed protein product [Vitis vinifera]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/437 (58%), Positives = 301/437 (68%), Gaps = 43/437 (9%)

Query: 1   MSEALSP------RQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKAT 54
           M+E LSP      +QR  MS R+ SPT    FFLGSN+DQLER QARAARAA+IRR+   
Sbjct: 1   MAETLSPNPATVQKQRALMSARIQSPTSP--FFLGSNDDQLERAQARAARAASIRRKSVA 58

Query: 55  STSSSPLPEDPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDA 114
           + +  P   DPCL +EQI+EL QNCIKLASENKINQ NTWEL LIDHL EIIKVE   DA
Sbjct: 59  AHAPPPPDPDPCLGKEQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEEEDDA 118

Query: 115 ETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDA 174
           ETNFQKASCTLEAGVKIYS+RVD+VH++AYKVLGGI R GQE++Q+ +    NV++  + 
Sbjct: 119 ETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINRVGQENEQDNVVEDANVNSEQEE 178

Query: 175 IHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLG 234
            H K++ +RKISPLSTL+SSFE  N+KKFDVAFAVDPL HQTSAQFDEGGA+GLLLNNLG
Sbjct: 179 GHSKKELDRKISPLSTLESSFEVLNLKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLG 238

Query: 235 VYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREI 294
           VYGGCRVLFDS E+PG C S + + + SD ID+SFAKE I +MV +M  K EISPTLR I
Sbjct: 239 VYGGCRVLFDSFEIPGNCMSCATELDKSDTIDLSFAKESIEQMVLNMRTKDEISPTLRNI 298

Query: 295 ICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETF--VGNEDGLDDSSFGNHKA 352
           + +FDE+NQR             LD       + H  EE    V NE   D  +F N   
Sbjct: 299 VDRFDENNQRP------------LDTFS----SAHKSEEQVNSVYNEAESDVDAFENCNT 342

Query: 353 WGYDQEGGTSV-----------------ENGPSGADELGINDRFEDVTMFLFQGLGFTSK 395
           W +D +  TSV                 E+GP    E  ++DRFE V  +LF  LGF SK
Sbjct: 343 WTFDHDDRTSVVDEDSYGADPVFPVHHEESGPFTVVEPDMDDRFERVDDYLFLSLGFASK 402

Query: 396 RNAWAGPDHWKYQKSKG 412
           +NAWAGPDHWKY+K KG
Sbjct: 403 QNAWAGPDHWKYRKVKG 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544788|ref|XP_003540829.1| PREDICTED: condensin complex subunit 2-like [Glycine max]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/429 (51%), Positives = 284/429 (66%), Gaps = 33/429 (7%)

Query: 1   MSEALSPRQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKATSTSSSP 60
           M+E LSP        RL   +    F LGSN+D+LER QAR ARA AIRR+         
Sbjct: 1   MAETLSPNPTMDQKQRLRILSPTSPFILGSNDDKLERAQARDARATAIRRKSLALNQPLQ 60

Query: 61  LPEDPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQK 120
              DPCL+++QI++L QNCIKLASENKINQ NTWEL LIDHL++IIK E   DAETNFQK
Sbjct: 61  PNSDPCLNKQQIIDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEEENDAETNFQK 120

Query: 121 ASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRD 180
           ASCTLEAGVKIYS+RVD+VH++AYKVLGG+ RAGQE +++T   G N++  +  +  +++
Sbjct: 121 ASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEEDTTLNGVNIE--SGQVESRKE 178

Query: 181 FERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCR 240
             +K+SPLSTL+SSFE  NVKKFD AF VDPL  QT+A+FDEGGA+GLL+NNLGVYG CR
Sbjct: 179 TSKKLSPLSTLESSFEALNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGDCR 238

Query: 241 VLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDE 300
           VLFDS EVP +C +   Q++ SD ID+SFAK+ I +MV DM  K EISP+LR I+ QFDE
Sbjct: 239 VLFDSQEVPAKCMASQNQSDISDTIDLSFAKDCIDQMVLDMRVKDEISPSLRTIVNQFDE 298

Query: 301 DNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGG 360
            N+R          D++L G     +  +        NE+G     + N  AW  D++  
Sbjct: 299 SNRRP--------ADIQLQGQNSAEDLDNAD-----NNENGFYREEYENCMAWSDDRDDQ 345

Query: 361 TSVENG------------------PSGADELGINDRFEDVTMFLFQGLGFTSKRNAWAGP 402
           T V +                   P  + E+ ++ RFE+V  +LF  LGF+SK+NAWAGP
Sbjct: 346 TVVADPGYNDADPSFPSYPQDNDEPFPSPEIDMDGRFENVDGYLFLSLGFSSKQNAWAGP 405

Query: 403 DHWKYQKSK 411
           DHWKY+KSK
Sbjct: 406 DHWKYRKSK 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145360548|ref|NP_180818.2| condensin complex subunit 2 [Arabidopsis thaliana] gi|75217252|sp|Q564K3.1|CND2_ARATH RecName: Full=Condensin complex subunit 2; AltName: Full=Chromosome-associated protein H; Short=AtCAP-H; AltName: Full=Non-SMC condensin I complex subunit H; AltName: Full=Protein EMBRYO DEFECTIVE 2795 gi|62533251|dbj|BAD95575.1| chromosome associate protein subunit H [Arabidopsis thaliana] gi|330253609|gb|AEC08703.1| condensin complex subunit 2 [Arabidopsis thaliana]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/435 (54%), Positives = 300/435 (68%), Gaps = 39/435 (8%)

Query: 1   MSEALSPRQR---GTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKAT-ST 56
           M E+L+P  +    + + R+ +PT    FFLGSN+D+LEREQARAARAAA RRR    + 
Sbjct: 1   MDESLTPNPKQKPASTTTRIQAPTSP--FFLGSNDDRLEREQARAARAAASRRRSVIFAR 58

Query: 57  SSSPLPE-DPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE 115
            S P  E DPC  ++QI+EL QNCIKLASENKINQ NTWEL LIDHL EIIKVE   + E
Sbjct: 59  GSQPETESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNTE 118

Query: 116 TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAI 175
           TNFQKASCTLEAGVKIYS+RVD+VH++AYKVLGGITRAG +D  +   A   V+N T+  
Sbjct: 119 TNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDGGDHEDAAGAVENATNQ- 177

Query: 176 HPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGV 235
             K+  E+KISPLSTL+ SF+  NVKKFDVAFAVDPL HQTSAQFDEGGA+GLLLNNLGV
Sbjct: 178 --KKQPEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGV 235

Query: 236 YGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREII 295
           YGGC+VLFDS E+PG+  S + +++ S+ ID+SF KE + +MV +M  K EI P+LR II
Sbjct: 236 YGGCQVLFDSQEIPGKLVSSANKHDKSETIDLSFVKECVEQMVLNMRKKDEIVPSLRAII 295

Query: 296 CQFDEDNQR-SQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWG 354
            QFDE+NQR S  FS G+      D         H  + ++  +++G ++  FG   ++ 
Sbjct: 296 NQFDEENQRPSDTFSCGQQTTESFD-------ISHGNDASYADDDEGYEN--FGT--SFD 344

Query: 355 YDQEGGTSVEN-GPSGADELGIN----------------DRFEDVTMFLFQGLGFTSKRN 397
           Y+ + G   EN GP+ A+ +  N                DR E+V  +LF  LG +SK+N
Sbjct: 345 YEGQSGDVDENFGPNEAEPIYSNFHEEVEPASLQDMDSDDRLENVDDYLFLSLGISSKQN 404

Query: 398 AWAGPDHWKYQKSKG 412
           +WAGPDHWKY+K+KG
Sbjct: 405 SWAGPDHWKYRKTKG 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577157|ref|XP_002529462.1| conserved hypothetical protein [Ricinus communis] gi|223531078|gb|EEF32928.1| conserved hypothetical protein [Ricinus communis]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/411 (56%), Positives = 279/411 (67%), Gaps = 39/411 (9%)

Query: 19  SPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKATSTSSSPLPED--PCLSEEQIVELL 76
           SPT    F LGSNN QLER QARAA  AA  RRKAT+ +SSP P    PCLS++QI+EL 
Sbjct: 14  SPTT-NSFLLGSNNGQLERLQARAAARAAAIRRKATTFASSP-PRSHVPCLSQDQIIELF 71

Query: 77  QNCIKLASENKINQNNTWELKLIDHLSEIIKVETVG--DAETNFQKASCTLEAGVKIYSV 134
           QNCIKLA+ENKIN  NTWELKLIDHLSEII+VET G  D ETNFQKAS TLEAGVKIYSV
Sbjct: 72  QNCIKLATENKINLKNTWELKLIDHLSEIIEVETGGGGDTETNFQKASFTLEAGVKIYSV 131

Query: 135 RVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSS 194
           RVD++H++AYK+L  I RAG ED+Q   + GENV  + D  H K++ E+KIS LSTL+ S
Sbjct: 132 RVDSLHSEAYKLLAEINRAGLEDEQ---SNGENVSRQQDDSHIKKESEKKISSLSTLEFS 188

Query: 195 FETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLEVPGRCES 254
           FE  NVK+FD AFAVDP+ HQTSAQFDEG  +GLLLNNLGVYGGCRVLFDS EVPG+C+ 
Sbjct: 189 FEALNVKRFDFAFAVDPVYHQTSAQFDEGRTKGLLLNNLGVYGGCRVLFDSFEVPGKCKL 248

Query: 255 YSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQRSQ-IFSLGEN 313
           +  QN+ SD IDISFAKE+I +M   M  + +ISPTL +IIC FDE NQRS     + +N
Sbjct: 249 HLHQNDFSDKIDISFAKEIIEQMAMSMLEQNQISPTLSDIICHFDEHNQRSSDTLDVDKN 308

Query: 314 IDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGT------------ 361
            D   DG              F  +E  +D SSFGN +AW  + +  T            
Sbjct: 309 SDATADG--------------FNNSEVEMDKSSFGNFEAWTSNHDDETIDFKERFSCDST 354

Query: 362 ---SVENGPSGADELGINDRFEDVTMFLFQGLGFTSKRNAWAGPDHWKYQK 409
                +N  S + E  +    E+V MFL QGLG  SK+N W GPDHWK++K
Sbjct: 355 LQRHSDNHSSISFESDVYQSLENVAMFLIQGLGIPSKKNIWVGPDHWKFRK 405

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468466|ref|XP_004151942.1| PREDICTED: LOW QUALITY PROTEIN: condensin complex subunit 2-like [Cucumis sativus] gi|449490353|ref|XP_004158580.1| PREDICTED: LOW QUALITY PROTEIN: condensin complex subunit 2-like [Cucumis sativus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/436 (54%), Positives = 299/436 (68%), Gaps = 41/436 (9%)

Query: 1   MSEALSP------RQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKAT 54
           M+E LSP      +QR  + ++L SPT    FFLGSN+D+LER QARAARAAA RR+   
Sbjct: 1   MAETLSPNPSIPQKQRRPVPSQLQSPTSP--FFLGSNDDKLERAQARAARAAANRRK--- 55

Query: 55  STSSSPLP-EDP--CLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETV 111
           S +++ LP +DP   L + QI+EL QNCIKLASENKINQ NTWEL LIDHL+EIIKVE  
Sbjct: 56  SIATNLLPRQDPNIFLDKRQILELFQNCIKLASENKINQKNTWELNLIDHLAEIIKVEE- 114

Query: 112 GDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNR 171
            D ETNFQKASCTLEAGVKIYS+RVDA H++AYKVLGG+ RAGQE++QETIT   N +N 
Sbjct: 115 EDTETNFQKASCTLEAGVKIYSLRVDATHSEAYKVLGGMNRAGQENEQETITQEGNPEND 174

Query: 172 TDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLN 231
            + +  +++ ++K+SPLSTL+ SFE  NVKKFDVAFAVDPL HQTSAQFDEGGA+GLL+N
Sbjct: 175 QEEVRSRKEQDKKLSPLSTLEPSFEALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLMN 234

Query: 232 NLGVYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTL 291
           NLGVYG CRVLFDS EVPG+C S+  +   SDMIDISFAK+ I +MV +M  K EISPTL
Sbjct: 235 NLGVYGACRVLFDSDEVPGKCMSFENRQGSSDMIDISFAKDCIEEMVLNMRVKDEISPTL 294

Query: 292 REIICQFDEDNQRSQIF-----------SLGENIDLRLDGLG----GCANACHTKEETFV 336
           R I+  FDEDN R   +            +  ++D R  G      G  N  +  + + V
Sbjct: 295 RNIVNLFDEDNIRPSDYCSSGPKAAEQVHMDYDVDDRFHGDDFENFGTENYDNDDQTSMV 354

Query: 337 GNEDGLDDSSFGNHKAWGYDQEGGTSVENGPSGADELGINDRFEDVTMFLFQGLGFTSKR 396
            +  G  D+ F       Y++E  ++  + P   + LG      +V  +L   LGFT ++
Sbjct: 355 DDGPGGGDADFST-----YNEESVSTTYHDPDVEERLG------NVDEYLISCLGFTVRQ 403

Query: 397 NAWAGPDHWKYQKSKG 412
           NAWAGP+HWKY+K+KG
Sbjct: 404 NAWAGPEHWKYRKTKG 419

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826699|ref|XP_002881232.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297327071|gb|EFH57491.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/466 (51%), Positives = 301/466 (64%), Gaps = 71/466 (15%)

Query: 1   MSEALSP--RQR-GTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKATSTS 57
           M E+L+P  +QR  + + R+ +PT    FFLGSN+D+LEREQARAARAAA RRR     +
Sbjct: 1   MDESLTPNPKQRPASTTTRIQAPTSP--FFLGSNDDRLEREQARAARAAASRRRSVI-FA 57

Query: 58  SSPLPE---DPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDA 114
             P PE   DPC  ++QI+EL QNCIKLASENKINQ NTWEL LIDHL EIIKVE   +A
Sbjct: 58  CGPQPESESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNA 117

Query: 115 ETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDA 174
           ETNFQKASCTLEAGVKIYS+RVD+VH++AYKVLGGITRAG +D  +   A   V+N T+ 
Sbjct: 118 ETNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDSGDNEDAAGTVENATNQ 177

Query: 175 IHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLG 234
              K+  E+KISPLSTL+ SF+  NVKKFDVAFAVDPL HQTSAQFDEGGA+GLLLNNLG
Sbjct: 178 ---KKQTEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLG 234

Query: 235 VYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAK----------------------- 271
           VYGGC+VLFDS E+PG+  S + +++ S+ ID+SFAK                       
Sbjct: 235 VYGGCQVLFDSQEIPGKLVSSANKHDKSETIDLSFAKGLALLADMPRSTIVHVLLHYAFS 294

Query: 272 -------ELIGKMVNDMHAKTEISPTLREIICQFDEDNQR-SQIFSLGENIDLRLDGLGG 323
                  E + +MV +M  K EI P+LR II QFDE+NQR S  FS G+      D    
Sbjct: 295 EFVVKFVECVEQMVLNMRKKDEIVPSLRAIINQFDEENQRPSDTFSCGQQTTESFD---- 350

Query: 324 CANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGTSVEN-----------------G 366
                H  + ++  +++G ++  FG   ++ Y+ + G   EN                  
Sbjct: 351 ---ISHANDASYADDDEGYEN--FGT--SFDYEGQSGDVDENFGLNDAEPTYSNFHEEVE 403

Query: 367 PSGADELGINDRFEDVTMFLFQGLGFTSKRNAWAGPDHWKYQKSKG 412
           P+   +L   DR E+V  +LF  LG +SK+N+WAGPDHWKY+K+KG
Sbjct: 404 PASLQDLDSEDRLENVDDYLFLSLGISSKQNSWAGPDHWKYRKTKG 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517661|ref|XP_003527505.1| PREDICTED: LOW QUALITY PROTEIN: condensin complex subunit 2-like [Glycine max]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/437 (51%), Positives = 284/437 (64%), Gaps = 41/437 (9%)

Query: 1   MSEALSPRQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKATSTSSSP 60
           M+E LSP        RL   +    F LGSNNDQLER +AR ARAAA RR+         
Sbjct: 1   MAETLSPNPAMGRKQRLRIQSPTSPFVLGSNNDQLERARARDARAAANRRKSLALNQPLQ 60

Query: 61  LPEDPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQK 120
               P L+++QI++L QNCIKLASENKINQ NTWEL LIDHL++IIK E   DAETNFQK
Sbjct: 61  ANSHPGLNKQQILDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEEEHDAETNFQK 120

Query: 121 ASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRD 180
           ASCTLEAGVKIYS+RVD+VH++AYKVLGG+ RAGQE +++T   G N+++R +    +++
Sbjct: 121 ASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEEDTTLDGVNIESRQE--ESRKE 178

Query: 181 FERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCR 240
             +K+SPLSTL+SSFE  NVKKFD AF VDPL  QT+A+FDEGGA+GLL+NNLGVYGGCR
Sbjct: 179 TSKKLSPLSTLESSFEALNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGGCR 238

Query: 241 VLFDSLEVPGRCESYSLQNNCSDMIDISFAKEL--------IGKMVNDMHAKTEISPTLR 292
           VLFDS EVP +C +   Q++ SD ID+SF K L        I +MV DM  K EISP+LR
Sbjct: 239 VLFDSQEVPAKCMASQNQSDISDTIDLSFLKGLXCPEYYDCIDQMVLDMRVKDEISPSLR 298

Query: 293 EIICQFDEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKA 352
            I+ QFDE N+R          D++L G     +      +    NE+G D   + N  A
Sbjct: 299 TIVNQFDESNRRP--------TDIQLQGPSSAEDL-----DNADNNENGFDREEYENCTA 345

Query: 353 WGYDQEGGTSVEN------GPS------------GADELGINDRFEDVTMFLFQGLGFTS 394
           W  D +  T V +       PS             + E  ++DRFE+V  +LF  LGF+S
Sbjct: 346 WSDDHDDQTVVADLDYNDADPSFSSYPQDNAEQFPSPETDMDDRFENVEGYLFLSLGFSS 405

Query: 395 KRNAWAGPDHWKYQKSK 411
           K+NAWAGPDHWKY+KSK
Sbjct: 406 KQNAWAGPDHWKYRKSK 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3298547|gb|AAC25941.1| hypothetical protein [Arabidopsis thaliana]

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/465 (50%), Positives = 300/465 (64%), Gaps = 69/465 (14%)

Query: 1   MSEALSPRQR---GTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKAT-ST 56
           M E+L+P  +    + + R+ +PT    FFLGSN+D+LEREQARAARAAA RRR    + 
Sbjct: 1   MDESLTPNPKQKPASTTTRIQAPTSP--FFLGSNDDRLEREQARAARAAASRRRSVIFAR 58

Query: 57  SSSPLPE-DPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE 115
            S P  E DPC  ++QI+EL QNCIKLASENKINQ NTWEL LIDHL EIIKVE   + E
Sbjct: 59  GSQPETESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNTE 118

Query: 116 TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAI 175
           TNFQKASCTLEAGVKIYS+RVD+VH++AYKVLGGITRAG +D  +   A   V+N T+  
Sbjct: 119 TNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDGGDHEDAAGAVENATNQ- 177

Query: 176 HPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGV 235
             K+  E+KISPLSTL+ SF+  NVKKFDVAFAVDPL HQTSAQFDEGGA+GLLLNNLGV
Sbjct: 178 --KKQPEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGV 235

Query: 236 YGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAK------------------------ 271
           YGGC+VLFDS E+PG+  S + +++ S+ ID+SF K                        
Sbjct: 236 YGGCQVLFDSQEIPGKLVSSANKHDKSETIDLSFVKGLALLADMPRSTIVHVLLHYAFSD 295

Query: 272 ------ELIGKMVNDMHAKTEISPTLREIICQFDEDNQR-SQIFSLGENIDLRLDGLGGC 324
                 E + +MV +M  K EI P+LR II QFDE+NQR S  FS G+      D     
Sbjct: 296 VVVKFVECVEQMVLNMRKKDEIVPSLRAIINQFDEENQRPSDTFSCGQQTTESFD----- 350

Query: 325 ANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGTSVEN-GPSGADELGIN------- 376
               H  + ++  +++G ++  FG   ++ Y+ + G   EN GP+ A+ +  N       
Sbjct: 351 --ISHGNDASYADDDEGYEN--FGT--SFDYEGQSGDVDENFGPNEAEPIYSNFHEEVEP 404

Query: 377 ---------DRFEDVTMFLFQGLGFTSKRNAWAGPDHWKYQKSKG 412
                    DR E+V  +LF  LG +SK+N+WAGPDHWKY+K+KG
Sbjct: 405 ASLQDMDSDDRLENVDDYLFLSLGISSKQNSWAGPDHWKYRKTKG 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131626|ref|XP_002321137.1| condensin complex components subunit [Populus trichocarpa] gi|222861910|gb|EEE99452.1| condensin complex components subunit [Populus trichocarpa]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/424 (55%), Positives = 271/424 (63%), Gaps = 58/424 (13%)

Query: 1   MSEALSPRQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRK--ATSTSS 58
           M E LSP+QR     R+ SPT    FFLGSN+D LER QARAARAAAIRR+   A S   
Sbjct: 1   MGEILSPKQRLP---RIQSPTSP--FFLGSNDDNLERAQARAARAAAIRRKTIAAHSQPP 55

Query: 59  SPLPEDPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNF 118
                DPCL ++QI++L  NCIKLASENKINQ NTWEL LIDHL+EIIKVE   D ETNF
Sbjct: 56  PLQDPDPCLDKQQILDLFHNCIKLASENKINQKNTWELNLIDHLAEIIKVEEESDTETNF 115

Query: 119 QKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPK 178
           QKASCTLEAGVKIYS+RVD+VH++AYKVLGGI RAG ED+ E                  
Sbjct: 116 QKASCTLEAGVKIYSLRVDSVHSEAYKVLGGINRAGLEDEPE------------------ 157

Query: 179 RDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGG 238
            DF  +ISPLSTL+ SFE  NVKKFDVAFAVDPL HQTSAQFDEGGA+GLLLNNLGVYGG
Sbjct: 158 -DF-MQISPLSTLEPSFEALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYGG 215

Query: 239 CRVLFDSLEVPGRCESYSLQNNCSDMIDISFAK----------ELIGKMVNDMHAKTEIS 288
           CRVLFDS EVPG+C S   Q    DMI++SFA+          + I +MV +M  + EIS
Sbjct: 216 CRVLFDSQEVPGKCTSCENQREGLDMIELSFARGVRQFLIYFPDYIEQMVLNMRTQDEIS 275

Query: 289 PTLREIICQFDEDNQRS-QIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSF 347
           PTL  I+ QFDEDN+R   IF   +           C +  H  + T+  NE   D  + 
Sbjct: 276 PTLGTIVDQFDEDNKRPLNIFPCHQT----------CGDQFHEDDRTY-NNEVEFDGETH 324

Query: 348 GNHKAWGYDQEGGTSVENGPSGADELGINDRFEDVTMFLFQGLGFTSKRNAWAGPDHWKY 407
            N   W          E  P   D    +DRF+ V   LF  LGFTSKRN WAGPDHWKY
Sbjct: 325 ENCGPWN---------EREPHLFDNPDTDDRFDKVDWPLFLSLGFTSKRNDWAGPDHWKY 375

Query: 408 QKSK 411
           QK K
Sbjct: 376 QKVK 379

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2060273	671	EMB2795 "EMBRYO DEFECTIVE 2795	0.980	0.603	0.5	3e-94
MGI|MGI:2444777	731	Ncaph "non-SMC condensin I com	0.779	0.440	0.305	6.6e-25
UNIPROTKB|C9J470	608	NCAPH "Condensin complex subun	0.796	0.541	0.277	1.7e-23
UNIPROTKB|E9PHA2	730	NCAPH "Condensin complex subun	0.796	0.450	0.277	2.6e-23
UNIPROTKB|Q15003	741	NCAPH "Condensin complex subun	0.796	0.443	0.277	2.7e-23
UNIPROTKB|F1MH70	724	NCAPH "Uncharacterized protein	0.368	0.209	0.428	3.8e-23
ASPGD|ASPL0000016922	886	AN4265 [Emericella nidulans (t	0.414	0.193	0.361	4.3e-22
POMBASE|SPCC306.03c	742	cnd2 "condensin complex non-SM	0.501	0.278	0.303	1.9e-21
ZFIN|ZDB-GENE-070112-652	690	ncaph "non-SMC condensin I com	0.382	0.228	0.389	3.1e-21
UNIPROTKB|G4MUD3	871	MGG_01639 "Condensin complex c	0.670	0.318	0.316	1.2e-20

TAIR|locus:2060273 EMB2795 "EMBRYO DEFECTIVE 2795" [Arabidopsis thaliana (taxid:3702)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 213/426 (50%), Positives = 271/426 (63%)

Query:     1 MSEALSP--RQR-GTMSNRLHSPTRQRQFFLGSNNDQLEREQXXXXXXXXXXXXXXT-ST 56
             M E+L+P  +Q+  + + R+ +PT    FFLGSN+D+LEREQ                + 
Sbjct:     1 MDESLTPNPKQKPASTTTRIQAPTSP--FFLGSNDDRLEREQARAARAAASRRRSVIFAR 58

Query:    57 SSSPLPE-DPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE 115
              S P  E DPC  ++QI+EL QNCIKLASENKINQ NTWEL LIDHL EIIKVE   + E
Sbjct:    59 GSQPETESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNTE 118

Query:   116 TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAI 175
             TNFQKASCTLEAGVKIYS+RVD+VH++AYKVLGGITRAG +D  +   A   V+N T+  
Sbjct:   119 TNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDGGDHEDAAGAVENATNQ- 177

Query:   176 HPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEXXXXXXXXXXXXX 235
               K+  E+KISPLSTL+ SF+  NVKKFDVAFAVDPL HQTSAQFDE             
Sbjct:   178 --KKQPEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGV 235

Query:   236 XXXCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREII 295
                C+VLFDS E+PG+  S + +++ S+ ID+SF KE + +MV +M  K EI P+LR II
Sbjct:   236 YGGCQVLFDSQEIPGKLVSSANKHDKSETIDLSFVKECVEQMVLNMRKKDEIVPSLRAII 295

Query:   296 CQFDEDNQR-SQIFSLGENIDLRLD-GLGGCANACHTKE--ETFVGNED-----GLDDSS 346
              QFDE+NQR S  FS G+      D   G  A+     E  E F  + D     G  D +
Sbjct:   296 NQFDEENQRPSDTFSCGQQTTESFDISHGNDASYADDDEGYENFGTSFDYEGQSGDVDEN 355

Query:   347 FGNHKAWGYDQEGGTSVENGPSGADELGINDRFEDVTMFLFQGLGFTSKRNAWAGPDHWK 406
             FG ++A          VE  P+   ++  +DR E+V  +LF  LG +SK+N+WAGPDHWK
Sbjct:   356 FGPNEAEPIYSNFHEEVE--PASLQDMDSDDRLENVDDYLFLSLGISSKQNSWAGPDHWK 413

Query:   407 YQKSKG 412
             Y+K+KG
Sbjct:   414 YRKTKG 419

GO:0005634 "nucleus" evidence=ISM

GO:0000793 "condensed chromosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

MGI|MGI:2444777 Ncaph "non-SMC condensin I complex, subunit H" [Mus musculus (taxid:10090)]

 Score = 293 (108.2 bits), Expect = 6.6e-25, P = 6.6e-25
 Identities = 109/357 (30%), Positives = 167/357 (46%)

Query:    71 QIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGV 129
             QI E    CIKL+SENKI   N + L LID +SEI+K +   DAE TNF+ A+ TL+A  
Sbjct:   101 QITEHYSTCIKLSSENKITTKNAFGLHLIDFMSEILKQK---DAEPTNFKVAAGTLDAST 157

Query:   130 KIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLS 189
             KIY+VRVDAVHA  Y+VLGG+ +      +E+  +G+     T+        ++K S   
Sbjct:   158 KIYAVRVDAVHADVYRVLGGLGKDTPPQGEES-HSGDGSTLETERTKKPAKPKKKQS-CK 215

Query:   190 TLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEXXXXXXXXXXXX-XXXXCRVLFDS-LE 247
             T++ +    NV + D   AVDP+  +T+A FDE                   +LF S ++
Sbjct:   216 TIEQNLSNINVSEADGKCAVDPMFQKTAASFDECSTTGVFLSTLHCQDYRSELLFPSDMQ 275

Query:   248 VPGRCESYSLQN-NCSDMIDISFA-------KELIGKMVNDMHAKTEISPTLREIICQF- 298
                  E   L +    DM D+  +       + L   +      K + S T  E +    
Sbjct:   276 TLSSGEPLELPDLGFVDMTDLEASLQQCVEDRPLCPSLAGFQFTKWD-SETHNESVSALV 334

Query:   299 DEDNQRSQIFSLG-ENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQ 357
             D+  +  Q+F +  E  D   D   G         E FV N++  D S+ G+H+ +   +
Sbjct:   335 DKFKKNDQVFDINAEAEDDEEDVPDG------PLVEDFVDNDEP-DLSAAGDHEEFRSWK 387

Query:   358 EGGTSVENGPSGADELGINDR-FEDVTMFLFQGLG---FTSKRNA--WAGPDHWKYQ 408
             E    V++     + + + DR  + +  FL    G   + S R    WAGPDHW+++
Sbjct:   388 EL-CQVQSNQE--EVISLEDRDIQVMCSFLSMKPGEYSYFSPRTMKMWAGPDHWRFR 441

GO:0000796 "condensin complex" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=ISO

GO:0030261 "chromosome condensation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|C9J470 NCAPH "Condensin complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 101/364 (27%), Positives = 167/364 (45%)

Query:    65 PCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASC 123
             P  +  QI E    CIKL++ENKI   N + L LID +SEI+K +   D E TNF+ A+ 
Sbjct:    89 PKFTNTQITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQK---DTEPTNFKVAAG 145

Query:   124 TLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQ--EDDQETITAGENVDNRTD--AIHPKR 179
             TL+A  KIY+VRVDAVHA  Y+VLGG+ +     E+ +  +  G   +  T   A+ PK+
Sbjct:   146 TLDASTKIYAVRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKK 205

Query:   180 DFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEXXXXXXXXXXXX-XXXX 238
                 +     T++ +    NV + D    +DP+  +T+A FDE                 
Sbjct:   206 KHLHR-----TIEQNINNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDYR 260

Query:   239 CRVLFDS-LEVPGRCESYSLQN-NCSDMIDISFA-------KELIGKMVNDMHAKTEISP 289
               +LF S ++     E   L    C +M D+          +++   +      + + S 
Sbjct:   261 SELLFPSDVQTLSTGEPLELPELGCVEMTDLKAPLQQCAEDRQICPSLAGFQFTQWD-SE 319

Query:   290 TLREIICQF-DEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFG 348
             T  E +    D+  +  Q+F +   +D   D  G   +   +  + F  N++  D ++ G
Sbjct:   320 THNESVSALVDKFKKNDQVFDINAEVD-ESD-CGDFPDG--SLGDDFDANDEP-DHTAVG 374

Query:   349 NHKAWGYDQEGGTSVENGPSGADELGIND-RFEDVTMFLFQG-LGFTSKR--NAWAGPDH 404
             +H+ +   +E    V++       LG  D R     + +  G   + S R  + WAGPDH
Sbjct:   375 DHEEFRSWKEP-CQVQSCQEEMISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDH 433

Query:   405 WKYQ 408
             W+++
Sbjct:   434 WRFR 437

GO:0005737 "cytoplasm" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|E9PHA2 NCAPH "Condensin complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 101/364 (27%), Positives = 167/364 (45%)

Query:    65 PCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASC 123
             P  +  QI E    CIKL++ENKI   N + L LID +SEI+K +   D E TNF+ A+ 
Sbjct:    89 PKFTNTQITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQK---DTEPTNFKVAAG 145

Query:   124 TLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQ--EDDQETITAGENVDNRTD--AIHPKR 179
             TL+A  KIY+VRVDAVHA  Y+VLGG+ +     E+ +  +  G   +  T   A+ PK+
Sbjct:   146 TLDASTKIYAVRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKK 205

Query:   180 DFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEXXXXXXXXXXXX-XXXX 238
                 +     T++ +    NV + D    +DP+  +T+A FDE                 
Sbjct:   206 KHLHR-----TIEQNINNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDYR 260

Query:   239 CRVLFDS-LEVPGRCESYSLQN-NCSDMIDISFA-------KELIGKMVNDMHAKTEISP 289
               +LF S ++     E   L    C +M D+          +++   +      + + S 
Sbjct:   261 SELLFPSDVQTLSTGEPLELPELGCVEMTDLKAPLQQCAEDRQICPSLAGFQFTQWD-SE 319

Query:   290 TLREIICQF-DEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFG 348
             T  E +    D+  +  Q+F +   +D   D  G   +   +  + F  N++  D ++ G
Sbjct:   320 THNESVSALVDKFKKNDQVFDINAEVD-ESD-CGDFPDG--SLGDDFDANDEP-DHTAVG 374

Query:   349 NHKAWGYDQEGGTSVENGPSGADELGIND-RFEDVTMFLFQG-LGFTSKR--NAWAGPDH 404
             +H+ +   +E    V++       LG  D R     + +  G   + S R  + WAGPDH
Sbjct:   375 DHEEFRSWKEP-CQVQSCQEEMISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDH 433

Query:   405 WKYQ 408
             W+++
Sbjct:   434 WRFR 437

GO:0007067 "mitosis" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|Q15003 NCAPH "Condensin complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 101/364 (27%), Positives = 167/364 (45%)

Query:    65 PCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASC 123
             P  +  QI E    CIKL++ENKI   N + L LID +SEI+K +   D E TNF+ A+ 
Sbjct:   100 PKFTNTQITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQK---DTEPTNFKVAAG 156

Query:   124 TLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQ--EDDQETITAGENVDNRTD--AIHPKR 179
             TL+A  KIY+VRVDAVHA  Y+VLGG+ +     E+ +  +  G   +  T   A+ PK+
Sbjct:   157 TLDASTKIYAVRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKK 216

Query:   180 DFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEXXXXXXXXXXXX-XXXX 238
                 +     T++ +    NV + D    +DP+  +T+A FDE                 
Sbjct:   217 KHLHR-----TIEQNINNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDYR 271

Query:   239 CRVLFDS-LEVPGRCESYSLQN-NCSDMIDISFA-------KELIGKMVNDMHAKTEISP 289
               +LF S ++     E   L    C +M D+          +++   +      + + S 
Sbjct:   272 SELLFPSDVQTLSTGEPLELPELGCVEMTDLKAPLQQCAEDRQICPSLAGFQFTQWD-SE 330

Query:   290 TLREIICQF-DEDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFG 348
             T  E +    D+  +  Q+F +   +D   D  G   +   +  + F  N++  D ++ G
Sbjct:   331 THNESVSALVDKFKKNDQVFDINAEVD-ESD-CGDFPDG--SLGDDFDANDEP-DHTAVG 385

Query:   349 NHKAWGYDQEGGTSVENGPSGADELGIND-RFEDVTMFLFQG-LGFTSKR--NAWAGPDH 404
             +H+ +   +E    V++       LG  D R     + +  G   + S R  + WAGPDH
Sbjct:   386 DHEEFRSWKEP-CQVQSCQEEMISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDH 444

Query:   405 WKYQ 408
             W+++
Sbjct:   445 WRFR 448

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IDA

GO:0000796 "condensin complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|F1MH70 NCAPH "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
 Identities = 69/161 (42%), Positives = 91/161 (56%)

Query:    65 PCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASC 123
             P  +  QI E    CIKL++ENKI   N + L LID +SEI+K +   DAE TNF+ A+ 
Sbjct:    89 PKFTNTQITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQK---DAEPTNFKVAAG 145

Query:   124 TLEAGVKIYSVRVDAVHAQAYKVLGGITR-AGQEDDQETITA-GENVDNRTDAIHPKRDF 181
             TL+A  KIY+VRVDAVHA  YKVLGG+ + A   ++ E   A G   +  T    PK   
Sbjct:   146 TLDASTKIYAVRVDAVHADVYKVLGGLGKDAPPPEEAEDHGADGSATETGTAKKAPK--- 202

Query:   182 ERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDE 222
              RK     T++ +    NV   D    VDP+  +T+A FDE
Sbjct:   203 PRKKHSCKTIEQNVNNLNVSSADRKCEVDPMFQKTAASFDE 243

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000796 "condensin complex" evidence=IEA

ASPGD|ASPL0000016922 AN4265 [Emericella nidulans (taxid:162425)]

 Score = 260 (96.6 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
 Identities = 64/177 (36%), Positives = 97/177 (54%)

Query:    72 IVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKI 131
             I+   +  +K+A++NKIN  N+W   LID+  ++  ++  GD+  NFQKASCTL+  VKI
Sbjct:   113 ILANFEEWMKMATDNKINATNSWNFALIDYFHDMSLLKE-GDS-VNFQKASCTLDGCVKI 170

Query:   132 YSVRVDAVHAQAYKVLGGITRAGQEDDQETITAGENV-DNRTDAIH--PKRDFERKISPL 188
             Y+ RVD+V  +  K+L G+  +  +  +E    GE   D+  D      KR   RK +  
Sbjct:   171 YTSRVDSVATETGKLLSGLADSRDKKAREAEAEGEGAEDDEEDGEEGTSKRS-RRKRTHE 229

Query:   189 STLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEXXXXXXXXXXXXXXXXCRVLFDS 245
             +TL  SF +  +KKF++ F+VDPL  + SA FDE                 R++FDS
Sbjct:   230 ATLAPSFSSLQLKKFELEFSVDPLFKKASADFDEGGAKGLLLNHLSIDGHGRIVFDS 286

GO:0006281 "DNA repair" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000796 "condensin complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPCC306.03c cnd2 "condensin complex non-SMC subunit Cnd2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 255 (94.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
 Identities = 65/214 (30%), Positives = 105/214 (49%)

Query:    32 NDQLEREQXXXXXXXXXXXXXXTSTSSSPLPEDPCLSEEQIVELLQNCIKLASENKINQN 91
             N + +RE               +  +SSP        +  ++   +  IKLA++NKIN  
Sbjct:    30 NSRKQRELRRSSALHSITPRRESLNNSSPFNSS---HQVPVLSNFEEWIKLATDNKINST 86

Query:    92 NTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGIT 151
             NTW   LID+  ++  +   G+ + NFQKASCTL+  VKIY+ R+D+V  +  K+L G+ 
Sbjct:    87 NTWNFALIDYFHDMSLLRD-GE-DINFQKASCTLDGCVKIYTSRIDSVATETGKLLSGLA 144

Query:   152 RAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDP 211
                +   Q+T   GE+ +N  + +  K++ +R    + TL   FE+   KKF++  + DP
Sbjct:   145 NDSKVL-QQT-EEGEDAENDDEDLQKKKERKRAQRSVKTLVKDFESIRAKKFELECSFDP 202

Query:   212 LSHQTSAQFDEXXXXXXXXXXXXXXXXCRVLFDS 245
             L  +  A FDE                 R++FDS
Sbjct:   203 LFKKMCADFDEDGAKGLLMNHLCVDQHGRIVFDS 236

GO:0000796 "condensin complex" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006281 "DNA repair" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

ZFIN|ZDB-GENE-070112-652 ncaph "non-SMC condensin I complex, subunit H" [Danio rerio (taxid:7955)]

 Score = 268 (99.4 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
 Identities = 67/172 (38%), Positives = 102/172 (59%)

Query:    57 SSSPLPED-PCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE 115
             SS+  P   P LS  QI E    CIKL++ENKI   N + L LID++++I+K +   D+E
Sbjct:    71 SSAGTPAAVPKLSSAQISEHYSTCIKLSTENKITTKNAFGLHLIDYMADILKEK---DSE 127

Query:   116 TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGI-----TRAGQEDDQETITAGENVDN 170
              NF+ A+ TL+A  KIY+VRVDAVHA AY+VLGG+      +  Q+ D ET  A E   +
Sbjct:   128 LNFKVAAGTLDASTKIYAVRVDAVHADAYRVLGGLGSETKPKESQDGDDET-EAAEG--S 184

Query:   171 RTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDE 222
             + + +  K+   +K  P  T++ +    N+ + ++   VDP+  + +A FDE
Sbjct:   185 QGEQVAAKQT--KKRPPKKTVEQNLSNINLSESEMKCEVDPMFQRMAASFDE 234

GO:0003674 "molecular_function" evidence=ND

GO:0000070 "mitotic sister chromatid segregation" evidence=IGI;IMP

GO:0000796 "condensin complex" evidence=ISS

UNIPROTKB|G4MUD3 MGG_01639 "Condensin complex component cnd2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 267 (99.0 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 101/319 (31%), Positives = 153/319 (47%)

Query:    72 IVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKI 131
             I+   +  +K+A++NKINQ N+W   LID+  ++  ++  GD   NFQKASCTL+  VKI
Sbjct:   128 ILANFEEWMKMATDNKINQANSWNFALIDYFHDMSLLKE-GDG-VNFQKASCTLDGCVKI 185

Query:   132 YSVRVDAVHAQAYKVLGGIT--------RAGQEDDQETITAGENVDNRTDAIHPKRDFER 183
             Y+ RVD+V  +  K+L G+         RA  + D E   A + VD   + I  K+  ++
Sbjct:   186 YTSRVDSVAEETGKLLSGLADSRDSKKKRADGDGDGEDSGAEDEVDEDGNVI--KKPKKK 243

Query:   184 KISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEXXXXXXXXXXXXXXXXCRVLF 243
               S  +TL  SF +  +KKF++ FAVDPL  + SA FDE                 R++F
Sbjct:   244 SRSAEATLAPSFSSIQLKKFELEFAVDPLFKKASADFDEGGAKGLLLNHLMIDTQGRIVF 303

Query:   244 DSLEVPGRCESYSLQNNCSDMIDI--SFAKELIGKMVNDMHAKTEISPTLREIICQFDED 301
             DS +     E+    N+ S+M     S A +    + +D   + E +PT        +E+
Sbjct:   304 DSSD-----EA----NDTSEMPKSRRSEAMDQDQDLDDDDTVQPEAAPTPTP-----EEE 349

Query:   302 NQRSQIFSLGENI--DL-RLDGLGGCANACHTKEETF-VGNEDGLDDSSFGNH-KAWGYD 356
             +    I +LG     DL RLD    C +      +TF +G+  G  D  F    + W  D
Sbjct:   350 DVEIDIGALGARFFSDLSRLDEFDVCPSL-----KTFDLGDPSGTMDIPFLKAAEDWRQD 404

Query:   357 QEGGTSVENGPSGADELGI 375
             QE     E  P   D+ G+
Sbjct:   405 QEK----EKTPGPGDKSGM 419

GO:0003674 "molecular_function" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
pfam05786	719	pfam05786, Cnd2, Condensin complex subunit 2	1e-84
COG5229	662	COG5229, LOC7, Chromosome condensation complex Con	8e-32

>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2

 Score =  272 bits (698), Expect = 1e-84
 Identities = 143/444 (32%), Positives = 198/444 (44%), Gaps = 51/444 (11%)

Query: 6   SPRQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRK---ATSTSSSPLP 62
           +P +R    +     +        SN+D+ ER Q R +R    RR      TS  SS   
Sbjct: 3   TPLRRSPGGSTQRLSSPMTPL--PSNDDEAERRQRRPSR----RRSVLDLQTSADSSTPR 56

Query: 63  E-------DPCLSEEQIVELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE 115
                    P LS  QI+E  + CIKLA++NKIN  N W L LID+  +I+ ++      
Sbjct: 57  ASGGRRAVTPKLSSTQILENFEECIKLATDNKINTKNAWNLALIDYFHDILLLKE--GEL 114

Query: 116 TNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAG--------EN 167
           TNFQKASCTL+A VKIY+ RVD+VH +  K+LGG+  +  ++  ET   G        E 
Sbjct: 115 TNFQKASCTLDASVKIYASRVDSVHTETGKLLGGLADSDNKEAPETGREGDDGEDDDEEG 174

Query: 168 VDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARG 227
            D   D    K   +R+  P STL+ +FE  NVKK D+ FAVDPL  +TSA FDEGGA+G
Sbjct: 175 SDGEEDGAKKKAKKKRQRKPESTLEKNFEALNVKKLDLEFAVDPLFKKTSADFDEGGAKG 234

Query: 228 LLLNNLGVYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEI 287
           LLLN+L +    R++FDS E P    S   +      ID++  K      + D   K  I
Sbjct: 235 LLLNHLSIDSEGRLVFDSSEDPEELSSEDDEFPDDGEIDLTPLKFF---PLLDRLEKRPI 291

Query: 288 SPTLREIICQFDEDNQRSQIFSL-----GENIDLRLDGLGG-CANACHTK-------EET 334
            P+L     Q  + +       L      EN D   D       N            E  
Sbjct: 292 CPSLAGF--QLTDPSGSLDDPFLKAPEDTENEDESDDNADDFDDNDKKGDVGFDINAEVE 349

Query: 335 FVGNEDGLDDSSFGNHKAWGYDQEGGTSVENGPSGADELGINDRFEDVTMFLFQGLGFTS 394
              +ED  D    G+     ++ E    ++          I D  E V   +       S
Sbjct: 350 DDPDEDAEDGGDGGDA--EEFEAEKEPMLKVCRVDRQVTEIIDGDEPVDYCISLSYNELS 407

Query: 395 KR-----NAWAGPDHWKYQKSKGR 413
                    WAGP+HWK++++K  
Sbjct: 408 YFDPRLQKNWAGPEHWKFRRTKRP 431

This family consists of several Barren protein homologues from several eukaryotic organisms. In Drosophila Barren (barr) is required for sister-chromatid segregation in mitosis. barr encodes a novel protein that is present in proliferating cells and has homologues in yeast and human. Mitotic defects in barr embryos become apparent during cycle 16, resulting in a loss of PNS and CNS neurons. Centromeres move apart at the metaphase-anaphase transition and Cyclin B is degraded, but sister chromatids remain connected, resulting in chromatin bridging. Barren protein localises to chromatin throughout mitosis. Colocalisation and biochemical experiments indicate that Barren associates with Topoisomerase II throughout mitosis and alters the activity of Topoisomerase II. It has been suggested that this association is required for proper chromosomal segregation by facilitating the decatenation of chromatids at anaphase. This family forms one of the three non-structural maintenance of chromosomes (SMC) subunits of the mitotic condensation complex along with Cnd1 and Cnd3. Length = 719

>gnl|CDD|227554 COG5229, LOC7, Chromosome condensation complex Condensin, subunit H [Chromatin structure and dynamics / Cell division and chromosome partitioning]

 Score =  127 bits (319), Expect = 8e-32
 Identities = 93/370 (25%), Positives = 146/370 (39%), Gaps = 48/370 (12%)

Query: 80  IKLASENKINQNNTWELKLIDHLSEIIKVETVGDAE-TNFQKASCTLEAGVKIYSVRVDA 138
           IK A++NKIN  NTW   LID+ ++I   + + D E  NFQKASCTL+   KIYS RVD+
Sbjct: 10  IKAATDNKINSKNTWNFALIDYFTDI---DELRDGEGINFQKASCTLDGCAKIYSSRVDS 66

Query: 139 VHAQAYKVLGGITRAGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETF 198
           V  +  K+L G+       + E +  G +++      +   +  +K     T    FE  
Sbjct: 67  VSTETGKLLSGLANDSNGGNGEGL--GGDIEIDDPDRNNTEERRKKQRVGKTTLVKFEKI 124

Query: 199 NVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLE----------- 247
            +KK      +DPL  +    FDEGGA+ LLLN L +    R+ FDS             
Sbjct: 125 TIKKNICELNIDPLFKKRCVDFDEGGAKSLLLNTLNIDNTKRLYFDSSPIKDTENVGQGK 184

Query: 248 VPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFD-------- 299
           +  + E    +++  D + I      I    + ++     +P++ + I            
Sbjct: 185 LQRKEEELIERDSLVDDLMIDSQSLGISSNDSTVNDSVISAPSMEDEILGLGMDFIKVLR 244

Query: 300 ------------EDNQRSQIFSLGENIDLRLDGLGGCANACHTKEETFVGNEDGLDDSSF 347
                       +D + S  F  G    L    +          EE  V N++ + DS  
Sbjct: 245 MSVCRIEGTVIVDDFKMSMDFPAG---LLISPSISEDKEIRDIVEEPAVDNDNEVSDS-- 299

Query: 348 GNHKAWGYDQEGGTSVENGPSGADELGINDRFEDVTMFLFQGL----GFTSKRNAWAGPD 403
            +    G      +      +       N           + +     F+  +N WAGP+
Sbjct: 300 -DGFDMGEHAGLFSGDNFELNEILPPSSNQNPSTTGSIFEKDVYKYFDFSYFKN-WAGPE 357

Query: 404 HWKYQKSKGR 413
           HWK Q  K R
Sbjct: 358 HWKVQAKKKR 367

Length = 662

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
PF05786	725	Cnd2: Condensin complex subunit 2; InterPro: IPR02	100.0
KOG2328	702	consensus Chromosome condensation complex Condensi	100.0
COG5229	662	LOC7 Chromosome condensation complex Condensin, su	100.0
KOG2359	688	consensus Uncharacterized conserved protein [Funct	84.35

>PF05786 Cnd2: Condensin complex subunit 2; InterPro: IPR022816 This entry represents eukaryotic condensin complex subunit 2 proteins

Probab=100.00  E-value=1.8e-81  Score=675.93  Aligned_cols=284  Identities=44%  Similarity=0.682  Sum_probs=221.5

Q ss_pred             cccCcccCCCCccCccCCCCCchHHHHHHHHHHHHHH-HhhhhcccCCCC--------CCCCCCCCCHHHHHHHHHHHHH
Q 040288           11 GTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAA-IRRRKATSTSSS--------PLPEDPCLSEEQIVELLQNCIK   81 (413)
Q Consensus        11 ~~~~~~~~sp~~~~~~~~~~NdDe~ER~~rR~sR~~~-~rr~~~~~~~~~--------~~~~~~~ls~~qi~e~y~~cIK   81 (413)
                      .++++++.||..  +  ++.|||++||++||.+|... +++.....++.+        .+...+.++.+||.++|++|||
T Consensus        10 ~~~~~~~~~~~~--~--~~~ndd~~er~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik   85 (725)
T PF05786_consen   10 SSSKSRLNSPVS--P--LPSNDDEAERRQRRASRRSSVLDRQSSTSSSTPSASNQSSSGSASSPMLNKEQILENFEECIK   85 (725)
T ss_pred             CCCCCCCCCCCC--C--CCCCccHHHHHhhccccchhhhhcccccCCCccccccccccccccCcccChHHHHHHHHHHHH
Confidence            446677778877  5  99999999999996554433 333221111111        2344688999999999999999


Q ss_pred             HHhhcccccccccccchhhHHHHHHhhcccCCCccchhhhccccccceeeeeeehhhHHHHHHHHHhhhhhcCCCCccc-
Q 040288           82 LASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQE-  160 (413)
Q Consensus        82 LateNKIn~KNAW~l~LID~m~dll~~~d~~~~~tNFQkAS~TLDAsvKIYs~RVDSVhtetyKvL~gL~r~~~~~e~~-  160 (413)
                      |+++||||+||||+|+|||||++|+..+++  +.+|||+||||||||||||||||||||++|||||+||++..+....+ 
T Consensus        86 l~~~NKIn~~Naw~~~lID~~~~~~~~~~~--~~~nFq~As~tLd~~~KIy~~RVDsv~~~t~k~l~~l~~~~~~~~~~~  163 (725)
T PF05786_consen   86 LATENKINAKNAWNLALIDYFHDLIDKKDG--DMINFQKASCTLDASVKIYSSRVDSVHTETYKLLSGLARSDQKEAAEE  163 (725)
T ss_pred             HHhhCCcccccccchhHHHHHHHHHhcccc--ccchHHHhhhheeeeeeEEeeeehHHHHHHHHHHHhcccccccccccc
Confidence            999999999999999999999999888754  68999999999999999999999999999999999999643111110 


Q ss_pred             ----cc-cc--CCCCCCCccCCCCCcccccccCCCccccccccccccccccccccCCccchhhhcccccCChhhhhhccc
Q 040288          161 ----TI-TA--GENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNL  233 (413)
Q Consensus       161 ----~~-~~--g~~~~~~~~~~~~KKkkkRk~~~~sTLekn~~~Invkk~D~~f~vDPLF~Ktsa~FDEggA~GLLLnnL  233 (413)
                          .+ +.  +++....+....+|++||++++..+||++||++||+|+||++|.|||||+|++|.||||||+|||||||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~TL~~~~~~i~~k~~d~e~~vDPLFkK~sa~FDEggAkgLLLN~L  243 (725)
T PF05786_consen  164 GDEGEDGEDDDGEGQDDEEDGSKKKKKKKRNRRSESTLEKNFENINVKKFDLEFSVDPLFKKTSADFDEGGAKGLLLNNL  243 (725)
T ss_pred             ccccCCCCCccccccccccccccccccccccCCccchhhcCHHHhCCccccccccCCHHHhhhhcccCCcchHHHHHhhc
Confidence                00 00  111111111122222334457889999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEecCCCCCCCc--ccccccCCCCCccchhHHHHHHHHHHhhhccCCCCCcCHHHHHhhccCCcccc
Q 040288          234 GVYGGCRVLFDSLEVPGRC--ESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQRS  305 (413)
Q Consensus       234 ~v~~~~~llFDS~~~p~~~--~~~~~~~~~~~~idls~lk~~i~~~~~~~~~~~~IcPSL~~f~~~lde~n~~~  305 (413)
                      .|+++|+|||||++.+.+.  .....+.+....||++.|+   ..++..+++...|||||++|.  |++.+...
T Consensus       244 ~id~~~rlvFDs~~~~~~~~~~~~~~~~~~~~~id~~~l~---~~~~~~~~~~~~IcPsl~~f~--~~d~~~~~  312 (725)
T PF05786_consen  244 SIDSGCRLVFDSSDVPEESEEETEEEEEEDEEEIDLSSLK---FFPLLSSLEDLEICPSLSGFR--LDDPNKSK  312 (725)
T ss_pred             ccCCCceEEecCCccccccccccccccCCccccccHHHhh---hcccccccccCccCcchhCcc--ccCCCCCc
Confidence            9999999999999999863  3333345567899999998   344456778999999999999  88777776

Included in this group are several Barren protein homologues from several eukaryotic organisms. In Drosophila Barren (barr) is required for sister-chromatid segregation in mitosis. barr encodes a novel protein that is present in proliferating cells and has homologues in yeast and human. Mitotic defects in barr embryos become apparent during cycle 16, resulting in a loss of PNS and CNS neurons. Centromeres move apart at the metaphase-anaphase transition and Cyclin B is degraded, but sister chromatids remain connected, resulting in chromatin bridging. Barren protein localises to chromatin throughout mitosis. Colocalisation and biochemical experiments indicate that Barren associates with Topoisomerase II throughout mitosis and alters the activity of Topoisomerase II. It has been suggested that this association is required for proper chromosomal segregation by facilitating the decatenation of chromatids at anaphase [].

>KOG2328 consensus Chromosome condensation complex Condensin, subunit H [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.3e-79  Score=638.45  Aligned_cols=376  Identities=36%  Similarity=0.482  Sum_probs=264.3

Q ss_pred             CCCcccccCcccCCCCccCccCCCCCchHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 040288            6 SPRQRGTMSNRLHSPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKATSTSSSPLPEDPCLSEEQIVELLQNCIKLASE   85 (413)
Q Consensus         6 ~p~~~~~~~~~~~sp~~~~~~~~~~NdDe~ER~~rR~sR~~~~rr~~~~~~~~~~~~~~~~ls~~qi~e~y~~cIKLate   85 (413)
                      +|.| +....+++-|..  +++++.||||+||+||||+    -||..+.  +      .+.+...||+++|++|||||++
T Consensus         8 ~~~p-~sa~~~~~~~~~--~~~~~~Ndd~~er~q~r~a----~r~~~~~--~------~s~~~s~~i~e~f~~cIKLate   72 (702)
T KOG2328|consen    8 TPLP-RSAPGSIQEGVS--RMLTPFNDDEAERLQARRA----PRLQQHH--R------SSTLESIQINENFENCIKLATE   72 (702)
T ss_pred             CCCC-ccccccCCCccc--ccccCcCchHHHHHHhhhc----hhhhhcc--C------CCcchhhhHHHHHHHHHHHhhc
Confidence            4444 333345666677  8999999999999999976    2222222  2      2444559999999999999999


Q ss_pred             cccccccccccchhhHHHHHHhhcccCCCccchhhhccccccceeeeeeehhhHHHHHHHHHhhhhhcCCCCcccccccC
Q 040288           86 NKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQETITAG  165 (413)
Q Consensus        86 NKIn~KNAW~l~LID~m~dll~~~d~~~~~tNFQkAS~TLDAsvKIYs~RVDSVhtetyKvL~gL~r~~~~~e~~~~~~g  165 (413)
                      ||||+||||+|+|||||++|++.+++  +.||||||||||||||||||+||||||+||||||+||++.+......++++|
T Consensus        73 NKIntkNtWnl~LID~f~~i~~~kd~--e~iNFqkAs~TLdacvKIYs~RVDSV~tea~rlL~GL~~~gd~~~~~ed~~G  150 (702)
T KOG2328|consen   73 NKINTKNTWNLALIDHFANILKLKDG--ENINFQKASCTLDACVKIYSSRVDSVHTEAMRLLGGLGANGDDIGAAEDDEG  150 (702)
T ss_pred             CccccccchhHHHHHHHHHHHHhhcc--CCcchhhhccccccceeeeeeehhHHHHHHHHHhhccccccccccccccccc
Confidence            99999999999999999999999987  4699999999999999999999999999999999999986533222222223


Q ss_pred             CCCC---CCccCCCCCcccccccCCCccccccccccccccccccccCCccchhhhcccccCChhhhhhccccCCCCcEEE
Q 040288          166 ENVD---NRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVL  242 (413)
Q Consensus       166 ~~~~---~~~~~~~~KKkkkRk~~~~sTLekn~~~Invkk~D~~f~vDPLF~Ktsa~FDEggA~GLLLnnL~v~~~~~ll  242 (413)
                      ...+   .+.++..+|+.++|+.+..+|++++|++|++|++|++|.+||||+|+++.||||||+|||||||.++.+++|+
T Consensus       151 ~~~d~a~~E~~~~~~k~~k~kkq~~~~T~~~~f~~l~~kk~D~~~~iDPlf~K~~adfdE~gAkglLln~L~vd~~~~~l  230 (702)
T KOG2328|consen  151 PDGDQATGENDATNKKAEKPKKQRKLKTTVTKFNELNVKKLDTALLIDPLFKKTCADFDEGGAKGLLLNNLCVDDSERLL  230 (702)
T ss_pred             cccccccccchhhhhcccchhhhcccchhhhhhhhhhhhhhhhhhccChhhhhhcCCccccchhhhhhhcccccCceeEE
Confidence            2222   2222122233245666789999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCC-CCCcccccccCCCCCccchhHHHHHHHHHHhhhccCCCCCcCHHHHH-------hhccCCcccc-cccccCCc
Q 040288          243 FDSLEV-PGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTEISPTLREII-------CQFDEDNQRS-QIFSLGEN  313 (413)
Q Consensus       243 FDS~~~-p~~~~~~~~~~~~~~~idls~lk~~i~~~~~~~~~~~~IcPSL~~f~-------~~lde~n~~~-~~~~~~~~  313 (413)
                      |||+.. ..+-.....+....-.+..+.+......|+..+   ..|||||....       .+++++|+.+ .....+..
T Consensus       231 fdS~~i~~sen~~e~~~vh~l~~~e~s~~~~~~~~~~~d~---~~~~Ps~e~~~~~l~~~~~~~da~n~~s~~~~~~~~~  307 (702)
T KOG2328|consen  231 FDSSNIKDSENKTEETQVHTLLNAEMSLGIAKSLMCVNDM---VKICPSLESNLLPLHTIKIQTDAENPISGTSKVDDVV  307 (702)
T ss_pred             eccccccccccCccccccccccchhhhcccccchhhhHHH---HhhchhhhhcCCcccceeeeecccCCCccchhhhhhh
Confidence            999942 111100000000111222333344444555333   37899988533       6999999999 77777777


Q ss_pred             ccccccCCCCCCCcCCCCcccccCCCCCCCCCcCCCCCCCCCCCCCCccc---------C-------CCCCCCCCCCCcc
Q 040288          314 IDLRLDGLGGCANACHTKEETFVGNEDGLDDSSFGNHKAWGYDQEGGTSV---------E-------NGPSGADELGIND  377 (413)
Q Consensus       314 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-------~~~~~~~~~~~~~  377 (413)
                      -.+++|-+-+.+.+.--            ++..|.....=.||-++...+         +       .+......+.|++
T Consensus       308 ~~~d~d~~~~~~~s~~e------------~~~~~d~~~e~~~d~d~~~dd~~~~d~~E~e~~~~~~~~evn~~~~~~~~~  375 (702)
T KOG2328|consen  308 QKEDFDAGLLNEDSMNE------------DDEFFDIEEEPAPDEDNPPDDVEVFDMNELEELTSPDQMEVNNARRLSMDD  375 (702)
T ss_pred             hhccccccccccccccc------------cchhhhhhccccccCCCCcccccccCchhhccCCCcccccccccccccccc
Confidence            77888733333222211            112233333323333222222         0       0111223334555


Q ss_pred             c----cchhHHHHhhccccccccccccCCCccccccCCCC
Q 040288          378 R----FEDVTMFLFQGLGFTSKRNAWAGPDHWKYQKSKGR  413 (413)
Q Consensus       378 ~----~~~~~~~~~~~~g~~~k~n~wagp~hwk~r~~~~~  413 (413)
                      .    +..|+.++..+++-.++.+.||||+|||||+.||+
T Consensus       376 n~i~~l~~v~~~~~ysyf~~s~~~~WAGPdHWK~r~~kk~  415 (702)
T KOG2328|consen  376 NDISTLRPVDGNLEYSYFSMSQIKNWAGPDHWKFRATKKR  415 (702)
T ss_pred             cchhhcccccccceeeccCHHHhhccCCccceeeecccCC
Confidence            4    48899999999999999999999999999999985

>COG5229 LOC7 Chromosome condensation complex Condensin, subunit H [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=100.00  E-value=2.6e-55  Score=445.44  Aligned_cols=171  Identities=35%  Similarity=0.528  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHhhcccccccccccchhhHHHHHHhhcccCCCccchhhhccccccceeeeeeehhhHHHHHHHHHhhhhh
Q 040288           73 VELLQNCIKLASENKINQNNTWELKLIDHLSEIIKVETVGDAETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITR  152 (413)
Q Consensus        73 ~e~y~~cIKLateNKIn~KNAW~l~LID~m~dll~~~d~~~~~tNFQkAS~TLDAsvKIYs~RVDSVhtetyKvL~gL~r  152 (413)
                      +.+|++|||||++||||++|+|+|+|||||++|-..+++  +.|||||||||||||+|||++|||||.++|+|||+||+-
T Consensus         3 ~~nfeeWiK~AtdNKIns~NtWnfaLIDyF~d~d~lrdg--e~INFQKAScTLDGC~KIYssRvDsVstetgkLLsGlaN   80 (662)
T COG5229           3 NDNFEEWIKAATDNKINSKNTWNFALIDYFTDIDELRDG--EGINFQKASCTLDGCAKIYSSRVDSVSTETGKLLSGLAN   80 (662)
T ss_pred             cccHHHHHHHHhhCccccccchhhHHHHHhhhHHHhccc--CCccceeccccccchhhhhhccchHhhhhHHHHhhcccc
Confidence            468999999999999999999999999999999888876  459999999999999999999999999999999999984


Q ss_pred             cCCCCcccccccCCCCCCCccCCCCCcccccccCCCccccccccccccccccccccCCccchhhhcccccCChhhhhhcc
Q 040288          153 AGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPLSHQTSAQFDEGGARGLLLNN  232 (413)
Q Consensus       153 ~~~~~e~~~~~~g~~~~~~~~~~~~KKkkkRk~~~~sTLekn~~~Invkk~D~~f~vDPLF~Ktsa~FDEggA~GLLLnn  232 (413)
                      ......++.  .|++++..+.....++.++|+.|..+|+.+.|+.|.+|+++.++.+||||+|+++.||||||+|||||+
T Consensus        81 DSn~~n~~~--~G~D~E~DD~D~nnt~err~~qR~~kT~l~~fe~I~~kk~~~el~idplfkk~cvDfDE~GAK~LLlN~  158 (662)
T COG5229          81 DSNGGNGEG--LGGDIEIDDPDRNNTEERRKKQRVGKTTLVKFEKITIKKNICELNIDPLFKKRCVDFDEGGAKSLLLNT  158 (662)
T ss_pred             ccccccccc--cCcccccCchhhhhHHHHHHHHhhhhhhhhhhheeehhhhhhccccchhhHhhccCcccccchhhhhcc
Confidence            333222211  122222111111122224455677899999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEEecCCC
Q 040288          233 LGVYGGCRVLFDSLE  247 (413)
Q Consensus       233 L~v~~~~~llFDS~~  247 (413)
                      |.|+...+|+|||+.
T Consensus       159 L~iDn~~ri~fdss~  173 (662)
T COG5229         159 LNIDNTKRLYFDSSP  173 (662)
T ss_pred             ccccccceEEEecCc
Confidence            999999999999984

>KOG2359 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.35  E-value=0.81  Score=49.82  Aligned_cols=39  Identities=21%  Similarity=0.352  Sum_probs=36.2

Q ss_pred             CccchhhhccccccceeeeeeehhhHHHHHHHHHhhhhh
Q 040288          114 AETNFQKASCTLEAGVKIYSVRVDAVHAQAYKVLGGITR  152 (413)
Q Consensus       114 ~~tNFQkAS~TLDAsvKIYs~RVDSVhtetyKvL~gL~r  152 (413)
                      ...|||+|.-.|.||+-|||-.||-||.-|.++|.=|..
T Consensus        56 ~~~~f~~a~~~~qgs~~vy~~kv~~~y~l~~~~~~~~~~   94 (688)
T KOG2359|consen   56 TTYDFQRACRIIQGSCAVYGRKVDHVYELTISVVDLVEN   94 (688)
T ss_pred             ccccHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHh
Confidence            367999999999999999999999999999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 49/329 (14%), Positives = 93/329 (28%), Gaps = 84/329 (25%)

Query: 19  SPTRQRQFFLGSNNDQLEREQARAARAAAIRRRKATSTSSSPLPEDPCLSEEQIVELLQN 78
           S        L  ++  L  ++ ++         K        LP +              
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLL------KYLDCRPQDLPREVL----TTNPRR-- 329

Query: 79  CIKLASENKINQNNTWE-LK--LIDHLSEIIK--VETVGDAET--NFQKASCTLEAGVKI 131
            + + +E+  +   TW+  K    D L+ II+  +  +  AE    F + S        I
Sbjct: 330 -LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHI 387

Query: 132 YSVRVDAVHAQAYKVLGGITRAGQEDDQETIT--------AGENVDNRTDAIHP-KRDFE 182
                         +L  I     + D   +           +     T +I     + +
Sbjct: 388 -----------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 183 RKISPLSTLDSSF-ETFNV-KKFDV-AFAVDPLS---------HQTSAQFDEGGA--RGL 228
            K+     L  S  + +N+ K FD        L          H  + +  E     R +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 229 LLNNLGVYGGCRVLFDSLEVPGRCESYSLQNNCS---DMIDISFAKELIGKMVNDMHAKT 285
            L+           F  LE   R +S +   + S    +  + F K  I           
Sbjct: 497 FLD-----------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI----------C 535

Query: 286 EISPTLREIICQFDEDNQRSQIFSLGENI 314
           +  P    ++     D     +  + EN+
Sbjct: 536 DNDPKYERLVNAI-LDF----LPKIEENL 559

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 64/416 (15%), Positives = 120/416 (28%), Gaps = 147/416 (35%)

Query: 66  CLSEEQIVELLQN-CIKLASENKINQNNTWELKL-----IDHLSEIIKVET--------- 110
           C S E ++E+LQ    ++        +++  +KL        L  ++K +          
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 111 -VGDAET----NFQKASC-----TLEAGVKIYSVRVDAVHAQAYKVLGGITRAGQEDDQE 160
            V +A+     N     C     T    V       D + A     +        +    
Sbjct: 252 NVQNAKAWNAFNLS---CKILLTTRFKQV------TDFLSAATTTHI------SLDHHSM 296

Query: 161 TITAGEN-------VDNRTDAIHPKRDFERKISPL-------------STLDSSFETFNV 200
           T+T  E        +D R   + P+       +P              +T D +++  N 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDL-PRE--VLTTNPRRLSIIAESIRDGLATWD-NWKHVNC 352

Query: 201 KKFDVAFAVDPLSHQTSAQFDEGGARGLLLNNLGVYGGCRVLFDSLEVPGRCESYSLQNN 260
            K         L+    A++     R +       +    V   S  +P    +  L   
Sbjct: 353 DKLTTIIESS-LNVLEPAEY-----RKM-------FDRLSVFPPSAHIP----TILLSLI 395

Query: 261 CSDMIDISFAKELIGKMVNDMHAKTEISPTLREIICQFDEDNQRSQIFSLGENI-DLRLD 319
             D+I     K  +  +VN +H  + +           ++  + S I      I  + L+
Sbjct: 396 WFDVI-----KSDVMVVVNKLHKYSLV-----------EKQPKESTIS-----IPSIYLE 434

Query: 320 GLGGCAN--ACHTK-------EETFVGNEDGLD--DSSFGNHKAWGYDQEGGTSVENGPS 368
                 N  A H          +TF  ++      D  F +H   G+             
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGH------------- 479

Query: 369 GADELGINDRFEDVTMF--LFQGLGFTSKR-----NAWAGP--------DHWKYQK 409
               L   +  E +T+F  +F    F  ++      AW               Y+ 
Sbjct: 480 ---HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 48/287 (16%), Positives = 73/287 (25%), Gaps = 84/287 (29%)

Query: 176 HPKRDFE--------RKISPLSTLDSSFETFNVKKFDVAFAVD-PLSHQTSAQFDEGGAR 226
           H   DFE        + I  LS  + +F    V  FD     D P S  +  + D     
Sbjct: 4   HHHMDFETGEHQYQYKDI--LSVFEDAF----VDNFDCKDVQDMPKSILSKEEIDH---- 53

Query: 227 GLLLNNLGVYGGCRVLFDSLEVPGRCESYSLQNNCSDMIDISFAKELIGKMVNDMHAKTE 286
             ++ +     G   LF +L      E           I+  F    I          T 
Sbjct: 54  --IIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 287 ISPTLREIICQFDEDNQ----------------RSQIFSLGENIDLRLDGLGGC------ 324
           +    R+ +     DNQ                R  +  L    ++ +DG+ G       
Sbjct: 111 MYIEQRDRLYN---DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 325 ANACHTKEETFVGNEDGLDDSSFGNHKAW---GYDQEGGTSVE-----------NGPSGA 370
            + C + +                    W          T +E           N  S +
Sbjct: 168 LDVCLSYKV----------QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 371 DEL-GINDRFEDVTMFLFQGLGFTSK---------RNAWAGPDHWKY 407
           D    I  R   +   L + L   SK          N       W  
Sbjct: 218 DHSSNIKLRIHSIQAEL-RRL-LKSKPYENCLLVLLNVQN-AKAWNA 261

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 39/243 (16%), Positives = 70/243 (28%), Gaps = 66/243 (27%)

Query: 100 DHLSEIIKVETVGD--AETNFQKAS-----CTLEAGVKIYSVRVDAVHAQAYKVLGGITR 152
           D    I+  E +       +    +       L    ++    V+ V    YK L  ++ 
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL--MSP 97

Query: 153 AGQEDDQETITAGENVDNRTDAIHPKRDFERKISPLSTLDSSFETFNVKKFDVAFAVDPL 212
              E  Q ++                R +  +   L   +  F  +NV +         L
Sbjct: 98  IKTEQRQPSM--------------MTRMYIEQRDRLYNDNQVFAKYNVSRLQ---PYLKL 140

Query: 213 SHQTSAQFDEGGARGLLLN-----NLGVYG--GC--RVLFDSLEVPGRCESYSLQNNCSD 263
                        R  LL      N+ + G  G     +  +L+V   C SY +Q     
Sbjct: 141 -------------RQALLELRPAKNVLIDGVLGSGKTWV--ALDV---CLSYKVQCKMDF 182

Query: 264 MID-ISFAK----ELIGKMVNDMHAKTEISPTLREIICQFDEDNQRSQIFSLGENIDLRL 318
            I  ++       E + +M+  +  +  I P            +  S I     +I   L
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTS------RSDHSSNIKLRIHSIQAEL 234

Query: 319 DGL 321
             L
Sbjct: 235 RRL 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00