Citrus Sinensis ID: 040297
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.847 | 0.523 | 0.298 | 2e-65 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.846 | 0.523 | 0.306 | 1e-63 | |
| Q9SHI3 | 729 | Receptor-like protein 2 O | no | no | 0.725 | 0.769 | 0.315 | 3e-60 | |
| Q9C7S5 | 1095 | Tyrosine-sulfated glycope | no | no | 0.694 | 0.490 | 0.317 | 2e-58 | |
| Q9ZPS9 | 1143 | Serine/threonine-protein | no | no | 0.716 | 0.484 | 0.290 | 1e-56 | |
| Q9LYN8 | 1192 | Leucine-rich repeat recep | no | no | 0.847 | 0.549 | 0.302 | 1e-56 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.830 | 0.547 | 0.294 | 4e-55 | |
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.868 | 0.792 | 0.283 | 4e-55 | |
| Q9ZWC8 | 1166 | Serine/threonine-protein | no | no | 0.690 | 0.457 | 0.306 | 4e-55 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.752 | 0.510 | 0.304 | 6e-53 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 223/748 (29%), Positives = 345/748 (46%), Gaps = 93/748 (12%)
Query: 11 IGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYL 70
+GSL +LK+L L GT+ + N NL+ L L L + S L+ L
Sbjct: 140 LGSLVNLKSLKLGDNELNGTIP-ETFGNLVNLQMLALASCRL-TGLIPSRFGRLVQLQTL 197
Query: 71 SMQDSVFKGALHGQ-----------------------DFRKFKNLEHLDMGWVQLILSNN 107
+QD+ +G + + + + KNL+ L++G N+
Sbjct: 198 ILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLG------DNS 251
Query: 108 HFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFL 167
+IP L L ++ L ++ +T L ++ LS G +
Sbjct: 252 FSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKR---LTELANLQTLDLSSNNLTGVIHEEF 308
Query: 168 YHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227
+ + L+ L+ LSG+ P + NNT+L+ L L+ L G I + Q L +LD+
Sbjct: 309 WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDL 368
Query: 228 SKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPE 287
S N G IP + L L +L L+ N+ G++ SS +++ L+ + +N L G++P+
Sbjct: 369 SNNTLTGQIPDSL-FQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPK 427
Query: 288 RMATGCFL--LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLA 345
+ FL LEI+ L N G + + N T L + GN +GEI S+ + L
Sbjct: 428 EIG---FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLT 484
Query: 346 GLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGT 405
L+L +N L G IP LGN + I +++N L G IP F L L + + NN++ G
Sbjct: 485 RLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGN 544
Query: 406 LP-SCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLS 464
LP S + + +++ S NK G + + S YL + D++ N F G IP + L
Sbjct: 545 LPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYL-SFDVTENGFEGDIPLELGKSTNLD 603
Query: 465 SLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPA----C--LVYTSLGEDYHEEG 518
L LG N G IP ++ E+ L+D+S N+LSG IP C L + L +Y
Sbjct: 604 RLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGV 663
Query: 519 PPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN-MSYYYQGRILTS--------- 568
PT W + + G L S +G T F+ N ++ + G L
Sbjct: 664 IPT--WLGKLPLLGE--LKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNL 719
Query: 569 ------------MSG--------------IDLSCNKLTGEIPTQIGYLTRIH-ALNLSHN 601
+SG + LS N LTGEIP +IG L + AL+LS+N
Sbjct: 720 QALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYN 779
Query: 602 NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQ 661
N TG IP+T S L ++ESLDLS+N L G++P Q+ + +L ++YNNL GK+ Q
Sbjct: 780 NFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK---KQ 836
Query: 662 FSTFEEDSYEGNPFLCGWPLSKSCDDNG 689
FS ++ D++ GN LCG PLS C+ G
Sbjct: 837 FSRWQADAFVGNAGLCGSPLSH-CNRAG 863
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Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 220/718 (30%), Positives = 352/718 (49%), Gaps = 64/718 (8%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
+++G+L +L+ L L+ TG + +Q L ++ LIL + L + + + + + L
Sbjct: 161 ETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQDNYLE-GPIPAELGNCSDLT 218
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFF-QIPISLEPLFNLSKLKT 127
+ +++ G + + + +NLE L+ L+NN +IP L + L L
Sbjct: 219 VFTAAENMLNGTIPAE-LGRLENLEILN-------LANNSLTGEIPSQLGEMSQLQYLSL 270
Query: 128 FDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNF 187
++ S+ L ++ LS G P+ ++ L + L++ +LSG+
Sbjct: 271 MANQLQGLIPK---SLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSL 327
Query: 188 PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIP------VEI- 240
P + NNTNLE L+L+ L G + + Q L LD+S N G IP VE+
Sbjct: 328 PKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELT 387
Query: 241 ----------GTYLPGLMDLN------LSRNAFNGSIPSSFADMKMLERLDISYNQLTGE 284
GT P + +L L N G +P + ++ LE L + N+ +GE
Sbjct: 388 DLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGE 447
Query: 285 IPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLL 344
IP+ + C L+++ + N+ +G I L L L L N G + SL NC L
Sbjct: 448 IPQEIGN-CTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQL 506
Query: 345 AGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFG 404
L L+DN LSG IP G L LE + + NN+L+G +P L LT ++LS+N + G
Sbjct: 507 NILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNG 566
Query: 405 TL-PSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQL 463
T+ P C S +++ ++ N E ++ + +S L L L N+ G IP + + +L
Sbjct: 567 TIHPLCGSSSYL-SFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIREL 625
Query: 464 SSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACL-VYTSLGE-----DYHEE 517
S L + +N + G IP+QL K++ IDL++N LSG IP L + LGE + E
Sbjct: 626 SLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVE 685
Query: 518 GPPTSIW-C--------DRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI--L 566
PT ++ C D S+ GS +P + G +G + S + L
Sbjct: 686 SLPTELFNCTKLLVLSLDGNSLNGS--IPQEIG-NLGALNVLNLDKNQFSGSLPQAMGKL 742
Query: 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
+ + + LS N LTGEIP +IG L + AL+LS+NN TG IP+T L ++E+LDLS+N
Sbjct: 743 SKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHN 802
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSK 683
L G++P + + +L V++NNL GK+ QFS + DS+ GN LCG PLS+
Sbjct: 803 QLTGEVPGSVGDMKSLGYLNVSFNNLGGKLK---KQFSRWPADSFLGNTGLCGSPLSR 857
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 208/659 (31%), Positives = 294/659 (44%), Gaps = 98/659 (14%)
Query: 148 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNS 207
+T ISL GT + + H L DLS+ LSG P L L L+ NS
Sbjct: 91 HVTVISLPSRGLSGTLASSVQNIHRLSRLDLSYNRLSGPLPPGFFSTLDQLMILNLSYNS 150
Query: 208 LFG------SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPG---LMDLNLSRNAFN 258
G +F + + + LD+S N +G I + YL G L+ N+S N+F
Sbjct: 151 FNGELPLEQAFGNESNRFFSIQTLDLSSNLLEGEI-LRSSVYLQGTINLISFNVSNNSFT 209
Query: 259 GSIPSSFA-DMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNL 317
G IPS L +LD SYN +G I + + C L +L NNL G I S+ +NL
Sbjct: 210 GPIPSFMCRSSPQLSKLDFSYNDFSGHISQELGR-CLRLTVLQAGFNNLSGVIPSEIYNL 268
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
+ L +L L N TG+I ++++ R L L L NHL G IP +GNLS+L +++ NN
Sbjct: 269 SELEQLFLPANQLTGKIDNNITRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINN 328
Query: 378 LEGPIP-------------------------IEFCQLDYLTILDLSNNAIFGTLP-SCFS 411
+ G +P +EF QL L +LDL NN+ G LP FS
Sbjct: 329 INGTVPLSLANCTKLVKLNLRVNQLGGGLTELEFSQLQSLKVLDLGNNSFTGALPDKIFS 388
Query: 412 PAFIEQVHLSKNKIEGQLE--------------------------SIIHDSPYLVTLDLS 445
+ + + NK+ G++ SI+ L TL L+
Sbjct: 389 CKSLTAIRFAGNKLTGEISPQVLELESLSFMGLSDNKLTNITGALSILQGCRKLSTLILA 448
Query: 446 YNRFHGSIPNWINIL-----PQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY 500
N + ++P+ + L P+L +G + GEIP L L +V ++DLS N G
Sbjct: 449 KNFYDETVPSKEDFLSPDGFPKLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGS 508
Query: 501 IPAC------LVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTT 554
IP L Y L ++ P ++ RA L +Q E F
Sbjct: 509 IPGWLGTLPDLFYLDLSDNLLTGELPKELFQLRA-------LMSQKITENNYLELPIFLN 561
Query: 555 KNMSYYYQ--GRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFS 612
N Q ++ + I + N LTG IP ++G L +H L L NNL+G+IP S
Sbjct: 562 PNNVTTNQQYNKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELS 621
Query: 613 NLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEG 672
NL +E LDLS N L G IP LT LN L+ F VA N+L G IP QF TF + ++EG
Sbjct: 622 NLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSE-GQFDTFPKANFEG 680
Query: 673 NPFLCGWPLSKSCDDNGLTTVTTEADTKNEEGDSLIDMDSFLITFTVSYGIVILGIIGV 731
NP LCG L SC T+ +E D L +FL+ + Y + + I+ V
Sbjct: 681 NPLLCGGVLLTSCK-----------PTRAKENDEL--NRTFLMGIAIGYFLSFVSILVV 726
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Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 196/617 (31%), Positives = 283/617 (45%), Gaps = 80/617 (12%)
Query: 144 TPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLL 203
+P+ ++TSI LS G P + L DLSH LSG P + L L L
Sbjct: 89 SPENRVTSIILSSRGLSGNLPSSVLDLQRLSRLDLSHNRLSGPLPPGFLSALDQLLVLDL 148
Query: 204 ANNSLFG------SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDL---NLSR 254
+ NS G SF + + +D+S N +G I + +L G +L N+S
Sbjct: 149 SYNSFKGELPLQQSFGNGSNGIFPIQTVDLSSNLLEGEI-LSSSVFLQGAFNLTSFNVSN 207
Query: 255 NAFNGSIPSSFADMK-MLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSK 313
N+F GSIPS L +LD SYN +G++ + ++ C L +L NNL G I +
Sbjct: 208 NSFTGSIPSFMCTASPQLTKLDFSYNDFSGDLSQELSR-CSRLSVLRAGFNNLSGEIPKE 266
Query: 314 KFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
+NL L +L L N +G+I + ++ L L L NH+ G IP+ +G LS L +++
Sbjct: 267 IYNLPELEQLFLPVNRLSGKIDNGITRLTKLTLLELYSNHIEGEIPKDIGKLSKLSSLQL 326
Query: 374 SNNNLEGPIP-------------------------IEFCQLDYLTILDLSNNAIFGTLPS 408
NNL G IP I+F + L+ILDL NN+ G PS
Sbjct: 327 HVNNLMGSIPVSLANCTKLVKLNLRVNQLGGTLSAIDFSRFQSLSILDLGNNSFTGEFPS 386
Query: 409 -CFSPAFIEQVHLSKNKIEGQLE--------------------------SIIHDSPYLVT 441
+S + + + NK+ GQ+ SI+ L T
Sbjct: 387 TVYSCKMMTAMRFAGNKLTGQISPQVLELESLSFFTFSDNKMTNLTGALSILQGCKKLST 446
Query: 442 LDLSYNRFHGSIPNWINIL-----PQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNN 496
L ++ N + ++P+ + L P L +G + GEIP L +L+ V ++DLS N
Sbjct: 447 LIMAKNFYDETVPSNKDFLRSDGFPSLQIFGIGACRLTGEIPAWLIKLQRVEVMDLSMNR 506
Query: 497 LSGYIPACL------VYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETV 550
G IP L Y L +++ P ++ RA + T+ E V
Sbjct: 507 FVGTIPGWLGTLPDLFYLDLSDNFLTGELPKELFQLRALMSQKAYDATERN---YLELPV 563
Query: 551 QFTTKNMSYYYQGRILTSMS-GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT 609
N++ Q L+S+ I + N LTG IP ++G L +H L L NN +G+IP
Sbjct: 564 FVNPNNVTTNQQYNQLSSLPPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPD 623
Query: 610 TFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDS 669
SNL +E LDLS N L G+IP LT L+ L+ F VA N LSG IP QF TF + +
Sbjct: 624 ELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTG-TQFDTFPKAN 682
Query: 670 YEGNPFLCGWPLSKSCD 686
+EGNP LCG L SCD
Sbjct: 683 FEGNPLLCGGVLLTSCD 699
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Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 195/672 (29%), Positives = 296/672 (44%), Gaps = 118/672 (17%)
Query: 153 SLSGYIDGGTFPKFLYHQH-DLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFG- 210
S SG I GT P+ + ++ +L + LS+ N +G PN L ++ L+TL L+ N++ G
Sbjct: 135 SSSGLI--GTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGP 192
Query: 211 --SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 268
+P+ S + LD S N G+I + L LNLS N F+G IP SF ++
Sbjct: 193 ISGLTIPLSSCVSMTYLDFSGNSISGYISDSL-INCTNLKSLNLSYNNFDGQIPKSFGEL 251
Query: 269 KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 328
K+L+ LD+S+N+LTG IP + C +L L+L N
Sbjct: 252 KLLQSLDLSHNRLTGWIPPEIGDTC------------------------RSLQNLRLSYN 287
Query: 329 NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRW-LGNLSALEDIRMSNNNLEGPIPIEFC 387
NFTG I +SLS+C L L LS+N++SG P L + +L+ + +SNN + G P
Sbjct: 288 NFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSIS 347
Query: 388 QLDYLTILDLSNNAIFGTLPS--CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLS 445
L I D S+N G +P C A +E++ L N + G++ I L T+DLS
Sbjct: 348 ACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLS 407
Query: 446 ------------------------YNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481
YN G IP I L L L+L NN + GEIP +
Sbjct: 408 LNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEF 467
Query: 482 CELKEVRLIDLSHNNLSGYIP------ACLVYTSLGED-YHEEGPP------TSIWCDRA 528
+ + + N L+G +P + L LG + + E PP T +W D
Sbjct: 468 FNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLN 527
Query: 529 SVYGSPCLPTQSGPPMGKEET-------------------------VQFT---------- 553
+ + + +P + G G + V+F+
Sbjct: 528 TNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQI 587
Query: 554 ----TKNMSYYYQGRILT------SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL 603
+ + + Y G IL+ ++ +DLS N+L G+IP +IG + + L LSHN L
Sbjct: 588 PSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQL 647
Query: 604 TGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFS 663
+G IP T LK + D S N L G+IP + L+ L ++ N L+G IP R Q S
Sbjct: 648 SGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQR-GQLS 706
Query: 664 TFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNEEGDSLID-MDSFLITFTVSYG 722
T Y NP LCG PL + + N TE + + G +S ++ +S
Sbjct: 707 TLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGVLISAA 766
Query: 723 IVILGIIGVLYV 734
V + I+ + V
Sbjct: 767 SVCILIVWAIAV 778
|
Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 233/771 (30%), Positives = 347/771 (45%), Gaps = 116/771 (15%)
Query: 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLH--VSQLLSSIAS 63
++ + I SL +L+ L L+ F+G + E+ N +L+ L L + L + +LLS +
Sbjct: 80 QIPKEISSLKNLRELCLAGNQFSGKIP-PEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQ 138
Query: 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFF-QIPISLEPLFNL 122
L YL + D+ F G+L F L LD+ SNN +IP + L NL
Sbjct: 139 ---LLYLDLSDNHFSGSLPPSFFISLPALSSLDV-------SNNSLSGEIPPEIGKLSNL 188
Query: 123 SK----LKTFDGEI------------WAETESHYNSVTPK-----FQLTSISLSGYIDGG 161
S L +F G+I +A +N PK L + LS
Sbjct: 189 SNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKC 248
Query: 162 TFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSF-----RMPI 216
+ PK H+L +L L G P L N +L++L+L+ NSL G +P+
Sbjct: 249 SIPKSFGELHNLSILNLVSAELIGLIPPEL-GNCKSLKSLMLSFNSLSGPLPLELSEIPL 307
Query: 217 HSYQ---------------KLAILD---VSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFN 258
++ K +LD ++ N F G IP EI P L L+L+ N +
Sbjct: 308 LTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEI-EDCPMLKHLSLASNLLS 366
Query: 259 GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLT 318
GSIP LE +D+S N L+G I E + GC L L L+NN + G I + L
Sbjct: 367 GSIPRELCGSGSLEAIDLSGNLLSGTI-EEVFDGCSSLGELLLTNNQINGSIPEDLWKLP 425
Query: 319 NLMRLQLDGNNFTGEISDSL------------------------SNCRLLAGLYLSDNHL 354
LM L LD NNFTGEI SL N L L LSDN L
Sbjct: 426 -LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQL 484
Query: 355 SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP-A 413
+G IPR +G L++L + ++ N +G IP+E LT LDL +N + G +P + A
Sbjct: 485 TGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALA 544
Query: 414 FIEQVHLSKNKIEGQLESI---------IHDSPYLV---TLDLSYNRFHGSIPNWINILP 461
++ + LS N + G + S + D +L DLSYNR G IP +
Sbjct: 545 QLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECL 604
Query: 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPT 521
L + L NN++ GEIP L L + ++DLS N L+G IP +G +G
Sbjct: 605 VLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIP-----KEMGNSLKLQG--- 656
Query: 522 SIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI--LTSMSGIDLSCNKL 579
+ A+ + +P G +G + T + + L ++ +DLS N L
Sbjct: 657 ---LNLANNQLNGHIPESFG-LLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNL 712
Query: 580 TGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLN 639
+GE+ +++ + ++ L + N TG IP+ NL Q+E LD+S NLL G+IP+++ L
Sbjct: 713 SGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLP 772
Query: 640 TLAVFKVAYNNLSGKIP-DRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNG 689
L +A NNL G++P D V Q + + GN LCG + C G
Sbjct: 773 NLEFLNLAKNNLRGEVPSDGVCQDPS--KALLSGNKELCGRVVGSDCKIEG 821
|
Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 212/721 (29%), Positives = 330/721 (45%), Gaps = 79/721 (10%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKY 69
+I +L L+ L L+ +FTG + E+ T L +LIL + + S I ++ Y
Sbjct: 91 AIANLTYLQVLDLTSNSFTGKIP-AEIGKLTELNQLIL-YLNYFSGSIPSGIWELKNIFY 148
Query: 70 LSMQDSVFKG------------ALHGQDFRKFK--------NLEHLDMGWVQLILSNNHF 109
L +++++ G L G D+ +L HL M + + NH
Sbjct: 149 LDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQM----FVAAGNHL 204
Query: 110 F-QIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLY 168
IP+S+ L NL+ L ++ + + ++ L S+ L+ + G P +
Sbjct: 205 TGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNL---LNLQSLVLTENLLEGDIPAEIG 261
Query: 169 HQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVS 228
+ L +L L+G P L N L+ L + N L S + +L L +S
Sbjct: 262 NCSSLVQLELYDNQLTGKIPAEL-GNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLS 320
Query: 229 KNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIP-- 286
+N G I EIG +L L L L N F G P S +++ L L + +N ++GE+P
Sbjct: 321 ENHLVGPISEEIG-FLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPAD 379
Query: 287 -------------ERMATG--------CFLLEILALSNNNLQGHIFSKKFNLTNLMRLQL 325
+ + TG C L++L LS+N + G I + F NL + +
Sbjct: 380 LGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISI 438
Query: 326 DGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIE 385
N+FTGEI D + NC L L ++DN+L+G + +G L L +++S N+L GPIP E
Sbjct: 439 GRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPRE 498
Query: 386 FCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDL 444
L L IL L +N G +P S ++ + + N +EG + + D L LDL
Sbjct: 499 IGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDL 558
Query: 445 SYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPAC 504
S N+F G IP + L L+ L L N G IP L L + D+S N L+G IP
Sbjct: 559 SNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGE 618
Query: 505 LVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGR 564
L+ SL ++ + ++ + +P + +GK E VQ + + + G
Sbjct: 619 LL-ASLKN--------MQLYLNFSNNLLTGTIPKE----LGKLEMVQEIDLS-NNLFSGS 664
Query: 565 ILTSMSG------IDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQI 617
I S+ +D S N L+G IP ++ + I +LNLS N+ +G IP +F N+ +
Sbjct: 665 IPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHL 724
Query: 618 ESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677
SLDLS N L G+IP L L+TL K+A NNL G +P+ F GN LC
Sbjct: 725 VSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPES-GVFKNINASDLMGNTDLC 783
Query: 678 G 678
G
Sbjct: 784 G 784
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 218/768 (28%), Positives = 336/768 (43%), Gaps = 97/768 (12%)
Query: 32 VNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKN 91
N L L L L +L+ ++ SS+ + + L +++ + F G + N
Sbjct: 102 TNSSLFKLQYLRHLDLTNCNLY-GEIPSSLGNLSHLTLVNLYFNKFVGEIPAS----IGN 156
Query: 92 LEHLDMGWVQLILSNNHFF-QIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLT 150
L L LIL+NN +IP SL L L L+ F + + +S+ QL
Sbjct: 157 LNQLR----HLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIP---DSIGDLKQLR 209
Query: 151 SISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFG 210
++SL+ G P L + +L + L+H L G P + N L + NNSL G
Sbjct: 210 NLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFENNSLSG 268
Query: 211 SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 270
+ + + KL+I +S N F P ++ + L ++S N+F+G P S +
Sbjct: 269 NIPISFANLTKLSIFVLSSNNFTSTFPFDMSIF-HNLEYFDVSYNSFSGPFPKSLLLIPS 327
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330
LE + + NQ TG I + L+ L L N L G I L NL L + NNF
Sbjct: 328 LESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNF 387
Query: 331 TGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSAL--------------------ED 370
TG I ++S L L LS N+L G +P L L+ + E+
Sbjct: 388 TGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEE 447
Query: 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS--PAFIEQVHLSKNKIEGQ 428
+ +++N+ +GPIP C+L L LDLSNN G++PSC I++++L N G
Sbjct: 448 LDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGT 507
Query: 429 LESIIHDSPYLVTLDLSYNRFHGSIP------------------------NWINILPQLS 464
L I + LV+LD+S+N+ G P +W+ LP L
Sbjct: 508 LPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLH 567
Query: 465 SLLLGNNYIEGEIPVQLCEL--KEVRLIDLSHNNLSGYIPACLV-----YTSLGEDYHEE 517
L L +N G + + + + +R+ID+SHNN SG +P T+L E+ +
Sbjct: 568 VLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQY 627
Query: 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCN 577
T W S Y ++ K + ++ RI ID S N
Sbjct: 628 M--TEFWRYADSYY----------------HEMEMVNKGVDMSFE-RIRRDFRAIDFSGN 668
Query: 578 KLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637
K+ G IP +GYL + LNLS N T IP +NL ++E+LD+S N L G+IP L
Sbjct: 669 KINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAA 728
Query: 638 LNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEA 697
L+ L+ ++N L G +P R QF + S+ NP L G L C D G T++
Sbjct: 729 LSFLSYMNFSHNLLQGPVP-RGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQL 785
Query: 698 DTKNEEGDSLIDMDSFLITFTVSYGIVILG--IIGVLYVNPYWRRRWF 743
E + +M ++ + ++YG +L +IG Y + WF
Sbjct: 786 PEDLSEAEE--NMFNW-VAAAIAYGPGVLCGLVIGHFYTS--HNHEWF 828
|
Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 189/616 (30%), Positives = 278/616 (45%), Gaps = 82/616 (13%)
Query: 149 LTSISLSGYIDGGTFPKFLYHQ--HDLKNADLSHLNLSGNFPNW------------LVEN 194
LT++ LS I P+ LK DL+H NLSG+F + L +N
Sbjct: 177 LTTVDLSYNILSDKIPESFISDFPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQN 236
Query: 195 NTN-------------LETLLLANNSLFGSFRMP----IHSYQKLAILDVSKNFFQGHIP 237
N + LETL ++ N+L G ++P S+Q L L ++ N G IP
Sbjct: 237 NLSGDKFPITLPNCKFLETLNISRNNLAG--KIPNGEYWGSFQNLKQLSLAHNRLSGEIP 294
Query: 238 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLE 297
E+ L+ L+LS N F+G +PS F L+ L++ N L+G+ + + +
Sbjct: 295 PELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGIT 354
Query: 298 ILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISD---SLSNCRLLAGLYLSDNHL 354
L ++ NN+ G + N +NL L L N FTG + SL + +L + +++N+L
Sbjct: 355 YLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYL 414
Query: 355 SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS--CFSP 412
SG +P LG +L+ I +S N L GPIP E L L+ L + N + GT+P C
Sbjct: 415 SGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKG 474
Query: 413 AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNY 472
+E + L+ N + G + I ++ + LS NR G IP+ I L +L+ L LGNN
Sbjct: 475 GNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNS 534
Query: 473 IEGEIPVQLCELKEVRLIDLSHNNLSGYIPA-------------------CLVYTSLGED 513
+ G +P QL K + +DL+ NNL+G +P V G D
Sbjct: 535 LSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTD 594
Query: 514 YHEEGPPTSIWCDRAS-------VYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRIL 566
G RA V+ P SG M F+ Y+
Sbjct: 595 CRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTM-----YTFSANGSMIYF----- 644
Query: 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 626
D+S N ++G IP G + + LNL HN +TGTIP +F LK I LDLS+N
Sbjct: 645 ------DISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNN 698
Query: 627 LHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCD 686
L G +P L L+ L+ V+ NNL+G IP Q +TF Y N LCG PL + C
Sbjct: 699 LQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFG-GQLTTFPVSRYANNSGLCGVPL-RPCG 756
Query: 687 DNGLTTVTTEADTKNE 702
+T+ K +
Sbjct: 757 SAPRRPITSRIHAKKQ 772
|
Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 192/630 (30%), Positives = 303/630 (48%), Gaps = 48/630 (7%)
Query: 61 IASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLF 120
+ +F SL+ L++ + G L + L+ LD+ SN IP SL L
Sbjct: 101 LPAFRSLQKLTISGANLTGTLP-ESLGDCLGLKVLDLS------SNGLVGDIPWSLSKLR 153
Query: 121 NLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLS- 179
NL L ++ + + + +L S+ L + G+ P L L+ +
Sbjct: 154 NLETLILNSNQLTGKIPPDISKCS---KLKSLILFDNLLTGSIPTELGKLSGLEVIRIGG 210
Query: 180 HLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239
+ +SG P+ + + +NL L LA S+ G+ + +KL L + G IP +
Sbjct: 211 NKEISGQIPSE-IGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSD 269
Query: 240 IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEIL 299
+G L+DL L N+ +GSIP + LE+L + N L G IPE + C L+++
Sbjct: 270 LGN-CSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGN-CSNLKMI 327
Query: 300 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP 359
LS N L G I S L+ L + N F+G I ++SNC L L L N +SG IP
Sbjct: 328 DLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIP 387
Query: 360 RWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS-CFSPAFIEQV 418
LG L+ L +N LEG IP L LDLS N++ GT+PS F + ++
Sbjct: 388 SELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKL 447
Query: 419 HLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478
L N + G + I + LV L L +NR G IP+ I L +++ L +N + G++P
Sbjct: 448 LLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVP 507
Query: 479 VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSI----WCDRASVYGSP 534
++ E+++IDLS+N+L G +P P +S+ D ++ S
Sbjct: 508 DEIGSCSELQMIDLSNNSLEGSLP---------------NPVSSLSGLQVLDVSANQFSG 552
Query: 535 CLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSM---SGI---DLSCNKLTGEIPTQIG 588
+P G + + + +KN+ + G I TS+ SG+ DL N+L+GEIP+++G
Sbjct: 553 KIPASLGRLVSLNKLI--LSKNL---FSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELG 607
Query: 589 YLTRIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647
+ + ALNLS N LTG IP+ ++L ++ LDLS+N+L G + + L + L ++
Sbjct: 608 DIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDL-APLANIENLVSLNIS 666
Query: 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677
YN+ SG +PD F EGN LC
Sbjct: 667 YNSFSGYLPDN-KLFRQLSPQDLEGNKKLC 695
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | ||||||
| 255581263 | 912 | serine-threonine protein kinase, plant-t | 0.923 | 0.782 | 0.497 | 0.0 | |
| 224142481 | 781 | predicted protein [Populus trichocarpa] | 0.904 | 0.895 | 0.459 | 1e-158 | |
| 359476165 | 1464 | PREDICTED: LRR receptor-like serine/thre | 0.948 | 0.500 | 0.432 | 1e-152 | |
| 224112245 | 876 | predicted protein [Populus trichocarpa] | 0.849 | 0.75 | 0.437 | 1e-150 | |
| 224134891 | 953 | predicted protein [Populus trichocarpa] | 0.934 | 0.757 | 0.422 | 1e-149 | |
| 224073436 | 1014 | predicted protein [Populus trichocarpa] | 0.944 | 0.719 | 0.422 | 1e-147 | |
| 224123984 | 1016 | predicted protein [Populus trichocarpa] | 0.952 | 0.724 | 0.428 | 1e-147 | |
| 224073452 | 710 | predicted protein [Populus trichocarpa] | 0.860 | 0.936 | 0.436 | 1e-145 | |
| 224073382 | 1309 | predicted protein [Populus trichocarpa] | 0.904 | 0.533 | 0.437 | 1e-144 | |
| 224073422 | 969 | predicted protein [Populus trichocarpa] | 0.949 | 0.757 | 0.409 | 1e-143 |
| >gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/749 (49%), Positives = 477/749 (63%), Gaps = 35/749 (4%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVN-QELHNFTNLEELILDKSDLHVSQLLSSIASFTS 66
LQ++G + SLK L LS TG + N Q L +L L + ++ H L +++ TS
Sbjct: 194 LQTVGVMTSLKVLSLSGCGLTGALPNVQGLCELIHLRVLDVSSNEFH-GILPWCLSNLTS 252
Query: 67 LKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLK 126
L+ L + + F G + + K+L LD+ SNNHF Q+P SL P FN S LK
Sbjct: 253 LQLLDLSSNQFVGDISNSPLKILKSLVDLDV-------SNNHF-QVPFSLGPFFNHSNLK 304
Query: 127 TFDGE---IWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL 183
G+ I+ E E H P+FQL SI SGY GTFP FLYHQ++L+ DLSHL+L
Sbjct: 305 HIRGQNNAIYLEAELH---SAPRFQLISIIFSGYGICGTFPNFLYHQNNLQFVDLSHLSL 361
Query: 184 SGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY 243
G FPNWL+ NNT LE L L NNSL G ++P+H + L LD+S N HIP+EIGT+
Sbjct: 362 KGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTF 421
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
LP L LN+S N F+GSIPSSF +M L LD+S NQL+G IPE +ATGCF L L LSN
Sbjct: 422 LPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSN 481
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG 363
N+LQG +FSK+FNLTNL L+LD N+F+G I SLS L+ + LSDNHLSG IP W+G
Sbjct: 482 NSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSKSA-LSIMDLSDNHLSGMIPGWIG 540
Query: 364 NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKN 423
NLS L+++ +SNN L+GPIP+EFCQL YL +LDL+NN++ G LPSC SP+ I VHLS+N
Sbjct: 541 NLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQN 600
Query: 424 KIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCE 483
IEG + S +LVTLDLS NR G IP I + L L L +N +GEIP Q+C
Sbjct: 601 MIEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQICG 660
Query: 484 LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPP 543
L ++ LI L+ NNLSG IP+CL + P + + Y P P
Sbjct: 661 LYQLSLIVLADNNLSGSIPSCLQL----DQSDSLAPDVPPVPNPLNPYYLPVRP------ 710
Query: 544 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL 603
+ FTTK SY YQG+IL+ +SGID SCNKLTGEIP ++G + I++LNLS+N
Sbjct: 711 ------MYFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYSLNLSYNRF 764
Query: 604 TGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFS 663
TG IP+TFSNLKQIESLDLSYN L+G IPSQL L L+ F VA+NNL GK P R QF+
Sbjct: 765 TGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFGKTPKRTGQFA 824
Query: 664 TFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNEEGDSLIDMDSFLITFTVSYGI 723
TFE SYEGNP LCG PL KSC + ++ A +EE + +DM++F +F VSY
Sbjct: 825 TFEVSSYEGNPNLCGLPLPKSCTEREASS-APRASAMDEESN-FLDMNTFYGSFIVSYTF 882
Query: 724 VILGIIGVLYVNPYWRRRWFYLVEMAAKT 752
VI+G+ VLY+NP WRR WF V++ +
Sbjct: 883 VIIGMFLVLYINPQWRRAWFDFVDICISS 911
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 339/737 (45%), Positives = 457/737 (62%), Gaps = 38/737 (5%)
Query: 14 LPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQ 73
L SLK L L G++ + L L+EL + +DL+ L S + + +L+ L +
Sbjct: 51 LSSLKHLNLDNNQLKGSIDMKGLCELKQLQELDISYNDLN--GLPSCLTNLNNLQVLDIS 108
Query: 74 DSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDG--- 130
+ F G + ++ L LS+NHF QIPISL P FNLS LK +G
Sbjct: 109 FNNFSGNISLSRIGSLTSIRDLK-------LSDNHF-QIPISLGPFFNLSNLKNLNGDHN 160
Query: 131 EIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNW 190
EI+ TE +N + P+FQL +SL+ + GGTFPKFLY+QHDL+ DLSH+ + G FP+W
Sbjct: 161 EIYESTELVHN-LIPRFQLQRLSLACHGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSW 219
Query: 191 LVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDL 250
L++NNT LE L L N+SL GS ++P S+ L+ LD+S+N Q IP +IG Y P L L
Sbjct: 220 LLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFL 279
Query: 251 NLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310
NLSRN F+GSIPSS ++M L LD+S N L+G IPE++ GC L L LSNN+L+G
Sbjct: 280 NLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQF 339
Query: 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALED 370
F + FNL L L L GN TG + +SLSN L L +S N+LSG+IPRW+G +S+L+
Sbjct: 340 FWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQY 399
Query: 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLE 430
+ +S NNL G +P FC +T +V+LSKNK+EG L
Sbjct: 400 LDLSENNLYGSLPSSFCSSRTMT-----------------------EVYLSKNKLEGSLI 436
Query: 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLI 490
+ L LDLS+N F G IP I L +LS LLLG N +EG+IP QLC+L+++ LI
Sbjct: 437 GALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLI 496
Query: 491 DLSHNNLSGYIPACLVYTSLGEDYHEEG-PPTSIWCDRASVYGSPCLPTQSGPPMGKEET 549
DLSHN+L G+I CL TS + E P+ R + P + ++
Sbjct: 497 DLSHNHLFGHILPCLQPTSKWQRERETSLNPSGNSLGRENRGPQIVFPVPAVEDPSMNKS 556
Query: 550 VQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT 609
V+FTTK++SY ++G IL +SGIDLSCN LTGEIP ++G L+ I LNLSHN+LTG IP
Sbjct: 557 VEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPP 616
Query: 610 TFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDS 669
TFSNLK+IESLDLSYN L+G+IP QL LN L+ F VA+NNLSGK P+ VAQFSTF +
Sbjct: 617 TFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSC 676
Query: 670 YEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNEEGDSLIDMDSFLITFTVSYGIVILGII 729
YEGNP LCG PL+++C + + T +E + +IDM++F++TF+V+Y +V+L I
Sbjct: 677 YEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIG 736
Query: 730 GVLYVNPYWRRRWFYLV 746
VLY+NP WRR WFY +
Sbjct: 737 SVLYINPRWRRAWFYFI 753
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 345/797 (43%), Positives = 456/797 (57%), Gaps = 64/797 (8%)
Query: 7 VLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTS 66
L+S+G L LK LYL G+V +EL+N NLE L L +++ S +L + TS
Sbjct: 659 TLKSLGRLSLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNIS-SSILQIVEVMTS 717
Query: 67 LKYLSMQDSVFKGALHG-QDFRKFKNLEHLDM------GWVQ-----------LILSNNH 108
LK LS++ + G+ Q K KNL+ LD+ G V L LS N
Sbjct: 718 LKALSLRSNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNR 777
Query: 109 F------------------------FQIPISLEPLFNLSKLKTFD---GEIWAETESHYN 141
F FQ + SKL+ D G ES
Sbjct: 778 FSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLESEDQ 837
Query: 142 SVTPKFQLTSISLSGYI-DGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLET 200
+ P FQL LS I G+ P FL++QHDL+ DLS+ +L +FP WL++NNT LE
Sbjct: 838 TWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEE 897
Query: 201 LLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGS 260
L L NNSL G F +P + +D+S N QG +P I LP LM LN+SRN+F GS
Sbjct: 898 LNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGS 957
Query: 261 IPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNL 320
IPS F M+ L LD+S N TG IPE +A GC LE L LS N+L G +F + NL +L
Sbjct: 958 IPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSL 1016
Query: 321 MRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEG 380
L+LD N+F+G+I D LSN L LY+S N +SG++P W+GN+S L + M NN+LEG
Sbjct: 1017 RHLELDDNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEG 1075
Query: 381 PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLV 440
PIP+EFC LD L +LDLSNN + G+LPSCFSP+ + VHL +N + G L S L
Sbjct: 1076 PIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLA 1135
Query: 441 TLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY 500
TLD+ N G IP+WI++ LS LLL N+ +G+IP QLC+L ++ ++DLS+N+LSG+
Sbjct: 1136 TLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGH 1195
Query: 501 IPACLVYTSLGEDYHE---------EGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQ 551
IP+CL + P S + + + S P + +
Sbjct: 1196 IPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAE 1255
Query: 552 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTF 611
FTTKN + +Y+G L SM+GIDLS NKLTG IP +IG L+++HALNLSHN LTG IP F
Sbjct: 1256 FTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAF 1315
Query: 612 SNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYE 671
S LK IESLDLSYN L G IP +LT L LAVF VAYNNLSGKIP+ AQF TF E+SY
Sbjct: 1316 SGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYV 1375
Query: 672 GNPFLCGWPLSKSCDDNGLTTVTTEADTKNEEGDSLIDMDSFLITFTVSYGIVILGIIGV 731
GNP+LCG L K+C + E E L D D F ++F SY +V+LG+ V
Sbjct: 1376 GNPYLCGSLLRKNC------SRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAV 1429
Query: 732 LYVNPYWRRRWFYLVEM 748
LY+N WR++WF+++++
Sbjct: 1430 LYINGGWRKKWFHVIDV 1446
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 335/765 (43%), Positives = 455/765 (59%), Gaps = 108/765 (14%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHN-FTNLEELILDKSDLHVSQLLSSIASFTS 66
+Q +G+L SLK YLS +G V +Q N NLE L S L S +L SI + TS
Sbjct: 190 IQILGALSSLK--YLSLYEVSGIVPSQGFLNILKNLEHLYSSNSTLDNS-ILQSIGTITS 246
Query: 67 LKYLSMQDSVFKGALHGQ---DFRKFKNLEHLDM------GWV-----------QLILSN 106
LK L + K L+GQ NL+ LDM G++ +L LS+
Sbjct: 247 LKILEL----VKCRLNGQLPIGLCNLNNLQELDMRDNDISGFLIPCLANLTSLQRLDLSS 302
Query: 107 NHFFQIPISLEPLFNLSKLKTF---DGEIWAETESHYNSVTPKFQLTSISLSGYIDGG-T 162
NH +IP+SL PL+NLSKLK+F D EI+AE + H +++PKFQL S+ LS + G
Sbjct: 303 NHL-KIPMSLSPLYNLSKLKSFHGLDNEIYAEEDDH--NLSPKFQLQSLYLSNHGQGARA 359
Query: 163 FPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKL 222
FP+FLYHQ +L++ DL+++ + G+FPNWL+ENNT L+ L L N SL G F +P +S+ L
Sbjct: 360 FPRFLYHQLNLQSLDLTNIQMKGDFPNWLIENNTYLKNLYLENCSLSGPFLLPKNSHMNL 419
Query: 223 AILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLT 282
+IL +S N+ QG IP EIG +LP L L++S N FNGSIPSS ++M +L LD+S N LT
Sbjct: 420 SILSISMNYLQGQIPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNMSLLRDLDLSNNVLT 479
Query: 283 GEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCR 342
G IP+ + T L L LSNN+LQG I DS+SNC
Sbjct: 480 GRIPKHLTTSLCLFNFLILSNNSLQG------------------------AIPDSMSNCS 515
Query: 343 LLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402
L L +S+N+LS RIP W+ ++S L+ + +S NN GP+P
Sbjct: 516 SLQLLDVSNNNLSPRIPGWIWSMSFLDFLDLSRNNFSGPLP------------------- 556
Query: 403 FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQ 462
P+ + + + V+LS+NK++G + ++ L+TLDLS+N G+IP WI L +
Sbjct: 557 ----PTISTSSTLRYVYLSRNKLQGLITKAFYNFSTLLTLDLSHNNLIGTIPEWIGSLSK 612
Query: 463 LSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTS 522
L LLL N +EGEIP+QLC+L + LIDLSHN+LSG I +C+ TSL P S
Sbjct: 613 LRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHNHLSGNILSCM--TSLA--------PFS 662
Query: 523 IWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE 582
D V S ++ ++FTTKN+S Y+G I+ SGID SCN TG+
Sbjct: 663 ALTDATIVETS-------------QQYLEFTTKNVSLIYRGSIVKLFSGIDFSCNNFTGK 709
Query: 583 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLA 642
IP +I L++I ALNLSHN+L G IP TFS LK+IESLDLS+N L G+IP QLT L +L
Sbjct: 710 IPPEIENLSKIKALNLSHNSLIGPIPPTFSRLKEIESLDLSHNKLDGEIPPQLTELFSLE 769
Query: 643 VFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNE 702
+F VA+NNLSGK P RVAQF+TFEE Y+ NPFLCG PL K C G + + + NE
Sbjct: 770 IFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKIC---GASMLPSPTSMNNE 826
Query: 703 EGDSLIDMDSFLITFTVSYGIVILGIIGVLYVNPYWRRRWFYLVE 747
+ IDM+ F ++F ++Y +V++ I+ VLY+NPYWRR WF+ E
Sbjct: 827 DNGGFIDMEVFYVSFGIAYIMVLVVIVAVLYINPYWRRAWFHFTE 871
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 325/770 (42%), Positives = 446/770 (57%), Gaps = 48/770 (6%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
LQ+IG+LP+LK L ++ + GT+ Q NL++L L +++ S L + + +SL
Sbjct: 190 LQNIGALPALKVLSVAECDLHGTLPAQGWCELKNLKQLDLARNNFGGS-LPDCLGNLSSL 248
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
+ L + ++ F G +LE L +LSNN F++PIS++P N S LK
Sbjct: 249 QLLDVSENQFTGNFTSGPLTNLISLEFL-------LLSNN-LFEVPISMKPFLNHSSLKF 300
Query: 128 FDGE--IWAETESHYNSVTPKFQLTSISLSGYIDG---GTFPKFLYHQHDLKNADLSHLN 182
F E ++++ PKFQL LS P FLY+Q DL+ DLSH N
Sbjct: 301 FSSENNRLVTEPVAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNN 360
Query: 183 LSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242
++G FP+WL++NNT LE L L+ N G+ ++ H Y + LD+S N G I +I
Sbjct: 361 ITGMFPSWLLKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICL 420
Query: 243 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALS 302
P L L +++N F G IPS ++ L LD+S NQL+ E++ + +L LS
Sbjct: 421 IFPNLWTLRMAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLT-----IPVLKLS 475
Query: 303 NNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISD-SLSNCRLLAGLYLSDNHLSGRIPRW 361
NN+L G I + FN + L L+GNNF+G+ISD L + L L LS+N SG +PR
Sbjct: 476 NNSLGGQIPTSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRI 535
Query: 362 LGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLS 421
N + L + +S N+ +GPIP +FC+L L LDLS N + G +PSCFSP + VHLS
Sbjct: 536 FVNFTDLRVLDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLS 595
Query: 422 KNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481
KN++ G L +S YLVT+DL N GSIPNWI LS LLL N+ +GE+PVQL
Sbjct: 596 KNRLSGPLTYGFFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQL 655
Query: 482 CELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE----GPPTSIWCDRASVYGSPCLP 537
C L+++ ++D+S N LSG +P+CL + E + G + + Y +
Sbjct: 656 CLLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKARMDLGASIVLESMEKAYYKT---- 711
Query: 538 TQSGPPM-------GK-------EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI 583
GPP+ GK EE ++F TKNM Y Y+G IL+ MSGIDLS N G I
Sbjct: 712 --MGPPLVDSVYLLGKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAI 769
Query: 584 PTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAV 643
P + G L+ I +LNLSHNN T +IP TFSNLKQIESLDLSYN L+G IP QLT + TL V
Sbjct: 770 PQEFGNLSEIRSLNLSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEV 829
Query: 644 FKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNEE 703
F VA+NNLSG P+R QF TF+E YEGNPFLCG PL +C + V+++ +E+
Sbjct: 830 FSVAHNNLSGWTPERKYQFGTFDESCYEGNPFLCGPPLRNNC---SVEPVSSQPVPDDEQ 886
Query: 704 GD-SLIDMDSFLITFTVSYGIVILGIIGVLYVNPYWRRRWFYLVEMAAKT 752
GD IDM+ F I+F V Y +V++ I VLY+NPYWRRRW Y +E T
Sbjct: 887 GDVGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDT 936
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 326/772 (42%), Positives = 453/772 (58%), Gaps = 42/772 (5%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
LQ+IG+LP LK L ++ + GT+ Q NL +L L ++L S L + + +SL
Sbjct: 241 LQNIGALPDLKVLSVAECDLHGTLPAQGWCELKNLRQLDLSGNNLGGS-LPDCLGNLSSL 299
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
+ L + ++ F G + +LE L + +N+ F++PIS++P N S LK
Sbjct: 300 QLLDVSENQFTGNIASGPLTNLTSLEFLSL--------SNNLFEVPISMKPFMNHSSLKF 351
Query: 128 FDGE--IWAETESHYNSVTPKFQLTSISLSGYIDG--GTFPKFLYHQHDLKNADLSHLNL 183
F E + ++++ PKFQL LS + P FLY+Q+D++ DLSH N+
Sbjct: 352 FSSENNKLVTEPAAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNI 411
Query: 184 SGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY 243
+ FP+WL++NNT LE L L+NNS G+ ++ H Y + LD+S N G IP +I
Sbjct: 412 TAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLI 471
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
P + L ++ N F G IPS ++ L+ LD+S NQL+ E++ T FL LSN
Sbjct: 472 FPNMWSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLTTIWFL----KLSN 527
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSL-SNCRLLAGLYLSDNHLSGRIPRWL 362
NNL G + + FN + L L L GNNF G+ISD L ++ + L LSDN SG +PRWL
Sbjct: 528 NNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWL 587
Query: 363 GNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSK 422
N + L I +S N +GPI +FC+L+ L LDLS N + G +PSCFSP I VHLS+
Sbjct: 588 VNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSE 647
Query: 423 NKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLC 482
N++ G L +++ LVT+DL N F GS PNWI L LS LLL N+ +GE+PVQLC
Sbjct: 648 NRLSGPLTYGFYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLC 707
Query: 483 ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGP 542
L+++ ++D+S N LSG +P+CL + E + + D S GP
Sbjct: 708 LLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKT--LADLGADVLSRSIEKAYYETMGP 765
Query: 543 PMGK--------------EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIG 588
P+ + EE ++FTTKNM Y Y+G+ L+ MSGIDLS N G IP + G
Sbjct: 766 PLVESMYNLRKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFG 825
Query: 589 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAY 648
L++I +LNLSHNNLTG+IP TFSNLKQIESLDLSYN L+G IP QLT + TL VF VA+
Sbjct: 826 DLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAH 885
Query: 649 NNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTT-------VTTEADTKN 701
NNLSG P+R QF TF+E YEGNPFLCG PL +C + + + V ++ +
Sbjct: 886 NNLSGNTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYD 945
Query: 702 EEGDS-LIDMDSFLITFTVSYGIVILGIIGVLYVNPYWRRRWFYLVEMAAKT 752
E+GD IDM+ F I F V Y +V++ I+ VLY++PYWRRRW Y +E T
Sbjct: 946 EQGDDGFIDMEFFYINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDT 997
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 329/768 (42%), Positives = 439/768 (57%), Gaps = 32/768 (4%)
Query: 2 IDGSKV----LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQL 57
+DGS + L +IG LP+LK L + GT+ Q L NLE+L L +++L S L
Sbjct: 247 LDGSSLPLNFLHNIGVLPALKVLSAGECDLNGTLPAQGLCGLKNLEQLFLSENNLEGS-L 305
Query: 58 LSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLE 117
+ +SL+ L + + F G + +LE + LSNNHF Q+PIS++
Sbjct: 306 PDCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFIS-------LSNNHF-QVPISMK 357
Query: 118 PLFNLSKLKTF--DGEIWAETESHYNSVTPKFQLTSISLSGYIDGG---TFPKFLYHQHD 172
P N S L+ F D ++ + PKFQL SLS P FLY+QHD
Sbjct: 358 PFMNHSSLRFFSSDNNRLVTEPMSFHDLIPKFQLVFFSLSKSSSEALNVETPSFLYNQHD 417
Query: 173 LKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFF 232
L+ DLS + G FP+WL++NNT LE L L NS FG+ ++ H + +D+S N
Sbjct: 418 LRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNM 477
Query: 233 QGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATG 292
G IP I L L +++N G IPS + L LD+S NQL+ E+ T
Sbjct: 478 HGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQFIT- 536
Query: 293 CFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCR-LLAGLYLSD 351
L L LSNNNL G + + N + L L L NNF G+ISD S + + L LS+
Sbjct: 537 ---LTFLKLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSN 593
Query: 352 NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS 411
N SG +PRW NL+ + I +S N+ GPIP+EFC+LD L LDLS+N +F ++PSCF+
Sbjct: 594 NQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFN 653
Query: 412 PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNN 471
P I VHLSKN++ G L ++S LVTLDL N F GSI NWI L LS LLL N
Sbjct: 654 PPHITHVHLSKNRLSGPLTYGFYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRAN 713
Query: 472 YIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEG-------PPTSIW 524
+GE VQLC L+++ ++D+S N LSG +P+CL S E Y + T I
Sbjct: 714 NFDGEFLVQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIE 773
Query: 525 CDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP 584
+ L S P+ EE ++FT K+M Y Y+G+IL+ MSGIDLS NK +G IP
Sbjct: 774 KAYYEFNQTRALLGSSYIPITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIP 833
Query: 585 TQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVF 644
++G L+ + ALNLSHNNLTG+IP TFSNLKQIES DLSYN L G IP +L + TL VF
Sbjct: 834 PELGNLSELLALNLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVF 893
Query: 645 KVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNEEG 704
VA+NNLSG+ P+R QF TF+E SYEGNPFLCG PL +C + ++ D +E
Sbjct: 894 SVAHNNLSGETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDK--QED 951
Query: 705 DSLIDMDSFLITFTVSYGIVILGIIGVLYVNPYWRRRWFYLVEMAAKT 752
D IDM+ F I+ V Y +V++GI VLY+NPYWR WF ++ T
Sbjct: 952 DGFIDMNFFYISLGVGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDT 999
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 312/715 (43%), Positives = 420/715 (58%), Gaps = 50/715 (6%)
Query: 65 TSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSK 124
+SL+ L + ++ F G + F NL L+ L LSNN F++PIS++P N S
Sbjct: 2 SSLQLLDVSENQFTGNIA---FGPLTNLISLEF----LSLSNN-LFEVPISIKPFMNHSS 53
Query: 125 LKTFDGE--IWAETESHYNSVTPKFQLTSISLSGYIDG---GTFPKFLYHQHDLKNADLS 179
LK F E + ++++ PKFQL LS P FLY+Q DL+ DLS
Sbjct: 54 LKFFSSENNKLVTEPAAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLS 113
Query: 180 HLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239
H N++G FP+WL++NNT LE L L++NS G+ ++ H + + LD+S N G IP +
Sbjct: 114 HNNITGMFPSWLLKNNTRLEQLYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKD 173
Query: 240 IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEIL 299
I P L L +++N F G IPS ++ L LD+S NQL+ E++ T + +L
Sbjct: 174 ICLIFPNLHTLRMAKNGFTGCIPSCLGNISSLSFLDLSNNQLSTVKLEQLTT----IWVL 229
Query: 300 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISD-SLSNCRLLAGLYLSDNHLSGRI 358
LSNNNL G I + FN + L L L+GNNF G+ISD L + L LS+N SG +
Sbjct: 230 KLSNNNLGGKIPTSVFNSSRLNFLYLNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGML 289
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQV 418
PR N S L I +S N+ +GPIP +FC+ D L LDLS N + G +PSCFSP I V
Sbjct: 290 PRSFVNFSILGVIDLSGNHFKGPIPRDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHV 349
Query: 419 HLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478
HLSKN++ G L +S YLVT+DL N F GSIPNWI L LS LLL N+ +GE+P
Sbjct: 350 HLSKNRLSGPLTYAFFNSSYLVTMDLRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELP 409
Query: 479 VQLCELKEVRLIDLSHNNLSGYIPACL--------------------VYTSLGEDYHE-E 517
+QLC L+++ ++D+SHN LSG +P+CL + S+ + Y+E
Sbjct: 410 IQLCLLEQLSILDVSHNQLSGPLPSCLGNLTFKKSDKKAILEVAYGFISESIEKAYYEIM 469
Query: 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCN 577
GPP D + EE +FTTKNM Y Y+G++L M GIDLS N
Sbjct: 470 GPPLVDSVDNLRNFFLFNF---------TEEVTEFTTKNMYYGYKGKVLNYMFGIDLSNN 520
Query: 578 KLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637
G IP + G L++I ++NLSHNNLTG+IP TFSNL IESLDLSYN L+G IP Q T
Sbjct: 521 NFIGAIPPEFGNLSKILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLNGAIPPQFTE 580
Query: 638 LNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEA 697
+ TL VF VA+NNLSGK P+R+ QF TF+E YEGNPFLCG PL +C + + +
Sbjct: 581 VTTLEVFSVAHNNLSGKTPERIYQFGTFDESCYEGNPFLCGPPLPNNCSEKAVVSQPVPN 640
Query: 698 DTKNEEGDSLIDMDSFLITFTVSYGIVILGIIGVLYVNPYWRRRWFYLVEMAAKT 752
D + ++G IDM+ F I+F V Y +V++ I VLY+NPYWRRRW Y +E T
Sbjct: 641 DEQGDDG--FIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDT 693
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 321/733 (43%), Positives = 435/733 (59%), Gaps = 34/733 (4%)
Query: 41 NLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWV 100
NL++L L ++ S L + + +SL+ L + ++ F G + F NL L+
Sbjct: 573 NLKQLDLSGNNFGGS-LPDCLGNLSSLQLLDISENQFTGNIA---FSPLTNLISLEF--- 625
Query: 101 QLILSNNHFFQIPISLEPLFNLSKLKTFDGE--IWAETESHYNSVTPKFQLTSISLSGYI 158
L LSNN F++P S++P N S LK F E + ++ + PKFQL SLS
Sbjct: 626 -LSLSNN-LFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLIPKFQLVFFSLSKTT 683
Query: 159 DG--GTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPI 216
+ P FLY+Q+ L+ DLSH N++G FP+WL++NNT LE L L+ NS+ G+ ++
Sbjct: 684 EALNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQD 743
Query: 217 HSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI 276
H Y K+ LD+S N G IP +I P L L +++N F G IPS +M L LD+
Sbjct: 744 HPYPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDL 803
Query: 277 SYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISD 336
S NQL+ E + T FL LSNNNL G I + FN + L L NNF G+ISD
Sbjct: 804 SNNQLSTVKLELLTTIWFL----KLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISD 859
Query: 337 S-LSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEF-CQLDYLTI 394
S L+ + L LS+N SG +PRW N + L I +S N+ EGPI F C+LD L
Sbjct: 860 SPLNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEY 919
Query: 395 LDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP 454
LDLS N +FG +PSCF+ I VHLSKN++ G L+ ++S LVT+DL N F GSIP
Sbjct: 920 LDLSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKYEFYNSSSLVTMDLRDNSFTGSIP 979
Query: 455 NWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDY 514
NW+ L LS LLL N+++GE+PVQLC L+++ ++D+S N LSG +P+CL + E
Sbjct: 980 NWVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKESS 1039
Query: 515 HEEGP-------PTSIWCDRASVYGSPCLPT-----QSGPPMGKEETVQFTTKNMSYYYQ 562
+ P I + G P + + + P EE ++FTTKNM Y Y+
Sbjct: 1040 QKALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVIEFTTKNMYYGYK 1099
Query: 563 GRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL 622
G+IL+ MSGIDLS N G IP + G L+ I +LNLSHNNLTG+IP TFSNLK+IESLDL
Sbjct: 1100 GKILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIESLDL 1159
Query: 623 SYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682
SYN +G IP QLT + TL VF VA+NNLSGK P+R QF TF+E YEGNPFLCG PL
Sbjct: 1160 SYNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLR 1219
Query: 683 KSCDDNGLTT---VTTEADTKNEEGDSLIDMDSFLITFTVSYGIVILGIIGVLYVNPYWR 739
+C + + + ++ +E D IDM+ F I+F+V Y +V++ I VLY+NPYWR
Sbjct: 1220 NNCSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVLYINPYWR 1279
Query: 740 RRWFYLVEMAAKT 752
RRW Y +E T
Sbjct: 1280 RRWLYFIEDCIDT 1292
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 320/781 (40%), Positives = 448/781 (57%), Gaps = 47/781 (6%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
LQ+ +LP+LK L + + GT+ Q NL++L L +++ L + + +SL
Sbjct: 216 LQNTRALPALKVLSVGECDLHGTLPAQGWCELKNLKQLDLARNNFG-GALPDCLGNLSSL 274
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
L + ++ F G + +LE L + +N+ F++P S++P N S LK
Sbjct: 275 TLLDVSENQFTGNIVSGPLTNLVSLEFLSL--------SNNLFEVPTSMKPFMNHSSLKF 326
Query: 128 FDGE--IWAETESHYNSVTPKFQLTSISLSGYIDGGT--FPKFLYHQHDLKNADLSHLNL 183
F E + ++++ PKFQL +SL + P FLY+Q+DL+ DLSH N+
Sbjct: 327 FSSENNRLVTEPAAFDNLIPKFQLVFLSLLKTTEALNVHIPDFLYYQYDLRVLDLSHNNI 386
Query: 184 SGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY 243
+G FP+WL++NNT +E L L++NS G+ ++P H Y + LD+S N IP +I
Sbjct: 387 TGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNMNSQIPKDICLI 446
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
LP L L + +N F G IPS ++ L LD+S NQL+ E + T L L LSN
Sbjct: 447 LPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLTT----LMFLKLSN 502
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEI-SDSLSNCRLLAGLYLSDNHLSGRIPRWL 362
NNL G I FN + L L L+GNNF G+I SL ++ L LS+N SG +PRW
Sbjct: 503 NNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSNNQFSGMLPRWF 562
Query: 363 GNLSALEDIRMSNNNLEGPIPIEF-CQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLS 421
N + LE I +S N+ +GPIP +F C+ D+L LDLS N + G +PSCFSP I +HLS
Sbjct: 563 VNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCFSPPQITHLHLS 622
Query: 422 KNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481
KN++ G L ++S LVT+DL N F SIPNWI L LS LLL N+ +
Sbjct: 623 KNRLSGPLTYGFYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLLLRANHFD------- 675
Query: 482 CELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSG 541
+++ ++D+S N LSG +P+CL + E + I+ S+ + G
Sbjct: 676 ---EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKAILDFVIFDISRSIEKT--YYETMG 730
Query: 542 PPM------GK-------EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIG 588
PP+ GK EE ++FTTK MSY Y+G++L MSGIDLS N G IP + G
Sbjct: 731 PPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGYKGKVLNYMSGIDLSNNNFVGAIPPEFG 790
Query: 589 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAY 648
L+ I +LNLSHNNLTG+IP TFSNLKQIESLDLSYN L+G IP QLT + TL VF VA+
Sbjct: 791 NLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAH 850
Query: 649 NNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNEEGDSLI 708
NNLSGK P+R QF TF+E YEGNPFLCG PL +C + +++ D + ++G +
Sbjct: 851 NNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVSSQPVPNDEQGDDG--FV 908
Query: 709 DMDSFLITFTVSYGIVILGIIGVLYVNPYWRRRWFYLVEMAAKTN-RFGALLLHIITGKR 767
DM+ F I+F V Y +V++ I VLY+NPYWRRRW + +E T FG H + R
Sbjct: 909 DMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLFFIEDCIDTCYYFGVASFHKFSNFR 968
Query: 768 S 768
+
Sbjct: 969 T 969
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | ||||||
| TAIR|locus:2025012 | 1083 | RLP1 "AT1G07390" [Arabidopsis | 0.887 | 0.633 | 0.371 | 2.4e-110 | |
| TAIR|locus:2037313 | 1000 | RLP13 "AT1G74170" [Arabidopsis | 0.932 | 0.721 | 0.368 | 6.5e-106 | |
| TAIR|locus:2101943 | 891 | RLP45 "AT3G53240" [Arabidopsis | 0.934 | 0.810 | 0.354 | 3.6e-105 | |
| TAIR|locus:2037308 | 976 | RLP14 "AT1G74180" [Arabidopsis | 0.928 | 0.735 | 0.360 | 3.4e-100 | |
| TAIR|locus:2040075 | 935 | RLP21 "AT2G25470" [Arabidopsis | 0.934 | 0.772 | 0.358 | 4.1e-97 | |
| TAIR|locus:2019662 | 965 | RLP15 "AT1G74190" [Arabidopsis | 0.935 | 0.749 | 0.309 | 1.3e-84 | |
| TAIR|locus:2155909 | 908 | RLP56 "AT5G49290" [Arabidopsis | 0.661 | 0.562 | 0.357 | 4.7e-74 | |
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.857 | 0.530 | 0.295 | 4.6e-61 | |
| TAIR|locus:2005498 | 1196 | BRI1 "BRASSINOSTEROID INSENSIT | 0.856 | 0.553 | 0.301 | 2.7e-60 | |
| TAIR|locus:2156349 | 1252 | GSO2 "GASSHO 2" [Arabidopsis t | 0.847 | 0.523 | 0.302 | 3.4e-60 |
| TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1021 (364.5 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 268/722 (37%), Positives = 367/722 (50%)
Query: 47 LDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSN 106
LD S ++ L + + T L+ L + ++ G L LE+L + L N
Sbjct: 363 LDLSSNALTSLPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLSL------LDN 416
Query: 107 NHFFQIPISLEPLFNLSKLKTFD-----GEIWAETESHYNSVTPKFQLTSISLSGYIDGG 161
N F L N ++L F G I +TES + P FQL + LS G
Sbjct: 417 N--FDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSW---APLFQLKMLYLSNCSLGS 471
Query: 162 TFPKFLYHQHDLKNADLSHLNLSGNFPXXXXXXXXXXXXXXXXXXXXFGSFRMPIHSYQK 221
T FL HQ DL DLSH L+G FP ++PI +
Sbjct: 472 TMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNS-LTKLQLPILVHG- 529
Query: 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQL 281
L +LD+S N I +IG P L +N S N F G+IPSS +MK L+ LD+S N L
Sbjct: 530 LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGL 589
Query: 282 TGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNC 341
G++P +GC+ L +L LSNN LQG IFSK NLT L+ L LDGNNFTG + + L
Sbjct: 590 YGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKS 649
Query: 342 RLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNA 401
+ L L +SDN SG +P W+G +S L + MS N L+GP P Q ++ ++D+S+N+
Sbjct: 650 KNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNS 708
Query: 402 IFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILP 461
G++P + + ++ L N+ G + + + L LDL N F G I N I+
Sbjct: 709 FSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTS 768
Query: 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPT 521
+L LLL NN + IP ++C+L EV L+DLSHN G IP+C S G + ++
Sbjct: 769 KLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSL 828
Query: 522 SIWCDRASV-------YGSPCLPTQSGPPMG---KEETV-QFTTKNMSYYYQGRILTSMS 570
D + + YGS L G G K TV F TK+ YQG IL M
Sbjct: 829 VADFDFSYITFLPHCQYGSH-LNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMH 887
Query: 571 GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630
G+DLS N+L+GEIP +IG L I +LNLS N LTG+IP + S LK +ESLDLS N L G
Sbjct: 888 GLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGS 947
Query: 631 IPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGL 690
IP L LN+L ++YNNLSG+IP + TF+E SY GN LCG P +K+C +
Sbjct: 948 IPPALADLNSLGYLNISYNNLSGEIPFK-GHLVTFDERSYIGNAHLCGLPTNKNCISQRV 1006
Query: 691 T---TVTTEA-DTKNEEGDSLIDMDSFLITFTVSXXXXXXXXXXXXXXNPYWRRRWFYLV 746
+V+T A + +NEE ++IDM F T + W R WFY V
Sbjct: 1007 PEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFYRV 1066
Query: 747 EM 748
++
Sbjct: 1067 DL 1068
|
|
| TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
Identities = 283/768 (36%), Positives = 397/768 (51%)
Query: 3 DGSKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFT----------NLEELILDKSDL 52
+GS ++++ +L LK L LS F+ +V Q T N+EEL L + L
Sbjct: 211 NGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKL 270
Query: 53 HVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQI 112
Q + S T L+ L + + G + NLE L+ ++ L NN F+
Sbjct: 271 -AGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA----LANLESLE--YLSLF-GNN--FEG 320
Query: 113 PISLEPLFNLSKLKTF--DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQ 170
SL L NLSKLK D + + S PKFQL I+L + P FL HQ
Sbjct: 321 FFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRS-CNLEKVPHFLLHQ 379
Query: 171 HDLKNADLSHLNLSGNFPXXXXXXXXXXXXXXXXXXXXFGSFRMPIHSYQKLAILDVSKN 230
DL + DLS + GNFP F SF++P S L L+VS N
Sbjct: 380 KDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNS-FTSFQLP-KSAHNLLFLNVSVN 437
Query: 231 FFQGHIPVE-IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERM 289
F H+ ++ G LP L+ +NL+ N F G++PSS +MK +E LD+S+N+ G++P R
Sbjct: 438 KFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRF 496
Query: 290 ATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYL 349
GC+ L IL LS+N L G +F + N T L + +D N FTG I + L L +
Sbjct: 497 LKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDI 556
Query: 350 SDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSC 409
S+N L+G IP W+G L +++SNN LEG IP + YL +LDLS+N + G +P
Sbjct: 557 SNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPH 616
Query: 410 FSPAFIEQVHLSKNKIEGQLESIIHDSPYL--VTLDLSYNRFHGSIPNWINILPQLSSLL 467
S + V L +N L +I D+ L + LDL NR G++P +IN +S LL
Sbjct: 617 VSSIYHGAVLLLQNN---NLSGVIPDTLLLNVIVLDLRNNRLSGNLPEFINT-QNISILL 672
Query: 468 L-GNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLG----EDYHEEGPPTS 522
L GNN+ G+IP Q C L ++L+DLS+N +G IP+CL TS G +D + P+
Sbjct: 673 LRGNNFT-GQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPSR 731
Query: 523 IWCDRASVYGSPCLPTQSGPPMGKEET---VQFTTKNMSYYYQGRILTSMSGIDLSCNKL 579
+ VY L + + + ++F TK+ Y G L + G+DLS N+L
Sbjct: 732 FGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENEL 791
Query: 580 TGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLN 639
+GEIP ++G L + ALNLSHNNL+G I +FS LK +ESLDLS+N L G IP QLT +
Sbjct: 792 SGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMI 851
Query: 640 TLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADT 699
+LAVF V+YNNLSG +P QF+TFE SY GNP LCG + SC N D
Sbjct: 852 SLAVFNVSYNNLSGIVPQG-RQFNTFETQSYFGNPLLCGKSIDISCASNNFHPT----DN 906
Query: 700 KNEEGDSLIDMDSFLITFTVSXXXXXXXXXXXXXXNPYWRRRWFYLVE 747
E +S +DM+SF +F + + W R WFY+V+
Sbjct: 907 GVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVD 954
|
|
| TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 269/759 (35%), Positives = 406/759 (53%)
Query: 4 GSKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIAS 63
G Q + +L +L+ L LS F+G++ Q + L+EL L ++ ++ +
Sbjct: 142 GQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRNRFE-GEIPLCFSR 200
Query: 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLS 123
F+ L+ L + + G + FK++E+L + L N+ F+ SL + L+
Sbjct: 201 FSKLRVLDLSSNHLSGKIP-YFISDFKSMEYLSL------LDND--FEGLFSLGLITELT 251
Query: 124 KLKTFD----GEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLS 179
+LK F + E++ + QL+SI LS + + G P FL++Q +L+ DLS
Sbjct: 252 ELKVFKLSSRSGMLQIVETNVSGGLQS-QLSSIMLS-HCNLGKIPGFLWYQQELRVIDLS 309
Query: 180 HLNLSGNFPXXXXXXXXXXXXXXXXXXXXFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239
+ LSG FP F + +P + ++L ILD+S N F +P +
Sbjct: 310 NNILSGVFPTWLLENNTELQALLLQNNS-FKTLTLP-RTMRRLQILDLSVNNFNNQLPKD 367
Query: 240 IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEIL 299
+G L L LNLS N F G++PSS A M+ +E +D+SYN +G++P + TGC+ L L
Sbjct: 368 VGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWL 427
Query: 300 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP 359
LS+N G I K + T+L+ L +D N FTG+I +L N R+L+ + LS+N L+G IP
Sbjct: 428 KLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIP 487
Query: 360 RWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVH 419
RWLGN LE +R+SNN L+G IP + YL +LDLS N + G+LP S + +
Sbjct: 488 RWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYILD 546
Query: 420 LSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPV 479
L N + G + + L LDL N+ G+IP + + P +S +LL N + G+IPV
Sbjct: 547 LHNNNLTGSIPDTLWYG--LRLLDLRNNKLSGNIPLFRST-PSISVVLLRENNLTGKIPV 603
Query: 480 QLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGP----PTSIWCDRASVYG--- 532
+LC L VR++D +HN L+ IP+C+ S G H P S+ + +Y
Sbjct: 604 ELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVY 663
Query: 533 --SPCLPTQSGPPMGKEETVQ--FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIG 588
S + + + VQ F K Y L M G+DLS N+L+G IP ++G
Sbjct: 664 YESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELG 723
Query: 589 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAY 648
L R+ +LNLS N+L+G+IP +FSNL+ IESLDLS+N LHG IPSQLT+L +L VF V+Y
Sbjct: 724 DLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSY 783
Query: 649 NNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNEEGDSLI 708
NNLSG IP QF+TF E SY GN LCG P +SC G TT+++ + ++++ L+
Sbjct: 784 NNLSGVIPQG-KQFNTFGEKSYLGNFLLCGSPTKRSC---GGTTISSGKEYEDDDESGLL 839
Query: 709 DMDSFLITFTVSXXXXXXXXXXXXXXNPYWRRRWFYLVE 747
D+ + + + WRR WF LV+
Sbjct: 840 DIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVD 878
|
|
| TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 274/760 (36%), Positives = 391/760 (51%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
LQ + L +L+ L L++ + G + + NL +L L + + QL + + L
Sbjct: 228 LQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDL-RGNYFEGQLPVCLGNLNKL 286
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
+ L + + G L F ++LE+L LS+N+F SL PL NL+KLK
Sbjct: 287 RVLDLSSNQLSGNLPAS-FNSLESLEYLS-------LSDNNFEGF-FSLNPLANLTKLKV 337
Query: 128 F----DGE-IWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLN 182
F E + ETES++ PKFQLT +L + G P FL +Q +L+ DLS
Sbjct: 338 FRLSSTSEMLQVETESNW---LPKFQLTVAALP-FCSLGKIPNFLVYQTNLRLVDLSSNR 393
Query: 183 LSGNFPXXXXXXXXXXXXXXXXXXXXFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242
LSG+ P F F++P + KL +LD S N G +P IG
Sbjct: 394 LSGDIPTWLLENNPELKVLQLKNNS-FTIFQIPTIVH-KLQVLDFSANDITGVLPDNIGH 451
Query: 243 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALS 302
LP L+ +N S N F G++PSS +M + LD+SYN +GE+P + TGCF L L LS
Sbjct: 452 VLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLS 511
Query: 303 NNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWL 362
+N+ G I + LT+L+ L++ N FTGEI L L+ S+N L+G I +
Sbjct: 512 HNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSI 571
Query: 363 G-NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF-SPAFIEQVHL 420
+ S L + +SNN LEG +P + +L LDLS N + G LPS + + ++ L
Sbjct: 572 PPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFL 631
Query: 421 SKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQ 480
N G L + ++ Y+ LDL N+ GSIP ++N ++ LL GNN + G IP +
Sbjct: 632 HNNSFTGPLPVTLLENAYI--LDLRNNKLSGSIPQFVNTGKMITLLLRGNN-LTGSIPRK 688
Query: 481 LCELKEVRLIDLSHNNLSGYIPACLVY--TSLGEDYHEEGPPTSI-WCDRASV--YGSPC 535
LC+L +RL+DLS N L+G IP CL + T LGE G I + D + Y S
Sbjct: 689 LCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTF 748
Query: 536 LPTQSGPPMGKEET-----VQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYL 590
L + + + T ++F K + G L M G+DLS N+L+G IP ++G L
Sbjct: 749 LVDEF--MLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDL 806
Query: 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNN 650
+++ ALNLS N L+ +IP FS LK IESLDLSYN+L G IP QLT L +LAVF V++NN
Sbjct: 807 SKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNN 866
Query: 651 LSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNEEGD---SL 707
LSG IP QF+TF ++SY GNP LCG P +SC+ T + EE D +
Sbjct: 867 LSGIIPQG-GQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAA 925
Query: 708 IDMDSFLITFTVSXXXXXXXXXXXXXXNPYWRRRWFYLVE 747
IDM T + + WRR W +V+
Sbjct: 926 IDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVD 965
|
|
| TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 274/764 (35%), Positives = 378/764 (49%)
Query: 2 IDGSKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSI 61
++GS +Q + L LK L LS F+ ++ QEL N NLE L L ++ + +
Sbjct: 185 LNGS--MQELIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNHVDGPIPIEVF 242
Query: 62 ASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFN 121
+L+ L ++ + F G + K L LD+ SN +P S L +
Sbjct: 243 CKLKNLRDLDLKGNHFVGQIP-LCLGSLKKLRVLDLS------SNQLSGDLPSSFSSLES 295
Query: 122 LSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHL 181
L L D + N +T L + + + P FL +Q L+ DLS
Sbjct: 296 LEYLSLSDNNF--DGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVDLSSN 353
Query: 182 NLSGNFPXXXXXXXXXXXXXXXXXXXXFGSFRMP--IHSYQKLAILDVSKNFFQGHIPVE 239
NLSGN P F F +P +H+ Q I D S N G P +
Sbjct: 354 NLSGNIPTWLLTNNPELEVLQLQNNS-FTIFPIPTMVHNLQ---IFDFSANNI-GKFPDK 408
Query: 240 IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEIL 299
+ LP L+ LN S N F G P+S +MK + LD+SYN +G++P TGC + L
Sbjct: 409 MDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFL 468
Query: 300 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP 359
LS+N G ++ N +L L++D N FTG I LSN +L L +S+N LSG IP
Sbjct: 469 KLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIP 528
Query: 360 RWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVH 419
RWL L+ + +SNN LEG IP + +L+ LDLS N G LPS +
Sbjct: 529 RWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMF 588
Query: 420 LSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPV 479
L N G + + S + LDL N+ GSIP + + ++ LLL N + G IP
Sbjct: 589 LHNNNFTGPIPDTLLKSVQI--LDLRNNKLSGSIPQFDDT-QSINILLLKGNNLTGSIPR 645
Query: 480 QLCELKEVRLIDLSHNNLSGYIPACLVYTSLG---EDYHEEG-PPTSIWCD-RASVYGSP 534
+LC+L VRL+DLS N L+G IP+CL S G ED PP+ + +Y S
Sbjct: 646 ELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALNIPPSFLQTSLEMELYKST 705
Query: 535 CLPTQSGPPMGK-EET-VQFTTKNMSYYYQGR------ILTSMSGIDLSCNKLTGEIPTQ 586
L + +ET ++F K Y GR IL M G+DLS N+L+G IPT+
Sbjct: 706 FLVDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTE 765
Query: 587 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646
+G L ++ LNLSHN+L G+IP++FS L +ESLDLS+N+L G IP L+ L +LAVF V
Sbjct: 766 LGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDV 825
Query: 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNEEGD- 705
+ NNLSG IP QF+TFEE+SY GNP LCG P S+SC+ N EAD EE D
Sbjct: 826 SSNNLSGIIPQG-RQFNTFEEESYLGNPLLCGPPTSRSCETN---KSPEEADNGQEEEDD 881
Query: 706 -SLIDMDSFLI-TFTVSXXXXXXXXXXXXXXNPYWRRRWFYLVE 747
+ IDM F T ++ P WRR W +V+
Sbjct: 882 KAAIDMMVFYFSTASIYVTALIGVLVLMCFDCP-WRRAWLRIVD 924
|
|
| TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 771 (276.5 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 247/797 (30%), Positives = 378/797 (47%)
Query: 3 DGSKVLQSIGSLPSLKTLYLSYTNFTGTV-------------VNQELHNFTNLEELILDK 49
+GS +Q + SL LK L LS F+G++ + + N++EL L +
Sbjct: 194 NGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQ 253
Query: 50 SDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHF 109
+ L V L S + S T L+ L + + G + ++LE+L + N+
Sbjct: 254 NKL-VGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYLSL------FDND-- 303
Query: 110 FQIPISLEPLFNLSKLKTFDGEIWAETES----HYNSVTPKFQLTSISLSGYIDGGTFPK 165
F+ S L NLS L ++ +++ S +S PKFQL+ I+L + P
Sbjct: 304 FEGSFSFGSLANLSNLMVL--KLCSKSSSLQVLSESSWKPKFQLSVIALRS-CNMEKVPH 360
Query: 166 FLYHQHDLKNADLSHLNLSGNFPXXXXXXXXXXXXXXXXXXXXFGSFRMPIHSYQKLAIL 225
FL HQ DL++ DLS N+SG P F SF++P S L L
Sbjct: 361 FLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNL-FTSFQIP-KSAHNLLFL 418
Query: 226 DVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEI 285
DVS N F P IG P L LN S+N F ++PSS +M ++ +D+S N G +
Sbjct: 419 DVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNL 478
Query: 286 PERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLA 345
P GC+ + IL LS+N L G IF + N TN++ L +D N FTG+I L + L
Sbjct: 479 PRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLE 538
Query: 346 GLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGT 405
L +S+N+L+G IP W+G L +L + +S+N L+G IP+ L +LDLS N++ G
Sbjct: 539 LLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGV 598
Query: 406 LPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSS 465
+P + L NK+ G + + + + LDL NRF G IP +INI +S
Sbjct: 599 IPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEI--LDLRNNRFSGKIPEFINI-QNISI 655
Query: 466 LLL-GNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIW 524
LLL GNN+ G+IP QLC L ++L+DLS+N L+G IP+CL TS G + +E TS
Sbjct: 656 LLLRGNNFT-GQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFG--FGKEC--TSYD 710
Query: 525 CDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EI 583
D + S +G + ++ + + KN Y++ + +D T E
Sbjct: 711 YDFGISFPSDVF---NGFSLHQDFS---SNKNGGIYFKSLLTLDPLSMDYKAATQTKIEF 764
Query: 584 PTQIGY-------LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636
T+ Y L + ++LS N L+G IP F L ++ +L+LS+N L G IP ++
Sbjct: 765 ATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSIS 824
Query: 637 VLNTLAVFKVAYNNLSGKIPDRVAQF---STFE--EDSYEG--------NPF----LCGW 679
+ + F +++N L G+IP ++ + S F+ ++ G N F G
Sbjct: 825 SMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGN 884
Query: 680 PLSKSCDDNGLTTVTT--EADTKNEEGDSLIDMDSFLITFTVSXXXXXXXXXXXXXXNPY 737
L N + EAD E +S+IDM SF ++F + +
Sbjct: 885 RLLCGQPTNRSCNNNSYEEADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSP 944
Query: 738 WRRRWFYLVEMAAKTNR 754
W R WFY V+ K R
Sbjct: 945 WSRFWFYKVDAFIKKVR 961
|
|
| TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 195/546 (35%), Positives = 271/546 (49%)
Query: 221 KLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD-MKMLERLDISYN 279
+L +L + N F ++ T + L L+ S N G P +F + L ++ S N
Sbjct: 368 ELEVLQLKNNSFT---IFQMPTSVHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNN 424
Query: 280 QLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF--NLTNLMRLQLDGNNFTGEISDS 337
G P M + + L LS NNL G + + F + +L LQL N F+G
Sbjct: 425 GFQGNFPSSMGE-MYNISFLDLSYNNLSGEL-PQSFVSSCFSLSILQLSHNKFSGHFLPR 482
Query: 338 LSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397
+N L L +++N +G+I L L L + MSNN LEG +P +YL LDL
Sbjct: 483 QTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDL 542
Query: 398 SNNAIFGTLPSCFSPAFIEQV-HLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNW 456
S N + G LPS S ++ V L N G + S + LDL N+ G+IP +
Sbjct: 543 SGNLLSGALPSHVS---LDNVLFLHNNNFTGPIPDTFLGS--IQILDLRNNKLSGNIPQF 597
Query: 457 INILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHE 516
++ +S LLL N + G IP LCE ++RL+DLS N L+G+IP+C S G E
Sbjct: 598 VDT-QDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKE 656
Query: 517 EGPPTSIWCDRASVY-G---SPCLPTQSGPPMGK--EETVQFTTKNMSYYYQGRI----- 565
E + S Y G S + E V+F TK Y G
Sbjct: 657 EITNYYVAVALESFYLGFYKSTFVVENFRLDYSNYFEIDVKFATKQRYDSYIGAFQFSEG 716
Query: 566 -LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L SM G+DLS N+L+G IP ++G L ++ ALNLSHN L+ IP +FS L+ IESLDLSY
Sbjct: 717 TLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSY 776
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKS 684
N+L G IP QLT L +LA+F V+YNNLSG IP QF+TF+E+SY GNP LCG P S
Sbjct: 777 NMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQG-KQFNTFDENSYLGNPLLCGPPTDTS 835
Query: 685 CDDNGLTTVTTEADTKN-EEGDSLIDMDSFLITFTVSXXXXXXXXXXXXXX--NPYWRRR 741
C+ T +E + EE D + +D + ++ + + WRR
Sbjct: 836 CE----TKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRA 891
Query: 742 WFYLVE 747
W LV+
Sbjct: 892 WLRLVD 897
|
|
| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 4.6e-61, Sum P(2) = 4.6e-61
Identities = 211/714 (29%), Positives = 342/714 (47%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
+++G+L +L+ L L+ TG + +Q L ++ LIL + L + + + + + L
Sbjct: 161 ETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQDNYLE-GPIPAELGNCSDLT 218
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDM------GWV--QL----------ILSNNHFF 110
+ +++ G + + + +NLE L++ G + QL +++N
Sbjct: 219 VFTAAENMLNGTIPAE-LGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQG 277
Query: 111 QIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQ 170
IP SL L NL L + E + +++ QL + L+ G+ PK +
Sbjct: 278 LIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMS---QLLDLVLANNHLSGSLPKSICSN 334
Query: 171 H-DLKNADLSHLNLSGNFPXXXXXXXXXXXXXXXXXXXXFGSFRMPIHSYQKLAILDVSK 229
+ +L+ LS LSG P GS + +L L +
Sbjct: 335 NTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLA-GSIPEALFELVELTDLYLHN 393
Query: 230 NFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERM 289
N +G + I L L L L N G +P + ++ LE L + N+ +GEIP+ +
Sbjct: 394 NTLEGTLSPSISN-LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEI 452
Query: 290 ATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYL 349
C L+++ + N+ +G I L L L L N G + SL NC L L L
Sbjct: 453 GN-CTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDL 511
Query: 350 SDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTL-PS 408
+DN LSG IP G L LE + + NN+L+G +P L LT ++LS+N + GT+ P
Sbjct: 512 ADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPL 571
Query: 409 CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLL 468
C S +++ ++ N E ++ + +S L L L N+ G IP + + +LS L +
Sbjct: 572 CGSSSYLS-FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDM 630
Query: 469 GNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTS-LGE-----DYHEEGPPTS 522
+N + G IP+QL K++ IDL++N LSG IP L S LGE + E PT
Sbjct: 631 SSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTE 690
Query: 523 IW-CDRA---SVYGSPC---LPTQSGPPMGKEETVQFTTKNMSYYYQGRI--LTSMSGID 573
++ C + S+ G+ +P + G +G + S + L+ + +
Sbjct: 691 LFNCTKLLVLSLDGNSLNGSIPQEIGN-LGALNVLNLDKNQFSGSLPQAMGKLSKLYELR 749
Query: 574 LSCNKLTGEIPTQIGYLTRIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632
LS N LTGEIP +IG L + AL+LS+NN TG IP+T L ++E+LDLS+N L G++P
Sbjct: 750 LSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP 809
Query: 633 SQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCD 686
+ + +L V++NNL GK+ QFS + DS+ GN LCG PLS+ C+
Sbjct: 810 GSVGDMKSLGYLNVSFNNLGGKLKK---QFSRWPADSFLGNTGLCGSPLSR-CN 859
|
|
| TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 2.7e-60, Sum P(2) = 2.7e-60
Identities = 212/703 (30%), Positives = 328/703 (46%)
Query: 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVS-QLLSSIAS 63
S V S+ SL L++L+LS ++ G+V + +L L L ++ L L+S+ S
Sbjct: 89 SAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSLGS 146
Query: 64 FTSLKYLSMQDSV--FKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFN 121
+ LK+L++ + F G + G K +LE LD+ I N + +S +
Sbjct: 147 CSGLKFLNVSSNTLDFPGKVSGG--LKLNSLEVLDLS-ANSISGANVVGWV-LS-DGCGE 201
Query: 122 LSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHL 181
L L +I + + S + +S + + G P FL L++ D+S
Sbjct: 202 LKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTG--IP-FLGDCSALQHLDISGN 255
Query: 182 NLSGNFPXXXXXXXXXXXXXXXXXXXXFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIG 241
LSG+F +P+ S Q L++ ++N F G IP +
Sbjct: 256 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL---AENKFTGEIPDFLS 312
Query: 242 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301
L L+LS N F G++P F +LE L +S N +GE+P L++L L
Sbjct: 313 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 372
Query: 302 SNNNLQGHIFSKKFNLT-NLMRLQLDGNNFTGEISDSL-SNCR-LLAGLYLSDNHLSGRI 358
S N G + NL+ +L+ L L NNF+G I +L N + L LYL +N +G+I
Sbjct: 373 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 432
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS-CFSPAFIEQ 417
P L N S L + +S N L G IP L L L L N + G +P +E
Sbjct: 433 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 492
Query: 418 VHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI 477
+ L N + G++ S + + L + LS NR G IP WI L L+ L L NN G I
Sbjct: 493 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 552
Query: 478 PVQLCELKEVRLIDLSHNNLSGYIPACLVYTS--LGEDYHEEGPPTSIWCD--RASVYGS 533
P +L + + + +DL+ N +G IPA + S + ++ I D + +G+
Sbjct: 553 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 612
Query: 534 PCLPTQSGPPMGKEETVQFTTKN----MSYYYQGRILT------SMSGIDLSCNKLTGEI 583
L G + E+ + +T+N S Y G SM +D+S N L+G I
Sbjct: 613 GNLLEFQG--IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 670
Query: 584 PTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAV 643
P +IG + + LNL HN+++G+IP +L+ + LDLS N L G+IP ++ L L
Sbjct: 671 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 730
Query: 644 FKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCD 686
++ NNLSG IP+ + QF TF + NP LCG+PL + CD
Sbjct: 731 IDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CD 771
|
|
| TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 3.4e-60, Sum P(2) = 3.4e-60
Identities = 211/698 (30%), Positives = 321/698 (45%)
Query: 12 GSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLS 71
G L L+TL L G + E+ N T+L + L+ S L + + +L+ L+
Sbjct: 189 GRLVQLQTLILQDNELEGPIP-AEIGNCTSLALFAAAFNRLNGS-LPAELNRLKNLQTLN 246
Query: 72 MQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGE 131
+ D+ F G + Q ++++L++ + N IP L L NL L
Sbjct: 247 LGDNSFSGEIPSQ-LGDLVSIQYLNL------IGNQLQGLIPKRLTELANLQTLDLSSNN 299
Query: 132 IWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQH-DLKNADLSHLNLSGNFPXX 190
+ + + QL + L+ G+ PK + + LK LS LSG P
Sbjct: 300 LTGVIHEEFWRMN---QLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAE 356
Query: 191 XXXXXXXXXXXXXXXXXXFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDL 250
G + +L L ++ N +G + I L L +
Sbjct: 357 ISNCQSLKLLDLSNNTLT-GQIPDSLFQLVELTNLYLNNNSLEGTLSSSISN-LTNLQEF 414
Query: 251 NLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310
L N G +P + LE + + N+ +GE+P + C L+ + N L G I
Sbjct: 415 TLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGN-CTRLQEIDWYGNRLSGEI 473
Query: 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALED 370
S L +L RL L N G I SL NC + + L+DN LSG IP G L+ALE
Sbjct: 474 PSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALEL 533
Query: 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTL-PSCFSPAFIEQVHLSKNKIEGQL 429
+ NN+L+G +P L LT ++ S+N G++ P C S +++ +++N EG +
Sbjct: 534 FMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLS-FDVTENGFEGDI 592
Query: 430 ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRL 489
+ S L L L N+F G IP + +LS L + N + G IPV+L K++
Sbjct: 593 PLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTH 652
Query: 490 IDLSHNNLSGYIPACL-VYTSLGE-----DYHEEGPPTSIWC---------DRASVYGSP 534
IDL++N LSG IP L LGE + PT I+ D S+ GS
Sbjct: 653 IDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGS- 711
Query: 535 CLPTQSGPPMGKEETVQFTTKNMSYYYQGRI--LTSMSGIDLSCNKLTGEIPTQIGYLTR 592
+P + G + + +S I L+ + + LS N LTGEIP +IG L
Sbjct: 712 -IPQEIGN-LQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQD 769
Query: 593 IH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL 651
+ AL+LS+NN TG IP+T S L ++ESLDLS+N L G++P Q+ + +L ++YNNL
Sbjct: 770 LQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNL 829
Query: 652 SGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNG 689
GK+ QFS ++ D++ GN LCG PLS C+ G
Sbjct: 830 EGKLKK---QFSRWQADAFVGNAGLCGSPLSH-CNRAG 863
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 773 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-62 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-56 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-54 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-51 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-46 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-38 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-31 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-29 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-16 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 9e-07 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 3e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-05 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 9e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 3e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 4e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.003 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 6e-62
Identities = 173/534 (32%), Positives = 250/534 (46%), Gaps = 28/534 (5%)
Query: 149 LTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSL 208
L++ LSG I F L+ +LS+ N +G+ P + NLETL L+NN L
Sbjct: 100 LSNNQLSGPIPDDIF----TTSSSLRYLNLSNNNFTGSIPRGSI---PNLETLDLSNNML 152
Query: 209 FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 268
G I S+ L +LD+ N G IP + L L L L+ N G IP M
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQM 211
Query: 269 KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 328
K L+ + + YN L+GEIP + G L L L NNL G I S NL NL L L N
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270
Query: 329 NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQ 388
+G I S+ + + L L LSDN LSG IP + L LE + + +NN G IP+
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330
Query: 389 LDYLTILDLSNNAIFGTLPSCFSPAF-IEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYN 447
L L +L L +N G +P + + LS N + G++ + S L L L N
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390
Query: 448 RFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVY 507
G IP + L + L +N GE+P + +L V +D+S+NNL G I
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI------ 444
Query: 508 TSLGEDYHEEGPPTSIW-CDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI- 565
+ P + R +G LP G + E + + S ++
Sbjct: 445 ----NSRKWDMPSLQMLSLARNKFFGG--LPDSFGSK--RLENLDLSRNQFSGAVPRKLG 496
Query: 566 -LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L+ + + LS NKL+GEIP ++ ++ +L+LSHN L+G IP +FS + + LDLS
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 678
N L G+IP L + +L +++N+L G +P A F + GN LCG
Sbjct: 557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA-FLAINASAVAGNIDLCG 609
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 1e-56
Identities = 162/519 (31%), Positives = 245/519 (47%), Gaps = 46/519 (8%)
Query: 148 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNS 207
++ SI LSG G ++ ++ +LS+ LSG P+ + +++L L L+NN+
Sbjct: 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129
Query: 208 LFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 267
GS +P S L LD+S N G IP +IG++ L L+L N G IP+S +
Sbjct: 130 FTGS--IPRGSIPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIPNSLTN 186
Query: 268 MKMLERLDISYNQLTGEIPE---RMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQ 324
+ LE L ++ NQL G+IP +M + L+ + L NNL G I + LT+L L
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKS----LKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242
Query: 325 LDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPI 384
L NN TG I SL N + L L+L N LSG IP + +L L + +S+N+L G IP
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302
Query: 385 EFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQV-HLSKNKIEGQLESIIHDSPYLVTLD 443
QL L IL L +N G +P + QV L NK G++ + L LD
Sbjct: 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362
Query: 444 LSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPA 503
LS N G IP + L L+L +N +EGEIP L + +R + L N+ SG +P+
Sbjct: 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422
Query: 504 CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQG 563
L VY L + G+ + ++
Sbjct: 423 EFTKLPL-------------------VY---FLDISNNNLQGRINSRKWD---------- 450
Query: 564 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623
+ S+ + L+ NK G +P G R+ L+LS N +G +P +L ++ L LS
Sbjct: 451 --MPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507
Query: 624 YNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQF 662
N L G+IP +L+ L +++N LSG+IP ++
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 5e-54
Identities = 160/495 (32%), Positives = 236/495 (47%), Gaps = 34/495 (6%)
Query: 178 LSHLNLSGNFPNW---LVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQG 234
LS+ N S + W N++ + ++ L+ ++ G I + +++S N G
Sbjct: 48 LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107
Query: 235 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF 294
IP +I T L LNLS N F GSIP LE LD+S N L+GEIP + G F
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDI--GSF 163
Query: 295 L-LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353
L++L L N L G I + NLT+L L L N G+I L + L +YL N+
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223
Query: 354 LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLP-SCFSP 412
LSG IP +G L++L + + NNL GPIP L L L L N + G +P S FS
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283
Query: 413 AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNY 472
+ + LS N + G++ ++ L L L N F G IP + LP+L L L +N
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343
Query: 473 IEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTS-------LGEDYHEEGPPTSIWC 525
GEIP L + + ++DLS NNL+G IP L + E P + C
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403
Query: 526 DRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT 585
+ Q G E +FT + Y+ +D+S N L G I +
Sbjct: 404 RSLRR-----VRLQDNSFSG-ELPSEFTKLPLVYF-----------LDISNNNLQGRINS 446
Query: 586 QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFK 645
+ + + L+L+ N G +P +F + K++E+LDLS N G +P +L L+ L K
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLK 505
Query: 646 VAYNNLSGKIPDRVA 660
++ N LSG+IPD ++
Sbjct: 506 LSENKLSGEIPDELS 520
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 9e-51
Identities = 163/491 (33%), Positives = 232/491 (47%), Gaps = 43/491 (8%)
Query: 16 SLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDS 75
SL+ L LS NFTG++ + NLE L L +++ ++ + I SF+SLK L + +
Sbjct: 119 SLRYLNLSNNNFTGSIPRGSI---PNLETLDL-SNNMLSGEIPNDIGSFSSLKVLDLGGN 174
Query: 76 VFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFF-QIPISLEPLFNLSKLKTFDGEIWA 134
V G + NL L+ L L++N QIP L + +L +
Sbjct: 175 VLVGKIPNS----LTNLTSLEF----LTLASNQLVGQIPRELGQMKSLKWIYL------- 219
Query: 135 ETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVEN 194
YN+ LSG I P + L + DL + NL+G P+ L N
Sbjct: 220 ----GYNN-----------LSGEI-----PYEIGGLTSLNHLDLVYNNLTGPIPSSL-GN 258
Query: 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254
NL+ L L N L G I S QKL LD+S N G IP E+ L L L+L
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFS 317
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKK 314
N F G IP + + L+ L + N+ +GEIP+ + L +L LS NNL G I
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL-TVLDLSTNNLTGEIPEGL 376
Query: 315 FNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374
+ NL +L L N+ GEI SL CR L + L DN SG +P L + + +S
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436
Query: 375 NNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIH 434
NNNL+G I + L +L L+ N FG LP F +E + LS+N+ G + +
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG 496
Query: 435 DSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSH 494
L+ L LS N+ G IP+ ++ +L SL L +N + G+IP E+ + +DLS
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556
Query: 495 NNLSGYIPACL 505
N LSG IP L
Sbjct: 557 NQLSGEIPKNL 567
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 2e-46
Identities = 151/492 (30%), Positives = 252/492 (51%), Gaps = 41/492 (8%)
Query: 12 GSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLS 71
GS+P+L+TL LS +G + N ++ +F++L+ L L + L V ++ +S+ + TSL++L+
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLT 194
Query: 72 MQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGE 131
+ + G + ++ + K+L+ + +G+ NN +IP + L +L+ L
Sbjct: 195 LASNQLVGQI-PRELGQMKSLKWIYLGY------NNLSGEIPYEIGGLTSLNHLDLV--- 244
Query: 132 IWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWL 191
YN++T G P L + +L+ L LSG P +
Sbjct: 245 --------YNNLT----------------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280
Query: 192 VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251
+ L +L L++NSL G + Q L IL + N F G IPV + T LP L L
Sbjct: 281 F-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQ 338
Query: 252 LSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIF 311
L N F+G IP + L LD+S N LTGEIPE + + L +++ SN+ L+G I
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS-LEGEIP 397
Query: 312 SKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDI 371
+L R++L N+F+GE+ + L+ L +S+N+L GRI ++ +L+ +
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457
Query: 372 RMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF-SPAFIEQVHLSKNKIEGQLE 430
++ N G +P + L LDLS N G +P S + + Q+ LS+NK+ G++
Sbjct: 458 SLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516
Query: 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLI 490
+ LV+LDLS+N+ G IP + +P LS L L N + GEIP L ++ + +
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576
Query: 491 DLSHNNLSGYIP 502
++SHN+L G +P
Sbjct: 577 NISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-38
Identities = 132/398 (33%), Positives = 190/398 (47%), Gaps = 40/398 (10%)
Query: 11 IGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYL 70
IG L SL L L Y N TG + L N NL+ L L ++ L + SI S L L
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKL-SGPIPPSIFSLQKLISL 289
Query: 71 SMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDG 130
+ D+ G + + + +NLE L + SNN +IP++L L L L
Sbjct: 290 DLSDNSLSGEI-PELVIQLQNLEILHL------FSNNFTGKIPVALTSLPRLQVL----- 337
Query: 131 EIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNW 190
QL S SG I PK L ++L DLS NL+G P
Sbjct: 338 -----------------QLWSNKFSGEI-----PKNLGKHNNLTVLDLSTNNLTGEIPEG 375
Query: 191 LVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDL 250
L ++ NL L+L +NSL G + + + L + + N F G +P E T LP + L
Sbjct: 376 LC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFL 433
Query: 251 NLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310
++S N G I S DM L+ L ++ N+ G +P+ + G LE L LS N G +
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAV 491
Query: 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALED 370
K +L+ LM+L+L N +GEI D LS+C+ L L LS N LSG+IP + L
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551
Query: 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
+ +S N L G IP ++ L +++S+N + G+LPS
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-31
Identities = 100/320 (31%), Positives = 144/320 (45%), Gaps = 44/320 (13%)
Query: 348 YLSDNHLSGRIPRWLG----NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403
YLS+ + S + W G N S + I +S N+ G I +L Y+ ++LSNN +
Sbjct: 47 YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106
Query: 404 GTLPS--CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILP 461
G +P + + + ++LS N G + P L TLDLS N G IPN I
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164
Query: 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPT 521
L L LG N + G+IP L L + + L+ N L G IP E G
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP------------RELGQMK 212
Query: 522 SI-WCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT 580
S+ W S +P + G LTS++ +DL N LT
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGG-----------------------LTSLNHLDLVYNNLT 249
Query: 581 GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNT 640
G IP+ +G L + L L N L+G IP + +L+++ SLDLS N L G+IP + L
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309
Query: 641 LAVFKVAYNNLSGKIPDRVA 660
L + + NN +GKIP +
Sbjct: 310 LEILHLFSNNFTGKIPVALT 329
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 8e-29
Identities = 109/385 (28%), Positives = 163/385 (42%), Gaps = 50/385 (12%)
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSN-CRLLAGLYLSDNHLSGR 357
+ LS N+ G I S F L + + L N +G I D + L L LS+N+ +G
Sbjct: 74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133
Query: 358 IPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLP-SCFSPAFIE 416
IPR G++ LE + +SNN L G IP + L +LDL N + G +P S + +E
Sbjct: 134 IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191
Query: 417 QVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGE 476
+ L+ N++ GQ+ + L + L YN G IP I L L+ L L N + G
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251
Query: 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCL 536
IP L LK ++ + L N LSG IP S++
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPP-------------------------SIFS---- 282
Query: 537 PTQSGPPMGKEETVQFTTKNMSYYYQGRI------LTSMSGIDLSCNKLTGEIPTQIGYL 590
+ K ++ + ++S G I L ++ + L N TG+IP + L
Sbjct: 283 -------LQKLISLDLSDNSLS----GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331
Query: 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNN 650
R+ L L N +G IP + LDLS N L G+IP L L + N+
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391
Query: 651 LSGKIPDRVAQFSTFEEDSYEGNPF 675
L G+IP + + + N F
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSF 416
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 8e-16
Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 40/214 (18%)
Query: 532 GSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLT 591
G PC+P Q P G + QF + ++ + G+ L L G IP I L
Sbjct: 394 GDPCVPQQH-PWSGAD--CQFDSTKGKWF--------IDGLGLDNQGLRGFIPNDISKLR 442
Query: 592 RIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL 651
+ ++NLS N++ G IP + ++ +E LDLSYN +G IP L L +L + + N+L
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
Query: 652 SGKIP----DRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADTKNEEGDSL 707
SG++P R+ ++F ++ N LCG P ++C G L
Sbjct: 503 SGRVPAALGGRLLHRASF---NFTDNAGLCGIPGLRAC------------------GPHL 541
Query: 708 IDMDSFLITFTVSYGIVILGIIGVLYVNPYWRRR 741
I F VS + L I + +W+RR
Sbjct: 542 SVGAKIGIAFGVSVAFLFLVICAMC----WWKRR 571
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-13
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 572 IDLSCNKLTGEIPTQIGYLT-RIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630
I+LS N+L+G IP I + + LNLS+NN TG+IP + +E+LDLS N+L G+
Sbjct: 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGE 155
Query: 631 IPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680
IP+ + ++L V + N L GKIP+ + ++ E + N + P
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 5e-11
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 170 QHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSK 229
QH AD + G W ++ L L N L G I + L +++S
Sbjct: 401 QHPWSGADCQFDSTKGK---WFIDG------LGLDNQGLRGFIPNDISKLRHLQSINLSG 451
Query: 230 NFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIP 286
N +G+IP +G+ + L L+LS N+FNGSIP S + L L+++ N L+G +P
Sbjct: 452 NSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 323 LQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPI 382
L LD G I + +S R L + LS N + G IP LG++++LE + +S N+ G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 383 PIEFCQLDYLTILDLSNNAIFGTLPS 408
P QL L IL+L+ N++ G +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 39/146 (26%), Positives = 52/146 (35%), Gaps = 47/146 (32%)
Query: 336 DSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTIL 395
DS + GL L + L G IP + L L+ I +S N++ G IP
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS---------- 461
Query: 396 DLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPN 455
G++ S L LDLSYN F+GSIP
Sbjct: 462 -------LGSITS------------------------------LEVLDLSYNSFNGSIPE 484
Query: 456 WINILPQLSSLLLGNNYIEGEIPVQL 481
+ L L L L N + G +P L
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 414 FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYI 473
FI+ + L + G + + I +L +++LS N G+IP + + L L L N
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 474 EGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
G IP L +L +R+++L+ N+LSG +PA L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 225 LDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGE 284
L + +G IP +I + L L +NLS N+ G+IP S + LE LD+SYN G
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 285 IPERMATGCFLLEILALSNNNLQGHI 310
IPE + L IL L+ N+L G +
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-08
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 291 TGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLS 350
G + ++ L L N L+G I + L +L + L GN+ G I SL + L L LS
Sbjct: 415 KGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474
Query: 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP 383
N +G IP LG L++L + ++ N+L G +P
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 9e-07
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 5/183 (2%)
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
NL L L L+ N IS+ L L L L +N+++ IP +G L + +
Sbjct: 91 NLLPLPSLDLNLNRLRSNISELLEL-TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLS 148
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHD 435
+N +P L L LDLS N + + + + + LS NKI L I
Sbjct: 149 DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL 207
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495
L LDLS N + + ++ L LS L L NN +E ++P + L + +DLS+N
Sbjct: 208 LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265
Query: 496 NLS 498
+S
Sbjct: 266 QIS 268
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-06
Identities = 25/56 (44%), Positives = 30/56 (53%)
Query: 572 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627
+DLS N+LT L + L+LS NNLT P FS L + SLDLS N L
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 177 DLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHI 236
L + L G PN + +L+++ L+ NS+ G+ + S L +LD+S N F G I
Sbjct: 424 GLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 237 PVEIGTYLPGLMDLNLSRNAFNGSIPSS 264
P +G L L LNL+ N+ +G +P++
Sbjct: 483 PESLGQ-LTSLRILNLNGNSLSGRVPAA 509
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 58/266 (21%), Positives = 91/266 (34%), Gaps = 54/266 (20%)
Query: 216 IHSYQKLAILDVSKNFFQG-----HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 270
+ L L +S N ++ T GL +L+LS NA +
Sbjct: 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL------GPDGCGV 100
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIF-----SKKFNLTNLMRLQL 325
LE L L+ L L+NN L K L +L L
Sbjct: 101 LESL----------------LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144
Query: 326 DGNNFTGEISDSLSN----CRLLAGLYLSDNHLSGR----IPRWLGNLSALEDIRMSNNN 377
N G ++L+ R L L L++N + + L LE + ++NN
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204
Query: 378 L--EGPIPIEFC--QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVH------LSKNKIE- 426
L EG + L L +L+L +N + + + A + LS N I
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264
Query: 427 ---GQLESIIHDSPYLVTLDLSYNRF 449
L ++ + L+ LDL N+F
Sbjct: 265 DGAKDLAEVLAEKESLLELDLRGNKF 290
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378
NL L L N T + L L LS N+L+ P L +L + +S NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 221 KLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQ 280
L LD+S N IP LP L L+LS N P +F+ + L LD+S N
Sbjct: 1 NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 281 L 281
L
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 3e-04
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNN 305
L L+LS N +F + L+ LD+S N LT I +G L L LS NN
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59
Query: 306 L 306
L
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 45/225 (20%)
Query: 261 IPSSFADMKMLERLDISYNQLTGEIPERM-ATGCFL-----LEILALSNNNLQG---HIF 311
+ S+ L+ L +S N+ TG IP + + L L+ L LS+N L +
Sbjct: 43 LASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101
Query: 312 SKKFNLTNLMRLQLDGNNFTGE----ISDSLSNCRL-LAGLYLSDNHLSGRIPRWLGNL- 365
++L L+L+ N ++ L + L L L N L G L
Sbjct: 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161
Query: 366 ---SALEDIRMSNNNLEGP-IPI------EFCQLDYLTILDLSNN--------AIFGTLP 407
L+++ ++NN + I C L+ +LDL+NN A+ TL
Sbjct: 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLE---VLDLNNNGLTDEGASALAETLA 218
Query: 408 SCFSPAFIEQVHLSKNKIEGQ-----LESIIHDSPYLVTLDLSYN 447
S +E ++L N + +++ + L+TL LS N
Sbjct: 219 S---LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.001
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402
L LS+N L+ L L+ + +S NNL P F L L LDLS N +
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLV 192
W+ + ++S K+ + + L G P + L++ +LS ++ GN P L
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL- 462
Query: 193 ENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNL 252
+ T+LE L L+ NS GS + L IL+++ N G +P +G L N
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522
Query: 253 SRNAFNGSIP 262
+ NA IP
Sbjct: 523 TDNAGLCGIP 532
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.003
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 296 LEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354
L+ L LSNN L I F L NL L L GNN T ++ S L L LS N+L
Sbjct: 2 LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.003
Identities = 22/59 (37%), Positives = 26/59 (44%)
Query: 439 LVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNL 497
L +LDLS NR LP L L L N + P L +R +DLS NNL
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.79 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.78 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.74 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.65 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.64 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.63 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.23 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.2 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.19 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.17 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.13 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.09 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.05 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.05 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.05 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.02 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.01 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.98 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.89 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.84 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.83 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.8 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.76 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.74 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.74 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.63 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.46 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.41 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.29 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.23 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.1 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.0 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.95 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.92 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.92 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.78 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.77 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.75 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.71 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.68 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.67 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.59 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.57 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.48 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.46 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.99 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.89 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.76 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.3 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.6 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.26 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.26 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.19 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.15 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.17 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.38 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.38 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 91.23 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 90.38 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 90.25 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.8 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.8 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 89.25 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 88.98 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 84.83 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 81.95 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 81.32 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-64 Score=603.90 Aligned_cols=543 Identities=32% Similarity=0.470 Sum_probs=493.5
Q ss_pred CCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeCcchhhccCCCcccccccCccc
Q 040297 39 FTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEP 118 (773)
Q Consensus 39 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~ 118 (773)
..+++.|||++|.+.+. ++..+..+++|++|++++|.+.+.+|...+..+++|++|+++ + |.+.+.++..
T Consensus 68 ~~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls-------~-n~l~~~~p~~- 137 (968)
T PLN00113 68 SSRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS-------N-NNFTGSIPRG- 137 (968)
T ss_pred CCcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECc-------C-CccccccCcc-
Confidence 45788999999988887 788889999999999999999888887566689999999987 6 4444444321
Q ss_pred ccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCC
Q 040297 119 LFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNL 198 (773)
Q Consensus 119 l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L 198 (773)
.+ .+|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+ .++++|
T Consensus 138 --~l------------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L 190 (968)
T PLN00113 138 --SI------------------------PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSL 190 (968)
T ss_pred --cc------------------------CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCC
Confidence 11 167788888888888899999999999999999999998888875 789999
Q ss_pred CEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeec
Q 040297 199 ETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISY 278 (773)
Q Consensus 199 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 278 (773)
++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence 99999999999999999999999999999999999888888765 88999999999999999999999999999999999
Q ss_pred ccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCc
Q 040297 279 NQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRI 358 (773)
Q Consensus 279 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 358 (773)
|.+++.+|..+.. +++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+
T Consensus 270 n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 270 NKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CeeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 9999888887754 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCC
Q 040297 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSP 437 (773)
Q Consensus 359 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~ 437 (773)
|..++.+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..+. +++|+.|++++|.+++..|..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 99999999999999999999999999999999999999999999988887654 78999999999999999999999999
Q ss_pred CeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCC
Q 040297 438 YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE 517 (773)
Q Consensus 438 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~ 517 (773)
+|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+..
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~---------- 497 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS---------- 497 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh----------
Confidence 99999999999999999988999999999999999998888765 5689999999999999988876654
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEe
Q 040297 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 597 (773)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (773)
+++|+.|+|++|++++.+|..++.+++|++|+
T Consensus 498 ------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 498 ------------------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred ------------------------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 34899999999999999999999999999999
Q ss_pred CCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCC
Q 040297 598 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 598 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
|++|.+++.+|..|+++++|+.|||++|++++.+|..+..+++|+.|++++|+++|.+|.. +++.++...++.|||++|
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLC 608 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999985 788999999999999999
Q ss_pred CCC
Q 040297 678 GWP 680 (773)
Q Consensus 678 ~~~ 680 (773)
+.+
T Consensus 609 ~~~ 611 (968)
T PLN00113 609 GGD 611 (968)
T ss_pred CCc
Confidence 753
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-59 Score=562.59 Aligned_cols=521 Identities=28% Similarity=0.462 Sum_probs=476.5
Q ss_pred CCCCcEEECCCcccccccChhhhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCC
Q 040297 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSV 143 (773)
Q Consensus 64 l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~ 143 (773)
..+++.|++++|.+.+.++. .|..+++|++|+|+ + |.+.+.++...+.+++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls-------~-n~~~~~ip~~~~~~l~-------------------- 118 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLS-------N-NQLSGPIPDDIFTTSS-------------------- 118 (968)
T ss_pred CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECC-------C-CccCCcCChHHhccCC--------------------
Confidence 35799999999999988876 89999999999998 6 4555555533333333
Q ss_pred CCCccccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcC
Q 040297 144 TPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLA 223 (773)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 223 (773)
+|++|++++|.+.+.+|. +.+++|++|++++|.+.+.+|..+ +++++|++|++++|.+.+..|..+..+++|+
T Consensus 119 ----~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 119 ----SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred ----CCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 667777778888777775 457899999999999998888875 7899999999999999999999999999999
Q ss_pred EEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEccc
Q 040297 224 ILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303 (773)
Q Consensus 224 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 303 (773)
+|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..+. .+++|+.|++++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~ 269 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQ 269 (968)
T ss_pred eeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcC
Confidence 9999999999888988765 88999999999999999999999999999999999999988887765 599999999999
Q ss_pred CcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCcc
Q 040297 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP 383 (773)
Q Consensus 304 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 383 (773)
|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCC
Q 040297 384 IEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQ 462 (773)
Q Consensus 384 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 462 (773)
..+..+++|+.|++++|.+.+.+|..+. .+.++.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 429 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC
Confidence 9999999999999999999988887654 788999999999999999999999999999999999999999999999999
Q ss_pred CcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCC
Q 040297 463 LSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGP 542 (773)
Q Consensus 463 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (773)
|+.|++++|.+++.++..+..+++|+.|++++|++.+.+|..+.
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------------------------------------ 473 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------------------------------------ 473 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc------------------------------------
Confidence 99999999999999999999999999999999999987775432
Q ss_pred CCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeC
Q 040297 543 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL 622 (773)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL 622 (773)
.++|+.||+++|++++.+|..+..+++|+.|+|++|.+++.+|+.++++++|++|+|
T Consensus 474 -----------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 474 -----------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred -----------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 247899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 623 SYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 623 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
++|++++.+|..+..+++|+.|++++|+++|.+|..+..+++++.+++++|++.+..|.
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 99999999999999999999999999999999999999999999999999999886653
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=346.74 Aligned_cols=377 Identities=22% Similarity=0.244 Sum_probs=278.5
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEc
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQL 325 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 325 (773)
.-+.|++++|.+....+..|.++++|+++++..|.++ .||.... ....++.|+|.+|.|+.+..+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 3445666666666555566666666666666666665 5654332 2344666666666666655555666666666666
Q ss_pred ccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCC
Q 040297 326 DGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGT 405 (773)
Q Consensus 326 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 405 (773)
+.|.|+.+....|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|.+++.|+.|+|..|+|.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 66666544334455445566666666666655555666666666666666666655555566666666666666666433
Q ss_pred CCCCC-CCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCC
Q 040297 406 LPSCF-SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCEL 484 (773)
Q Consensus 406 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 484 (773)
--..| .+++|+.|.+..|.+......+|.++.++++|+|+.|++...-..|+.+++.|+.|++++|.|..+-+.+....
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 22222 25666667777777777777788888889999999999887777888889999999999999988888888888
Q ss_pred CCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccccc
Q 040297 485 KEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGR 564 (773)
Q Consensus 485 ~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (773)
++|++|+|+.|+++..-+..|..
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~--------------------------------------------------------- 339 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRV--------------------------------------------------------- 339 (873)
T ss_pred ccceeEeccccccccCChhHHHH---------------------------------------------------------
Confidence 99999999999988555554443
Q ss_pred ccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCcc---ccccCccCCeeeCccccCcccCCcccccCCCC
Q 040297 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT---TFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641 (773)
Q Consensus 565 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 641 (773)
+..|++|.|++|+++......|..+++|++|||++|.|++.+.+ .|.+|++|+.|++.+|++..+....|..+..|
T Consensus 340 -L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 340 -LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred -HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 45888999999999977777899999999999999999887764 48889999999999999998778899999999
Q ss_pred CEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCCC
Q 040297 642 AVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSK 683 (773)
Q Consensus 642 ~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~~ 683 (773)
+.|||.+|.+...-|.+|.++ .|+++.+..-.++|+|.+.|
T Consensus 419 E~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred ceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 999999999999999999888 89999988888999998754
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=322.95 Aligned_cols=370 Identities=23% Similarity=0.243 Sum_probs=284.8
Q ss_pred CCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEe
Q 040297 197 NLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI 276 (773)
Q Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 276 (773)
.-+.|++++|++....+..|.++++|+.+.+.+|.++ .||..... ..+|+.|+|.+|.|+....+++..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 4577888888888887777888888888888888888 77765443 557888888888888777788888888888888
Q ss_pred ecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCC
Q 040297 277 SYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG 356 (773)
Q Consensus 277 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 356 (773)
|.|.|+ ++|...|..-.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|..+++|+.|+|..|+|.-
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 888888 7877666555678888888888888777788888888888888888886656677778888888888888874
Q ss_pred CcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCC-CCCCceeEEECCCccccccchhhhcC
Q 040297 357 RIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSC-FSPAFIEQVHLSKNKIEGQLESIIHD 435 (773)
Q Consensus 357 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~ 435 (773)
.--..|.++++|+.|.|..|.+.......|..+.+++.|+|+.|++...-.++ +.++.|+.|++++|.|..+-++.+.-
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 44557788888888888888887766777888888888888888887655543 45788888888888888877777777
Q ss_pred CCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCcccc
Q 040297 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYH 515 (773)
Q Consensus 436 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~ 515 (773)
+++|++|+|++|+|+...+..|..+..|++|+|++|+++..-..+|..+++|+.|||++|.+++.+.+.-.
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~--------- 386 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV--------- 386 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh---------
Confidence 88888888888888877777788888888888888888766666777888888888888887755443111
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCe
Q 040297 516 EEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHA 595 (773)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 595 (773)
.| ..+++|+.|+|.+|++....-.+|.++.+|+.
T Consensus 387 --------------------------------------------~f--~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 387 --------------------------------------------AF--NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred --------------------------------------------hh--ccchhhhheeecCceeeecchhhhccCcccce
Confidence 11 12567777888888887444466777888888
Q ss_pred EeCCCCcCCCCCccccccCccCCeeeCccc
Q 040297 596 LNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625 (773)
Q Consensus 596 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 625 (773)
|||.+|.|..+.|+.|..+ .|++|.+..-
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhccc
Confidence 8888888877777777777 7777766543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=329.66 Aligned_cols=488 Identities=24% Similarity=0.342 Sum_probs=279.1
Q ss_pred CCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEE
Q 040297 16 SLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHL 95 (773)
Q Consensus 16 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L 95 (773)
.++.|++++|.+. .+. .++.++..|.+|++++|++.. +|++++.+.+++.++.++|.+. ++|. .+..+.+|.+|
T Consensus 46 ~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l 119 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKL 119 (565)
T ss_pred chhhhhhccCchh-hcc-HhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhh
Confidence 3455555555554 443 255555555555555555543 4555555555555555555555 4554 45555555555
Q ss_pred eCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCE
Q 040297 96 DMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKN 175 (773)
Q Consensus 96 ~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 175 (773)
+.+ +|. + .++|+.++.+..++.
T Consensus 120 ~~s-------~n~--------------------------------------------------~-~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 120 DCS-------SNE--------------------------------------------------L-KELPDSIGRLLDLED 141 (565)
T ss_pred hcc-------ccc--------------------------------------------------e-eecCchHHHHhhhhh
Confidence 544 311 1 123344555555666
Q ss_pred EECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCC
Q 040297 176 ADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255 (773)
Q Consensus 176 L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 255 (773)
++..+|+++ ..|+.+ .++.++..+++.+|++....|..+. ++.|++||...|-++ .+|+.++. +.+|+.|++..|
T Consensus 142 l~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~N 216 (565)
T KOG0472|consen 142 LDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRN 216 (565)
T ss_pred hhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhc
Confidence 666666665 444443 3555666666666666544433333 556666666666555 56665554 556666666666
Q ss_pred ccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCcccc
Q 040297 256 AFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEIS 335 (773)
Q Consensus 256 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 335 (773)
++. ..| .|.+|..|++++++.|++. .+|+.....++++..||+..|+++. .|+.+.-+.+|.+||+++|.++ ..|
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp 291 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLP 291 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCC
Confidence 665 344 4666666666666666665 5666555555555555555555553 2344444555555555555555 345
Q ss_pred ccccCCCCCCeeeCcCCcCCCCcchhhcCCCC---CcEEE--cccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCC
Q 040297 336 DSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSA---LEDIR--MSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF 410 (773)
Q Consensus 336 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 410 (773)
..++++ .|+.|-+.+|.+... -..+-+... |++|. +..-.++.. ..=+.=+ .....+..|+..
T Consensus 292 ~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~s--------e~~~e~~--~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQS--------EGGTETA--MTLPSESFPDIY 359 (565)
T ss_pred cccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCC--------ccccccc--CCCCCCcccchh
Confidence 555555 555555555555421 111111110 11110 000000000 0000000 000112233333
Q ss_pred CCCceeEEECCCccccccchhhhcCCC--CeeEEeCCCCccccccchhhhcCCCCcEE-EccCccccccCcccccCCCCC
Q 040297 411 SPAFIEQVHLSKNKIEGQLESIIHDSP--YLVTLDLSYNRFHGSIPNWINILPQLSSL-LLGNNYIEGEIPVQLCELKEV 487 (773)
Q Consensus 411 ~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L 487 (773)
...+.+.|++++-+++.++..+|..-. -.+..+++.|++. .+|..+..+..+.+. .+++|.+ +.+|..++.+++|
T Consensus 360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kL 437 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKL 437 (565)
T ss_pred hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcc
Confidence 355677777777777777666665432 3678888888887 677766666555443 4444444 4677778888888
Q ss_pred CEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccc
Q 040297 488 RLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILT 567 (773)
Q Consensus 488 ~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 567 (773)
..|++++|.+. .+|..++.+ .
T Consensus 438 t~L~L~NN~Ln-~LP~e~~~l----------------------------------------------------------v 458 (565)
T KOG0472|consen 438 TFLDLSNNLLN-DLPEEMGSL----------------------------------------------------------V 458 (565)
T ss_pred eeeecccchhh-hcchhhhhh----------------------------------------------------------h
Confidence 88888877664 566555432 2
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
.|+.||+|.|++. .+|..+..+..++.+-.++|++....|+.++++.+|..|||.+|.+. .+|..++++++|+.|+++
T Consensus 459 ~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 459 RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELD 536 (565)
T ss_pred hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEec
Confidence 5777888888877 77777777777777777778887666666888888888888888877 677778888888888888
Q ss_pred CCccc
Q 040297 648 YNNLS 652 (773)
Q Consensus 648 ~N~l~ 652 (773)
+|++.
T Consensus 537 gNpfr 541 (565)
T KOG0472|consen 537 GNPFR 541 (565)
T ss_pred CCccC
Confidence 88877
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=324.73 Aligned_cols=480 Identities=25% Similarity=0.323 Sum_probs=360.1
Q ss_pred CCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCC
Q 040297 142 SVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQK 221 (773)
Q Consensus 142 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 221 (773)
.|.....+..+.+++|.+.. +.+.+.++..+.++++++|+++ ..|+++ +.+..++.++.++|++. .+|....++.+
T Consensus 40 ~wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls-~lp~~i~s~~~ 115 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLS-ELPEQIGSLIS 115 (565)
T ss_pred hhhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHh-hccHHHhhhhh
Confidence 34444467788888887654 3445778888999999999998 667665 67889999999999985 56778888999
Q ss_pred cCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEc
Q 040297 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301 (773)
Q Consensus 222 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 301 (773)
++.+++++|.+. ++|++++. +..++.++..+|+++ ..|..+.++.+|..+++.+|+++ ..|+.... +..|++||.
T Consensus 116 l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~ 190 (565)
T KOG0472|consen 116 LVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDC 190 (565)
T ss_pred hhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhccc
Confidence 999999999998 88888887 568999999999998 67888999999999999999998 77777665 889999999
Q ss_pred ccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhc-CCCCCcEEEcccCcCCC
Q 040297 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG-NLSALEDIRMSNNNLEG 380 (773)
Q Consensus 302 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 380 (773)
.+|.++. +|+.++.+.+|..|++..|++. .+| .|.+|..|+.++++.|.+. .+|.... +++++..||+.+|++.
T Consensus 191 ~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 191 NSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred chhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-
Confidence 9998874 5677899999999999999998 677 6899999999999999998 5565554 8999999999999998
Q ss_pred CccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCC-----CCeeE----EeCCCCcc--
Q 040297 381 PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS-----PYLVT----LDLSYNRF-- 449 (773)
Q Consensus 381 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~----L~Ls~n~l-- 449 (773)
+.|+.++-+.+|..||+++|.+++..+....+ .|+.|.+.+|.+..+-.+.+.+- +.|+. =.++...-
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 78999999999999999999999877766666 88999999998754322222110 00110 00111100
Q ss_pred -c-cccch----hhhcCCCCcEEEccCccccccCcccccCCCC---CCEEEccCCcCCCcCcchhhccCcCccc-cCCCC
Q 040297 450 -H-GSIPN----WINILPQLSSLLLGNNYIEGEIPVQLCELKE---VRLIDLSHNNLSGYIPACLVYTSLGEDY-HEEGP 519 (773)
Q Consensus 450 -~-~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~~~p~~~~~~~~~~~~-~~~~~ 519 (773)
+ ...+. ......+.+.|++++-+++ .+|.....-.. ...++++.|++. ++|..+....-.... .....
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcC
Confidence 0 00010 1122445666666666666 34443332222 556666777664 555544332200000 00000
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCC
Q 040297 520 PTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLS 599 (773)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 599 (773)
. ..+. -..-+.++.|+.|+|++|-+. .+|.+++.+..|+.||+|
T Consensus 423 ~-----------------------------isfv------~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 423 K-----------------------------ISFV------PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLS 466 (565)
T ss_pred c-----------------------------cccc------hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccc
Confidence 0 0000 000022568999999999998 799999999999999999
Q ss_pred CCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCC
Q 040297 600 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL 676 (773)
Q Consensus 600 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~l 676 (773)
+|++. .+|.+...+..||.+-.++|++....|+.+.++.+|..||+.+|.+.. ||..++.+++++.+.+.|||+-
T Consensus 467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 99999 899999999999999999999998888889999999999999999985 4555899999999999999986
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=317.85 Aligned_cols=311 Identities=22% Similarity=0.279 Sum_probs=165.6
Q ss_pred ccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhh
Q 040297 7 VLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDF 86 (773)
Q Consensus 7 l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~ 86 (773)
||..+..-.+++.|++..|.+- ..|-+.+.+.-+|+.||+|+|.+.. .|..+..+.+|+.|+++.|.+. .+|. ..
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~-s~ 87 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPS-SC 87 (1081)
T ss_pred cchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCch-hh
Confidence 4444444444555555555443 3332334444445555555555543 3455555555555555555554 4443 44
Q ss_pred cCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChh
Q 040297 87 RKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKF 166 (773)
Q Consensus 87 ~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 166 (773)
.++.+|++|.|. + | .....|..
T Consensus 88 ~~~~~l~~lnL~-------~--------------------------------------------------n-~l~~lP~~ 109 (1081)
T KOG0618|consen 88 SNMRNLQYLNLK-------N--------------------------------------------------N-RLQSLPAS 109 (1081)
T ss_pred hhhhcchhheec-------c--------------------------------------------------c-hhhcCchh
Confidence 555555555544 2 1 11234555
Q ss_pred hcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCC
Q 040297 167 LYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPG 246 (773)
Q Consensus 167 l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 246 (773)
+..+.+|+.|+++.|++. .+|.-+ ..+..++.+..++|..... ++... ++.+++..|.+.+.++.++.. +.+
T Consensus 110 ~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~-l~~ 181 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYN-LTH 181 (1081)
T ss_pred HHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhh-hhe
Confidence 566666666666666664 455443 4566666666666621111 11111 555666666665555555443 222
Q ss_pred CcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcc
Q 040297 247 LMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLD 326 (773)
Q Consensus 247 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 326 (773)
.|+|.+|.+. ...+.++++|+.|....|++. .+.. .-++|+.|+.++|.++...+. ....+|++++++
T Consensus 182 --~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis 249 (1081)
T KOG0618|consen 182 --QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDIS 249 (1081)
T ss_pred --eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceeeccc--cccccceeeecc
Confidence 4666666654 123555666666666666665 3321 235566666666666533222 123456666666
Q ss_pred cccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 327 GNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 327 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
.|+++ .+|+++..+.+|+.++...|++. .+|..+....+|+.|++..|.+. .+|....+...|++|+|..|.+.
T Consensus 250 ~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 250 HNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred hhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc
Confidence 66666 44566666666666666666664 55555666666666666666665 34445555666666666666654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=315.78 Aligned_cols=504 Identities=22% Similarity=0.281 Sum_probs=381.8
Q ss_pred EEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeCc
Q 040297 19 TLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMG 98 (773)
Q Consensus 19 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls 98 (773)
.+|.+...+. .|| ..+..-..++.|+++.|-+.... -+.+...-+|+.||+++|++. ..|. .+..++.|+.|+++
T Consensus 2 ~vd~s~~~l~-~ip-~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s 76 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIP-EQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLS 76 (1081)
T ss_pred CcccccccCc-ccc-hhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccc
Confidence 3566777666 666 35555555777777777654421 122333445777777777665 4454 55556666666655
Q ss_pred chhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEEC
Q 040297 99 WVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADL 178 (773)
Q Consensus 99 ~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 178 (773)
. |.+ ...|....++.+|+++.|
T Consensus 77 -------~--------------------------------------------------n~i-~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 77 -------R--------------------------------------------------NYI-RSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred -------h--------------------------------------------------hhH-hhCchhhhhhhcchhhee
Confidence 3 211 124456778888999999
Q ss_pred CCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccC
Q 040297 179 SHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFN 258 (773)
Q Consensus 179 ~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 258 (773)
..|.+. ..|..+ ..+.+|++|+++.|.+ +.+|..+..+..+..++.++|.....++ . ..++.+++..|.+.
T Consensus 99 ~~n~l~-~lP~~~-~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~--~~ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASI-SELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLG----Q--TSIKKLDLRLNVLG 169 (1081)
T ss_pred ccchhh-cCchhH-Hhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhc----c--ccchhhhhhhhhcc
Confidence 988876 788875 7899999999999998 5678888889999999999992221222 2 24888999999999
Q ss_pred ccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccc
Q 040297 259 GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSL 338 (773)
Q Consensus 259 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 338 (773)
+.++..+..+.. .|||++|.+. ... ...+.+|+.|....|+++...- .-++|+.|+.++|.++...+..
T Consensus 170 ~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~p- 238 (1081)
T KOG0618|consen 170 GSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVHP- 238 (1081)
T ss_pred cchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecccc-
Confidence 888888888777 7999999886 332 2348899999999999875432 3578999999999998444432
Q ss_pred cCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEE
Q 040297 339 SNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQV 418 (773)
Q Consensus 339 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 418 (773)
.-.+|++++++.|+++ .+|.+++.+.+|+.++..+|++. .+|..+....+|+.|.+..|.+....|..-....|+.|
T Consensus 239 -~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 -VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred -ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeee
Confidence 2368999999999999 56799999999999999999995 78888889999999999999998666655558899999
Q ss_pred ECCCccccccchhhhcCCCC-eeEEeCCCCccccccch-hhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCc
Q 040297 419 HLSKNKIEGQLESIIHDSPY-LVTLDLSYNRFHGSIPN-WINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNN 496 (773)
Q Consensus 419 ~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 496 (773)
++..|++...++..+..... |..|+.+.|++.. .|. .=...+.|+.|++.+|.++...-+.+.++++|+.|+|++|+
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 99999998877766666554 8888889898874 342 11236789999999999998888889999999999999999
Q ss_pred CCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEeccc
Q 040297 497 LSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSC 576 (773)
Q Consensus 497 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 576 (773)
+. .+|+... ..+..|++|+||+
T Consensus 395 L~-~fpas~~---------------------------------------------------------~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 395 LN-SFPASKL---------------------------------------------------------RKLEELEELNLSG 416 (1081)
T ss_pred cc-cCCHHHH---------------------------------------------------------hchHHhHHHhccc
Confidence 96 4554322 1245899999999
Q ss_pred CcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCC
Q 040297 577 NKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 577 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
|+++ .+|+.+..+..|++|...+|+|. ..| .+.++++|+.+|+|.|+++...-..-..-++|++||+++|.-.....
T Consensus 417 NkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~ 493 (1081)
T KOG0618|consen 417 NKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDH 493 (1081)
T ss_pred chhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccch
Confidence 9999 89999999999999999999999 778 78999999999999999986443332233899999999997433444
Q ss_pred CCCcccccCCcCcc
Q 040297 657 DRVAQFSTFEEDSY 670 (773)
Q Consensus 657 ~~~~~~~~l~~~~l 670 (773)
+.+..+..+...++
T Consensus 494 ~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 494 KTLKVLKSLSQMDI 507 (1081)
T ss_pred hhhHHhhhhhheec
Confidence 44444444444333
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-33 Score=288.00 Aligned_cols=383 Identities=25% Similarity=0.337 Sum_probs=233.0
Q ss_pred ccEEEccCCCCC-CCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEc
Q 040297 149 LTSISLSGYIDG-GTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227 (773)
Q Consensus 149 L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 227 (773)
.+-.++++|.++ +.+|.....++.++.|.|....+. .+|+.+ +.+.+|++|.+++|++... -..+..++.|+.+++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 455677777777 347777777777777777777765 667765 6777777777777776432 345666777777777
Q ss_pred cCCcCc-cCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcC
Q 040297 228 SKNFFQ-GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNL 306 (773)
Q Consensus 228 s~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 306 (773)
..|++. .-+|..+|. +..|..|||++|++. ..|..+..-+++-+|+||+|+|. .||..++.++..|-.||||+|++
T Consensus 86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 777663 346666765 667777777777776 56666777777777777777776 77777666666666666666666
Q ss_pred CCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCC-CCcchhhcCCCCCcEEEcccCcCCCCcccc
Q 040297 307 QGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS-GRIPRWLGNLSALEDIRMSNNNLEGPIPIE 385 (773)
Q Consensus 307 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 385 (773)
... |+.+..+.+|++|+|++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|++
T Consensus 163 e~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 EML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 533 334455556666666665544222222333444444444443211 123444444444444444444443 33444
Q ss_pred ccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcE
Q 040297 386 FCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSS 465 (773)
Q Consensus 386 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 465 (773)
+-.+++|+.|+||+| +|+ ......+...+|++
T Consensus 241 ly~l~~LrrLNLS~N-----------------------------------------------~it-eL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGN-----------------------------------------------KIT-ELNMTEGEWENLET 272 (1255)
T ss_pred HhhhhhhheeccCcC-----------------------------------------------cee-eeeccHHHHhhhhh
Confidence 444444444444444 333 12222223344555
Q ss_pred EEccCccccccCcccccCCCCCCEEEccCCcCC-CcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCC
Q 040297 466 LLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS-GYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPM 544 (773)
Q Consensus 466 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (773)
|+|+.|+++ .+|.+++.+++|+.|.+.+|+++ .-+|+.++.
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK------------------------------------- 314 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK------------------------------------- 314 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh-------------------------------------
Confidence 555555555 45555555566665555555553 123333332
Q ss_pred CCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCcc
Q 040297 545 GKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624 (773)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 624 (773)
+..|+.+..++|.+. .+|+.+..+..|+.|.|++|++. ..|+.+.-++.|+.||+..
T Consensus 315 ---------------------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 315 ---------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred ---------------------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccC
Confidence 336677777777777 78888999999999999999988 7889999999999999999
Q ss_pred ccCcccCCcccccCCCCCEEEccC
Q 040297 625 NLLHGKIPSQLTVLNTLAVFKVAY 648 (773)
Q Consensus 625 N~l~~~~p~~l~~l~~L~~L~ls~ 648 (773)
|+-.-.+|.--..-++|+.-++..
T Consensus 372 NpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 372 NPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred CcCccCCCCcchhhhcceeeecce
Confidence 976645553333335666655543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-33 Score=285.75 Aligned_cols=369 Identities=26% Similarity=0.358 Sum_probs=284.5
Q ss_pred CCCcCEEEccCCcCc-cCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCcc
Q 040297 219 YQKLAILDVSKNFFQ-GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLE 297 (773)
Q Consensus 219 l~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 297 (773)
++-.+-.|+++|.++ +..|..+-+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+. .++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhH
Confidence 556677899999988 567777665 788999999988887 78899999999999999999887 6655554 488889
Q ss_pred EEEcccCcCCC-cCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccC
Q 040297 298 ILALSNNNLQG-HIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNN 376 (773)
Q Consensus 298 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 376 (773)
.+.+..|++.. -+|..+..+..|+.|||++|+++ ..|..+..-+++-.|+|++|+|..+....|.++..|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 99999988864 45667778999999999999998 77888888888999999999998655567778888889999999
Q ss_pred cCCCCccccccCCCCCcEEEccCCCCCCC-CCCCCCCCceeEEECCCcccc-ccchhhhcCCCCeeEEeCCCCccccccc
Q 040297 377 NLEGPIPIEFCQLDYLTILDLSNNAIFGT-LPSCFSPAFIEQVHLSKNKIE-GQLESIIHDSPYLVTLDLSYNRFHGSIP 454 (773)
Q Consensus 377 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 454 (773)
++. .+|..+..+..|++|+|++|.+... +...-++++|+.|.+++.+-+ ..+|..+.++.+|..+|+|.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 987 5667788888999999999887431 112223566777777776533 345666777788888888888887 678
Q ss_pred hhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCC
Q 040297 455 NWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSP 534 (773)
Q Consensus 455 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (773)
+.+-.+++|+.|+|++|+|+ .+........+|+.|++|+|+++ .+|.++..
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------- 289 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------- 289 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------
Confidence 88888888888888888887 44555666777888888888886 56666554
Q ss_pred CCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc-cCChhhhccCCCCeEeCCCCcCCCCCcccccc
Q 040297 535 CLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSN 613 (773)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 613 (773)
++.|+.|++.+|+++- -||..++.+.+|+++..++|.+. ..|+.+..
T Consensus 290 -------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR 337 (1255)
T KOG0444|consen 290 -------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR 337 (1255)
T ss_pred -------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhh
Confidence 3467777777777663 46777888888888888888887 77888888
Q ss_pred CccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCC
Q 040297 614 LKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 614 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
+..|+.|.|++|++. .+|+.+.-++.|++||+..|+--...|
T Consensus 338 C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 888888888888876 677788888888888888886444444
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-29 Score=242.16 Aligned_cols=276 Identities=20% Similarity=0.199 Sum_probs=184.1
Q ss_pred CcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeec-ccCCCccchhHhhcCCCccEE
Q 040297 221 KLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISY-NQLTGEIPERMATGCFLLEIL 299 (773)
Q Consensus 221 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L 299 (773)
.-..++|..|.|+ .+|...|+.+++|+.|||++|+|+.+.|++|.++++|.+|-+.+ |+|+ .+|...|.++.+++.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 4456666666666 67777777777777777777777777777777777776665555 6776 7777777777777777
Q ss_pred EcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCC------------CCcchhhcCCCC
Q 040297 300 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS------------GRIPRWLGNLSA 367 (773)
Q Consensus 300 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~ 367 (773)
.+.-|++.-+..+.|..++++..|.+-+|.+..+-...|..+..++.+.+..|.+. ...|..+++..-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 77777777777777777777777777777776443346777777777777766621 122223333333
Q ss_pred CcEEEcccCcCCCCccccccCC-CCCcEEEccCCCCCCCCC-CCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeC
Q 040297 368 LEDIRMSNNNLEGPIPIEFCQL-DYLTILDLSNNAIFGTLP-SCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDL 444 (773)
Q Consensus 368 L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 444 (773)
..-..+.+.++..+.+..|... ..+..=-.+.+...+..| .+|. +++|+.|++++|+++++.+.+|.+...+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 3333444444443333333221 222111112222222333 2333 778888888888888888888888888888888
Q ss_pred CCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCC
Q 040297 445 SYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 445 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|..|.+-.|.+.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 888888666677888888888888888888888888888888888888888775
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=250.31 Aligned_cols=339 Identities=22% Similarity=0.230 Sum_probs=196.1
Q ss_pred CccCCCCcCEEEccCCc------CccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchh
Q 040297 215 PIHSYQKLAILDVSKNF------FQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPER 288 (773)
Q Consensus 215 ~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 288 (773)
.|..+++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..| ...+|++|++++|.+. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 35555666666654432 122344444332235666666666554 445444 3456666666666655 45544
Q ss_pred HhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCC
Q 040297 289 MATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSAL 368 (773)
Q Consensus 289 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 368 (773)
+. .+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|
T Consensus 630 ~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 VH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred cc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 32 35666666666554333333 24556666666666655444566666666666666666654333445433 45666
Q ss_pred cEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccc-------cccchhhhcCCCCeeE
Q 040297 369 EDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKI-------EGQLESIIHDSPYLVT 441 (773)
Q Consensus 369 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l-------~~~~~~~~~~~~~L~~ 441 (773)
+.|++++|......|.. ..+|+.|++++|.+. .+|....+++|+.|++.++.. ....+..+..+++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 66666666544333322 345666666666654 344444455666666655321 1112222333466777
Q ss_pred EeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCC
Q 040297 442 LDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPT 521 (773)
Q Consensus 442 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 521 (773)
|++++|.....+|..++.+++|+.|++++|...+.+|... .+++|+.|++++|.....+|.
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~------------------ 843 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD------------------ 843 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc------------------
Confidence 7777776666677777777777777777765444566544 577777777777654322221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCC
Q 040297 522 SIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHN 601 (773)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 601 (773)
..++++.|+|++|.++ .+|..+..+++|++|+|++|
T Consensus 844 -------------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 844 -------------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred -------------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 1236777788888777 67777777888888888774
Q ss_pred cCCCCCccccccCccCCeeeCcccc
Q 040297 602 NLTGTIPTTFSNLKQIESLDLSYNL 626 (773)
Q Consensus 602 ~l~~~~p~~~~~l~~L~~LdLs~N~ 626 (773)
+-...+|..+..+++|+.+++++|.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCc
Confidence 4333566667777777777777774
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-26 Score=225.01 Aligned_cols=280 Identities=20% Similarity=0.203 Sum_probs=218.9
Q ss_pred EEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEccc-
Q 040297 225 LDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN- 303 (773)
Q Consensus 225 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~- 303 (773)
.+-++-.++ ++|..+. +.-.+++|..|+|+.+.|.+|+.+++|+.|||++|+|+ .|....|.++.++..|-+.+
T Consensus 51 VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 344444555 7776653 47889999999999888899999999999999999999 88888888999988877665
Q ss_pred CcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCC---
Q 040297 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEG--- 380 (773)
Q Consensus 304 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 380 (773)
|+|+......|.++..++.|.+.-|++.-+..+.|..++++..|.+.+|.+..+.-..|..+..++.+.+..|.+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 99999888999999999999999999998888899999999999999999985544588899999999988887421
Q ss_pred ---------CccccccCCCCCcEEEccCCCCCCCCCCCCCCC--ceeEEECCCcccc-ccchhhhcCCCCeeEEeCCCCc
Q 040297 381 ---------PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPA--FIEQVHLSKNKIE-GQLESIIHDSPYLVTLDLSYNR 448 (773)
Q Consensus 381 ---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~ 448 (773)
..|..+++..-..-..+.+.++....+..|.+. .+..-..+.+... ..+...|..+++|++|++++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 122333333333334444444444444333322 2211112223233 3344678999999999999999
Q ss_pred cccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccC
Q 040297 449 FHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTS 509 (773)
Q Consensus 449 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 509 (773)
++++-+.+|.....++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|....
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 9999999999999999999999999977778899999999999999999988888876654
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=243.97 Aligned_cols=342 Identities=22% Similarity=0.238 Sum_probs=246.2
Q ss_pred CchhHhhCCCCCcEEEccCCc------cCccCchhhhCCC-CCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCC
Q 040297 236 IPVEIGTYLPGLMDLNLSRNA------FNGSIPSSFADMK-MLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG 308 (773)
Q Consensus 236 ~~~~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 308 (773)
+....|..+++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..+ ...+|+.|++++|.+..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence 344455567888888886553 2234566666664 5888888888877 777665 26788888888888764
Q ss_pred cCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccC
Q 040297 309 HIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQ 388 (773)
Q Consensus 309 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 388 (773)
.+..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ +
T Consensus 626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 345567788888888887765445664 6778888888888877666778888888888888888876555666544 6
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccc-------cccchhhhcCC
Q 040297 389 LDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH-------GSIPNWINILP 461 (773)
Q Consensus 389 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-------~~~~~~~~~l~ 461 (773)
+++|+.|++++|...+.+|.. ..+|+.|++++|.+... |..+ .+++|++|++.++... ...+......+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 788888888888665555543 45788888888887643 3322 4677777877764321 11122233356
Q ss_pred CCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCC
Q 040297 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSG 541 (773)
Q Consensus 462 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (773)
+|+.|++++|...+.+|..+.++++|+.|++++|...+.+|...
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------ 822 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------ 822 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence 88888888888777788888888888888888876544555322
Q ss_pred CCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeee
Q 040297 542 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLD 621 (773)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld 621 (773)
.+++|+.|++++|..-..+|.. .++|++|+|++|.++ .+|..+..+++|+.|+
T Consensus 823 -----------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 823 -----------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLD 875 (1153)
T ss_pred -----------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence 1458899999998655456653 367999999999998 7898999999999999
Q ss_pred CccccCcccCCcccccCCCCCEEEccCCc
Q 040297 622 LSYNLLHGKIPSQLTVLNTLAVFKVAYNN 650 (773)
Q Consensus 622 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 650 (773)
|++|+-...+|..+..+++|+.+++++|.
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99965445678888899999999999985
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=219.50 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=39.5
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCccccc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
.|+.|++++|+++ .+|... .+|+.|++++|+|+ .+|..+.++++|+.|+|++|++++.+|..+..
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 4556666666666 345432 34566666666666 56666666666666666666666666655533
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-21 Score=215.28 Aligned_cols=266 Identities=23% Similarity=0.328 Sum_probs=151.9
Q ss_pred cCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEc
Q 040297 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301 (773)
Q Consensus 222 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 301 (773)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceeec
Confidence 344555555555 4554432 245555555555542 332 1344555555555554 44421 234444444
Q ss_pred ccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCC
Q 040297 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGP 381 (773)
Q Consensus 302 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 381 (773)
++|.+.. +|..+ ++|+.|++++|+++. +|. ..++|+.|++++|.+.+
T Consensus 270 s~N~L~~-------------------------Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 270 FSNPLTH-------------------------LPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS- 316 (788)
T ss_pred cCCchhh-------------------------hhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-
Confidence 4444443 22211 334445555555442 222 12345555555555543
Q ss_pred ccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCC
Q 040297 382 IPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILP 461 (773)
Q Consensus 382 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 461 (773)
+|.. ..+|+.|++++|.+++ +|.. +.+|+.|++++|+++..++ . .++|+.|++++|+++. +|.. .+
T Consensus 317 Lp~l---p~~L~~L~Ls~N~L~~-LP~l--p~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~~-LP~l---~~ 382 (788)
T PRK15387 317 LPAL---PSELCKLWAYNNQLTS-LPTL--PSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLTS-LPAL---PS 382 (788)
T ss_pred CCCC---cccccccccccCcccc-cccc--ccccceEecCCCccCCCCC-C---Ccccceehhhcccccc-Cccc---cc
Confidence 2221 1234455555555543 2221 2356666666666654322 1 2457777788887773 5543 35
Q ss_pred CCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCC
Q 040297 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSG 541 (773)
Q Consensus 462 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (773)
+|+.|++++|++++ +|.. .++|+.|++++|++++ +|..
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l------------------------------------- 420 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML------------------------------------- 420 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc-------------------------------------
Confidence 68888888888874 4532 3578889999998874 4431
Q ss_pred CCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccC
Q 040297 542 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 614 (773)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 614 (773)
+..|+.|++++|+++ .+|..+..+++|+.|+|++|.+++..|..+..+
T Consensus 421 ------------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 421 ------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred ------------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 125677999999998 789999999999999999999998888776443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=201.65 Aligned_cols=97 Identities=23% Similarity=0.325 Sum_probs=44.8
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEc
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQL 325 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 325 (773)
+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..++ .+|+.|++++|.+++. |..+ ..+|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEEC
Confidence 4555666665555 2443332 34556666666655 5554432 3455555555555432 2222 124444555
Q ss_pred ccccCCccccccccCCCCCCeeeCcCCcCC
Q 040297 326 DGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355 (773)
Q Consensus 326 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 355 (773)
++|++. .+|..+. ++|+.|++++|+++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 554444 3333322 23444444444444
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-19 Score=198.96 Aligned_cols=161 Identities=24% Similarity=0.303 Sum_probs=105.2
Q ss_pred CCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEE
Q 040297 220 QKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEIL 299 (773)
Q Consensus 220 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 299 (773)
.+.+.|+++++.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEE
Confidence 35677888888887 6776543 47888888888887 4555443 57888888888887 7776543 468888
Q ss_pred EcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCC
Q 040297 300 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLE 379 (773)
Q Consensus 300 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 379 (773)
++++|.+..+ |..+ ..+|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.+.
T Consensus 247 ~Ls~N~L~~L-P~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 247 ELSINRITEL-PERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred ECcCCccCcC-ChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 8888888743 4443 247888888888887 4565443 467777887777763 343332 35666666666665
Q ss_pred CCccccccCCCCCcEEEccCCCCC
Q 040297 380 GPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 380 ~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
. +|..+ .++|+.|++++|.++
T Consensus 318 ~-LP~~l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 318 A-LPETL--PPGLKTLEAGENALT 338 (754)
T ss_pred c-CCccc--cccceeccccCCccc
Confidence 3 33322 145555555555554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-19 Score=187.15 Aligned_cols=105 Identities=26% Similarity=0.219 Sum_probs=50.3
Q ss_pred EEEcccCcCCC-cCcccccCCCCCcEEEcccccCCcc----ccccccCCCCCCeeeCcCCcCCC------CcchhhcCCC
Q 040297 298 ILALSNNNLQG-HIFSKKFNLTNLMRLQLDGNNFTGE----ISDSLSNCRLLAGLYLSDNHLSG------RIPRWLGNLS 366 (773)
Q Consensus 298 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~ 366 (773)
.|+|..+.+++ .....+..+.+|++++++++.++.. ++..+...+.++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35555666552 2223334455566666666666422 33334455556666666655541 1223344455
Q ss_pred CCcEEEcccCcCCCCccccccCCCC---CcEEEccCCCC
Q 040297 367 ALEDIRMSNNNLEGPIPIEFCQLDY---LTILDLSNNAI 402 (773)
Q Consensus 367 ~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l 402 (773)
+|+.|++++|.+.+..+..+..+.. |+.|++++|.+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 5555555555554333333332222 44444444443
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-18 Score=181.51 Aligned_cols=272 Identities=23% Similarity=0.238 Sum_probs=136.3
Q ss_pred EEEccCCcCcc-CCccCccCCCCcCEEEccCCcCccC----CchhHhhCCCCCcEEEccCCccCc------cCchhhhCC
Q 040297 200 TLLLANNSLFG-SFRMPIHSYQKLAILDVSKNFFQGH----IPVEIGTYLPGLMDLNLSRNAFNG------SIPSSFADM 268 (773)
Q Consensus 200 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l 268 (773)
.|+|..+.+++ .....+..+..|++|+++++.++.. ++..+. ..+.+++++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 45666666653 2233345566678888887776422 222222 24567777777776652 233456667
Q ss_pred CCCcEEEeecccCCCccchhHhhcCCC---ccEEEcccCcCCC----cCcccccCC-CCCcEEEcccccCCcc----ccc
Q 040297 269 KMLERLDISYNQLTGEIPERMATGCFL---LEILALSNNNLQG----HIFSKKFNL-TNLMRLQLDGNNFTGE----ISD 336 (773)
Q Consensus 269 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~ 336 (773)
++|++|++++|.+.+..+..+. .+.+ |++|++++|.+.+ .+...+..+ ++|++|++++|.+++. ++.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 7777777777776643333322 2333 6666666666652 111223344 5666666666665521 223
Q ss_pred cccCCCCCCeeeCcCCcCCCC----cchhhcCCCCCcEEEcccCcCCCCc----cccccCCCCCcEEEccCCCCCCCCCC
Q 040297 337 SLSNCRLLAGLYLSDNHLSGR----IPRWLGNLSALEDIRMSNNNLEGPI----PIEFCQLDYLTILDLSNNAIFGTLPS 408 (773)
Q Consensus 337 ~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~ 408 (773)
.+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.. ...+..+++|+.|++++|.+.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~----- 234 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT----- 234 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc-----
Confidence 344445566666665555531 1222333445555555555554221 122333444555555544443
Q ss_pred CCCCCceeEEECCCccccccchhhh-----cCCCCeeEEeCCCCcccc----ccchhhhcCCCCcEEEccCcccccc---
Q 040297 409 CFSPAFIEQVHLSKNKIEGQLESII-----HDSPYLVTLDLSYNRFHG----SIPNWINILPQLSSLLLGNNYIEGE--- 476 (773)
Q Consensus 409 ~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~--- 476 (773)
+.....+ ...+.|++|++++|.+++ .+...+..+++|+.+++++|.+...
T Consensus 235 ------------------~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 235 ------------------DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred ------------------hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 2111111 112456666666665542 1223334445666666666666533
Q ss_pred -CcccccCC-CCCCEEEccCCc
Q 040297 477 -IPVQLCEL-KEVRLIDLSHNN 496 (773)
Q Consensus 477 -~~~~~~~l-~~L~~L~L~~N~ 496 (773)
....+... +.|+.+++.+|.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCC
Confidence 22233333 456666666554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-18 Score=148.02 Aligned_cols=168 Identities=29% Similarity=0.487 Sum_probs=127.1
Q ss_pred CCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCC
Q 040297 406 LPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK 485 (773)
Q Consensus 406 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 485 (773)
++..|.+..++.|.+++|+++...| .++.+.+|+.|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 4455556677777777777775544 4567788888888888888 67778888888888888888887 7888888888
Q ss_pred CCCEEEccCCcCCC-cCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccccc
Q 040297 486 EVRLIDLSHNNLSG-YIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGR 564 (773)
Q Consensus 486 ~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (773)
.|+.||+++|++.. .+|..|..
T Consensus 103 ~levldltynnl~e~~lpgnff~--------------------------------------------------------- 125 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFY--------------------------------------------------------- 125 (264)
T ss_pred hhhhhhccccccccccCCcchhH---------------------------------------------------------
Confidence 88888888888763 23433332
Q ss_pred ccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCccccc
Q 040297 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 565 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
++.|+.|+|++|.+. .+|..++.+++|+.|.+..|.+- ..|..++.+++|++|++.+|+++ .+|.+++.
T Consensus 126 -m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 126 -MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred -HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 346777888888887 77888888888888888888887 67888888888888888888887 45555444
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-18 Score=149.77 Aligned_cols=178 Identities=27% Similarity=0.457 Sum_probs=149.5
Q ss_pred CCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccc
Q 040297 435 DSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDY 514 (773)
Q Consensus 435 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~ 514 (773)
.+..++.|.+|+|+++ .+|..+..+.+|++|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs------- 100 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS------- 100 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-------
Confidence 4567889999999999 67778899999999999999998 78999999999999999999886 56666554
Q ss_pred cCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc-cCChhhhccCCC
Q 040297 515 HEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRI 593 (773)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L 593 (773)
++.|+.|||+.|++.. ..|..|..++.|
T Consensus 101 ---------------------------------------------------~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 101 ---------------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred ---------------------------------------------------CchhhhhhccccccccccCCcchhHHHHH
Confidence 3478899999999875 578899999999
Q ss_pred CeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccC---CcCcc
Q 040297 594 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTF---EEDSY 670 (773)
Q Consensus 594 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l---~~~~l 670 (773)
+.|+|+.|.+. .+|..++++++|+.|.+..|.+. ..|.+++.++.|+.|.+.+|+++...|. ++++.-. .....
T Consensus 130 ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~ 206 (264)
T KOG0617|consen 130 RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRM 206 (264)
T ss_pred HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhh
Confidence 99999999998 88889999999999999999988 7899999999999999999999977765 4544321 22335
Q ss_pred cCCCCC
Q 040297 671 EGNPFL 676 (773)
Q Consensus 671 ~~Np~l 676 (773)
+.|||.
T Consensus 207 E~NPwv 212 (264)
T KOG0617|consen 207 EENPWV 212 (264)
T ss_pred hhCCCC
Confidence 566664
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=173.05 Aligned_cols=119 Identities=33% Similarity=0.601 Sum_probs=108.9
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCccc-ccCCcCcccCCCCCCCCCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQF-STFEEDSYEGNPFLCGWPLSKSCD 686 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~-~~l~~~~l~~Np~lC~~~l~~~c~ 686 (773)
+|+++|.+|..++.. ..+..+++.+|+++|++|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876543 355678899999999987655663
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-11 Score=138.15 Aligned_cols=113 Identities=31% Similarity=0.508 Sum_probs=100.8
Q ss_pred CCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccc
Q 040297 486 EVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI 565 (773)
Q Consensus 486 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (773)
.++.|+|++|.+.|.+|..+..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~---------------------------------------------------------- 440 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK---------------------------------------------------------- 440 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC----------------------------------------------------------
Confidence 4778999999999999987764
Q ss_pred cccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccC-CCCCEE
Q 040297 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL-NTLAVF 644 (773)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L 644 (773)
+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 3489999999999999999999999999999999999999999999999999999999999999999998764 467889
Q ss_pred EccCCcccccCC
Q 040297 645 KVAYNNLSGKIP 656 (773)
Q Consensus 645 ~ls~N~l~~~~p 656 (773)
++++|....-.|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 999997543344
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-13 Score=137.94 Aligned_cols=177 Identities=28% Similarity=0.438 Sum_probs=143.6
Q ss_pred CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEE
Q 040297 412 PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491 (773)
Q Consensus 412 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 491 (773)
+..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+..+..|..++|+.|+++ ..|..++.++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456788888876 44556666777888888888887 67888888888888888888887 6777777776 78888
Q ss_pred ccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccE
Q 040297 492 LSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSG 571 (773)
Q Consensus 492 L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 571 (773)
+++|+++ .+|..++. +..|..
T Consensus 150 ~sNNkl~-~lp~~ig~----------------------------------------------------------~~tl~~ 170 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGL----------------------------------------------------------LPTLAH 170 (722)
T ss_pred EecCccc-cCCccccc----------------------------------------------------------chhHHH
Confidence 8888886 45554431 347888
Q ss_pred EecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcc
Q 040297 572 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL 651 (773)
Q Consensus 572 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l 651 (773)
||.+.|++. .+|..++++.+|+.|++..|++. ..|..+..| .|..||+|.|+++ .||..|..|..|++|-|.+|+|
T Consensus 171 ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 171 LDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCC
Confidence 999999998 78999999999999999999999 677777755 5778999999998 8999999999999999999999
Q ss_pred cccC
Q 040297 652 SGKI 655 (773)
Q Consensus 652 ~~~~ 655 (773)
+.+.
T Consensus 247 qSPP 250 (722)
T KOG0532|consen 247 QSPP 250 (722)
T ss_pred CCCh
Confidence 8543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.7e-13 Score=136.32 Aligned_cols=196 Identities=25% Similarity=0.402 Sum_probs=162.7
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEE
Q 040297 388 QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467 (773)
Q Consensus 388 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 467 (773)
.+..-...|++.|++.....+...+..|+.+.+..|.+. .+|..+.++..|+++||+.|+++ ..|..+..+| |++|.
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 455567889999999855544444778999999999886 45667888999999999999999 7888888877 99999
Q ss_pred ccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCc
Q 040297 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKE 547 (773)
Q Consensus 468 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (773)
+++|+++ .+|..++.++.|..||.+.|.+. .+|..++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~---------------------------------------- 187 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY---------------------------------------- 187 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh----------------------------------------
Confidence 9999998 78889999999999999999996 55655543
Q ss_pred ceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 548 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
+.+|+.|.+..|++. ..|+++..|+ |..||+|+|+++ .+|-+|.+|+.|++|-|.+|+|
T Consensus 188 ------------------l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 188 ------------------LTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ------------------HHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCC
Confidence 458888999999998 6888888664 999999999999 8999999999999999999999
Q ss_pred cccCCccc---ccCCCCCEEEccCCc
Q 040297 628 HGKIPSQL---TVLNTLAVFKVAYNN 650 (773)
Q Consensus 628 ~~~~p~~l---~~l~~L~~L~ls~N~ 650 (773)
. ..|..+ +...-.++|+..-++
T Consensus 247 q-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 247 Q-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C-CChHHHHhccceeeeeeecchhcc
Confidence 8 556554 334455788888775
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.9e-11 Score=128.85 Aligned_cols=180 Identities=31% Similarity=0.446 Sum_probs=109.5
Q ss_pred CceeEEECCCccccccchhhhcCC-CCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEE
Q 040297 413 AFIEQVHLSKNKIEGQLESIIHDS-PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491 (773)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 491 (773)
+.++.+++.+|.++.+.+. .... ++|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 3444555555544433321 2222 25666666666666 34445666677777777777766 3444444666677777
Q ss_pred ccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccE
Q 040297 492 LSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSG 571 (773)
Q Consensus 492 L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 571 (773)
+++|++. .+|.... .+..|++
T Consensus 193 ls~N~i~-~l~~~~~----------------------------------------------------------~~~~L~~ 213 (394)
T COG4886 193 LSGNKIS-DLPPEIE----------------------------------------------------------LLSALEE 213 (394)
T ss_pred ccCCccc-cCchhhh----------------------------------------------------------hhhhhhh
Confidence 7777765 2332211 0224667
Q ss_pred EecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcc
Q 040297 572 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL 651 (773)
Q Consensus 572 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l 651 (773)
+++++|.+. .++..+..+.++..|.+++|++. ..+..++.+++++.|++++|.++...+ +..+.+++.|++++|.+
T Consensus 214 l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 214 LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccc
Confidence 777777544 45666777777777777777776 346667777777777777777774433 67777777777777777
Q ss_pred cccCCCC
Q 040297 652 SGKIPDR 658 (773)
Q Consensus 652 ~~~~p~~ 658 (773)
+...|..
T Consensus 290 ~~~~~~~ 296 (394)
T COG4886 290 SNALPLI 296 (394)
T ss_pred cccchhh
Confidence 7666653
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-11 Score=117.33 Aligned_cols=62 Identities=35% Similarity=0.451 Sum_probs=40.5
Q ss_pred cCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCC
Q 040297 434 HDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 434 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
..++.|+++|||+|.|+ .+.+...-.|.++.|++++|.+... +.+..+++|+.|||++|.++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence 33456777777777777 5566666677777777777777632 23556666666666666554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-10 Score=126.48 Aligned_cols=179 Identities=36% Similarity=0.519 Sum_probs=81.8
Q ss_pred CCcCEEEccCCcCccCCchhHhhCCC-CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE
Q 040297 220 QKLAILDVSKNFFQGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298 (773)
Q Consensus 220 ~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 298 (773)
+.++.|++.+|.++ .++..... .+ +|++|++++|.+. .+|..++.+++|+.|++++|+++ .+|.... ..+.|+.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN 190 (394)
T ss_pred cceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence 34444444444444 33333221 21 4444444444444 23333444555555555555544 4443321 1444444
Q ss_pred EEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcC
Q 040297 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378 (773)
Q Consensus 299 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 378 (773)
|++++|++....+ .......|+++.+++|.+. ..+..+..++++..+.+.+|++. ..+..++.+++++.|++++|.+
T Consensus 191 L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 191 LDLSGNKISDLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eeccCCccccCch-hhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccc
Confidence 5555554443221 1122333555555555322 23334455555555555555554 2244455555566666666655
Q ss_pred CCCccccccCCCCCcEEEccCCCCCCCCCC
Q 040297 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408 (773)
Q Consensus 379 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 408 (773)
+.... +....+++.|++++|.+....+.
T Consensus 268 ~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 268 SSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccc--ccccCccCEEeccCccccccchh
Confidence 53222 55555566666666555544443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-11 Score=116.66 Aligned_cols=141 Identities=24% Similarity=0.190 Sum_probs=72.9
Q ss_pred hcCCCCCCEEECCCCCCccccch---hHhhcCCCCCEEEccCCcCccCC-------------ccCccCCCCcCEEEccCC
Q 040297 167 LYHQHDLKNADLSHLNLSGNFPN---WLVENNTNLETLLLANNSLFGSF-------------RMPIHSYQKLAILDVSKN 230 (773)
Q Consensus 167 l~~~~~L~~L~L~~~~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~Ls~n 230 (773)
+..+++|++++||.|-+....+. .++..+..|++|.|.+|.+.-.- .....+-++|+++..++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 44445555566665555433222 22345566666666666542110 111234466778888877
Q ss_pred cCccCCc---hhHhhCCCCCcEEEccCCccCcc----CchhhhCCCCCcEEEeecccCCCccchhH---hhcCCCccEEE
Q 040297 231 FFQGHIP---VEIGTYLPGLMDLNLSRNAFNGS----IPSSFADMKMLERLDISYNQLTGEIPERM---ATGCFLLEILA 300 (773)
Q Consensus 231 ~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~~l~~L~~L~ 300 (773)
++...-. ...++..+.|+.+.++.|.|... +..+|..+++|++|||..|-++..-...+ ...+++|+.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 7752211 12334456777777777776522 22346677777777777776652221111 12233445555
Q ss_pred cccCcCC
Q 040297 301 LSNNNLQ 307 (773)
Q Consensus 301 L~~n~l~ 307 (773)
+++|.+.
T Consensus 248 l~dcll~ 254 (382)
T KOG1909|consen 248 LGDCLLE 254 (382)
T ss_pred ccccccc
Confidence 5555444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-11 Score=117.72 Aligned_cols=176 Identities=21% Similarity=0.225 Sum_probs=87.5
Q ss_pred cCCCCCcEEEcccccCCcc----ccccccCCCCCCeeeCcCCcC---CCCcch-------hhcCCCCCcEEEcccCcCCC
Q 040297 315 FNLTNLMRLQLDGNNFTGE----ISDSLSNCRLLAGLYLSDNHL---SGRIPR-------WLGNLSALEDIRMSNNNLEG 380 (773)
Q Consensus 315 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l---~~~~~~-------~~~~l~~L~~L~L~~n~l~~ 380 (773)
..+..++.+++++|.+... +...+.+.+.|+..++++-.. ...+|. ++..+++|+.++||+|-+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3456677777777766422 223344555666666554211 111222 22334455555555555542
Q ss_pred Ccccc----ccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccc----
Q 040297 381 PIPIE----FCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGS---- 452 (773)
Q Consensus 381 ~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~---- 452 (773)
..+.. +..+..|+.|.|.+|.+.-.-.... -..|..|. .......-+.|++++..+|++...
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELA---------VNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHH---------HHhccCCCcceEEEEeeccccccccHHH
Confidence 22222 2234455555555543321000000 00011100 011122346678888888877642
Q ss_pred cchhhhcCCCCcEEEccCcccccc----CcccccCCCCCCEEEccCCcCCCc
Q 040297 453 IPNWINILPQLSSLLLGNNYIEGE----IPVQLCELKEVRLIDLSHNNLSGY 500 (773)
Q Consensus 453 ~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~ 500 (773)
+...|...+.|+.+.+..|.|... +...+..+++|++|||.+|-++..
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 233456677888888888877522 234567778888888888877643
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.9e-11 Score=118.76 Aligned_cols=211 Identities=21% Similarity=0.165 Sum_probs=114.8
Q ss_pred CCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCc--cCccCCCCcCEEEccCCcCccCCchhHhhCCCC
Q 040297 169 HQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFR--MPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPG 246 (773)
Q Consensus 169 ~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 246 (773)
++.+|+.+.|.++.............|++++.|||++|-+....+ .....+|+|+.|+++.|++........-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 445566666666555422111334556666677776665543222 223456666677777666643222222223566
Q ss_pred CcEEEccCCccCccCc-hhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcC-cccccCCCCCcEEE
Q 040297 247 LMDLNLSRNAFNGSIP-SSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI-FSKKFNLTNLMRLQ 324 (773)
Q Consensus 247 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 324 (773)
|+.|.|+.|.++.... .....+|+|+.|+|..|... .+...-..-+..|+.|+|++|++.... ....+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 7777777776653221 22345667777777766321 111111122455677777777665422 12345667777777
Q ss_pred cccccCCcc-cccc-----ccCCCCCCeeeCcCCcCCCCcc--hhhcCCCCCcEEEcccCcCCCC
Q 040297 325 LDGNNFTGE-ISDS-----LSNCRLLAGLYLSDNHLSGRIP--RWLGNLSALEDIRMSNNNLEGP 381 (773)
Q Consensus 325 L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~ 381 (773)
++.+.+... .|+. ...+++|++|++..|++.. .+ ..+..+++|+.|.+..|.+..+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence 777776543 2222 2446778888888887752 22 2344556777777777777643
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.2e-11 Score=120.03 Aligned_cols=163 Identities=24% Similarity=0.214 Sum_probs=96.4
Q ss_pred hcCCCCCEEEccCCcCccCCc-cCccCCCCcCEEEccCCcCccCCc-hhHhhCCCCCcEEEccCCccCccCch-hhhCCC
Q 040297 193 ENNTNLETLLLANNSLFGSFR-MPIHSYQKLAILDVSKNFFQGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMK 269 (773)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~ 269 (773)
.++.+|++..|.++....... .....|++++.|||+.|-+....+ ..+...+|+|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356678888888776643221 245567888888888886652222 23445578888888888876532211 112456
Q ss_pred CCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccc-cccccCCCCCCeee
Q 040297 270 MLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEI-SDSLSNCRLLAGLY 348 (773)
Q Consensus 270 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 348 (773)
+|+.|.++.|.++..--.++...+++|+.|+++.|............+..|++|||++|++.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 77777887777764333444455777777777777533222233344566777777776664221 12344556666666
Q ss_pred CcCCcCC
Q 040297 349 LSDNHLS 355 (773)
Q Consensus 349 L~~n~l~ 355 (773)
++.+.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 6665554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.8e-11 Score=113.58 Aligned_cols=130 Identities=27% Similarity=0.270 Sum_probs=82.0
Q ss_pred CCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCee
Q 040297 268 MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347 (773)
Q Consensus 268 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 347 (773)
...|+++||++|.|+ .+.+.+- -.+.++.|++++|.+..+ +.++.+++|+.||+++|.++ .+..+-..+.+.++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 355777777777776 6665553 367777777777777643 23566777777777777766 333333456667777
Q ss_pred eCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCc-cccccCCCCCcEEEccCCCCCC
Q 040297 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPI-PIEFCQLDYLTILDLSNNAIFG 404 (773)
Q Consensus 348 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~ 404 (773)
.+++|.+... ..++.+-+|..||+++|++.... ...++++|.|+.+.+.+|.+.+
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777776532 34556667777777777765321 2345666666666666666653
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=6e-10 Score=103.04 Aligned_cols=108 Identities=29% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE
Q 040297 219 YQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298 (773)
Q Consensus 219 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 298 (773)
..++++|+|++|.|+ .+. .+...+.+|+.|++++|.++.. +.+..+++|++|++++|.++ .++..+...+++|+.
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 334555555555554 332 2322345666666666666632 23556667777777777766 554444334666666
Q ss_pred EEcccCcCCCcC-cccccCCCCCcEEEcccccCC
Q 040297 299 LALSNNNLQGHI-FSKKFNLTNLMRLQLDGNNFT 331 (773)
Q Consensus 299 L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 331 (773)
|++++|++.... -..+..+++|+.|++.+|.++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666665421 123344555555555555554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-09 Score=99.49 Aligned_cols=124 Identities=26% Similarity=0.311 Sum_probs=38.3
Q ss_pred CCcEEEcccCcCCCCcccccc-CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCC
Q 040297 367 ALEDIRMSNNNLEGPIPIEFC-QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLS 445 (773)
Q Consensus 367 ~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls 445 (773)
++++|+|.+|.++.+ +.+. .+.+|+.|++++|.++. ++....++.|+.|++++|+|+...+.....+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 344444444444421 1222 23444455555554442 2222234455555555555554433222346677777777
Q ss_pred CCcccccc-chhhhcCCCCcEEEccCccccccC---cccccCCCCCCEEEcc
Q 040297 446 YNRFHGSI-PNWINILPQLSSLLLGNNYIEGEI---PVQLCELKEVRLIDLS 493 (773)
Q Consensus 446 ~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~ 493 (773)
+|+|.+.. -..+..+++|++|+|.+|+++... ...+..+|+|+.||-.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 77776421 234566777777777777776331 1235567777777643
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-09 Score=82.36 Aligned_cols=59 Identities=44% Similarity=0.596 Sum_probs=28.6
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCcccc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 626 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 626 (773)
+|+.|++++|+++...+..|..+++|++|++++|.++...|+.|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555555553333444445555555555555544444445555555555555444
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-09 Score=81.76 Aligned_cols=61 Identities=39% Similarity=0.568 Sum_probs=57.7
Q ss_pred CCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL 651 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l 651 (773)
++|++|++++|+++...++.|.++++|++||+++|+++...|..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999987778999999999999999999999999999999999999999986
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.9e-10 Score=121.04 Aligned_cols=226 Identities=26% Similarity=0.257 Sum_probs=126.1
Q ss_pred hcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeE
Q 040297 362 LGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVT 441 (773)
Q Consensus 362 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 441 (773)
+..+.+|+.|++.+|.+.... ..+..+++|+.|++++|.|+.. ...-.++.|+.|++++|.++... .+..++.|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDIS--GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhcc--CCccchhhhc
Confidence 344445555555555544221 1134455555555555555422 11222333555555555554332 2333566777
Q ss_pred EeCCCCccccccc-hhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCC
Q 040297 442 LDLSYNRFHGSIP-NWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPP 520 (773)
Q Consensus 442 L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~ 520 (773)
+++++|++...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++..-+..
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~---------------- 227 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLN---------------- 227 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcc----------------
Confidence 7777777664333 1 45667777777777777522 23344444555566666664211100
Q ss_pred CccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccc--cccEEecccCcCcccCChhhhccCCCCeEeC
Q 040297 521 TSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILT--SMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598 (773)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 598 (773)
.+. .|+.+++++|++. .++..+..+..+..|++
T Consensus 228 --------------------------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 228 --------------------------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDL 262 (414)
T ss_pred --------------------------------------------cchhHHHHHHhcccCccc-cccccccccccccccch
Confidence 011 2677888888887 45466677788888888
Q ss_pred CCCcCCCCCccccccCccCCeeeCccccCcc---cCCcc-cccCCCCCEEEccCCcccccCCC
Q 040297 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHG---KIPSQ-LTVLNTLAVFKVAYNNLSGKIPD 657 (773)
Q Consensus 599 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~---~~p~~-l~~l~~L~~L~ls~N~l~~~~p~ 657 (773)
++|++...- .+...+.+..+..+.|.+.. ..... ......+....+.+|......+.
T Consensus 263 ~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 263 SSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred hhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 888887332 35566777778888887662 22221 45667778888888887766653
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.2e-09 Score=120.64 Aligned_cols=107 Identities=30% Similarity=0.354 Sum_probs=53.9
Q ss_pred CCCCCEEEccCCc--CccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCc
Q 040297 195 NTNLETLLLANNS--LFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 272 (773)
Q Consensus 195 l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 272 (773)
++.|++|-+..|. +.......|..++.|++|||++|.--+.+|..++. +-+|++|+++++.+. .+|..+++++.|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 4455555555553 32222233445555555555555433455555554 445555555555555 4555555555555
Q ss_pred EEEeecccCCCccchhHhhcCCCccEEEcccC
Q 040297 273 RLDISYNQLTGEIPERMATGCFLLEILALSNN 304 (773)
Q Consensus 273 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 304 (773)
+|++..+.-...+ ..+...+.+|++|.+...
T Consensus 622 ~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccc-cchhhhcccccEEEeecc
Confidence 5555555433222 222233555555555443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-09 Score=118.33 Aligned_cols=241 Identities=25% Similarity=0.230 Sum_probs=147.5
Q ss_pred CCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEe
Q 040297 364 NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLD 443 (773)
Q Consensus 364 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 443 (773)
.+..++.+.+..|.+.. +-..+..+.+|+.+++.+|.+.......-.+++|++|++++|.|+...+ +..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhe
Confidence 44556666677776653 3344677788888888888887544433446777777777777766543 34455577777
Q ss_pred CCCCccccccchhhhcCCCCcEEEccCccccccCc-ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCc
Q 040297 444 LSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP-VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTS 522 (773)
Q Consensus 444 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~ 522 (773)
+++|.|... ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.......
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~------------------ 205 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD------------------ 205 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH------------------
Confidence 777777632 234456777777777777764433 2 456667777777777664211100
Q ss_pred cccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccC--CCCeEeCCC
Q 040297 523 IWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLT--RIHALNLSH 600 (773)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~ 600 (773)
.+..+..+++..|.++-..+ +..+. .|+.+++++
T Consensus 206 ------------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 206 ------------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred ------------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhccc
Confidence 01234445777777763222 22223 378888888
Q ss_pred CcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccccc---CCCC-CcccccCCcCcccCCCC
Q 040297 601 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGK---IPDR-VAQFSTFEEDSYEGNPF 675 (773)
Q Consensus 601 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~---~p~~-~~~~~~l~~~~l~~Np~ 675 (773)
|.+. ..+..+..+..++.||+++|++...- .+.....+..+....|.+... .+.. .....++....+.+||.
T Consensus 242 n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 242 NRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred Cccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 8888 45566778888888888888876432 344555666677777766522 1110 23344555566666653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-10 Score=107.40 Aligned_cols=179 Identities=21% Similarity=0.165 Sum_probs=105.0
Q ss_pred CCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeCcchhhccCCCcccccccCccccc
Q 040297 41 NLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLF 120 (773)
Q Consensus 41 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~ 120 (773)
+|++||||...++...+...+..|.+|+.|.+.++++.+.|.. .+++-.+|+.|+++ .++-++.......+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnls-------m~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLS-------MCSGFTENALQLLLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccc-------cccccchhHHHHHHH
Confidence 5899999988887665667788889999999999999887776 78888999999988 666555433333467
Q ss_pred CCCCCcEEecccccccccccCCCCCC--ccccEEEccCCCCC---CCcChhhcCCCCCCEEECCCCCCccc-cchhHhhc
Q 040297 121 NLSKLKTFDGEIWAETESHYNSVTPK--FQLTSISLSGYIDG---GTFPKFLYHQHDLKNADLSHLNLSGN-FPNWLVEN 194 (773)
Q Consensus 121 ~l~~L~~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~L~~~~l~~~-~~~~~~~~ 194 (773)
+|+.|..|++++.............+ .++..|+++|+... ..+......|++|..|||+.+..-.. .... +-.
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~k 336 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFK 336 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHh
Confidence 77777777777443222212211111 16677777765321 11122233455666666665432211 1112 234
Q ss_pred CCCCCEEEccCCcCccCCccC---ccCCCCcCEEEccCC
Q 040297 195 NTNLETLLLANNSLFGSFRMP---IHSYQKLAILDVSKN 230 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~Ls~n 230 (773)
++.|++|.++.|. +++|.. +...|.|.+||+.++
T Consensus 337 f~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 5556666665553 233332 234455555555543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6e-08 Score=112.56 Aligned_cols=203 Identities=21% Similarity=0.198 Sum_probs=132.0
Q ss_pred cCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCc--CccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCC
Q 040297 194 NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNF--FQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 271 (773)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 271 (773)
+....+...+-+|.+... +.. ..+++|++|-+.+|. +. .++..+|..+|.|++|||++|.--+.+|..++++-+|
T Consensus 521 ~~~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 345677777777766332 222 234579999998886 44 7788888889999999999887777899999999999
Q ss_pred cEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCC--ccccccccCCCCCCeeeC
Q 040297 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT--GEISDSLSNCRLLAGLYL 349 (773)
Q Consensus 272 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L 349 (773)
++|++++..+. .+|..+.. +..|.+|++..+.-....+.....+++|++|.+...... ...-..+..+.+|+.+..
T Consensus 598 ryL~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hcccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99999999998 89988865 889999999988766555666666899999988765422 112223344445554444
Q ss_pred cCCcCCCCcchhhcCCCCCc----EEEcccCcCCCCccccccCCCCCcEEEccCCCCCC
Q 040297 350 SDNHLSGRIPRWLGNLSALE----DIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFG 404 (773)
Q Consensus 350 ~~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 404 (773)
..... .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+..
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 32222 0111122222222 2222222222 234456677777788777777653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-08 Score=97.90 Aligned_cols=178 Identities=21% Similarity=0.160 Sum_probs=91.1
Q ss_pred CCCEEEccCCcCccCC-ccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCc-cCcc-CchhhhCCCCCcE
Q 040297 197 NLETLLLANNSLFGSF-RMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNA-FNGS-IPSSFADMKMLER 273 (773)
Q Consensus 197 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~ 273 (773)
.|++|||++..|+... ..-+..|.+|+.|.+.++++.+.+...+.. -.+|+.|+|+.+. ++.. ..--+.+|+.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4666666655543211 112345566666666666665555555444 3466666666543 2211 1112456666666
Q ss_pred EEeecccCCCccchhHh-hcCCCccEEEcccCcCC---CcCcccccCCCCCcEEEcccccC-CccccccccCCCCCCeee
Q 040297 274 LDISYNQLTGEIPERMA-TGCFLLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNNF-TGEISDSLSNCRLLAGLY 348 (773)
Q Consensus 274 L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~ 348 (773)
|+++.+.+.......+. .--++|+.|+++++.-. ..+..-...+++|..|||++|.. +......|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 66666655433222211 11245666666654311 11111123567777777776543 322334456667777777
Q ss_pred CcCCcCCCCcch---hhcCCCCCcEEEcccCc
Q 040297 349 LSDNHLSGRIPR---WLGNLSALEDIRMSNNN 377 (773)
Q Consensus 349 L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~ 377 (773)
++.|.. .+|. .+...++|.+|++.++-
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 776653 3343 34556777777776653
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-08 Score=109.15 Aligned_cols=109 Identities=28% Similarity=0.371 Sum_probs=84.9
Q ss_pred ccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCcc-ccccCccCCeeeCccccCcccCCcccccCCCCCE
Q 040297 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAV 643 (773)
Q Consensus 565 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 643 (773)
.++.++.|||++|+++... .+..+..|+.|||++|.++ .+|. ....+. |+.|.+++|.++.. ..+.+|.+|+-
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhc
Confidence 3678899999999998433 7889999999999999999 5554 233444 99999999998743 35688999999
Q ss_pred EEccCCcccccCCC-CCcccccCCcCcccCCCCCCCC
Q 040297 644 FKVAYNNLSGKIPD-RVAQFSTFEEDSYEGNPFLCGW 679 (773)
Q Consensus 644 L~ls~N~l~~~~p~-~~~~~~~l~~~~l~~Np~lC~~ 679 (773)
||+++|-|++.-.- .+..+..|..+.++|||.-|..
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99999988763221 1234567788899999998853
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-08 Score=106.15 Aligned_cols=126 Identities=29% Similarity=0.225 Sum_probs=67.0
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEc
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQL 325 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 325 (773)
.|.+.+.++|.+. .+..++.-++.|+.|||++|+++ .+. ....++.|++|||++|.+..+.--....+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 4555556666655 34445555566666666666665 333 223466666666666666543322222333 666666
Q ss_pred ccccCCccccccccCCCCCCeeeCcCCcCCCCcc-hhhcCCCCCcEEEcccCcC
Q 040297 326 DGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP-RWLGNLSALEDIRMSNNNL 378 (773)
Q Consensus 326 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l 378 (773)
++|.++.. ..+.++++|+.||+++|-+.+.-. ..++.+..|+.|.|.+|.+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66665522 234556666666666665553211 1234455566666666654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.3e-08 Score=81.67 Aligned_cols=59 Identities=22% Similarity=0.445 Sum_probs=31.8
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
.++.|+|++|+|+ .+|.++..++.|+.||++.|.+. ..|..+..|.+|-.||.-+|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 4445555555555 45555555555555555555555 44455555555555555555544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.6e-07 Score=88.11 Aligned_cols=223 Identities=16% Similarity=0.135 Sum_probs=112.0
Q ss_pred CCcccccCCCCCCCCEEeCCCCCCccccCc-hhh-cCCCCCCEEeCCCCCCCCC-ccchhhhcCCCCcEEECCCcccccc
Q 040297 4 GSKVLQSIGSLPSLKTLYLSYTNFTGTVVN-QEL-HNFTNLEELILDKSDLHVS-QLLSSIASFTSLKYLSMQDSVFKGA 80 (773)
Q Consensus 4 ~~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~-~~~-~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~ 80 (773)
+|..+-.++....+..|.+.++.|. .+-. ..| ..+++++.|||.+|.++.= ++...+.+++.|++|+++.|++...
T Consensus 34 ~g~s~~~v~s~ra~ellvln~~~id-~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 34 AGLSYLGVSSLRALELLVLNGSIID-NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred cccceeeeccccchhhheecCCCCC-cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 3444555555566666777666665 2211 123 3567888888888887742 2445567788888888888887755
Q ss_pred cChhhh-cCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCC
Q 040297 81 LHGQDF-RKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYID 159 (773)
Q Consensus 81 i~~~~~-~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 159 (773)
|.. . ..+.+|+.|-|. + ..+.-......+.++++++.++.+.. +++.+.+..+-.
T Consensus 113 I~~--lp~p~~nl~~lVLN-------g-T~L~w~~~~s~l~~lP~vtelHmS~N--------------~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 113 IKS--LPLPLKNLRVLVLN-------G-TGLSWTQSTSSLDDLPKVTELHMSDN--------------SLRQLNLDDNCI 168 (418)
T ss_pred ccc--CcccccceEEEEEc-------C-CCCChhhhhhhhhcchhhhhhhhccc--------------hhhhhccccccc
Confidence 442 2 345677777664 3 33332223334555665555544411 122222222111
Q ss_pred CCCcChhhcCCCCCCEEECCCCCCcccc-chhHhhcCCCCCEEEccCCcCccCCc-cCccCCCCcCEEEccCCcCccCCc
Q 040297 160 GGTFPKFLYHQHDLKNADLSHLNLSGNF-PNWLVENNTNLETLLLANNSLFGSFR-MPIHSYQKLAILDVSKNFFQGHIP 237 (773)
Q Consensus 160 ~~~~~~~l~~~~~L~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~ 237 (773)
.... +.+.+++...|...--. -..+..-.|++..+.+..|.+..... ..+..++.+..|+|+.|++...-.
T Consensus 169 e~~s-------~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas 241 (418)
T KOG2982|consen 169 EDWS-------TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS 241 (418)
T ss_pred cccc-------hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH
Confidence 1100 11222222222111000 00011234666777777766643322 234445555666777776653333
Q ss_pred hhHhhCCCCCcEEEccCCccC
Q 040297 238 VEIGTYLPGLMDLNLSRNAFN 258 (773)
Q Consensus 238 ~~~~~~l~~L~~L~L~~n~l~ 258 (773)
......+++|..|.++++.+.
T Consensus 242 vD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 242 VDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred HHHHcCCchhheeeccCCccc
Confidence 333344667777777766654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-06 Score=83.47 Aligned_cols=143 Identities=24% Similarity=0.202 Sum_probs=78.4
Q ss_pred hhhcCCCCCCEEECCCCCCccccchh---HhhcCCCCCEEEccCCcCccCCc-------------cCccCCCCcCEEEcc
Q 040297 165 KFLYHQHDLKNADLSHLNLSGNFPNW---LVENNTNLETLLLANNSLFGSFR-------------MPIHSYQKLAILDVS 228 (773)
Q Consensus 165 ~~l~~~~~L~~L~L~~~~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~Ls 228 (773)
..+.+|++|+.++|+.|.+....|+. +++.-+.|++|.+++|.+.-... .....-|.|++.+..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 45667788888888888877666543 23556778888888886521111 011234667777777
Q ss_pred CCcCccCCchhH----hhCCCCCcEEEccCCccCccCc-----hhhhCCCCCcEEEeecccCCCccch---hHhhcCCCc
Q 040297 229 KNFFQGHIPVEI----GTYLPGLMDLNLSRNAFNGSIP-----SSFADMKMLERLDISYNQLTGEIPE---RMATGCFLL 296 (773)
Q Consensus 229 ~n~l~~~~~~~~----~~~l~~L~~L~L~~n~l~~~~p-----~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L 296 (773)
.|++. ..+... +..-..|+++.+..|.|...-. ..+..+.+|+.||+..|.++-.-.. ......+.|
T Consensus 166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 77765 333221 1111367777777776653211 1234456677777777766521111 111223345
Q ss_pred cEEEcccCcCCC
Q 040297 297 EILALSNNNLQG 308 (773)
Q Consensus 297 ~~L~L~~n~l~~ 308 (773)
+.|.+..|-++.
T Consensus 245 rEL~lnDClls~ 256 (388)
T COG5238 245 RELRLNDCLLSN 256 (388)
T ss_pred hhccccchhhcc
Confidence 556665555543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.3e-07 Score=76.41 Aligned_cols=84 Identities=26% Similarity=0.446 Sum_probs=43.5
Q ss_pred CCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEE
Q 040297 220 QKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEIL 299 (773)
Q Consensus 220 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 299 (773)
..|+..+|++|.+. .+|..+...+|.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..++. +.++..|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML 128 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence 34444555555555 445554444455555555555555 34445555555555555555555 44544443 4444444
Q ss_pred EcccCcCC
Q 040297 300 ALSNNNLQ 307 (773)
Q Consensus 300 ~L~~n~l~ 307 (773)
+..+|.+.
T Consensus 129 ds~~na~~ 136 (177)
T KOG4579|consen 129 DSPENARA 136 (177)
T ss_pred cCCCCccc
Confidence 44444443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.7e-06 Score=79.50 Aligned_cols=88 Identities=27% Similarity=0.294 Sum_probs=41.1
Q ss_pred CCCCcEEEeecccCCCccchhH----hhcCCCccEEEcccCcCCCc-----CcccccCCCCCcEEEcccccCCcc----c
Q 040297 268 MKMLERLDISYNQLTGEIPERM----ATGCFLLEILALSNNNLQGH-----IFSKKFNLTNLMRLQLDGNNFTGE----I 334 (773)
Q Consensus 268 l~~L~~L~Ls~n~l~~~~~~~~----~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~ 334 (773)
-|.|++.....|++. ..+... +..-..|+.+.+..|.|.-. ..-.++.+.+|+.||+.+|-++.. +
T Consensus 156 kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 156 KPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 345555555555554 222211 11123455555555554321 011223455666666666655421 2
Q ss_pred cccccCCCCCCeeeCcCCcCCC
Q 040297 335 SDSLSNCRLLAGLYLSDNHLSG 356 (773)
Q Consensus 335 ~~~l~~l~~L~~L~L~~n~l~~ 356 (773)
..++..++.|+.|.+..|-++.
T Consensus 235 a~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHhcccchhhhccccchhhcc
Confidence 2334444556666666665554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.2e-06 Score=88.79 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCCEEeCCCCCCccccCchh-hcCCCCCCEEeCCCCCCCCCccchh-hhcCCCCcEEECCCcc-cccccChhhhcCCCC
Q 040297 15 PSLKTLYLSYTNFTGTVVNQE-LHNFTNLEELILDKSDLHVSQLLSS-IASFTSLKYLSMQDSV-FKGALHGQDFRKFKN 91 (773)
Q Consensus 15 ~~L~~L~Ls~n~l~~~i~~~~-~~~l~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L~~L~l~~n~-~~~~i~~~~~~~l~~ 91 (773)
..|+.|.+.++.=.+.-+-.+ -.+++++++|++.++.......-.. -..+++|++|++..|. ++...-......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 368888998886443322223 4678999999998886322111122 3458999999999863 443222223456899
Q ss_pred CcEEeCcc
Q 040297 92 LEHLDMGW 99 (773)
Q Consensus 92 L~~L~Ls~ 99 (773)
|++|+++|
T Consensus 218 L~~lNlSw 225 (483)
T KOG4341|consen 218 LKYLNLSW 225 (483)
T ss_pred HHHhhhcc
Confidence 99999984
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.2e-06 Score=57.01 Aligned_cols=36 Identities=39% Similarity=0.671 Sum_probs=15.3
Q ss_pred CCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc
Q 040297 592 RIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 592 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.1e-05 Score=78.13 Aligned_cols=205 Identities=18% Similarity=0.115 Sum_probs=129.2
Q ss_pred CCCCCCEEECCCCCCcccc-chhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCC
Q 040297 169 HQHDLKNADLSHLNLSGNF-PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL 247 (773)
Q Consensus 169 ~~~~L~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 247 (773)
.++.++.+||.+|.++.-- -..+.+++|.|+.|+++.|.+...+..--....+|++|-|.+..+...-...+...+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4677888999999887531 123457899999999999988655432213567889999988877644444555557888
Q ss_pred cEEEccCCccCcc--CchhhhC-CCCCcEEEeecccCCC-ccchhHhhcCCCccEEEcccCcCCCcCc-ccccCCCCCcE
Q 040297 248 MDLNLSRNAFNGS--IPSSFAD-MKMLERLDISYNQLTG-EIPERMATGCFLLEILALSNNNLQGHIF-SKKFNLTNLMR 322 (773)
Q Consensus 248 ~~L~L~~n~l~~~--~p~~~~~-l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 322 (773)
++|.++.|++... ..+.... -+.+++|.+..|...- .-...+..-++++..+.+..|.+..... ..+..++.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 8888888854321 1111111 1245555554543210 0001122346778888888887765432 23345677778
Q ss_pred EEcccccCCcc-ccccccCCCCCCeeeCcCCcCCCCcch------hhcCCCCCcEEEc
Q 040297 323 LQLDGNNFTGE-ISDSLSNCRLLAGLYLSDNHLSGRIPR------WLGNLSALEDIRM 373 (773)
Q Consensus 323 L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L 373 (773)
|.|+.++|..- .-+++.+++.|..|.++++++...... .++.+++++.|+=
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 88988888632 225678889999999999987643321 3466778887753
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.7e-05 Score=54.87 Aligned_cols=38 Identities=32% Similarity=0.642 Sum_probs=32.7
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCC
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG 605 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 605 (773)
++|++|++++|+|+ .+|..++++++|++|++++|+|+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 37899999999999 677789999999999999999983
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.8e-06 Score=93.79 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=94.0
Q ss_pred CCCCEEeCCCCCC-ccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCc
Q 040297 15 PSLKTLYLSYTNF-TGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLE 93 (773)
Q Consensus 15 ~~L~~L~Ls~n~l-~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~ 93 (773)
.+|++||+++... ....+..--..||+|++|.+++-.+..........++++|+.||+|++.++ .+ ..++++++||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence 4688888887632 222332223468888888888777765544555677888888888888887 33 3688888888
Q ss_pred EEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCC
Q 040297 94 HLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDL 173 (773)
Q Consensus 94 ~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 173 (773)
.|.+. + -.+........+.+|++|+.||.|........ ++ ....-++-..+++|
T Consensus 199 ~L~mr-------n-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--------~i----------i~qYlec~~~LpeL 252 (699)
T KOG3665|consen 199 VLSMR-------N-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDT--------KI----------IEQYLECGMVLPEL 252 (699)
T ss_pred HHhcc-------C-CCCCchhhHHHHhcccCCCeeeccccccccch--------HH----------HHHHHHhcccCccc
Confidence 88875 2 22222233345667777777777732211100 00 00011222345677
Q ss_pred CEEECCCCCCccccchhHhhcCCCCCEEE
Q 040297 174 KNADLSHLNLSGNFPNWLVENNTNLETLL 202 (773)
Q Consensus 174 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~ 202 (773)
+.||.++.++...+-+.+...-++|+.+.
T Consensus 253 rfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 253 RFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred cEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 77777777776655555544445555443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.1e-05 Score=78.65 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=17.5
Q ss_pred CCCCeEeCCCCcCCCCCccccccCccCCeeeCccc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 625 (773)
++|++|++++|... ..|+.+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666654 3333332 46666666655
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=2e-06 Score=87.19 Aligned_cols=285 Identities=19% Similarity=0.111 Sum_probs=159.8
Q ss_pred cCCCCCCCCEEeCCCCC-CccccCchhh-cCCCCCCEEeCCCC-CCCCCccchhhhcCCCCcEEECCCcc-cccccChhh
Q 040297 10 SIGSLPSLKTLYLSYTN-FTGTVVNQEL-HNFTNLEELILDKS-DLHVSQLLSSIASFTSLKYLSMQDSV-FKGALHGQD 85 (773)
Q Consensus 10 ~~~~l~~L~~L~Ls~n~-l~~~i~~~~~-~~l~~L~~L~Ls~n-~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~i~~~~ 85 (773)
.-.+++++++|++.++. ++ ...-.++ ..|++|++|+|..| .++...+..-...+++|++++++.+. +++.--..-
T Consensus 159 ~~~~CpnIehL~l~gc~~iT-d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKIT-DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HhhhCCchhhhhhhcceecc-HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 34567899999999885 33 2111122 46899999999884 34433222344568999999999984 444211123
Q ss_pred hcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccc-cccc-cccCCCCCCccccEEEccCCCCCCCc
Q 040297 86 FRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIW-AETE-SHYNSVTPKFQLTSISLSGYIDGGTF 163 (773)
Q Consensus 86 ~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~ 163 (773)
+..+..++.+.+. +|-......-...=..+..+..+++... ..++ ..+..-..-..++.+..+++...+..
T Consensus 238 ~rG~~~l~~~~~k-------GC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~ 310 (483)
T KOG4341|consen 238 QRGCKELEKLSLK-------GCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE 310 (483)
T ss_pred hccchhhhhhhhc-------ccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH
Confidence 4566777777655 3322221110000011112222221100 0000 00011111226788888887654432
Q ss_pred C--hhhcCCCCCCEEECCCCC-CccccchhHhhcCCCCCEEEccCCcCccC--CccCccCCCCcCEEEccCCcCccCCc-
Q 040297 164 P--KFLYHQHDLKNADLSHLN-LSGNFPNWLVENNTNLETLLLANNSLFGS--FRMPIHSYQKLAILDVSKNFFQGHIP- 237 (773)
Q Consensus 164 ~--~~l~~~~~L~~L~L~~~~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~- 237 (773)
+ .--.++++|+.+.++.++ |++.-...+..+++.|+.+++..+..... +...-.+++.|+++.++++.......
T Consensus 311 ~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi 390 (483)
T KOG4341|consen 311 VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI 390 (483)
T ss_pred HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence 2 223467899999999886 44333334446788999999988754221 22223468899999999886431110
Q ss_pred ---hhHhhCCCCCcEEEccCCccC-ccCchhhhCCCCCcEEEeecccCCCcc-chhHhhcCCCccEEEcc
Q 040297 238 ---VEIGTYLPGLMDLNLSRNAFN-GSIPSSFADMKMLERLDISYNQLTGEI-PERMATGCFLLEILALS 302 (773)
Q Consensus 238 ---~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~ 302 (773)
.........++.+.|+++... ...-..+..+++|+.+++-.++-...- ...+...+++++...+.
T Consensus 391 ~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 391 RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 111123568899999998754 233345778899999999887632122 22333457777765543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=8e-05 Score=66.44 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=37.4
Q ss_pred HhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCC
Q 040297 191 LVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 270 (773)
Q Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 270 (773)
.|.++++|+.+.+.. .+.......|..+++|+.+++..+ +. .++...+..+++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 344455555555543 233333344445545555555443 33 34444444444455555543 222233334444555
Q ss_pred CcEEEeecccCCCccchhHhhcCCCccEEEc
Q 040297 271 LERLDISYNQLTGEIPERMATGCFLLEILAL 301 (773)
Q Consensus 271 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 301 (773)
|+.+++..+ +. .++...+..+ .++.+.+
T Consensus 83 l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 83 LKNIDIPSN-IT-EIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp ECEEEETTT--B-EEHTTTTTT--T--EEE-
T ss_pred ccccccCcc-cc-EEchhhhcCC-CceEEEE
Confidence 555555433 33 3444444333 4444443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.6e-05 Score=68.56 Aligned_cols=85 Identities=24% Similarity=0.242 Sum_probs=45.2
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcC-cccccCCCCCcE
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI-FSKKFNLTNLMR 322 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 322 (773)
..+...+||++|.+.. -+.|..+++|..|.+.+|+|+ .|...+...+++|+.|.+.+|.+.... -..+..+|.|++
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 4456666777766642 223556666666666666666 555555544555566666555554211 112234445555
Q ss_pred EEcccccCC
Q 040297 323 LQLDGNNFT 331 (773)
Q Consensus 323 L~L~~n~l~ 331 (773)
|.+-+|.++
T Consensus 118 Ltll~Npv~ 126 (233)
T KOG1644|consen 118 LTLLGNPVE 126 (233)
T ss_pred eeecCCchh
Confidence 555554443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=65.05 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=18.1
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEc
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 301 (773)
+++|+.+.+.. .+......+|.++++|+.+++..+ +. .++...+..+.+++.+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITF 65 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccc
Confidence 34444444432 233333334444444444444432 33 344444443434444444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=4.6e-05 Score=86.60 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=83.4
Q ss_pred cccEEEccCCCCC-CCcChhhc-CCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEE
Q 040297 148 QLTSISLSGYIDG-GTFPKFLY-HQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAIL 225 (773)
Q Consensus 148 ~L~~L~l~~~~~~-~~~~~~l~-~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 225 (773)
+|++|+++|.... ..+|..++ .+|.|++|.+.+-.+...--..++.++|+|+.||+|+..++.. ..++.+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 7777777765432 22444444 3577777777776664332233456677777777777776543 456677777777
Q ss_pred EccCCcCcc-CCchhHhhCCCCCcEEEccCCccCccC--c----hhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE
Q 040297 226 DVSKNFFQG-HIPVEIGTYLPGLMDLNLSRNAFNGSI--P----SSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298 (773)
Q Consensus 226 ~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~--p----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 298 (773)
.+.+-.+.. ..-..+|. +++|+.||+|........ . +.-..+|+|+.||.|++.+.+.+-+.+...-++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 776655542 12234554 677777777765543211 1 112235667777776666654444444433344443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00031 Score=73.51 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=25.1
Q ss_pred CCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCC
Q 040297 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 255 (773)
+.++++|++++|.+... | . -.++|++|.+++|.--..+|..+ .++|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 55666666666655332 2 1 11245666665532211334322 134555555555
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00024 Score=65.36 Aligned_cols=83 Identities=25% Similarity=0.306 Sum_probs=59.4
Q ss_pred ceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccC-cccccCCCCCCEEEc
Q 040297 414 FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI-PVQLCELKEVRLIDL 492 (773)
Q Consensus 414 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 492 (773)
....+|+++|.+... ..|..++.|.+|.+++|+|+.+.|..-..+++|+.|.|.+|.|.... -..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 445566666665433 34667788888888888888776766666788889999888876321 134667888888888
Q ss_pred cCCcCC
Q 040297 493 SHNNLS 498 (773)
Q Consensus 493 ~~N~l~ 498 (773)
-+|++.
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 888775
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00033 Score=67.42 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=65.1
Q ss_pred CCCcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCC--CCCCCccchhhhcCCCCcEEECCCccccc-
Q 040297 3 DGSKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKS--DLHVSQLLSSIASFTSLKYLSMQDSVFKG- 79 (773)
Q Consensus 3 ~~~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n--~~~~~~~~~~l~~l~~L~~L~l~~n~~~~- 79 (773)
.+|.+..-.-.+..|+.|++.+..++ ++. .|=.|++|++|++|.| .+.+. ++.-...+++|++|++++|+++.
T Consensus 31 ~~g~~~gl~d~~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~~l 106 (260)
T KOG2739|consen 31 GAGKLGGLTDEFVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIKDL 106 (260)
T ss_pred cCCCcccccccccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCccccc
Confidence 34566666777788888888888777 443 5667889999999999 45444 55556667999999999998873
Q ss_pred -ccChhhhcCCCCCcEEeCc
Q 040297 80 -ALHGQDFRKFKNLEHLDMG 98 (773)
Q Consensus 80 -~i~~~~~~~l~~L~~L~Ls 98 (773)
+++ ....+.+|..|++.
T Consensus 107 stl~--pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 107 STLR--PLKELENLKSLDLF 124 (260)
T ss_pred cccc--hhhhhcchhhhhcc
Confidence 222 35667777788876
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00027 Score=79.21 Aligned_cols=112 Identities=25% Similarity=0.180 Sum_probs=48.4
Q ss_pred cCCCCCEEEccCCcCccC--CccCccCCCCcCEEEccCC-cCccCCc---hhHhhCCCCCcEEEccCCc-cCccCchhhh
Q 040297 194 NNTNLETLLLANNSLFGS--FRMPIHSYQKLAILDVSKN-FFQGHIP---VEIGTYLPGLMDLNLSRNA-FNGSIPSSFA 266 (773)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~ 266 (773)
.++.|+.|.+..+.-... .......++.|+.|+++++ ......+ ......+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 345555555555422111 1122334555555555542 1110111 1222334556666666555 3333222332
Q ss_pred C-CCCCcEEEeeccc-CCCccchhHhhcCCCccEEEcccCc
Q 040297 267 D-MKMLERLDISYNQ-LTGEIPERMATGCFLLEILALSNNN 305 (773)
Q Consensus 267 ~-l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~ 305 (773)
. +++|++|.+.++. +++.--..+...++.|++|+++++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2 5556665555444 3433333344445555555555444
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00089 Score=64.54 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=66.5
Q ss_pred ccCCCCCCCCEEeCCCC--CCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccC--hh
Q 040297 9 QSIGSLPSLKTLYLSYT--NFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALH--GQ 84 (773)
Q Consensus 9 ~~~~~l~~L~~L~Ls~n--~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~--~~ 84 (773)
..|..|++|+.|++|.| .+++.++. ....+++|++|+||+|+++..+--..+..+.+|..||+.+|.-+.--. ..
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHH
Confidence 45677889999999999 66655553 456779999999999999854334557778899999999997664111 13
Q ss_pred hhcCCCCCcEEeC
Q 040297 85 DFRKFKNLEHLDM 97 (773)
Q Consensus 85 ~~~~l~~L~~L~L 97 (773)
.|.-+++|++||-
T Consensus 138 vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 138 VFLLLPSLKYLDG 150 (260)
T ss_pred HHHHhhhhccccc
Confidence 5677888888883
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.00085 Score=75.13 Aligned_cols=175 Identities=23% Similarity=0.113 Sum_probs=97.7
Q ss_pred CCCCCCEEECCCCCCcccc-chhHhhcCCCCCEEEccCC-cCccCCc----cCccCCCCcCEEEccCCc-CccCCchhHh
Q 040297 169 HQHDLKNADLSHLNLSGNF-PNWLVENNTNLETLLLANN-SLFGSFR----MPIHSYQKLAILDVSKNF-FQGHIPVEIG 241 (773)
Q Consensus 169 ~~~~L~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 241 (773)
.++.|+.+.+..+.-.... -..+...++.|+.|+++++ ......+ .....+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4677888877776433221 1233457888888888863 2111111 223456788888888887 5544444555
Q ss_pred hCCCCCcEEEccCCc-cCccCc-hhhhCCCCCcEEEeecccCC-Cc-cchhHhhcCCCccEEEcccCcCCCcCcccccCC
Q 040297 242 TYLPGLMDLNLSRNA-FNGSIP-SSFADMKMLERLDISYNQLT-GE-IPERMATGCFLLEILALSNNNLQGHIFSKKFNL 317 (773)
Q Consensus 242 ~~l~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~Ls~n~l~-~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 317 (773)
..+++|++|.+.+|. ++...- .....++.|++|+++.+... +. +... ...+++++.|.+....- +
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCC----------C
Confidence 557889999877776 443222 23456788999999887643 11 2222 34477766655433221 3
Q ss_pred CCCcEEEcccccCC---ccccccccCCCCCCeeeCcCCcC
Q 040297 318 TNLMRLQLDGNNFT---GEISDSLSNCRLLAGLYLSDNHL 354 (773)
Q Consensus 318 ~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l 354 (773)
+.++.+.+...... .........++.++.+.+..+..
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 33444444332221 12222345566666666666653
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.0013 Score=63.62 Aligned_cols=79 Identities=29% Similarity=0.291 Sum_probs=34.2
Q ss_pred CCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCc-ccccCCCCCcEEEcccccCCccccc-----cccC
Q 040297 267 DMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIF-SKKFNLTNLMRLQLDGNNFTGEISD-----SLSN 340 (773)
Q Consensus 267 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~ 340 (773)
.|+.|++|.|+-|+|+ .+.. +..|.+|++|+|..|.|..... ..+.++++|+.|.|..|.-.+..+. .+.-
T Consensus 39 kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 3444444444444444 2221 1224444444444444433211 1234555666666665554443322 2334
Q ss_pred CCCCCeee
Q 040297 341 CRLLAGLY 348 (773)
Q Consensus 341 l~~L~~L~ 348 (773)
+++|++||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55666554
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.0059 Score=34.97 Aligned_cols=11 Identities=64% Similarity=0.706 Sum_probs=4.2
Q ss_pred CeEeCCCCcCC
Q 040297 594 HALNLSHNNLT 604 (773)
Q Consensus 594 ~~L~Ls~N~l~ 604 (773)
++|||++|+|+
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.0018 Score=62.63 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=69.6
Q ss_pred CCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccCh-hhhcCCCCC
Q 040297 14 LPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHG-QDFRKFKNL 92 (773)
Q Consensus 14 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~-~~~~~l~~L 92 (773)
+.+.+.|+.-++.++ .|. -...++.|++|.||-|.++.. ..+..|++|+.|.|..|.|.+ +.. .-+.++++|
T Consensus 18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchh
Confidence 556778888888887 554 456788889999988888764 567788888888888888773 221 235678888
Q ss_pred cEEeCcchhhccCCCcccccccC----cccccCCCCCcEEecc
Q 040297 93 EHLDMGWVQLILSNNHFFQIPIS----LEPLFNLSKLKTFDGE 131 (773)
Q Consensus 93 ~~L~Ls~~~l~l~~n~~~~~~~~----~~~l~~l~~L~~l~~~ 131 (773)
+.|+|. . |--.+..+ ..-+.-|++|+.||.-
T Consensus 91 r~LWL~-------E-NPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 91 RTLWLD-------E-NPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhHhhc-------c-CCcccccchhHHHHHHHHcccchhccCc
Confidence 888876 4 22222221 1225556666666654
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.0062 Score=34.86 Aligned_cols=20 Identities=50% Similarity=0.637 Sum_probs=11.3
Q ss_pred cCCeeeCccccCcccCCcccc
Q 040297 616 QIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 616 ~L~~LdLs~N~l~~~~p~~l~ 636 (773)
+|++|||++|+++ .+|+.|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666666 4554444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.0046 Score=58.27 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=72.1
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
...+.||++.|++. ..-..|+-++.|..|+++.|.+. ..|..++++..+..+++.+|..+ ..|.++..++.+++++.
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 46778999999987 55667888889999999999998 88999999999999999999887 77889999999999999
Q ss_pred cCCccc
Q 040297 647 AYNNLS 652 (773)
Q Consensus 647 s~N~l~ 652 (773)
-+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 988864
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.09 Score=27.82 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=5.6
Q ss_pred CCCEEeCCCCCCc
Q 040297 16 SLKTLYLSYTNFT 28 (773)
Q Consensus 16 ~L~~L~Ls~n~l~ 28 (773)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
|
... |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.18 Score=30.13 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=14.5
Q ss_pred CCCCCEEeCCCCCCccccCchhh
Q 040297 14 LPSLKTLYLSYTNFTGTVVNQEL 36 (773)
Q Consensus 14 l~~L~~L~Ls~n~l~~~i~~~~~ 36 (773)
+++|++|+|++|.|+ .+|++.|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777776 6665444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.18 Score=30.13 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=14.5
Q ss_pred CCCCCEEeCCCCCCccccCchhh
Q 040297 14 LPSLKTLYLSYTNFTGTVVNQEL 36 (773)
Q Consensus 14 l~~L~~L~Ls~n~l~~~i~~~~~ 36 (773)
+++|++|+|++|.|+ .+|++.|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777776 6665444
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.14 Score=27.06 Aligned_cols=13 Identities=54% Similarity=0.670 Sum_probs=4.6
Q ss_pred CCcEEEeecccCC
Q 040297 270 MLERLDISYNQLT 282 (773)
Q Consensus 270 ~L~~L~Ls~n~l~ 282 (773)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.012 Score=55.51 Aligned_cols=92 Identities=26% Similarity=0.342 Sum_probs=77.3
Q ss_pred cCC-hhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCc
Q 040297 582 EIP-TQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVA 660 (773)
Q Consensus 582 ~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 660 (773)
++| .++......+.||++.|++. -.-..|+-++.|+.||++.|++. ..|..+..+..+..+++.+|.++. .|..++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCcccc
Confidence 444 56777889999999999997 45667889999999999999997 778888888889999999998885 455578
Q ss_pred ccccCCcCcccCCCCC
Q 040297 661 QFSTFEEDSYEGNPFL 676 (773)
Q Consensus 661 ~~~~l~~~~l~~Np~l 676 (773)
+.+..+..+.-+||+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 8999999999998865
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.0065 Score=66.34 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=16.6
Q ss_pred CCCcEEEcccCcCCCCcc----ccccCCCCCcEEEccCCCC
Q 040297 366 SALEDIRMSNNNLEGPIP----IEFCQLDYLTILDLSNNAI 402 (773)
Q Consensus 366 ~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l 402 (773)
..++.++++.|.+..... ..+..++.++.+.++.|.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 344555555555543322 2223344455555555544
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.28 Score=29.30 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=13.1
Q ss_pred CCCcEEEeecccCCCccchhHh
Q 040297 269 KMLERLDISYNQLTGEIPERMA 290 (773)
Q Consensus 269 ~~L~~L~Ls~n~l~~~~~~~~~ 290 (773)
++|++|+|++|+++ .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 6665554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.28 Score=29.30 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=13.1
Q ss_pred CCCcEEEeecccCCCccchhHh
Q 040297 269 KMLERLDISYNQLTGEIPERMA 290 (773)
Q Consensus 269 ~~L~~L~Ls~n~l~~~~~~~~~ 290 (773)
++|++|+|++|+++ .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 6665554
|
|
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.12 Score=65.88 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=27.7
Q ss_pred EccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 645 KVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 645 ~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
||++|+|+...+..|..+.+|+.+++.+|||.|+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 45666666666666666677777778889999999774
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.009 Score=65.25 Aligned_cols=113 Identities=27% Similarity=0.285 Sum_probs=63.5
Q ss_pred CCCCcEEEccCCccCc----cCchh----hhCCCCCcEEEeecccCCCccch---hHhhcCCC-ccEEEcccCcCCCcC-
Q 040297 244 LPGLMDLNLSRNAFNG----SIPSS----FADMKMLERLDISYNQLTGEIPE---RMATGCFL-LEILALSNNNLQGHI- 310 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~----~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~-L~~L~L~~n~l~~~~- 310 (773)
.+.++.++++.|.+.. .++.. +....++++|+++++.++...-. ......+. +..+++..|.+....
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 4455555555555421 11222 23456677777777766521111 11112223 555777777776431
Q ss_pred ---cccccCC-CCCcEEEcccccCCcc----ccccccCCCCCCeeeCcCCcCCC
Q 040297 311 ---FSKKFNL-TNLMRLQLDGNNFTGE----ISDSLSNCRLLAGLYLSDNHLSG 356 (773)
Q Consensus 311 ---~~~~~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~ 356 (773)
...+..+ ..+++++++.|.++.. +...+..++.++.+.++.|.+..
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1223334 5678888888888744 33445667788999999888864
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.83 E-value=0.26 Score=46.04 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=46.4
Q ss_pred cccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhh-cCCCCcEEECCCcc-cccccCh
Q 040297 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIA-SFTSLKYLSMQDSV-FKGALHG 83 (773)
Q Consensus 6 ~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~l~~n~-~~~~i~~ 83 (773)
++|.....=.-++.+|-++..|.+ +--+.+.+++.++.|.+.++.--...--..++ -.++|+.|++++|. |++.--
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL- 169 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL- 169 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHH-HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-
Confidence 444443333446677777776652 21134556666666666555432210011122 24677777777763 442211
Q ss_pred hhhcCCCCCcEEeCc
Q 040297 84 QDFRKFKNLEHLDMG 98 (773)
Q Consensus 84 ~~~~~l~~L~~L~Ls 98 (773)
..+.++++|+.|.+.
T Consensus 170 ~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLY 184 (221)
T ss_pred HHHHHhhhhHHHHhc
Confidence 255666777766665
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=81.95 E-value=0.47 Score=27.65 Aligned_cols=15 Identities=53% Similarity=0.676 Sum_probs=6.3
Q ss_pred CCeeEEeCCCCcccc
Q 040297 437 PYLVTLDLSYNRFHG 451 (773)
Q Consensus 437 ~~L~~L~Ls~n~l~~ 451 (773)
++|++|++++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.32 E-value=0.21 Score=46.64 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCC-chhHhhCCCCCcEEEccCCc-cCccCchhhhCCCCCcEEE
Q 040297 198 LETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHI-PVEIGTYLPGLMDLNLSRNA-FNGSIPSSFADMKMLERLD 275 (773)
Q Consensus 198 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 275 (773)
++.++-++..|....-..+..++.++.|.+.+|.--+.. -..+....++|+.|++++|. |+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555555554443344455555555555555321111 11122234677777777663 5544445566667777776
Q ss_pred eecc
Q 040297 276 ISYN 279 (773)
Q Consensus 276 Ls~n 279 (773)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 773 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-52 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 1e-52 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-14 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-11 | ||
| 3rg1_A | 612 | Crystal Structure Of The Rp105MD-1 Complex Length = | 8e-04 | ||
| 3cig_A | 697 | Crystal Structure Of Mouse Tlr3 Ectodomain Length = | 9e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612 | Back alignment and structure |
|
| >pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 463 bits (1193), Expect = e-152
Identities = 184/715 (25%), Positives = 292/715 (40%), Gaps = 68/715 (9%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVS-QLLSSIASFTSLK 68
S+ SL L++L+LS ++ G+V +L L L ++ L L+S+ S + LK
Sbjct: 72 SLLSLTGLESLFLSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFF-QIPISLEPLFNLSKLKT 127
+L++ + K +LE LD LS N + +LK
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLD-------LSANSISGANVVGWVLSDGCGELKH 182
Query: 128 FDGEIWAETESHYNSVTPKF------QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHL 181
N ++ L + +S P FL L++ D+S
Sbjct: 183 LA--------ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN 233
Query: 182 NLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIG 241
LSG+F + T L+ L +++N G P + L L +++N F G IP +
Sbjct: 234 KLSGDFSRAIS-TCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 242 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301
L L+LS N F G++P F +LE L +S N +GE+P L++L L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 302 SNNNLQGHIFSKKFNLT-NLMRLQLDGNNFTGEISDSLSNCRL--LAGLYLSDNHLSGRI 358
S N G + NL+ +L+ L L NNF+G I +L L LYL +N +G+I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQ 417
P L N S L + +S N L G IP L L L L N + G +P +E
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 418 VHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI 477
+ L N + G++ S + + L + LS NR G IP WI L L+ L L NN G I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 478 PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLP 537
P +L + + + +DL+ N +G IPA + S + Y
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF---------IAGKRYVYIKND 581
Query: 538 TQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 597
G ++F L++ + +++ G + L+
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQL---NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 598 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
+S+N L+G IP ++ + L+L +N + G IP ++ L L + ++ N L G+IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 658 RVA-----------------------QFSTFEEDSYEGNPFLCGWPLSKSCDDNG 689
++ QF TF + NP LCG+PL + N
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 327 bits (841), Expect = e-101
Identities = 136/508 (26%), Positives = 208/508 (40%), Gaps = 40/508 (7%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
LK L +S +G V ++ NLE L + ++ + + ++L
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTG--IPFLGDCSAL 225
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFF-QIPISLEPLFNLSKLK 126
++L + + G + L+ L+ +S+N F IP L L+
Sbjct: 226 QHLDISGNKLSGDFS-RAISTCTELKLLN-------ISSNQFVGPIP-----PLPLKSLQ 272
Query: 127 TFD-------GEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLS 179
GEI + + LT + LSG G P F L++ LS
Sbjct: 273 YLSLAENKFTGEI---PDFLSGACD---TLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 180 HLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHS-YQKLAILDVSKNFFQGHIPV 238
N SG P + L+ L L+ N G + + L LD+S N F G I
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 239 EIG-TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLE 297
+ L +L L N F G IP + ++ L L +S+N L+G IP + + L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLR 445
Query: 298 ILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR 357
L L N L+G I + + L L LD N+ TGEI LSNC L + LS+N L+G
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 358 IPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQ 417
IP+W+G L L +++SNN+ G IP E L LDL+ N GT+P+ F +
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM---FKQS 562
Query: 418 VHLSKNKIEGQLESIIHDSPYLVTLDLSYN--RFHGSIPNWINILPQLSSLLLGNNYIEG 475
++ N I G+ I + + N F G +N L + + + G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 476 EIPVQLCELKEVRLIDLSHNNLSGYIPA 503
+ +D+S+N LSGYIP
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 310 bits (796), Expect = 2e-94
Identities = 133/493 (26%), Positives = 206/493 (41%), Gaps = 76/493 (15%)
Query: 177 DLSHLNLSGNFP--NWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQG 234
DLS L+ F + + + T LE+L L+N+ + GS L LD+S+N G
Sbjct: 56 DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSG 114
Query: 235 HIP--VEIGTYLPGLMDLNLSRNAFNGSIP-SSFADMKMLERLDISYNQLTGEIPERMAT 291
+ +G+ GL LN+S N + S + LE LD+S N ++G
Sbjct: 115 PVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173
Query: 292 GCFL--LEILALSNNNLQGHI-FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLY 348
L+ LA+S N + G + S NL L + NNF+ I L +C L L
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVS---RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLD 229
Query: 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
+S N LSG R + + L+ + +S+N GPIP + L L L+ N G +P
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEIPD 287
Query: 409 CFSPAF--IEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP-NWINILPQLSS 465
S A + + LS N G + L +L LS N F G +P + + + L
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 466 LLLGNNYIEGEIPVQLCELK-EVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIW 524
L L N GE+P L L + +DLS NN SG I ++
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI------------------LPNLC 389
Query: 525 CDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP 584
++ + L N TG+IP
Sbjct: 390 --------------------------------------QNPKNTLQELYLQNNGFTGKIP 411
Query: 585 TQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVF 644
+ + + +L+LS N L+GTIP++ +L ++ L L N+L G+IP +L + TL
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 645 KVAYNNLSGKIPD 657
+ +N+L+G+IP
Sbjct: 472 ILDFNDLTGEIPS 484
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 300 bits (770), Expect = 1e-90
Identities = 128/477 (26%), Positives = 203/477 (42%), Gaps = 51/477 (10%)
Query: 40 TNLEELILDKSDLH--VSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDM 97
+ + L L+ S + SS+ S T L+ L + +S G++ F+ +L LD
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLD- 106
Query: 98 GWVQLILSNNHFF-QIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSG 156
LS N + L + S LK + ++S +L
Sbjct: 107 ------LSRNSLSGPVTTLTS-LGSCSGLKFLN-------------------VSSNTLDF 140
Query: 157 YIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENN--TNLETLLLANNSLFGSFRM 214
K + L+ DLS ++SG V ++ L+ L ++ N + G
Sbjct: 141 PGKVSGGLKL----NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-- 194
Query: 215 PIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 274
+ L LDVS N F IP +G L L++S N +G + + L+ L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP-FLG-DCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 275 DISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI-FSKKFNLTNLMRLQLDGNNFTGE 333
+IS NQ G IP L+ L+L+ N G I L L L GN+F G
Sbjct: 253 NISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 334 ISDSLSNCRLLAGLYLSDNHLSGRIPR-WLGNLSALEDIRMSNNNLEGPIPIEFCQL-DY 391
+ +C LL L LS N+ SG +P L + L+ + +S N G +P L
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 392 LTILDLSNNAIFGTLPSCF---SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNR 448
L LDLS+N G + +++++L N G++ + + LV+L LS+N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 449 FHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
G+IP+ + L +L L L N +EGEIP +L +K + + L N+L+G IP+ L
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 1e-59
Identities = 103/410 (25%), Positives = 167/410 (40%), Gaps = 34/410 (8%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFT-NLEELILDKSDLHVSQLLSSI--ASFT 65
++ + LK L LS+ F+G + + L N + +L L L ++ +L ++
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGE-LPESLTNLSASLLTLDLSSNNFS-GPILPNLCQNPKN 394
Query: 66 SLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFF-QIPISLEPLFNLSK 124
+L+ L +Q++ F G + L L LS N+ IP SL L L
Sbjct: 395 TLQELYLQNNGFTGKIP-PTLSNCSELVSLH-------LSFNYLSGTIPSSLGSLSKLRD 446
Query: 125 LK----TFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSH 180
LK +GEI + L ++ L G P L + +L LS+
Sbjct: 447 LKLWLNMLEGEI-------PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 181 LNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEI 240
L+G P W+ NL L L+NNS G+ + + L LD++ N F G IP +
Sbjct: 500 NRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 241 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYN--QLTGEIPERMATGCFLLEI 298
++ N G + M + + N + G E++
Sbjct: 559 F-----KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNP 612
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRI 358
+++ GH N ++M L + N +G I + + L L L N +SG I
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
P +G+L L + +S+N L+G IP L LT +DLSNN + G +P
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 3e-19
Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 12/155 (7%)
Query: 360 RWLG---NLSALEDIRMSNNNLE---GPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPA 413
+ G + I +S+ L + L L L LSN+ I G++ A
Sbjct: 41 TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA 100
Query: 414 FIEQVHLSKNKIEGQLESIIHDS--PYLVTLDLSYNRFHGSIP-NWINILPQLSSLLLGN 470
+ + LS+N + G + ++ L L++S N + L L L L
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 471 NYIEGEIPVQLCE---LKEVRLIDLSHNNLSGYIP 502
N I G V E++ + +S N +SG +
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 570 SGIDLSCNKLT---GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 626
+ IDLS L + + + LT + +L LS++++ G++ F + SLDLS N
Sbjct: 53 TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111
Query: 627 LHGKIPS--QLTVLNTLAVFKVAYNNLSGKIP 656
L G + + L + L V+ N L
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 591 TRIHALNLSHNNLT---GTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647
++ +++LS L + ++ +L +ESL LS + ++G + +L ++
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108
Query: 648 YNNLSGKIPD 657
N+LSG +
Sbjct: 109 RNSLSGPVTT 118
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 259 bits (665), Expect = 2e-76
Identities = 128/674 (18%), Positives = 209/674 (31%), Gaps = 118/674 (17%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKY 69
+ L +L + + + + + L+ L L ++L + A T+L
Sbjct: 44 NFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTE 101
Query: 70 LSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFD 129
L + + + + F K KNL LD LS+N + L L+
Sbjct: 102 LHLMSNSIQK-IKNNPFVKQKNLITLD-------LSHNGLSSTKLGT--QVQLENLQELL 151
Query: 130 GEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNF-- 187
L++ + + N+ L L LS N
Sbjct: 152 -------------------LSNNKIQA-LKSEEL-------DIFANSSLKKLELSSNQIK 184
Query: 188 ---PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQ---KLAILDVSKNFFQGHIPVEI- 240
P L L L N L S + + L +S +
Sbjct: 185 EFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243
Query: 241 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILA 300
G L L+LS N N SFA + LE + YN + + G F + L
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLN 302
Query: 301 LSNNNLQGHIFSKKF---------NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351
L + + I L L L ++ N+ G S+ + L L LS+
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
Query: 352 NHLSGR--IPRWLGNL--SALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLP 407
+ S R +L S L + ++ N + F L +L +LDL N I L
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422
Query: 408 -SCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHG--SIPNWINILPQL 463
+ I +++LS NK + P L L L S P+ L L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482
Query: 464 SSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSI 523
+ L L NN I L L+++ ++DL HNNL L + + GP +
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNL----------ARLWKHANPGGPIYFL 532
Query: 524 WCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI 583
+ L+ + ++L N
Sbjct: 533 ----------------------------------------KGLSHLHILNLESNGFDEIP 552
Query: 584 PTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQL-TVLNTLA 642
L + ++L NNL + F+N ++SL+L NL+ L
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612
Query: 643 VFKVAYNNLSGKIP 656
+ +N
Sbjct: 613 ELDMRFNPFDCTCE 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 2e-63
Identities = 109/513 (21%), Positives = 170/513 (33%), Gaps = 48/513 (9%)
Query: 173 LKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFF 232
+ AD SHL L+ P+ L TN+ L L +N L Y +L LDV N
Sbjct: 6 HEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 233 QGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATG 292
P LP L LNL N + +FA L L + N + I
Sbjct: 62 SKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVK 119
Query: 293 CFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRL--LAGLYLS 350
L L LS+N L + L NL L L N S+ L L L LS
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179
Query: 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC---QLDYLTILDLSNNAIFGTLP 407
N + P + L + ++N L + + C + L LSN+ + T
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239
Query: 408 SCFSPAF---IEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLS 464
+ F + + LS N + P L L YN + ++ L +
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299
Query: 465 SLLLGNNY---------IEGEIPVQLCELKEVRLIDLSHNNLSGYIPAC------LVYTS 509
L L ++ + LK + +++ N++ G L Y S
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359
Query: 510 LGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQG--RILT 567
L + T+ T + T +S L
Sbjct: 360 LSNSFTSLRTLTNE--------------TFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405
Query: 568 SMSGIDLSCNKLTGEIPTQ-IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 626
+ +DL N++ E+ Q L I + LS+N +F+ + ++ L L
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465
Query: 627 LHG--KIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
L PS L L + ++ NN++ D
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 1e-47
Identities = 81/440 (18%), Positives = 139/440 (31%), Gaps = 65/440 (14%)
Query: 89 FKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQ 148
N+ L+ L++N ++P + S+L + D
Sbjct: 24 PTNITVLN-------LTHNQLRRLPAA--NFTRYSQLTSLD------------------- 55
Query: 149 LTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLETLLLA 204
+ ++S ++ L L LNL N + TNL L L
Sbjct: 56 VGFNTISK-LEPELC-------QKLPM--LKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105
Query: 205 NNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS 264
+NS+ P + L LD+S N L L +L LS N
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEE 164
Query: 265 FADMKM--LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI---FSKKFNLTN 319
L++L++S NQ+ P L L L+N L + + T+
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223
Query: 320 LMRLQLDGNNFTGEISDSLSNCRL--LAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
+ L L + + + + + L L LS N+L+ L LE + NN
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 378 LEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFI----------EQVHLSKNKIEG 427
++ L + L+L + ++ P E +++ N I G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Query: 428 QLESIIHDSPYLVTLDLSYNRF-HGSIPNWI---NILPQLSSLLLGNNYIEGEIPVQLCE 483
++ L L LS + ++ N L L L N I
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403
Query: 484 LKEVRLIDLSHNNLSGYIPA 503
L + ++DL N + +
Sbjct: 404 LGHLEVLDLGLNEIGQELTG 423
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 1e-45
Identities = 85/504 (16%), Positives = 150/504 (29%), Gaps = 99/504 (19%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
L + S++ L LS + + T F L+ +T+L
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNT----TFLGLK--------------------WTNL 250
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQI-PISLEPLFNLSKLK 126
L + + + F LE+ L N+ + SL LFN+
Sbjct: 251 TMLDLSYNNLNV-VGNDSFAWLPQLEYFF-------LEYNNIQHLFSHSLHGLFNV---- 298
Query: 127 TFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN 186
++L + +S +L
Sbjct: 299 --------------------------------------RYLNLKRSFTKQSISLASLPKI 320
Query: 187 FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE---IGTY 243
+ LE L + +N + G L L +S +F +
Sbjct: 321 DDFSF-QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L LNL++N + +F+ + LE LD+ N++ E+ + G + + LS
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439
Query: 304 NNLQGHIFSKKF-NLTNLMRLQLDGNNFTG--EISDSLSNCRLLAGLYLSDNHLSGRIPR 360
N + F + +L RL L R L L LS+N+++
Sbjct: 440 NKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 361 WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHL 420
L L LE + + +NNL + LS+ + ++L
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH---------------LHILNL 543
Query: 421 SKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQ 480
N + + D L +DL N + + N L SL L N I
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603
Query: 481 LCE-LKEVRLIDLSHNNLSGYIPA 503
+ + +D+ N +
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCES 627
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 6e-13
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 2/115 (1%)
Query: 391 YLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450
+ D S+ + +P P I ++L+ N++ + L +LD+ +N
Sbjct: 5 SHEVADCSHLKLT-QVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 451 GSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
P LP L L L +N + + + L N++
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 566 LTSMSGIDLSCNKLT--------GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQI 617
L + +DL N L G + L+ +H LNL N F +L ++
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 618 ESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVA-QFSTFEEDSYEGNPFL 676
+ +DL N L+ S +L + N ++ F E NPF
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Query: 677 C 677
C
Sbjct: 623 C 623
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 1e-59
Identities = 76/290 (26%), Positives = 114/290 (39%), Gaps = 31/290 (10%)
Query: 225 LDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGS--IPSSFADMKMLERLDIS-YNQL 281
D + G + + +L+LS IPSS A++ L L I N L
Sbjct: 31 TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 282 TGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNC 341
G IP +A L L +++ N+ G I + L+ L N +G + S+S+
Sbjct: 90 VGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 342 RLLAGLYLSDNHLSGRIPRWLGNLSAL-EDIRMSNNNLEGPIPIEFCQLDYLTILDLSNN 400
L G+ N +SG IP G+ S L + +S N L G IP F L+ L +DLS N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207
Query: 401 AIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINIL 460
+ G F G ++ + L+ N +
Sbjct: 208 MLEGDASVLF----------------GSDKN-------TQKIHLAKNSLAFDLGKVGL-S 243
Query: 461 PQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSL 510
L+ L L NN I G +P L +LK + +++S NNL G IP
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 1e-59
Identities = 71/301 (23%), Positives = 117/301 (38%), Gaps = 33/301 (10%)
Query: 175 NADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMP--IHSYQKLAILDVSK-NF 231
D + G + + L L+ +L + +P + + L L + N
Sbjct: 30 TTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88
Query: 232 FQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMAT 291
G IP I L L L ++ +G+IP + +K L LD SYN L+G +P +++
Sbjct: 89 LVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 292 GCFLLEILALSNNNLQGHIFSKKFNLTNLMR-LQLDGNNFTGEISDSLSNCRLLAGLYLS 350
L + N + G I + + L + + N TG+I + +N L A + LS
Sbjct: 148 -LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLS 205
Query: 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF 410
N L G G+ + I ++ N+L + + L LDL NN I+GTLP
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 411 SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGN 470
+ +L +L++S+N G IP L + N
Sbjct: 265 T-----------------------QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300
Query: 471 N 471
N
Sbjct: 301 N 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 7e-59
Identities = 79/357 (22%), Positives = 132/357 (36%), Gaps = 69/357 (19%)
Query: 337 SLSNCRLLA----GLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEG--PIPIEFCQLD 390
L N L+ + G + + ++ +S NL PIP L
Sbjct: 17 DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76
Query: 391 YLTILDLSN-NAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRF 449
YL L + N + G +P + L++ L L +++
Sbjct: 77 YLNFLYIGGINNLVGPIPPAIA-------KLTQ----------------LHYLYITHTNV 113
Query: 450 HGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVY-T 508
G+IP++++ + L +L N + G +P + L + I N +SG IP +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 509 SLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTS 568
L TS+ R + G +P N++
Sbjct: 174 KLF---------TSMTISRNRLTGK--IPPTFA--------------NLN---------- 198
Query: 569 MSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628
++ +DLS N L G+ G ++L+ N+L + K + LDL N ++
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257
Query: 629 GKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSC 685
G +P LT L L V++NNL G+IP F+ +Y N LCG PL +C
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL-PAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 2e-52
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 14/256 (5%)
Query: 260 SIPSSFADMKML----ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG--HIFSK 313
I + L D G + + T + + L LS NL I S
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSS 71
Query: 314 KFNLTNLMRLQL-DGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIR 372
NL L L + NN G I +++ L LY++ ++SG IP +L + L +
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 373 MSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS--PAFIEQVHLSKNKIEGQL- 429
S N L G +P L L + N I G +P + + +S+N++ G++
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 430 ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRL 489
+ + + L +DLS N G + L N + ++ ++ K +
Sbjct: 192 PTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248
Query: 490 IDLSHNNLSGYIPACL 505
+DL +N + G +P L
Sbjct: 249 LDLRNNRIYGTLPQGL 264
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 1e-31
Identities = 63/302 (20%), Positives = 103/302 (34%), Gaps = 43/302 (14%)
Query: 59 SSIASFTSLKYLSMQDSVFKGALH-GQDFRKFKNLEHLDMGWVQLILSNNHFF-QIPISL 116
+ + L + L L +G N+ IP ++
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG------GINNLVGPIPPAI 97
Query: 117 EPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNA 176
L++L +T ++SG I P FL L
Sbjct: 98 ---AKLTQLHYLY-------------------ITHTNVSGAI-----PDFLSQIKTLVTL 130
Query: 177 DLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLA-ILDVSKNFFQGH 235
D S+ LSG P + + NL + N + G+ S+ KL + +S+N G
Sbjct: 131 DFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 236 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPE-RMATGCF 294
IP L ++LSRN G F K +++ ++ N L ++ + ++
Sbjct: 190 IPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN-- 245
Query: 295 LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354
L L L NN + G + L L L + NN GEI + R Y ++ L
Sbjct: 246 -LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 355 SG 356
G
Sbjct: 305 CG 306
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 60/298 (20%), Positives = 95/298 (31%), Gaps = 93/298 (31%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKY 69
+I L L LY+++TN +G + L L L + L L SI+S +L
Sbjct: 96 AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLVG 153
Query: 70 LSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFF-QIPISLEPLFNLSKLKTF 128
++ N IP S + SKL T
Sbjct: 154 IT--------------------------------FDGNRISGAIPDS---YGSFSKLFTS 178
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFP 188
+S L+G P
Sbjct: 179 -----------------------------------------------MTISRNRLTGKIP 191
Query: 189 NWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM 248
N NL + L+ N L G + S + + ++KN + ++G L
Sbjct: 192 PTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL-SKNLN 247
Query: 249 DLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL-LEILALSNNN 305
L+L N G++P +K L L++S+N L GEIP+ G ++ A +NN
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNK 302
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 4e-58
Identities = 86/549 (15%), Positives = 159/549 (28%), Gaps = 71/549 (12%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKY 69
+IG L L+ L L + ++
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ----KQKMRMHYQKTFVDYDPR 155
Query: 70 LSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFD 129
D + + K + + Q+ +N+ + ++ L+KL+ F
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV---MRLTKLRQFY 212
Query: 130 -------GEIWAETESHYNSVTPKF------------QLTSISLSGYIDGGTFPKFLYHQ 170
E E + NS + LT + + + P FL
Sbjct: 213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA- 271
Query: 171 HDLKNADLSHLNLSGN----------FPNWLVE--NNTNLETLLLANNSLF-GSFRMPIH 217
L + +N++ N L + ++ + + N+L +
Sbjct: 272 --LPE--MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327
Query: 218 SYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDIS 277
+KL +L+ N +G +P G+ L LNL+ N + + +E L +
Sbjct: 328 KMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385
Query: 278 YNQLTGEIPERMATGCFLLEILALSNNNLQG-------HIFSKKFNLTNLMRLQLDGNNF 330
+N+L A ++ + S N + + F N+ + L N
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445
Query: 331 TGEISDSLSNCRLLAGLYLSDNHLSG-------RIPRWLGNLSALEDIRMSNNNLEG-PI 382
+ + S L+ + L N L+ N L I + N L
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505
Query: 383 PIEFCQLDYLTILDLSNNAI------FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS 436
L YL +DLS N+ + Q N+ + I
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565
Query: 437 PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNN 496
P L L + N + I P +S L + +N +C E + L ++
Sbjct: 566 PSLTQLQIGSNDIR-KVNE--KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
Query: 497 LSGYIPACL 505
I C
Sbjct: 623 TQ-DIRGCD 630
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 3e-55
Identities = 82/514 (15%), Positives = 161/514 (31%), Gaps = 62/514 (12%)
Query: 179 SHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPV 238
L++ G P + +N + L L G I +L +L + + + + +
Sbjct: 64 KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123
Query: 239 EIGTYLPGLMDL---NLSRNAFNGSIPSSFADMKM--LERLDISYNQLTGEIPERMATGC 293
+ M R + + L + I+ + I + +
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-SSRIT 182
Query: 294 FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353
+ +NN+ + LT L + + + F E
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQ 236
Query: 354 LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI---------FG 404
NL L D+ + N +P L + +++++ N +
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296
Query: 405 TLPSCFSPAFIEQVHLSKNKI-EGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQL 463
L I+ +++ N + +E+ + L L+ YN+ G +P + + +L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS-EIKL 355
Query: 464 SSLLLGNNYIEGEIPVQLCE-LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTS 522
+SL L N I IP C ++V + +HN L IP S+ ++
Sbjct: 356 ASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSV-------MSA 406
Query: 523 IWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE 582
I + P ++S I+LS N+++
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDP------------------TPFKGINVSSINLSNNQISKF 448
Query: 583 IPTQIGYLTRIHALNLSHNNLTG-------TIPTTFSNLKQIESLDLSYNLLHGKIPSQL 635
+ + ++NL N LT F N + S+DL +N L +
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDF 507
Query: 636 TVLN--TLAVFKVAYNNLSGKIPDRVAQFSTFEE 667
L ++YN+ S P + ST +
Sbjct: 508 RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 2e-54
Identities = 74/522 (14%), Positives = 156/522 (29%), Gaps = 91/522 (17%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKY 69
S+ S + L L +G V + T LE L L V++ L ++
Sbjct: 76 SLNSNGRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 70 LSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFD 129
Q H+ + + +P + S L
Sbjct: 135 DE-----------------------------QKQKMRMHYQKTFVDYDPREDFSDLIKDC 165
Query: 130 GEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPN 189
+ S I K N++
Sbjct: 166 -------------------INSDPQQKSI-----KKSSRITLKDTQIGQLSNNITF-VSK 200
Query: 190 WLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMD 249
+ T L + N+ I + + ++ + ++ L L D
Sbjct: 201 AV-MRLTKLRQFYMGNSPFVAE---NICEAWENENSEYAQQY--KTEDLKWD-NLKDLTD 253
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL--------LEILAL 301
+ + +P+ + ++ ++++ N+ + L ++I+ +
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALADAPVGEKIQIIYI 312
Query: 302 SNNNLQ-GHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPR 360
NNL+ + + + L L+ N G++ + + LA L L+ N ++
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPAN 371
Query: 361 WLGNLSALEDIRMSNNNLEG-PIPIEFCQLDYLTILDLSNNAIFGTLPSCFS--PAFI-- 415
+ G +E++ ++N L+ P + + ++ +D S N I F
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431
Query: 416 ----EQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHG-------SIPNWINILPQLS 464
++LS N+I + + L +++L N L+
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491
Query: 465 SLLLGNNYIEGEIP-VQLCELKEVRLIDLSHNNLSGYIPACL 505
S+ L N + + L + IDLS+N+ S P
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 46/336 (13%), Positives = 85/336 (25%), Gaps = 67/336 (19%)
Query: 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASF 64
L + GS L +L L+Y T + +E L + L + S
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401
Query: 65 TSLKYLSMQDSVFKGALHGQ------DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEP 118
+ + + + K N+ ++ LSNN + P L
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN-------LSNNQISKFPKEL-- 452
Query: 119 LFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADL 178
S L + + N LT I + + + + L + DL
Sbjct: 453 FSTGSPLSSINL--------MGN------MLTEIPKN---SLKDENENFKNTYLLTSIDL 495
Query: 179 SHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPV 238
L+ ++ L + L+ NS P
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSF-------------------------SKFPT 530
Query: 239 EIG-----TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGC 293
+ + N P L +L I N + + E++
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPN- 588
Query: 294 FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNN 329
+ +L + +N S L +
Sbjct: 589 --ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 17/236 (7%), Positives = 54/236 (22%), Gaps = 34/236 (14%)
Query: 441 TLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY 500
+ + + +N +++ L L G +P + +L E+ ++ L +
Sbjct: 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120
Query: 501 IPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYY 560
+ + +E + ++
Sbjct: 121 ERLFGP-KGISANMSDE------QKQKMRMHYQKTFVDYDPR------------------ 155
Query: 561 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESL 620
+ + ++ + I + + NN+T + L ++
Sbjct: 156 ---EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQF 211
Query: 621 DLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL 676
+ + + + Y + + P L
Sbjct: 212 YMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 3/89 (3%)
Query: 564 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623
+ + D N+ E P I + L + N++ N+ LD+
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIK 595
Query: 624 YNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
N S + ++ + Y+
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 6/119 (5%)
Query: 573 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG--- 629
+ + + + R+ L+L +G +P L ++E L L +
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 630 -KIPSQLTVLNTLAVFKVAYNNLSGKIPDRVA--QFSTFEEDSYEGNPFLCGWPLSKSC 685
P ++ + + + D FS +D +P S
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGY--LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623
++ IDL NKLT + L + ++LS+N+ + PT N ++ +
Sbjct: 487 TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544
Query: 624 YNL------LHGKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
+ P +T+ +L ++ N++ + +
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE 583
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 3e-56
Identities = 93/512 (18%), Positives = 165/512 (32%), Gaps = 58/512 (11%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
+ SL L TL L+ + ++L++L+ +++L S I +LK
Sbjct: 70 GAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK 127
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQI-PISLEPLFNLSKLKT 127
L++ ++ + + F NLEHLD LS+N I L L +
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLD-------LSSNKIQSIYCTDLRVLHQM----- 175
Query: 128 FDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNF 187
S+ LS P L L + S N
Sbjct: 176 ------------------PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNV 216
Query: 188 PNWLVENNTNLETLLLANNSLFGSFRM---PIHSYQKLAILDVSKN------FFQGHIPV 238
++ LE L + + + L L + + ++ I
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII- 275
Query: 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298
++ L + +L S+ + L++ + L +
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPT------LKLKSL 327
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGN--NFTGEISDSLSNCRLLAGLYLSDNHLSG 356
L+ + +G + +L +L L L N +F G S S L L LS N +
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
Query: 357 RIPRWLGNLSALEDIRMSNNNLEGPIPIE-FCQLDYLTILDLSNNAIFGTLPSCFSPAF- 414
+ L LE + ++NL+ F L L LD+S+ F+
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 415 IEQVHLSKNKIEGQL-ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYI 473
+E + ++ N + I + L LDLS + P N L L L + +N
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 474 EGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
L ++++D S N++ L
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 4e-55
Identities = 93/507 (18%), Positives = 165/507 (32%), Gaps = 56/507 (11%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKY 69
S S P L+ L LS + + + ++L LIL + + L + + +SL+
Sbjct: 47 SFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK 104
Query: 70 LSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFD 129
L ++ L K L+ L+ +++N + E NL+ L+ D
Sbjct: 105 LVAVETNLAS-LENFPIGHLKTLKELN-------VAHNLIQSFKLP-EYFSNLTNLEHLD 155
Query: 130 GEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPN 189
L+S + I + DLS ++ P
Sbjct: 156 -------------------LSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 190 WLVENNTNLETLLLANNSLFGSF-RMPIHSYQKLAILDVSKNFFQGHIPVE--IGTYLPG 246
L L L NN + + I L + + F+ +E + L G
Sbjct: 196 AF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 247 LMDLNLSRNAFN------GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILA 300
L +L + I F + + + + + F + L
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLE 310
Query: 301 LSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS--GRI 358
L N K +L L G N S + L L LS N LS G
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFKGCC 365
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLP-SCFSP-AFIE 416
+ ++L+ + +S N + + F L+ L LD ++ + S F +
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 417 QVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSI-PNWINILPQLSSLLLGNNYIEG 475
+ +S I + L L ++ N F + P+ L L+ L L +E
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 476 EIPVQLCELKEVRLIDLSHNNLSGYIP 502
P L ++++++SHNN
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDT 511
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 3e-51
Identities = 89/502 (17%), Positives = 170/502 (33%), Gaps = 49/502 (9%)
Query: 2 IDGSKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLE--ELILDKSDLHVSQLLS 59
I K+ + +L +L+ L LS + +L + L LD S ++ +
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 60 SIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPL 119
L L+++++ + + LE + + N +LE L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 120 FNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLS 179
NL+ +F+L + F ++ + L
Sbjct: 255 CNLTIE--------------------EFRLAYLDYYLDDIIDLFNCL----TNVSSFSLV 290
Query: 180 HLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239
+ + N + L L N + + S ++L +
Sbjct: 291 SVTIERVKDF---SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-- 345
Query: 240 IGTYLPGLMDLNLSRNAFN--GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLE 297
LP L L+LSRN + G S L+ LD+S+N + + G LE
Sbjct: 346 ----LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLE 399
Query: 298 ILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG 356
L ++NL+ F +L NL+ L + + + + L L ++ N
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 357 RI-PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF- 414
P L L + +S LE P F L L +L++S+N F +
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519
Query: 415 IEQVHLSKNKIEGQLESIIHDSPY-LVTLDLSYNRFHGSIPN--WINILPQLSSLLLGNN 471
++ + S N I + + P L L+L+ N F + + ++ + LL+
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 579
Query: 472 YIEGEIPVQLCELKEVRLIDLS 493
+E P + + + ++ L+
Sbjct: 580 RMECATPS---DKQGMPVLSLN 598
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 3e-49
Identities = 80/435 (18%), Positives = 143/435 (32%), Gaps = 45/435 (10%)
Query: 245 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNN 304
+L+LS N SF L+ LD+S ++ L L L+ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGN 86
Query: 305 NLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL-SGRIPRWLG 363
+Q L++L +L N + + + + L L ++ N + S ++P +
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 364 NLSALEDIRMSNNNLEGPIPIEFCQLDYLTI----LDLSNNAIFGTLPSCFSPAFIEQVH 419
NL+ LE + +S+N ++ + L + + LDLS N + P F + ++
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206
Query: 420 LSKNKIEGQL-ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSL---------LLG 469
L N + ++ I L L F L L L
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 470 NNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPAC----LVYTSLGEDYHEEGPPTSIWC 525
+Y +I L V L + + L + P
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT----- 321
Query: 526 DRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT--GEI 583
+ + + FT+ + L S+ +DLS N L+ G
Sbjct: 322 ----------------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365
Query: 584 PTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP-SQLTVLNTLA 642
T + L+LS N + T+ + F L+Q+E LD ++ L S L L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 643 VFKVAYNNLSGKIPD 657
+++ +
Sbjct: 425 YLDISHTHTRVAFNG 439
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 3e-49
Identities = 91/485 (18%), Positives = 161/485 (33%), Gaps = 46/485 (9%)
Query: 192 VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251
VE N+ + N +++P + LD+S N + + P L L+
Sbjct: 4 VEVVPNITYQCMELNF----YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLD 58
Query: 252 LSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIF 311
LSR ++ + L L ++ N + + G L+ L NL
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLEN 117
Query: 312 SKKFNLTNLMRLQLDGNNFTG-EISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALE- 369
+L L L + N ++ + SN L L LS N + L L +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 370 ---DIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF----IEQVHLSK 422
+ +S N + P F ++ L L L NN + + ++ L +
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 423 NKIEGQLESIIHDS-PYLVTLDLSYNR------FHGSIPNWINILPQLSSLLLGNNYIEG 475
+ EG LE + L L + R + I + N L +SS L + IE
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 476 EIPVQLCELKEVRLIDLSHNNLSGYIPACLV-YTSLGEDYHEEGPPTSIWCDRASVYGSP 534
+ ++L + + L L ++ G S P
Sbjct: 297 VKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-------DLP 347
Query: 535 CLPTQ--SGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTR 592
L S + + + TS+ +DLS N + + + L +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFG---------TTSLKYLDLSFNGVIT-MSSNFLGLEQ 397
Query: 593 IHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL 651
+ L+ H+NL F +L+ + LD+S+ L++L V K+A N+
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 652 SGKIP 656
Sbjct: 458 QENFL 462
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 9e-49
Identities = 91/500 (18%), Positives = 157/500 (31%), Gaps = 41/500 (8%)
Query: 176 ADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGH 235
LN P+ L + + L L+ N L S+ +L +LD+S+ Q
Sbjct: 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 236 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL 295
+ L L L L+ N +F+ + L++L L +
Sbjct: 68 EDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKT 125
Query: 296 LEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCR----LLAGLYLS 350
L+ L +++N +Q + F NLTNL L L N L L L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQ-LDYLTILDLSNNAIFGTLPSC 409
N ++ P + L + + NN + Q L L + L
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----- 239
Query: 410 FSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLG 469
K+ +EG L ++ + L LD + I + N L +SS L
Sbjct: 240 ----EGNLEKFDKSALEG-LCNLTIEEFRLAYLDYYLD----DIIDLFNCLTNVSSFSLV 290
Query: 470 NNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLV-YTSLGEDYHEEGPPTSIWCDRA 528
+ IE + ++L + + L L ++ G S +
Sbjct: 291 SVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348
Query: 529 SVY---GSPCLPTQSGPPMGKEETVQFTTKNMSY------YYQGRILTSMSGIDLSCNKL 579
+ L + T ++S+ L + +D + L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 580 TGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI-PSQLTV 637
+ L + L++SH + F+ L +E L ++ N P T
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 638 LNTLAVFKVAYNNLSGKIPD 657
L L ++ L P
Sbjct: 469 LRNLTFLDLSQCQLEQLSPT 488
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 2e-42
Identities = 83/487 (17%), Positives = 156/487 (32%), Gaps = 73/487 (14%)
Query: 41 NLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWV 100
+ + +L+ ++ ++ S K L + + + L F F L+ LD
Sbjct: 6 VVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLD---- 58
Query: 101 QLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDG 160
LS I +LS L T LT +
Sbjct: 59 ---LSRCEIQTIEDGA--YQSLSHLSTLI-------------------LTGNPIQSLA-- 92
Query: 161 GTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSY- 219
L+ NL+ + + L+ L +A+N + + Y
Sbjct: 93 ---LGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQS---FKLPEYF 145
Query: 220 ---QKLAILDVSKNFFQGHIPVEIGTYLPGL----MDLNLSRNAFNGSIPSSFADMKMLE 272
L LD+S N Q ++ L + + L+LS N N P +F +++ L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 203
Query: 273 RLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFN---LTNLMRLQLDGNN 329
+L + N + + + G LE+ L + +KF+ L L L ++
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 330 ------FTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP 383
+ +I D + ++ L + + + + N
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT 321
Query: 384 IEFCQLDYLTILDLSNNAI--FGTLPSCFSPAFIEQVHLSKNKI--EGQLESIIHDSPYL 439
++ L LT LPS +E + LS+N + +G + L
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPS------LEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQ-LCELKEVRLIDLSHNNLS 498
LDLS+N N++ L QL L ++ ++ L+ + +D+SH +
Sbjct: 376 KYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 499 GYIPACL 505
Sbjct: 435 VAFNGIF 441
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L +++ +DLS +L PT L+ + LN+SHNN + L ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Query: 626 LLHGKIPSQLTVLNT-LAVFKVAYNNLSGKIP 656
+ +L + LA + N+ +
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L+S+ + ++ N I L + L+LS L PT F++L ++ L++S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTF-EEDSYEGNPFLC 677
N LN+L V + N++ + F + + N F C
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-12
Identities = 38/253 (15%), Positives = 77/253 (30%), Gaps = 42/253 (16%)
Query: 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASF 64
+ + L L+ L ++N + NL L + + V+
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGL 444
Query: 65 TSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSK 124
+SL+ L M + F+ F + +NL LD LS Q+ + +LS
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLD-------LSQCQLEQLSPTA--FNSLSS 495
Query: 125 LKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLS 184
L+ + ++ + + L+ D S ++
Sbjct: 496 LQVLN-------------------MSHNNFFSLD-----TFPYKCLNSLQVLDYSLNHIM 531
Query: 185 GNFPNWLVENNTNLETLLLANNSLFGSFRMP--IHSYQKLAILDVSKNFFQGHIPVEIGT 242
+ L ++L L L N + + + L V + P +
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP----S 587
Query: 243 YLPG--LMDLNLS 253
G ++ LN++
Sbjct: 588 DKQGMPVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL-KQIESLDLSY 624
L+S+ +++S N L + L+ S N++ + + + L+L+
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 625 NLLHGKIPSQ--LTVLNTLAVFKVAYNNLSGKIP 656
N Q L + V + P
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 572 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGK 630
+DLS N + I R+H L L +N + + T L +E L +
Sbjct: 182 LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 631 ------IPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFS 663
S L L L + + L + D + F+
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 8e-55
Identities = 99/498 (19%), Positives = 167/498 (33%), Gaps = 44/498 (8%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKY 69
++ +LK L+ T + + LHN LE L L + + S L LK
Sbjct: 100 ALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKV 157
Query: 70 LSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFD 129
L Q++ L +D + +L L L+ N I L
Sbjct: 158 LDFQNNAIHY-LSKEDMSSLQQATNLS-----LNLNGNDIAGIEPGAFDSAVFQSLN--- 208
Query: 130 GEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPN 189
I G + D+ ++S
Sbjct: 209 -------------------FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249
Query: 190 WLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMD 249
L ++E++ L + F H + L LD++ +P + L L
Sbjct: 250 GL--CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKK 305
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGH 309
L LS N F S ++ L L I N E+ L L LS+++++
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 310 IFSKK--FNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPR-WLGNLS 366
NL++L L L N +++ C L L L+ L + + NL
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425
Query: 367 ALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF-----IEQVHLS 421
L+ + +S++ L+ F L L L+L N + + +E + LS
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK-TNSLQTLGRLEILVLS 484
Query: 422 KNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481
+ + + +DLS+NR S ++ L + L L +N+I +P L
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLL 543
Query: 482 CELKEVRLIDLSHNNLSG 499
L + R I+L N L
Sbjct: 544 PILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 1e-50
Identities = 103/512 (20%), Positives = 174/512 (33%), Gaps = 55/512 (10%)
Query: 14 LPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQ 73
S + L S+ T+ N NL L L + ++ + S L L +
Sbjct: 32 PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLT 89
Query: 74 DSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIW 133
+ + K L+HL I PL N L++
Sbjct: 90 ANPLIF-MAETALSGPKALKHLF-------FIQTGISSID--FIPLHNQKTLESLY---- 135
Query: 134 AETESHYNSVT----PKFQ----LTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHL 181
N ++ PK L + Y+ L+ A L
Sbjct: 136 ----LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-------SSLQQATNLSL 184
Query: 182 NLSGNFPNWL---VENNTNLETLLLANNSLFGSF--RMPIHSYQKLAILDVSKNFFQGHI 236
NL+GN + ++ ++L + + Q L + +
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 237 PVEI-GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL 295
P G + +NL ++ F ++F L+ LD++ L+ E+P + G
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLST 302
Query: 296 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEI-SDSLSNCRLLAGLYLSDNHL 354
L+ L LS N + N +L L + GN E+ + L N L L LS + +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 355 --SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLP-SCFS 411
S L NLS L+ + +S N F + L +LDL+ + S F
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422
Query: 412 -PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSI---PNWINILPQLSSLL 467
++ ++LS + ++ E + P L L+L N F N + L +L L+
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482
Query: 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG 499
L + LK + +DLSHN L+
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-41
Identities = 58/346 (16%), Positives = 110/346 (31%), Gaps = 21/346 (6%)
Query: 168 YHQHDLKNADLSHLNLS---GNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAI 224
+ K + +L L+ G PN + E L + N L L
Sbjct: 9 IEKEVNKTYNCENLGLNEIPGTLPN-------STECLEFSFNVLPTIQNTTFSRLINLTF 61
Query: 225 LDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGE 284
LD+++ I + L L L+ N ++ + K L+ L ++
Sbjct: 62 LDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS- 119
Query: 285 IPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLL 344
I LE L L +N++ K F L L N + +S+ +
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179
Query: 345 AGLYL--SDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP--IEFCQLDYLTILDLSNN 400
L L + N ++G I + + + + I ++ + L + +
Sbjct: 180 TNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Query: 401 AIFGTLPSCFSPAF---IEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWI 457
P+ F +E ++L K+ + H L LDL+ +P+ +
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297
Query: 458 NILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPA 503
L L L+L N E + + + + N +
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 5e-40
Identities = 71/428 (16%), Positives = 126/428 (29%), Gaps = 56/428 (13%)
Query: 89 FKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQ 148
+ E L+ S N I + L L D
Sbjct: 32 PNSTECLE-------FSFNVLPTIQNT--TFSRLINLTFLD------------------- 63
Query: 149 LTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLETLLLA 204
LT + I TF L L L+ N + L+ L
Sbjct: 64 LTRCQIYW-IHEDTF-------QSQHR--LDTLVLTANPLIFMAETALSGPKALKHLFFI 113
Query: 205 NNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS 264
+ +P+H+ + L L + N I + G L L+ NA +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKED 172
Query: 265 FADMKMLER--LDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFS--KKFNLTNL 320
+ ++ L+++ N + G P A + + L IF K + +L
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPG--AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230
Query: 321 MRLQLDGNNFTGEISDSLSNCRLLAG--LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378
+ + ++ + L ++ S L+++ ++ +L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290
Query: 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLES-IIHDS 436
+P L L L LS N S + + + N +L + + +
Sbjct: 291 SE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 437 PYLVTLDLSYNRFHGS--IPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSH 494
L LDLS++ S + L L SL L N E ++ L+DL+
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 495 NNLSGYIP 502
L
Sbjct: 410 TRLKVKDA 417
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 8e-37
Identities = 50/367 (13%), Positives = 100/367 (27%), Gaps = 44/367 (11%)
Query: 297 EILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353
+ N L G + + + L+ N + + S L L L+
Sbjct: 15 KTYNCENLGLNEIPGTLPN------STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68
Query: 354 LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP- 412
+ + L+ + ++ N L L L I
Sbjct: 69 IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128
Query: 413 AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLS--SLLLGN 470
+E ++L N I + L LD N H ++ L Q + SL L
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188
Query: 471 NYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASV 530
N I I + + ++ I L +++ S+W
Sbjct: 189 NDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI----------QSLWLGTFED 237
Query: 531 YGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYL 590
+ + + S+ I+L +
Sbjct: 238 MDDEDISPAVFEGLCE--------------------MSVESINLQKHYFFNISSNTFHCF 277
Query: 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNN 650
+ + L+L+ +L+ +P+ L ++ L LS N + +L + N
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 651 LSGKIPD 657
++
Sbjct: 337 KRLELGT 343
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 3e-35
Identities = 72/409 (17%), Positives = 133/409 (32%), Gaps = 66/409 (16%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGH 309
N N IP + E L+ S+N L I + L L L+ +
Sbjct: 17 YNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY-W 71
Query: 310 IFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSAL 368
I F + L L L N +LS + L L+ +S L N L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 369 EDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF---IEQVHLSKNKI 425
E + + +N++ + + L +LD NNAI S ++L+ N I
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191
Query: 426 EGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK 485
G +E DS +L+ + N + I L + + + + L +
Sbjct: 192 AG-IEPGAFDSAVFQSLNFGGTQ------NLLVIFKGLKNSTIQS--------LWLGTFE 236
Query: 486 EVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMG 545
++ D+S G + +L + Y + C
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC-------------------- 276
Query: 546 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG 605
+ + +DL+ L+ E+P+ + L+ + L LS N
Sbjct: 277 --------------------FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315
Query: 606 TIPTTFSNLKQIESLDLSYNLLHGKIPSQ-LTVLNTLAVFKVAYNNLSG 653
+ SN + L + N ++ + L L L ++++++
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-24
Identities = 86/432 (19%), Positives = 134/432 (31%), Gaps = 130/432 (30%)
Query: 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASF 64
S++ + L +LK L LS F L S ++F
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFEN------LCQ--------------------ISASNF 324
Query: 65 TSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSK 124
SL +LS++ + + L +NL LD LS++ L NLS
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELD-------LSHDDIETSDCCNLQLRNLSH 377
Query: 125 LKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLS 184
L+ LNLS
Sbjct: 378 LQ-----------------------------------------------------SLNLS 384
Query: 185 GN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEI 240
N + LE L LA L +++ FQ
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVK---------------DAQSPFQN------ 423
Query: 241 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL--LEI 298
L L LNLS + + S F + L+ L++ N ++ + L LEI
Sbjct: 424 ---LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
Query: 299 LALSNNNLQG---HIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355
L LS +L H F+ +L + + L N T ++LS+ + + L L+ NH+S
Sbjct: 481 LVLSFCDLSSIDQHAFT---SLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHIS 536
Query: 356 GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYL-TILDLSNNAIFG-TLPSCFSPA 413
+P L LS I + N L+ C Y + + C +P
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDC-----TCSNIYFLEWYKENMQKLEDTEDTLCENPP 591
Query: 414 FIEQVHLSKNKI 425
+ V LS +
Sbjct: 592 LLRGVRLSDVTL 603
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 3e-13
Identities = 43/285 (15%), Positives = 88/285 (30%), Gaps = 63/285 (22%)
Query: 2 IDGSKVLQSIGSLPSLKTLYLSYTNFTG-TVVNQELHNFTNLEELILDKSDLHVSQLLSS 60
+ +L +L+ L LS+ + N +L N ++L+ L L ++ + +
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEA 395
Query: 61 IASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLF 120
L+ L + + K F+ L+ L+ LS++ L
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN-------LSHSLLDISSEQL--FD 446
Query: 121 NLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSH 180
L L+ +L
Sbjct: 447 GLPALQHL------------------------------------------------NLQG 458
Query: 181 LNLSGN--FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPV 238
+ ++ LE L+L+ L + S + + +D+S N +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSI 517
Query: 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTG 283
E ++L G+ LNL+ N + +PS + +++ N L
Sbjct: 518 EALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSY 624
L+ + ++LS N+ ++ L+L+ L + F NL ++ L+LS+
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFS 663
+LL L L + N+ +
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 5e-11
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIG---YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL 622
L ++ ++L N + L R+ L LS +L+ F++LK + +DL
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 623 SYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677
S+N L L+ L + +A N++S +P + S + NP C
Sbjct: 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
++ + ++ + + +L L N+++ ++++ LD N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYN-NLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682
+H ++ L + N N I + F+ ++ G L
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 566 LTSMSGIDLSCNKLT--GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623
L ++ +DLS + + Q+ L+ + +LNLS+N F Q+E LDL+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408
Query: 624 YNLLHGKIP-SQLTVLNTLAVFKVAYNNLSGKIPD 657
+ L K S L+ L V ++++ L
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 566 LTSMSGIDLSCNKLTG-EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ +DL+ +L + + L + LNLSH+ L + F L ++ L+L
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 625 NLLHGKI---PSQLTVLNTLAVFKVAYNNLSGKIPD 657
N + L L L + +++ +LS
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSY 624
L+++ + LS NK + L++ N + T NL+ + LDLS+
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 625 NLLH--GKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
+ + QL L+ L ++YN +
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 1e-52
Identities = 91/524 (17%), Positives = 173/524 (33%), Gaps = 60/524 (11%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSI--ASFTSL 67
+IG L LK L + T EEL D S+ ++
Sbjct: 342 AIGQLTELKVLSFGTHSETV------SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
+ L++ D + + + K + + Q+ N I +++ L L +
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455
Query: 128 FDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNF 187
+ + + DL + +L +
Sbjct: 456 ANSPF--------TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507
Query: 188 PNWLVENNTNLETLLLANNSLFGSFRMP---------IHSYQKLAILDVSKNFFQGHIPV 238
P++L + L++L +A N + ++ + K+ I + N + P
Sbjct: 508 PDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPA 565
Query: 239 EIG-TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLE 297
+ L L+ N +F L L + YNQ+ EIPE +E
Sbjct: 566 SASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622
Query: 298 ILALSNNNLQG--HIFSKKFNLTNLMRLQLDGNNFTG---EISDSLSNCRL--LAGLYLS 350
L S+N L+ +IF+ K ++ + + N IS S+ + + + + LS
Sbjct: 623 GLGFSHNKLKYIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681
Query: 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLE-------GPIPIEFCQLDYLTILDLSNNAIF 403
N + S + I +SNN + P + LT +DL N +
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL- 740
Query: 404 GTLPSCFSPAF---IEQVHLSKNKIEGQLESIIHDSPYLVTLDLSY------NRFHGSIP 454
+L F + + +S N + +S L + + NR P
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799
Query: 455 NWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
I P L L +G+N I ++ +L ++ ++D++ N
Sbjct: 800 TGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 3e-50
Identities = 81/549 (14%), Positives = 148/549 (26%), Gaps = 133/549 (24%)
Query: 177 DLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHI 236
L+ G P+ + T L+ L +S S R+ + + K+ + H
Sbjct: 329 SLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387
Query: 237 PVEIGTYLPGLMDLNLSRNAFNG----------------------------SIPSSFADM 268
Y L +L ++A N I + +
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447
Query: 269 KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 328
L+ + + + T + E + NL +L ++L
Sbjct: 448 TKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501
Query: 329 NFTGEISDSLSNCRLLAGLYLSDNHLSG---------RIPRWLGNLSALEDIRMSNNNLE 379
++ D L + L L ++ N R+ ++ M NNLE
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561
Query: 380 G-PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPY 438
P ++ L +LD +N + L + +
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKV-RHLEA------------------------FGTNVK 596
Query: 439 LVTLDLSYNRFHGSIPNWI-NILPQLSSLLLGNNYIEGEIP--VQLCELKEVRLIDLSHN 495
L L L YN+ IP Q+ L +N ++ IP + + +D S+N
Sbjct: 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654
Query: 496 NLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTK 555
+ M + + +T
Sbjct: 655 KIGS------------------------------------EGRNISCSMDDYKGINASTV 678
Query: 556 NMSY-------YYQGRILTSMSGIDLSCNKLT-------GEIPTQIGYLTRIHALNLSHN 601
+SY + +S I LS N +T + ++L N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738
Query: 602 NLTGTIPT-TFSNLKQIESLDLSYNLLHGKIP------SQLTVLNTLAVFKVAYNNLSGK 654
LT + L + ++D+SYN P SQL N + +
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797
Query: 655 IPDRVAQFS 663
P +
Sbjct: 798 WPTGITTCP 806
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 9e-45
Identities = 62/377 (16%), Positives = 128/377 (33%), Gaps = 32/377 (8%)
Query: 148 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNS 207
++T +SL+G+ G P + +LK + + + + E T + +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 208 LFGSFRMPIHSYQKLAILDVSKNFFQGH-----IPVEIGTYLPGLMDLNLSRNAFNGSIP 262
+M + Q+L + D+ ++ + I + L + N I
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT-QIGNLTNRI-TFIS 441
Query: 263 SSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMR 322
+ + L+ + + + T + E + NL +L
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTD 495
Query: 323 LQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG---------RIPRWLGNLSALEDIRM 373
++L ++ D L + L L ++ N R+ ++ M
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555
Query: 374 SNNNLEG-PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESI 432
NNLE P ++ L +LD +N + L + + + + L N+IE E
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDYNQIEEIPEDF 614
Query: 433 IHDSPYLVTLDLSYNRFHGSIPNWINI--LPQLSSLLLGNNYIEGEIPVQLCELKEVRL- 489
+ + L S+N+ IPN N + + S+ N I E C + + +
Sbjct: 615 CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673
Query: 490 ----IDLSHNNLSGYIP 502
+ LS+N + +
Sbjct: 674 NASTVTLSYNEIQKFPT 690
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-42
Identities = 84/530 (15%), Positives = 151/530 (28%), Gaps = 62/530 (11%)
Query: 179 SHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPV 238
L++ G+ P ++NN + L LA G I +L +L + +
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
Query: 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGE---IPERMATGCFL 295
L M + L D+ + + P + + L
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425
Query: 296 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355
+ + N I LT L + + FT +
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQY 480
Query: 356 GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFI 415
NL L D+ + N +P L L L+++ N +
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540
Query: 416 ----------EQVHLSKNKIEG-QLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLS 464
+ ++ N +E + + L LD +N+ + + +L+
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGT-NVKLT 598
Query: 465 SLLLGNNYIEGEIPVQLCE-LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSI 523
L L N IE EIP C +V + SHN L IP S+ S+
Sbjct: 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVM-------GSV 649
Query: 524 WCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI 583
+ M + + +T +SY N++
Sbjct: 650 DFSYNKIGS---EGRNISCSMDDYKGINASTVTLSY-----------------NEIQKFP 689
Query: 584 PTQIGYLTRIHALNLSHNNLT-------GTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636
+ I + LS+N +T + N + ++DL +N L +
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFR 748
Query: 637 V--LNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKS 684
L L+ V+YN S P + S + G + +
Sbjct: 749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 7e-34
Identities = 60/443 (13%), Positives = 112/443 (25%), Gaps = 112/443 (25%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
+ LP L++L ++ + ++L + ++
Sbjct: 509 DFLYDLPELQSLNIACNRGIS-----------------AAQLKADWTRLADDEDTGPKIQ 551
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTF 128
M + + +K L LD +N + KL
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLD-------CVHNKVRHLE----AFGTNVKLT-- 598
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN-- 186
L L N
Sbjct: 599 ---------------------------------------------------DLKLDYNQI 607
Query: 187 --FPNWLVENNTNLETLLLANNSLFG-SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY 243
P +E L ++N L S + +D S N I
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCS 666
Query: 244 LPG-----LMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMAT------- 291
+ + LS N FA + + +S N +T IPE
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYK 725
Query: 292 GCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYL- 349
+LL + L N L + L L + + N F+ N L +
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIR 784
Query: 350 -----SDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF- 403
N + + P + +L +++ +N++ + + L ILD+++N
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNIS 841
Query: 404 GTLPSCFSPAFIEQVHLSKNKIE 426
+ S L +K +
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-28
Identities = 47/395 (11%), Positives = 106/395 (26%), Gaps = 81/395 (20%)
Query: 274 LDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGE 333
+ I + I + A E L N + + N + + + +
Sbjct: 257 VPIQLKETAEYIKDYKALKAIW-EALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWGDQ 314
Query: 334 ISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLT 393
L N + GL L+ GR+P +G L+ L+ + ++ + +
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374
Query: 394 ILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH--- 450
+ + + I F + L DL + +
Sbjct: 375 MSEERKHRIRMHYKKMF----------------------LDYDQRLNLSDLLQDAINRNP 412
Query: 451 --GSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPA-CLVY 507
I I + + + N I I + L ++++I +++ + A
Sbjct: 413 EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471
Query: 508 TSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILT 567
+ E S L
Sbjct: 472 ANSDYAKQYENEELSWSN----------------------------------------LK 491
Query: 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG---------TIPTTFSNLKQIE 618
++ ++L ++P + L + +LN++ N + +I+
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551
Query: 619 SLDLSYNLLHG-KIPSQLTVLNTLAVFKVAYNNLS 652
+ YN L + L + L + +N +
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 2e-19
Identities = 46/328 (14%), Positives = 87/328 (26%), Gaps = 55/328 (16%)
Query: 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFT 65
+ L++ G+ L L L Y + +E L + L + + S
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644
Query: 66 SLKYLSMQD----SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFN 121
+ + S + D K N + LS N + P L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT-------LSYNEIQKFPTEL--FAT 695
Query: 122 LSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHL 181
S + T N +TSI + + + L DL
Sbjct: 696 GSPISTII--------LSNN------LMTSIPEN---SLKPKDGNYKNTYLLTTIDLRFN 738
Query: 182 NLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIG 241
L+ ++ L + ++ N SF + +L +
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQ----------- 786
Query: 242 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301
+ N P+ L +L I N + ++ E++ L IL +
Sbjct: 787 --------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQ---LYILDI 834
Query: 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNN 329
++N + L +
Sbjct: 835 ADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 4e-18
Identities = 35/316 (11%), Positives = 79/316 (25%), Gaps = 46/316 (14%)
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHD 435
I LD N + + + + + Q + +
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN 321
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495
+ + L L+ G +P+ I L +L L G + + E + + +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381
Query: 496 NLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTK 555
+ + + + P +++ T
Sbjct: 382 RIRMHYKKMFL-----------DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430
Query: 556 NMSYYYQGRI------LTSMSGIDLSCNKLTG-------------------EIPTQIGYL 590
I LT + I + + T L
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490
Query: 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG---------KIPSQLTVLNTL 641
+ + L + +P +L +++SL+++ N ++ +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550
Query: 642 AVFKVAYNNLSGKIPD 657
+F + YNNL P
Sbjct: 551 QIFYMGYNNLEE-FPA 565
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 12/124 (9%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSH------NNLTGTIPTTFSNLKQIES 619
L +S +D+S N + PTQ +++ A + H N + PT + +
Sbjct: 752 LPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810
Query: 620 LDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL-SGKIPDRVAQFSTFEED-SYEGNPFLC 677
L + N + K+ +L L + +A N S + Y+ +
Sbjct: 811 LQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867
Query: 678 GWPL 681
G
Sbjct: 868 GCDA 871
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 564 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623
+ D N++ + PT I + L + N++ L LD++
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIA 835
Query: 624 YN-LLHGKIPSQLTVLNTLAVFKVAYNNLS 652
N + + S + ++ + Y+
Sbjct: 836 DNPNISIDVTSVCPYI-EAGMYVLLYDKTQ 864
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 2e-52
Identities = 98/638 (15%), Positives = 203/638 (31%), Gaps = 115/638 (18%)
Query: 41 NLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWV 100
+ + D +S++ I +S K + + + K L F F L+ LD
Sbjct: 10 VVPNITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLD---- 62
Query: 101 QLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDG 160
LS I L L LT +
Sbjct: 63 ---LSRCEIETIEDKA--WHGLHHLSNLI-------------------LTGNPIQS-FSP 97
Query: 161 GTFPKFLYHQHDLKNADLSHLNLSGNF----PNWLVENNTNLETLLLANNSLFG-SFRMP 215
G+F L + L +L ++ + L+ L +A+N +
Sbjct: 98 GSF-------SGLTS--LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148
Query: 216 IHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL----MDLNLSRNAFNGSIPSSFADMKML 271
+ L +D+S N+ Q I V +L + L++S N + +F +K L
Sbjct: 149 FSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-L 206
Query: 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF------NLTNLMRLQL 325
L + N + I + L + L + + F L ++ +
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 326 D--GNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP 383
N + ++ + L+ + + + + + + L+
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED-VPKHFKWQSLSIIRCQLKQ--- 321
Query: 384 IEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHD--SPYLVT 441
L +L L L+ N + P+ + + LS+N + D + L
Sbjct: 322 FPTLDLPFLKSLTLTMNKGSISFKKVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRH 380
Query: 442 LDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQ-LCELKEVRLIDLSHNNLSGY 500
LDLS+N + L +L L ++ ++ L+++ +D+S+ N
Sbjct: 381 LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439
Query: 501 IPACLVYTS------LGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTT 554
+ + + + ++ ++++ +
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN---------------------------- 471
Query: 555 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 614
T+++ +DLS +L L R+ LN+SHNNL + ++ L
Sbjct: 472 -----------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520
Query: 615 KQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
+ +LD S+N + +LA F + N+++
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 8e-49
Identities = 82/498 (16%), Positives = 162/498 (32%), Gaps = 45/498 (9%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
S L SL+ L T + + + L++L + + +H +L + ++ T+L
Sbjct: 98 GSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTF 128
++ + + + + D + + +++ L +S N I F KL
Sbjct: 157 HVDLSYNYIQT-ITVNDLQFLRENPQVNL---SLDMSLNPIDFIQDQA---FQGIKLHEL 209
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLY-HQHDLKNADLSHLNLSGNF 187
L S I H H L + F
Sbjct: 210 T-------------------LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250
Query: 188 PNWLVENNTNL--ETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLP 245
++E ++ + L + F + H ++ + ++ + +E
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVPKHF 307
Query: 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNN 305
L++ R D+ L+ L ++ N+ + + L L LS N
Sbjct: 308 KWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNA 361
Query: 306 LQ--GHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRW-L 362
L G +L L L N +S + L L + L
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 363 GNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF--SPAFIEQVHL 420
+L L + +S N + F L L L ++ N+ S + + + L
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480
Query: 421 SKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQ 480
SK ++E + L L++S+N + N L LS+L N IE +
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
Query: 481 LCELKEVRLIDLSHNNLS 498
K + +L++N+++
Sbjct: 541 QHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 5e-46
Identities = 82/536 (15%), Positives = 161/536 (30%), Gaps = 71/536 (13%)
Query: 15 PSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQD 74
S K + LS+ + + NF+ L+ L L + ++ + + L L +
Sbjct: 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTG 89
Query: 75 SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWA 134
+ + F +LE+L + P+ L LK +
Sbjct: 90 NPIQS-FSPGSFSGLTSLENLV-------AVETKLASLE--SFPIGQLITLKKLNV---- 135
Query: 135 ETESHYNSVT----PKF-----QLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHL 181
+N + P + L + LS I + + D+S
Sbjct: 136 ----AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191
Query: 182 NLSGNFPNWLVENNTNLETLLLANNSLFGS-FRMPIHSYQKLAILDVSKNFFQGHIPVEI 240
+ L L L N + + + + L + + F+ +EI
Sbjct: 192 PIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249
Query: 241 -------GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGC 293
G + + L+ F + + + ++ + + +
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED--VPKH 306
Query: 294 FLLEILALSNNNL-------------------QGHIFSKKFNLTNLMRLQLDGNNFTGEI 334
F + L++ L +G I KK L +L L L N +
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 366
Query: 335 SDSLSNCRL--LAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIE-FCQLDY 391
S S+ L L LS N + L L+ + ++ L+ F L+
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425
Query: 392 LTILDLSNNAIFGTLPSCFSPAF-IEQVHLSKNKIEGQLES-IIHDSPYLVTLDLSYNRF 449
L LD+S F + + ++ N + S + ++ L LDLS +
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485
Query: 450 HGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
+ L +L L + +N + +L + +D S N +
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 5e-41
Identities = 83/500 (16%), Positives = 151/500 (30%), Gaps = 63/500 (12%)
Query: 176 ADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGH 235
LS P+ + ++ + + L+ N L ++ +L LD+S+ +
Sbjct: 16 YQCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71
Query: 236 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL 295
L L +L L+ N P SF+ + LE L +L +
Sbjct: 72 EDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLIT 129
Query: 296 LEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCR----LLAGLYLS 350
L+ L +++N + F NLTNL+ + L N + L R + L +S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189
Query: 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQ-LDYLTILDLSNNAIFGTLPSC 409
N + I L ++ + N I Q L L + L
Sbjct: 190 LNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248
Query: 410 FSPA---------FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINIL 460
I++ L+ H + + L+ + +
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPK-H 306
Query: 461 PQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPP 520
+ SL + ++ + L LK + L+ N + SL
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLKS---LTLT-MNKGSISFKKVALPSL---------- 352
Query: 521 TSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT 580
+ + R ++ S C S+ +DLS N
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLG-----------------------TNSLRHLDLSFNGAI 389
Query: 581 GEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGKIPSQLTVLN 639
+ L + L+ H+ L F +L+++ LD+SY L
Sbjct: 390 -IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448
Query: 640 TLAVFKVAYNNLSGKIPDRV 659
+L K+A N+ V
Sbjct: 449 SLNTLKMAGNSFKDNTLSNV 468
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 1e-40
Identities = 84/459 (18%), Positives = 156/459 (33%), Gaps = 48/459 (10%)
Query: 1 MIDGSKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELI--LDKSDLHVSQLL 58
I K+ +L +L + LSY + +L ++ LD S + +
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197
Query: 59 SSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEP 118
L L+++ + + + L + + N P +E
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257
Query: 119 LFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADL 178
L +++ +F+LT + D F A++
Sbjct: 258 LCDVTID--------------------EFRLTYTNDFS-DDIVKFHCL---------ANV 287
Query: 179 SHLNLSGNFPNWLVE--NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHI 236
S ++L+G +L + + ++L + L P L L ++ N
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISF 344
Query: 237 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM--LERLDISYNQLTGEIPERMATGCF 294
LP L L+LSRNA + S S++D+ L LD+S+N I G
Sbjct: 345 K---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLE 399
Query: 295 LLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353
L+ L ++ L+ F +L L+ L + N + L L ++ N
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459
Query: 354 LSGRIPR-WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP 412
N + L + +S LE F L L +L++S+N + S ++
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Query: 413 AF-IEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450
+ + + S N+IE + H L +L+ N
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 5e-36
Identities = 78/480 (16%), Positives = 147/480 (30%), Gaps = 64/480 (13%)
Query: 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254
T + L ++P +D+S N + + + L L+LSR
Sbjct: 10 VVPNITYQCMDQKLS---KVPDDIPSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSR 65
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKK 314
++ + L L ++ N + P FS
Sbjct: 66 CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG----------------------SFS-- 101
Query: 315 FNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG-RIPRWLGNLSALEDIRM 373
LT+L L S + L L ++ N + ++P + NL+ L + +
Sbjct: 102 -GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160
Query: 374 SNNNLEGPIPIEFCQLDYLTI----LDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQL 429
S N ++ + L LD+S N I F + ++ L N +
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220
Query: 430 -ESIIHDSPYLVTLDLSYNRFHGSI------PNWINILPQLS--SLLLGNNYIEGEIPVQ 480
++ + + L L F P+ + L ++ L + V+
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 481 LCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQS 540
L V + L+ ++ Y+ + P L
Sbjct: 281 FHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQF-----PTLDLPFL---- 330
Query: 541 GPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT--GEIPTQIGYLTRIHALNL 598
+++ T S ++ L S+S +DLS N L+ G + L+L
Sbjct: 331 -------KSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP-SQLTVLNTLAVFKVAYNNLSGKIPD 657
S N + F L++++ LD ++ L S L L ++Y N
Sbjct: 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 5e-36
Identities = 79/435 (18%), Positives = 132/435 (30%), Gaps = 52/435 (11%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIA--SFTSL 67
L L L + ++ L N L L + + L L
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258
Query: 68 KYLSMQD-SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLK 126
+++ + + D KF L ++ + L+ + + F L
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANV----SAMSLAGVSIKYLE-DVPKHFKWQSLS 313
Query: 127 TFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN 186
+ Q ++ L LK+ L+ S +
Sbjct: 314 I-----------IRCQLK---QFPTLDLPF----------------LKSLTLTMNKGSIS 343
Query: 187 FPNWLVENNTNLETLLLANNSLFGSFRMPIH--SYQKLAILDVSKNFFQGHIPVEIGTYL 244
F +L L L+ N+L S L LD+S N I L
Sbjct: 344 FKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN--GAIIMSANFMGL 398
Query: 245 PGLMDLNLSRNAFNGSIP-SSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L L+ + S+F ++ L LDISY + + G L L ++
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAG 457
Query: 304 NNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWL 362
N+ + + S F N TNL L L L L +S N+L
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517
Query: 363 GNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSK 422
L +L + S N +E I L +L+NN++ C F++ V K
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI---CEHQKFLQWVKEQK 574
Query: 423 NKIEGQLESIIHDSP 437
+ +E + +P
Sbjct: 575 QFLVN-VEQMTCATP 588
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 3e-33
Identities = 72/412 (17%), Positives = 132/412 (32%), Gaps = 42/412 (10%)
Query: 259 GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG---HIFSKKF 315
GS+ + + +L+ ++P+ + + + + LS N L+ + FS
Sbjct: 2 GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPSS---TKNIDLSFNPLKILKSYSFS--- 53
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
N + L L L + L+ L L+ N + P L++LE++
Sbjct: 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAI--------FGTLPSCFSPAFIEQVHLSKNKI-- 425
L QL L L++++N I F L + + V LS N I
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN------LVHVDLSYNYIQT 167
Query: 426 --EGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCE 483
L+ + + ++LD+S N I + +L L L N+ I +
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226
Query: 484 -LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGP 542
L + + L E +I R +
Sbjct: 227 NLAGLHVHRLILGEFKDERN----LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282
Query: 543 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNN 602
+ + ++ Y + + +L + PT L + +L L+ N
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLTMNK 339
Query: 603 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNT--LAVFKVAYNNLS 652
+I L + LDLS N L + L T L +++N
Sbjct: 340 G--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 1/113 (0%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
LTS++ + ++ N + + T + L+LS L F L +++ L++S+
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677
N L S L +L+ ++N + + + N C
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQ-IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L + +D + L L ++ L++S+ N F L + +L ++
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457
Query: 625 NLLHGKIPSQ-LTVLNTLAVFKVAYNNLSGKIPD 657
N S L ++ L
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 2e-40
Identities = 109/636 (17%), Positives = 206/636 (32%), Gaps = 81/636 (12%)
Query: 177 DLSHLNLSGNF----PNWLVENNTNLETLLLANNSLFGSF-RMPIHSYQKLAILDVSKNF 231
L LS N+ L+ L L + + + + L ILD+ +
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 232 FQGHIPVEIGTYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERLDISYNQLTGEIPERM 289
+ + L L +L L + ++ F ++K L RLD+S NQ+
Sbjct: 85 IY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143
Query: 290 ATGCFLLEILALSNNNLQGHIFSKKFN---LTNLMRLQLDGNNFTGEISDSLSNC----- 341
L+ + S+N + + + L L N+ +S C
Sbjct: 144 FGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 342 -RLLAGLYLSDNHLSGRIPR------------WLGNLSALEDIRMSNNNLEGPIPIEFCQ 388
+L L +S N + I L + +N++ P F
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 389 LD--YLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLS 445
L + LDLS+ +F F ++ ++L+ NKI + + L L+LS
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 446 YNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG-YIPAC 504
YN + LP+++ + L N+I L++++ +DL N L+ +
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382
Query: 505 LVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGR 564
+ L + P ++ + + + + + +Q ++
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ--ILILNQNRFSS 440
Query: 565 I--------LTSMSGIDLSCNKLTGEIPTQI-----GYLTRIHALNLSHNNLTGTIPTTF 611
S+ + L N L T++ L+ + L L+HN L P F
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500
Query: 612 SNLKQIESLDLSYNLLH----GKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEE 667
S+L + L L+ N L +P+ L +L+ ++ N L PD F +
Sbjct: 501 SHLTALRGLSLNSNRLTVLSHNDLPANLEILD------ISRNQLLAPNPD---VFVSLSV 551
Query: 668 DSYEGNPFLC-------------------GWPLSKSCDDNGLTTVTTEADTKNEEGDSLI 708
N F+C G P C + + E D
Sbjct: 552 LDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEE 611
Query: 709 DMDSFLITFTVSYGIVILGIIGVLYVNPYWRRRWFY 744
+ S + + + + + + +R F
Sbjct: 612 VLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFI 647
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-37
Identities = 103/525 (19%), Positives = 171/525 (32%), Gaps = 94/525 (17%)
Query: 14 LPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQ 73
L + + L LS+ TV L+ L L ++ + + +L+ L +
Sbjct: 23 LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 74 DSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIW 133
S LH F+ +L L L + NL L D
Sbjct: 82 SSKIY-FLHPDAFQGLFHLFELR-------LYFCGLSDAVLKDGYFRNLKALTRLD---- 129
Query: 134 AETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVE 193
N Q+ S+ L L + L ++ S N + E
Sbjct: 130 ----LSKN------QIRSLYLHPSFGK------------LNS--LKSIDFSSNQIFLVCE 165
Query: 194 N------NTNLETLLLANNSL----FGSFRMPIHSYQ--KLAILDVSKNFFQGHIPVEIG 241
+ L LA NSL + ++ ++ L ILDVS N + I
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT---- 221
Query: 242 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL--LEIL 299
NA + S S + ++ + + + G + L
Sbjct: 222 ---------GNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHL 271
Query: 300 ALSNNNL---QGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG 356
LS+ + +F L +L L L N ++ L L LS N L
Sbjct: 272 DLSHGFVFSLNSRVFE---TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 357 RIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI--FGTLPSCFS--- 411
L + I + N++ F L+ L LDL +NA+ +PS
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388
Query: 412 -----------PAFIEQVHLSKNKIEG-QLESIIHDSPYLVTLDLSYNRFHGSIPNWI-N 458
+HLS+N++E + + P+L L L+ NRF + +
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448
Query: 459 ILPQLSSLLLGNNYIEGEIPVQLCE-----LKEVRLIDLSHNNLS 498
P L L LG N ++ +LC L ++++ L+HN L+
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 6e-37
Identities = 105/537 (19%), Positives = 183/537 (34%), Gaps = 50/537 (9%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQE-LHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLS 71
L L L L + + V+ N L L L K+ + L S SLK +
Sbjct: 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154
Query: 72 MQDSVFKGALHGQDFR--KFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFD 129
+ + + + K L + L + + ++ L L
Sbjct: 155 FSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213
Query: 130 GEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHD------LKNADLSHLNL 183
+ ++++ K Q S+ L+ +I G F D L + + HL+L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273
Query: 184 SGNF----PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239
S F + + E +L+ L LA N + + L +L++S N +
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSS 332
Query: 240 IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLT--------------GEI 285
LP + ++L +N +F ++ L+ LD+ N LT G
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK 392
Query: 286 PERMATGCFLLEILALSNNNLQG-HIFSKKFNLTNLMRLQLDGNNFTG-EISDSLSNCRL 343
+ ++ LS N L+ I + +L L L+ N F+ + S
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452
Query: 344 LAGLYLSDNHLSGRI-----PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLS 398
L L+L +N L LS L+ + +++N L P F L L L L+
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512
Query: 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN 458
+N + L PA +E + +S+N++ + L LD+++N+F
Sbjct: 513 SNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE---- 564
Query: 459 ILPQLSSLLLGNNYIEGEIPVQLC-----ELKEVRLIDLSHNNLSGYIPACLVYTSL 510
L + L N P + V L LS + SL
Sbjct: 565 -LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSL 620
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-29
Identities = 74/420 (17%), Positives = 130/420 (30%), Gaps = 65/420 (15%)
Query: 249 DLNLSRNAFNG--SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNL 306
D ++ F +P + ERL +S+N + + L++L L +
Sbjct: 5 DGRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYT 60
Query: 307 QGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRI--PRWLG 363
I + F NL NL L L + D+ L L L LS + +
Sbjct: 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
Query: 364 NLSALEDIRMSNNNLEG-PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP---AFIEQVH 419
NL AL + +S N + + F +L+ L +D S+N IF P +
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 420 LSKNKIEGQLESIIHDSP------YLVTLDLSYNRFHGSIPNW-INILPQLSSLLLGNNY 472
L+ N + ++ L LD+S N + I N + + + L +
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 473 IEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYG 532
+ + D N +G + + + L +
Sbjct: 241 H-----IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET------- 288
Query: 533 SPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTR 592
L + ++L+ NK+ L
Sbjct: 289 ---------------------------------LKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 593 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
+ LNLS+N L + F L ++ +DL N + L L + N L+
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 16/132 (12%)
Query: 2 IDGSKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQL---- 57
++ +L + +P L+ L L+ F+ +Q +LE+L L ++ L ++
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472
Query: 58 LSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLE 117
+ L+ L + + +L F L L L++N +
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLS-------LNSNRLTVLS---- 520
Query: 118 PLFNLSKLKTFD 129
+ L+ D
Sbjct: 521 HNDLPANLEILD 532
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-35
Identities = 89/506 (17%), Positives = 164/506 (32%), Gaps = 48/506 (9%)
Query: 15 PSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQD 74
S K L LS+ + + +F L+ L L + ++ + + S + L L +
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTG 85
Query: 75 SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIP-ISLEPLFNLSKLKTFDGEIW 133
+ + L F +L+ L + + + L L +L I
Sbjct: 86 NPIQS-LALGAFSGLSSLQKLV-------AVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 134 AETESHYNSVTPKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPN 189
+ Y S L + LS I + L+ L+LS N N
Sbjct: 138 SFKLPEYFSNLTN--LEHLDLSSNKIQSIYCTDL-RVLHQ----MPLLNLSLDLSLNPMN 190
Query: 190 WLVEN---NTNLETLLLANNSLFGS-FRMPIHSYQKLAILDVSKNFFQGH--IPVEIGTY 243
++ L L L NN + + I L + + F+ + +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 244 LPGLMDLNLSRNAFNG------SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLE 297
L GL +L + I F + + + + + + + F +
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD--FSYNFGWQ 307
Query: 298 ILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS-- 355
L L N L +L RL N + S + L L LS N LS
Sbjct: 308 HLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFK 362
Query: 356 GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF--SPA 413
G + ++L+ + +S N + + F L+ L LD ++ + S
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 414 FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWI-NILPQLSSLLLGNNY 472
+ + +S I + L L ++ N F + I L L+ L L
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 473 IEGEIPVQLCELKEVRLIDLSHNNLS 498
+E P L +++++++ N L
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLK 507
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 2e-35
Identities = 84/466 (18%), Positives = 152/466 (32%), Gaps = 42/466 (9%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
L SL+ L TN ++ N + + L+EL + + + +L ++ T+L++L +
Sbjct: 98 GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
+ + ++ D R L + + + L LS N I L KL
Sbjct: 157 SSNKIQS-IYCTDLR---VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL------- 205
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLY-HQHDLKNADLSHLNLSGNFPNWL 191
L + S + H L + + F
Sbjct: 206 ---------------TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 192 VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251
+E NL L I + L + V+ +Y G L
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310
Query: 252 LSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG-HI 310
L F P+ +K L+RL + N+ E LE L LS N L
Sbjct: 311 LVNCKFG-QFPTLK--LKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGC 364
Query: 311 FSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRW--LGNLSA 367
S+ T+L L L N +S + L L ++L ++ + +L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRN 422
Query: 368 LEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF--IEQVHLSKNKI 425
L + +S+ + F L L +L ++ N+ + + LS+ ++
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 426 EGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNN 471
E + + L L+++ N+ + L L + L N
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 4e-33
Identities = 82/449 (18%), Positives = 152/449 (33%), Gaps = 62/449 (13%)
Query: 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQL 281
LD+S N + H+ P L L+LSR ++ + L L ++ N +
Sbjct: 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 282 TGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNC 341
+L FS L++L +L N + + +
Sbjct: 89 Q----------------------SLALGAFS---GLSSLQKLVAVETNLASLENFPIGHL 123
Query: 342 RLLAGLYLSDNHL-SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTI----LD 396
+ L L ++ N + S ++P + NL+ LE + +S+N ++ + L + + LD
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 397 LSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQL-ESIIHDSPYLVTLDLSYNRFHGSI-- 453
LS N + P F + ++ L N + ++ I L L F
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 454 ----PNWINILPQLSSLLLGNNYIEG---EIPVQLCELKEVRLIDLSHNNLSGYIPACLV 506
+ + L L+ Y++ +I L V L + +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSY 302
Query: 507 YTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRIL 566
+ P L +S + + FT+ + L
Sbjct: 303 NFGW----------QHLELVNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSEVDL 346
Query: 567 TSMSGIDLSCNKLT--GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
S+ +DLS N L+ G T + L+LS N + T+ + F L+Q+E LD +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405
Query: 625 NLLHGKIP-SQLTVLNTLAVFKVAYNNLS 652
+ L S L L +++ +
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-29
Identities = 77/501 (15%), Positives = 147/501 (29%), Gaps = 68/501 (13%)
Query: 174 KNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQ 233
LN P+ L + + L L+ N L S+ +L +LD+S+ Q
Sbjct: 10 ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 234 GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGC 293
I L L L L+ N +F+ + L++L L +
Sbjct: 66 -TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHL 123
Query: 294 FLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCR----LLAGLY 348
L+ L +++N +Q + F NLTNL L L N L L L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIE-FCQLDYLTILDLSNNAIFGTLP 407
LS N ++ I L + + NN + L L + L
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF----- 237
Query: 408 SCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSL- 466
++ +E +S + L + + + I++ L+++
Sbjct: 238 ------------RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
Query: 467 ---LLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPP--- 520
L+ + + + L++ L + +
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345
Query: 521 --------------TSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQG-RI 565
+ C S +G+ L + + + +
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSL-----------KYLDLSFNGVITMSSNFLG 394
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L + +D + L + L + L++SH + F+ L +E L ++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 625 NLLHGKIP----SQLTVLNTL 641
N ++L L L
Sbjct: 455 NSFQENFLPDIFTELRNLTFL 475
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-29
Identities = 76/413 (18%), Positives = 135/413 (32%), Gaps = 51/413 (12%)
Query: 275 DISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGE 333
+IP+ + + L LS N L+ H+ S F + L L L
Sbjct: 13 QCMELNFY-KIPDNLPFS---TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 334 ISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLT 393
+ + L+ L L+ N + LS+L+ + NL L L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 394 ILDLSNNAI--------FGTLPSCFSPAFIEQVHLSKNKI----EGQLESIIHDSPYLVT 441
L++++N I F L + +E + LS NKI L + ++
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTN------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 442 LDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP----VQLCELKEVRLI------- 490
LDLS N + I +L L L NN+ + L L+ RL+
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 491 ----DLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQ-----SG 541
+ L G + L + ++ +V +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 542 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHN 601
+ ++ + L S+ + + NK +++ L + L+LS N
Sbjct: 301 SYNFGWQHLEL-VNCKFGQFPTLKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRN 357
Query: 602 NLT--GTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
L+ G + ++ LDLS+N + + S L L ++NL
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 8e-29
Identities = 85/507 (16%), Positives = 161/507 (31%), Gaps = 93/507 (18%)
Query: 41 NLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWV 100
+ + +L+ ++ ++ S K L + + + L F F L+ LD
Sbjct: 6 VVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLD---- 58
Query: 101 QLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDG 160
LS I +LS L T N + S++L
Sbjct: 59 ---LSRCEIQTIEDGA--YQSLSHLSTLI--------LTGN------PIQSLAL------ 93
Query: 161 GTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLETLLLANNSL-FGSFRMP 215
G F L + L L N+ + + L+ L +A+N +
Sbjct: 94 GAF-------SGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 216 IHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL----MDLNLSRNAFNGSIPSSFADMKML 271
+ L LD+S N Q I L + + L+LS N N P +F +++ L
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-L 202
Query: 272 ERLDISYNQLTGEIPERMATGCFLLEILAL------SNNNLQGHIFSKKFNLTNLMRLQL 325
+L + N + + + G LE+ L + NL+ S L NL +
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 326 DGN---NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPI 382
+ +I D + ++ L + R+ + N + + + N
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG-WQHLELVNCKFGQFP 320
Query: 383 PIEFCQLDY-------------------LTILDLSNNAIFGTLPSCFSPAF-----IEQV 418
++ L L LDLS N + + C S + ++ +
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL--SFKGCCSQSDFGTTSLKYL 378
Query: 419 HLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWI--NILPQLSSLLLGNNYIEGE 476
LS N + + S L LD ++ + + L L L + + +
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 477 IPVQLCELKEVRLIDLSHNNLSGYIPA 503
L + ++ ++ N+
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLP 463
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-24
Identities = 65/394 (16%), Positives = 119/394 (30%), Gaps = 52/394 (13%)
Query: 9 QSIGSLPSLKTLYLSYTNFTG------------TVVNQELH--------------NFTNL 42
+ +L +L+ L LS ++N L L
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202
Query: 43 EELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGA--LHGQDFRKFKNLEHLDMGWV 100
+L L + ++ + + I L+ + F+ L D + L +L +
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 101 QLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDG 160
+L + + I L N+S I + YN +L +
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPT 321
Query: 161 GTFPKF--LYHQH----------DLKNADLSHLNLSGN------FPNWLVENNTNLETLL 202
L DL + L L+LS N + T+L+ L
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPS--LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 203 LANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIP 262
L+ N + + ++L LD + + + L L+ L++S +
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 263 SSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLTNLM 321
F + LE L ++ N + T L L LS L+ + F +L++L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 497
Query: 322 RLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355
L + N L ++L N
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 17/93 (18%), Positives = 32/93 (34%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ S +DLS N L + L+LS + + +L + +L L+
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
N + + L++L NL+
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L+S+ + ++ N I L + L+LS L PT F++L ++ L+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
N L L +L + N
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 7e-35
Identities = 88/464 (18%), Positives = 168/464 (36%), Gaps = 49/464 (10%)
Query: 11 IGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYL 70
G L SLK L L + V N TNL+ L + + A TSL L
Sbjct: 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153
Query: 71 SMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIP-ISLEPLFNLSKLKTFD 129
++ + Q + +++ HL L + + I + L ++ L+ D
Sbjct: 154 EIKALSLRN-YQSQSLKSIRDIHHLT-------LHLSESAFLLEIFADILSSVRYLELRD 205
Query: 130 GEIWAETESHYNSVTPKFQLTSISLSG-YIDGGTFPKFLY-HQHDLKNADLSHLNLSGNF 187
+ S + ++ G + +F + L ++ L+ +++ + + N
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 188 PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL 247
+ +++ + L ++ + L + + + + + + L +
Sbjct: 266 LGDFNPSESDVVSELGKVETV------------TIRRLHIPQFYLF-YDLSTVYSLLEKV 312
Query: 248 MDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL--LEILALSNNN 305
+ + + S +K LE LD+S N + E + A L+ L LS N+
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372
Query: 306 LQ-----GHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPR 360
L+ G I L NL L + N F + DS + L LS + +
Sbjct: 373 LRSMQKTGEILL---TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT 427
Query: 361 WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHL 420
LE + +SNNNL+ + L L L +S N + TLP + + +
Sbjct: 428 --CIPQTLEVLDVSNNNLDS-FSLF---LPRLQELYISRNKL-KTLPDASLFPVLLVMKI 480
Query: 421 SKNKIEGQLESIIHDSPYLVTLDLSYNRFHGS------IPNWIN 458
S+N+++ + I L + L N + S + W+N
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 524
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 6e-34
Identities = 93/516 (18%), Positives = 186/516 (36%), Gaps = 63/516 (12%)
Query: 14 LPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQ 73
++K+L LS+ T + + +L NL+ LIL S ++ + + S SL++L +
Sbjct: 25 TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLS 82
Query: 74 DSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFD-GEI 132
D+ +L F +L++L+ L N + + ++ NL+ L+T G +
Sbjct: 83 DNHLS-SLSSSWFGPLSSLKYLN-------LMGNPYQTLGVTSL-FPNLTNLQTLRIGNV 133
Query: 133 WAETESHYNSVTPKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGNFP 188
+E L + + + +++ + HL L +
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL-------KSIRD--IHHLTLHLSES 184
Query: 189 NWLVENN----TNLETLLLANNSLFGSFRMPI---HSYQKLAILDVSKNFFQGHIPVEIG 241
+L+E +++ L L + +L P+ + L + E+
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 242 TYLPGLMDLN--------------LSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPE 287
L +++L+ + + + + + RL I L
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLS 303
Query: 288 RMATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEI---SDSLSNCRL 343
+ + ++ + + N+ + + +L +L L L N E S
Sbjct: 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362
Query: 344 LAGLYLSDNHLS--GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNA 401
L L LS NHL + L L L + +S N P+P + + L+LS+
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421
Query: 402 IFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILP 461
I + +C P +E + +S N L+S P L L +S N+ ++P+ P
Sbjct: 422 I-RVVKTCI-PQTLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK-TLPDASL-FP 473
Query: 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNL 497
L + + N ++ L ++ I L N
Sbjct: 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-31
Identities = 82/557 (14%), Positives = 160/557 (28%), Gaps = 88/557 (15%)
Query: 89 FKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQ 148
++ LD LS N I L + L+ + +
Sbjct: 25 TAAMKSLD-------LSFNKITYIGHG--DLRACANLQVLIL--------KSSRIN---- 63
Query: 149 LTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLETLLLA 204
I+G F + L + L HL+LS N + ++L+ L L
Sbjct: 64 --------TIEGDAF-------YSLGS--LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106
Query: 205 NNSLFG-SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 263
N + L L + I L L +L + +
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166
Query: 264 SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRL 323
S ++ + L + ++ + E A + L L + NL FS +
Sbjct: 167 SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225
Query: 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP 383
+ + +S + L L + + + + + + +
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSE 279
Query: 384 IEFCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTL 442
+ + + L + +F L + +S ++++ + +K+ S L L
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339
Query: 443 DLSYNRFHGSI---PNWINILPQLSSLLLGNNYIE--GEIPVQLCELKEVRLIDLSHNNL 497
DLS N P L +L+L N++ + L LK + +D+S N
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399
Query: 498 SGYIPACLVYTSLGEDYHEEGPPTSIWCDR---ASVYGSPCLPTQSGPPMGKEETVQFTT 554
+C + + V C+P
Sbjct: 400 HPMPDSCQWPEKM----------RFLNLSSTGIRVV--KTCIPQT------------LEV 435
Query: 555 KNMSYYYQGRI---LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTF 611
++S L + + +S NKL +P + + +S N L F
Sbjct: 436 LDVSNNNLDSFSLFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIF 493
Query: 612 SNLKQIESLDLSYNLLH 628
L ++ + L N
Sbjct: 494 DRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-29
Identities = 62/386 (16%), Positives = 125/386 (32%), Gaps = 28/386 (7%)
Query: 274 LDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTG 332
D T IP + ++ L LS N + +I NL L L +
Sbjct: 10 CDGRSRSFT-SIPSGLTAA---MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT 64
Query: 333 EISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL-EGPIPIEFCQLDY 391
D+ + L L LSDNHLS W G LS+L+ + + N + F L
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 392 LTILDLSNNAIFGTLP-SCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRF 449
L L + N F + F+ + ++ + + + + L L +
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184
Query: 450 HGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTS 509
+ + +IL + L L + + L + + G + +
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE--VSSPMKKLAFRGSVLTDESFNE 242
Query: 510 LGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSM 569
L + + + D ++ G + + V+ ++
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE--------------TVTI 288
Query: 570 SGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 629
+ + L ++ T L ++ + + ++ + + +LK +E LDLS NL+
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348
Query: 630 KIPSQLTVLNTLA---VFKVAYNNLS 652
+ ++ N+L
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLR 374
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 3e-26
Identities = 68/400 (17%), Positives = 128/400 (32%), Gaps = 42/400 (10%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
L SL L + + +Q L + ++ L L S+ + +S++
Sbjct: 142 IDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEI-FADILSSVR 199
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTF 128
YL ++D+ + + + +L++ F ++ L + LS+++
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQH-DLKNADLSHLNLSGNF 187
D L + + + + ++ + L +
Sbjct: 260 D-----------------CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302
Query: 188 PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY--LP 245
++ + + N+ +F + L LD+S+N P
Sbjct: 303 STVY-SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361
Query: 246 GLMDLNLSRNAFN--GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL---LEILA 300
L L LS+N +K L LDIS N M C + L
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-----PMPDSCQWPEKMRFLN 416
Query: 301 LSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPR 360
LS+ ++ + + L L + NN S L L LY+S N L +P
Sbjct: 417 LSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLK-TLPD 468
Query: 361 WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNN 400
L +++S N L+ F +L L + L N
Sbjct: 469 A-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 43/266 (16%), Positives = 80/266 (30%), Gaps = 34/266 (12%)
Query: 387 CQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSY 446
D + D + + F ++PS A ++ + LS NKI + L L L
Sbjct: 2 LSCDASGVCDGRSRS-FTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59
Query: 447 NRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLV 506
+R + + L L L L +N++ L ++ ++L N + +
Sbjct: 60 SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSL 118
Query: 507 YTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRIL 566
+ +L +V + F L
Sbjct: 119 FPNL---------TNLQTLRIGNVETFSEIRRID-----------FAG-----------L 147
Query: 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 626
TS++ +++ L + + IH L L + + L + L+L
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207
Query: 627 LHGKIPSQLTVLNTLAVFKVAYNNLS 652
L S L V + K S
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGS 233
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 42/256 (16%), Positives = 81/256 (31%), Gaps = 57/256 (22%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSS--IASFTSL 67
L +K + + + V + +LE L L ++ + L +S ++ SL
Sbjct: 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363
Query: 68 KYLSMQDSVFKG-ALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLK 126
+ L + + + G+ KNL LD +S N F +P S + + L
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLD-------ISRNTFHPMPDSCQWPEKMRFLN 416
Query: 127 TFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN 186
+ + L L++S N
Sbjct: 417 -----------LSST------GIRV------VKTCIPQT------------LEVLDVSNN 441
Query: 187 FPNWLVENNTNLETLLLANNSL----FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242
+ L+ L ++ N L S + L ++ +S+N + +P I
Sbjct: 442 NLDSFSLFLPRLQELYISRNKLKTLPDASL------FPVLLVMKISRNQLK-SVPDGIFD 494
Query: 243 YLPGLMDLNLSRNAFN 258
L L + L N ++
Sbjct: 495 RLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQ-IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
LT++ + + + EI LT ++ L + +L + +++ I L L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653
+ + +L+++ ++ NL+
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLAR 210
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 566 LTSMSGIDLSCNKLT--GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623
S+ + LS N L + + L + +L++S N +P + +++ L+LS
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418
Query: 624 YNLLH---GKIPSQLTVLN 639
+ IP L VL+
Sbjct: 419 STGIRVVKTCIPQTLEVLD 437
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 8e-35
Identities = 59/413 (14%), Positives = 124/413 (30%), Gaps = 40/413 (9%)
Query: 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298
EI ++ ++ ++ S ++ LD+S N L+ +I LE+
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRI 358
L LS+N L +L+ L L L+ N L + L+ ++N++S R+
Sbjct: 63 LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RV 114
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI--------FGTLPSCF 410
++I ++NN + ++ + LDL N I + +
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-- 170
Query: 411 SPAFIEQVHLSKNKIEGQLESIIHDS--PYLVTLDLSYNRFHGSIPNWINILPQLSSLLL 468
+E ++L N + + L TLDLS N+ + ++ + L
Sbjct: 171 ----LEHLNLQYN----FIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221
Query: 469 GNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRA 528
NN + I L + + DL N + + +
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280
Query: 529 SVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIG 588
P L + + + + ++ + +
Sbjct: 281 EECTVPTLGHYGA------YCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERE 333
Query: 589 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTL 641
R ++ I + +L+ L ++ + L
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 7e-28
Identities = 51/348 (14%), Positives = 93/348 (26%), Gaps = 37/348 (10%)
Query: 178 LSHLNLSGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQ 233
+ L+LSGN + T LE L L++N L+ + + S L LD++ N+ Q
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQ 93
Query: 234 ------------------GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLD 275
+ G ++ L+ N ++ LD
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 276 ISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEIS 335
+ N++ +A LE L L N + + L L L N +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMG 207
Query: 336 DSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLE-GPIPIEFCQLDYLTI 394
+ + + L +N L I + L LE + N G + F + +
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266
Query: 395 LDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP 454
+ H E L + + GS
Sbjct: 267 VAKQTVKKLTGQNEEECT-VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET 325
Query: 455 NWINI----LPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
+ + + I + ++ L
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 66/500 (13%), Positives = 130/500 (26%), Gaps = 92/500 (18%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
S ++K L LS + + +L FT LE L L S +L SL
Sbjct: 28 SLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS------SNVLYETLDLESL- 79
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTF 128
L LD L+NN+ ++ ++ L
Sbjct: 80 ---------------------STLRTLD-------LNNNYVQELL----VGPSIETL--- 104
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN-- 186
+ N+++ + ++ L+ N
Sbjct: 105 --------HAANNNIS------------RVSCSRGQG------------KKNIYLANNKI 132
Query: 187 --FPNWLVENNTNLETLLLANNSLFG-SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY 243
+ + ++ L L N + +F S L L++ NF + ++
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--V 189
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L L+LS N + F + + + N+L I + + LE L
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRG 246
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG 363
N + F N + + C + + +
Sbjct: 247 NGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305
Query: 364 NLSALEDIRMSNNNLEG----PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF-IEQV 418
L AL+ + + +G + E +D + +
Sbjct: 306 RLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITL 365
Query: 419 HLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478
K ++ Q+ + L P + Y E +
Sbjct: 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVE 425
Query: 479 VQLCELKEVRLIDLSHNNLS 498
Q + +R D+ + +
Sbjct: 426 QQSVQNNAIRDWDMYQHKET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 8e-24
Identities = 64/474 (13%), Positives = 131/474 (27%), Gaps = 72/474 (15%)
Query: 37 HNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLD 96
N + + S L + S S ++K L + + + D F LE L+
Sbjct: 7 QNGNRYKIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLN 64
Query: 97 MGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVT---PKFQLTSIS 153
LS+N ++ L +LS L+T D + N V + ++
Sbjct: 65 -------LSSNVLYETL----DLESLSTLRTLDL--------NNNYVQELLVGPSIETLH 105
Query: 154 LSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLETLLLAN 205
+ + ++ L+ N + + ++ L L
Sbjct: 106 AANNNISRVSCSRGQG------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 206 NSLFG-SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS 264
N + +F S L L++ NF + ++ L L+LS N +
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPE 209
Query: 265 FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQ 324
F + + + N+L I + + LE L N + F N
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQT 266
Query: 325 LDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPI 384
+ + C + + + L AL
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL---------------- 310
Query: 385 EFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDL 444
+ +L + + A ++ K + ++ + +TL+
Sbjct: 311 ---KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367
Query: 445 SYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
+ N +L L + E+ E ++L+
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAV-GQIELQHATEEQSPLQLLRAIVKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 5e-17
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 19/170 (11%)
Query: 334 ISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLT 393
I + N ++D+ L + + ++++ +S N L + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 394 ILDLSNNAI-----FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNR 448
+L+LS+N + +L + + + L+ N + + P + TL + N
Sbjct: 62 LLNLSSNVLYETLDLESLST------LRTLDLNNNYV-----QELLVGPSIETLHAANNN 110
Query: 449 FHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
+ + ++ L NN I + V+ +DL N +
Sbjct: 111 IS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 41/394 (10%), Positives = 101/394 (25%), Gaps = 62/394 (15%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
+Q + PS++TL+ + N + + + L + + + + L + +
Sbjct: 92 VQELLVGPSIETLHAANNNIS----RVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRV 146
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGW---------------VQLILSNNHFFQI 112
+YL ++ + + LEHL++ + L LS+N +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206
Query: 113 PISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHD 172
+ ++ + N +L I K L +
Sbjct: 207 GPEFQSAAGVTWISL-----------RNN------KLVLI-----------EKALRFSQN 238
Query: 173 LKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFF 232
L++ DL N ++T +A ++ +
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYGAYC- 295
Query: 233 QGHIPVEIGTYLPGLMDLNLSRNAFN-------GSIPSSFADMKMLERLDISYNQLTGEI 285
+ L+ L +A + + +D Q +
Sbjct: 296 ---CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TV 351
Query: 286 PERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLA 345
+++ L L + + + L + L
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQL 411
Query: 346 GLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLE 379
+ + + + +A+ D M +
Sbjct: 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
++ + L + + + L+LS N L+ + ++E L+LS N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLS 652
+L+ L L+TL + N +
Sbjct: 69 VLYE--TLDLESLSTLRTLDLNNNYVQ 93
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Query: 564 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDL 622
I L+ NK+T G +R+ L+L N + ++ +E L+L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 623 SYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFS 663
YN ++ + Q+ L ++ N L+ + +
Sbjct: 177 QYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAA 214
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 13/71 (18%), Positives = 26/71 (36%)
Query: 583 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLA 642
I R ++ ++L + + + ++ LDLS N L + L L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 643 VFKVAYNNLSG 653
+ ++ N L
Sbjct: 62 LLNLSSNVLYE 72
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 10/71 (14%), Positives = 24/71 (33%)
Query: 429 LESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVR 488
+ I + ++ + ++ + + L L N + L ++
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 489 LIDLSHNNLSG 499
L++LS N L
Sbjct: 62 LLNLSSNVLYE 72
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 30/283 (10%), Positives = 75/283 (26%), Gaps = 25/283 (8%)
Query: 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFT 65
++ LKTL LS + E + + + L + L + ++
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQ 237
Query: 66 SLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKL 125
+L++ ++ + F F K + ++ + ++ E + L
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA---------KQTVKKLTGQNEEECTVPTL 288
Query: 126 KTFDGEIWAETESHYNSVTPKFQLTSISLSG--YIDGGTFPKFLYHQHDLKNADLSHLNL 183
+ + + + + +L + +Q + D
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348
Query: 184 SGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY 243
+ + TL +L S + A ++ Q +E+
Sbjct: 349 R-TVIDQVTLRKQAKITLEQKKKAL-----DEQVSNGRRAHAELDGTLQQAVGQIELQHA 402
Query: 244 LPGLMDLNLSRNAFN----GSIPSSFADMKMLERLDISYNQLT 282
L L R + + D+ ++ T
Sbjct: 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
S+ + + N ++ + + L++N +T +++ LDL N
Sbjct: 98 GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 626 LLH----GKIPSQLTVLNTLAVFKVAYNNLS 652
+ ++ + L L + YN +
Sbjct: 155 EIDTVNFAELAASSDTLEHL---NLQYNFIY 182
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 12/87 (13%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L+++ +DL+ N + ++ I L+ ++NN++ + K ++ L+ N
Sbjct: 79 LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANN 130
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLS 652
+ + + + N +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEID 157
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-34
Identities = 89/491 (18%), Positives = 163/491 (33%), Gaps = 73/491 (14%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
+ + +L L TN T TV + + L D+ + + + +L
Sbjct: 17 IFTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKS---IDGVEYLNNL 70
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
++ ++ + L + ++NN + PL NL+ L
Sbjct: 71 TQINFSNNQLTDI---TPLKNLTKLVDIL-------MNNNQI----ADITPLANLTNLTG 116
Query: 128 FDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNF 187
N Q+T I L + +L +LS +S +
Sbjct: 117 LT--------LFNN------QITDID------------PLKNLTNLNRLELSSNTIS-DI 149
Query: 188 PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL 247
+ T+L+ L N P+ + L LD+S N + + L L
Sbjct: 150 SA--LSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVSD---ISVLAKLTNL 201
Query: 248 MDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ 307
L + N + P + L+ L ++ NQL T L L L+NN +
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTN---LTDLDLANNQIS 256
Query: 308 GHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSA 367
+ LT L L+L N + L+ L L L++N L P + NL
Sbjct: 257 N--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKN 310
Query: 368 LEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEG 427
L + + NN+ P+ L L L NN + + S + I + N+I
Sbjct: 311 LTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQISD 367
Query: 428 QLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEV 487
L + + + L L+ + + N+ + +++ + P + +
Sbjct: 368 -LTPLAN-LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSY 423
Query: 488 RLIDLSHNNLS 498
D++ N S
Sbjct: 424 TEPDITWNLPS 434
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-32
Identities = 85/465 (18%), Positives = 155/465 (33%), Gaps = 79/465 (16%)
Query: 198 LETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAF 257
L + + ++ + + + K + L + L R
Sbjct: 3 LGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRL-- 56
Query: 258 NGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNL 317
+ L +++ S NQLT P L + ++NN + + NL
Sbjct: 57 GIKSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIAD--ITPLANL 111
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
TNL L L N T D L N L L LS N +S L L++L+ + N
Sbjct: 112 TNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV 167
Query: 378 LEGPIPIEFCQLDYLTILDLSNNAI-----FGTLPSCFSPAFIEQVHLSKNKIEGQLESI 432
+ L L LD+S+N + L + +E + + N+I +
Sbjct: 168 TD---LKPLANLTTLERLDISSNKVSDISVLAKLTN------LESLIATNNQISD--ITP 216
Query: 433 IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDL 492
+ L L L+ N+ I + L L+ L L NN I P L L ++ + L
Sbjct: 217 LGILTNLDELSLNGNQLK-DIGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272
Query: 493 SHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQF 552
N +S P + T+L T++ + + +
Sbjct: 273 GANQISNISPLAGL-TAL----------TNLELNENQLEDISPISN-------------- 307
Query: 553 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFS 612
L +++ + L N ++ P + LT++ L +N ++ ++ +
Sbjct: 308 -------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLA 350
Query: 613 NLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
NL I L +N + P L L + + + +
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 7e-31
Identities = 87/503 (17%), Positives = 158/503 (31%), Gaps = 106/503 (21%)
Query: 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFT 65
K + + L +L + S T L N T L +++++ + + ++ +A+ T
Sbjct: 59 KSIDGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIAD---ITPLANLT 112
Query: 66 SLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKL 125
+L L++ ++ + NL L+ LS+N + L L+ L
Sbjct: 113 NLTGLTLFNNQITDI---DPLKNLTNLNRLE-------LSSNTI----SDISALSGLTSL 158
Query: 126 KTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG 185
+ N L+
Sbjct: 159 QQL-------------------------------------------SFGNQVTDLKPLA- 174
Query: 186 NFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLP 245
N T LE L +++N + S + L L + N P+ L
Sbjct: 175 --------NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG---ILT 221
Query: 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNN 305
L +L+L+ N + A + L LD++ NQ++ P +G L L L N
Sbjct: 222 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQ 276
Query: 306 LQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNL 365
+ S LT L L+L+ N +SN + L L L N++S P + +L
Sbjct: 277 ISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSL 330
Query: 366 SALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI-----FGTLPSCFSPAFIEQVHL 420
+ L+ + NN + + L + L +N I L I Q+ L
Sbjct: 331 TKLQRLFFYNNKVSDVSSLA--NLTNINWLSAGHNQISDLTPLANLTR------ITQLGL 382
Query: 421 SKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSI-PNWINILPQLSSLLLGNNYIEGEIPV 479
+ + + + + N I P I+ + + N
Sbjct: 383 NDQAWTNAPVNYKAN---VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNE 438
Query: 480 QLCELKEVRLIDLSHNNLSGYIP 502
+ I SG +
Sbjct: 439 VSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-27
Identities = 94/483 (19%), Positives = 161/483 (33%), Gaps = 97/483 (20%)
Query: 178 LSHLNLSGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQ 233
++ L VE NL + +NN L P+ + KL + ++ N
Sbjct: 48 VTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIA 103
Query: 234 GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGC 293
P+ L L L L N P ++ L RL++S N ++ +G
Sbjct: 104 DITPLA---NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL---SGL 155
Query: 294 FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353
L+ L+ N + NLT L RL + N + L+ L L ++N
Sbjct: 156 TSLQQLSFGNQVTDLKPLA---NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ 210
Query: 354 LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPA 413
+S P LG L+ L+++ ++ N L+ + L LT LDL+NN I L
Sbjct: 211 ISDITP--LGILTNLDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQI-SNLAPLSGLT 265
Query: 414 FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYI 473
+ ++ L N+I S + L L+L+ N+ P I+ L L+ L L N I
Sbjct: 266 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321
Query: 474 EGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGS 533
P + L +++ + +NN + + T++ + +
Sbjct: 322 SDISP--VSSLTKLQRLFF-YNNKVSDVSSLANLTNI----------NWLSAGHNQISDL 368
Query: 534 PCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI 593
L LT ++ + L+ T Y +
Sbjct: 369 TPLAN---------------------------LTRITQLGLNDQAWTNAPVN---YKANV 398
Query: 594 HALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLL-----------------------HG 629
N N I P T S+ D+++NL G
Sbjct: 399 SIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSG 458
Query: 630 KIP 632
+
Sbjct: 459 TVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 53/313 (16%), Positives = 96/313 (30%), Gaps = 80/313 (25%)
Query: 342 RLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNA 401
L + D ++ L+ + N+ + LD +T L
Sbjct: 2 PLGSATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLG 57
Query: 402 IFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILP 461
I I+G + L ++ S N+ P + L
Sbjct: 58 I--------------------KSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLT 90
Query: 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPT 521
+L +L+ NN I P L L + + L +N ++ I T+L
Sbjct: 91 KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNL----------N 137
Query: 522 SIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG 581
+ ++ L LTS+ + N++T
Sbjct: 138 RLELSSNTISDISALSG---------------------------LTSLQQLSFG-NQVTD 169
Query: 582 EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP-SQLTVLNT 640
P + LT + L++S N ++ + + L +ESL + N + P LT L+
Sbjct: 170 LKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDE 225
Query: 641 LAVFKVAYNNLSG 653
L + N L
Sbjct: 226 L---SLNGNQLKD 235
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
LT+++ + N+++ P + LTRI L L+ T +N+ ++
Sbjct: 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGK 654
L P+ ++ + + +N S
Sbjct: 410 ALI--APATISDGGSYTEPDITWNLPSYT 436
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-32
Identities = 68/336 (20%), Positives = 137/336 (40%), Gaps = 36/336 (10%)
Query: 170 QHDLKNADLSHLNLSGNFPNWL--VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227
Q +L++ ++ L ++G + +E TNLE L L N + P+ + KL L +
Sbjct: 40 QEELES--ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYI 95
Query: 228 SKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPE 287
N ++ L L +L L+ + + P A++ + L++ N ++
Sbjct: 96 GTNKITDISALQ---NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150
Query: 288 RMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347
+ L L ++ + ++ NLT+L L L+ N L++ L
Sbjct: 151 --LSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIED--ISPLASLTSLHYF 204
Query: 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI----- 402
N ++ P + N++ L +++ NN + P+ L LT L++ N I
Sbjct: 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISDINA 260
Query: 403 FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQ 462
L ++ +++ N+I S++++ L +L L+ N+ I L
Sbjct: 261 VKDLTK------LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312
Query: 463 LSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
L++L L N+I P L L ++ D ++ +
Sbjct: 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-32
Identities = 65/332 (19%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 178 LSHLNLSGNFPNWLV--ENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGH 235
L +V E ++ L++A + + I L L+++ N
Sbjct: 24 GIRAVLQKASVTDVVTQEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQITDI 81
Query: 236 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL 295
P+ L L +L + N + S+ ++ L L ++ + ++ P
Sbjct: 82 SPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP---LANLTK 133
Query: 296 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355
+ L L N+ + S N+T L L + + ++N L L L+ N +
Sbjct: 134 MYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIE 190
Query: 356 GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI-----FGTLPSCF 410
P L +L++L N + P+ + L L + NN I L
Sbjct: 191 DISP--LASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITDLSPLANLSQ-- 244
Query: 411 SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGN 470
+ + + N+I + ++ D L L++ N+ I +N L QL+SL L N
Sbjct: 245 ----LTWLEIGTNQISD-INAV-KDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNN 296
Query: 471 NYIEGEIPVQLCELKEVRLIDLSHNNLSGYIP 502
N + E + L + + LS N+++ P
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-31
Identities = 68/397 (17%), Positives = 128/397 (32%), Gaps = 64/397 (16%)
Query: 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFT 65
+ L L + T V ++ +L++ + + I T
Sbjct: 13 NQIFPDADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVAS---IQGIEYLT 66
Query: 66 SLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKL 125
+L+YL++ + L +L + N + L NL+ L
Sbjct: 67 NLEYLNLNGNQITDI---SPLSNLVKLTNLY-------IGTNKI----TDISALQNLTNL 112
Query: 126 KTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG 185
+ + + ++ IS L + + + +L +
Sbjct: 113 RELY--------LNED------NISDIS------------PLANLTKMYSLNLGANHNLS 146
Query: 186 NFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLP 245
+ + N T L L + + + PI + L L ++ N + P+ L
Sbjct: 147 DLSP--LSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISPLA---SLT 199
Query: 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNN 305
L N P A+M L L I N++T P L L + N
Sbjct: 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQ 254
Query: 306 LQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNL 365
+ + +LT L L + N + L+N L L+L++N L +G L
Sbjct: 255 ISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310
Query: 366 SALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402
+ L + +S N++ P+ L + D +N I
Sbjct: 311 TNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 1e-28
Identities = 68/338 (20%), Positives = 122/338 (36%), Gaps = 37/338 (10%)
Query: 173 LKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFF 232
++ FP + +L S+ + + + L V+
Sbjct: 2 AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKV 56
Query: 233 QGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATG 292
+E YL L LNL+ N P +++ L L I N++T +I
Sbjct: 57 ASIQGIE---YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQN 108
Query: 293 CFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN 352
L L L+ +N+ S NLT + L L N+ ++S LSN L L ++++
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES 165
Query: 353 HLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI-----FGTLP 407
+ P + NL+ L + ++ N +E P L L N I +
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMT 221
Query: 408 SCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467
+ + + NKI L + + L L++ N+ I + L +L L
Sbjct: 222 R------LNSLKIGNNKITD-LSPL-ANLSQLTWLEIGTNQIS-DINA-VKDLTKLKMLN 271
Query: 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505
+G+N I L L ++ + L++N L +
Sbjct: 272 VGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVI 307
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 45/266 (16%), Positives = 84/266 (31%), Gaps = 52/266 (19%)
Query: 392 LTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHG 451
L I + A + L K + + + L ++ +
Sbjct: 2 AATLATLPAPI-NQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA- 57
Query: 452 SIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLG 511
SI I L L L L N I P L L ++ + + N I A T+L
Sbjct: 58 SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIG-TNKITDISALQNLTNL- 112
Query: 512 EDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSG 571
++ + ++ L LT M
Sbjct: 113 ---------RELYLNEDNISDISPLAN---------------------------LTKMYS 136
Query: 572 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 631
++L N ++ + +T ++ L ++ + + P +NL + SL L+YN +
Sbjct: 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193
Query: 632 P-SQLTVLNTLAVFKVAYNNLSGKIP 656
P + LT L+ + N ++ P
Sbjct: 194 PLASLTSLHYFTAYV---NQITDITP 216
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L+ ++ +++ N+++ + LT++ LN+ N ++ + +NL Q+ SL L+ N
Sbjct: 242 LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIP 656
L + + L L ++ N+++ P
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
LT + +++ N+++ + + L+++++L L++N L L + +L LS N
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLS 652
+ P L L+ + A +
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
LTS+ N++T P + +TR+++L + +N +T P +NL Q+ L++ N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSG 653
+ + + L L + V N +S
Sbjct: 254 QISD--INAVKDLTKLKMLNVGSNQISD 279
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 2e-32
Identities = 65/330 (19%), Positives = 122/330 (36%), Gaps = 33/330 (10%)
Query: 178 LSHLNLSGN----FPNWLVENNTNLETLLLANNSL----FGSFRMPIHSYQKLAILDVSK 229
+ + P L+++ +E L L + + +F + L +
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGF 102
Query: 230 NFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERM 289
N + ++P + +P L L L RN + F + L L +S N L I +
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160
Query: 290 ATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYL 349
L+ L LS+N L S + +L + N + +L+ + L
Sbjct: 161 FQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLS-----TLAIPIAVEELDA 212
Query: 350 SDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSC 409
S N ++ + L +++ +NNL L +DLS N + +
Sbjct: 213 SHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHP 267
Query: 410 FSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLL 468
F +E++++S N++ L P L LDLS+N + +L +L L
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325
Query: 469 GNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
+N I + + ++ + LSHN+
Sbjct: 326 DHNSIV-TLKLST--HHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 6e-32
Identities = 66/324 (20%), Positives = 131/324 (40%), Gaps = 24/324 (7%)
Query: 180 HLNLSGN--FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIP 237
H+++ + + N + + N+++ + S++++ +L+++ + I
Sbjct: 27 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EID 85
Query: 238 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLE 297
Y + L + NA P F ++ +L L + N L+ +P + L
Sbjct: 86 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144
Query: 298 ILALSNNNL---QGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354
L++SNNNL + F T+L LQL N T + + L +S N L
Sbjct: 145 TLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLL 198
Query: 355 SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF 414
S L A+E++ S+N++ + LTIL L +N + +
Sbjct: 199 ST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNL-TDTAWLLNYPG 249
Query: 415 IEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIE 474
+ +V LS N++E + L L +S NR ++ + +P L L L +N++
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308
Query: 475 GEIPVQLCELKEVRLIDLSHNNLS 498
+ + + + L HN++
Sbjct: 309 -HVERNQPQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-29
Identities = 61/308 (19%), Positives = 115/308 (37%), Gaps = 21/308 (6%)
Query: 194 NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS 253
+ + + + F + I+ + + +P + + LNL+
Sbjct: 19 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77
Query: 254 RNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ---GHI 310
+FA +++L + +N + +P + LL +L L N+L I
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136
Query: 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALED 370
F N L L + NN D+ L L LS N L+ + L + +L
Sbjct: 137 FH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 190
Query: 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLE 430
+S N L + LD S+N+I + + L N +
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNNLTD--T 241
Query: 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLI 490
+ + + P LV +DLSYN + + + +L L + NN + + + + ++++
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300
Query: 491 DLSHNNLS 498
DLSHN+L
Sbjct: 301 DLSHNHLL 308
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-27
Identities = 79/455 (17%), Positives = 156/455 (34%), Gaps = 91/455 (20%)
Query: 32 VNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKN 91
++ L ++ +D V I + + K ++ ++S + L F+
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70
Query: 92 LEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTS 151
+E L+ L++ +I ++ +N++
Sbjct: 71 VELLN-------LNDLQIEEIDTYA--FAYAHTIQKLY--------MGFNAIR------- 106
Query: 152 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLETLLLANNS 207
Y+ F ++ L+ L L N P + N L TL ++NN+
Sbjct: 107 -----YLPPHVF-------QNVPL--LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152
Query: 208 LFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 267
L I + L +L LS N + +
Sbjct: 153 L-------------------------ERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSL 184
Query: 268 MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDG 327
+ L ++SYN L+ + +A +E L S+N++ + L L+L
Sbjct: 185 IPSLFHANVSYNLLS-TLAIPIA-----VEELDASHNSIN-VVRGPVN--VELTILKLQH 235
Query: 328 NNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC 387
NN T + L N L + LS N L + + LE + +SNN L + +
Sbjct: 236 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ 292
Query: 388 QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS-PYLVTLDLSY 446
+ L +LDLS+N + + +E ++L N + ++ + L L LS+
Sbjct: 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSH 348
Query: 447 NRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481
N + + + + ++ + + +I QL
Sbjct: 349 NDWDCN--SLRALFRNVARPAVDDADQHCKIDYQL 381
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-24
Identities = 74/407 (18%), Positives = 133/407 (32%), Gaps = 68/407 (16%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSI-ASFTSLKYLS 71
+L + K + + + L +F +E L L +DL + ++ + A +++ L
Sbjct: 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLY 99
Query: 72 MQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGE 131
M + + L F+ L L L N +P + N KL T
Sbjct: 100 MGFNAIR-YLPPHVFQNVPLLTVLV-------LERNDLSSLPRGI--FHNTPKLTTLS-- 147
Query: 132 IWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWL 191
N L I+ TF + L +L LS N +
Sbjct: 148 ------MSNN------NLER------IEDDTF-------QATTS--LQNLQLSSNRLTHV 180
Query: 192 VENN-TNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDL 250
+ +L ++ N L + + LD S N + + L L
Sbjct: 181 DLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTIL 231
Query: 251 NLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310
L N + + + L +D+SYN+L +I LE L +SNN L +
Sbjct: 232 KLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-AL 287
Query: 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALED 370
+ L L L N+ + + L LYL N + + L L++
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKN 343
Query: 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQ 417
+ +S+N+ + +++ A+ C +E
Sbjct: 344 LTLSHNDWD-----CNSLRALFR--NVARPAVDDADQHCKIDYQLEH 383
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 6e-19
Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 22/221 (9%)
Query: 285 IPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLL 344
I + C + + + + + L N + + + L + R +
Sbjct: 13 IDSNLQYDCVFYD-VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71
Query: 345 AGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI-- 402
L L+D + ++ + M N + P F + LT+L L N +
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 403 -----FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWI 457
F P + + +S N +E + + L L LS NR + +
Sbjct: 132 LPRGIFHNTPK------LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--L 182
Query: 458 NILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
+++P L + N + L V +D SHN+++
Sbjct: 183 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 218
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ ++ + L N L+ +P I ++ L++S+NNL TF +++L LS
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
N L + L+++ +L V+YN LS
Sbjct: 175 NRLT-HVD--LSLIPSLFHANVSYNLLS 199
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ ++ + L N LT + + + ++LS+N L + F ++++E L +S
Sbjct: 224 VNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFS 663
N L + + TL V +++N+L + QF
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ ++L+ ++ EI T Y I L + N + P F N+ + L L
Sbjct: 68 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV 659
N L L ++ NNL +I D
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
+ ++ +DLS N L + R+ L L HN++ T+ S +++L LS+N
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 349
Query: 626 LLH 628
Sbjct: 350 DWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 30/200 (15%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
L ++ +++ L S+ + L L L ++L + + ++ L
Sbjct: 198 LSTLAIPIAVEELDASHNSIN----VVRGPVNVELTILKLQHNNLTD---TAWLLNYPGL 250
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
+ + + + + F K + LE L +SNN + + +P+ L L
Sbjct: 251 VEVDLSYNELE-KIMYHPFVKMQRLERLY-------ISNNRLVALNLYGQPIPTLKVLDL 302
Query: 128 FDGEIWAETESHYNSVTPKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNL 183
+ + +L ++ L + T LKN LSH +
Sbjct: 303 SHNHL----LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT-------LKNLTLSHNDW 351
Query: 184 SGNFPNWLVENNTNLETLLL 203
N L N
Sbjct: 352 DCNSLRALFRNVARPAVDDA 371
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-31
Identities = 64/339 (18%), Positives = 122/339 (35%), Gaps = 25/339 (7%)
Query: 170 QHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSK 229
+ P + T L L N + + S+ L L++++
Sbjct: 10 SAQDRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65
Query: 230 NFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPER 288
N + L L L L N IP F + L +LDIS N++ + +
Sbjct: 66 NIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDY 122
Query: 289 MATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347
M + L+ L + +N+L +I + F L +L +L L+ N T +++LS+ L L
Sbjct: 123 MFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181
Query: 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI----- 402
L +++ L L+ + +S+ + LT L +++ +
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241
Query: 403 --FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINIL 460
L + ++LS N I S++H+ L + L + P L
Sbjct: 242 LAVRHLVY------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295
Query: 461 PQLSSLLLGNNYIEGEIPVQLCE-LKEVRLIDLSHNNLS 498
L L + N + + + + + + L N L+
Sbjct: 296 NYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 74/374 (19%), Positives = 135/374 (36%), Gaps = 84/374 (22%)
Query: 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLS 123
T + L + + K L+ +F F +LE L+ L+ N + NL
Sbjct: 31 PTETRLLDLGKNRIK-TLNQDEFASFPHLEELE-------LNENIVSAVEPGA--FNNLF 80
Query: 124 KLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL 183
L+T N +L I G F L N L+ L++
Sbjct: 81 NLRTLG--------LRSN------RLKLIP------LGVF-------TGLSN--LTKLDI 111
Query: 184 SGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239
S N +++ ++ NL++L + +N ++ +S F G
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDND----------------LVYISHRAFSG----- 150
Query: 240 IGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298
L L L L + SIP+ + + + L L + + + I + + L++
Sbjct: 151 ----LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKV 204
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRI 358
L +S+ + NL L + N T ++ + L L LS N +S
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI-------FGTLPSCFS 411
L L L++I++ L P F L+YL +L++S N + F ++ +
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN--- 321
Query: 412 PAFIEQVHLSKNKI 425
+E + L N +
Sbjct: 322 ---LETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 76/393 (19%), Positives = 118/393 (30%), Gaps = 97/393 (24%)
Query: 15 PSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQD 74
+ L L T+ E +F +LEEL L+++ +S++
Sbjct: 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI------VSAVEPGA--------- 75
Query: 75 SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWA 134
F NL L L +N IP+ + LS L D
Sbjct: 76 -----------FNNLFNLRTLG-------LRSNRLKLIPLGV--FTGLSNLTKLD----- 110
Query: 135 ETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNW 190
N + + F DL N L L + N +
Sbjct: 111 ---ISENKIV------------ILLDYMF-------QDLYN--LKSLEVGDNDLVYISHR 146
Query: 191 LVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDL 250
+LE L L +L IP E ++L GL+ L
Sbjct: 147 AFSGLNSLEQLTLEKCNL-------------------------TSIPTEALSHLHGLIVL 181
Query: 251 NLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310
L N SF + L+ L+IS+ + G L L++++ NL +
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS-LSITHCNLT-AV 239
Query: 311 FSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALE 369
+L L L L N + L L + L L+ P L+ L
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299
Query: 370 DIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402
+ +S N L F + L L L +N +
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 1e-19
Identities = 73/435 (16%), Positives = 118/435 (27%), Gaps = 105/435 (24%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
S P L+ L L+ + V +N NL L L + L
Sbjct: 54 SFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK------------------- 93
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIP-ISLEPLFNLSKLKTFDGE 131
+ F NL LD +S N + + L+NL L+
Sbjct: 94 -------LIPLGVFTGLSNLTKLD-------ISENKIVILLDYMFQDLYNLKSLEV---- 135
Query: 132 IWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----F 187
N + YI F L + L L L
Sbjct: 136 -------GDNDLV------------YISHRAF-------SGLNS--LEQLTLEKCNLTSI 167
Query: 188 PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL 247
P + + L L L + + I + F+ L L
Sbjct: 168 PTEALSHLHGLIVLRLRHLN----------------INAIRDYSFKR---------LYRL 202
Query: 248 MDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ 307
L +S + ++ + L L I++ LT +P L L LS N +
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261
Query: 308 GHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLS 366
I L L +QL G + L L +S N L+ ++
Sbjct: 262 -TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 367 ALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE 426
LE + + +N L C+L ++ P+C +P F++
Sbjct: 321 NLETLILDSNPL-----ACDCRLLWV-FRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDV 374
Query: 427 GQLESIIHDSPYLVT 441
+
Sbjct: 375 LLPNYFTCRRARIRD 389
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 1e-17
Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 3/188 (1%)
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
T L L N D ++ L L L++N +S P NL L + + +N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 378 LEGPIPIE-FCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHD 435
L+ IP+ F L LT LD+S N I L F ++ + + N +
Sbjct: 92 LKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495
L L L ++ L L L L + I L ++++++SH
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 496 NLSGYIPA 503
+
Sbjct: 211 PYLDTMTP 218
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L S+ + L LT IPT+ +L + L L H N+ +F L +++ L++S+
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV 659
+ L + + NL+ +P
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L ++ + L N+L IP + L+ + L++S N + + F +L ++SL++
Sbjct: 79 LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 625 NLLHGKIPSQ-LTVLNTLAVFKVAYNNLSGKIPDRV 659
N L I + + LN+L + NL+ IP
Sbjct: 138 NDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEA 171
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
I T +DL N++ + + L L+ N ++ P F+NL + +L L
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 625 NLLHGKIPSQ-LTVLNTLAVFKVAYNNLSGKIPDRV 659
N L IP T L+ L ++ N + + D +
Sbjct: 90 NRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYM 123
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 19/87 (21%), Positives = 36/87 (41%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L + +++S + Y + +L+++H NLT +L + L+LSYN
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLS 652
+ S L L L ++ L+
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLA 285
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 53/268 (19%), Positives = 100/268 (37%), Gaps = 29/268 (10%)
Query: 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298
EI ++ ++ ++ S ++ LD+S N L+ +I LE+
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRI 358
L LS+N L +L+ L L L+ N L + L+ ++N++S R+
Sbjct: 63 LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RV 114
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI--------FGTLPSCF 410
++I ++NN + ++ + LDL N I + +
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-- 170
Query: 411 SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGN 470
+E ++L N I ++ + L TLDLS N+ + ++ + L N
Sbjct: 171 ----LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223
Query: 471 NYIEGEIPVQLCELKEVRLIDLSHNNLS 498
N + I L + + DL N
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-29
Identities = 48/309 (15%), Positives = 99/309 (32%), Gaps = 41/309 (13%)
Query: 191 LVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDL 250
+ +N + + ++SL + + +L
Sbjct: 5 IKQNGNRYKIEKVTDSSL-------------------------KQALASLRQSAWNVKEL 39
Query: 251 NLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310
+LS N + + A LE L++S N L E + L L L+NN +
Sbjct: 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYV---- 92
Query: 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALED 370
+ ++ L NN + +YL++N ++ G S ++
Sbjct: 93 -QELLVGPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQY 148
Query: 371 IRMSNNNLEG-PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQL 429
+ + N ++ D L L+L N I+ + A ++ + LS NK+ +
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FM 206
Query: 430 ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRL 489
+ + + L N+ I + L L N ++ K R+
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRV 264
Query: 490 IDLSHNNLS 498
++ +
Sbjct: 265 QTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 51/255 (20%), Positives = 93/255 (36%), Gaps = 31/255 (12%)
Query: 260 SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLT 318
+I + + ++ + L + + + ++ L LS N L I + T
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS-QISAADLAPFT 58
Query: 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378
L L L N E D L + L L L++N++ L ++E + +NNN+
Sbjct: 59 KLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI 111
Query: 379 EGPIPIEFCQLDYLTILDLSNNAI-------FGTLPSCFSPAFIEQVHLSKNKIEG-QLE 430
+ Q + L+NN I G ++ + L N+I+
Sbjct: 112 SR-VSCSRGQG--KKNIYLANNKITMLRDLDEGCRSR------VQYLDLKLNEIDTVNFA 162
Query: 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLI 490
+ S L L+L YN + + + +L +L L +N + + + V I
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219
Query: 491 DLSHNNLSGYIPACL 505
L +N L I L
Sbjct: 220 SLRNNKLV-LIEKAL 233
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 42/247 (17%), Positives = 77/247 (31%), Gaps = 32/247 (12%)
Query: 178 LSHLNLSGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQ 233
+ L+LSGN + T LE L L++N L+ + + S L LD++ N+ Q
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQ 93
Query: 234 ------------------GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLD 275
+ G ++ L+ N ++ LD
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 276 ISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEIS 335
+ N++ +A LE L L N + + L L L N +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMG 207
Query: 336 DSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTIL 395
+ + + L +N L I + L LE + N + +
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQ 265
Query: 396 DLSNNAI 402
++ +
Sbjct: 266 TVAKQTV 272
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 9e-15
Identities = 56/352 (15%), Positives = 107/352 (30%), Gaps = 68/352 (19%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
S ++K L LS + + +L FT LE L L + L+ + S ++L+
Sbjct: 28 SLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYE---TLDLESLSTLR 83
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTF 128
L + ++ Q+ ++E L +NN+ ++ S +
Sbjct: 84 TLDLNNNYV------QELLVGPSIETLH-------AANNNISRVSCSR--GQGKKNIY-- 126
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNF- 187
N ++T + + +L+L N
Sbjct: 127 ---------LANN------KITMLR------DLDE-------GCRSR--VQYLDLKLNEI 156
Query: 188 ----PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY 243
L ++ LE L L N + + KL LD+S N + E
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQ-S 212
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
G+ ++L N I + + LE D+ N + ++ +A
Sbjct: 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355
++ + L + E + RL+A L +H
Sbjct: 272 VKKLTGQNEEECTVPTLGHY----GAYCCEDLPAPFADRLIA---LGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
++ + L + + + L+LS N L+ + ++E L+LS N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLS 652
+L+ L L+TL + N +
Sbjct: 69 VLYE--TLDLESLSTLRTLDLNNNYVQ 93
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 4/108 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
+ +DLS NKL + + + ++L +N L I + +E DL N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGN 673
H + V VA + K+ + + T + G
Sbjct: 248 GFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA 293
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLS 623
I L+ NK+T G +R+ L+L N + ++ +E L+L
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 624 YNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFS 663
YN ++ + V L ++ N L+ + +
Sbjct: 178 YNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAA 214
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 13/70 (18%), Positives = 26/70 (37%)
Query: 583 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLA 642
I R ++ ++L + + + ++ LDLS N L + L L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 643 VFKVAYNNLS 652
+ ++ N L
Sbjct: 62 LLNLSSNVLY 71
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
S+ + + N ++ + + L++N +T +++ LDL N
Sbjct: 98 GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 626 LLH----GKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
+ ++ + L L + YN + +
Sbjct: 155 EIDTVNFAELAASSDTLEHL---NLQYNFIY-DVKG 186
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 28/215 (13%), Positives = 64/215 (29%), Gaps = 48/215 (22%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
+Q + PS++TL+ + N + + + L + + + + L + +
Sbjct: 92 VQELLVGPSIETLHAANNNIS----RVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRV 146
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGW---------------VQLILSNNHFFQI 112
+YL ++ + + LEHL++ + L LS+N +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206
Query: 113 PISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHD 172
+ ++ + N +L I K L +
Sbjct: 207 GPEFQSAAGVTWISL-----------RNN------KLVLI-----------EKALRFSQN 238
Query: 173 LKNADLSHLNLSGNFPNWLVENNTNLETLLLANNS 207
L++ DL N ++T+
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 12/87 (13%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L+++ +DL+ N + ++ I L+ ++NN++ + K ++ L+ N
Sbjct: 79 LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANN 130
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLS 652
+ + + + N +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEID 157
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 8e-31
Identities = 55/351 (15%), Positives = 102/351 (29%), Gaps = 55/351 (15%)
Query: 149 LTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSL 208
++ G + L NAD + + + N N + +L
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRAL 68
Query: 209 ------FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIP 262
P L++ P + L L + + +P
Sbjct: 69 KATADLLEDATQP-----GRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELP 120
Query: 263 SSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNL---------QGHIFSK 313
+ LE L ++ N L +P +A+ L L++ +
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 314 KFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
L NL L+L+ + S++N + L L + ++ LS + + +L LE++ +
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESII 433
P F L L L + + TLP +L
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI----------------HRLTQ-- 278
Query: 434 HDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCEL 484
L LDL +P+ I LP +L+ + +
Sbjct: 279 -----LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-29
Identities = 58/345 (16%), Positives = 105/345 (30%), Gaps = 49/345 (14%)
Query: 166 FLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAIL 225
+H +N + + L + + A+ + + S +S I
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANS-NNPQIE 61
Query: 226 DVSKNFFQGHIPVEIGT-YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGE 284
+ + + PG + L L P + L+ + I L E
Sbjct: 62 TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118
Query: 285 IPERMATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRL 343
+P+ M LE L L+ N L+ +L L L + E+ + L++
Sbjct: 119 LPDTMQQ-FAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 344 LAG---------LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTI 394
L L + +P + NL L+ +++ N+ L + L L
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233
Query: 395 LDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLS-YNRFHGSI 453
LDL P F G L L L + ++
Sbjct: 234 LDLRGCTALRNYPPIF----------------GGRAP-------LKRLILKDCSNLL-TL 269
Query: 454 PNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
P I+ L QL L L +P + +L +I + + +
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 1e-23
Identities = 43/362 (11%), Positives = 96/362 (26%), Gaps = 82/362 (22%)
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
+ + L G+ D LS + + H + R N + + +
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65
Query: 376 NNLEG-PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIH 434
L+ +E L+L + + P +L
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPL-PQFPDQA----------------FRLSH--- 105
Query: 435 DSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSH 494
L + + +P+ + L +L L N + +P + L +R + +
Sbjct: 106 ----LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159
Query: 495 NNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTT 554
+P L
Sbjct: 160 CPELTELPEPL------------------------------------------------- 170
Query: 555 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 614
+ + + L ++ + L + +P I L + +L + ++ L+ + +L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228
Query: 615 KQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNP 674
++E LDL P L + + +P + + + E+ G
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288
Query: 675 FL 676
L
Sbjct: 289 NL 290
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 8e-23
Identities = 59/391 (15%), Positives = 102/391 (26%), Gaps = 97/391 (24%)
Query: 30 TVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKF 89
+ H+ + E L S + L + + D +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGS----TALRPYHDVLSQWQRHYNADRNRW-----HSAWRQ 52
Query: 90 KNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQL 149
N + + + LE + L
Sbjct: 53 ANSNNPQI----ETRTGRALKATADLLEDA-TQPGRVALE-------------------L 88
Query: 150 TSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLETLLLAN 205
S+ L FP + L + L H+ + P+ + + LETL LA
Sbjct: 89 RSVPLP------QFPDQAF---RLSH--LQHMTIDAAGLMELPDTM-QQFAGLETLTLAR 136
Query: 206 NSL------FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIG--------TYLPGLMDLN 251
N L S +L L + +P + L L L
Sbjct: 137 NPLRALPASIASL-------NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189
Query: 252 LSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIF 311
L S+P+S A+++ L+ L I + L+ + +
Sbjct: 190 LEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH--------------------- 226
Query: 312 SKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDI 371
+L L L L G L L L D +P + L+ LE +
Sbjct: 227 ----HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 372 RMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402
+ +P QL I+ + +
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 3e-16
Identities = 46/373 (12%), Positives = 89/373 (23%), Gaps = 64/373 (17%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
+ LY + + L + D + A+ + +
Sbjct: 6 HHHHHSSGRENLYFQGSTALRPYHDV-LSQWQRHYNA-----DRNRWHSAWRQANSNNPQ 59
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTF 128
+ K + L+ L + Q P + F LS L+
Sbjct: 60 IETRTGRALKATADLLEDATQPGRVALE-------LRSVPLPQFP---DQAFRLSHLQHM 109
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN-- 186
L + P + L L L+ N
Sbjct: 110 T--------IDAA------GLMEL-----------PDTMQQ---FAG--LETLTLARNPL 139
Query: 187 --FPNWLVENNTNLETLLLANNSLFGSF---------RMPIHSYQKLAILDVSKNFFQGH 235
P + + L L + L L + +
Sbjct: 140 RALPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S 197
Query: 236 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL 295
+P I L L L + + + ++ + + LE LD+ P G
Sbjct: 198 LPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAP 254
Query: 296 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355
L+ L L + + + LT L +L L G + ++ + + + +
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
Query: 356 GRIPRWLGNLSAL 368
A
Sbjct: 315 QLDQHRPVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 48/378 (12%), Positives = 87/378 (23%), Gaps = 106/378 (28%)
Query: 2 IDGSKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSI 61
+ + + + + T E L L L Q
Sbjct: 43 RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL--PQFPDQA 100
Query: 62 ASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFN 121
+ L+++++ + L ++F LE L L+ N +P S+ L
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLT-------LARNPLRALPASIASLNR 151
Query: 122 LSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHL 181
L +L +
Sbjct: 152 LREL---------------------------------------------------SIRAC 160
Query: 182 NLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIG 241
P L + + E L N L L + + +P I
Sbjct: 161 PELTELPEPLASTDASGEHQGLVN----------------LQSLRLEWTGIR-SLPASIA 203
Query: 242 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301
L L L + + + ++ + + LE LD+ P
Sbjct: 204 -NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP---------IF--- 249
Query: 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRW 361
L RL L + + + L L L R+P
Sbjct: 250 -------------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 362 LGNLSALEDIRMSNNNLE 379
+ L A I + +
Sbjct: 297 IAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS-Y 624
L ++ + + + L+ + I +L ++ L+L P F ++ L L
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQ 661
+ L +P + L L + ++P +AQ
Sbjct: 264 SNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 566 LTSMSGIDLS-CNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L + +DL C L P G + L L + T+P L Q+E LDL
Sbjct: 228 LPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDR 658
+ ++PS + L + V +L ++
Sbjct: 287 CVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 566 LTSMSGIDLS-CNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ + L C+ L +P I LT++ L+L +P+ + L + +
Sbjct: 252 RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310
Query: 625 NLLHGKIPSQLTVL 638
+L +
Sbjct: 311 HLQAQLDQHRPVAR 324
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-30
Identities = 84/547 (15%), Positives = 170/547 (31%), Gaps = 127/547 (23%)
Query: 101 QLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDG 160
+ + +++ ++P+ N+ + + + ++ L
Sbjct: 15 EPLRHSSNLTEMPVE---AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR----- 66
Query: 161 GTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQ 220
D + L L+ + L E +LE+L+ + NSL S +
Sbjct: 67 -----------DCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSL-TELPELPQSLK 114
Query: 221 KLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQ 280
L + + + + P L L +S N +P + L+ +D+ N
Sbjct: 115 SLLVDNNNLK--------ALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNS 164
Query: 281 LTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT---GEIS-- 335
L ++P+ + LE +A NN L+ + NL L + D N+
Sbjct: 165 LK-KLPDLPPS----LEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSL 217
Query: 336 -------------DSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPI 382
L N L +Y +N L +P +L AL + +N L +
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-L 272
Query: 383 PIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTL 442
P L +L + + + + P+ + ++ S N ++ S+ P L L
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPN------LYYLNASSN----EIRSLCDLPPSLEEL 322
Query: 443 DLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIP 502
++S N+ +P P+L L+ N++ E+P LK+ + + +N L P
Sbjct: 323 NVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFP 373
Query: 503 ACLVY-TSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYY 561
L + H P
Sbjct: 374 DIPESVEDLRMNSHLAEVPELP-------------------------------------- 395
Query: 562 QGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLD 621
++ + + N L E P + L ++ + ++E
Sbjct: 396 -----QNLKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDV 446
Query: 622 LSYNLLH 628
++ H
Sbjct: 447 FEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-28
Identities = 86/467 (18%), Positives = 160/467 (34%), Gaps = 85/467 (18%)
Query: 194 NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS 253
+NT L+ L +++L + + + + + ++ + P G + L
Sbjct: 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLR 66
Query: 254 RNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSK 313
L+++ L+ +PE LE L S N+L +
Sbjct: 67 DCLDRQ-----------AHELELNNLGLS-SLPELPPH----LESLVASCNSLT-ELPEL 109
Query: 314 KFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
+L +L+ + + LL L +S+N L ++P L N S L+ I +
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV 160
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESII 433
NN+L+ +P L + NN + LP + F+ ++ N L+ +
Sbjct: 161 DNNSLKK-LPDLPPSL---EFIAAGNNQL-EELPELQNLPFLTAIYADNN----SLKKLP 211
Query: 434 HDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLS 493
L ++ N + LP L+++ NN ++ +P L+ + + D
Sbjct: 212 DLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNY 268
Query: 494 HNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFT 553
+L + T + G LP
Sbjct: 269 LTDLPELPQSL----------------TFLDVSENIFSGLSELPPN------------LY 300
Query: 554 TKNMSYYYQGRI---LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTT 610
N S + S+ +++S NKL E+P L R L S N+L +P
Sbjct: 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPEL 355
Query: 611 FSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
NLK L + YN L + P + L + N+ ++P+
Sbjct: 356 PQNLK---QLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPE 393
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-27
Identities = 73/513 (14%), Positives = 140/513 (27%), Gaps = 89/513 (17%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKY 69
S L+ +N T + E N + E S+ +
Sbjct: 6 RNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEW-ERNAPPGNGEQREMAV 62
Query: 70 LSMQDSVFKGA----LHGQDFRKF----KNLEHLDMGWVQLILSNNHFFQIPISLEPLFN 121
++D + + A L+ +LE L S N ++P + L +
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLV-------ASCNSLTELPELPQSLKS 115
Query: 122 LSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHL 181
L + L + +S P+ + L +
Sbjct: 116 LLVDNNNLKALSDLPPL----------LEYLGVS-NNQLEKLPEL----QNSSF--LKII 158
Query: 182 NLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIG 241
++ N L + +LE + NN L + + L + N + +P
Sbjct: 159 DVDNNSLKKLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPL 215
Query: 242 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301
+ L + N ++ L + N L +P+ + LE L +
Sbjct: 216 S----LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEALNV 264
Query: 302 SNNNLQG-----------HIFSKKFN-----LTNLMRLQLDGNNFTGEISDSLSNCRLLA 345
+N L + F+ NL L N + D + L
Sbjct: 265 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPS---LE 320
Query: 346 GLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGT 405
L +S+N L +P L L S N+L +P L L + N +
Sbjct: 321 ELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPELPQNL---KQLHVEYNPL-RE 371
Query: 406 LPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSS 465
P + ++ L + L L + N P+ +
Sbjct: 372 FPDIPE-------SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE---SVED 420
Query: 466 LLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
L + + + ++ H++
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 8e-20
Identities = 78/442 (17%), Positives = 143/442 (32%), Gaps = 96/442 (21%)
Query: 9 QSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
+ SL SL + + LE L + + L + L + + + LK
Sbjct: 108 ELPQSLKSLLVDNNNLKALSD--------LPPLLEYLGVSNNQL---EKLPELQNSSFLK 156
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTF 128
+ + ++ K +LE + NN ++P L NL L
Sbjct: 157 IIDVDNNSLKKL-----PDLPPSLEFIA-------AGNNQLEELP----ELQNLPFLTAI 200
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFP 188
+ N L + P L++ + L P
Sbjct: 201 Y--------ADNN------SLKKL-----------PDLPLS---LESIVAGNNILE-ELP 231
Query: 189 NWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM 248
++N L T+ NN L +P L L+V N+ +P + L
Sbjct: 232 E--LQNLPFLTTIYADNNLLKTLPDLP----PSLEALNVRDNYLT-DLPELPQS----LT 280
Query: 249 DLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG 308
L++S N F+ + L L+ S N++ + + + LE L +SNN L
Sbjct: 281 FLDVSENIFS-GLSELP---PNLYYLNASSNEIR-SLCDLPPS----LEELNVSNNKLI- 330
Query: 309 HIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSAL 368
+ + L RL N+ E+ + N + L++ N L P ++ L
Sbjct: 331 ELPA---LPPRLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDL 382
Query: 369 EDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQ 428
N++L +P L L + N + P P +E + ++ ++
Sbjct: 383 R----MNSHLA-EVPELPQN---LKQLHVETNPL-REFPD--IPESVEDLRMNSERVVDP 431
Query: 429 LESIIHDSPYLVTLDLSYNRFH 450
E + L ++ H
Sbjct: 432 YEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 9e-19
Identities = 76/409 (18%), Positives = 137/409 (33%), Gaps = 93/409 (22%)
Query: 8 LQSIGSLP-SLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTS 66
L+++ LP L+ L +S EL N + L+ + D+ + L S
Sbjct: 123 LKALSDLPPLLEYLGVSNNQLE---KLPELQNSSFLKII-----DVDNNSLKKLPDLPPS 174
Query: 67 LKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGW-------------VQLILSNNHFFQIP 113
L++++ ++ + + + L + ++ NN ++P
Sbjct: 175 LEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP 231
Query: 114 ISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDL 173
L NL L T + N L ++ P
Sbjct: 232 ----ELQNLPFLTTIY--------ADNN------LLKTL-----------PDLPPS---- 258
Query: 174 KNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQ 233
L LN+ N+ L E +L L ++ N G +P L L+ S N +
Sbjct: 259 ----LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP----PNLYYLNASSNEIR 310
Query: 234 GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGC 293
+ P L +LN+S N +P+ LERL S+N L E+PE
Sbjct: 311 -----SLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPELPQN-- 358
Query: 294 FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353
L+ L + N L+ ++ +L N+ E+ + N + L ++ N
Sbjct: 359 --LKQLHVEYNPLR-EFPDIPESVEDL-----RMNSHLAEVPELPQNLKQL---HVETNP 407
Query: 354 LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402
L P ++ L RM++ + P D L ++
Sbjct: 408 LR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 8e-17
Identities = 66/358 (18%), Positives = 117/358 (32%), Gaps = 84/358 (23%)
Query: 315 FNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374
+ T L +N T E+ N + Y + + P G + R+
Sbjct: 8 VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 375 NNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE------GQ 428
+ L+L+N + +LP P +E + S N +
Sbjct: 67 DCLDRQ-----------AHELELNNLGL-SSLPE--LPPHLESLVASCNSLTELPELPQS 112
Query: 429 LESIIHDS----------PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478
L+S++ D+ P L L +S N+ +P + L + + NN ++ ++P
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLP 169
Query: 479 VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPT 538
L+ I +N L +P L T+I+ D S+ P LP
Sbjct: 170 DLPPSLEF---IAAGNNQLE-ELPELQNLPFL----------TAIYADNNSLKKLPDLPL 215
Query: 539 QSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598
L S I N L ++ L + +
Sbjct: 216 S--------------------------LES---IVAGNNILE--ELPELQNLPFLTTIYA 244
Query: 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIP 656
+N L T+P +L+ +L++ N L +P L L V + ++ LS P
Sbjct: 245 DNNLLK-TLPDLPPSLE---ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 4e-29
Identities = 67/346 (19%), Positives = 107/346 (30%), Gaps = 47/346 (13%)
Query: 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254
N L + + L +P + L + N +P L L +S
Sbjct: 39 NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKK 314
N S+P + L L L L + N L
Sbjct: 91 NQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG--------LCKLWIFGNQLTSLPVL-- 139
Query: 315 FNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374
L L + N + S L L+ +N L+ +P L L +S
Sbjct: 140 --PPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQEL---SVS 189
Query: 375 NNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIH 434
+N L +P +L L NN + +LP+ P+ ++++ +S N +L S+
Sbjct: 190 DNQLAS-LPTLPSEL---YKLWAYNNRL-TSLPA--LPSGLKELIVSGN----RLTSLPV 238
Query: 435 DSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSH 494
L L +S NR S+P L SL + N + +P L L ++L
Sbjct: 239 LPSELKELMVSGNRL-TSLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293
Query: 495 NNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQS 540
N LS + GP AS +
Sbjct: 294 NPLS--ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-25
Identities = 71/357 (19%), Positives = 123/357 (34%), Gaps = 81/357 (22%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330
L++ + LT +P+ + + L + +NNL S L L++ GN
Sbjct: 42 NAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT----SLPALPPELRTLEVSGNQL 93
Query: 331 TGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLD 390
T + L+ HL P L L + N L +P+ L
Sbjct: 94 T-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS-LPVLPPGL- 143
Query: 391 YLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450
L +S+N + +LP+ P+ + ++ N QL S+ L L +S N+
Sbjct: 144 --QELSVSDNQL-ASLPA--LPSELCKLWAYNN----QLTSLPMLPSGLQELSVSDNQLA 194
Query: 451 GSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSL 510
S+P +L L NN + +P LKE + +S N L+ +P + L
Sbjct: 195 -SLPTLP---SELYKLWAYNNRLT-SLPALPSGLKE---LIVSGNRLT-SLPVLP--SEL 243
Query: 511 GEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMS 570
+ + P LP+ L S
Sbjct: 244 ----------KELMVSGNRLTSLPMLPSG--------------------------LLS-- 265
Query: 571 GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627
+ + N+LT +P + +L+ +NL N L+ T L++I S +
Sbjct: 266 -LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPI 317
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-24
Identities = 69/321 (21%), Positives = 119/321 (37%), Gaps = 46/321 (14%)
Query: 178 LSHLNLSGNFPNWL-VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHI 236
+ LN+ + L ++ TL++ +N+L +P +L L+VS N +
Sbjct: 42 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQLT-SL 96
Query: 237 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLL 296
PV L L + L +L I NQLT +P L
Sbjct: 97 PVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPPG----L 143
Query: 297 EILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG 356
+ L++S+N L S + L +L N T + S L L +SDN L+
Sbjct: 144 QELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA- 194
Query: 357 RIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIE 416
+P L L NN L +P L L +S N + +LP P+ ++
Sbjct: 195 SLPTLPSELYKLW---AYNNRLT-SLPALPSGL---KELIVSGNRL-TSLPV--LPSELK 244
Query: 417 QVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGE 476
++ +S N +L S+ L++L + N+ +P + L +++ L N +
Sbjct: 245 ELMVSGN----RLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299
Query: 477 IPVQLCELKEVRLIDLSHNNL 497
L E+ +
Sbjct: 300 TLQALREI---TSAPGYSGPI 317
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 4e-21
Identities = 64/315 (20%), Positives = 102/315 (32%), Gaps = 60/315 (19%)
Query: 90 KNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKF-Q 148
L+ + + +P L +++ L D + S+ +
Sbjct: 40 NGNAVLN-------VGESGLTTLPDCLPA--HITTLVIPDNNL--------TSLPALPPE 82
Query: 149 LTSISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNS 207
L ++ +SG + + P L L++ N L + L L + N
Sbjct: 83 LRTLEVSGNQLT--SLPVLP--------PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ 132
Query: 208 LFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 267
L +P L L VS N +P L L N S+P
Sbjct: 133 LT---SLP-VLPPGLQELSVSDNQLA-SLPALPSE----LCKLWAYNNQLT-SLPMLP-- 180
Query: 268 MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDG 327
L+ L +S NQL +P + L L NN L S + L L + G
Sbjct: 181 -SGLQELSVSDNQLA-SLPTLPSE----LYKLWAYNNRLT----SLPALPSGLKELIVSG 230
Query: 328 NNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC 387
N T + S L L +S N L+ +P L +L + N L +P
Sbjct: 231 NRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLTR-LPESLI 281
Query: 388 QLDYLTILDLSNNAI 402
L T ++L N +
Sbjct: 282 HLSSETTVNLEGNPL 296
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 7e-17
Identities = 59/326 (18%), Positives = 100/326 (30%), Gaps = 58/326 (17%)
Query: 89 FKNLEHLDMGWVQ-------------LILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAE 135
++ L + L +S N +P+ L +L F
Sbjct: 60 PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPP---GLLELSIFS------ 110
Query: 136 TESHYNSVTPKF-QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVEN 194
+ + L + + G + P L L++S N L
Sbjct: 111 --NPLTHLPALPSGLCKLWIFG-NQLTSLPVLPPG--------LQELSVSDNQLASLPAL 159
Query: 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254
+ L L NN L +P L L VS N +P L L
Sbjct: 160 PSELCKLWAYNNQLT---SLP-MLPSGLQELSVSDNQLA-SLPTLPS----ELYKLWAYN 210
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKK 314
N S+P+ L+ L +S N+LT +P + L+ L +S N L S
Sbjct: 211 NRLT-SLPAL---PSGLKELIVSGNRLT-SLPVLPSE----LKELMVSGNRLT----SLP 257
Query: 315 FNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374
+ L+ L + N T + +SL + + L N LS R + L +++
Sbjct: 258 MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGP 316
Query: 375 NNNLEGPIPIEFCQLDYLTILDLSNN 400
+ + L ++
Sbjct: 317 IIRFD-MAGASAPRETRALHLAAADW 341
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 2e-16
Identities = 58/279 (20%), Positives = 96/279 (34%), Gaps = 68/279 (24%)
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESII 433
S + C + +L++ + + TLP C PA I + + N L S+
Sbjct: 24 SRGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCL-PAHITTLVIPDN----NLTSLP 77
Query: 434 HDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLS 493
P L TL++S N+ S+P L +LS ++ +P LC+L +
Sbjct: 78 ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKL------WIF 129
Query: 494 HNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFT 553
N L+ +P L + + P LP++
Sbjct: 130 GNQLT-SLPVLP--PGL----------QELSVSDNQLASLPALPSE-------------- 162
Query: 554 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSN 613
L + N+LT +P L L++S N L ++PT S
Sbjct: 163 ------------LCK---LWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSE 202
Query: 614 LKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
L L N L +P+ + L L V+ N L+
Sbjct: 203 L---YKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLT 234
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 7e-13
Identities = 58/385 (15%), Positives = 106/385 (27%), Gaps = 81/385 (21%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
P L+TL +S T + L ++ L + + L
Sbjct: 79 LPPELRTLEVSGNQL--TSLPVLPPGLLELSIF-----SNPLTHLPALPSGLCKLWIFGN 131
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLS----KLKTF 128
Q + L+ L +S+N +P L L +L +
Sbjct: 132 QLTSLPVLP--------PGLQELS-------VSDNQLASLPALPSELCKLWAYNNQLTSL 176
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGNF 187
L +S+S + + P ++L L N
Sbjct: 177 PMLP--------------SGLQELSVSDNQL--ASLPTLP--------SELYKLWAYNNR 212
Query: 188 PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL 247
L + L+ L+++ N L +P +L L VS N +P+ GL
Sbjct: 213 LTSLPALPSGLKELIVSGNRL---TSLP-VLPSELKELMVSGNRLT-SLPMLPS----GL 263
Query: 248 MDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILA---LSNN 304
+ L++ RN +P S + +++ N L+ E + + + +
Sbjct: 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFD 321
Query: 305 NLQGHIFSKKFNLTNLMRLQLDGNNFTG----EISDSLSNCRLLAGLYLSDNHLSG---- 356
+ L L + L + LS
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENF 381
Query: 357 --------RIPRWLGNLSALEDIRM 373
+I WL L+ E +R
Sbjct: 382 IKDAGFKAQISSWLAQLAEDEALRA 406
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 10/140 (7%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
+ + + +S N+LT +P L L +S N LT ++P S L SL + N
Sbjct: 220 PSGLKELIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGL---LSLSVYRN 271
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSC 685
L ++P L L++ + N LS + + + T S
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPR 329
Query: 686 DDNGLTTVTTEADTKNEEGD 705
+ L + EG+
Sbjct: 330 ETRALHLAAADWLVPAREGE 349
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 573 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632
++S N+LT +P L + + +L + + L + N L +P
Sbjct: 87 EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLP 137
Query: 633 SQLTVLNTLAVFKVAYNNLSGKIPDRVAQ 661
L L V+ N L+ +P ++
Sbjct: 138 VLPPGLQEL---SVSDNQLA-SLPALPSE 162
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 7e-27
Identities = 79/455 (17%), Positives = 156/455 (34%), Gaps = 91/455 (20%)
Query: 32 VNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKN 91
++ L ++ +D V I + + K ++ ++S + L F+
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76
Query: 92 LEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTS 151
+E L+ L++ +I ++ +N++
Sbjct: 77 VELLN-------LNDLQIEEIDTYA--FAYAHTIQKLY--------MGFNAIR------- 112
Query: 152 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLETLLLANNS 207
Y+ F ++ L+ L L N P + N L TL ++NN+
Sbjct: 113 -----YLPPHVF-------QNVPL--LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158
Query: 208 LFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 267
L I + L +L LS N + +
Sbjct: 159 L-------------------------ERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSL 190
Query: 268 MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDG 327
+ L ++SYN L+ + +A +E L S+N++ + L L+L
Sbjct: 191 IPSLFHANVSYNLLS-TLAIPIA-----VEELDASHNSIN-VVRGPVN--VELTILKLQH 241
Query: 328 NNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC 387
NN T + L N L + LS N L + + LE + +SNN L + +
Sbjct: 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ 298
Query: 388 QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS-PYLVTLDLSY 446
+ L +LDLS+N + + +E ++L N + ++ + L L LS+
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSH 354
Query: 447 NRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481
N + + + + ++ + + +I QL
Sbjct: 355 NDWDCN--SLRALFRNVARPAVDDADQHCKIDYQL 387
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 8e-23
Identities = 71/369 (19%), Positives = 125/369 (33%), Gaps = 61/369 (16%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSI-ASFTSLKYLS 71
+L + K + + + L +F +E L L +DL + ++ + A +++ L
Sbjct: 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLY 105
Query: 72 MQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGE 131
M + + L F+ L L L N +P + N KL T
Sbjct: 106 MGFNAIR-YLPPHVFQNVPLLTVLV-------LERNDLSSLPRGI--FHNTPKLTTLS-- 153
Query: 132 IWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWL 191
N L I+ TF + L +L LS N +
Sbjct: 154 ------MSNN------NLER------IEDDTF-------QATTS--LQNLQLSSNRLTHV 186
Query: 192 VENN-TNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDL 250
+ +L ++ N L + + LD S N + + L L
Sbjct: 187 DLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTIL 237
Query: 251 NLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310
L N + + + L +D+SYN+L +I LE L +SNN L +
Sbjct: 238 KLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-AL 293
Query: 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALED 370
+ L L L N+ + + L LYL N + + L L++
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKN 349
Query: 371 IRMSNNNLE 379
+ +S+N+ +
Sbjct: 350 LTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 8e-18
Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 27/235 (11%)
Query: 276 ISYNQLT-----GEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330
YN I + C + + + + + L N + +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYD-VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 331 TGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLD 390
+ L + R + L L+D + ++ + M N + P F +
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123
Query: 391 YLTILDLSNNAI-------FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLD 443
LT+L L N + F P + + +S N +E + + L L
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPK------LTTLSMSNNNLERIEDDTFQATTSLQNLQ 177
Query: 444 LSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
LS NR + ++++P L + N + L V +D SHN+++
Sbjct: 178 LSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 224
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 8e-18
Identities = 78/467 (16%), Positives = 145/467 (31%), Gaps = 90/467 (19%)
Query: 12 GSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLS 71
+++ LY+ + + N L L+L+++DL
Sbjct: 96 AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS------------------ 136
Query: 72 MQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGE 131
+L F L L +SNN+ +I + L+
Sbjct: 137 --------SLPRGIFHNTPKLTTLS-------MSNNNLERIEDDT--FQATTSLQNLQL- 178
Query: 132 IWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWL 191
N +LT + L P L H N+S N + L
Sbjct: 179 -------SSN------RLTHVDL------SLIPS------------LFHANVSYNLLSTL 207
Query: 192 VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251
+E L ++NS+ + +L IL + N + PGL++++
Sbjct: 208 -AIPIAVEELDASHNSI---NVVRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVD 260
Query: 252 LSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIF 311
LS N + F M+ LERL IS N+L + L++L LS+N+L H+
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL-YGQPIPTLKVLDLSHNHLL-HVE 317
Query: 312 SKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG----RIPRWLGNLSA 367
+ L L LD N+ + L L LS N + R + +
Sbjct: 318 RNQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAV 374
Query: 368 LEDIRMSNNNLEGPIPIEFCQLDY----LTILDLSNNAIFGTLPSCFSPAF-IEQVHLSK 422
+ + + + + + D + ++ ++ + + ++ +
Sbjct: 375 DDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQ 434
Query: 423 NKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLG 469
+ + L+ N + N Q LL G
Sbjct: 435 SLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQG 481
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 3e-11
Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 22/189 (11%)
Query: 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG-----NLSALEDIRMSNNNL 378
Q N + + L D H+ + L+ + + N+ +
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 379 EGPIPIEFCQLDYLTILDLSNNAI-------FGTLPSCFSPAFIEQVHLSKNKIEGQLES 431
+ +L+L++ I F + I+++++ N I
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT------IQKLYMGFNAIRYLPPH 117
Query: 432 IIHDSPYLVTLDLSYNRFHGSIPNWI-NILPQLSSLLLGNNYIEGEIPVQ-LCELKEVRL 489
+ + P L L L N S+P I + P+L++L + NN +E I ++
Sbjct: 118 VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN 175
Query: 490 IDLSHNNLS 498
+ LS N L+
Sbjct: 176 LQLSSNRLT 184
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 6e-09
Identities = 71/492 (14%), Positives = 136/492 (27%), Gaps = 116/492 (23%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
+ SL+ L LS T + +L +L + LLS++A +++ L
Sbjct: 169 ATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVS------YNLLSTLAIPIAVEELDA 218
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
+ +++ L L L +N+ L L ++
Sbjct: 219 SHN----SINVVRGPVNVELTILK-------LQHNNLTDTA-WLLNYPGLVEV------- 259
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLV 192
DLS+ L
Sbjct: 260 --------------------------------------------DLSYNELE-KIMYHPF 274
Query: 193 ENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNL 252
LE L ++NN L + + +P L L+L
Sbjct: 275 VKMQRLERLYISNNRL-------------------------VALNLYGQP-IPTLKVLDL 308
Query: 253 SRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFS 312
S N + + LE L + +N + + L+ L LS+N+ S
Sbjct: 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHT---LKNLTLSHNDWDC--NS 361
Query: 313 KKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIR 372
+ N+ R +D + +I L + SD R+ +++ S +E ++
Sbjct: 362 LRALFRNVARPAVDDADQHCKIDYQLEHGLCCKE---SDKPYLDRLLQYIALTSVVEKVQ 418
Query: 373 MSNNNLEG--PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE--GQ 428
+ I Y+T L + + E L+ +I+
Sbjct: 419 RAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQL 478
Query: 429 LESIIHDSPY-LVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL-CELKE 486
L+ + + L L + S N + L + + KE
Sbjct: 479 LQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKE 538
Query: 487 VRLIDLSHNNLS 498
++ + L
Sbjct: 539 TEDLEQENIALE 550
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 54/409 (13%), Positives = 120/409 (29%), Gaps = 52/409 (12%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
L ++ +++ L S+ + L L L ++L + + ++ L
Sbjct: 204 LSTLAIPIAVEELDASHNSIN----VVRGPVNVELTILKLQHNNL---TDTAWLLNYPGL 256
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
+ + + + + F K + LE L +SNN + + +P+ L L
Sbjct: 257 VEVDLSYNELE-KIMYHPFVKMQRLERLY-------ISNNRLVALNLYGQPIPTLKVLDL 308
Query: 128 FDGEIWAETESHYNSVTPKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNL 183
+ + +L ++ L + T LKN LSH +
Sbjct: 309 SHNHL----LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT-------LKNLTLSHNDW 357
Query: 184 SGN-----FPNW----LVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQG 234
N F N + + + + + + L + + L + ++
Sbjct: 358 DCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV--- 414
Query: 235 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF 294
+N ++ + ++ E+L+ N+L E+ +
Sbjct: 415 EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ------- 467
Query: 295 LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354
L LQG NL + + ++ ++ + L +
Sbjct: 468 LTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQA 527
Query: 355 SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC-QLDYLTILDLSNNAI 402
R ED+ N LE + + Q + L +
Sbjct: 528 --RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ ++ + L N LT + + + ++LS+N L + F ++++E L +S
Sbjct: 230 VNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEE 667
N L + + TL V +++N+L + QF E
Sbjct: 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ ++ + L N L+ +P I ++ L++S+NNL TF +++L LS
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
N L S + L V+YN LS
Sbjct: 181 NRLTHVDLSLIPSLFHA---NVSYNLLS 205
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ ++L+ ++ EI T Y I L + N + P F N+ + L L
Sbjct: 74 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV 659
N L L ++ NNL +I D
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 59/286 (20%), Positives = 108/286 (37%), Gaps = 46/286 (16%)
Query: 224 ILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTG 283
+LD+ N I L L L L N + P +FA + LERL +S NQL
Sbjct: 56 LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 284 EIPERMATGCFLLEILALSNNN---LQGHIFSKKFNLTNLMRLQLDGNNFTGEI--SDSL 338
E+PE+M L+ L + N ++ +F+ L ++ ++L N + +
Sbjct: 114 ELPEKMPKT---LQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSSGIENGAF 167
Query: 339 SNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLS 398
+ L+ + ++D +++ IP+ G +L ++ + N + L+ L L LS
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN 458
N+I S + ++P+L L L+ N+ +P +
Sbjct: 225 FNSI-----SAVDN------------------GSLANTPHLRELHLNNNKLV-KVPGGLA 260
Query: 459 ILPQLSSLLLGNNYIEG------EIPVQLCELKEVRLIDLSHNNLS 498
+ + L NN I P + + L N +
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 6e-25
Identities = 68/294 (23%), Positives = 108/294 (36%), Gaps = 36/294 (12%)
Query: 176 ADLSHLNLSGNFPNWLVENN----TNLETLLLANNSL----FGSFRMPIHSYQKLAILDV 227
D + L+L N + + + NL TL+L NN + G+F KL L +
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF----APLVKLERLYL 107
Query: 228 SKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLT-GEIP 286
SKN + +P ++ L +L + N S F + + +++ N L I
Sbjct: 108 SKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
Query: 287 ERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAG 346
G L + +++ N+ I +L L LDGN T + SL LA
Sbjct: 164 NGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI---- 402
L LS N +S L N L ++ ++NN L +P Y+ ++ L NN I
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIG 279
Query: 403 ---FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS-----PYLVTLDLSYNR 448
F A V L N ++ I S + L +
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQ---YWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 5e-18
Identities = 58/335 (17%), Positives = 101/335 (30%), Gaps = 78/335 (23%)
Query: 15 PSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSI-----ASFTSLKY 69
P L L T + + + N NL LIL + +S I A L+
Sbjct: 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN------KISKISPGAFAPLVKLER 104
Query: 70 LSMQD---SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPI-SLEPLFNLSKL 125
L + + K L+ L + N ++ L + +
Sbjct: 105 LYLSKNQLKELPEKM-------PKTLQELR-------VHENEITKVRKSVFNGLNQMIVV 150
Query: 126 KTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG 185
E N + S I+ G F +K LS++ ++
Sbjct: 151 -----------ELGTNPLK----------SSGIENGAF-------QGMKK--LSYIRIAD 180
Query: 186 NFPNWLVENN-TNLETLLLANNSL----FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEI 240
+ + +L L L N + S LA L +S N +
Sbjct: 181 TNITTIPQGLPPSLTELHLDGNKITKVDAASL----KGLNNLAKLGLSFNSIS-AVDNGS 235
Query: 241 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLT-----GEIPERMATGCFL 295
P L +L+L+ N +P AD K ++ + + N ++ P T
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294
Query: 296 LEILALSNNNLQGH-IFSKKF-NLTNLMRLQLDGN 328
++L +N +Q I F + +QL
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ + +DL NK+T L +H L L +N ++ P F+ L ++E L LS
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV 659
N L ++P ++ TL +V N ++ K+ V
Sbjct: 110 NQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSV 140
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 573 DLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 631
L NK+T ++ L + L LS N+++ + +N + L L+ N L K+
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255
Query: 632 PSQLTVLNTLAVFKVAYNNLS 652
P L + V + NN+S
Sbjct: 256 PGGLADHKYIQVVYLHNNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
+ +S I ++ +T IP G + L+L N +T + L + L LS+N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
+ L L + N L K+P
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L + + LS N+L E+P + L + N +T + F+ L Q+ ++L N
Sbjct: 99 LVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Query: 626 LLH-GKIPSQ-LTVLNTLAVFKVAYNNLSGKIPD 657
L I + + L+ ++A N++ IP
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG------TIPTTFSNLKQIES 619
+ + L+ NKL ++P + I + L +NN++ P +
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297
Query: 620 LDLSYN-LLHGKIP----SQLTVLNTL 641
+ L N + + +I + V +
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAV 324
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 35/199 (17%), Positives = 67/199 (33%), Gaps = 45/199 (22%)
Query: 14 LPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQ 73
+ L + ++ TN T + Q L +L EL LD + + +S+ +L L +
Sbjct: 170 MKKLSYIRIADTNI--TTIPQGL--PPSLTELHLDGNKITKVD-AASLKGLNNLAKLGLS 224
Query: 74 DSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIW 133
+ A+ +L L L+NN ++P L + ++
Sbjct: 225 FNSIS-AVDNGSLANTPHLRELH-------LNNNKLVKVP---GGLADHKYIQVVY---- 269
Query: 134 AETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNF-PNWLV 192
H N +++I + + G K A S ++L N W +
Sbjct: 270 ----LHNN------NISAIGSNDFCPPGYNTKK---------ASYSGVSLFSNPVQYWEI 310
Query: 193 ENNT-----NLETLLLANN 206
+ +T + L N
Sbjct: 311 QPSTFRCVYVRAAVQLGNY 329
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 7e-25
Identities = 73/493 (14%), Positives = 159/493 (32%), Gaps = 49/493 (9%)
Query: 5 SKVLQSI--GSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKS------------ 50
L + L +S + + ++ + + L LI+ +
Sbjct: 9 KNGLIHVPKDLSQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67
Query: 51 -------DLHVSQLLS-SIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQL 102
DL ++L+ S +LK+L + + F ++F L+ L
Sbjct: 68 NQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG------ 121
Query: 103 ILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGT 162
LS H + + P+ +L+ K E F S+ + +
Sbjct: 122 -LSTTHLEKSS--VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK-- 176
Query: 163 FPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKL 222
F+ A+L N+ + ++ L N L + +
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS-NLTLNNIETTWN 235
Query: 223 AILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLT 282
+ + + + + + Y + ++ L S +K L + +
Sbjct: 236 SFIRILQLVWHTTV-----WYFS-ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289
Query: 283 GEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCR 342
+ + I + + + ++ + L N T + ++ +
Sbjct: 290 -FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT 348
Query: 343 LLAGLYLSDNHLS--GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC-QLDYLTILDLSN 399
L L L N L +I + +L+ + +S N++ C L L++S+
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 400 NAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPN-WIN 458
N + T+ C P I+ + L NKI+ + + L L+++ N+ S+P+ +
Sbjct: 409 NILTDTIFRCLPPR-IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465
Query: 459 ILPQLSSLLLGNN 471
L L + L N
Sbjct: 466 RLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 1e-19
Identities = 72/435 (16%), Positives = 138/435 (31%), Gaps = 68/435 (15%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGH 309
LN+S+N + S + L L IS+N++ + + LE L LS+N L
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKI 84
Query: 310 IFSKKFNLTNLMRLQLDGNNFT----GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNL 365
NL L L N F + ++S L L LS HL + +L
Sbjct: 85 SCHP---TVNLKHLDLSFNAFDALPICKEFGNMSQ---LKFLGLSTTHLEKSSVLPIAHL 138
Query: 366 SALEDIRMSNNNLEGPIPIEF---CQLDYLTILDLSNNAIFGTLPSCF-SPAFIEQVHLS 421
+ + + + E + L I+ +N L + A +E ++
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 422 KNKIEGQLESIIHDSPYLV----TLDLSYNRFHGSIPNWINILP----------QLSSLL 467
+ + + L +L+ N + ++I IL +S++
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258
Query: 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDR 527
L + LK + + + + P +Y + +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK-----NFTVSG 311
Query: 528 ASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI 587
+ C ++ +D S N LT +
Sbjct: 312 TRMVHMLCP---------------------------SKISPFLHLDFSNNLLTDTVFENC 344
Query: 588 GYLTRIHALNLSHNNLTGTIPTT---FSNLKQIESLDLSYN-LLHGKIPSQLTVLNTLAV 643
G+LT + L L N L + + +K ++ LD+S N + + + + +L
Sbjct: 345 GHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403
Query: 644 FKVAYNNLSGKIPDR 658
++ N L+ I
Sbjct: 404 LNMSSNILTDTIFRC 418
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 4e-18
Identities = 82/481 (17%), Positives = 150/481 (31%), Gaps = 74/481 (15%)
Query: 177 DLSHLNLSGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFF 232
L L +S N + + N LE L L++N L + H L LD+S N F
Sbjct: 46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAF 102
Query: 233 QGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATG 292
+ + L L LS S A + + + L + +
Sbjct: 103 DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162
Query: 293 CFL--LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNC------RLL 344
L I+ +N + + NL + + S LS L
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222
Query: 345 AGLYLSDNHLSGRIPRWLGNL---SALEDIRMSNNNLEGPIPIE-----FCQLDYLTILD 396
+ L L++ + + L + + +SN L+G + L L+I
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282
Query: 397 LSNNAIFGTLPSCFSPAFIEQ--VHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP 454
+ ++ +FG S F + + + + LD S N ++
Sbjct: 283 VVSD-VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 455 NWINILPQLSSLLLGNNYIE--GEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGE 512
L +L +L+L N ++ +I ++K ++ +D+S N++
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV--------------- 386
Query: 513 DYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSY-----YYQGRILT 567
+ T + NMS +
Sbjct: 387 -------------------------SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421
Query: 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627
+ +DL NK+ IP Q+ L + LN++ N L F L ++ + L N
Sbjct: 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 628 H 628
Sbjct: 481 D 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 72/436 (16%), Positives = 129/436 (29%), Gaps = 63/436 (14%)
Query: 81 LHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPIS-LEPLFNLSKLKTFDGEIWAETESH 139
L D L L +S+N + IS + L L +
Sbjct: 36 LWTSDILSLSKLRILI-------ISHNRIQYLDISVFKFNQELEYL-----------DLS 77
Query: 140 YNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENN---- 195
+N +L IS H N L HL+LS N + L
Sbjct: 78 HN------KLVKISC----------------HPTVN--LKHLDLSFNAFDALPICKEFGN 113
Query: 196 -TNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254
+ L+ L L+ L + + L I V + + E L +L
Sbjct: 114 MSQLKFLGLSTTHL---EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKK 314
D+ + ++ + + + + + + +N L +
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230
Query: 315 FNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374
N L T S+SN +L L D SG +L AL ++
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT------SLKALSIHQVV 284
Query: 375 NNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESII 433
++ P + + I + + + C S + + S N + +
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC 344
Query: 434 HDSPYLVTLDLSYNRFHGSIPNWINI---LPQLSSLLLGNNYIEGEIPVQLCE-LKEVRL 489
L TL L N+ + + + L L + N + + C K +
Sbjct: 345 GHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403
Query: 490 IDLSHNNLSGYIPACL 505
+++S N L+ I CL
Sbjct: 404 LNMSSNILTDTIFRCL 419
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 64/394 (16%), Positives = 119/394 (30%), Gaps = 33/394 (8%)
Query: 274 LDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTG 332
+D S N L +P+ ++ IL +S N + +++ +L+ L L + N
Sbjct: 5 VDRSKNGLI-HVPKDLSQK---TTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQY 59
Query: 333 EISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEG-PIPIEFCQLDY 391
+ L L LS N L NL L +S N + PI EF +
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHL---DLSFNAFDALPICKEFGNMSQ 116
Query: 392 LTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHG 451
L L LS + + + HL+ +K+ ++ Y D +
Sbjct: 117 LKFLGLSTTHLE-------KSSVLPIAHLNISKVL-----LVLGETYGEKEDPEGLQDFN 164
Query: 452 SIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYI-PACLVYTSL 510
+ I + + ++ ++L +K V + LS S
Sbjct: 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224
Query: 511 GEDYHEEGPPTSIWCDRASVYGSP--CLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTS 568
+ E S V+ + + G+ + F S L +
Sbjct: 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS-------LKA 277
Query: 569 MSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628
+S + + + ++ N + + S + LD S NLL
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337
Query: 629 GKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQF 662
+ L L + N L ++
Sbjct: 338 DTVFENCGHLTELETLILQMNQLK-ELSKIAEMT 370
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 8e-25
Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 11/232 (4%)
Query: 245 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNN 304
LNL N +SF ++ LE L +S N + I G L L L +N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122
Query: 305 NLQG---HIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD-NHLSGRIPR 360
L F L+ L L L N S + + L L L + LS
Sbjct: 123 RLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179
Query: 361 WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVH 419
LS L + ++ NL IP L L LDLS N + P F ++++
Sbjct: 180 AFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 420 LSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNN 471
+ +++I+ + + LV ++L++N + L L + L +N
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 7e-23
Identities = 60/238 (25%), Positives = 98/238 (41%), Gaps = 20/238 (8%)
Query: 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQL 281
+L++ +N Q I V +L L L LSRN +F + L L++ N+L
Sbjct: 66 TRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 282 TGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEIS-DSLS 339
T IP L+ L L NN ++ I S F + +L RL L IS +
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 340 NCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSN 399
L L L+ +L IP L L L+++ +S N+L P F L +L L +
Sbjct: 183 GLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240
Query: 400 NAI-------FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450
+ I F L S + +++L+ N + + +L + L +N ++
Sbjct: 241 SQIQVIERNAFDNLQS------LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-16
Identities = 61/283 (21%), Positives = 97/283 (34%), Gaps = 42/283 (14%)
Query: 148 QLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLE 199
++L I +F L++ L L LS N NL
Sbjct: 65 NTRLLNLHENQIQIIKVNSF-------KHLRH--LEILQLSRNHIRTIEIGAFNGLANLN 115
Query: 200 TLLLANNSL----FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255
TL L +N L G+F KL L + N + IP +P L L+L
Sbjct: 116 TLELFDNRLTTIPNGAFV----YLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL 170
Query: 256 AFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ---GHIF 311
I +F + L L+++ L EIP T L+ L LS N+L F
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 312 SKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDI 371
L +L +L + + ++ N + L + L+ N+L+ L LE I
Sbjct: 228 Q---GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284
Query: 372 RMSNNNLEGPIPIEFCQLDYL-TILDLSNNAIFGTLPSCFSPA 413
+ +N C + +L + + C +P
Sbjct: 285 HLHHNPWNCN-----CDILWLSWWIKDMAPSNTACCARCNTPP 322
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-14
Identities = 66/295 (22%), Positives = 104/295 (35%), Gaps = 74/295 (25%)
Query: 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPI-SLEPLFNL 122
T+ + L++ ++ + + F+ ++LE L LS NH I I + L NL
Sbjct: 63 STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQ-------LSRNHIRTIEIGAFNGLANL 114
Query: 123 SKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLN 182
+ L E N +LT+I G F L L L
Sbjct: 115 NTL-----------ELFDN------RLTTIP------NGAF-------VYLSK--LKELW 142
Query: 183 LSGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPV 238
L N P++ +L L L + +S+ F+G
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELK---------------RLSYISEGAFEG---- 183
Query: 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298
L L LNL+ IP + + L+ LD+S N L+ I G L+
Sbjct: 184 -----LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQK 235
Query: 299 LALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN 352
L + + +Q I F NL +L+ + L NN T D + L ++L N
Sbjct: 236 LWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 7e-14
Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 13/192 (6%)
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
TN L L N +S + R L L LS NH+ L+ L + + +N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 378 LEGPIPIE-FCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHD 435
L IP F L L L L NN I F+ + ++ L + K +L I
Sbjct: 124 LTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK---RLSYISEG 179
Query: 436 S----PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLID 491
+ L L+L+ IPN L +L L L N++ P L ++ +
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 492 LSHNNLSGYIPA 503
+ + + I
Sbjct: 238 MIQSQIQ-VIER 248
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 5e-13
Identities = 58/319 (18%), Positives = 91/319 (28%), Gaps = 94/319 (29%)
Query: 15 PSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQD 74
+ + L L + + +LE L L ++ +
Sbjct: 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR--------------------- 101
Query: 75 SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWA 134
+ F NL L+ L +N IP LSKLK
Sbjct: 102 -----TIEIGAFNGLANLNTLE-------LFDNRLTTIPNGA--FVYLSKLKELW----- 142
Query: 135 ETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVEN 194
N + SI F + L+ DL L E
Sbjct: 143 ---LRNN------PIESIP------SYAF-NRIPS---LRRLDLGELKRLSYISEGAFEG 183
Query: 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254
+NL L LA +L L L +L+LS
Sbjct: 184 LSNLRYLNLAMCNL------------------REIPNLTP---------LIKLDELDLSG 216
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNL---QGHIF 311
N + P SF + L++L + +Q+ I L + L++NNL +F
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275
Query: 312 SKKFNLTNLMRLQLDGNNF 330
+ L +L R+ L N +
Sbjct: 276 T---PLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 32/204 (15%)
Query: 14 LPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSI-ASFTSLKYLSM 72
L +L TL L T T+ N + L+EL L + + + S SL+ L +
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWL--RNNPIESIPSYAFNRIPSLRRLDL 167
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
+ + F NL +L+ L+ + +IP +L PL L +L +
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLN-------LAMCNLREIP-NLTPLIKLDELDLSGNHL 219
Query: 133 WAETESHYNSVTPKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGN-- 186
+ S L + + I+ F +L++ L +NL+ N
Sbjct: 220 ---SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF-------DNLQS--LVEINLAHNNL 267
Query: 187 --FPNWLVENNTNLETLLLANNSL 208
P+ L +LE + L +N
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
I T+ ++L N++ +L + L LS N++ F+ L + +L+L
Sbjct: 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
Query: 625 NLLHGKIPSQ-LTVLNTLAVFKVAYNNLSGKIPDRV 659
N L IP+ L+ L + N + IP
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 19/86 (22%), Positives = 35/86 (40%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L + +DLS N L+ P L + L + + + F NL+ + ++L++N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNL 651
L T L+ L + +N
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLS 623
L+ + + L N + IP+ + + L+L I F L + L+L+
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193
Query: 624 YNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
L +IP+ LT L L ++ N+LS
Sbjct: 194 MCNLR-EIPN-LTPLIKLDELDLSGNHLS 220
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 29/198 (14%), Positives = 54/198 (27%), Gaps = 52/198 (26%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
+PSL+ L L + +NL L L +L + ++ L L +
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---IPNLTPLIKLDELDL 214
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
+ A+ F+ +L+ L + + I NL L +
Sbjct: 215 SGNHLS-AIRPGSFQGLMHLQKLW-------MIQSQIQVIE--RNAFDNLQSLVEIN--- 261
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN------ 186
+N LT + F L + L ++L N
Sbjct: 262 -----LAHN------NLTLLP------HDLF-------TPLHH--LERIHLHHNPWNCNC 295
Query: 187 ----FPNWLVENNTNLET 200
W+ + +
Sbjct: 296 DILWLSWWIKDMAPSNTA 313
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 61/265 (23%), Positives = 99/265 (37%), Gaps = 27/265 (10%)
Query: 197 NLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNA 256
++ L +P L++ +N Q I + +L L L L RN+
Sbjct: 55 QFSKVVCTRRGLS---EVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110
Query: 257 FNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNL---QGHIFSK 313
+F + L L++ N LT IP L L L NN + + F+
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN- 168
Query: 314 KFNLTNLMRLQLDGNNFTGEIS-DSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIR 372
+ +LMRL L IS + L L L ++ +P L L LE++
Sbjct: 169 --RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELE 224
Query: 373 MSNNNLEGPIPIEFCQLDYLTILDLSNNAI-------FGTLPSCFSPAFIEQVHLSKNKI 425
MS N+ P F L L L + N+ + F L S + +++L+ N +
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS------LVELNLAHNNL 278
Query: 426 EGQLESIIHDSPYLVTLDLSYNRFH 450
+ YLV L L +N ++
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 63/236 (26%), Positives = 98/236 (41%), Gaps = 21/236 (8%)
Query: 176 ADLSHLNLSGNF----PNWLVENNTNLETLLLANNSL----FGSFRMPIHSYQKLAILDV 227
++ +LNL N + +LE L L NS+ G+F L L++
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLEL 130
Query: 228 SKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDIS-YNQLTGEI 285
N+ IP YL L +L L N SIPS +F + L RLD+ +L I
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YI 187
Query: 286 PERMATGCFLLEILALSNNNLQG-HIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLL 344
E G F L+ L L N++ + L L L++ GN+F S L
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPGSFHGLSSL 244
Query: 345 AGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNN 400
L++ ++ +S L++L ++ +++NNL F L YL L L +N
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 6e-20
Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 38/259 (14%)
Query: 245 PGLMDLNLSRNAFNGSIPSS-FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
+ +R + +P ++ L++ N + I LE+L L
Sbjct: 54 NQFSKVVCTRRGLS-EVPQGIPSN---TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108
Query: 304 NNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP-RW 361
N+++ I F L +L L+L N T S + L L+L +N + IP
Sbjct: 109 NSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166
Query: 362 LGNLSALEDIRMSNNNLEGPIPIE-FCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHL 420
+ +L + + I F L L L+L I +P+ +P
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPL------- 217
Query: 421 SKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQ 480
L L++S N F P + L L L + N+ + I
Sbjct: 218 ----------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERN 260
Query: 481 -LCELKEVRLIDLSHNNLS 498
L + ++L+HNNLS
Sbjct: 261 AFDGLASLVELNLAHNNLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 4e-17
Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 32/245 (13%)
Query: 148 QLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLE 199
++L I TF L + L L L N +L
Sbjct: 76 NTRYLNLMENNIQMIQADTF-------RHLHH--LEVLQLGRNSIRQIEVGAFNGLASLN 126
Query: 200 TLLLANNSL----FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255
TL L +N L G+F KL L + N + IP +P LM L+L
Sbjct: 127 TLELFDNWLTVIPSGAF----EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL 181
Query: 256 AFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKK 314
I +F + L+ L++ + ++P T LE L +S N+ I
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFP-EIRPGS 237
Query: 315 F-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
F L++L +L + + + ++ L L L+ N+LS L L ++ +
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297
Query: 374 SNNNL 378
+N
Sbjct: 298 HHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 6e-14
Identities = 64/295 (21%), Positives = 99/295 (33%), Gaps = 74/295 (25%)
Query: 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPI-SLEPLFNL 122
++ +YL++ ++ + + FR +LE L L N QI + + L +L
Sbjct: 74 PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQ-------LGRNSIRQIEVGAFNGLASL 125
Query: 123 SKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLN 182
+ L E N LT I G F L L L
Sbjct: 126 NTL-----------ELFDN------WLTVIP------SGAF-------EYLSK--LRELW 153
Query: 183 LSGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPV 238
L N P++ +L L L + +S+ F+G
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELK---------------KLEYISEGAFEG---- 194
Query: 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298
L L LNL +P + + LE L++S N EI G L+
Sbjct: 195 -----LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKK 246
Query: 299 LALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN 352
L + N+ + I F L +L+ L L NN + D + R L L+L N
Sbjct: 247 LWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 59/319 (18%), Positives = 91/319 (28%), Gaps = 94/319 (29%)
Query: 15 PSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQD 74
+ + L L N + + +LE L L ++ + I
Sbjct: 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN------SIRQIEVGA--------- 118
Query: 75 SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWA 134
F +L L+ L +N IP LSKL+
Sbjct: 119 -----------FNGLASLNTLE-------LFDNWLTVIPSGA--FEYLSKLRELW----- 153
Query: 135 ETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVEN 194
N + SI F + L DL L E
Sbjct: 154 ---LRNN------PIESIP------SYAF-NRVPS---LMRLDLGELKKLEYISEGAFEG 194
Query: 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254
NL+ L L ++ L GL +L +S
Sbjct: 195 LFNLKYLNLGMCNI------------------KDMPNLTP---------LVGLEELEMSG 227
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNL---QGHIF 311
N F P SF + L++L + +Q++ I G L L L++NNL +F
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLF 286
Query: 312 SKKFNLTNLMRLQLDGNNF 330
+ L L+ L L N +
Sbjct: 287 T---PLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 32/204 (15%)
Query: 14 LPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSI-ASFTSLKYLSM 72
L SL TL L T + + + L EL L + + + S SL L +
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL--RNNPIESIPSYAFNRVPSLMRLDL 178
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
+ + F NL++L+ L + +P +L PL L +L+
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLN-------LGMCNIKDMP-NLTPLVGLEELEMSGNHF 230
Query: 133 WAETESHYNSVTPKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGN-- 186
++ ++ L + + I+ F L + L LNL+ N
Sbjct: 231 PEIRPGSFHGLS---SLKKLWVMNSQVSLIERNAF-------DGLAS--LVELNLAHNNL 278
Query: 187 --FPNWLVENNTNLETLLLANNSL 208
P+ L L L L +N
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 16/86 (18%), Positives = 33/86 (38%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L + +++S N P L+ + L + ++ ++ F L + L+L++N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNL 651
L T L L + +N
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
I ++ ++L N + +L + L L N++ F+ L + +L+L
Sbjct: 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132
Query: 625 NLLHGKIPSQ-LTVLNTLAVFKVAYNNLSGKIPDRV 659
N L IPS L+ L + N + IP
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 566 LTSMSGIDLS-CNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623
+ S+ +DL KL I L + LNL N+ +P + L +E L++S
Sbjct: 170 VPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMS 226
Query: 624 YNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
N P L++L V + +S
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 33/198 (16%), Positives = 55/198 (27%), Gaps = 52/198 (26%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
+PSL L L + NL+ L L ++ + ++ L+ L M
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---MPNLTPLVGLEELEM 225
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
+ F + F +L+ L + N+ I L+ L +
Sbjct: 226 SGNHFP-EIRPGSFHGLSSLKKLW-------VMNSQVSLIE--RNAFDGLASLVELN--- 272
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN------ 186
+N L+S+ F L+ L L+L N
Sbjct: 273 -----LAHN------NLSSLP------HDLF-------TPLRY--LVELHLHHNPWNCDC 306
Query: 187 ----FPNWLVENNTNLET 200
WL E T
Sbjct: 307 DILWLAWWLREYIPTNST 324
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L+S+ + + ++++ L + LNL+HNNL+ F+ L+ + L L +N
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Query: 626 LLH 628
+
Sbjct: 301 PWN 303
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 58/249 (23%), Positives = 88/249 (35%), Gaps = 23/249 (9%)
Query: 235 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLT-GEIPERMATGC 293
+P I L L N F + L +L +S N L+ + G
Sbjct: 21 SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 294 FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSL-SNCRLLAGLYLSDN 352
L+ L LS N + + S L L L +N S+ + R L L +S
Sbjct: 78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 353 HLSGRIPRWLGNLSALEDIRMSNNN-LEGPIPIEFCQLDYLTILDLSNNAI-------FG 404
H LS+LE ++M+ N+ E +P F +L LT LDLS + F
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 405 TLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPN--WINILPQ 462
+L S ++ +++S N L LD S N + +
Sbjct: 197 SLSS------LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSS 249
Query: 463 LSSLLLGNN 471
L+ L L N
Sbjct: 250 LAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 63/285 (22%), Positives = 104/285 (36%), Gaps = 47/285 (16%)
Query: 177 DLSHLNLS---GNFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSYQKLAILDVSK 229
+ L+ P ++ L L +N L G F +L L +S
Sbjct: 13 RCNSKGLTSVPTGIP-------SSATRLELESNKLQSLPHGVF----DKLTQLTKLSLSS 61
Query: 230 NFFQ-GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPER 288
N + L L+LS N ++ S+F ++ LE LD ++ L ++ E
Sbjct: 62 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEF 119
Query: 289 MA-TGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEI-SDSLSNCRLLA 345
L L +S+ + + F+ F L++L L++ GN+F D + R L
Sbjct: 120 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178
Query: 346 GLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGT 405
L LS L P +LS+L+ + MS+NN + L+ L +LD S N I +
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Query: 406 LPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450
+ L L+L+ N F
Sbjct: 239 KKQELQH-------FPSS---------------LAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 6e-20
Identities = 47/231 (20%), Positives = 79/231 (34%), Gaps = 27/231 (11%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ-GHIFSKKF-NLTNLMRLQLDGN 328
RL++ N+L +P + L L+LS+N L S+ T+L L L N
Sbjct: 30 ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 329 NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPR-WLGNLSALEDIRMSNNNLEGPIPIEFC 387
+S + L L ++L +L L + +S+ + F
Sbjct: 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 388 QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYN 447
L L +L ++ N + E L I + L LDLS
Sbjct: 148 GLSSLEVLKMAGN----------------------SFQENFLPDIFTELRNLTFLDLSQC 185
Query: 448 RFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
+ P N L L L + +N L ++++D S N++
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 54/295 (18%), Positives = 96/295 (32%), Gaps = 63/295 (21%)
Query: 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLS 123
+S L ++ + + +L F K L L LS+N + F +
Sbjct: 27 PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLS-------LSSNGLSFKGCCSQSDFGTT 78
Query: 124 KLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL 183
LK D +N + ++S F L++ D H NL
Sbjct: 79 SLKYLDLS--------FN------GVITMS-------SNFLGL----EQLEHLDFQHSNL 113
Query: 184 SGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY 243
+ + NL L +++ F G
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTH----------------TRVAFNGIFNG--------- 148
Query: 244 LPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALS 302
L L L ++ N+F + F +++ L LD+S QL ++ L++L +S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207
Query: 303 NNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSN-CRLLAGLYLSDNHLS 355
+NN + + + L +L L N+ L + LA L L+ N +
Sbjct: 208 HNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 58/308 (18%), Positives = 97/308 (31%), Gaps = 73/308 (23%)
Query: 8 LQSI--GSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFT 65
L S+ G S L L ++ + T L +L L + L S
Sbjct: 19 LTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCS------ 71
Query: 66 SLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKL 125
Q +L++LD LS N + + L L L
Sbjct: 72 ------------------QSDFGTTSLKYLD-------LSFNGVITMSSNFLGLEQLEHL 106
Query: 126 KTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG 185
+ ++ L +S + F L+N L +L++S
Sbjct: 107 -----------DFQHS------NLKQMS-----EFSVF-------LSLRN--LIYLDISH 135
Query: 186 N----FPNWLVENNTNLETLLLANNSLFGSF-RMPIHSYQKLAILDVSKNFFQGHIPVEI 240
N + ++LE L +A NS +F + L LD+S+ + +
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194
Query: 241 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF-LLEIL 299
L L LN+S N F + + L+ LD S N + ++ L L
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFL 253
Query: 300 ALSNNNLQ 307
L+ N+
Sbjct: 254 NLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 26/184 (14%)
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR--IPRWLGNLSALEDIRMSN 375
++ RL+L+ N L L LS N LS + + ++L+ + +S
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHD 435
N + + F L+ L LD ++ + + S+
Sbjct: 88 NGVIT-MSSNFLGLEQLEHLDFQHSNL-KQMSE---------------------FSVFLS 124
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLL-GNNYIEGEIPVQLCELKEVRLIDLSH 494
L+ LD+S+ + N L L L + GN++ E +P EL+ + +DLS
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 495 NNLS 498
L
Sbjct: 185 CQLE 188
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L +++ +DLS +L ++ L+ + LN+SHNN + L ++ LD S
Sbjct: 174 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 625 NLLH-------GKIPSQLTVLN 639
N + PS L LN
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLN 254
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLT--GTIPTTFSNLKQIESLDL 622
I +S + ++L NKL LT++ L+LS N L+ G + ++ LDL
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85
Query: 623 SYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTF 665
S+N + + S L L ++NL ++++FS F
Sbjct: 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-----QMSEFSVF 122
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L+S+ + ++ N I L + L+LS L PT F++L ++ L++S+
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQ--FSTFEEDSYEGNPFLC 677
N LN+L V + N++ + Q S+ + N F C
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFAC 262
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 566 LTSMSGIDLSCNKLT--GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623
LT ++ + LS N L+ G T + L+LS N + T+ + F L+Q+E LD
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 109
Query: 624 YNLLHGKIPSQ--LTVLNTLAVFKVAYNNLSGKIPDRV 659
++ L ++ L L +++ + + +
Sbjct: 110 HSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 34/199 (17%), Positives = 64/199 (32%), Gaps = 49/199 (24%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
SL +L L +S+T+ N + ++LE L + + + L +L +L +
Sbjct: 124 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
+ L F +L+ L+ +S+N+FF + L+ L+ D
Sbjct: 183 SQCQLE-QLSPTAFNSLSSLQVLN-------MSHNNFFSLDTFP--YKCLNSLQVLD--- 229
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN------ 186
N + + F L+ LNL+ N
Sbjct: 230 -----YSLN------HIMTSK------KQELQHFPSS--------LAFLNLTQNDFACTC 264
Query: 187 ----FPNWLVENNTNLETL 201
F W+ + L +
Sbjct: 265 EHQSFLQWIKDQRQLLVEV 283
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 572 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK- 630
I + LT +PT I + L L N L F L Q+ L LS N L K
Sbjct: 12 IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 631 -IPSQLTVLNTLAVFKVAYNNLS 652
+L +++N +
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVI 91
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 58/283 (20%), Positives = 101/283 (35%), Gaps = 41/283 (14%)
Query: 235 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF 294
+P EI P L+L N + F ++ L L + N+++ +I E+ +
Sbjct: 47 AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLR 102
Query: 295 LLEILALSNNNL---QGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351
L+ L +S N+L ++ S +L+ L++ N S R + + +
Sbjct: 103 KLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156
Query: 352 NHLSGRI--PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI------- 402
N L P L L +R+S L G IP + + L L L +N I
Sbjct: 157 NPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELED 212
Query: 403 FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQ 462
+ ++ L N+I + P L L L N+ +P + L
Sbjct: 213 LLRYSK------LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265
Query: 463 LSSLLLGNNYIEGEIPVQ-------LCELKEVRLIDLSHNNLS 498
L + L N I ++ V + I L +N +
Sbjct: 266 LQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 58/291 (19%), Positives = 94/291 (32%), Gaps = 31/291 (10%)
Query: 176 ADLSHLNLSGNF----PNWLVENNTNLETLLLANNSL----FGSFRMPIHSYQKLAILDV 227
D + L+L N + +L L+L NN + +F +KL L +
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS----PLRKLQKLYI 109
Query: 228 SKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPE 287
SKN IP + L++L + N F+ ++ + +++ N L E
Sbjct: 110 SKNHLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165
Query: 288 RMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISD-SLSNCRLLAG 346
A L L +S L I L L LD N I L L
Sbjct: 166 PGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYR 221
Query: 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI---- 402
L L N + L L L ++ + NN L +P L L ++ L N I
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVG 280
Query: 403 ---FGTLPSCFSPAFIEQVHLSKNKIEGQL--ESIIHDSPYLVTLDLSYNR 448
F + A+ + L N + + + + +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 64/397 (16%), Positives = 117/397 (29%), Gaps = 131/397 (32%)
Query: 15 PSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQD 74
P L L + + + + +L L+L + +
Sbjct: 54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS--------------------- 91
Query: 75 SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLF-NLSKLKTFDGEIW 133
+H + F + L+ L +S NH +IP L +L +L+
Sbjct: 92 -----KIHEKAFSPLRKLQKLY-------ISKNHLVEIP---PNLPSSLVELRI------ 130
Query: 134 AETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVE 193
H N + + G F L+N ++ + + GN
Sbjct: 131 -----HDNRIR------------KVPKGVF-------SGLRN--MNCIEMGGN------- 157
Query: 194 NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS 253
LE + G KL L +S+ IP ++ L +L+L
Sbjct: 158 ---PLENSGFEPGAFDGL---------KLNYLRISEAKLT-GIPKDL---PETLNELHLD 201
Query: 254 RNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFS 312
N +I L RL + +NQ+ ++ S
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLGHNQIR----------------------MIENGSLS 238
Query: 313 KKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP-------RWLGNL 365
L L L LD N + + L + +LL +YL N+++ ++ +
Sbjct: 239 ---FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKR 293
Query: 366 SALEDIRMSNNNLEGPI--PIEFCQLDYLTILDLSNN 400
+ I + NN + P F + + N
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 44/280 (15%), Positives = 72/280 (25%), Gaps = 79/280 (28%)
Query: 12 GSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLS 71
SL L + V N+ + + + L S L YL
Sbjct: 120 NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178
Query: 72 MQD----SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIP-ISLEPLFNLSKLK 126
+ + + K + L L L +N I L L +L
Sbjct: 179 ISEAKLTGIPKDL--------PETLNELH-------LDHNKIQAIELEDLLRYSKLYRLG 223
Query: 127 TFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN 186
+N Q+ I+ G+ L L L+L N
Sbjct: 224 L-----------GHN------QIRM------IENGSL-------SFLPT--LRELHLDNN 251
Query: 187 ----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242
P L + L+ + L N+ I V N F PV G
Sbjct: 252 KLSRVPAGL-PDLKLLQVVYLHTNN----------------ITKVGVNDFC---PVGFGV 291
Query: 243 YLPGLMDLNLSRN--AFNGSIPSSFADMKMLERLDISYNQ 280
++L N + P++F + + +
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623
+ +++ + L NK+ I + ++++ L L HN + + S L + L L
Sbjct: 191 LPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249
Query: 624 YNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652
N L ++P+ L L L V + NN++
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
I + +DL N ++ L ++AL L +N ++ FS L++++ L +S
Sbjct: 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV 659
N L +IP L ++L ++ N + K+P V
Sbjct: 112 NHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGV 142
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNL 626
++ + +S KLT IP + ++ L+L HN + I ++ L L +N
Sbjct: 173 KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228
Query: 627 LHGKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
+ L+ L TL + N LS ++P
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L + + +S N L EIP + + L + N + FS L+ + +++ N
Sbjct: 101 LRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157
Query: 626 LL-HGKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
L + L +++ L+ IP
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK 189
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 66/327 (20%), Positives = 108/327 (33%), Gaps = 44/327 (13%)
Query: 196 TNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255
++ + L+ NS+ Q L L V + I L L+ L L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 256 AFNGSIPSS-FADMKMLERLDISYNQLTG-EIPERMATGCFLLEILALSNNNLQ----GH 309
F + + F + LE L ++ L G + LE+L L +NN++
Sbjct: 90 QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 310 IFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALE 369
F N+ L L N + L N + L LS++
Sbjct: 149 FFL---NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLSSIT 191
Query: 370 DIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF----IEQVHLSKNKI 425
M+ L + +T LDLS N ++ F A I+ + LS +
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251
Query: 426 EGQL--ESIIHDSP----------YLVTLDLSYNRFHGSIPNWI-NILPQLSSLLLGNNY 472
G + D + T DLS ++ ++ + + L L L N
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE 310
Query: 473 IEGEIPVQLCE-LKEVRLIDLSHNNLS 498
I +I L + ++LS N L
Sbjct: 311 IN-KIDDNAFWGLTHLLKLNLSQNFLG 336
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 4e-22
Identities = 81/479 (16%), Positives = 141/479 (29%), Gaps = 104/479 (21%)
Query: 5 SKVLQSIGSLP-SLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIAS 63
++ L + LP + + LS + + +L+ L +++ + ++
Sbjct: 19 NRGLHQVPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77
Query: 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLS 123
+SL L + + F L F NLE L L+
Sbjct: 78 LSSLIILKLDYNQFL-QLETGAFNGLANLEVLT-------LTQC---------------- 113
Query: 124 KLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL 183
L LSG F L + L L L
Sbjct: 114 ------------------------NLDGAVLSG----NFFKP-------LTS--LEMLVL 136
Query: 184 SGN-----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPV 238
N P N L L N + S + +L+ F
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFN--------KVKSICEEDLLNFQGKHFTL---- 184
Query: 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298
L + +++ + + LD+S N + +R +I
Sbjct: 185 ---LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRI 358
+L +N S D F G + + LS + + +
Sbjct: 242 QSLILSNSYNMGSSFGHTN----FKDPDNFTFKGLEASGVKT------CDLSKSKIFALL 291
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF---- 414
+ + LE + ++ N + F L +L L+LS N + G++ S F
Sbjct: 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSR---MFENLD 347
Query: 415 -IEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWI-NILPQLSSLLLGNN 471
+E + LS N I + P L L L N+ S+P+ I + L L + L N
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 7e-21
Identities = 79/437 (18%), Positives = 146/437 (33%), Gaps = 70/437 (16%)
Query: 260 SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLT 318
+P A + +D+S N + E+ E + L+ L + I + F L+
Sbjct: 24 QVPELPAH---VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79
Query: 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL-SGRIPR-WLGNLSALEDIRMSNN 376
+L+ L+LD N F + + + L L L+ +L + + L++LE + + +N
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 377 NLEGPIP-IEFCQLDYLTILDLSNNAIFGTLPSCF---SPAFIEQVHLSKNKIEGQLESI 432
N++ P F + +LDL+ N + + LS +
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL------- 192
Query: 433 IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDL 492
D++ +++L L N + + + + I
Sbjct: 193 ---------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243
Query: 493 SHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLP--TQSGPPMGKEETV 550
+ S + + +T+ T G +T
Sbjct: 244 LILSNSYNMGSSFGHTNF-----------------------KDPDNFTFKGLEASGVKTC 280
Query: 551 QFTTKNMSYYYQG--RILTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTI 607
+ + + T + + L+ N++ +I LT + LNLS N L
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSID 339
Query: 608 PTTFSNLKQIESLDLSYNLLHGKIPSQ----LTVLNTLAVFKVAYNNLSGKIPDRVAQFS 663
F NL ++E LDLSYN + + Q L L LA+ N +PD + F
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELAL----DTNQLKSVPDGI--FD 392
Query: 664 TFEEDSY---EGNPFLC 677
NP+ C
Sbjct: 393 RLTSLQKIWLHTNPWDC 409
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 1e-19
Identities = 71/358 (19%), Positives = 129/358 (36%), Gaps = 38/358 (10%)
Query: 176 ADLSHLNLSGN----FPNWLVENNTNLETLLLANNSLFGSFRMPI-HSYQKLAILDVSKN 230
A +++++LS N +L+ L + + R L IL + N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 231 FFQGHIPVEIGTYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERLDISYNQLTGEIPER 288
F + L L L L++ +G++ + F + LE L + N + P
Sbjct: 90 QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 289 MATGCFLLEILALSNNNLQ---GHIFSK-------KFNLTNLMRLQLDGNNFTGEISDSL 338
+L L+ N ++ L+++ ++ E +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 339 SNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIR-------------MSNNNLEGPIPIE 385
+ L LS N + + + A I+ + N + P
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 386 FCQLDY--LTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTL 442
F L+ + DLS + IF L S FS +EQ+ L++N+I ++ +L+ L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 443 DLSYNRFHGSIPNWI-NILPQLSSLLLGNNYIEGEIPVQLCE-LKEVRLIDLSHNNLS 498
+LS N GSI + + L +L L L N+I + Q L ++ + L N L
Sbjct: 329 NLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 9e-18
Identities = 72/349 (20%), Positives = 117/349 (33%), Gaps = 49/349 (14%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSI-ASFTSLKYLS 71
L SL L L Y F + + NLE L L + +L + L + TSL+ L
Sbjct: 77 GLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135
Query: 72 MQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGE 131
++D+ K F + LD L+ N I F
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLD-------LTFNKVKSICEEDLLNFQGKHFTLLRLS 188
Query: 132 IWAETESHYNSVTPK------------------FQLTSISLSGYIDGGTFPKFLYHQHDL 173
+ + + + + D K
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248
Query: 174 KNADLSHL--NLSGNFPNWLVEN--NTNLETLLLANNSLF----GSFRMPIHSYQKLAIL 225
S + N+ + + ++T L+ + +F F + L L
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF----SHFTDLEQL 304
Query: 226 DVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQLTGE 284
+++N I L L+ LNLS+N GSI S F ++ LE LD+SYN +
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-A 361
Query: 285 IPERMATGCFLLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNNF 330
+ ++ G L+ LAL N L+ IF LT+L ++ L N +
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTNPW 407
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 7/208 (3%)
Query: 196 TNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255
+ + L N + + + L IL + N I T L L L+LS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90
Query: 256 AFNGSIPSS-FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKK 314
A S+ + F + L L + L E+ + G L+ L L +N LQ +
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148
Query: 315 F-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
F +L NL L L GN + + L L L N ++ P +L L + +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 374 SNNNLEGPIPIE-FCQLDYLTILDLSNN 400
NNL +P E L L L L++N
Sbjct: 209 FANNLSA-LPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 11/207 (5%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNN 329
+R+ + N+++ +P C L IL L +N L I + F L L +L L N
Sbjct: 34 SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91
Query: 330 FTGEIS-DSLSNCRLLAGLYLSDNHLSGRIP-RWLGNLSALEDIRMSNNNLEGPIPIE-F 386
+ + L L+L L + L+AL+ + + +N L+ +P + F
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTF 149
Query: 387 CQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLS 445
L LT L L N I F ++++ L +N++ D L+TL L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 446 YNRFHGSIPNWI-NILPQLSSLLLGNN 471
N ++P L L L L +N
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 45/189 (23%), Positives = 68/189 (35%), Gaps = 14/189 (7%)
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
R+ L GN + + S CR L L+L N L+ L+ LE + +S+N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 378 LEGPIPIE-FCQLDYLTILDLSNNAI-------FGTLPSCFSPAFIEQVHLSKNKIEGQL 429
+ F L L L L + F L + ++ ++L N ++
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA------LQYLYLQDNALQALP 145
Query: 430 ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRL 489
+ D L L L NR L L LLL N + P +L +
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 490 IDLSHNNLS 498
+ L NNLS
Sbjct: 206 LYLFANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 5e-13
Identities = 50/274 (18%), Positives = 82/274 (29%), Gaps = 74/274 (27%)
Query: 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLS 123
+ + + + + + FR +NL L L +N +I + L+
Sbjct: 31 PAASQRIFLHGNRIS-HVPAASFRACRNLTILW-------LHSNVLARIDAAA--FTGLA 80
Query: 124 KLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL 183
L+ D N+ QL S+ TF H L L L+L
Sbjct: 81 LLEQLDLS--------DNA-----QLRSVD------PATF-------HGLGR--LHTLHL 112
Query: 184 SGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239
L L+ L L +N+L +P +
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQDNAL-------------------------QALPDD 147
Query: 240 IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEIL 299
L L L L N + +F + L+RL + N++ + L L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTL 206
Query: 300 ALSNNNL---QGHIFSKKFNLTNLMRLQLDGNNF 330
L NNL + L L L+L+ N +
Sbjct: 207 YLFANNLSALPTEALA---PLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 49/299 (16%), Positives = 71/299 (23%), Gaps = 118/299 (39%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
+ +L L+L + LE+L L +QL S
Sbjct: 54 ACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS----DNAQLRS------------- 95
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
+ F L L L
Sbjct: 96 --------VDPATFHGLGRLHTLH-------LDRC------------------------- 115
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FP 188
L + G F L L +L L N P
Sbjct: 116 ---------------GLQELG------PGLF-------RGLAA--LQYLYLQDNALQALP 145
Query: 189 NWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM 248
+ + NL L L N I V + F+G L L
Sbjct: 146 DDTFRDLGNLTHLFLHGNR----------------ISSVPERAFRG---------LHSLD 180
Query: 249 DLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ 307
L L +N P +F D+ L L + N L+ +P L+ L L++N
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 12/118 (10%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L ++ + L N L +P L + L L N ++ F L ++ L L
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 625 NLLHGKIPSQ----LTVLNTLAVFKVAYNNLSGKIPDRV-AQFSTFEEDSYEGNPFLC 677
N + + L L TL +F NNLS +P A + NP++C
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLF---ANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 2/96 (2%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
I + I L N+++ + L L N L F+ L +E LDLS
Sbjct: 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 625 NLLHGKIPSQ-LTVLNTLAVFKVAYNNLSGKIPDRV 659
N + L L + L ++ +
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLS 623
L + +DLS N + L R+H L+L L + F L ++ L L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137
Query: 624 YNLLHGKIPSQ-LTVLNTLAVFKVAYNNLSGKIPDRV 659
N L +P L L + N +S +P+R
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERA 172
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 2e-22
Identities = 49/283 (17%), Positives = 98/283 (34%), Gaps = 30/283 (10%)
Query: 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQ 280
+ LD+S N +I L L L+ N N +I SF+ + LE LD+SYN
Sbjct: 54 VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111
Query: 281 LTGEIPERMATGCFLLEILALSNNNLQ----GHIFSKKFNLTNLMRLQLDGNNFTGEISD 336
L+ + L L L N + +FS +LT L L++ + +I
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQR 167
Query: 337 -SLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTIL 395
+ L L + + L P+ L ++ + + + + I + L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227
Query: 396 DLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPN 455
+L + + +++ + + + ++ +
Sbjct: 228 ELRDTDL---------------DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271
Query: 456 WINILPQLSSLLLGNNYIEGEIPVQLCE-LKEVRLIDLSHNNL 497
+N + L L N ++ +P + + L ++ I L N
Sbjct: 272 LLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 3e-21
Identities = 47/270 (17%), Positives = 102/270 (37%), Gaps = 22/270 (8%)
Query: 196 TNLETLLLANNSL----FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251
+++L L+NN + L L ++ N I + + L L L+
Sbjct: 52 EAVKSLDLSNNRITYISNSDL----QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106
Query: 252 LSRNAFNGSIPSS-FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310
LS N ++ SS F + L L++ N + + L+IL + N + I
Sbjct: 107 LSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 311 FSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWL-GNLSAL 368
K F LT L L++D ++ SL + + ++ L L + S++
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSV 224
Query: 369 EDIRMSNNNLEGPIPIE--------FCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHL 420
E + + + +L+ E + + +++ ++F + + + ++
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284
Query: 421 SKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450
S+N+++ + I L + L N +
Sbjct: 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 4e-19
Identities = 47/268 (17%), Positives = 92/268 (34%), Gaps = 41/268 (15%)
Query: 245 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNN 304
+ L+LS N S L+ L ++ N + I E + LE L LS N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110
Query: 305 NLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDS--LSNCRLLAGLYLSDNHLSGRIP-R 360
L ++ S F L++L L L GN + + ++ S+ L L + + +I +
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 361 WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVH 419
L+ LE++ + ++L+ P + ++ L L L + +E +
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228
Query: 420 LSKNKIEG----QLESIIHDS----PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNN 471
L ++ +L + +S + ++ + +N + L L
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL----- 282
Query: 472 YIEGEIPVQLCELKEVRLIDLSHNNLSG 499
+ S N L
Sbjct: 283 -------------------EFSRNQLKS 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 65/338 (19%), Positives = 114/338 (33%), Gaps = 78/338 (23%)
Query: 64 FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLS 123
++K L + ++ + D ++ NL+ L L++N I +L
Sbjct: 51 TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALV-------LTSNGINTIEEDS--FSSLG 100
Query: 124 KLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL 183
L+ D YN L+++S F L + L+ LNL
Sbjct: 101 SLEHLDL--------SYN------YLSNLS------SSWF-------KPLSS--LTFLNL 131
Query: 184 SGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY 243
GN +TL SLF KL IL V I +
Sbjct: 132 LGN----------PYKTLG--ETSLFSHLT-------KLQILRVGNMDTFTKIQRKDFAG 172
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L L +L + + P S ++ + L + Q + E +E L L +
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRD 231
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG 363
+L F+ + L + ++SL + ++D L ++ + L
Sbjct: 232 TDLDT------FHFSELSTGE----------TNSLIKKFTFRNVKITDESLF-QVMKLLN 274
Query: 364 NLSALEDIRMSNNNLEGPIPIE-FCQLDYLTILDLSNN 400
+S L ++ S N L+ +P F +L L + L N
Sbjct: 275 QISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 46/320 (14%), Positives = 85/320 (26%), Gaps = 66/320 (20%)
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
+ L L N T + L C L L L+ N ++ +L +LE + +S N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 378 LEGPIPIE-FCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS 436
L + F L LT L+L N S+
Sbjct: 112 LSN-LSSSWFKPLSSLTFLNLLGNPY-----KTLGET-----------------SLFSHL 148
Query: 437 PYLVTLDLSYNRFHGSIP-NWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495
L L + I L L L + + ++ P L ++ V + L
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208
Query: 496 NLSGYIPA-------CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEE 548
+ + L + + + + T S
Sbjct: 209 QHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSEL----------STGETNSLIK----- 252
Query: 549 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIP 608
+ + ++ L ++ + ++ + L S N L
Sbjct: 253 -----------------KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPD 294
Query: 609 TTFSNLKQIESLDLSYNLLH 628
F L ++ + L N
Sbjct: 295 GIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 41/296 (13%), Positives = 82/296 (27%), Gaps = 80/296 (27%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
SL SL+ L LSY + + + ++L L L + S + T L+ L +
Sbjct: 98 SLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPI-SLEPLFNLSKLKTFDGE 131
+ + +DF LE L+ + + SL+ + N+S L
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELE-------IDASDLQSYEPKSLKSIQNVSHL------ 203
Query: 132 IWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWL 191
L
Sbjct: 204 ---------------------------------------------ILHMKQHI-LLLEIF 217
Query: 192 VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251
V+ +++E L L + + ++ + N ++
Sbjct: 218 VDVTSSVECLELRDT--------DLDTFHFSELSTGETNSLIK---------KFTFRNVK 260
Query: 252 LSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ 307
++ + + + L L+ S NQL +P+ + L+ + L N
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 41/266 (15%), Positives = 79/266 (29%), Gaps = 36/266 (13%)
Query: 378 LEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSP 437
E D I S+ + ++PS ++ + LS N+I S +
Sbjct: 19 KEESSNQASLSCDRNGICKGSSGS-LNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCV 76
Query: 438 YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCE-LKEVRLIDLSHNN 496
L L L+ N + + + L L L L NY+ + + L + ++L N
Sbjct: 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP 135
Query: 497 LSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556
+LGE ++ + + F
Sbjct: 136 Y----------KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-----------FAG-- 172
Query: 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQ 616
LT + +++ + L P + + + L L +
Sbjct: 173 ---------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223
Query: 617 IESLDLSYNLLHGKIPSQLTVLNTLA 642
+E L+L L S+L+ T +
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNS 249
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 57/205 (27%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIA--SFTSLKYL 70
L L+ L + ++ + + L + N+ LIL LL I +S++ L
Sbjct: 172 GLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECL 227
Query: 71 SMQD----SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLK 126
++D + L + + +++ FQ+ L + L +L
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFR----NVKITDESLFQVMKLLNQISGLLEL- 282
Query: 127 TFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN 186
E N QL S+ G F L + L + L N
Sbjct: 283 ----------EFSRN------QLKSVP------DGIF-------DRLTS--LQKIWLHTN 311
Query: 187 -----------FPNWLVENNTNLET 200
WL +N+ +
Sbjct: 312 PWDCSCPRIDYLSRWLNKNSQKEQG 336
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
++ + L+ N + I L + L+LS+N L+ + F L + L+L
Sbjct: 75 CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133
Query: 625 NLLHGKIP-SQLTVLNTLAVFKVAYNNLSGKIPDRV 659
N S + L L + +V + KI +
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 99.7 bits (248), Expect = 5e-22
Identities = 63/363 (17%), Positives = 115/363 (31%), Gaps = 39/363 (10%)
Query: 177 DLSHLNLSGNFPNWLVE-----NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNF 231
L G N V L L +L +P + ++ +L++++N
Sbjct: 35 KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS---SLPDNLPPQITVLEITQNA 91
Query: 232 FQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMAT 291
+P L L+ N + ++P A L+ LD+ NQLT +PE A
Sbjct: 92 LI-SLPELPA----SLEYLDACDNRLS-TLPELPA---SLKHLDVDNNQLT-MLPELPA- 140
Query: 292 GCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351
LLE + NN L + T+L L + N T + + + L L +S
Sbjct: 141 ---LLEYINADNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPELPES---LEALDVST 189
Query: 352 NHLSGRIPRWLGNLSALED----IRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLP 407
N L +P E+ R N + IP LD + L +N + +
Sbjct: 190 NLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPL-SSRI 246
Query: 408 SCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467
Q +I + ++ + D F + + ++ +
Sbjct: 247 RESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE 306
Query: 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED-YHEEGPPTSIWCD 526
N +L + R ++ ++ L + + T D
Sbjct: 307 EHANTFS-AFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCED 365
Query: 527 RAS 529
R +
Sbjct: 366 RVA 368
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 95.8 bits (238), Expect = 1e-20
Identities = 58/271 (21%), Positives = 96/271 (35%), Gaps = 48/271 (17%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADM----KMLERLDISY---NQLTGEIPERMATGCFL- 295
LP + +LS+N+F +I ++AD E+ + N+ + E C +
Sbjct: 5 LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-----CLIN 59
Query: 296 -LEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351
L L+ NL ++ + L++ N + + ++ L L D
Sbjct: 60 QFSELQLNRLNLSSLPDNLPP------QITVLEITQNALI-SLPELPAS---LEYLDACD 109
Query: 352 NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS 411
N LS +P +L L + NN L +P L ++ NN + LP
Sbjct: 110 NRLS-TLPELPASLKHL---DVDNNQLTM-LPELPAL---LEYINADNNQL-TMLPE--L 158
Query: 412 PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL---- 467
P +E + + N++ L + L LD+S N S+P
Sbjct: 159 PTSLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFR 213
Query: 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
N I IP + L I L N LS
Sbjct: 214 CRENRIT-HIPENILSLDPTCTIILEDNPLS 243
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 2e-14
Identities = 55/338 (16%), Positives = 100/338 (29%), Gaps = 88/338 (26%)
Query: 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNL-EGPIPIEFCQLDYLTILDLSNNAIFGTLP 407
N +SG + E + N E ++ C ++ + L L+ + +LP
Sbjct: 17 SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL-SSLP 75
Query: 408 SCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467
P + L+++ N S+P L L
Sbjct: 76 DNLPPQ-------------------------ITVLEITQNALI-SLPELP---ASLEYLD 106
Query: 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDR 527
+N + +P LK +D+ +N L+ +P L I D
Sbjct: 107 ACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELP--ALL----------EYINADN 149
Query: 528 ASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI 587
+ LP TS+ + + N+LT +P
Sbjct: 150 NQLT---MLPEL--------------------------PTSLEVLSVRNNQLT-FLPELP 179
Query: 588 GYLTRIHALNLSHNNLTGTIPTTFSNLKQIES----LDLSYNLLHGKIPSQLTVLNTLAV 643
L L++S N L ++P E N + IP + L+
Sbjct: 180 ESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234
Query: 644 FKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681
+ N LS +I + ++Q T + D + +
Sbjct: 235 IILEDNPLSSRIRESLSQQ-TAQPDYHGPRIYFSMSDG 271
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 2e-14
Identities = 52/338 (15%), Positives = 93/338 (27%), Gaps = 81/338 (23%)
Query: 301 LSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRL--LAGLYLSDNHLSGRI 358
N + G + L G N E L C + + L L+ +LS +
Sbjct: 17 SFYNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSELQLNRLNLS-SL 74
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQV 418
P L + + ++ N L +P L LD +N
Sbjct: 75 PDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDN------------------ 110
Query: 419 HLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478
+L ++ L LD+ N+ +P L + NN + +P
Sbjct: 111 ---------RLSTLPELPASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLP 156
Query: 479 VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPT 538
L+ + + +N L+ ++P SL ++ + P +P
Sbjct: 157 ELPTSLEV---LSVRNNQLT-FLPELP--ESL----------EALDVSTNLLESLPAVPV 200
Query: 539 QSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598
++ + N++T IP I L + L
Sbjct: 201 RNH----------------------HSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237
Query: 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636
N L+ I + S Q T
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 2e-12
Identities = 51/325 (15%), Positives = 95/325 (29%), Gaps = 64/325 (19%)
Query: 41 NLEELILDKSDLHVSQLLSSI-ASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGW 99
N L + +S + +++ + ++ A+ L
Sbjct: 9 NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQ--- 65
Query: 100 VQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYID 159
L+ + +P +L ++ + N L S+
Sbjct: 66 ----LNRLNLSSLPDNL-----PPQITVLE--------ITQN------ALISL------- 95
Query: 160 GGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSY 219
P+ A L +L+ N + L E +L+ L + NN L +P
Sbjct: 96 ----PELP--------ASLEYLDACDNRLSTLPELPASLKHLDVDNNQLT---MLP-ELP 139
Query: 220 QKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYN 279
L ++ N +P L L++ N +P + LE LD+S N
Sbjct: 140 ALLEYINADNNQLT-MLPELPT----SLEVLSVRNNQLT-FLPEL---PESLEALDVSTN 190
Query: 280 QLTGEIPERMATGCFLLE---ILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISD 336
L +P E N + HI +L + L+ N + I +
Sbjct: 191 LLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248
Query: 337 SLSNCRLLAGLYLSDNHLSGRIPRW 361
SLS + + S +
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQQ 273
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 55/410 (13%), Positives = 97/410 (23%), Gaps = 134/410 (32%)
Query: 14 LPSLKTLYLSYTNFTGTVVNQELHN-FTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
P + L ++ L +LE L D +S L A
Sbjct: 79 PPQITVLEITQNALI------SLPELPASLEYLDA--CDNRLSTLPELPA---------- 120
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
+L+HLD + NN +P L +
Sbjct: 121 ------------------SLKHLD-------VDNNQLTMLPELPA---LLEYI------- 145
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLV 192
+ N QLT + P+ L L++ N +L
Sbjct: 146 ----NADNN------QLTML-----------PELPTS--------LEVLSVRNNQLTFLP 176
Query: 193 ENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY---LPGLMD 249
E +LE L ++ N L +P +
Sbjct: 177 ELPESLEALDVSTNLL-------------------------ESLPAVPVRNHHSEETEIF 211
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGH 309
N IP + + + + N L+ I E ++ +
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ---QTAQPDYHGPRIYFS 267
Query: 310 IFSKKFNLTNLMRLQLDGNNFTGEISDSLSNC--------------RLLAGLYLSDNH-- 353
+ + N + F +S L L + +
Sbjct: 268 MSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARN 327
Query: 354 ---LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNN 400
++ WL LSA ++R + + LT +L
Sbjct: 328 TSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKT 377
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 6e-22
Identities = 78/446 (17%), Positives = 135/446 (30%), Gaps = 73/446 (16%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDK---SDLHVSQLLSSIASFTS 66
S L +L +L ++ T + T L +LI + L +SQ T+
Sbjct: 37 SEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITTLDLSQN-------TN 86
Query: 67 LKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLK 126
L YL+ + L D L +L+ N ++ +S L
Sbjct: 87 LTYLACDSN----KLTNLDVTPLTKLTYLN-------CDTNKLTKLDVS-----QNPLLT 130
Query: 127 TFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDL----KNADLSHLN 182
+ N LT I +S L + L+ L+
Sbjct: 131 YLN--------CARN------TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176
Query: 183 LSGNFPNWL-VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIG 241
S N L V N L L N++ ++ ++ +L LD S N I V
Sbjct: 177 CSFNKITELDVSQNKLLNRLNCDTNNI---TKLDLNQNIQLTFLDCSSNKLT-EIDV--- 229
Query: 242 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301
T L L + S N + S + L L L EI T L
Sbjct: 230 TPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EID---LTHNTQLIYFQA 282
Query: 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRW 361
+ + T L L T LS L LYL++ L+ +
Sbjct: 283 EGCRKIKELDVT--HNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD-- 334
Query: 362 LGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLS 421
+ + + L+ + N +++ ++ L + T+P + +S
Sbjct: 335 VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVS 391
Query: 422 KNKIEGQLESIIHDSPYLVTLDLSYN 447
+ ++ + + D + N
Sbjct: 392 PDLLDQFGNPMNIEPGDGGVYDQATN 417
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 2e-21
Identities = 80/472 (16%), Positives = 144/472 (30%), Gaps = 54/472 (11%)
Query: 230 NFFQGHIPVEIGTYLPG--LMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPE 287
N + + P + + S + L LD + +T ++
Sbjct: 1 NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG 59
Query: 288 RMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347
L L ++NN+ S TNL L D N T + ++ L L
Sbjct: 60 --IEKLTGLTKLICTSNNITTLDLS---QNTNLTYLACDSNKLT---NLDVTPLTKLTYL 111
Query: 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLP 407
N L+ + + L + + N L I+ LT LD N L
Sbjct: 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD 165
Query: 408 SCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467
+ + S NKI E + + L L+ N + +N QL+ L
Sbjct: 166 VTPQTQ-LTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLD 218
Query: 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDR 527
+N + EI + L ++ D S N L+ + L + L T++ C +
Sbjct: 219 CSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTL--SKL----------TTLHCIQ 263
Query: 528 ASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI 587
L + Q T + +D +T E+ +
Sbjct: 264 TD------LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--L 314
Query: 588 GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647
++ L L++ LT + S+ +++SL + S + + L A
Sbjct: 315 SQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI-QDFSS-VGKIPALNNNFEA 369
Query: 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNGLTTVTTEADT 699
+P ++ G P++ D G+ T T
Sbjct: 370 EGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 7e-20
Identities = 52/308 (16%), Positives = 90/308 (29%), Gaps = 42/308 (13%)
Query: 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254
+ N + + A + + + L LD + +E L GL L +
Sbjct: 17 DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTGLTKLICTS 73
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKK 314
N ++ + L L N+LT + T L L N L S
Sbjct: 74 NNIT-TLD--LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVS-- 124
Query: 315 FNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374
L L N T +S+ L L N ++ + + L + S
Sbjct: 125 -QNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178
Query: 375 NNNLEGPIPIEFCQLDYLTILDLSNNAI----FGTLPSCFSPAFIEQVHLSKNKIEGQLE 430
N + ++ Q L L+ N I + + S N +L
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTNNITKLDLNQNIQ------LTFLDCSSN----KLT 225
Query: 431 SI-IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRL 489
I + L D S N + ++ L +L++L + EI L ++
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIY 279
Query: 490 IDLSHNNL 497
Sbjct: 280 FQAEGCRK 287
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 2e-21
Identities = 56/305 (18%), Positives = 92/305 (30%), Gaps = 33/305 (10%)
Query: 177 DLSHLNLSGNFPNW-------------LVENNTNLETLLLANNSLFGSFRMPIHS-YQKL 222
+ N S P+W L +LE LL ++ + L
Sbjct: 11 ESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSL 70
Query: 223 AILDVSKNFFQGHIPVEIGTYL--PGLMDLNLSRNAFNGSIPSSFADMKM--LERLDISY 278
L V I L GL +L L G+ P + L L++
Sbjct: 71 KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130
Query: 279 NQLTGEIPERMATGCFL---LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEIS 335
+L L++L+++ + + L L L N GE
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190
Query: 336 DSLSNC----RLLAGLYLSDNH---LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQ 388
+ C L L L + SG L+ + +S+N+L C
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250
Query: 389 -LDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYN 447
L L+LS + +P + + LS N+++ + P + L L N
Sbjct: 251 WPSQLNSLNLSFTGL-KQVPKGLPAK-LSVLDLSYNRLDRN--PSPDELPQVGNLSLKGN 306
Query: 448 RFHGS 452
F S
Sbjct: 307 PFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 2e-16
Identities = 57/278 (20%), Positives = 82/278 (29%), Gaps = 21/278 (7%)
Query: 90 KNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQL 149
++LE+L F I SL +L +L I + V L
Sbjct: 43 RSLEYLLKRV-DTEADLGQFTDIIKSL----SLKRLTVRAARIPSRILFGALRVLGISGL 97
Query: 150 TSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN-FPNWLVE----NNTNLETLLLA 204
++L GT P L L+ N+S WL E L+ L +A
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 205 NNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE---IGTYLPGLMDLNLSRNAFN--- 258
+ + L+ LD+S N G + P L L L
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217
Query: 259 GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLT 318
G + A L+ LD+S+N L L L LS L+ +
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274
Query: 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG 356
L L L N + S + L L N
Sbjct: 275 KLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 6e-13
Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 21/230 (9%)
Query: 295 LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAG---LYLSD 351
L +L + F+ +L RL + I ++G L L +
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 352 NHLSGRIPRWLGNLS--ALEDIRMSNNNLEGPIP----IEFCQLDYLTILDLSNNAIFGT 405
++G P L + L + + N + ++ L +L ++
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-N 163
Query: 406 LPSCFSPAF--IEQVHLSKNKIEGQLESII----HDSPYLVTLDLSYNRFH---GSIPNW 456
F + + LS N G+ I P L L L G
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223
Query: 457 INILPQLSSLLLGNNYIEGEIPVQLCE-LKEVRLIDLSHNNLSGYIPACL 505
QL L L +N + C+ ++ ++LS L +P L
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL 272
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 2e-09
Identities = 55/301 (18%), Positives = 82/301 (27%), Gaps = 88/301 (29%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASF-----TSL 67
+ L+ L L TGT L T + IL+ ++ + + +A L
Sbjct: 93 GISGLQELTLENLEVTGT-APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
K LS+ + + R F L LD LS+N
Sbjct: 152 KVLSIAQAHS-LNFSCEQVRVFPALSTLD-------LSDNPE------------------ 185
Query: 128 FDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNF 187
L L + FP L L L
Sbjct: 186 ---------------------LGERGLISALCPLKFPT------------LQVLALRNA- 211
Query: 188 PNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL 247
+ET ++L + +L LD+S N + + L
Sbjct: 212 ---------GMETPSGVCSALAAAR-------VQLQGLDLSHNSLRDAAGAPSCDWPSQL 255
Query: 248 MDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ 307
LNLS +P L LD+SYN+L P + L+L N
Sbjct: 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNPSP--DELPQVGNLSLKGNPFL 309
Query: 308 G 308
Sbjct: 310 D 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 44/308 (14%), Positives = 84/308 (27%), Gaps = 51/308 (16%)
Query: 361 WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI----FGTLPSCFSPAFIE 416
+ G S ++ + + + + L L + I + ++
Sbjct: 39 YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98
Query: 417 QVHLSKNKIEG--QLESIIHDSPYLVTLDLSYNRFHGSIPNWIN-----ILPQLSSLLLG 469
++ L ++ G + P L L+L + W+ + P L L +
Sbjct: 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIA 157
Query: 470 NNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRAS 529
+ Q+ + +DLS N G
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--------------------------- 190
Query: 530 VYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSG---IDLSCNKLTGEIPTQ 586
P + ++ + + +DLS N L
Sbjct: 191 ---LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247
Query: 587 I-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFK 645
+ +++++LNLS L + L LDLSYN L PS L +
Sbjct: 248 SCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NPSPDE-LPQVGNLS 302
Query: 646 VAYNNLSG 653
+ N
Sbjct: 303 LKGNPFLD 310
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 5e-20
Identities = 89/516 (17%), Positives = 166/516 (32%), Gaps = 71/516 (13%)
Query: 5 SKVLQSI--GSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSI- 61
++ L + P K L LS + + + ++ + L L L + + L +
Sbjct: 40 NRNLTHVPKDLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI--RSLDFHVF 96
Query: 62 ASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLF- 120
L+YL + + L +L HLD LS N F +P+ F
Sbjct: 97 LFNQDLEYLDVSHN----RLQNISCCPMASLRHLD-------LSFNDFDVLPVC--KEFG 143
Query: 121 NLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSH 180
NL+KL + + + + DL
Sbjct: 144 NLTKLTF----LGLSAA----------KFRQLD---------LLPVAHLHLSCILLDLVS 180
Query: 181 LNLSGNFPNWLVENNTNLETLLLANNSLFGS-FRMPIHSYQKLAILDVSKNFFQ-GHIPV 238
++ G L NT + L+ NSLF M +++ L + ++ N +
Sbjct: 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT 240
Query: 239 EIGTYLPGLMDLNLSRNAFNGSIPS-----SFADMKMLERLDISYNQLTGEIPERMATGC 293
+ G LN++ + F + +E L+I +T I T
Sbjct: 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS 300
Query: 294 FL----LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYL 349
L I + N + + L ++ + L
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360
Query: 350 SDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS- 408
+ N + + + L L+ + + N L+ ++ L+ + ++ +L S
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSL-NSLNSH 418
Query: 409 -----CFSPAFIEQVHLSKNKIEGQLESIIHDS--PYLVTLDLSYNRFHGSIPNWINILP 461
C I ++LS N L + P + LDL NR SIP + L
Sbjct: 419 AYDRTCAWAESILVLNLSSN----MLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQ 473
Query: 462 QLSSLLLGNNYIEGEIPVQLCE-LKEVRLIDLSHNN 496
L L + +N ++ +P + + L ++ I L N
Sbjct: 474 ALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 4e-14
Identities = 70/460 (15%), Positives = 150/460 (32%), Gaps = 54/460 (11%)
Query: 196 TNLETLLLANNSL----FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251
+ L L+ NS+ +L +L +S N + + + + L L+
Sbjct: 52 PRTKALSLSQNSISELRMPDI----SFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLD 106
Query: 252 LSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL-LEILALSNNNLQGHI 310
+S N +I M L LD+S+N +P G L L LS + +
Sbjct: 107 VSHNRL-QNIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR-QL 161
Query: 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRL-LAGLYLSDNHLSGRIPRWLGNLSALE 369
+L + LD ++ + ++ S L+L + S + +++AL
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221
Query: 370 DIRMSNNNLEG-------PIPIEFCQLDYLTILDLSNNAI----FGTLPSCFSPAFIEQV 418
+++SN L E + L + L + L F P +E +
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281
Query: 419 HLSKNKIEGQLESIIHDS-----PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYI 473
++ I +++ L+ + F S ++ +++ +L +
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341
Query: 474 EGEIPVQLCELKEVRLIDLSHNNLSGYIP-ACLVYTSLGEDYHEEGPPTSIWCDRASVYG 532
V ++ + N + + C L + +
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN---------- 391
Query: 533 SPCLPTQSGPPMGKEETVQFTTKNMSYYYQG-----RILTSMSGIDLSCNKLTGEIPTQI 587
+ S S+ ++LS N LTG + +
Sbjct: 392 ---FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448
Query: 588 GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627
++ L+L +N + +IP ++L+ ++ L+++ N L
Sbjct: 449 --PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 9e-14
Identities = 78/478 (16%), Positives = 141/478 (29%), Gaps = 76/478 (15%)
Query: 177 DLSHLNLSGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFF 232
+L L LS N + N +LE L +++N L + L LD+S N F
Sbjct: 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDF 133
Query: 233 QGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMK-MLERLDISYNQLTGEIPERMAT 291
+ L L L LS F A + LD+ + G E +
Sbjct: 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193
Query: 292 GCFLLEILALSNNNLQGHIFSKKFNLT---NLMRLQLDGNNFTGEISDSLSNCRLLAGLY 348
+ L N+L + N L ++L+ N ++ R L
Sbjct: 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253
Query: 349 LSDNHLSGRIPRWLGNL-----SALEDIRMSNNNLEGPIP-----IEFCQLDYLTILDLS 398
++ H+ + +E + + N + I L L I +
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313
Query: 399 NNAIFGTLPSCFSPAFIEQV-HLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWI 457
N + + +S + LS + L+ + N F S+
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC 373
Query: 458 NILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE 517
+ L +L +L L N L + +
Sbjct: 374 STLKRLQTL------------------------ILQRNGL----------KNFFKVALMT 399
Query: 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMS------- 570
+S+ + S + T + + +LT
Sbjct: 400 KNMSSLETL--------DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK 451
Query: 571 --GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYN 625
+DL N++ IP + +L + LN++ N L ++P F L ++ + L N
Sbjct: 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 64/392 (16%), Positives = 129/392 (32%), Gaps = 58/392 (14%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDG 327
+ L +S N ++ E+ + L +L LS+N ++ H+F +L L +
Sbjct: 54 TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF---NQDLEYLDVSH 109
Query: 328 NNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRW--LGNLSALEDIRMSNNNLEGPIPIE 385
N +++ L L LS N +P GNL+ L + +S +
Sbjct: 110 NRLQNISCCPMAS---LRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165
Query: 386 FCQLDYLTI-LDLSNNAIFGTLPSCFSPAFIEQVHLSKNK---IEGQLESIIHDSPYLVT 441
L I LDL + I G +HL + Q+ ++ +L
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225
Query: 442 LDLSYNRFHG----SIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNL 497
++ N + + + + P L ++ L + + V+L + + + N+
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL--FQFFWPRPVEYLNI 283
Query: 498 SGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557
L T + T++ K ++ +
Sbjct: 284 YN-----LTITERIDREEFTYSETAL----------------------KSLMIEHVKNQV 316
Query: 558 SYYYQ---GRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 614
+ + + M+ LS + + LN + N T ++ S L
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376
Query: 615 KQIESLDLSYNLL-----HGKIPSQLTVLNTL 641
K++++L L N L + ++ L TL
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 5e-11
Identities = 52/363 (14%), Positives = 104/363 (28%), Gaps = 32/363 (8%)
Query: 296 LEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354
+ L+LS N++ + L+ L L+L N + L L +S N L
Sbjct: 54 TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 355 SGRIPRWLGNLSALEDIRMSNNNLEG-PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPA 413
I +++L + +S N+ + P+ EF L LT L LS
Sbjct: 113 QN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-----RQLDLL 164
Query: 414 FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYI 473
+ +HLS ++ LV+ + I L + N+
Sbjct: 165 PVAHLHLSCILLD------------LVSYHIKGGETES---LQIPNTTVLHLVFHPNSLF 209
Query: 474 EGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGS 533
++ + + L ++L ++ N+ + + T +
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV--TLQHIETTWKCSV 267
Query: 534 PCLPTQSGPPMGKEETVQFT----TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY 589
P+ T + Y L S+ +
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 590 LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYN 649
++ LS ++ + L+ + N+ + + L L + N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387
Query: 650 NLS 652
L
Sbjct: 388 GLK 390
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 61/334 (18%), Positives = 103/334 (30%), Gaps = 38/334 (11%)
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWL-GNLSALEDIRMSNN 376
L L N+ + +S L L LS N + + + LE + +S+N
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110
Query: 377 NLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS 436
L+ I C + L LDLS N F LP C F G L
Sbjct: 111 RLQN---ISCCPMASLRHLDLSFND-FDVLPVC--KEF------------GNLTK----- 147
Query: 437 PYLVTLDLSYNRFHGSIPNWINILPQLSSLL-LGNNYIEGEIPVQLCELKEVRLIDLSHN 495
L L LS +F + L LL L + +I+G L L + H
Sbjct: 148 --LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205
Query: 496 NLSGYIPACLVYTSLGEDYHEEGPPTSIWCDR---ASVYGSPCLPTQSGPPMGKEETVQF 552
N + + +LG C R + + E T +
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265
Query: 553 TTKNMSYYYQGRILT-SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTF 611
+ K +++ + ++ + ++ E L + ++ + + +
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 612 SNLKQIESLDLSYNLLHG------KIPSQLTVLN 639
S ++ LS + PS T LN
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLS 623
+ + LS N ++ I +L+ + L LSHN + ++ F + +E LD+S
Sbjct: 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS 108
Query: 624 YNLLHGKIP----SQLTVLN 639
+N L I + L L+
Sbjct: 109 HNRLQ-NISCCPMASLRHLD 127
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 83.2 bits (205), Expect = 1e-16
Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 22/257 (8%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
+ NL + + + + ++ ++++ + + + + + L L+
Sbjct: 20 FAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 74
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISD--SLSNCRLLAGLYLSDNHLSGRIPRW 361
N L I NL NL L LD N I D SL + + L L L N +S I
Sbjct: 75 NKLT-DIKPLT-NLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGIS-DIN-G 126
Query: 362 LGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLS 421
L +L LE + + NN + + +L L L L +N I + ++ ++LS
Sbjct: 127 LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLS 183
Query: 422 KNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481
KN I L ++ L L+L N + L +++ + + P +
Sbjct: 184 KNHIS-DLRALAG-LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEII 239
Query: 482 CELKEVRLIDLSHNNLS 498
+ + ++ +
Sbjct: 240 SDDGDYEKPNVKWHLPE 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 2e-14
Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 30/242 (12%)
Query: 263 SSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMR 322
+ ++ +T + + ++ + +N++++ L N+ +
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDIK--SVQGIQYLPNVTK 69
Query: 323 LQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPI 382
L L+GN T +I L+N + L L+L +N + L +L L+ + + +N +
Sbjct: 70 LFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDIN 125
Query: 383 PIEFCQLDYLTILDLSNNAI-----FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSP 437
+ L L L L NN I L ++ + L N+I +
Sbjct: 126 GLV--HLPQLESLYLGNNKITDITVLSRLTK------LDTLSLEDNQISD--IVPLAGLT 175
Query: 438 YLVTLDLSYNRFHGSIPNWINI--LPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495
L L LS N I + + L L L L + + L + +
Sbjct: 176 KLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231
Query: 496 NL 497
+L
Sbjct: 232 SL 233
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 4e-13
Identities = 52/283 (18%), Positives = 97/283 (34%), Gaps = 31/283 (10%)
Query: 170 QHDLKNADLSHLNLSGNFPNWL--VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227
Q++L + + + + + + ++ N+ L L N L + P+ + + L L +
Sbjct: 39 QNELNS--IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKPLTNLKNLGWLFL 94
Query: 228 SKNFFQGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIP 286
+N I + L L L+L N + I + + LE L + N++T +I
Sbjct: 95 DEN----KIKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DIT 147
Query: 287 ERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISD--SLSNCRLL 344
+ L+ L+L +N + LT L L L N+ ISD +L+ + L
Sbjct: 148 VL--SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH----ISDLRALAGLKNL 199
Query: 345 AGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFG 404
L L + NL ++ ++ +L P I D +
Sbjct: 200 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG-------DYEKPNVKW 252
Query: 405 TLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYN 447
LP + P +SY+
Sbjct: 253 HLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYD 295
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 2e-09
Identities = 48/289 (16%), Positives = 87/289 (30%), Gaps = 61/289 (21%)
Query: 36 LHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHL 95
F + L K + + S+ + +S K Q + N+ L
Sbjct: 17 DDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 70
Query: 96 DMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLS 155
L+ N ++ ++PL NL L N ++ +S
Sbjct: 71 F-------LNGN---KL-TDIKPLTNLKNLGWLF--------LDEN------KIKDLS-- 103
Query: 156 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLETLLLANNSLFGS 211
DLK L L+L N + + LE+L L NN + +
Sbjct: 104 -------------SLKDLKK--LKSLSLEHNGISDING--LVHLPQLESLYLGNNKI--T 144
Query: 212 FRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 271
+ KL L + N + L L +L LS+N S + A +K L
Sbjct: 145 DITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNL 199
Query: 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNL 320
+ L++ + + + + + + I S +
Sbjct: 200 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 248
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-06
Identities = 47/280 (16%), Positives = 101/280 (36%), Gaps = 64/280 (22%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
+ L S+ + + ++ Q + N+ +L L+ + L + + + +L
Sbjct: 36 AVTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTD---IKPLTNLKNL 89
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
+L + ++ K D K+L+ L L L +N I + L +L +L++
Sbjct: 90 GWLFLDENKIK------DLSSLKDLKKLKS----LSLEHN---GI-SDINGLVHLPQLES 135
Query: 128 FDGEIWAETESHYNSVTPKFQLTSIS-LSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN 186
N ++T I+ LS L L L+L N
Sbjct: 136 LYL--------GNN------KITDITVLSR----------------LTK--LDTLSLEDN 163
Query: 187 FPNWL--VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYL 244
+ + + T L+ L L+ N + S + + L +L++ + +
Sbjct: 164 QISDIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQ----ECLNKPINHQ 217
Query: 245 PGLMDLNLSRNAFNGSI--PSSFADMKMLERLDISYNQLT 282
L+ N +N +GS+ P +D E+ ++ ++
Sbjct: 218 SNLVVPNTVKN-TDGSLVTPEIISDDGDYEKPNVKWHLPE 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 5e-04
Identities = 35/260 (13%), Positives = 75/260 (28%), Gaps = 45/260 (17%)
Query: 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQE--------------------LHNFTNLEEL 45
++ + +L +L L+L + + + L + LE L
Sbjct: 78 TDIKPLTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 136
Query: 46 ILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILS 105
L + + ++ ++ T L LS++D+ L++L LS
Sbjct: 137 YLGNNKITD---ITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLY-------LS 183
Query: 106 NNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPK 165
NH L L L L + N + ++ DG
Sbjct: 184 KNHI----SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN---TDG----S 232
Query: 166 FLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAIL 225
+ + + D N+ + P + E + + + +++ +
Sbjct: 233 LVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTV 292
Query: 226 DVSKNFFQGHIPVEIGTYLP 245
+ VE GT +
Sbjct: 293 SYDVDGTVIKTKVEAGTRIT 312
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 1e-16
Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 18/187 (9%)
Query: 196 TNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255
+ L L+ N L+ + Y +L L++ + + V+ LP L L+LS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT--LPVLGTLDLSHN 87
Query: 256 AFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ---GHIFS 312
S+P + L LD+S+N+LT +P G L+ L L N L+ + +
Sbjct: 88 QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 313 KKFNLTNLMRLQLDGNNFT---GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALE 369
L +L L NN T + + L N L L L +N L IP+ L
Sbjct: 146 P---TPKLEKLSLANNNLTELPAGLLNGLEN---LDTLLLQENSLY-TIPKGFFGSHLLP 198
Query: 370 DIRMSNN 376
+ N
Sbjct: 199 FAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 4e-11
Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 18/181 (9%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG- 308
L+LS N ++ L +L++ +LT ++ +L L LS+N LQ
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQSL 92
Query: 309 -HIFSKKFNLTNLMRLQLDGNNFTGEIS----DSLSNCRLLAGLYLSDNHLSGRIPRWLG 363
+ L L L + N T + L L LYL N L P L
Sbjct: 93 PLLGQ---TLPALTVLDVSFNRLT-SLPLGALRGLGE---LQELYLKGNELKTLPPGLLT 145
Query: 364 NLSALEDIRMSNNNLEGPIPIE-FCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSK 422
LE + ++NNNL +P L+ L L L N+++ F + L
Sbjct: 146 PTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204
Query: 423 N 423
N
Sbjct: 205 N 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 347 LYLSDNHLS---GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403
+ +L+ +P+ L +S N L LT L+L +
Sbjct: 15 VNCDKRNLTALPPDLPKDTTIL------HLSENLLYTFSLATLMPYTRLTQLNLDRAEL- 67
Query: 404 GTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWI-NILPQ 462
L + + + LS N+++ L + P L LD+S+NR S+P L +
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE 125
Query: 463 LSSLLLGNNYIEGEIPVQLCE-LKEVRLIDLSHNNLS 498
L L L N ++ +P L ++ + L++NNL+
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L + +DLS N+L +P L + L++S N LT L +++ L L N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 626 LL 627
L
Sbjct: 135 EL 136
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 562 QGRILTSM-SGI-------DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSN 613
R LT++ + LS N L + TR+ LNL LT +
Sbjct: 18 DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGT 75
Query: 614 LKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV 659
L + +LDLS+N L +P L L V V++N L+ +P
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 24/222 (10%)
Query: 261 IPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ---GHIFSKKFNL 317
+P S + LD+S+N L + L++L LS +Q + +L
Sbjct: 26 LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
++L L L GN + S L L + +L+ +G+L L+++ +++N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 378 L-EGPIPIEFCQLDYLTILDLSNNAIFGTLPS-CFS-----PAFIEQVHLSKNKIEGQLE 430
+ +P F L L LDLS+N I ++ P + LS N + ++
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQ 193
Query: 431 SIIHDSPYLVTLDLSYNRFHGSIPNWI-NILPQLSSLLLGNN 471
L L L N+ S+P+ I + L L + L N
Sbjct: 194 PGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 556 NMSYYYQGRILTSM-SGI-------DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI 607
N++Y + + DLS N L + L+LS + TI
Sbjct: 9 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67
Query: 608 PT-TFSNLKQIESLDLSYNLLH---GKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQ 661
+ +L + +L L+ N + S L+ L L VA + +
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL----VAVETNLASLENFPIG 121
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 39/165 (23%)
Query: 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIE-FCQLDYLTILDLSNNAIFGT 405
L LS N L + L+ + +S ++ I + L +L+ L L+ N I +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI-QS 90
Query: 406 LPS-CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWI-NILPQL 463
L FS LS L L S+ N+ L L
Sbjct: 91 LALGAFS-------GLSS----------------LQKLVAVETNLA-SLENFPIGHLKTL 126
Query: 464 SSLLLGNNYIEGEIPV-----QLCELKEVRLIDLSHNNLSGYIPA 503
L + +N I+ + L L+ +DLS N + I
Sbjct: 127 KELNVAHNLIQ-SFKLPEYFSNLTNLEH---LDLSSNKIQ-SIYC 166
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L+ +S + L+ N + + L+ + L NL +LK ++ L++++
Sbjct: 75 LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 625 NLLHGKIP-----SQLTVLNTL 641
NL+ S LT L L
Sbjct: 134 NLIQ-SFKLPEYFSNLTNLEHL 154
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 54/265 (20%), Positives = 86/265 (32%), Gaps = 61/265 (23%)
Query: 55 SQLLSSIAS--FTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQI 112
I S K L + + + L F F L+ LD LS I
Sbjct: 16 ELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLD-------LSRCEIQTI 67
Query: 113 PISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHD 172
+LS L T N + S++ G F
Sbjct: 68 EDGA--YQSLSHLSTLI--------LTGN------PIQSLA------LGAF-------SG 98
Query: 173 LKNADLSHLNLSGN----FPNWLVENNTNLETLLLANNSL-----FGSFRMPIHSYQKLA 223
L + L L N+ + + L+ L +A+N + F + L
Sbjct: 99 LSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF----SNLTNLE 152
Query: 224 ILDVSKNFFQGHIPVEIGTYLPGL----MDLNLSRNAFNGSIPSSFADMKMLERLDISYN 279
LD+S N Q I L + + L+LS N N P +F +++ L+ L + N
Sbjct: 153 HLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTN 210
Query: 280 QLTGEIPERMATGCFLLEILALSNN 304
QL +P+ + L+ + L N
Sbjct: 211 QLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 39/203 (19%), Positives = 70/203 (34%), Gaps = 53/203 (26%)
Query: 8 LQSIGS-----LPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIA 62
+QS+ L SL+ L TN ++ N + + L+EL + + + +L +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 63 SFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNL 122
+ T+L++L + + + +++ D R + L++ L LS N I L
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL---SLDLSLNPMNFIQPGAFKEIRL 202
Query: 123 SKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLN 182
+L N QL S+ G F L + L +
Sbjct: 203 KEL-----------ALDTN------QLKSVP------DGIF-------DRLTS--LQKIW 230
Query: 183 LSGN-----------FPNWLVEN 194
L N WL +N
Sbjct: 231 LHTNPWDCSCPRIDYLSRWLNKN 253
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 2e-16
Identities = 59/388 (15%), Positives = 127/388 (32%), Gaps = 70/388 (18%)
Query: 175 NADLSHLNLSGNFPN-----WLVENNTNLETLLLANNSL-------FGSFRMPIHSYQKL 222
+ D+ L++ + L+ + + L + L S + L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA---LRVNPAL 58
Query: 223 AILDVSKNFFQGHIPVEIGTYL----PGLMDLNLSRNAFN----GSIPSSFADMKMLERL 274
A L++ N + L + L+L G + S+ + L+ L
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 275 DISYNQLTGE----IPERMATGCFLLEILALSNNNLQ----GHIFSKKFNLTNLMRLQLD 326
+S N L + E + LE L L +L + S + L +
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178
Query: 327 GNNFTGE----ISDSLSNCRL-LAGLYLSDNHLSGR----IPRWLGNLSALEDIRMSNNN 377
N+ + L + L L L ++ + + + ++L ++ + +N
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238
Query: 378 LEGPIPIEFCQ-----LDYLTILDLSNN--------AIFGTLPSCFSPAFIEQVHLSKNK 424
L E C L L + + L + S ++++ L+ N+
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES---LKELSLAGNE 295
Query: 425 IEGQ-----LESIIHDSPYLVTLDLSYNRFHG----SIPNWINILPQLSSLLLGNNYIEG 475
+ + E+++ L +L + F + + L L + NN +E
Sbjct: 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355
Query: 476 EIPVQLCE-LKEV----RLIDLSHNNLS 498
+LC+ L + R++ L+ ++S
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVS 383
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 64/388 (16%), Positives = 121/388 (31%), Gaps = 64/388 (16%)
Query: 174 KNADLSHLNLSGNFPN---------WLVENNTNLETLLLANNSL----FGSFRMPIHSYQ 220
N L+ LNL N L + ++ L L N L G + +
Sbjct: 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113
Query: 221 KLAILDVSKNFFQG----HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM----KMLE 272
L L +S N + + L L L + + + A + +
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 273 RLDISYNQLTGE----IPERMATGCFLLEILALSNNNLQ----GHIFSKKFNLTNLMRLQ 324
L +S N + + + + LE L L + + + + +L L
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233
Query: 325 LDGNNFTGE----ISDSL--SNCRLLAGLYLSDNHLSGR----IPRWLGNLSALEDIRMS 374
L N + L + RL L++ + ++ + + R L +L+++ ++
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRT-LWIWECGITAKGCGDLCRVLRAKESLKELSLA 292
Query: 375 NNNLEGPIPIEFCQL-----DYLTILDLSNNAIFGTLPSCFSPA-----FIEQVHLSKNK 424
N L C+ L L + + + S FS F+ ++ +S N+
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352
Query: 425 IEGQ-----LESIIHDSPYLVTLDLSYNRFH----GSIPNWINILPQLSSLLLGNNYIEG 475
+E + + L L L+ S+ + L L L NN +
Sbjct: 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412
Query: 476 EIPVQLCELKEV-----RLIDLSHNNLS 498
+QL E + L S
Sbjct: 413 AGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 3e-12
Identities = 70/449 (15%), Positives = 135/449 (30%), Gaps = 75/449 (16%)
Query: 16 SLKTLYLSYTNFTGTVVNQELHNFTNLEELILDK---SDLHVSQLLSSIASFTSLKYLSM 72
+++L + + + L + + LD ++ + S++ +L L++
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 73 QDSVF--KGALHGQDFRKFKN--LEHLDMGWVQL----------ILSNNHFFQIPISLEP 118
+ + G + + ++ L + L L +L+
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP------TLQE 117
Query: 119 LFNLS--KLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNA 176
L +LS L ++ E K QL SL L
Sbjct: 118 L-HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRA-----KP 170
Query: 177 DLSHLNLSGNFPN---------WLVENNTNLETLLLANNSL----FGSFRMPIHSYQKLA 223
D L +S N N L ++ LE L L + + + S L
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230
Query: 224 ILDVSKNFFQG----HIPVEIGTYLPGLMDLNLSRNAFN----GSIPSSFADMKMLERLD 275
L + N + + L L + G + + L+ L
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290
Query: 276 ISYNQLTGE----IPERMATGCFLLEILALSNNNLQG----HIFSKKFNLTNLMRLQLDG 327
++ N+L E + E + LE L + + + H S L+ LQ+
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350
Query: 328 NNFTGE----ISDSL-SNCRLLAGLYLSDNHLS----GRIPRWLGNLSALEDIRMSNNNL 378
N + L +L L+L+D +S + L +L ++ +SNN L
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
Query: 379 EGPIPIEFCQL-----DYLTILDLSNNAI 402
++ + L L L +
Sbjct: 411 GDAGILQLVESVRQPGCLLEQLVLYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 69/415 (16%), Positives = 120/415 (28%), Gaps = 94/415 (22%)
Query: 3 DGSKVLQS-IGSLPSLKTLYLSYTNFTGTVV----NQELHNFTNLEELILDK---SDLHV 54
G VL S + +LP+L+ L+LS + L LE+L L+ S
Sbjct: 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159
Query: 55 SQLLSSIASFTSLKYLSMQDSVF--KGALH-GQDFRKFK-NLEHLDMGWVQLILSNNHFF 110
L S + + K L++ ++ G Q + LE L L +
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK-------LESCG-- 210
Query: 111 QIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQ 170
++ + +L + V K L ++L G L
Sbjct: 211 ---VTSDNCRDLCGI-----------------VASKASLRELALGSNKLGDVGMAELCPG 250
Query: 171 HDLKNADLSHLNLSGNFPNW--------LVENNTNLETLLLANNSLFGS-----FRMPIH 217
++ L L + ++ +L+ L LA N L +
Sbjct: 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310
Query: 218 SYQKLAILDVSKNFFQGHIPVEIGTYL---PGLMDLNLSRNAFNGSIPSSFADM-----K 269
+L L V F + L L++L +S N +
Sbjct: 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370
Query: 270 MLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNN 329
+L L ++ ++ C L L N +L L L N
Sbjct: 371 VLRVLWLADCDVSDS-------SCSSL-AATLLAN-------------HSLRELDLSNNC 409
Query: 330 FTGE----ISDSL-SNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLE 379
+ +S+ LL L L D + S + L+ + +L
Sbjct: 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM------EDRLQALEKDKPSLR 458
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 7e-16
Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 33/228 (14%)
Query: 260 SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNN----LQGHIFSKKF 315
S+P S + L + L IP + + + +S + L+ H F
Sbjct: 28 SLPPS------TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--- 77
Query: 316 NLTNLMRLQLDGNNFTGEIS-DSLSNCRLLAGLYLSDNHLSGRIP--RWLGNLSALEDIR 372
NL+ + +++ I D+L LL L + + L P + + +
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136
Query: 373 MSNNNLEGPIPIE-FCQL-DYLTILDLSNNAIFGTLPSC-FSPAFIEQVHLSKNKIEGQL 429
+++N IP+ F L + L L NN ++ F+ ++ V+L+KNK L
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNK---YL 192
Query: 430 ESIIHDS-----PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNY 472
I D+ LD+S ++P+ L L L+ N +
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS--KGLEHLKELIARNTW 237
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-14
Identities = 32/188 (17%), Positives = 73/188 (38%), Gaps = 10/188 (5%)
Query: 222 LAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQ 280
L + + + IP + LP + + +S + + S SF ++ + ++I +
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 281 LTGEIPERMATGCFLLEILALSNNNLQGHI--FSKKFNLTNLMRLQLDGNNFTGEISDSL 338
I LL+ L + N L+ +K ++ L++ N + I +
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 339 --SNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIE-FCQL-DYLTI 394
C L L +N + + + N + L+ + ++ N I + F + ++
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209
Query: 395 LDLSNNAI 402
LD+S ++
Sbjct: 210 LDVSQTSV 217
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-12
Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 17/194 (8%)
Query: 317 LTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWL-GNLSALEDIRMSN 375
+ L+L + S + SN ++ +Y+S + ++ NLS + I + N
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 376 NNLEGPIPIE-FCQLDYLTILDLSNNAI--FGTLPSCFSPAFIEQVHLSKNKIEGQLESI 432
I + +L L L + N + F L +S + ++ N + SI
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP---YMTSI 146
Query: 433 IHDS-----PYLVTLDLSYNRFHGSIPNWINILPQLSSLLL-GNNYIEGEIPVQLCE--L 484
++ +TL L N F S+ + +L ++ L N Y+ I
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVY 204
Query: 485 KEVRLIDLSHNNLS 498
L+D+S +++
Sbjct: 205 SGPSLLDVSQTSVT 218
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 148 QLTSISLSG-----YIDGGTFPKFLYHQHDLKNADLSHLNLSGN-----FPNWLVENNTN 197
++ I +S ++ +F ++L ++H+ + ++
Sbjct: 56 NISRIYVSIDVTLQQLESHSF-------YNLSK--VTHIEIRNTRNLTYIDPDALKELPL 106
Query: 198 LETLLLANNSL--FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPG-LMDLNLSR 254
L+ L + N L F ++S IL+++ N + IPV L + L L
Sbjct: 107 LKFLGIFNTGLKMFPDLTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165
Query: 255 NAFNGSIPSS-FADMKMLERLDISYNQLTGEIPERMATGCF-LLEILALSNNNLQ---GH 309
N F S+ F K L+ + ++ N+ I + G + +L +S ++
Sbjct: 166 NGFT-SVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223
Query: 310 IFSKKFNLTNLMRLQLDGNNFT 331
+L L+ N +T
Sbjct: 224 GLE---HLKELIAR----NTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 36/174 (20%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
+L + + + T + L L+ L + + L + L+ + S L +
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
D+ + ++ F+ N + L L NN F + FN +KL
Sbjct: 138 TDNPYMTSIPVNAFQGLCNE------TLTLKLYNNGFTSVQGY---AFNGTKLDAVY--- 185
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN 186
+ N LT ID F + + S L++S
Sbjct: 186 -----LNKNK-----YLTV------IDKDAF-------GGVYSG-PSLLDVSQT 215
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 22/166 (13%), Positives = 55/166 (33%), Gaps = 30/166 (18%)
Query: 341 CRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNN 400
C ++ + RIP + + +++ +L F L ++ + +S +
Sbjct: 10 CHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65
Query: 401 AIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP-NWINI 459
L S +F ++ + +++ R I + +
Sbjct: 66 VTLQQLES---HSF-------------------YNLSKVTHIEIRNTRNLTYIDPDALKE 103
Query: 460 LPQLSSLLLGNNYIEGEIP--VQLCELKEVRLIDLSHNNLSGYIPA 503
LP L L + N ++ P ++ +++++ N IP
Sbjct: 104 LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 7e-15
Identities = 53/337 (15%), Positives = 98/337 (29%), Gaps = 43/337 (12%)
Query: 196 TNLETLLLANNSL----FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251
N L L G+F + L +++S+N I ++ + LP L ++
Sbjct: 30 RNAIELRFVLTKLRVIQKGAF----SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85
Query: 252 LSRNAFNGSIPSS-FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310
+ + I F ++ L+ L IS + +P+ +L + +N I
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144
Query: 311 FSKKF-NLT-NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSAL 368
F L+ + L L+ N + + + +L +N+L S
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204
Query: 369 EDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQ 428
+ +S + L L N TL
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKL------------------- 245
Query: 429 LESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVR 488
L+ L+Y + NW + +L + N V +
Sbjct: 246 --------VALMEASLTYPSHCCAFANWRRQISELHPI---CNKSILRQEVDYMTQARGQ 294
Query: 489 LIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWC 525
L+ +N S Y + T DY + C
Sbjct: 295 RSSLAEDNESSYSRGFDM-TYTEFDYDLCNEVVDVTC 330
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 37/245 (15%), Positives = 71/245 (28%), Gaps = 17/245 (6%)
Query: 235 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF 294
IP ++ ++L +F+ LE+++IS N + I + +
Sbjct: 23 EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 295 LLEILALSNNN----LQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLS 350
L + + N + F NL NL L + + L +
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136
Query: 351 DNHLSGRIP-RWLGNLSA-LEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
DN I LS + ++ N ++ F + NN +
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196
Query: 409 CFSPA-FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467
F A + +S+ +I + + L + +P + L L
Sbjct: 197 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEAS 252
Query: 468 LGNNY 472
L
Sbjct: 253 LTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 47/322 (14%), Positives = 80/322 (24%), Gaps = 103/322 (31%)
Query: 15 PSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQD 74
+ L T + F +LE++ + ++ +L I +
Sbjct: 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQN-----DVLEVIEADV--------- 74
Query: 75 SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWA 134
F L + I N+ I NL L+
Sbjct: 75 -----------FSNLPKLHEIR------IEKANNLLYINPEA--FQNLPNLQYLL----- 110
Query: 135 ETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVEN 194
+ + + + L++ N +E
Sbjct: 111 ---ISNT------GIKHLP------DVHK---------IHSLQKVLLDIQDNINIHTIER 146
Query: 195 NT------NLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM 248
N+ L L N I ++ + F G L
Sbjct: 147 NSFVGLSFESVILWLNKNG----------------IQEIHNSAFNG----------TQLD 180
Query: 249 DLNLSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ 307
+LNLS N +P+ F LDIS ++ +P L ++ A S NL+
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLEN--LKKLRARSTYNLK 237
Query: 308 G-HIFSKKFNLTNLMRLQLDGN 328
L LM L
Sbjct: 238 KLPTLE---KLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 36/271 (13%), Positives = 70/271 (25%), Gaps = 70/271 (25%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
L+ + +S + + N L E+ + + LL
Sbjct: 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI----EKANNLLY------------- 94
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
++ + F+ NL++L +SN +P + + D
Sbjct: 95 --------INPEAFQNLPNLQYLL-------ISNTGIKHLPDVH--KIHSLQKVLLD--- 134
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLV 192
N + +I +F + L+ + N
Sbjct: 135 -----IQDNI-----NIHTIE------RNSFVG---LSFESVILWLNKNGIQ-EIHNSAF 174
Query: 193 ENNTNLETLLLANNSL----FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM 248
E L NN+L F ILD+S+ +P L L
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASG----PVILDISRTRIH-SLPSYGLENLKKLR 229
Query: 249 DLNLSRNAFNGSIPSSFADMKMLERLDISYN 279
+ +P + + L ++Y
Sbjct: 230 ARSTYNLK---KLP-TLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 572 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 631
+K+T EIP+ + L L FS +E +++S N + I
Sbjct: 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 632 P----SQLTVLNTLAVFKVAYNNLSGKIPDRV 659
S L L+ + + K NNL I
Sbjct: 71 EADVFSNLPKLHEIRIEK--ANNLL-YINPEA 99
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 16/228 (7%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L G+ L+ +I + L L++ NQ+T ++ + L LS
Sbjct: 40 LDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSG 94
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG 363
N L+ S L ++ L L T +++ L+ L LYL N ++ P L
Sbjct: 95 NPLK--NVSAIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP--LA 148
Query: 364 NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKN 423
L+ L+ + + N + P+ L LT L +N I + S + +VHL N
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNN 205
Query: 424 KIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNN 471
+I S + ++ L + L+ + N L + + +
Sbjct: 206 QISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 43/207 (20%), Positives = 82/207 (39%), Gaps = 15/207 (7%)
Query: 296 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355
+A +N+ + +L + L G T I + L GL L DN ++
Sbjct: 21 AIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT 76
Query: 356 GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFI 415
P L NL+ + ++ +S N L+ I L + LDL++ I + + +
Sbjct: 77 DLAP--LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQI-TDVTPLAGLSNL 131
Query: 416 EQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEG 475
+ ++L N+I + + L L + + + + L +L++L +N I
Sbjct: 132 QVLYLDLNQIT-NISPLAG-LTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISD 187
Query: 476 EIPVQLCELKEVRLIDLSHNNLSGYIP 502
P L L + + L +N +S P
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP 212
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 49/313 (15%), Positives = 108/313 (34%), Gaps = 55/313 (17%)
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
L N +++ +N T ++ ++ + L ++ + L+ L + + +
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHD 435
N + P++ L +T L+LS N + + + I+ + L+ +I + +
Sbjct: 73 NQITDLAPLK--NLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITDV--TPLAG 127
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495
L L L N+ +I + L L L +GN + P L L ++ + N
Sbjct: 128 LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183
Query: 496 NLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTK 555
+S I +L E + + + + P+
Sbjct: 184 KISD-ISPLASLPNLIEVHLKNNQISDV------------------SPLAN--------- 215
Query: 556 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI-PTTFSNL 614
+++ + L+ +T + + Y + N+ I P T S+
Sbjct: 216 ----------TSNLFIVTLTNQTITNQ---PVFYNNNLVVPNVVKGPSGAPIAPATISDN 262
Query: 615 KQIESLDLSYNLL 627
S +L++NL
Sbjct: 263 GTYASPNLTWNLT 275
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 44/211 (20%), Positives = 74/211 (35%), Gaps = 20/211 (9%)
Query: 178 LSHLNLSGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQ 233
L L L N ++N T + L L+ N L I Q + LD++
Sbjct: 65 LIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQIT 120
Query: 234 GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGC 293
P+ L L L L N + S A + L+ L I Q++ P
Sbjct: 121 DVTPLA---GLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP---LANL 172
Query: 294 FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353
L L +N + S +L NL+ + L N + L+N L + L++
Sbjct: 173 SKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQT 228
Query: 354 LSGRIPRWLGNLSALEDIRMSNNNLEGPIPI 384
++ + + NL ++ + P I
Sbjct: 229 ITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 54/319 (16%), Positives = 99/319 (31%), Gaps = 64/319 (20%)
Query: 6 KVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFT 65
V+ +L + + +N T TV + + L + + + +
Sbjct: 10 NVIFPDPALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTT---IEGVQYLN 63
Query: 66 SLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKL 125
+L L ++D+ D KNL + +L LS N + ++ + L +
Sbjct: 64 NLIGLELKDNQIT------DLAPLKNLTKI----TELELSGN---PL-KNVSAIAGLQSI 109
Query: 126 KTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG 185
KT D Q+T ++ L N L L L
Sbjct: 110 KTLDL--------TST------QITDVT---------------PLAGLSN--LQVLYLDL 138
Query: 186 N----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIG 241
N + TNL+ L + N + S P+ + KL L N P+
Sbjct: 139 NQITNISP--LAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISDISPLA-- 192
Query: 242 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301
LP L++++L N S S A+ L + ++ +T + +
Sbjct: 193 -SLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249
Query: 302 SNNNLQGHIFSKKFNLTNL 320
S + S +
Sbjct: 250 SGAPIAPATISDNGTYASP 268
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 9e-14
Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 16/230 (6%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
+ NL + + + ++ ++++ + + + + + L L+
Sbjct: 23 FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 77
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG 363
N L I NL NL L LD N ++S SL + + L L L N +S I L
Sbjct: 78 NKLT-DIKPLA-NLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLV 131
Query: 364 NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKN 423
+L LE + + NN + + +L L L L +N I + ++ ++LSKN
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188
Query: 424 KIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYI 473
I L ++ L L+L N + L +++ + +
Sbjct: 189 HIS-DLRALAG-LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 24/220 (10%)
Query: 170 QHDLKNADLSHLNLSGNFPNWL--VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227
Q++L + + + + + + ++ N+ L L N L + P+ + + L L +
Sbjct: 42 QNELNS--IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKPLANLKNLGWLFL 97
Query: 228 SKNFFQGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIP 286
+N + + L L L+L N + I + + LE L + N++T +I
Sbjct: 98 DEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DIT 150
Query: 287 ERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISD--SLSNCRLL 344
+ L+ L+L +N + LT L L L N+ ISD +L+ + L
Sbjct: 151 VL--SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH----ISDLRALAGLKNL 202
Query: 345 AGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPI 384
L L + NL ++ ++ +L P I
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 53/304 (17%), Positives = 97/304 (31%), Gaps = 62/304 (20%)
Query: 36 LHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHL 95
F + L K + + S+ + +S K Q + N+ L
Sbjct: 20 DDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 73
Query: 96 DMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLS 155
L+ N ++ ++PL NL L N ++ +S
Sbjct: 74 F-------LNGN---KL-TDIKPLANLKNLGWLF--------LDEN------KVKDLS-- 106
Query: 156 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLETLLLANNSLFGS 211
DLK L L+L N + + LE+L L NN + +
Sbjct: 107 -------------SLKDLKK--LKSLSLEHNGISDING--LVHLPQLESLYLGNNKI--T 147
Query: 212 FRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 271
+ KL L + N +P+ L L +L LS+N + S + A +K L
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNLYLSKN--HISDLRALAGLKNL 202
Query: 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT 331
+ L++ + + + + + + I S + ++ FT
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP-NVKWHLPEFT 261
Query: 332 GEIS 335
E+S
Sbjct: 262 NEVS 265
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 66/278 (23%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
+ L S+ + + ++ Q + N+ +L L+ + L + +A+ +L
Sbjct: 39 AVTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTD---IKPLANLKNL 92
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
+L + ++ K D K+L+ L L L +N I + L +L +L++
Sbjct: 93 GWLFLDENKVK------DLSSLKDLKKLKS----LSLEHN---GI-SDINGLVHLPQLES 138
Query: 128 FDGEIWAETESHYNSVTPKFQLTSIS-LSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN 186
N ++T I+ LS L L L+L N
Sbjct: 139 LYL--------GNN------KITDITVLSR----------------LTK--LDTLSLEDN 166
Query: 187 ----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242
+ T L+ L L+ N + S + + L +L++ +
Sbjct: 167 QISDIVP--LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQ----ECLNKPIN 218
Query: 243 YLPGLMDLNLSRNAFNGSI-PSSFADMKMLERLDISYN 279
+ L+ N +N + P +D E+ ++ ++
Sbjct: 219 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 256
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 4e-13
Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 17/173 (9%)
Query: 258 NGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNL 317
+ + + A M L + ++ +T A ++ L ++N + ++ L
Sbjct: 33 SSTANITEAQMNSLTYITLANINVTDLTGIEYAHN---IKDLTINNIHATN--YNPISGL 87
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
+NL RL++ G + T + +LS L L +S + I + L + I +S N
Sbjct: 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
Query: 378 LEGPIPIEFCQLDYLTILDLSNNAI-----FGTLPSCFSPAFIEQVHLSKNKI 425
I L L L++ + + P + Q++ I
Sbjct: 148 AITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPK------LNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 6e-11
Identities = 33/183 (18%), Positives = 73/183 (39%), Gaps = 9/183 (4%)
Query: 295 LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354
L ++ + +L + L N T +++ + + L +++ H
Sbjct: 22 FKAYLNGLLGQSSTANITEA-QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA 78
Query: 355 SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP-A 413
+ P + LS LE +R+ ++ L LT+LD+S++A ++ + +
Sbjct: 79 TNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 414 FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYI 473
+ + LS N + + P L +L++ ++ H I P+L+ L + I
Sbjct: 137 KVNSIDLSYNGAITDIMPLKT-LPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193
Query: 474 EGE 476
G+
Sbjct: 194 GGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-09
Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 11/164 (6%)
Query: 172 DLKNADLSHLNLSGNFPNWL--VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSK 229
+ + L+++ L+ L +E N++ L + N PI L L +
Sbjct: 42 QMNS--LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMG 97
Query: 230 NFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERM 289
+ L L L++S +A + SI + + + +D+SYN +I
Sbjct: 98 KDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-- 154
Query: 290 ATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGE 333
L+ L + + + + + L +L G+
Sbjct: 155 LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 33/188 (17%), Positives = 72/188 (38%), Gaps = 33/188 (17%)
Query: 316 NLTNLMRLQLDGNNFTGEISDS-LSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374
+ L G + T I+++ +++ L + L++ +++ + ++D+ ++
Sbjct: 21 TFKAYLNGLL-GQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKDLTIN 74
Query: 375 NNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIH 434
N + PI L L L + + S L+
Sbjct: 75 NIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLS-------GLTS------------ 113
Query: 435 DSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSH 494
L LD+S++ SI IN LP+++S+ L N +I L L E++ +++
Sbjct: 114 ----LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQF 168
Query: 495 NNLSGYIP 502
+ + Y
Sbjct: 169 DGVHDYRG 176
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-08
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
L+++ + + +T + + LT + L++SH+ +I T + L ++ S+DLSYN
Sbjct: 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLS 652
I L L L + ++ +
Sbjct: 147 GAITDI-MPLKTLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
++ + ++ T P I L+ + L + ++T S L + LD+S++
Sbjct: 65 AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKI 655
I +++ L + ++YN I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 15/122 (12%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
I L +L+ L + + T + L T+L L + S S L+ I + +
Sbjct: 81 YNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSI-LTKINTLPKV 138
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
+ + + + + L+ L+ + + + + + KL
Sbjct: 139 NSIDLSYNGAITDIMP--LKTLPELKSLN-------IQFD---GV-HDYRGIEDFPKLNQ 185
Query: 128 FD 129
Sbjct: 186 LY 187
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 15/122 (12%)
Query: 8 LQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSL 67
L I ++K L ++ + T + +NLE L + D+ S + +++ TSL
Sbjct: 59 LTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSL 114
Query: 68 KYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
L + S A K L ++ + LS N I + PL L +LK+
Sbjct: 115 TLLDISHS----AHDDSILTKINTLPKVN----SIDLSYNG--AIT-DIMPLKTLPELKS 163
Query: 128 FD 129
+
Sbjct: 164 LN 165
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 56/203 (27%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKY 69
+ + SL + L+ N T + N+++L ++ + I+ ++L+
Sbjct: 39 TEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATN---YNPISGLSNLER 92
Query: 70 LSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPIS-LEPLFNLSKLKTF 128
L + + +L LD +S++ S L + L K+ +
Sbjct: 93 LRIMGKDVTS-DKIPNLSGLTSLTLLD-------ISHS---AHDDSILTKINTLPKVNSI 141
Query: 129 DGEIWAETESHYNSVTPKFQLTSIS-LSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN- 186
D YN +T I L L L LN+ +
Sbjct: 142 D--------LSYNG-----AITDIMPLKT----------------LPE--LKSLNIQFDG 170
Query: 187 ---FPNWLVENNTNLETLLLANN 206
+ +E+ L L +
Sbjct: 171 VHDYRG--IEDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
+ S++ I L+ +T ++ T I Y I L +++ + T P S L +E L +
Sbjct: 43 MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
+ L+ L +L + ++++ I
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNN 329
LD+S+N L+ E T L L LS+N+L I S+ F + NL L L N+
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99
Query: 330 FTGEISDSLSNCRLLAGLYLSDNHLSGRIPR-WLGNLSALEDIRMSNNNLEGPIPIE--- 385
S+ + L L L +NH+ + R +++ L+ + +S N + P+E
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIK 157
Query: 386 -FCQLDYLTILDLSNNAIFGTLPSCFSP 412
+L L +LDLS+N + +
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQK 185
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 54/201 (26%), Positives = 77/201 (38%), Gaps = 33/201 (16%)
Query: 277 SYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF--NLTNLMRLQLDGNNFTGEI 334
S QL +P+ + + +L LS+NNL + ++ LTNL L L N+
Sbjct: 26 SKQQLP-NVPQSLPSY---TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 335 SDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIE-FCQLDYLT 393
S++ L L LS NHL +L ALE + + NN++ + F + L
Sbjct: 81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQ 139
Query: 394 ILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGS 452
L LS N I S F + L K L+ LDLS N+
Sbjct: 140 KLYLSQNQI-----SRFPVELIKDGNKLPK----------------LMLLDLSSNKLKKL 178
Query: 453 IPNWINILPQLS--SLLLGNN 471
+ LP L L NN
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ ++ +DLS N L + + L + L L +N++ F ++ Q++ L LS
Sbjct: 87 VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 625 NLLHGKIP----SQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYE--GNPFLC 677
N + + P L L + ++ N L + + + ++ NP C
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQI--GYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLD 621
+ + + +DLS N L+ + + LT +H+L LSHN+L I + F + + LD
Sbjct: 37 LPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94
Query: 622 LSYNLLHGKIPSQ----LTVLNTLAVFKVAYNNLSGKIPDRV 659
LS N LH + L L L + N++ +
Sbjct: 95 LSSNHLH-TLDEFLFSDLQALEVL---LLYNNHIV-VVDRNA 131
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 392 LTILDLSNNAIFGTLPSCFSPA---FIEQVHLSKNKIEGQLESIIHDS-----PYLVTLD 443
+LDLS+N + L + ++P + + LS N + + I P L LD
Sbjct: 41 TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL-----NFISSEAFVPVPNLRYLD 94
Query: 444 LSYNRFHGSIPNWI-NILPQLSSLLLGNNYIEGEIPV-QLCELKEVRLIDLSHNNLS 498
LS N H ++ ++ + L L LLL NN+I + ++ +++ + LS N +S
Sbjct: 95 LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS 149
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 29/145 (20%)
Query: 148 QLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGN----FPNWLVENNTNLE 199
L S+ LS +I F + N L +L+LS N +L + LE
Sbjct: 65 NLHSLLLSHNHLNFISSEAF-------VPVPN--LRYLDLSSNHLHTLDEFLFSDLQALE 115
Query: 200 TLLLANNSLF----GSFRMPIHSYQKLAILDVSKNFFQGHIPVEI---GTYLPGLMDLNL 252
LLL NN + +F +L L +S+N PVE+ G LP LM L+L
Sbjct: 116 VLLLYNNHIVVVDRNAFE----DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL 170
Query: 253 SRNAFNGSIPSSFADMKMLERLDIS 277
S N + + + +
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLY 195
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 65/386 (16%), Positives = 119/386 (30%), Gaps = 100/386 (25%)
Query: 173 LKNADLSHLNLSGNFPNW--------LVENNTNLETLLLANNSL-------FGSFRMPIH 217
+ + +L + ++ + +++ ++L+ N++ I
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN---IA 57
Query: 218 SYQKLAILDVSKNFFQGHIPVEIGTYL----------PGLMDLNLSRNAFNGSIPSSFAD 267
S + L I + S F G + EI L P L + LS NAF + D
Sbjct: 58 SKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116
Query: 268 M----KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRL 323
LE L + N L + ++A AL + K N L +
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIAR--------ALQEL----AVNKKAKNAPPLRSI 164
Query: 324 QLDGNNFTGE----ISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLE 379
N + + + RLL + + N + G L +
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE-----GIEHLLLEGLAYCQE-- 217
Query: 380 GPIPIEFCQLDYLTILDLSNN--------AIFGTLPSCFSPAFIEQVHLSKNKIEGQ--- 428
L +LDL +N A+ L S + + ++ L+ + +
Sbjct: 218 ------------LKVLDLQDNTFTHLGSSALAIALKSWPN---LRELGLNDCLLSARGAA 262
Query: 429 -----LESIIHDSPYLVTLDLSYNRFHG----SIPNWI-NILPQLSSLLLGNNYI--EGE 476
+ + L TL L YN ++ I +P L L L N E +
Sbjct: 263 AVVDAFSKLENIG--LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320
Query: 477 IPVQLCELKEVR----LIDLSHNNLS 498
+ ++ E+ R L +L
Sbjct: 321 VVDEIREVFSTRGRGELDELDDMEEL 346
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ-- 307
L+L N + +F + L L ++ N+L +P + LE L +++N LQ
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 308 -GHIFSKKFNLTNLMRLQLDGNNFTGEIS----DSLSNCRLLAGLYLSDNHLSGRIPRWL 362
+F L NL L+LD N + DSL+ L L L N L +P+ +
Sbjct: 101 PIGVFD---QLVNLAELRLDRNQLK-SLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGV 152
Query: 363 -GNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHL 420
L++L+++R+ NN L+ F +L L L L NN + F ++ + L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 421 SKN 423
+N
Sbjct: 213 QEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 20/197 (10%)
Query: 260 SIPSS-FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ---GHIFSKKF 315
+IPS+ AD ++LD+ N+L+ +P + L +L L++N LQ IF +
Sbjct: 30 AIPSNIPAD---TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-- 83
Query: 316 NLTNLMRLQLDGNNFT---GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIR 372
L NL L + N + D L N LA L L N L PR +L+ L +
Sbjct: 84 -LKNLETLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 373 MSNNNLEGPIPIE-FCQLDYLTILDLSNNAIFGTLPSCFSP-AFIEQVHLSKNKIEGQLE 430
+ N L+ +P F +L L L L NN + F ++ + L N+++ E
Sbjct: 140 LGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 431 SIIHDSPYLVTLDLSYN 447
L L L N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 23/190 (12%)
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWL-GNLSALEDIRMSNN 376
+ +L L N + S + L LYL+DN L +P + L LE + +++N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95
Query: 377 NLEGPIPIE-FCQLDYLTILDLSNNAIFGTLPSCFSPAF-----IEQVHLSKNKIEGQLE 430
L+ +PI F QL L L L N + +LP F + + L N +L+
Sbjct: 96 KLQA-LPIGVFDQLVNLAELRLDRNQL-KSLP---PRVFDSLTKLTYLSLGYN----ELQ 146
Query: 431 SIIHDS----PYLVTLDLSYNRFHGSIPNWI-NILPQLSSLLLGNNYIEGEIPVQLCELK 485
S+ L L L N+ +P + L +L +L L NN ++ L+
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Query: 486 EVRLIDLSHN 495
+++++ L N
Sbjct: 206 KLKMLQLQEN 215
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 14/183 (7%)
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
L N ++ L + T ++ S + ++++ + + L+++ +S+
Sbjct: 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHD 435
N + P++ L L L ++ N + + A + ++ L N++ +S+IH
Sbjct: 73 NQISDLSPLK--DLTKLEELSVNRNRL--KNLNGIPSACLSRLFLDNNELR-DTDSLIH- 126
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495
L L + N+ SI + L +L L L N I L LK+V IDL+
Sbjct: 127 LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182
Query: 496 NLS 498
Sbjct: 183 KCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 5e-09
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303
L + NL + + + S ++ ++ + + + + L+ L LS+
Sbjct: 18 LANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSH 72
Query: 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG 363
N + S +LT L L ++ N ++ + + L L+L +N L L
Sbjct: 73 NQI--SDLSPLKDLTKLEELSVNRNRLK-NLN-GIPSACLSR-LFLDNNELRDTDS--LI 125
Query: 364 NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402
+L LE + + NN L+ + + L L +LDL N I
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEI 162
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 44/212 (20%), Positives = 70/212 (33%), Gaps = 19/212 (8%)
Query: 170 QHDLKNADLSHLNLSGNFPNWL--VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227
Q +L + + N + L ++ TNL+ L L++N + S P+ KL L V
Sbjct: 37 QKELSG--VQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSV 92
Query: 228 SKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPE 287
++N + G L L L N S +K LE L I N+L I
Sbjct: 93 NRN----RLKNLNGIPSACLSRLFLDNN--ELRDTDSLIHLKNLEILSIRNNKLK-SIVM 145
Query: 288 RMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347
LE+L L N + L + + L G E + +
Sbjct: 146 --LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201
Query: 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLE 379
D P ++ N + D +
Sbjct: 202 KDPDGRWIS--PYYISNGGSYVDGCVLWELPV 231
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ-- 307
+ L +N P +F+ K L R+D+S NQ++ E+ G L L L N +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 308 -GHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLS 366
+F L +L L L+ N D+ + L L L DN L L
Sbjct: 96 PKSLFEG---LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 367 ALEDIRMSNN 376
A++ + ++ N
Sbjct: 153 AIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 196 TNLETLLLANNSL----FGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251
+ + L N++ G+F Y+KL +D+S N + + L L L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAF----SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLV 86
Query: 252 LSRNAFNGSIPSS-FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310
L N +P S F + L+ L ++ N++ + L +L+L +N LQ
Sbjct: 87 LYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIA 144
Query: 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351
L + + L N F +C L +L+D
Sbjct: 145 KGTFSPLRAIQTMHLAQNPFI-------CDCHL---KWLAD 175
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 33/159 (20%)
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
+ ++L+ N + S + L + LS+N +S P L +L + + N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 378 LEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS- 436
+ F L L +L L+ N ++ + D+
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNAN---------------------------KINCLRVDAF 124
Query: 437 ---PYLVTLDLSYNRFHGSIPNWI-NILPQLSSLLLGNN 471
L L L N+ +I + L + ++ L N
Sbjct: 125 QDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
L S++ + L NK+T E+P + L + L L+ N + F +L + L L
Sbjct: 79 LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137
Query: 625 NLLH 628
N L
Sbjct: 138 NKLQ 141
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 1e-10
Identities = 51/328 (15%), Positives = 102/328 (31%), Gaps = 18/328 (5%)
Query: 78 KGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETE 137
+ L + H+ L + + + + L + E
Sbjct: 233 RWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDG 292
Query: 138 SHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTN 197
+ S L + SL+ + P+ + + L + P ++
Sbjct: 293 RNRPSHVWLCDLPAASLNDQL-----PQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347
Query: 198 LETLLLANNSLFGSFRMP--IHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255
E L S+ S + + S ++L L+ + + I + L L +
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL----LTIILLMRALDPLLYEKE 403
Query: 256 AFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF 315
D LD ++ E + +L L++ +L +
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDL--TVLCHLE 460
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
L + L L N + +L+ R L L SDN L + + NL L+++ + N
Sbjct: 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCN 517
Query: 376 NNLEG-PIPIEFCQLDYLTILDLSNNAI 402
N L+ L +L+L N++
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 1e-08
Identities = 40/300 (13%), Positives = 84/300 (28%), Gaps = 16/300 (5%)
Query: 33 NQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNL 92
++ L + + L+L + +S + ++ + D F+ +
Sbjct: 262 SRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVI 321
Query: 93 EHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSI 152
+ +L + L + + + + +L +
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSE----LESCKELQEL 377
Query: 153 SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSF 212
T + L F + L +
Sbjct: 378 EPENKWCLLTIILLMRALDPLLY----EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433
Query: 213 RMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 272
+ Y + +L ++ + L + L+LS N ++P + A ++ LE
Sbjct: 434 SVLKMEYADVRVLHLAHK---DLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489
Query: 273 RLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFT 331
L S N L + L+ L L NN LQ + + L+ L L GN+
Sbjct: 490 VLQASDNALE-NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 1e-06
Identities = 48/318 (15%), Positives = 87/318 (27%), Gaps = 19/318 (5%)
Query: 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTL 406
L ++ H + L + + +D +
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295
Query: 407 PSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSL 466
PS + L+ + I S L +R + QL
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRC 354
Query: 467 LLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSI--- 523
L + +L KE L +L N + L+ +L +E+
Sbjct: 355 ELSVEKST-VLQSELESCKE--LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411
Query: 524 ------WCDRASVYGSPCLPTQ--SGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLS 575
S L + K+++ L ++ +DLS
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLS 471
Query: 576 CNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG-KIPSQ 634
N+L +P + L + L S N L + +NL +++ L L N L
Sbjct: 472 HNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQP 528
Query: 635 LTVLNTLAVFKVAYNNLS 652
L L + + N+L
Sbjct: 529 LVSCPRLVLLNLQGNSLC 546
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 13/134 (9%)
Query: 225 LDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGE 284
L ++ N F I LP L +N S N +F + + ++ N+L
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95
Query: 285 IPERMATGCFLLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNNFT---GEISDSL 338
+ +M G L+ L L +N + F L+++ L L N T D+L
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 339 SNCRLLAGLYLSDN 352
+ L+ L L N
Sbjct: 153 HS---LSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 10/134 (7%)
Query: 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFN-LTNLMRLQLDGNNF 330
L ++ N+ T + L + SNN + I F + + + L N
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93
Query: 331 T---GEISDSLSNCRLLAGLYLSDNHLSGRIPRWL-GNLSALEDIRMSNNNLEGPIPIEF 386
++ L + L L L N ++ + LS++ + + +N + P F
Sbjct: 94 ENVQHKMFKGLES---LKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149
Query: 387 CQLDYLTILDLSNN 400
L L+ L+L N
Sbjct: 150 DTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 45/182 (24%)
Query: 172 DLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNF 231
L N + + L +G F + L + +NN + + +
Sbjct: 38 RLNNNEFTVLEATGIF-----KKLPQLRKINFSNNKI-----------TDI-----EEGA 76
Query: 232 FQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS-FADMKMLERLDISYNQLTGEIPERMA 290
F+G G+ ++ L+ N ++ F ++ L+ L + N++T +
Sbjct: 77 FEG---------ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSF 125
Query: 291 TGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYL 349
G + +L+L +N + + F L +L L L N F NC L +L
Sbjct: 126 IGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN-------CNCYL---AWL 174
Query: 350 SD 351
+
Sbjct: 175 GE 176
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 18/125 (14%)
Query: 297 EILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEIS----DSLSNCRLLAGLYLSD 351
L L+NN + F L L ++ N T +I + S + + L+
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG---VNEILLTS 90
Query: 352 NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIE-FCQLDYLTILDLSNNAI-------F 403
N L + L +L+ + + +N + + + F L + +L L +N I F
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149
Query: 404 GTLPS 408
TL S
Sbjct: 150 DTLHS 154
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 43/277 (15%), Positives = 81/277 (29%), Gaps = 48/277 (17%)
Query: 175 NADLSHLNLSGN---------FPNWLVENNTNLETLLLANNSLFGS-----FRMPIHSYQ 220
A ++ LNLSGN L N+ +L L+ N L +
Sbjct: 50 PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF 109
Query: 221 KLAILDVSKNFFQGHIPVEIGTYL----PGLMDLNLSRNAFNGSIPSSFADM-----KML 271
+ +LD+ N F E + LNL N + +
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169
Query: 272 ERLDISYNQLTGE----IPERMATGCFLLEILALSNNNLQ---GHIFSK--KFNLTNLMR 322
L++ N L + + + +A+ + L LS N L + +++
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229
Query: 323 LQLDGNNFTGE----ISDSLSNCRLLAGLYLSDNHLSG-------RIPRWLGNLSALEDI 371
L L N G + + + L +YL + + + N+ + +
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289
Query: 372 RMSNNNLEGPIPIEFCQL-----DYLTILDLSNNAIF 403
+ + I L + L N +
Sbjct: 290 DKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLI 326
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 8e-09
Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 50/277 (18%)
Query: 175 NADLSHLNLSGN---------FPNWLVENNTNLETLLLANNSLFGS-----FRMPIHSYQ 220
++ L+LS N ++ +L L+ NSL ++
Sbjct: 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80
Query: 221 KLAILDVSKNFFQGHIPVEIGTYLPG----LMDLNLSRNAFNGSIPSSFADM-----KML 271
+ L++S NF E+ L + L+L N F+ S F +
Sbjct: 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140
Query: 272 ERLDISYNQLTGE----IPERMATGCFLLEILALSNNNLQ----GHIFS--KKFNLTNLM 321
L++ N L + + + +A + L L NNL + ++
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP-ASVT 199
Query: 322 RLQLDGNNFTGE----ISDSL-SNCRLLAGLYLSDNHLSG----RIPRWLGNLSALEDIR 372
L L N + ++ S + L L N L G + +L L+ +
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259
Query: 373 MSNNNLEGPIPIE-------FCQLDYLTILDLSNNAI 402
+ + ++ + F + + ++D + I
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 36/261 (13%), Positives = 75/261 (28%), Gaps = 47/261 (18%)
Query: 175 NADLSHLNLSGN---------FPNWLVENNTNLETLLLANNSLFGS-----FRMPIHSYQ 220
++ L+L N F ++ +L L N L ++
Sbjct: 108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167
Query: 221 KLAILDVSKNFFQGHIPVEIGTYLPG----LMDLNLSRNAFNGSIPSSFADM-----KML 271
+ L++ N E+ +L + L+LS N + A + +
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227
Query: 272 ERLDISYNQLTGEIPERMATG---CFLLEILALSNNNLQG-------HIFSKKFNLTNLM 321
L++ N L G E + L+ + L + ++ + + N+ ++
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Query: 322 RLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGP 381
+ +G S +SN L N + + N +
Sbjct: 288 LVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL--------NQCLIFAQKHQTNIEDLN 339
Query: 382 IPIEFCQLDYLTILDLSNNAI 402
IP E L + +
Sbjct: 340 IPDE------LRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 35/211 (16%)
Query: 321 MRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG-----NLSALEDIRMSN 375
M +L + + + + S + L LS N+L L +++ + +S
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 376 NNLEGPIPIEFCQL-----DYLTILDLSNN--------AIFGTLPSCFSPAFIEQVHLSK 422
N+L E Q+ +T L+LS N + TL + P I + L
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI--PFTITVLDLGW 118
Query: 423 NKIEGQ-----LESIIHDSPYLVTLDLSYNRFHGSIPNWI-----NILPQLSSLLLGNNY 472
N + ++ + + +L+L N + + I ++SL L N
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178
Query: 473 IEGEIPVQLCE-LKEV----RLIDLSHNNLS 498
+ + +L + L + +DLS N L
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLG 209
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 19/160 (11%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ-- 307
L+L ++F + L L++ YNQL + + L L L+NN L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASL 98
Query: 308 -GHIFSKKFNLTNLMRLQLDGNNFTG---EISDSLSNCRLLAGLYLSDNHLSGRIPRWLG 363
+F LT L +L L GN + D L+ L L L+ N L IP G
Sbjct: 99 PLGVFDH---LTQLDKLYLGGNQLKSLPSGVFDRLTK---LKELRLNTNQLQ-SIPA--G 149
Query: 364 ---NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNN 400
L+ L+ + +S N L+ F +L L + L N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 49/179 (27%), Positives = 65/179 (36%), Gaps = 41/179 (22%)
Query: 178 LSHLNLSGN----FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQ 233
L+ LNL N + ++ T L TL LANN L L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-----------ASL----------- 98
Query: 234 GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS-FADMKMLERLDISYNQLTGEIPERMATG 292
P+ + +L L L L N S+PS F + L+ L ++ NQL IP
Sbjct: 99 ---PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153
Query: 293 CFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351
L+ L+LS N LQ L L + L GN F + LYLS
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEI---------LYLSQ 203
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 6e-09
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 243 YLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301
L +L + + + L L I + L + L L L
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL 87
Query: 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFT 331
S N L+ + K +L L L GN
Sbjct: 88 SFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 1e-06
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 3/107 (2%)
Query: 573 DLSC-NKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGK 630
L C + + + L + + + L ++ +L + + L
Sbjct: 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71
Query: 631 IPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677
P L+ +++N L + + Q + +E GNP C
Sbjct: 72 APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 3e-06
Identities = 21/98 (21%), Positives = 27/98 (27%), Gaps = 7/98 (7%)
Query: 260 SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNL---QGHIFSKKFN 316
+ L L I Q + R G L L + + L F
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78
Query: 317 LTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354
L RL L N ++ L L LS N L
Sbjct: 79 TPRLSRLNLSFNALESLSWKTVQGLSLQ-ELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 6e-06
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 347 LYLSDNHLSGRIPRW-LGNLSALEDIRMSNNNLEGPIPIE-FCQLDYLTILDLSNNAIFG 404
LY+ + + L L L ++ + + L + + F L+ L+LS NA+
Sbjct: 36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALES 94
Query: 405 TLPSCFSPAFIEQVHLSKN 423
++++ LS N
Sbjct: 95 LSWKTVQGLSLQELVLSGN 113
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 296 LEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354
L L + N H+ + L L L + + D+ L+ L LS N L
Sbjct: 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92
Query: 355 SGRIPRWLGNLSALEDIRMSNNNL 378
+ + LS L+++ +S N L
Sbjct: 93 ESLSWKTVQGLS-LQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 32/150 (21%)
Query: 357 RIPRWLGNLSALEDIRMSNNNLEGPIPIE-FCQLDYLTILDLSNNAIFGTLPSCFSP-AF 414
L L ++ + N + + L L L + + + +P AF
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-----RFVAPDAF 76
Query: 415 IEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIE 474
H +P L L+LS+N + L L L+L N +
Sbjct: 77 -------------------HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL- 115
Query: 475 GEIPVQLCELKEVRLIDLSHNNLSGYIPAC 504
C L+ ++ +
Sbjct: 116 ----HCSCALRWLQRWEEEGLGGVPEQKLQ 141
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 1e-04
Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQ-IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+++ + + + + + + L + L + + L P F ++ L+LS+
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89
Query: 625 NLLH 628
N L
Sbjct: 90 NALE 93
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 8e-04
Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 33/119 (27%)
Query: 7 VLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTS 66
L + +L LY+ + ++L L L + KS L +A
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG------LRFVAPDA- 75
Query: 67 LKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKL 125
F L L+ LS N + +L +L
Sbjct: 76 -------------------FHFTPRLSRLN-------LSFNALESLSWKTVQGLSLQEL 108
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 66/422 (15%), Positives = 133/422 (31%), Gaps = 69/422 (16%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIAS-FTSLKYLS 71
S L+ + L T + +F N + L+L + + L++IA+ +LK L
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162
Query: 72 MQDSVFKGALHGQDFRKF----KNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKT 127
+++S + G F +L L++ + +S + +LE L
Sbjct: 163 LRESDVDD-VSGHWLSHFPDTYTSLVSLNISCLASEVSFS-------ALERLVTRCP--- 211
Query: 128 FDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNF 187
L S+ L+ + L L+
Sbjct: 212 --------------------NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251
Query: 188 PNW-----LVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242
+ + L L +++ +L L++S Q + V++
Sbjct: 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311
Query: 243 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISY---------NQLTGEIPERMATGC 293
P L L + + + + K L L + LT + ++ GC
Sbjct: 312 QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371
Query: 294 FLLEILALSNNNLQGHIFSK-KFNLTNLMRLQLDG------NNFTGEISDS-----LSNC 341
LE + + N N+ R +L + T E D + +C
Sbjct: 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431
Query: 342 RLLAGLYLSDNHLSGRIPRWLG-NLSALEDIRMSNNNL--EGPIPI-EFCQLDYLTILDL 397
+ L L LS L+ ++ ++G +E + ++ G + C L L++
Sbjct: 432 KDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD--SLRKLEI 488
Query: 398 SN 399
+
Sbjct: 489 RD 490
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 61/492 (12%), Positives = 147/492 (29%), Gaps = 63/492 (12%)
Query: 36 LHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHL 95
+ F + + L F + + + LE +
Sbjct: 62 IRRFPKVRSV-----------ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI 110
Query: 96 DMGWVQLILSNNHFFQIPISLEPL--FNLSKLKTFDGEIWAETESHYNSVTPKF-QLTSI 152
+ + + +++ I S + LS + F + ++ L +
Sbjct: 111 RLKRMVV--TDDCLELIAKSFKNFKVLVLSSCEGF-------STDGLAAIAATCRNLKEL 161
Query: 153 SLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNW-------LVENNTNLETLLLA 204
L +D + + + L LN+S LV NL++L L
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTS--LVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219
Query: 205 NNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIG-----TYLPGLMDLNLSRNAFNG 259
+ +L L + V G + L L+ +A
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279
Query: 260 SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTN 319
+P+ ++ L L++SY + ++ C L+ L + + + +
Sbjct: 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339
Query: 320 LMRLQLDGNNFTGE-----ISDS-----LSNCRLLAGLYLSDNHLSGRIPRWLG-NLSAL 368
L L++ + +++ C L + ++ + N +
Sbjct: 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM 399
Query: 369 EDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQ 428
R+ + P + L LD+ AI + ++ LS +
Sbjct: 400 TRFRLCIIEPKAPDYLT------LEPLDIGFGAIVEHCKD------LRRLSLSGLLTDKV 447
Query: 429 LESIIHDSPYLVTLDLSYNRFHG-SIPNWINILPQLSSLLLGN-NYIEGEIPVQLCELKE 486
E I + + L +++ + + ++ L L + + + + + +L+
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507
Query: 487 VRLIDLSHNNLS 498
+R + +S ++S
Sbjct: 508 MRSLWMSSCSVS 519
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 16/136 (11%)
Query: 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ----GHIFSKKFNLTNLMRLQLDG 327
+ L + NQ+T ++ + L+ L L +N L G +F LT L L L
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVG-VFDS---LTQLTVLDLGT 97
Query: 328 NNFTG---EISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPI 384
N T + D L + L L++ N L+ +PR + L+ L + + N L+
Sbjct: 98 NQLTVLPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153
Query: 385 EFCQLDYLTILDLSNN 400
F +L LT L N
Sbjct: 154 AFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 7e-07
Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLT---GEIPERMATGCFLLEILALSNNNL 306
L L N P F + L+ L + NQL + + + L +L L N L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ----LTVLDLGTNQL 100
Query: 307 Q----GHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRW- 361
+F + L +L L + N T E+ + L L L N L IP
Sbjct: 101 TVLPSA-VFDR---LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGA 154
Query: 362 LGNLSALEDIRMSNN 376
LS+L + N
Sbjct: 155 FDRLSSLTHAYLFGN 169
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
N L L G I + + + SDN + ++ L L+ + ++N
Sbjct: 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAI 402
N + L LT L L+NN++
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSL 100
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 29/148 (19%)
Query: 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
L+ + + + N ++ + + I LD +D S+N I
Sbjct: 4 LTAELIE-QAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI------ 54
Query: 409 CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLL 468
K++G L TL ++ NR LP L+ L+L
Sbjct: 55 --------------RKLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95
Query: 469 GNNYIEGEIPVQ-LCELKEVRLIDLSHN 495
NN + + L LK + + + N
Sbjct: 96 TNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 32/194 (16%)
Query: 196 TNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY--LPGLMDLNLS 253
+++ ++ N+ + I + L + N +I L L L L+
Sbjct: 41 NSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILT 93
Query: 254 RNAFNGSIPSS-FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ----G 308
N S+P+ F + L+ L + NQL +P+ + L L L++N LQ G
Sbjct: 94 GNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151
Query: 309 HIFSKKFNLTNLMRLQLDGNNFT---GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG-- 363
+F K LTNL L L N + D L+ L L L N L +P G
Sbjct: 152 -VFDK---LTNLTELDLSYNQLQSLPEGVFDKLTQ---LKDLRLYQNQLK-SVPD--GVF 201
Query: 364 -NLSALEDIRMSNN 376
L++L+ I + +N
Sbjct: 202 DRLTSLQYIWLHDN 215
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 15/134 (11%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG- 308
L+L N+ F ++ L +L + N+L +P + L L LS N LQ
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 309 --HIFSKKFNLTNLMRLQLDGNNFT---GEISDSLSNCRLLAGLYLSDNHLSGRIPR-WL 362
+F K LT L L L+ N + D L+ L L L N L +P
Sbjct: 92 PNGVFDK---LTQLKELALNTNQLQSLPDGVFDKLTQ---LKDLRLYQNQLK-SVPDGVF 144
Query: 363 GNLSALEDIRMSNN 376
L++L+ I + +N
Sbjct: 145 DRLTSLQYIWLHDN 158
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 22/170 (12%)
Query: 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRI 358
L ++ + + L L L NN +I SLS L L L N + +I
Sbjct: 30 LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI 85
Query: 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI--FGTLPSCFSPAFIE 416
LE++ +S N + IE +L L +L +SNN I +G + + +E
Sbjct: 86 ENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 417 QVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSL 466
+ L+ N + + S Y + + + LP L L
Sbjct: 144 DLLLAGNPLYNDYKENNATSEYRIEV--------------VKRLPNLKKL 179
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 37/140 (26%)
Query: 364 NLSALEDIRMSN--NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLS 421
+ E + + +E + L L LS N I
Sbjct: 21 VATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNI------------------- 60
Query: 422 KNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYI---EGEIP 478
KI L + + L L L N I N + L L + N I G
Sbjct: 61 -EKISS-LSGMEN----LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG--- 110
Query: 479 VQLCELKEVRLIDLSHNNLS 498
+ +L +R++ +S+N ++
Sbjct: 111 --IEKLVNLRVLYMSNNKIT 128
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 22/178 (12%)
Query: 247 LMDLNLSRNAFNGSIPSSFADM-----KMLERLDISYNQLTGEIPERMATGCFLLEILAL 301
L LNL+ + A + L+ ++++ QL + L L
Sbjct: 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL 133
Query: 302 SNNNLQ---GHIFSK--KFNLTNLMRLQLDGNNFTGE----ISDSLSNCRLLAGLYLSDN 352
N+L + + L+L N T + + L+ + L L
Sbjct: 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193
Query: 353 HLSGR----IPRWLGNLSALEDIRMSNNNLEGPIPIEFCQL----DYLTILDLSNNAI 402
L + L L+++ ++ N + + L +L L N +
Sbjct: 194 GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 44/326 (13%), Positives = 88/326 (26%), Gaps = 77/326 (23%)
Query: 201 LLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGS 260
L N ++ PI + L K + LP L+ +
Sbjct: 7 LSAHNRAVLAQLGCPIKNLDALENAQAIKK----KLGKLGRQVLPPSELLDHLFFHYEFQ 62
Query: 261 IPSSFAD-MKMLERLDISYNQLTGEIPERMATGCFLL-EILALSNNNLQGHIFSKKFNLT 318
A+ + L +L+++ ++T C ++ +L + L
Sbjct: 63 NQRFSAEVLSSLRQLNLAGVRMTPV-------KCTVVAAVLGSGRHALD----------- 104
Query: 319 NLMRLQLDGNNFTGE----ISDSLSNCRLLAGLYLSDNHLSGRIPRWLG-----NLSALE 369
+ L + R L L N L + L + +
Sbjct: 105 ---EVNLASCQLDPAGLRTLLPVFLRARKL---GLQLNSLGPEACKDLRDLLLHDQCQIT 158
Query: 370 DIRMSNNNL--EGPIPIEFCQL--------DYLTILDLSNN--------AIFGTLPSCFS 411
+R+SNN L G + +T L L + + L
Sbjct: 159 TLRLSNNPLTAAG------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212
Query: 412 PAFIEQVHLSKNKIEGQ----LESIIHDSPYLVTLDLSYNRFHGSIPNWI-------NIL 460
+++++++ N L + P L L L +N +
Sbjct: 213 ---LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGG 269
Query: 461 PQLSSLLLGNNYIEGEIPVQLCELKE 486
++ L + V L E++
Sbjct: 270 ARVVVSLTEGTAVSEYWSVILSEVQR 295
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-06
Identities = 82/551 (14%), Positives = 151/551 (27%), Gaps = 148/551 (26%)
Query: 32 VNQELHNFTNLEELILD--KSDL---HVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDF 86
+ + + ++ + D + V + SI S + ++ M G L
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 87 RKFKNLEHLDMGWVQLILSNNH-FFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTP 145
K E + +V+ +L N+ F PI E + + ++ E +
Sbjct: 71 LLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQ-----RQPSMMTRMYIEQRDRLYNDNQ 124
Query: 146 KFQ----------------LTSISLSGYI----DGGTFPKFLYHQHDLKNADLSHLNLSG 185
F L + + + G K + +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-SGK-----TWVALDVCLSYKVQC 178
Query: 186 NFPN---WLVENNTNLETLLLAN-NSLFGSFRMPIHSYQ------KLAILDVS---KNFF 232
WL N N +L L S KL I + +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 233 QGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM--KML------ERLDISYNQLTGE 284
+ Y L+ L N N ++F ++ K+L + D T
Sbjct: 239 KSK------PYENCLLVL---LNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 285 IPERMATGCFLL-EILALSNNNLQGHIFSKKFNL--TNLMRLQLDGNNFTGEISDSLSNC 341
I + E+ +L K + +L R L N +S
Sbjct: 289 ISLDHHSMTLTPDEVKSL---------LLKYLDCRPQDLPREVLTTNPRR--LS------ 331
Query: 342 RLLAGLYLSDNHLSGRIPRWLG-NLSALED-IRMSNNNLEGPIPIEFCQL-DYLTILDLS 398
+ + D W N L I S N LE P E+ ++ D L++ S
Sbjct: 332 --IIAESIRDGL--ATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPS 384
Query: 399 NNAIFGTLPSCFSPAFIEQVHLS---KNKIEGQLESII-----------HDSPYLVTLDL 444
+ +P + LS + I+ + ++ +++
Sbjct: 385 AH-----IP--------TIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 445 SYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPAC 504
Y + N L ++ ++Y IP DL L Y
Sbjct: 431 IYLELKVKLEN----EYALHRSIV-DHY---NIPKTFD------SDDLIPPYLDQYF--- 473
Query: 505 LVYTSLGEDYH 515
Y+ +G +H
Sbjct: 474 --YSHIG--HH 480
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 82/570 (14%), Positives = 146/570 (25%), Gaps = 212/570 (37%)
Query: 217 HSYQKLA---------------ILDVSKNFFQG----HI----PVEIGTYLPGLMDLNLS 253
+ Y+ + + D+ K+ HI GT L LS
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR--LFWTLLS 73
Query: 254 RNAFNGSIPSSFADMKMLERLDISYNQLTGEIPER-----MATGCFLLEILALSNNNLQG 308
+ + F + E L I+Y L I M T ++ + L N+N
Sbjct: 74 KQE---EMVQKFVE----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--- 123
Query: 309 HIFSKKF--------NLTN-LMRLQ------LDGNNFTGEISDSLSNCRLLAGLYLSDNH 353
+F+K L L+ L+ +DG +G+ +A
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--------VALDVCLSYK 175
Query: 354 LSGRIPR---WL--GNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
+ ++ WL N ++ E + L I + D S+N
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR-----SDHSSNIK------ 224
Query: 409 CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL- 467
L + I+ +L ++ PY N LL
Sbjct: 225 -----------LRIHSIQAELRRLLKSKPY---------------EN---------CLLV 249
Query: 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPAC--LVYTSLGEDYHEEGPPTSIWC 525
L N + K +LS C L+ T +
Sbjct: 250 LLN----------VQNAKAWNAFNLS----------CKILLTTR---F-------KQVTD 279
Query: 526 DRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI-- 583
++ + + +E K +D L E+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKY---------------LDCRPQDLPREVLT 324
Query: 584 --P---TQIGYLTRIHA------LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL----- 627
P + I R +++ + LT I ++ + L+ E + ++ L
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPP 383
Query: 628 HGKIPSQL--------------TVLNTLAVFKVA---YNNLSGKIPDRVAQFSTFEE--- 667
IP+ L V+N L + + + IP +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLEN 441
Query: 668 ---------DSYEGNPFLCGWPLSKSCDDN 688
D Y L D
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF----LLEILALSNNN 305
L L N F +P ++ K L +D+S N+++ + F L L LS N
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSN----QSFSNMTQLLTLILSYNR 89
Query: 306 LQ---GHIFSKKFNLTNLMRLQLDGN 328
L+ F L +L L L GN
Sbjct: 90 LRCIPPRTFDG---LKSLRLLSLHGN 112
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 562 QGRILTSM-SGI-------DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSN 613
+ L + GI L N+ T +P ++ + ++LS+N ++ +FSN
Sbjct: 18 SNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76
Query: 614 LKQIESLDLSYNLLHGKIPS----QLTVLNTL 641
+ Q+ +L LSYN L IP L L L
Sbjct: 77 MTQLLTLILSYNRLRC-IPPRTFDGLKSLRLL 107
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 316 NLTNLMRLQLDGNNFT-GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374
+++ L LD + G++ L L + L+ I L L+ L+ + +S
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72
Query: 375 NNNLEGPIPIEFCQLDYLTILDLSNNAI 402
+N + G + + + LT L+LS N I
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 30/142 (21%)
Query: 364 NLSALEDIRMSNN-NLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSK 422
S ++++ + N+ + EG + + + L L N +
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-------------------- 54
Query: 423 NKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEG-EIPVQL 481
I + L L+LS NR G + P L+ L L N I+ L
Sbjct: 55 TSIAN-----LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109
Query: 482 CELKEVRLIDLSHN---NLSGY 500
+L+ ++ +DL + NL+ Y
Sbjct: 110 KKLENLKSLDLFNCEVTNLNDY 131
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
Query: 249 DLNLSRNAFN-GSIPSSFADMKMLERLDISYNQLT--GEIPERMATGCFLLEILALSNNN 305
+L L + N G + + + LE L LT +P+ L+ L LS+N
Sbjct: 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK-----LNKLKKLELSDNR 75
Query: 306 LQGHIFSKKFNLTNLMRLQLDGNNFTG-EISDSLSNCRLLAGLYLSDN 352
+ G + NL L L GN + L L L L +
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 17/186 (9%)
Query: 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISY-NQLTGEIPERMATGCFLLE 297
I + L +L+L + I ++ A L RL++S + + + + + C L+
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171
Query: 298 ILALSNNNL---QGHIFSKKFNLTNLMRLQLDGNNFTGEISDS-----LSNCRLLAGLYL 349
L LS + + + +L L G + S + C L L L
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR--KNLQKSDLSTLVRRCPNLVHLDL 229
Query: 350 SD-NHLSGRIPRWLGNLSALEDIRMSNNNL---EGPIPIEFC-QLDYLTILD-LSNNAIF 403
SD L + L+ L+ + +S E + + L L + + + +
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 289
Query: 404 GTLPSC 409
+
Sbjct: 290 LLKEAL 295
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 5e-06
Identities = 32/218 (14%), Positives = 72/218 (33%), Gaps = 26/218 (11%)
Query: 82 HGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYN 141
+ + F F+ L D+ + + +S + L+ + L+ LK + +
Sbjct: 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRP 193
Query: 142 SVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETL 201
L S+ + + + + DL N L L L ++ + + N+
Sbjct: 194 ------NLKSLEIISGGLPDSVVEDIL-GSDLPN--LEKLVLYVGVEDYGFDGDMNVFRP 244
Query: 202 LLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT--YLPGLMDLNLSRNAFNG 259
L + + L L + Q + LP L +++S
Sbjct: 245 LFSKDRFP-----------NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293
Query: 260 S----IPSSFADMKMLERLDISYNQLTGEIPERMATGC 293
+ +K L+ +++ YN L+ E+ + +
Sbjct: 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 6e-06
Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 19/167 (11%)
Query: 190 WLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT-YLPGLM 248
+++ L L + + + + L L++ + +I LP L
Sbjct: 166 PVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222
Query: 249 DLNLSRNAFNGSIPSSFAD---------MKMLERLDISYNQLTGEIPERMATGCFL--LE 297
L L + L+ L I + + E L LE
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282
Query: 298 ILALSNNNLQG----HIFSKKFNLTNLMRLQLDGNNFTGEISDSLSN 340
+ +S L + + +L + + N + E+ L
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 8e-04
Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 28/177 (15%)
Query: 332 GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDY 391
++S L LL L + + + NL +L +I I L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL-EIISGGLPDSVVEDILGSDLPN 220
Query: 392 LTILDL---SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNR 448
L L L + F + F P F + P L L +
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF-----------------PNLKWLGIVDAE 263
Query: 449 FHGSIPNWI---NILPQLSSLLLGNNYIEGEIPVQLCE----LKEVRLIDLSHNNLS 498
+ +ILPQL ++ + + E L + +K ++ I++ +N LS
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 8e-06
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 313 KKFNLTNLMRLQLDGNNFT-GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDI 371
+ + L LD G+I + L L L + L + L L L+ +
Sbjct: 19 RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76
Query: 372 RMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402
+S N + G + + +L LT L+LS N +
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 30/142 (21%)
Query: 364 NLSALEDIRMSNN-NLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSK 422
+A+ ++ + N + +G I + L L L N +
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-------------------- 61
Query: 423 NKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQ-L 481
+ + P L L+LS NR G + LP L+ L L N ++ ++ L
Sbjct: 62 ISVSN-----LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116
Query: 482 CELKEVRLIDLSHN---NLSGY 500
+L+ ++ +DL + NL+ Y
Sbjct: 117 KKLECLKSLDLFNCEVTNLNDY 138
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625
++ + L L + + + L ++ L LS N + G + L + L+LS N
Sbjct: 48 FVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105
Query: 626 LLHGKIPSQLTVLNTLAVFK 645
L ++ L L +
Sbjct: 106 KL-----KDISTLEPLKKLE 120
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 40/135 (29%)
Query: 250 LNLSRNAFNGSIPSS--FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ 307
L L+ N I S F + L +L++ NQLT I
Sbjct: 34 LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPN------------------- 72
Query: 308 GHIFSKKFNLTNLMRLQLDGNNFT---GEISDSLSNCRLLAGLYLSDNHLSGRIPRWLG- 363
F +++ LQL N ++ L L L L DN +S + G
Sbjct: 73 --AFEG---ASHIQELQLGENKIKEISNKMFLGLHQ---LKTLNLYDNQIS-CVMP--GS 121
Query: 364 --NLSALEDIRMSNN 376
+L++L + +++N
Sbjct: 122 FEHLNSLTSLNLASN 136
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ----GHIFSKKFNLTNLMRLQLDG 327
RL++ N+L +P + L L+LS N +Q G +F K LT L L L
Sbjct: 31 TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDG-VFDK---LTKLTILYLHE 85
Query: 328 NNFT---GEISDSLSNCRLLAGLYLSDNHLSGRIPR-WLGNLSALEDIRMSNN 376
N + D L+ L L L N L +P L++L+ I + N
Sbjct: 86 NKLQSLPNGVFDKLTQ---LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 48/341 (14%), Positives = 91/341 (26%), Gaps = 44/341 (12%)
Query: 148 QLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHL---NLSGNFPNWLVENNTNLET 200
++ ++ + DG + H L+ + +S + N +L +
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224
Query: 201 LLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS--RNAFN 258
+ + + + + L + + E L L
Sbjct: 225 VKVGDFEI-LELVGFFKAAANLEEFCGG-SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282
Query: 259 GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN---NNLQGHIFSKKF 315
+P F + +LD+ Y L E + C LE+L N + +
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342
Query: 316 NLTNL----MRLQLDGNNFTGEISDS-----LSNCRLLAGLYLSDNHLSGRIPRWLG-NL 365
L L + + G +S C+ L + + + ++ +G L
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402
Query: 366 SALEDIRMSNNNLEGPIPIEFCQLD-----------YLTILDLSNNAIFGTLPSCFSPAF 414
L D R+ L+ I LD L T
Sbjct: 403 KNLCDFRLV--LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460
Query: 415 ----IEQVHLSKNKI--EGQLESIIHDSPYLVTLDLSYNRF 449
+ + L EG L P L L++ F
Sbjct: 461 YSPNVRWMLLGYVGESDEG-LMEFSRGCPNLQKLEMRGCCF 500
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.83 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.82 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.82 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.79 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.74 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.73 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.72 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.72 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.72 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.72 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.7 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.69 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.68 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.67 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.65 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.65 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.65 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.64 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.62 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.59 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.59 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.58 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.56 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.55 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.55 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.55 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.48 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.47 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.46 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.44 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.42 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.41 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.38 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.32 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.31 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.28 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.24 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.2 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.08 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.01 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.78 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.71 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.36 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.36 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.36 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.32 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.83 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.74 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.66 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.85 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.83 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.61 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-77 Score=700.07 Aligned_cols=661 Identities=30% Similarity=0.409 Sum_probs=560.5
Q ss_pred ccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccch--hhhcCCCCcEEECCCcccccccChh
Q 040297 7 VLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLS--SIASFTSLKYLSMQDSVFKGALHGQ 84 (773)
Q Consensus 7 l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~i~~~ 84 (773)
+|+++.++++|+.++++.+.+. .++ ..|+.+++|++|||++|.+.+. +|. .++++++|++|++++|.+.+.+|..
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 145 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCC
T ss_pred cChhHhccCcccccCCcCCCcC-CCc-hhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHH
Confidence 8899999999999999999886 555 4899999999999999999886 787 8999999999999999999888874
Q ss_pred hhcCCCCCcEEeCcchhhccCCCcccccccCcc--cccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCC
Q 040297 85 DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLE--PLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGT 162 (773)
Q Consensus 85 ~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~--~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 162 (773)
.+.++++|++|+++ + +.+.+..+.. .+.++++|+.++++........ ......+|++|++++|.+.+.
T Consensus 146 ~~~~l~~L~~L~Ls-------~-n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~ 215 (768)
T 3rgz_A 146 GGLKLNSLEVLDLS-------A-NSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 215 (768)
T ss_dssp SCCCCTTCSEEECC-------S-SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSSCCCSC
T ss_pred HhccCCCCCEEECC-------C-CccCCcCChhhhhhccCCCCCEEECCCCcccccC--CcccCCcCCEEECcCCcCCCC
Confidence 45899999999998 7 4555443322 1788999999999844332211 113344999999999999998
Q ss_pred cChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhh
Q 040297 163 FPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242 (773)
Q Consensus 163 ~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 242 (773)
+|. +.++++|++|++++|.+++.+|..+ .++++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..++.
T Consensus 216 ~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~ 291 (768)
T 3rgz_A 216 IPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG 291 (768)
T ss_dssp CCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCT
T ss_pred Ccc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHh
Confidence 887 9999999999999999998888775 89999999999999998877765 8899999999999999999998887
Q ss_pred CCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCC-CCc
Q 040297 243 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLT-NLM 321 (773)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~ 321 (773)
.+++|++|++++|.+++.+|..|+++++|++|++++|.++|.+|...+..+++|++|++++|.+.+..|..+..++ +|+
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 6799999999999999999999999999999999999999899988677799999999999999988898888887 999
Q ss_pred EEEcccccCCccccccccC--CCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccC
Q 040297 322 RLQLDGNNFTGEISDSLSN--CRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSN 399 (773)
Q Consensus 322 ~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 399 (773)
+|++++|++++.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 9999999999988888776 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCc
Q 040297 400 NAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478 (773)
Q Consensus 400 n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 478 (773)
|.+.+.+|..+. +++|+.|++++|.+++..|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 999998887665 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCC---------CCcccccccc-ccCCCCCCCCCC-----CC
Q 040297 479 VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGP---------PTSIWCDRAS-VYGSPCLPTQSG-----PP 543 (773)
Q Consensus 479 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~-----~~ 543 (773)
..+..+++|+.|++++|+++|.+|..+.............. .....+.... ............ ..
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 99999999999999999999999998876432111000000 0000000000 000000000000 00
Q ss_pred CCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCc
Q 040297 544 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 623 (773)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 623 (773)
........+.... . .....+++|+.|||++|+++|.+|..++.+++|++|+|++|+++|.+|+.|+++++|+.||||
T Consensus 612 ~~~l~~~~~~g~~-~--~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 612 PCNITSRVYGGHT-S--PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp CSCTTSCEEEEEC-C--CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred ccccccceecccC-c--hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 0000000111100 0 011236789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCCCCCCCCC
Q 040297 624 YNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNG 689 (773)
Q Consensus 624 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~~~c~~~~ 689 (773)
+|+++|.+|+.+..+++|++||+++|+++|.||.. +++.++...+|.|||++||.|+. .|....
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 99999999999999999999999999999999985 89999999999999999999987 886543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-69 Score=632.37 Aligned_cols=640 Identities=26% Similarity=0.342 Sum_probs=539.3
Q ss_pred CCCCEEeCCCCCCccc---cCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccCh-hhhcCCC
Q 040297 15 PSLKTLYLSYTNFTGT---VVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHG-QDFRKFK 90 (773)
Q Consensus 15 ~~L~~L~Ls~n~l~~~---i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~-~~~~~l~ 90 (773)
.+++.|||+++.+.|. ++ .++.++++|+.++++.+.+.. +|..++.+++|++|||++|.++|.+|. ..+++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 126 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred CcEEEEECCCCCcCCccCccC-hhHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence 4789999999999988 87 489999999999999887643 568999999999999999999988774 2689999
Q ss_pred CCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCC---CCCCccccEEEccCCCCCCCcChhh
Q 040297 91 NLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNS---VTPKFQLTSISLSGYIDGGTFPKFL 167 (773)
Q Consensus 91 ~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l 167 (773)
+|++|+++ + |.+.+..+...+.++++|++++++........... +....+|++|++++|.+.+..+.
T Consensus 127 ~L~~L~Ls-------~-n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-- 196 (768)
T 3rgz_A 127 GLKFLNVS-------S-NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-- 196 (768)
T ss_dssp TCCEEECC-------S-SEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--
T ss_pred CCCEEECc-------C-CccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--
Confidence 99999998 7 56666666655688999999999844332211111 22334899999999999887664
Q ss_pred cCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCC
Q 040297 168 YHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL 247 (773)
Q Consensus 168 ~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 247 (773)
.++++|++|++++|.+.+.+|. +.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|.. .+++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCC
Confidence 7899999999999999988876 589999999999999999999999999999999999999999888765 47899
Q ss_pred cEEEccCCccCccCchhhhCC-CCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCccc-ccCCCCCcEEEc
Q 040297 248 MDLNLSRNAFNGSIPSSFADM-KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSK-KFNLTNLMRLQL 325 (773)
Q Consensus 248 ~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L 325 (773)
++|++++|.+++.+|..+... ++|++|++++|.+++.+|..+. .+++|++|++++|.+.+.+|.. +..+++|++|++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 999999999999999988775 9999999999999988887765 5999999999999999777665 889999999999
Q ss_pred ccccCCccccccccCCC-CCCeeeCcCCcCCCCcchhhcC--CCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCC
Q 040297 326 DGNNFTGEISDSLSNCR-LLAGLYLSDNHLSGRIPRWLGN--LSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402 (773)
Q Consensus 326 ~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 402 (773)
++|++++.+|..+..++ +|+.|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 99999999999998887 9999999999999888888877 88999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccc
Q 040297 403 FGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481 (773)
Q Consensus 403 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 481 (773)
++.+|..+. +++|+.|++++|.+.+..|..+..+++|++|++++|++++.+|.++..+++|++|++++|++++.+|..+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 988887765 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEccCCcCCCcCcchhhccCcCc-cccCCCCCC-ccccccccccCCCCCCCCCCCCCCCcceEEEEecCccc
Q 040297 482 CELKEVRLIDLSHNNLSGYIPACLVYTSLGE-DYHEEGPPT-SIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSY 559 (773)
Q Consensus 482 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (773)
..+++|++|++++|+++|.+|..+..++... +....+... .++...... .... ............+.......
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ---SGKI--AANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT---TTCB--CCSTTCSCEEEEEECCSCCT
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc---cchh--hhhccccccccccccccccc
Confidence 9999999999999999999999988765322 222221111 111000000 0000 00000011111121111100
Q ss_pred c---------------ccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCcc
Q 040297 560 Y---------------YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624 (773)
Q Consensus 560 ~---------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 624 (773)
. .....++.+..++++.|.++|.+|..++.+++|++|+|++|+++|.+|..|+++++|+.|||++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 0 0011244566788899999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCC
Q 040297 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 678 (773)
Q Consensus 625 N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~ 678 (773)
|+++|.+|+.++.+++|+.||+++|+++|.+|..++.++.++.+++++|+....
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 999999999999999999999999999999999999999999999999986543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-61 Score=562.02 Aligned_cols=580 Identities=21% Similarity=0.234 Sum_probs=480.0
Q ss_pred CcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChh
Q 040297 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQ 84 (773)
Q Consensus 5 ~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~ 84 (773)
.++|..+. +++++|+|++|.++ .+++..|.++++|++|+|++|.+++. .|..++++++|++|++++|.++ .+|..
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 91 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS-QLSDK 91 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCC-CCCTT
T ss_pred cccccccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccC-ccChh
Confidence 45666664 68888888888888 56656788888888888888888876 6778888888888888888887 55654
Q ss_pred hhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcC
Q 040297 85 DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFP 164 (773)
Q Consensus 85 ~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 164 (773)
.|+++++|++|+++ +| .+.. ++...+.+++ +|++|++++|.+.+..|
T Consensus 92 ~~~~l~~L~~L~L~-------~n-~l~~-~~~~~~~~l~------------------------~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 92 TFAFCTNLTELHLM-------SN-SIQK-IKNNPFVKQK------------------------NLITLDLSHNGLSSTKL 138 (680)
T ss_dssp TTTTCTTCSEEECC-------SS-CCCC-CCSCTTTTCT------------------------TCCEEECCSSCCSCCCC
T ss_pred hhccCCCCCEEECC-------CC-ccCc-cChhHccccC------------------------CCCEEECCCCcccccCc
Confidence 68888888888887 53 3322 2222333333 67777788888888888
Q ss_pred hhhcCCCCCCEEECCCCCCccccchhH-hhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhh-
Q 040297 165 KFLYHQHDLKNADLSHLNLSGNFPNWL-VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT- 242 (773)
Q Consensus 165 ~~l~~~~~L~~L~L~~~~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~- 242 (773)
..+.++++|++|++++|.+++..+..+ +..+++|++|++++|.+.+..+..+..+++|+.|+++++.+.+.....+..
T Consensus 139 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 218 (680)
T 1ziw_A 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218 (680)
T ss_dssp CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH
T ss_pred hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHH
Confidence 888999999999999999987666543 125689999999999999988888999999999999999876333222211
Q ss_pred -CCCCCcEEEccCCccCccCchhhhCCCC--CcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCC
Q 040297 243 -YLPGLMDLNLSRNAFNGSIPSSFADMKM--LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTN 319 (773)
Q Consensus 243 -~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 319 (773)
..++|++|++++|.+.+..|..|.+++. |++|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++
T Consensus 219 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (680)
T 1ziw_A 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297 (680)
T ss_dssp HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred hhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCCC
Confidence 1478999999999999999999988865 999999999998 454444566999999999999999999999999999
Q ss_pred CcEEEcccccCCc-----ccc----ccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCc--cccccC
Q 040297 320 LMRLQLDGNNFTG-----EIS----DSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPI--PIEFCQ 388 (773)
Q Consensus 320 L~~L~L~~n~l~~-----~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~ 388 (773)
|++|++++|...+ .+| ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.... ...+..
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence 9999999876543 223 26788999999999999999988889999999999999999864322 223333
Q ss_pred --CCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccch-hhhcCCCCeeEEeCCCCccccccchhhhcCCCCc
Q 040297 389 --LDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLE-SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLS 464 (773)
Q Consensus 389 --l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 464 (773)
.++|+.|++++|.+.+..+..+. +++|+.|++++|.+.+.++ ..+.++++|++|++++|++.+..+..+..+++|+
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence 36899999999999988887665 8899999999999987554 7899999999999999999988888999999999
Q ss_pred EEEccCcccc--ccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCC
Q 040297 465 SLLLGNNYIE--GEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGP 542 (773)
Q Consensus 465 ~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (773)
.|++++|.+. +..|..+..+++|+.|++++|++++..+..+..
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~----------------------------------- 502 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG----------------------------------- 502 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc-----------------------------------
Confidence 9999999987 567889999999999999999998766555543
Q ss_pred CCCCcceEEEEecCccccccccccccccEEecccCcCcccCC--------hhhhccCCCCeEeCCCCcCCCCCccccccC
Q 040297 543 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP--------TQIGYLTRIHALNLSHNNLTGTIPTTFSNL 614 (773)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 614 (773)
+++|++|++++|++++..+ ..++.+++|++|+|++|+++...+..|+++
T Consensus 503 -----------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 503 -----------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp -----------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred -----------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence 3589999999999986422 237899999999999999996555679999
Q ss_pred ccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCc-ccccCCcCcccCCCCCCCCCC
Q 040297 615 KQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVA-QFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 615 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~~~~l~~~~l~~Np~lC~~~l 681 (773)
++|+.|||++|++++..+..|..+++|+.|++++|++++..|..++ .+++++.+++++|||.|+|+.
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999988888899999999999999999999887666 788999999999999999985
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-57 Score=534.94 Aligned_cols=537 Identities=19% Similarity=0.208 Sum_probs=318.5
Q ss_pred EEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeCc
Q 040297 19 TLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMG 98 (773)
Q Consensus 19 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls 98 (773)
..|.++++++ .+|. ..++|++|||++|.++.. .|..|.++++|++|++++|...+.++...|.++++|++|+|+
T Consensus 8 ~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSS-CCCS----SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEEccCCCCC-CCCC----CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 4555555555 5552 345666666666666554 455566666666666666654445533355666666666655
Q ss_pred chhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcCh--hhcCCCCCCEE
Q 040297 99 WVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPK--FLYHQHDLKNA 176 (773)
Q Consensus 99 ~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L 176 (773)
+| .+.+..+ ..+.+++ +|++|++++|.+.+..|. ++.++++|++|
T Consensus 82 -------~N-~l~~~~p-~~~~~l~------------------------~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 82 -------SS-KIYFLHP-DAFQGLF------------------------HLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp -------TC-CCCEECT-TSSCSCS------------------------SCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred -------CC-cCcccCH-hHccCCc------------------------ccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 32 1111000 1111111 222222223333332222 25555666666
Q ss_pred ECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCC--CCcCEEEccCCcCccCCchhHhhCCC------CCc
Q 040297 177 DLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSY--QKLAILDVSKNFFQGHIPVEIGTYLP------GLM 248 (773)
Q Consensus 177 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~------~L~ 248 (773)
++++|.+.+..+...++++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+.. ++ .|+
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~ 207 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLE 207 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBS
T ss_pred ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCcee
Confidence 6666666544433334556666666666666655555555444 55555555555555444433221 11 255
Q ss_pred EEEccCCccCccCchhhhCC---CCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCC--CCCcEE
Q 040297 249 DLNLSRNAFNGSIPSSFADM---KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNL--TNLMRL 323 (773)
Q Consensus 249 ~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L 323 (773)
+|++++|.+++..+..+... ..++.|+++.+.+... ...+.+.+.....+..+ ++|++|
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~----------------~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG----------------FGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS----------------SSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceeccccccccc----------------ccccccCCCChhhhhccccCCccEE
Confidence 55555555554444444322 3444444442211100 00122222222233332 456666
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
++++|.+.+..+..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC
Confidence 66666666555555666666666666666666555556666666666666666666555556666666666666666665
Q ss_pred CCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccC-cccc
Q 040297 404 GTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI-PVQL 481 (773)
Q Consensus 404 ~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~ 481 (773)
+..+..+. +++|+.|++++|.+++.. .+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHH
T ss_pred ccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhh
Confidence 55554443 556666666666665432 2567777777777776 34432 456778888888877532 2234
Q ss_pred cCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccc
Q 040297 482 CELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYY 561 (773)
Q Consensus 482 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (773)
..+++|+.|++++|++++..+....
T Consensus 423 ~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------------------------------- 447 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFSSCSGDQTP------------------------------------------------------- 447 (844)
T ss_dssp TTCTTCCEEEEESCCCCCCCSSSSS-------------------------------------------------------
T ss_pred hcCCccceeeCCCCccccccccccc-------------------------------------------------------
Confidence 5778888888888887754322110
Q ss_pred cccccccccEEecccCcCc-----ccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccc
Q 040297 562 QGRILTSMSGIDLSCNKLT-----GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 562 ~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 636 (773)
..+++|+.|++++|.++ +..|..|..+++|++|+|++|++++..|..|.++++|+.|||++|++++.+|..+.
T Consensus 448 --~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 448 --SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp --CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred --ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 01347888888888886 34456788899999999999999999999999999999999999999988887776
Q ss_pred cCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 637 VLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 637 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
++|+.|++++|++++.+|..+ ..++.++++||||.|+|++.
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred --ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence 899999999999999999754 57888899999999999764
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-55 Score=508.55 Aligned_cols=560 Identities=21% Similarity=0.169 Sum_probs=468.1
Q ss_pred CCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEe
Q 040297 17 LKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLD 96 (773)
Q Consensus 17 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 96 (773)
-+.+|.++++++ .+|. .+. +++++|+|++|.+++. .+..|+++++|++|++++|.+++..|. .|+++++|++|+
T Consensus 6 ~~~~~cs~~~L~-~ip~-~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 79 (680)
T 1ziw_A 6 HEVADCSHLKLT-QVPD-DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLN 79 (680)
T ss_dssp SSEEECCSSCCS-SCCS-CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEE
T ss_pred CCeeECCCCCcc-cccc-ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEE
Confidence 368999999998 8884 454 7999999999999986 567899999999999999999976665 899999999999
Q ss_pred CcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEE
Q 040297 97 MGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNA 176 (773)
Q Consensus 97 Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 176 (773)
++ +| .+. .++...+.+++ +|++|++++|.+.+..|..+.++++|++|
T Consensus 80 L~-------~n-~l~-~l~~~~~~~l~------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 80 LQ-------HN-ELS-QLSDKTFAFCT------------------------NLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp CC-------SS-CCC-CCCTTTTTTCT------------------------TCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CC-------CC-ccC-ccChhhhccCC------------------------CCCEEECCCCccCccChhHccccCCCCEE
Confidence 98 64 332 22222233333 67777778888877777889999999999
Q ss_pred ECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCcc--CCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccC
Q 040297 177 DLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIH--SYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254 (773)
Q Consensus 177 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 254 (773)
++++|.+++..|.. +.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+ ..+++|+.|++++
T Consensus 127 ~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 127 DLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNN 204 (680)
T ss_dssp ECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSEECEEECTT
T ss_pred ECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh-hhhhhhhhhhccc
Confidence 99999998776655 47899999999999999887776554 56899999999999985555444 4488999999999
Q ss_pred CccCccCchhh---hCCCCCcEEEeecccCCCccchhHhhcCC--CccEEEcccCcCCCcCcccccCCCCCcEEEccccc
Q 040297 255 NAFNGSIPSSF---ADMKMLERLDISYNQLTGEIPERMATGCF--LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNN 329 (773)
Q Consensus 255 n~l~~~~p~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 329 (773)
+.+.+.....+ ...++|++|++++|.+++..|..+ ..+. +|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHh-hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 98764333222 145899999999999985555544 3454 49999999999999888899999999999999999
Q ss_pred CCccccccccCCCCCCeeeCcCCcCCC-----Ccc----hhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCC
Q 040297 330 FTGEISDSLSNCRLLAGLYLSDNHLSG-----RIP----RWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNN 400 (773)
Q Consensus 330 l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 400 (773)
+++..|..+..+++|+.|++++|...+ .+| ..|..+++|++|++++|.+.+..+..|.++++|+.|++++|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 999989999999999999999876553 222 26788999999999999999988888999999999999999
Q ss_pred CCCCCC--CCCCC---CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc-hhhhcCCCCcEEEccCcccc
Q 040297 401 AIFGTL--PSCFS---PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP-NWINILPQLSSLLLGNNYIE 474 (773)
Q Consensus 401 ~l~~~~--~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 474 (773)
.+.... ...+. .+.|+.|++++|++++..+..+..+++|++|++++|++.+.+| ..+..+++|++|++++|++.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 764322 22222 3689999999999999999999999999999999999987665 68899999999999999999
Q ss_pred ccCcccccCCCCCCEEEccCCcCC--CcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEE
Q 040297 475 GEIPVQLCELKEVRLIDLSHNNLS--GYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQF 552 (773)
Q Consensus 475 ~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (773)
+..+..+..+++|+.|++++|.+. +.+|..+..
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~--------------------------------------------- 478 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP--------------------------------------------- 478 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT---------------------------------------------
T ss_pred eeChhhhhcCcccccchhccccccccccCCccccc---------------------------------------------
Confidence 888899999999999999999986 344544432
Q ss_pred EecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCc--------cccccCccCCeeeCcc
Q 040297 553 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIP--------TTFSNLKQIESLDLSY 624 (773)
Q Consensus 553 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~LdLs~ 624 (773)
+++|+.|++++|++++..|..|..+++|++|+|++|.+++..+ ..|+++++|+.|+|++
T Consensus 479 -------------l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 479 -------------LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp -------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred -------------CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 4589999999999998878889999999999999999986522 3488999999999999
Q ss_pred ccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCC
Q 040297 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFL 676 (773)
Q Consensus 625 N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~l 676 (773)
|+++...+..|..+++|+.|++++|++++..+..+..+++++.+++++|...
T Consensus 546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 9999666667999999999999999999988888889999999999999653
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-55 Score=503.96 Aligned_cols=534 Identities=21% Similarity=0.201 Sum_probs=348.9
Q ss_pred CEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeC
Q 040297 18 KTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDM 97 (773)
Q Consensus 18 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L 97 (773)
++++.++..++ .+|. .+. +++++|+|++|.+++. .|..|+++++|++|++++|.+.+..|. .|+++++|++|++
T Consensus 15 ~~~~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L 88 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPG-TLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVL 88 (606)
T ss_dssp TEEECTTSCCS-SCCT-TSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEEC
T ss_pred ceEECCCCCcc-cCcC-CCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChh-hccCccccCeeeC
Confidence 45666666666 5653 343 3567777777776654 456667777777777777766644443 5666666666666
Q ss_pred cchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEE
Q 040297 98 GWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNAD 177 (773)
Q Consensus 98 s~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 177 (773)
+ +| .+. +..|..+.++++|++|+
T Consensus 89 s-------~n-~l~-------------------------------------------------~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 89 T-------AN-PLI-------------------------------------------------FMAETALSGPKALKHLF 111 (606)
T ss_dssp T-------TC-CCS-------------------------------------------------EECTTTTSSCTTCCEEE
T ss_pred C-------CC-ccc-------------------------------------------------ccChhhhcccccccEee
Confidence 5 42 111 11223333444444444
Q ss_pred CCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCc--EEEccCC
Q 040297 178 LSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM--DLNLSRN 255 (773)
Q Consensus 178 L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~--~L~L~~n 255 (773)
+++|.+++..|.. +.++++|++|++++|.+.+.....+..+++|++|++++|.+++..|..+ ..+++|+ +|++++|
T Consensus 112 L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 112 FIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTC
T ss_pred ccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCC
Confidence 4444444322222 2445555555555555544332233335555555555555553223222 2245555 5555555
Q ss_pred ccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCC-----CcCcccccCCC--CCcEEEcccc
Q 040297 256 AFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ-----GHIFSKKFNLT--NLMRLQLDGN 328 (773)
Q Consensus 256 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~--~L~~L~L~~n 328 (773)
.+++..|..+.. .+|++|++++|. .++..+ .++..+....+....+. ...+..+..+. +|++|++++|
T Consensus 190 ~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~-~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 190 DIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIF-KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCS---CHHHHH-HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred ccCccChhHhhh-ccccccccCCch---hHHHHh-hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 555544444332 355555555553 222221 22333332222222111 11112222222 5666677777
Q ss_pred cCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCC
Q 040297 329 NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408 (773)
Q Consensus 329 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 408 (773)
.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++.
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 666655556666677777777777666 4556666667777777777776666666666777777777777766654443
Q ss_pred C-C-CCCceeEEECCCccccccc--hhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCccc-ccC
Q 040297 409 C-F-SPAFIEQVHLSKNKIEGQL--ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQ-LCE 483 (773)
Q Consensus 409 ~-~-~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~ 483 (773)
. + .+++|+.|++++|.+.+.. +..+..+++|++|++++|++.+..|..+..+++|+.|++++|++++..+.. +..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 2 2 3667777777777776665 667788888888888888888777888888888999999999888766544 788
Q ss_pred CCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccc
Q 040297 484 LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQG 563 (773)
Q Consensus 484 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (773)
+++|+.|++++|.+++..|..+..
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------------------- 447 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDG-------------------------------------------------------- 447 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTT--------------------------------------------------------
T ss_pred cccCCEEECCCCccCCcCHHHHhC--------------------------------------------------------
Confidence 889999999999888766655443
Q ss_pred cccccccEEecccCcCccc---CChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCC
Q 040297 564 RILTSMSGIDLSCNKLTGE---IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNT 640 (773)
Q Consensus 564 ~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 640 (773)
+++|++|++++|++++. .+..++.+++|++|+|++|.+++..|..|+++++|+.|||++|++++.+|+.+..++.
T Consensus 448 --l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 448 --LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp --CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred --CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 34888899999988862 3367899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 641 LAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 641 L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
| .|++++|++++.+|..++.+++++.+++++|||.|+|+.
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9 999999999999998888899999999999999999974
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=498.03 Aligned_cols=528 Identities=19% Similarity=0.164 Sum_probs=400.3
Q ss_pred CcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChh
Q 040297 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQ 84 (773)
Q Consensus 5 ~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~ 84 (773)
.++|..+.. ++++|+|++|.++ .+++.+|+++++|++|+|++|.+... .|..|+++++|++|++++|.+++..|.
T Consensus 25 ~~iP~~l~~--~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~- 99 (606)
T 3t6q_A 25 NEIPGTLPN--STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAET- 99 (606)
T ss_dssp SSCCTTSCT--TCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTT-
T ss_pred ccCcCCCCC--cCcEEEccCCccC-cCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChh-
Confidence 567777754 7999999999999 66557999999999999999999886 788999999999999999999966665
Q ss_pred hhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcC
Q 040297 85 DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFP 164 (773)
Q Consensus 85 ~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 164 (773)
.|+++++|++|+++ +| .+... +...+.+++ +|++|++++|.+.+..+
T Consensus 100 ~~~~l~~L~~L~L~-------~n-~i~~l-~~~~~~~l~------------------------~L~~L~L~~n~l~~~~~ 146 (606)
T 3t6q_A 100 ALSGPKALKHLFFI-------QT-GISSI-DFIPLHNQK------------------------TLESLYLGSNHISSIKL 146 (606)
T ss_dssp TTSSCTTCCEEECT-------TS-CCSCG-GGSCCTTCT------------------------TCCEEECCSSCCCCCCC
T ss_pred hhcccccccEeecc-------cc-CcccC-CcchhccCC------------------------cccEEECCCCcccccCc
Confidence 89999999999998 63 33221 011122222 45555555565555322
Q ss_pred hhhcCCCCCCEEECCCCCCccccchhHhhcCCCCC--EEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhh
Q 040297 165 KFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLE--TLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242 (773)
Q Consensus 165 ~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 242 (773)
..+..+++|++|++++|.+++..|.. +..+++|+ +|++++|.+.+..+..+. ..+|++|++++|. .++..+..
T Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~ 221 (606)
T 3t6q_A 147 PKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKG 221 (606)
T ss_dssp CTTCCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHH
T ss_pred ccccCCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhh
Confidence 23333666666666666666444433 35666666 666666666655554443 2456666666654 12222221
Q ss_pred CCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCC--CccEEEcccCcCCCcCcccccCCCCC
Q 040297 243 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF--LLEILALSNNNLQGHIFSKKFNLTNL 320 (773)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L 320 (773)
+.++....+.-..+. .+... .++...+.++. +|+.|++++|.+.+..+..+..+++|
T Consensus 222 -l~~~~l~~l~~~~~~-----------~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 280 (606)
T 3t6q_A 222 -LKNSTIQSLWLGTFE-----------DMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280 (606)
T ss_dssp -TTTCEEEEEECCCCT-----------TSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred -ccccchhheechhhc-----------ccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence 333333322221111 01100 22222222232 68888888888888877778888889
Q ss_pred cEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccc-cccCCCCCcEEEccC
Q 040297 321 MRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPI-EFCQLDYLTILDLSN 399 (773)
Q Consensus 321 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~ 399 (773)
++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|+.|++++
T Consensus 281 ~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp SEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred CEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 99999888888 6777888888899999999988877778888888999999999888765554 478889999999999
Q ss_pred CCCCCCC--CCCC-CCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccch-hhhcCCCCcEEEccCccccc
Q 040297 400 NAIFGTL--PSCF-SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPN-WINILPQLSSLLLGNNYIEG 475 (773)
Q Consensus 400 n~l~~~~--~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~ 475 (773)
|.+.+.. +..+ .+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+++
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 9887664 4333 478899999999999888888999999999999999999876554 48889999999999999998
Q ss_pred cCcccccCCCCCCEEEccCCcCCCcCc---chhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEE
Q 040297 476 EIPVQLCELKEVRLIDLSHNNLSGYIP---ACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQF 552 (773)
Q Consensus 476 ~~~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (773)
..|..+..+++|+.|++++|++++... ..+.
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---------------------------------------------- 473 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ---------------------------------------------- 473 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG----------------------------------------------
T ss_pred cCHHHHhCCCCCCEEECCCCCCCccccccchhhc----------------------------------------------
Confidence 889999999999999999999976321 1221
Q ss_pred EecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCC
Q 040297 553 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632 (773)
Q Consensus 553 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 632 (773)
.+++|+.|++++|++++..|..|+.+++|++|+|++|++++..|+.|.++++| .||+++|++++.+|
T Consensus 474 ------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 474 ------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp ------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred ------------cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 24689999999999999889999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCCCEEEccCCcccccCC
Q 040297 633 SQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 633 ~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
..+..+++|+.|++++|++.+..+
T Consensus 541 ~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 541 SLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999987655
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=496.46 Aligned_cols=539 Identities=17% Similarity=0.160 Sum_probs=378.5
Q ss_pred CCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEe
Q 040297 17 LKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLD 96 (773)
Q Consensus 17 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 96 (773)
-++++.+++.++ .+|. .+. ++|++|+|++|.+++. .+..|.++++|++|++++|.+++..|. .|.++++|++|+
T Consensus 13 ~~~~~c~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPD-DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSCCS-SCCT-TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEE
T ss_pred CCceEccCCCcc-cCCC-CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeE
Confidence 467888888888 7774 443 7888888888888775 556788888888888888888854444 788888888888
Q ss_pred CcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEE
Q 040297 97 MGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNA 176 (773)
Q Consensus 97 Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 176 (773)
++ +| .+....+ ..+.+++ +|++|++++|.+.+..+..++++++|++|
T Consensus 87 Ls-------~n-~l~~~~p-~~~~~l~------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 87 LT-------GN-PIQSFSP-GSFSGLT------------------------SLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp CT-------TC-CCCCCCT-TSSTTCT------------------------TCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CC-------CC-cccccCh-hhcCCcc------------------------cCCEEEccCCccccccccccCCCCCCCEE
Confidence 87 53 2221111 1122222 33344444444444444445555555555
Q ss_pred ECCCCCCcc-ccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcC----EEEccCCcCccCCchhHhhCCCCCcEEE
Q 040297 177 DLSHLNLSG-NFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLA----ILDVSKNFFQGHIPVEIGTYLPGLMDLN 251 (773)
Q Consensus 177 ~L~~~~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 251 (773)
++++|.+.+ .+|..+ +++++|++|++++|.+.+..+..+..+++|+ +|++++|.++ .++...+... +|++|+
T Consensus 134 ~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~ 210 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELT 210 (606)
T ss_dssp ECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEE
T ss_pred eCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeee
Confidence 555555543 334432 4555555555555555554444444333322 4555555554 3333333322 455555
Q ss_pred ccCCccC-ccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCC--CCcEEEc-cc
Q 040297 252 LSRNAFN-GSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLT--NLMRLQL-DG 327 (773)
Q Consensus 252 L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L-~~ 327 (773)
+++|.+. +..|..+.+++.|+.+++..+.+.+. ..+....+..+..+. .++.+++ ..
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-------------------~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE-------------------RNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS-------------------CCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred ccCCccchhHHHHHhccccccccccccccccccC-------------------CcccccChHHhhhhhhccHhheecccc
Confidence 5555443 23344445555555544443332210 000001111111111 4556666 56
Q ss_pred ccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCC
Q 040297 328 NNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLP 407 (773)
Q Consensus 328 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 407 (773)
|.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+..
T Consensus 272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 272 NDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp TTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-
T ss_pred ccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-
Confidence 677766666 778888888888888886 345 677788888888888888 4666 44 8888888888888654433
Q ss_pred CCCCCCceeEEECCCccccccc--hhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCc-ccccCC
Q 040297 408 SCFSPAFIEQVHLSKNKIEGQL--ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP-VQLCEL 484 (773)
Q Consensus 408 ~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l 484 (773)
....+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..+ ..+..+
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 3335788999999999888763 7888999999999999999984 66888999999999999999998877 689999
Q ss_pred CCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccccc
Q 040297 485 KEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGR 564 (773)
Q Consensus 485 ~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (773)
++|+.|++++|.+++..|..+..
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------------------- 446 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLG--------------------------------------------------------- 446 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTT---------------------------------------------------------
T ss_pred ccCCEEECcCCCCCccchhhhcC---------------------------------------------------------
Confidence 99999999999998877766543
Q ss_pred ccccccEEecccCcCcc-cCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCE
Q 040297 565 ILTSMSGIDLSCNKLTG-EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAV 643 (773)
Q Consensus 565 ~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 643 (773)
+++|+.|++++|++++ .+|..++.+++|++|+|++|.+++..|..|+++++|+.|+|++|++++.+|..+..+++|+.
T Consensus 447 -l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 447 -LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp -CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred -CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 3589999999999998 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcccccCCCCCcccc-cCCcCcccCCCCCCCCCCCC
Q 040297 644 FKVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFLCGWPLSK 683 (773)
Q Consensus 644 L~ls~N~l~~~~p~~~~~~~-~l~~~~l~~Np~lC~~~l~~ 683 (773)
|++++|+++. +|..+..++ +++.+++++|||.|+|+..+
T Consensus 526 L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 526 LDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp EECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred EECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 9999999995 555577776 59999999999999998753
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-53 Score=504.83 Aligned_cols=559 Identities=21% Similarity=0.172 Sum_probs=407.9
Q ss_pred CcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCcc-chhhhcCCCCcEEECCCcccccccCh
Q 040297 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQL-LSSIASFTSLKYLSMQDSVFKGALHG 83 (773)
Q Consensus 5 ~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~i~~ 83 (773)
..+|. -.+++++|||++|.++ .+++.+|.++++|++|||++|..... + |..|.++++|++|+|++|.+.+..|.
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 56776 4579999999999999 55557999999999999999977665 5 78899999999999999999976676
Q ss_pred hhhcCCCCCcEEeCcchhhccCCCcccccccCc-ccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCC
Q 040297 84 QDFRKFKNLEHLDMGWVQLILSNNHFFQIPISL-EPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGT 162 (773)
Q Consensus 84 ~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~-~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 162 (773)
.|+++++|++|+|+ + |.+.+..+. ..+.+++ +|++|++++|.+.+.
T Consensus 92 -~~~~l~~L~~L~Ls-------~-n~l~~~~~~~~~~~~L~------------------------~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 92 -AFQGLFHLFELRLY-------F-CGLSDAVLKDGYFRNLK------------------------ALTRLDLSKNQIRSL 138 (844)
T ss_dssp -SSCSCSSCCCEECT-------T-CCCSSCCSTTCCCSSCS------------------------SCCEEEEESCCCCCC
T ss_pred -HccCCcccCEeeCc-------C-CCCCcccccCccccccC------------------------CCCEEECCCCccccc
Confidence 89999999999998 7 444432221 1233343 667777778887776
Q ss_pred cC-hhhcCCCCCCEEECCCCCCccccchhHhhcC--CCCCEEEccCCcCccCCccCccCCCC------cCEEEccCCcCc
Q 040297 163 FP-KFLYHQHDLKNADLSHLNLSGNFPNWLVENN--TNLETLLLANNSLFGSFRMPIHSYQK------LAILDVSKNFFQ 233 (773)
Q Consensus 163 ~~-~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~Ls~n~l~ 233 (773)
.+ ..+.++++|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+..+..+..+++ |++|++++|.+.
T Consensus 139 ~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp CCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred ccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 54 679999999999999999988777664 455 89999999999999988877776665 999999999998
Q ss_pred cCCchhHhhCC--CCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhc--CCCccEEEcccCcCCCc
Q 040297 234 GHIPVEIGTYL--PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATG--CFLLEILALSNNNLQGH 309 (773)
Q Consensus 234 ~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--l~~L~~L~L~~n~l~~~ 309 (773)
+.++..+...+ ++++.+.++.+..... +..+.+. ......+.+ .++|+.|++++|.+.+.
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred hhHHHHHHhhcCcccccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEEECCCCccccc
Confidence 88887766543 5788898875443211 1122222 111112222 24566677776666666
Q ss_pred CcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCC
Q 040297 310 IFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQL 389 (773)
Q Consensus 310 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 389 (773)
.+..+..+++|++|++++|++++..|..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+..+..|..+
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 66666667777777777777766666666677777777777777766666667777777777777777766666666677
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccccc-chhhhcCCCCcEEEc
Q 040297 390 DYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSI-PNWINILPQLSSLLL 468 (773)
Q Consensus 390 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L 468 (773)
++|+.|++++|.+++... +++|+.|++++|+++.... ...+++.|++++|++++.. +..+..+++|+.|++
T Consensus 362 ~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp CCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccc----cccccceeecccCccccCchhhhhhcCCccceeeC
Confidence 777777777776653222 5567777777777764322 2456888888888888642 334567899999999
Q ss_pred cCccccccCcc-cccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCc
Q 040297 469 GNNYIEGEIPV-QLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKE 547 (773)
Q Consensus 469 ~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (773)
++|++++..+. .+..+++|+.|++++|.+++..+......
T Consensus 434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~--------------------------------------- 474 (844)
T 3j0a_A 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD--------------------------------------- 474 (844)
T ss_dssp ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS---------------------------------------
T ss_pred CCCcccccccccccccCCccccccCCCCccccccccccchh---------------------------------------
Confidence 99999865443 45668899999999999874332211000
Q ss_pred ceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 548 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
.+ ..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+. ++|+.|||++|++
T Consensus 475 ------------~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 475 ------------VF--EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL 538 (844)
T ss_dssp ------------CS--SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC
T ss_pred ------------hh--cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC
Confidence 00 1256899999999999998899999999999999999999988777776 8999999999999
Q ss_pred cccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCCCCCCCCC
Q 040297 628 HGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLSKSCDDNG 689 (773)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~~~c~~~~ 689 (773)
++.+|+.+. +|+.+++++|++....+- ..+.. .....|...|+.+....|..+.
T Consensus 539 ~~~~~~~~~---~L~~l~l~~Np~~C~c~~--~~f~~---~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 539 LAPNPDVFV---SLSVLDITHNKFICECEL--STFIN---WLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp CCCCSCCCS---SCCEEEEEEECCCCSSSC--CSHHH---HHHHTTTTTCCCGGGCCCSSCS
T ss_pred CCCChhHhC---CcCEEEecCCCccccccc--HHHHH---HHHhcCcccccccccCccCCch
Confidence 999998764 789999999999875542 12211 1123456667776667776543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=481.72 Aligned_cols=520 Identities=18% Similarity=0.162 Sum_probs=365.2
Q ss_pred CcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChh
Q 040297 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQ 84 (773)
Q Consensus 5 ~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~ 84 (773)
.++|..+. +++++|+|++|.++ .+++.+|.++++|++|+|++|.+++. .|..|+++++|++|++++|.+++..|.
T Consensus 24 ~~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~- 98 (606)
T 3vq2_A 24 SKVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPG- 98 (606)
T ss_dssp SSCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTT-
T ss_pred ccCCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChh-
Confidence 56777665 79999999999999 66657899999999999999999876 678899999999999999999966565
Q ss_pred hhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCC-Cc
Q 040297 85 DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGG-TF 163 (773)
Q Consensus 85 ~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~ 163 (773)
.|+++++|++|+++ +| .+... +...+.+++ +|++|++++|.+.+ .+
T Consensus 99 ~~~~l~~L~~L~L~-------~n-~l~~~-~~~~~~~l~------------------------~L~~L~L~~n~l~~~~l 145 (606)
T 3vq2_A 99 SFSGLTSLENLVAV-------ET-KLASL-ESFPIGQLI------------------------TLKKLNVAHNFIHSCKL 145 (606)
T ss_dssp SSTTCTTCCEEECT-------TS-CCCCS-SSSCCTTCT------------------------TCCEEECCSSCCCCCCC
T ss_pred hcCCcccCCEEEcc-------CC-ccccc-cccccCCCC------------------------CCCEEeCCCCcccceec
Confidence 89999999999998 64 33321 111233333 67777778888876 57
Q ss_pred ChhhcCCCCCCEEECCCCCCccccchhHhhcCCC----CCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchh
Q 040297 164 PKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTN----LETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239 (773)
Q Consensus 164 ~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 239 (773)
|..+.++++|++|++++|.+++..|..+ +.+++ +++|++++|.+.+..+..+... +|++|++++|.+.+.....
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~ 223 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT 223 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHH
T ss_pred hHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHH
Confidence 9999999999999999999997666543 44444 5599999999987766666554 8999999999987555555
Q ss_pred HhhCCCCCcEEEccCCccCcc------CchhhhCCC--CCcEEEe-ecccCCCccchhHhhcCCCccEEEcccCcCCCcC
Q 040297 240 IGTYLPGLMDLNLSRNAFNGS------IPSSFADMK--MLERLDI-SYNQLTGEIPERMATGCFLLEILALSNNNLQGHI 310 (773)
Q Consensus 240 ~~~~l~~L~~L~L~~n~l~~~------~p~~~~~l~--~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 310 (773)
....+++++.+++..+.+.+. .+..+..+. .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+....
T Consensus 224 ~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~ 301 (606)
T 3vq2_A 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE 301 (606)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC
T ss_pred HhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhh
Confidence 556689999998876554321 111222221 2344444 44445444443 333555555555555554322
Q ss_pred cccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCC--ccccccC
Q 040297 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGP--IPIEFCQ 388 (773)
Q Consensus 311 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~ 388 (773)
.+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|.+.+. .+..+..
T Consensus 302 --~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 302 --DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp --CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred --hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence 444555555555555555 2444 23 4555555555555333221 344455555555555554433 1344444
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc-hhhhcCCCCcEEE
Q 040297 389 LDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP-NWINILPQLSSLL 467 (773)
Q Consensus 389 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 467 (773)
+++|+ .|++++|.+.+. +..+..+++|++|++++|++.+..| ..+..+++|++|+
T Consensus 375 ~~~L~-----------------------~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 375 TNSLR-----------------------HLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CSCCC-----------------------EEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCccc-----------------------EeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 44444 455555544432 2456667777777777777776665 5677778888888
Q ss_pred ccCccccccCcccccCCCCCCEEEccCCcCCCc-CcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCC
Q 040297 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY-IPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGK 546 (773)
Q Consensus 468 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (773)
+++|++++..|..+..+++|+.|++++|++++. +|..+..
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------------------------------- 471 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------------------------------------- 471 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------------------------
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc---------------------------------------
Confidence 888888877777788888888888888887763 4444332
Q ss_pred cceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCcccc
Q 040297 547 EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 626 (773)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 626 (773)
+++|+.|++++|++++..|..++.+++|++|+|++|++++.+|..|+++++|+.|||++|+
T Consensus 472 -------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 472 -------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp -------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred -------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 3478888888888888888889999999999999999998889999999999999999999
Q ss_pred CcccCCcccccCC-CCCEEEccCCcccccCC
Q 040297 627 LHGKIPSQLTVLN-TLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 627 l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p 656 (773)
++ .+|..+..++ +|++|++++|++.+..+
T Consensus 533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 533 IE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred Cc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 98 5666688887 59999999999987555
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=436.41 Aligned_cols=510 Identities=20% Similarity=0.214 Sum_probs=281.3
Q ss_pred CCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEe
Q 040297 17 LKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLD 96 (773)
Q Consensus 17 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 96 (773)
.++++-++.+++ ++|. .+ -+++++|+|++|.+++. .+..|.++++|++|++++|.+++ ++...|+++++|++|+
T Consensus 9 ~~~~~c~~~~l~-~ip~-~l--~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~ 82 (570)
T 2z63_A 9 NITYQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLI 82 (570)
T ss_dssp TTEEECCSSCCS-SCCS-SS--CSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCcc-ccCC-Cc--cccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEe
Confidence 345556655565 5553 22 24566666666666654 34456666666666666666653 3333566666666666
Q ss_pred CcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEE
Q 040297 97 MGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNA 176 (773)
Q Consensus 97 Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 176 (773)
++ +|. +. +..|.++.++++|++|
T Consensus 83 L~-------~n~-l~-------------------------------------------------~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 83 LT-------GNP-IQ-------------------------------------------------SLALGAFSGLSSLQKL 105 (570)
T ss_dssp CT-------TCC-CC-------------------------------------------------EECTTTTTTCTTCCEE
T ss_pred Cc-------CCc-CC-------------------------------------------------ccCHhhhcCccccccc
Confidence 65 421 11 1111233334444444
Q ss_pred ECCCCCCccccchhHhhcCCCCCEEEccCCcCcc-CCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCC----cEEE
Q 040297 177 DLSHLNLSGNFPNWLVENNTNLETLLLANNSLFG-SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGL----MDLN 251 (773)
Q Consensus 177 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L----~~L~ 251 (773)
++++|.+++. +...++++++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..+.. +++| ++|+
T Consensus 106 ~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L~ 183 (570)
T 2z63_A 106 VAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLD 183 (570)
T ss_dssp ECTTSCCCCS-TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEEE
T ss_pred cccccccccC-CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhcc
Confidence 4444444321 11112445555555555555444 23444555555555555555554322222222 3344 5566
Q ss_pred ccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCC------cCcccccCCC--CCcEE
Q 040297 252 LSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG------HIFSKKFNLT--NLMRL 323 (773)
Q Consensus 252 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~--~L~~L 323 (773)
+++|.+++..|..+..+ +|++|++++|.............+..++.+.+....+.. .....+..++ .++.+
T Consensus 184 l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp CTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred cCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 66666555555555444 566666665543322222223335555544443222111 1111111111 23444
Q ss_pred Ecccc-cCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCC
Q 040297 324 QLDGN-NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAI 402 (773)
Q Consensus 324 ~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 402 (773)
+++++ .+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBS
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcc
Confidence 45444 444445555555555666666655555 344445555 5566666555555 2332 2445555555555554
Q ss_pred CCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccccc--chhhhcCCCCcEEEccCccccccCccc
Q 040297 403 FGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSI--PNWINILPQLSSLLLGNNYIEGEIPVQ 480 (773)
Q Consensus 403 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~ 480 (773)
.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+ .
T Consensus 338 ~~~~~~-------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~ 391 (570)
T 2z63_A 338 GNAFSE-------------------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-N 391 (570)
T ss_dssp CCBCCC-------------------------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-E
T ss_pred cccccc-------------------------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-c
Confidence 433222 34555666666666655432 5556666667777777666664333 3
Q ss_pred ccCCCCCCEEEccCCcCCCcCcc-hhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccc
Q 040297 481 LCELKEVRLIDLSHNNLSGYIPA-CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSY 559 (773)
Q Consensus 481 ~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (773)
+..+++|+.|++++|.+.+..|. .+.
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------- 418 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFL----------------------------------------------------- 418 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTT-----------------------------------------------------
T ss_pred ccccCCCCEEEccCCccccccchhhhh-----------------------------------------------------
Confidence 66677777777777766554331 111
Q ss_pred cccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCC-CCCccccccCccCCeeeCccccCcccCCcccccC
Q 040297 560 YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLT-GTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 638 (773)
Q Consensus 560 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 638 (773)
.+++|++|++++|++.+..|..+..+++|++|+|++|.++ +.+|..|+.+++|+.||+++|++++.+|..+..+
T Consensus 419 -----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 419 -----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp -----TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred -----cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 1346777777777777777777777777777788777776 4677777777778888888887777777777777
Q ss_pred CCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 639 NTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 639 ~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
++|+.|++++|++++..|..+..+++++.+++++||+.|+|+.
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 7788888888877777777677777777778888888887764
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-48 Score=439.05 Aligned_cols=461 Identities=18% Similarity=0.125 Sum_probs=381.7
Q ss_pred cccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEc
Q 040297 148 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227 (773)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 227 (773)
+++.|++++|.+.+..+..+.++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 7999999999998888889999999999999999998654444 588999999999999998888889999999999999
Q ss_pred cCCcCccCCchhHhhCCCCCcEEEccCCccCc-cCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCc----cEEEcc
Q 040297 228 SKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLL----EILALS 302 (773)
Q Consensus 228 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L----~~L~L~ 302 (773)
++|.++ .++...+..+++|++|++++|.+++ .+|..|+++++|++|++++|.++ .++...+..+.+| +.|+++
T Consensus 108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccC
Confidence 999998 5554334558999999999999987 46999999999999999999998 4544444457777 899999
Q ss_pred cCcCCCcCcccccCCCCCcEEEcccccCCc-cccccccCCCCCCeeeCcCCcCC------CCcchhhcCCC--CCcEEEc
Q 040297 303 NNNLQGHIFSKKFNLTNLMRLQLDGNNFTG-EISDSLSNCRLLAGLYLSDNHLS------GRIPRWLGNLS--ALEDIRM 373 (773)
Q Consensus 303 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~------~~~~~~~~~l~--~L~~L~L 373 (773)
+|.+.+..+..+... +|++|++++|.... ..+..+..++.++...+....+. ......+..+. .++.+++
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 999998888777655 89999999985432 34556677777776665432221 11122233332 3567788
Q ss_pred ccC-cCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccc
Q 040297 374 SNN-NLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGS 452 (773)
Q Consensus 374 ~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 452 (773)
.++ .+.+..+..+..+++|+.|++++|.+.+........ .|+.|++++|.+..... ..+++|+.|++++|.+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCB
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccc
Confidence 877 677788888999999999999999998543334446 99999999999985443 4678999999999998876
Q ss_pred cchhhhcCCCCcEEEccCccccccC--cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccc
Q 040297 453 IPNWINILPQLSSLLLGNNYIEGEI--PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASV 530 (773)
Q Consensus 453 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (773)
.+. ..+++|++|++++|++++.. +..+..+++|+.|++++|.+.+..+. +..
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~----------------------- 394 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG----------------------- 394 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET-----------------------
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc-----------------------
Confidence 654 67999999999999998654 67889999999999999998754332 222
Q ss_pred cCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCC-hhhhccCCCCeEeCCCCcCCCCCcc
Q 040297 531 YGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP-TQIGYLTRIHALNLSHNNLTGTIPT 609 (773)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~ 609 (773)
+++|+.|++++|.+++..| ..+..+++|++|++++|.+++..|.
T Consensus 395 -----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 395 -----------------------------------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp -----------------------------------CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred -----------------------------------cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 4589999999999997766 5789999999999999999999999
Q ss_pred ccccCccCCeeeCccccCc-ccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCC
Q 040297 610 TFSNLKQIESLDLSYNLLH-GKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 610 ~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
.|.++++|+.|++++|+++ +.+|..+..+++|+.|++++|++++..|..+..+++++.+++++|....
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 9999999999999999998 6899999999999999999999999999989999999999999997644
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-47 Score=431.75 Aligned_cols=421 Identities=19% Similarity=0.219 Sum_probs=271.8
Q ss_pred hcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccC-CccCccCCCCcCEEEccCCcCccCCchhHhhCCC
Q 040297 167 LYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGS-FRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLP 245 (773)
Q Consensus 167 l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 245 (773)
+.++++|++|++++|.+++..|.. ++++++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.+|...+..++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred ccccccCCEEECCCCccCccCHHH-hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 334444555555555554333333 35677777777777777652 4456777788888888888754466655555578
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcC---cccccCCCCCcE
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHI---FSKKFNLTNLMR 322 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~ 322 (773)
+|++|++++|.+++..|..++.+++|++|+++.|.+. .+|...+..+++|++|++++|.+++.. ......+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 8888888888888888888888999999999998887 777777767888999999998888742 122335678888
Q ss_pred EEcccccCCccccc----cccCCCCCCeeeCcCCcCCCCc------chhhcCCCCCcEEEcccCcCCCCc-----ccccc
Q 040297 323 LQLDGNNFTGEISD----SLSNCRLLAGLYLSDNHLSGRI------PRWLGNLSALEDIRMSNNNLEGPI-----PIEFC 387 (773)
Q Consensus 323 L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~ 387 (773)
|++++|.+++..+. .+..+++|+.+++++|.+.+.. ...+..+.+++.|++.++.+.... +..+.
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 88888877654332 3355667777777777665421 112334455555555555443210 00111
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccch---hhhcCCCCc
Q 040297 388 QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPN---WINILPQLS 464 (773)
Q Consensus 388 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~ 464 (773)
. ...++.|++++|.+.......+..+++|++|++++|++++.+|. .++.+++|+
T Consensus 308 ~-----------------------~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 308 L-----------------------LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp H-----------------------STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred h-----------------------cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 1 23455555555555544444445566677777777766655432 255566777
Q ss_pred EEEccCccccccCc--ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCC
Q 040297 465 SLLLGNNYIEGEIP--VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGP 542 (773)
Q Consensus 465 ~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (773)
+|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------------------- 408 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW----------------------------------- 408 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-----------------------------------
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-----------------------------------
Confidence 77777777664322 34666777777777777665 34432221
Q ss_pred CCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeC
Q 040297 543 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL 622 (773)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL 622 (773)
+++|++|++++|+++ .+|..+. ++|++|+|++|++++.+ ..+++|++|||
T Consensus 409 -----------------------~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~L 458 (549)
T 2z81_A 409 -----------------------PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYI 458 (549)
T ss_dssp -----------------------CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEEC
T ss_pred -----------------------cccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEEC
Confidence 236677777777776 3444332 46777777777777542 46777788888
Q ss_pred ccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 623 SYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 623 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
++|+++ .+|+ ...+++|++|++++|++++.+|..+..+++++.+++++|||.|+|+
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 888777 5555 3567778888888888887777777777788888888888888876
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=427.20 Aligned_cols=551 Identities=19% Similarity=0.172 Sum_probs=343.2
Q ss_pred CcccccCCCCC---CCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCccccccc
Q 040297 5 SKVLQSIGSLP---SLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGAL 81 (773)
Q Consensus 5 ~~l~~~~~~l~---~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i 81 (773)
+.+|.+...+. .-++.+-++.+++ +||. .+- +++++|||++|.++.. .+.+|.++++|++|||++|+++ .+
T Consensus 18 ~~~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~-~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~-~i 91 (635)
T 4g8a_A 18 SSIPESWEPCVEVVPNITYQCMELNFY-KIPD-NLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQ-TI 91 (635)
T ss_dssp -------CCSEEEETTTEEECTTSCCS-SCCS-SSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCC-EE
T ss_pred CCCCCCCCCccccCCCCEEECCCCCcC-ccCC-CCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCC-Cc
Confidence 34454444332 2234555555666 5653 221 3567777777776653 3455677777777777777766 34
Q ss_pred ChhhhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCC
Q 040297 82 HGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGG 161 (773)
Q Consensus 82 ~~~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 161 (773)
+..+|.++++|++|+|+ +|. ++. ++...+.+++ +|++|++++|.+.+
T Consensus 92 ~~~~f~~L~~L~~L~Ls-------~N~-l~~-l~~~~f~~L~------------------------~L~~L~Ls~N~l~~ 138 (635)
T 4g8a_A 92 EDGAYQSLSHLSTLILT-------GNP-IQS-LALGAFSGLS------------------------SLQKLVAVETNLAS 138 (635)
T ss_dssp CTTTTTTCTTCCEEECT-------TCC-CCE-ECGGGGTTCT------------------------TCCEEECTTSCCCC
T ss_pred ChhHhcCCCCCCEEEcc-------CCc-CCC-CCHHHhcCCC------------------------CCCEEECCCCcCCC
Confidence 44466667777777766 421 111 1111111111 22222222232322
Q ss_pred CcChhhcCCCCCCEEECCCCCCccc-cchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhH
Q 040297 162 TFPKFLYHQHDLKNADLSHLNLSGN-FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEI 240 (773)
Q Consensus 162 ~~~~~l~~~~~L~~L~L~~~~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 240 (773)
..+..++++++|++|++++|.+.+. .|.. +..+++|++|++++|++.+..+..+..+.+++
T Consensus 139 l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~----------------- 200 (635)
T 4g8a_A 139 LENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------------- 200 (635)
T ss_dssp STTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------------
T ss_pred CChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhh-----------------
Confidence 2223344444455555554444332 2222 24444555555555544444333332222111
Q ss_pred hhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCc------CCCcCcccc
Q 040297 241 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNN------LQGHIFSKK 314 (773)
Q Consensus 241 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~ 314 (773)
.....++++.|.+....+..+ ....++.+++++|.....++...+.++..++...+..+. +.......+
T Consensus 201 ----~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 201 ----LLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp ----TCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred ----hhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 123345555555553333322 223345555555544433444444445555544443222 112222333
Q ss_pred cCCCCCcEEEcccccCCc---cccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCC
Q 040297 315 FNLTNLMRLQLDGNNFTG---EISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDY 391 (773)
Q Consensus 315 ~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 391 (773)
..+..+...++..+.... ..+..+..+.+++.+++.++.+.... .+.....++.|++.+|.+.+..+ ..+..
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~ 350 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKS 350 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTT
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchh
Confidence 344455555554443321 22334555677777877777765432 34556778888888887764433 34567
Q ss_pred CcEEEccCCCCCCCCCCCCCCCceeEEECCCccccc--cchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEcc
Q 040297 392 LTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEG--QLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLG 469 (773)
Q Consensus 392 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 469 (773)
|+.+++..|..... +....+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++.
T Consensus 351 L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 351 LKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp CCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECT
T ss_pred hhhcccccccCCCC-cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhh
Confidence 78888888876533 333447788888888887753 345667778899999999998874 45567789999999999
Q ss_pred CccccccCc-ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcc
Q 040297 470 NNYIEGEIP-VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEE 548 (773)
Q Consensus 470 ~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (773)
.+......+ ..+..+++++.++++.|.+.+..+..+..
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~----------------------------------------- 467 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----------------------------------------- 467 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----------------------------------------
T ss_pred hcccccccccccccccccccccccccccccccccccccc-----------------------------------------
Confidence 888775544 56788999999999999998766654432
Q ss_pred eEEEEecCccccccccccccccEEecccCcC-cccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 549 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKL-TGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 549 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
++.++.|++++|.+ .+..|..|..+++|++|+|++|+|++..|..|+++++|++|+|++|++
T Consensus 468 -----------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 468 -----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp -----------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred -----------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 34889999999985 446788999999999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCCEEEccCCcccccCCCCCccc-ccCCcCcccCCCCCCCCCCC
Q 040297 628 HGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQF-STFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~l~~~~l~~Np~lC~~~l~ 682 (773)
++.+|..|..+++|++|++++|++++.+|..+..+ ++++.+++++|||.|+|.+.
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 99999999999999999999999999999988887 68999999999999999753
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=423.09 Aligned_cols=386 Identities=19% Similarity=0.193 Sum_probs=267.6
Q ss_pred cChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhh
Q 040297 163 FPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242 (773)
Q Consensus 163 ~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 242 (773)
.|..+.++++|++|++++|.+.+.+|...+.++++|++|++++|.+.+..|..+..+++|++|+++.|.+. .+|..++.
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~ 193 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFAD 193 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHH
T ss_pred hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHh
Confidence 34556777788888888887656666544578889999999999998888888888999999999999886 67777766
Q ss_pred CCCCCcEEEccCCccCccC--c-hhhhCCCCCcEEEeecccCCCccchhHh---hcCCCccEEEcccCcCCCcCcccccC
Q 040297 243 YLPGLMDLNLSRNAFNGSI--P-SSFADMKMLERLDISYNQLTGEIPERMA---TGCFLLEILALSNNNLQGHIFSKKFN 316 (773)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~--p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~ 316 (773)
.+++|++|++++|++++.. | .....+++|++|++++|.+++..+..+. ..+.+|+.+++++|.+.+...-.
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~--- 270 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN--- 270 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC---
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc---
Confidence 6889999999999888642 1 2234578889999998888765554432 23566777777776655421100
Q ss_pred CCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCC-----cchhhcCCCCCcEEEcccCcCCCCccccc-cCCC
Q 040297 317 LTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR-----IPRWLGNLSALEDIRMSNNNLEGPIPIEF-CQLD 390 (773)
Q Consensus 317 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~ 390 (773)
. .....+..+++|+.|++.++.+... .+..+....+|+.|++++|.+. .+|..+ ..++
T Consensus 271 --~-------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 271 --P-------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp --C-------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred --c-------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 0 0011223344555555555544321 1222334567888888888876 455544 4677
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc--hhhhcCCCCcEEEc
Q 040297 391 YLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP--NWINILPQLSSLLL 468 (773)
Q Consensus 391 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L 468 (773)
+|+.|++++|.+.+..+.. +..+..+++|++|++++|++++..+ ..+..+++|++|++
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~--------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKN--------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394 (549)
T ss_dssp TCCEEECCSSCCCHHHHHH--------------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEEC
T ss_pred cccEEEccCCccccccccc--------------------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEEC
Confidence 7777777777765432210 1123455666667777666664322 34667777777777
Q ss_pred cCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcc
Q 040297 469 GNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEE 548 (773)
Q Consensus 469 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (773)
++|+++ .+|..+..+++|++|++++|++++ +|..
T Consensus 395 s~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~-------------------------------------------- 428 (549)
T 2z81_A 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC-------------------------------------------- 428 (549)
T ss_dssp TTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT--------------------------------------------
T ss_pred CCCCCc-cCChhhcccccccEEECCCCCccc-ccch--------------------------------------------
Confidence 777777 566677777888888888887752 2211
Q ss_pred eEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc
Q 040297 549 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 549 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
.+++|+.||+++|++++.+ +.+++|++|+|++|+++ .+|. ...+++|+.|||++|+++
T Consensus 429 ----------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 429 ----------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp ----------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ----------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 1237888899999888643 46788999999999998 6776 467899999999999999
Q ss_pred ccCCcccccCCCCCEEEccCCcccccCC
Q 040297 629 GKIPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 629 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
+.+|..+..+++|+.|++++|++++..|
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8888889999999999999999988776
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=438.71 Aligned_cols=380 Identities=21% Similarity=0.259 Sum_probs=265.1
Q ss_pred CcCccCCchhHhhCCCCCcEEEccCCccCc-----------------cCchhhh--CCCCCcEEEeecccCCCccchhHh
Q 040297 230 NFFQGHIPVEIGTYLPGLMDLNLSRNAFNG-----------------SIPSSFA--DMKMLERLDISYNQLTGEIPERMA 290 (773)
Q Consensus 230 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~ 290 (773)
|.+++ +|..+.. +++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..+.
T Consensus 435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 45554 5555443 5566666666666655 2555555 666666666666666666664443
Q ss_pred hcCCCccEEEcccCc-CCC-cCcccccC-------CCCCcEEEcccccCCccccc--cccCCCCCCeeeCcCCcCCCCcc
Q 040297 291 TGCFLLEILALSNNN-LQG-HIFSKKFN-------LTNLMRLQLDGNNFTGEISD--SLSNCRLLAGLYLSDNHLSGRIP 359 (773)
Q Consensus 291 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~ 359 (773)
.+++|+.|++++|+ +++ .+|..+.. +++|++|++++|+++ .+|. .++.+++|+.|++++|.++ .+|
T Consensus 513 -~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 513 -DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp -GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred -CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 36666666666665 555 44544333 347777777777777 5666 6777777777777777776 555
Q ss_pred hhhcCCCCCcEEEcccCcCCCCccccccCCCC-CcEEEccCCCCCCCCCCCCC-C--CceeEEECCCccccccchhhh--
Q 040297 360 RWLGNLSALEDIRMSNNNLEGPIPIEFCQLDY-LTILDLSNNAIFGTLPSCFS-P--AFIEQVHLSKNKIEGQLESII-- 433 (773)
Q Consensus 360 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~-~--~~L~~L~l~~n~l~~~~~~~~-- 433 (773)
.++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+. . ++|+.|++++|.+.+.+|...
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 6677777777777777776 56666777776 777777777776 4454443 2 337777777777766554322
Q ss_pred -c--CCCCeeEEeCCCCccccccchh-hhcCCCCcEEEccCccccccCcccccC--------CCCCCEEEccCCcCCCcC
Q 040297 434 -H--DSPYLVTLDLSYNRFHGSIPNW-INILPQLSSLLLGNNYIEGEIPVQLCE--------LKEVRLIDLSHNNLSGYI 501 (773)
Q Consensus 434 -~--~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~ 501 (773)
. .+++|+.|++++|+++ .+|.. +..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred hccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 1 3357888888888888 44544 447788888888888887 45544333 238999999999887 56
Q ss_pred cchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc
Q 040297 502 PACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG 581 (773)
Q Consensus 502 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 581 (773)
|..+.. ..+++|+.|+|++|++++
T Consensus 744 p~~l~~--------------------------------------------------------~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 744 SDDFRA--------------------------------------------------------TTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CGGGST--------------------------------------------------------TTCTTCCEEECCSSCCSS
T ss_pred hHHhhh--------------------------------------------------------ccCCCcCEEEeCCCCCCc
Confidence 655431 014588899999999986
Q ss_pred cCChhhhccCCCCeEeCCC------CcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccC
Q 040297 582 EIPTQIGYLTRIHALNLSH------NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKI 655 (773)
Q Consensus 582 ~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 655 (773)
+|..++.+++|+.|+|++ |++.+.+|..|.++++|+.|+|++|++ +.+|..+. ++|+.||+++|++....
T Consensus 768 -lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 768 -FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp -CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred -cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 788888999999999976 888999999999999999999999999 78888866 69999999999998877
Q ss_pred CCCCcccccCCcCcccCCCCCC--CCC
Q 040297 656 PDRVAQFSTFEEDSYEGNPFLC--GWP 680 (773)
Q Consensus 656 p~~~~~~~~l~~~~l~~Np~lC--~~~ 680 (773)
+..+..........+.+|+..| +|+
T Consensus 844 ~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 844 VTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp CGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred hHHccccccchheeecCCCccccCCCC
Confidence 7665555556667788888766 665
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-48 Score=442.25 Aligned_cols=458 Identities=19% Similarity=0.232 Sum_probs=221.7
Q ss_pred cccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCC------cc------ccchhHhhcCCCCCEEEccCCcCccCCccC
Q 040297 148 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL------SG------NFPNWLVENNTNLETLLLANNSLFGSFRMP 215 (773)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l------~~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (773)
+++.|+++++.+.|.+|..++++++|++|+|++|.+ .+ .+|... +..|+ +++++|.+.+..+..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence 666777777777777777777777777777777654 22 233322 22333 444444444433333
Q ss_pred ccC-CCCcCEEEccCCcCccCCchhHhhCCCCCcEEEcc--CCccCccCchhhhCCCCCcEEEeecccCCCc--------
Q 040297 216 IHS-YQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS--RNAFNGSIPSSFADMKMLERLDISYNQLTGE-------- 284 (773)
Q Consensus 216 ~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-------- 284 (773)
+.. +..+..+++....+.. .....++.+.+. .|++++ +|.+++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred HHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 221 0111111111000000 000011111111 344444 444555555555555555555532
Q ss_pred ---------cchhHh-hcCCCccEEEcccCcCCCcCcccccCCCCCcEEEccccc-CCc-cccccccCC------CCCCe
Q 040297 285 ---------IPERMA-TGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNN-FTG-EISDSLSNC------RLLAG 346 (773)
Q Consensus 285 ---------~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~ 346 (773)
+|..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|+.
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 444432 124555555555555555555555555555555555554 444 444444443 45555
Q ss_pred eeCcCCcCCCCcch--hhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCC-CCCc-eeEEECCC
Q 040297 347 LYLSDNHLSGRIPR--WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF-SPAF-IEQVHLSK 422 (773)
Q Consensus 347 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~-L~~L~l~~ 422 (773)
|++++|.++ .+|. .++.+++|++|++++|.+.|.+| .+..+++|+.|++++|.+. .+|..+ .+++ |+.|++++
T Consensus 310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 555555555 4444 45555555555555555554444 4455555555555555554 222222 2344 55555555
Q ss_pred ccccccchhhhcCCC--CeeEEeCCCCccccccchhhh-------cCCCCcEEEccCccccccCcccccCCCCCCEEEcc
Q 040297 423 NKIEGQLESIIHDSP--YLVTLDLSYNRFHGSIPNWIN-------ILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLS 493 (773)
Q Consensus 423 n~l~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 493 (773)
|.++ .+|..+...+ +|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence 5554 3333333322 455555555555555555444 44555555555555553222233445555555555
Q ss_pred CCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEe
Q 040297 494 HNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGID 573 (773)
Q Consensus 494 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 573 (773)
+|+++ .+|........ ...+.+++|+.|+
T Consensus 466 ~N~l~-~i~~~~~~~~~--------------------------------------------------~~~~~l~~L~~L~ 494 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDEN--------------------------------------------------ENFKNTYLLTSID 494 (636)
T ss_dssp SSCCS-BCCSSSSEETT--------------------------------------------------EECTTGGGCCEEE
T ss_pred CCCCC-CcCHHHhcccc--------------------------------------------------ccccccCCccEEE
Confidence 55555 34432211000 0001123555566
Q ss_pred cccCcCcccCChhhh--ccCCCCeEeCCCCcCCCCCccccccCccCCeeeC------ccccCcccCCcccccCCCCCEEE
Q 040297 574 LSCNKLTGEIPTQIG--YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL------SYNLLHGKIPSQLTVLNTLAVFK 645 (773)
Q Consensus 574 Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL------s~N~l~~~~p~~l~~l~~L~~L~ 645 (773)
|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+| ++|++.+.+|..+..+++|+.|+
T Consensus 495 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp CCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 6666655 4555554 55566666666666654 5555555666666665 34555556666666666666666
Q ss_pred ccCCcccccCCCCCcccccCCcCcccCCCCCC
Q 040297 646 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 646 ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
+++|++ +.+|..+. ++++.+++++||+.|
T Consensus 573 Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 573 IGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 666666 44554322 455666666666555
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-48 Score=442.58 Aligned_cols=429 Identities=20% Similarity=0.247 Sum_probs=348.6
Q ss_pred CCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCc------c------CCccCccCCCCcCEEEccCCcCccCCch
Q 040297 171 HDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLF------G------SFRMPIHSYQKLAILDVSKNFFQGHIPV 238 (773)
Q Consensus 171 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~------~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 238 (773)
.+++.|+|+++.+.|.+|+.+ +++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+.+|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 468888999999988888775 78899999999888652 1 111111 33455 66666666655554
Q ss_pred hHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEe--ecccCCCccchhHhhcCCCccEEEcccCcCCCc-------
Q 040297 239 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI--SYNQLTGEIPERMATGCFLLEILALSNNNLQGH------- 309 (773)
Q Consensus 239 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~------- 309 (773)
.+...+..+..+++....+.. .....++.+.+ .+|++++ +|..+. .+++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWE 228 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred hHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCcccccccccccc
Confidence 443322223333333222211 11122333333 3578886 998765 599999999999999985
Q ss_pred ----------Cccccc--CCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCc-CCC-CcchhhcCC------CCCc
Q 040297 310 ----------IFSKKF--NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH-LSG-RIPRWLGNL------SALE 369 (773)
Q Consensus 310 ----------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~ 369 (773)
+|..+. ++++|++|++++|++.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|+
T Consensus 229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence 888888 99999999999999999999999999999999999998 998 789888876 9999
Q ss_pred EEEcccCcCCCCccc--cccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCC-eeEEeCCC
Q 040297 370 DIRMSNNNLEGPIPI--EFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPY-LVTLDLSY 446 (773)
Q Consensus 370 ~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~ 446 (773)
+|++++|.++ .+|. .+..+++|+.|++++|.+.|.+|....+++|+.|++++|.++ .+|..+..+++ |++|++++
T Consensus 309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 9999999999 7888 899999999999999999988884444789999999999999 66777899999 99999999
Q ss_pred CccccccchhhhcCC--CCcEEEccCccccccCccccc-------CCCCCCEEEccCCcCCCcCcchhhccCcCccccCC
Q 040297 447 NRFHGSIPNWINILP--QLSSLLLGNNYIEGEIPVQLC-------ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE 517 (773)
Q Consensus 447 n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~ 517 (773)
|+++ .+|..+...+ +|+.|++++|++++..|..+. .+++|+.|++++|+++ .+|..+..
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~---------- 454 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFS---------- 454 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHH----------
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHc----------
Confidence 9999 7888777654 999999999999999998888 8889999999999998 45554331
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhc-c------
Q 040297 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY-L------ 590 (773)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l------ 590 (773)
.+++|+.|+|++|+++ .+|..+.. .
T Consensus 455 -----------------------------------------------~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 455 -----------------------------------------------TGSPLSSINLMGNMLT-EIPKNSLKDENENFKN 486 (636)
T ss_dssp -----------------------------------------------TTCCCSEEECCSSCCS-BCCSSSSEETTEECTT
T ss_pred -----------------------------------------------cCCCCCEEECCCCCCC-CcCHHHhccccccccc
Confidence 1358999999999999 66654433 3
Q ss_pred -CCCCeEeCCCCcCCCCCccccc--cCccCCeeeCccccCcccCCcccccCCCCCEEEc------cCCcccccCCCCCcc
Q 040297 591 -TRIHALNLSHNNLTGTIPTTFS--NLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV------AYNNLSGKIPDRVAQ 661 (773)
Q Consensus 591 -~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l------s~N~l~~~~p~~~~~ 661 (773)
++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 29999999999999 7888887 99999999999999998 8999999999999999 568899999999999
Q ss_pred cccCCcCcccCCCC
Q 040297 662 FSTFEEDSYEGNPF 675 (773)
Q Consensus 662 ~~~l~~~~l~~Np~ 675 (773)
+++++.+++++|..
T Consensus 565 l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 565 CPSLTQLQIGSNDI 578 (636)
T ss_dssp CSSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcC
Confidence 99999999999987
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-46 Score=421.23 Aligned_cols=456 Identities=20% Similarity=0.158 Sum_probs=375.6
Q ss_pred cEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccC
Q 040297 150 TSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSK 229 (773)
Q Consensus 150 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 229 (773)
+.+++++|.+. .+|..+. ++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 46888888887 4676655 78999999999998665555 58899999999999999988888999999999999999
Q ss_pred CcCccCCchhHhhCCCCCcEEEccCCccCc-cCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCc--cEEEcccCcC
Q 040297 230 NFFQGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLL--EILALSNNNL 306 (773)
Q Consensus 230 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l 306 (773)
|.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| +.|++++|.+
T Consensus 79 N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred Ccee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence 9998 78876 48899999999999987 478899999999999999999874 223457778 9999999999
Q ss_pred --CCcCcccccCCC-CCcEEEcccccCCcccc-ccccCCCCCCeeeCcCCc-------CCCCcchhhcCCCCCcEEEccc
Q 040297 307 --QGHIFSKKFNLT-NLMRLQLDGNNFTGEIS-DSLSNCRLLAGLYLSDNH-------LSGRIPRWLGNLSALEDIRMSN 375 (773)
Q Consensus 307 --~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~ 375 (773)
.+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.+++++|. +.+.+| .+..+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 777777766655 34467788888876554 467789999999999987 555555 688899999999999
Q ss_pred CcCCCCcccccc---CCCCCcEEEccCCCCCCCCCCCC------CCCceeEEECCCccccccchhhhcCC---CCeeEEe
Q 040297 376 NNLEGPIPIEFC---QLDYLTILDLSNNAIFGTLPSCF------SPAFIEQVHLSKNKIEGQLESIIHDS---PYLVTLD 443 (773)
Q Consensus 376 n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~ 443 (773)
|.+.+..+..+. ..++|+.|++++|.+.+.+|..+ .++.|+.+++++|.+ ......+..+ .+|+.|+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 988754332221 24689999999999998777654 378999999999998 3332444433 6799999
Q ss_pred CCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCC--cCcchhhccCcCccccCCCCCC
Q 040297 444 LSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG--YIPACLVYTSLGEDYHEEGPPT 521 (773)
Q Consensus 444 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~~~~~~~~~~~~ 521 (773)
+++|.+.... .+..+++|++|++++|++++..|..+..+++|+.|++++|++++ .+|..+..
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-------------- 372 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-------------- 372 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--------------
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--------------
Confidence 9999987432 12678999999999999999899999999999999999999986 44444433
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChh-hhccCCCCeEeCCC
Q 040297 522 SIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ-IGYLTRIHALNLSH 600 (773)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~ 600 (773)
+++|+.||+++|++++.+|.. +..+++|++|++++
T Consensus 373 --------------------------------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 373 --------------------------------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred --------------------------------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 458999999999999867754 88899999999999
Q ss_pred CcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 601 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 601 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
|.+++..|..+. ++|+.||+++|+++ .+|..+..+++|+.|++++|++++..+..+..++.++.+++++||+.|+|+
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999988887765 79999999999999 788888899999999999999996444447889999999999999999997
Q ss_pred CC
Q 040297 681 LS 682 (773)
Q Consensus 681 l~ 682 (773)
+.
T Consensus 486 ~~ 487 (520)
T 2z7x_B 486 RI 487 (520)
T ss_dssp HH
T ss_pred ch
Confidence 53
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-45 Score=409.81 Aligned_cols=461 Identities=18% Similarity=0.146 Sum_probs=254.0
Q ss_pred CEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeC
Q 040297 18 KTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDM 97 (773)
Q Consensus 18 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~L 97 (773)
++||+++|+++ .+|. .+. ++|++|+|++|.+++. .|..|.++++|++|++++|++++..|. .|+++++|++|++
T Consensus 3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEEC
T ss_pred ceEecCCCCcc-cccc-ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEec
Confidence 57999999998 7884 454 8999999999999876 567899999999999999999865555 7888888888888
Q ss_pred cchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEE
Q 040297 98 GWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNAD 177 (773)
Q Consensus 98 s~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 177 (773)
+ +| .+. . +|.. .+++|++|+
T Consensus 77 s-------~N-~l~---------------------------------------~-----------lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 77 S-------HN-KLV---------------------------------------K-----------ISCH--PTVNLKHLD 96 (520)
T ss_dssp C-------SS-CCC---------------------------------------E-----------EECC--CCCCCSEEE
T ss_pred C-------CC-cee---------------------------------------e-----------cCcc--ccCCccEEe
Confidence 7 53 111 0 1111 456788888
Q ss_pred CCCCCCcc-ccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCc--CEEEccCCcC--ccCCchhHhhCCC-CCcEEE
Q 040297 178 LSHLNLSG-NFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKL--AILDVSKNFF--QGHIPVEIGTYLP-GLMDLN 251 (773)
Q Consensus 178 L~~~~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~~l~-~L~~L~ 251 (773)
+++|.+++ .+|..+ +++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+.. +. ....++
T Consensus 97 L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~-l~~~~l~l~ 171 (520)
T 2z7x_B 97 LSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD-FNTESLHIV 171 (520)
T ss_dssp CCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT-CCEEEEEEE
T ss_pred ccCCccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc-cccceEEEE
Confidence 88888775 355553 677788888888777754 234555555 7777777766 4444443322 11 122445
Q ss_pred ccCCccCccCch-hhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccC
Q 040297 252 LSRNAFNGSIPS-SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNF 330 (773)
Q Consensus 252 L~~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 330 (773)
+++|.+.+.++. .+.++++|+.|++++|........ +.+.++ .+..+++|+.|++++|.+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~------------------~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY------------------FLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH------------------HHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccce------------------eecchh-hhccccchhhcccccccc
Confidence 555555443332 445556666666666541000000 222222 334444555555555444
Q ss_pred Ccccccccc---CCCCCCeeeCcCCcCCCCcchhh-----cCCCCCcEEEcccCcCCCCcc-ccccCC---CCCcEEEcc
Q 040297 331 TGEISDSLS---NCRLLAGLYLSDNHLSGRIPRWL-----GNLSALEDIRMSNNNLEGPIP-IEFCQL---DYLTILDLS 398 (773)
Q Consensus 331 ~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L~ 398 (773)
++..+..+. ..++|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 432111110 12355555555555555555544 5556666666666665 233 233322 456666666
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccc--c
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEG--E 476 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~ 476 (773)
+|.+..... +..+++|++|++++|++++..|.+++.+++|++|++++|++++ .
T Consensus 311 ~n~l~~~~~-------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 311 GTRMVHMLC-------------------------PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp SSCCCCCCC-------------------------CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred CCccccccc-------------------------hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 665532210 0223344444444444444344444444444444444444443 2
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
+|..+..+++|++|++++|++++.+|....
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~-------------------------------------------------- 395 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDC-------------------------------------------------- 395 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSC--------------------------------------------------
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchh--------------------------------------------------
Confidence 233444455555555555554443332100
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 636 (773)
..+++|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|+.|||++|+++...+..+.
T Consensus 396 -------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 396 -------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp -------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence 0023455555555555555544443 45666666666666 5555555666666666666666632222366
Q ss_pred cCCCCCEEEccCCcccccC
Q 040297 637 VLNTLAVFKVAYNNLSGKI 655 (773)
Q Consensus 637 ~l~~L~~L~ls~N~l~~~~ 655 (773)
.+++|+.|++++|++++..
T Consensus 466 ~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TCTTCCEEECCSSCBCCCH
T ss_pred cCCcccEEECcCCCCcccC
Confidence 6666666666666665543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-44 Score=416.08 Aligned_cols=500 Identities=16% Similarity=0.154 Sum_probs=277.7
Q ss_pred CCCCEEeCCCCCCCCCccchhhhcCCCCcEEEC-CCcccccccChhhhcCCCCCcEEeCcchhhccCCCcccccccCccc
Q 040297 40 TNLEELILDKSDLHVSQLLSSIASFTSLKYLSM-QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEP 118 (773)
Q Consensus 40 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l-~~n~~~~~i~~~~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~ 118 (773)
.+++.|+|+++.+.+. +|+.+++|++|++|+| ++|.+.|..+.........+....+.. +.......+....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~--lr~~~~~~~l~~~~~-- 397 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR--IRMHYKKMFLDYDQR-- 397 (876)
T ss_dssp SCEEEEECTTTCCEEE-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHH--HHTHHHHHHTCCCGG--
T ss_pred CCEEEEECccCCCCCc-CchHHhccccceEeeecccccccccccccccccccccchhHHHH--HHHhhhhhhhccCcc--
Confidence 5788888888888887 8888888888888888 788887764431111000111000000 000000000000000
Q ss_pred ccCCCCCcEEecccccccccccC-CCCCCccccEEEccC--CCCCCCcChhhcCCCCCCEEECCCCCCcc----------
Q 040297 119 LFNLSKLKTFDGEIWAETESHYN-SVTPKFQLTSISLSG--YIDGGTFPKFLYHQHDLKNADLSHLNLSG---------- 185 (773)
Q Consensus 119 l~~l~~L~~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~--~~~~~~~~~~l~~~~~L~~L~L~~~~l~~---------- 185 (773)
.++..+....+. ..+.... .......++.+.+.. |.+.+ +|..++++++|++|+|++|.+++
T Consensus 398 -~~~s~l~~~~l~---~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 398 -LNLSDLLQDAIN---RNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472 (876)
T ss_dssp -GGSCHHHHHHHH---TCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred -hhhhHHHHHHhh---hCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccc
Confidence 000000000000 0000000 000111222222222 44555 66667777777777777777666
Q ss_pred -------ccchhH-hhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCc-Ccc-CCchhHhh------CCCCCcE
Q 040297 186 -------NFPNWL-VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNF-FQG-HIPVEIGT------YLPGLMD 249 (773)
Q Consensus 186 -------~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~------~l~~L~~ 249 (773)
.+|..+ |.++++|++|+|++|.+.+.+|..+..+++|++|++++|+ ++| .+|..+.. .+++|++
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 255543 2256666666666666556566556666666666666665 555 45554432 1235556
Q ss_pred EEccCCccCccCch--hhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCC-CcEEEcc
Q 040297 250 LNLSRNAFNGSIPS--SFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTN-LMRLQLD 326 (773)
Q Consensus 250 L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~ 326 (773)
|++++|.++ .+|. .++++++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|+++
T Consensus 553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence 666655555 4554 5555555666666555555 555 2233555555555555555 34444555555 5555555
Q ss_pred cccCCccccccccCCCC--CCeeeCcCCcCCCCcchhh---c--CCCCCcEEEcccCcCCCCccccccCCCCCcEEEccC
Q 040297 327 GNNFTGEISDSLSNCRL--LAGLYLSDNHLSGRIPRWL---G--NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSN 399 (773)
Q Consensus 327 ~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 399 (773)
+|.++ .+|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 55555 44444444332 5555555555554433211 1 123455555555555522222223455555555555
Q ss_pred CCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhh--cCCCCcEEEccCccccccC
Q 040297 400 NAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN--ILPQLSSLLLGNNYIEGEI 477 (773)
Q Consensus 400 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~ 477 (773)
|.+....+..+... ...+.++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +
T Consensus 707 N~L~~ip~~~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 707 NLMTSIPENSLKPK----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp CCCSCCCTTSSSCT----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred CcCCccChHHhccc----------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 55442221111100 001123448899999999888 6777776 88999999999999986 6
Q ss_pred cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCc
Q 040297 478 PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557 (773)
Q Consensus 478 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (773)
|..+..+++|+.|+|++|+
T Consensus 769 p~~l~~L~~L~~L~Ls~N~------------------------------------------------------------- 787 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQR------------------------------------------------------------- 787 (876)
T ss_dssp CCGGGGCTTCCEEECCCCB-------------------------------------------------------------
T ss_pred chhhhcCCCCCEEECCCCC-------------------------------------------------------------
Confidence 8888888999999988874
Q ss_pred cccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCccccc
Q 040297 558 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 558 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
++++|++.+.+|..++.+++|+.|+|++|.+ +.+|..+. ++|+.|||++|++....+..+..
T Consensus 788 ---------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 788 ---------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp ---------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred ---------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 2456777778888888888888888888888 57777765 58888888888888777666666
Q ss_pred CCCCCEEEccCCccc
Q 040297 638 LNTLAVFKVAYNNLS 652 (773)
Q Consensus 638 l~~L~~L~ls~N~l~ 652 (773)
...+..+.+.+|++.
T Consensus 850 ~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 850 YIEAGMYVLLYDKTQ 864 (876)
T ss_dssp HHHTTCCEEECCTTS
T ss_pred cccchheeecCCCcc
Confidence 666667777777654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=395.12 Aligned_cols=458 Identities=19% Similarity=0.152 Sum_probs=357.2
Q ss_pred ccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEcc
Q 040297 149 LTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVS 228 (773)
Q Consensus 149 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 228 (773)
.+.++++++.+.+ +|..+. ++|++|++++|.+++..|.. +.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGG-TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhh-hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3788888888775 666554 78999999999998655544 5889999999999999998888889999999999999
Q ss_pred CCcCccCCchhHhhCCCCCcEEEccCCccCcc-CchhhhCCCCCcEEEeecccCCCccchhHhhcCCCc--cEEEcccCc
Q 040297 229 KNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGS-IPSSFADMKMLERLDISYNQLTGEIPERMATGCFLL--EILALSNNN 305 (773)
Q Consensus 229 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~L~~n~ 305 (773)
+|.++ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+++. . +..+++| +.|++++|.
T Consensus 109 ~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 109 HNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEESS
T ss_pred CCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeeccc
Confidence 99998 77766 488999999999999873 468899999999999999998742 2 2335556 999999999
Q ss_pred C--CCcCcccccCCC-CCcEEEcccccCCccccc-cccCCCCCCeeeCcCCcCC----CCcchhhcCCCCCcEEEcccCc
Q 040297 306 L--QGHIFSKKFNLT-NLMRLQLDGNNFTGEISD-SLSNCRLLAGLYLSDNHLS----GRIPRWLGNLSALEDIRMSNNN 377 (773)
Q Consensus 306 l--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~ 377 (773)
+ ++..+..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|... ......+..+++|+.+++.++.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 9 777777776654 122567888888765543 4667889999999988521 0223457788899999988887
Q ss_pred CCCCcccc---ccCCCCCcEEEccCCCCCCCCCCCC------CCCceeEEECCCccccccchhhhc---CCCCeeEEeCC
Q 040297 378 LEGPIPIE---FCQLDYLTILDLSNNAIFGTLPSCF------SPAFIEQVHLSKNKIEGQLESIIH---DSPYLVTLDLS 445 (773)
Q Consensus 378 l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~Ls 445 (773)
+.+..... ....++|+.|++++|.+.+.+|..+ .+..|+.+++..+.+ ......+. ...+|++|+++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEE
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEcc
Confidence 65432111 1234589999999999988777654 245566666666665 22222222 22679999999
Q ss_pred CCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCc--CcchhhccCcCccccCCCCCCcc
Q 040297 446 YNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY--IPACLVYTSLGEDYHEEGPPTSI 523 (773)
Q Consensus 446 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~~~~~~~~~~~~~~~~ 523 (773)
+|.+.... ....+++|++|++++|++++..|..+..+++|+.|++++|++++. +|..+..
T Consensus 340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---------------- 401 (562)
T 3a79_B 340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN---------------- 401 (562)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT----------------
T ss_pred CCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC----------------
Confidence 99886432 125789999999999999988899999999999999999999853 2222322
Q ss_pred ccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCCh-hhhccCCCCeEeCCCCc
Q 040297 524 WCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT-QIGYLTRIHALNLSHNN 602 (773)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~ 602 (773)
+++|+.|++++|++++.+|. .+..+++|++|+|++|.
T Consensus 402 ------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 402 ------------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp ------------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred ------------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 45899999999999985665 58889999999999999
Q ss_pred CCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 603 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 603 l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
+++.+|..+. ++|+.|||++|+++ .+|..+..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|+..
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 9988777654 79999999999998 67777779999999999999999654444788999999999999999998753
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=374.13 Aligned_cols=381 Identities=21% Similarity=0.214 Sum_probs=281.9
Q ss_pred CEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcc
Q 040297 223 AILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALS 302 (773)
Q Consensus 223 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 302 (773)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45677777776 6775 2 36899999999999888888899999999999999988777777667778889999999
Q ss_pred cCcCCCcCcccccCCCCCcEEEcccccCCcccccc--ccCCCCCCeeeCcCCcCCCCcchh-hcCCCCCcEEEcccCcCC
Q 040297 303 NNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDS--LSNCRLLAGLYLSDNHLSGRIPRW-LGNLSALEDIRMSNNNLE 379 (773)
Q Consensus 303 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~ 379 (773)
+|.+++..|..+.++++|++|++++|++++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99888888888888899999999999888755544 788888999999988888776765 788888888888888888
Q ss_pred CCccccccCC--CCCcEEEccCCCCCCCCCCCC---------CCCceeEEECCCccccccchhhhcCC---CCeeEEeCC
Q 040297 380 GPIPIEFCQL--DYLTILDLSNNAIFGTLPSCF---------SPAFIEQVHLSKNKIEGQLESIIHDS---PYLVTLDLS 445 (773)
Q Consensus 380 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~Ls 445 (773)
+..+..+..+ .+|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+..+..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777777655 678888888888776544322 23556666666666666555544332 556666666
Q ss_pred CCccccccchhhhcCCCCcEEEccCccccccCccccc--CCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCcc
Q 040297 446 YNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLC--ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSI 523 (773)
Q Consensus 446 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 523 (773)
+|...+... ..+.+.+..+..+. ..++|+.|++++|++++..|..+..
T Consensus 248 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------------- 297 (455)
T 3v47_A 248 NSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH---------------- 297 (455)
T ss_dssp TCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT----------------
T ss_pred ccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhccc----------------
Confidence 665443211 01111111111222 2356778888888777666655433
Q ss_pred ccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcC
Q 040297 524 WCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL 603 (773)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 603 (773)
+++|++|++++|++++..|..|+.+++|++|+|++|.+
T Consensus 298 ------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 298 ------------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp ------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 34777888888888877777788888888888888888
Q ss_pred CCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 604 TGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 604 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
++..|..|+++++|+.|||++|++++..|..+..+++|++|++++|++++..+..+..+++++.+++++||+.|+||
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 87777888888888888888888887778888888888888888888887777666777888888888888888886
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=382.29 Aligned_cols=459 Identities=17% Similarity=0.173 Sum_probs=221.7
Q ss_pred CCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEe
Q 040297 17 LKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLD 96 (773)
Q Consensus 17 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~ 96 (773)
.+++|+++|+++ .+|. .+. ++|++|+|++|.+++. .|..|.++++|++|++++|.+++..|. .|.++++|++|+
T Consensus 33 ~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ 106 (562)
T 3a79_B 33 ESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLD 106 (562)
T ss_dssp CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEE
T ss_pred CcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEE
Confidence 356666666665 4553 232 5666666666666554 345566666666666666666533333 555566666666
Q ss_pred CcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEE
Q 040297 97 MGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNA 176 (773)
Q Consensus 97 Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 176 (773)
++ +|. +. .+|.. .+++|++|
T Consensus 107 Ls-------~N~--------------------------------------------------l~-~lp~~--~l~~L~~L 126 (562)
T 3a79_B 107 VS-------HNR--------------------------------------------------LQ-NISCC--PMASLRHL 126 (562)
T ss_dssp CT-------TSC--------------------------------------------------CC-EECSC--CCTTCSEE
T ss_pred CC-------CCc--------------------------------------------------CC-ccCcc--ccccCCEE
Confidence 55 321 11 11111 34556666
Q ss_pred ECCCCCCcc-ccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCc--CEEEccCCcC--ccCCchhHhhCCC-CCcEE
Q 040297 177 DLSHLNLSG-NFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKL--AILDVSKNFF--QGHIPVEIGTYLP-GLMDL 250 (773)
Q Consensus 177 ~L~~~~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~~~~~l~-~L~~L 250 (773)
++++|.+.+ .+|.. ++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+.. +. ....+
T Consensus 127 ~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l 201 (562)
T 3a79_B 127 DLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHL 201 (562)
T ss_dssp ECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEE
T ss_pred ECCCCCccccCchHh-hcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc-cCcceEEE
Confidence 666666654 22333 35666666666666665442 23333333 5666665555 4333333221 11 11133
Q ss_pred EccCCccCccCch-hhhCCCCCcEEEeecccCCC-ccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccc
Q 040297 251 NLSRNAFNGSIPS-SFADMKMLERLDISYNQLTG-EIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 328 (773)
Q Consensus 251 ~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 328 (773)
++++|.+.+.++. .+..+++|+.|++++|...- .+ .+ ....+..+++|+.+++.++
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l---------------------~~-~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL---------------------MT-FLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH---------------------HH-HHHHHHSCSSCEEEEEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchH---------------------HH-HHHHHhccCcceEEEecCC
Confidence 4444444433322 23344455555555543100 00 00 0112333444444444444
Q ss_pred cCCccc----cccccCCCCCCeeeCcCCcCCCCcchhh-----cCCCCCcEEEcccCcCCCCcc-cccc---CCCCCcEE
Q 040297 329 NFTGEI----SDSLSNCRLLAGLYLSDNHLSGRIPRWL-----GNLSALEDIRMSNNNLEGPIP-IEFC---QLDYLTIL 395 (773)
Q Consensus 329 ~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~---~l~~L~~L 395 (773)
.+.+.. +.. ...++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|+.|
T Consensus 260 ~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 260 ETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred cCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 333211 111 112345555555555544444433 3344444444444444 122 1111 12445566
Q ss_pred EccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccc
Q 040297 396 DLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEG 475 (773)
Q Consensus 396 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 475 (773)
++++|.+..... ...+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 337 ~l~~n~~~~~~~-------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 337 SISDTPFIHMVC-------------------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp EEESSCCCCCCC-------------------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred EccCCCcccccC-------------------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 666555432110 1234445555555555554445555555555555555555553
Q ss_pred c--CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEE
Q 040297 476 E--IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFT 553 (773)
Q Consensus 476 ~--~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (773)
. +|..+..+++|+.|++++|++++.+|....
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----------------------------------------------- 424 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC----------------------------------------------- 424 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-----------------------------------------------
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhh-----------------------------------------------
Confidence 2 233455555566666666655543332210
Q ss_pred ecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCc
Q 040297 554 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPS 633 (773)
Q Consensus 554 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 633 (773)
..+++|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+.++++|+.|||++|++++..+.
T Consensus 425 ----------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 425 ----------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp ----------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred ----------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 0123566666666666555554443 46666666666666 4555555666777777777776633333
Q ss_pred ccccCCCCCEEEccCCcccccCC
Q 040297 634 QLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 634 ~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
.+..+++|+.|++++|++.+..|
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp STTTCTTCCCEECCSCCBCCCHH
T ss_pred HHhcCCCCCEEEecCCCcCCCcc
Confidence 36666777777777777665444
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=375.85 Aligned_cols=520 Identities=17% Similarity=0.141 Sum_probs=351.1
Q ss_pred CcccccCCCCCCCCEEeCCCCCCccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChh
Q 040297 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQ 84 (773)
Q Consensus 5 ~~l~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~ 84 (773)
.++|..+. +++++|||++|.|+ .+++.+|.++++|++|||++|+++.. .|.+|.++++|++|+|++|+++ .+|..
T Consensus 44 ~~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~-~l~~~ 118 (635)
T 4g8a_A 44 YKIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQ-SLALG 118 (635)
T ss_dssp SSCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCC-EECGG
T ss_pred CccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCC-CCCHH
Confidence 46776654 48999999999999 78878999999999999999999875 4667999999999999999998 56766
Q ss_pred hhcCCCCCcEEeCcchhhccCCCcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCC-Cc
Q 040297 85 DFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGG-TF 163 (773)
Q Consensus 85 ~~~~l~~L~~L~Ls~~~l~l~~n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~ 163 (773)
.|.++++|++|+|+ +| .++. ++...+++++ +|++|++++|.+.+ ..
T Consensus 119 ~f~~L~~L~~L~Ls-------~N-~l~~-l~~~~~~~L~------------------------~L~~L~Ls~N~l~~~~~ 165 (635)
T 4g8a_A 119 AFSGLSSLQKLVAV-------ET-NLAS-LENFPIGHLK------------------------TLKELNVAHNLIQSFKL 165 (635)
T ss_dssp GGTTCTTCCEEECT-------TS-CCCC-STTCCCTTCT------------------------TCCEEECCSSCCCCCCC
T ss_pred HhcCCCCCCEEECC-------CC-cCCC-CChhhhhcCc------------------------ccCeeccccCccccCCC
Confidence 89999999999998 74 3332 2222344444 56667777777765 46
Q ss_pred ChhhcCCCCCCEEECCCCCCccccchhHhhcCC----CCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchh
Q 040297 164 PKFLYHQHDLKNADLSHLNLSGNFPNWLVENNT----NLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVE 239 (773)
Q Consensus 164 ~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 239 (773)
|..+..+++|++|++++|.+++..+..+ ..+. ....++++.|.+....+..+ ....++.+++.+|.....++..
T Consensus 166 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~ 243 (635)
T 4g8a_A 166 PEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKT 243 (635)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHH
T ss_pred chhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccch
Confidence 7889999999999999999987666543 3333 34578999998876555444 4456788899888766555556
Q ss_pred HhhCCCCCcEEEccCCc------cCccCchhhhCCCCCcEEEeecccCCCccc--hhHhhcCCCccEEEcccCcCCCcCc
Q 040297 240 IGTYLPGLMDLNLSRNA------FNGSIPSSFADMKMLERLDISYNQLTGEIP--ERMATGCFLLEILALSNNNLQGHIF 311 (773)
Q Consensus 240 ~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (773)
.+..++.++...+..+. +.......+..+..+...++..+....... ...+....+++.+.+.++.+....
T Consensus 244 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~- 322 (635)
T 4g8a_A 244 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK- 322 (635)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-
T ss_pred hhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-
Confidence 66667777777665432 222333445555556655555543321111 011222445555555555544322
Q ss_pred ccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCC--CccccccCC
Q 040297 312 SKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEG--PIPIEFCQL 389 (773)
Q Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l 389 (773)
.+.....++.|++.+|.+.+..+. .++.|+.+++..|...... ....+++|+.+++++|.+.. ..+..+..+
T Consensus 323 -~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 396 (635)
T 4g8a_A 323 -DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 396 (635)
T ss_dssp -GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSC
T ss_pred -ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhh
Confidence 223344555555555554432221 2344445555544443221 12234445555555444431 122223334
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc-hhhhcCCCCcEEEc
Q 040297 390 DYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP-NWINILPQLSSLLL 468 (773)
Q Consensus 390 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 468 (773)
. +++.+++..+.+... +..+..+++|+.++++.+......+ ..+..+++++.+++
T Consensus 397 ~-----------------------~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 397 I-----------------------SLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp S-----------------------CCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred h-----------------------hhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccc
Confidence 4 455555555544332 2234556677777777666554433 34666778888888
Q ss_pred cCccccccCcccccCCCCCCEEEccCCcCCC-cCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCc
Q 040297 469 GNNYIEGEIPVQLCELKEVRLIDLSHNNLSG-YIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKE 547 (773)
Q Consensus 469 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (773)
+.|.+.+..+..+..+++|+.|++++|++.+ ..|..+..
T Consensus 453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~---------------------------------------- 492 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---------------------------------------- 492 (635)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------------------------
T ss_pred cccccccccccccccchhhhhhhhhhcccccccCchhhhh----------------------------------------
Confidence 8888887777778888888888888887543 23333322
Q ss_pred ceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 548 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
+++|++|||++|++++..|..|+++++|++|+|++|+|++..|..|+++++|+.|||++|++
T Consensus 493 ------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 493 ------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp ------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred ------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 45888899999999988889999999999999999999988889999999999999999999
Q ss_pred cccCCcccccC-CCCCEEEccCCcccc
Q 040297 628 HGKIPSQLTVL-NTLAVFKVAYNNLSG 653 (773)
Q Consensus 628 ~~~~p~~l~~l-~~L~~L~ls~N~l~~ 653 (773)
++.+|+.+..+ ++|++|++++|+++.
T Consensus 555 ~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 555 MTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999888 689999999999875
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=365.36 Aligned_cols=386 Identities=20% Similarity=0.187 Sum_probs=267.7
Q ss_pred CEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEcc
Q 040297 174 KNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS 253 (773)
Q Consensus 174 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 253 (773)
+.++.+++.++ .+|. + .++|++|+|++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34566666665 5554 2 36788888888888887788888888888888888888767766666668888888888
Q ss_pred CCccCccCchhhhCCCCCcEEEeecccCCCccchh-HhhcCCCccEEEcccCcCCCcCccc-ccCCCCCcEEEcccccCC
Q 040297 254 RNAFNGSIPSSFADMKMLERLDISYNQLTGEIPER-MATGCFLLEILALSNNNLQGHIFSK-KFNLTNLMRLQLDGNNFT 331 (773)
Q Consensus 254 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~ 331 (773)
+|.+++..|..|+++++|++|++++|.+++.+|.. .+..+++|++|++++|.+.+..|.. +.++++|++|++++|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88888888888888888888888888887544442 2445778888888888888776655 677888888888888887
Q ss_pred ccccccccCC--CCCCeeeCcCCcCCCCcchhh--------cCCCCCcEEEcccCcCCCCccccccCC---CCCcEEEcc
Q 040297 332 GEISDSLSNC--RLLAGLYLSDNHLSGRIPRWL--------GNLSALEDIRMSNNNLEGPIPIEFCQL---DYLTILDLS 398 (773)
Q Consensus 332 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~ 398 (773)
+..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..|..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777666655 567778888877775443322 245667777777777766666555432 566666666
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCc
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 478 (773)
+|...+..... +.+....+..+.++ ..++|+.|++++|.+++..|
T Consensus 248 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 248 NSYNMGSSFGH-------------TNFKDPDNFTFKGL----------------------EASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp TCTTTSCCTTC-------------CSSCCCCTTTTGGG----------------------TTSCCCEEECCSSCCCEECT
T ss_pred cccccccccch-------------hhhccCcccccccc----------------------cccCceEEEecCccccccch
Confidence 66543321111 11111111111110 12456666666666665555
Q ss_pred ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcc
Q 040297 479 VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMS 558 (773)
Q Consensus 479 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (773)
..+..+++|+.|++++|++++..|..+..
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------------------------- 321 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWG--------------------------------------------------- 321 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTT---------------------------------------------------
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcC---------------------------------------------------
Confidence 56666666666666666666544444332
Q ss_pred ccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccC
Q 040297 559 YYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 638 (773)
Q Consensus 559 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 638 (773)
+++|+.|+|++|++++..|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++..+..+..+
T Consensus 322 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 322 -------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp -------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 2366777777777776667778888888888888888887778888888888888888888887777777888
Q ss_pred CCCCEEEccCCcccccCCC
Q 040297 639 NTLAVFKVAYNNLSGKIPD 657 (773)
Q Consensus 639 ~~L~~L~ls~N~l~~~~p~ 657 (773)
++|+.|++++|++++..|.
T Consensus 395 ~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTCCEEECCSSCBCCCTTT
T ss_pred CcccEEEccCCCcccCCCc
Confidence 8888888888888887775
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=351.85 Aligned_cols=402 Identities=24% Similarity=0.293 Sum_probs=200.3
Q ss_pred ccccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCC-------------CCEEEccCCcCccCCc
Q 040297 147 FQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTN-------------LETLLLANNSLFGSFR 213 (773)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~~~ 213 (773)
..+++|.+++|.+ +.+|..++++++|++|++++|.+.|.+|..+ +++++ +++|++++|.+++. |
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence 3777788888777 7778778888888888888887777777654 44443 47777777776553 2
Q ss_pred cCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcC
Q 040297 214 MPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGC 293 (773)
Q Consensus 214 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 293 (773)
. ..++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|.++ .+|. +..+
T Consensus 88 ~---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l 152 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNS 152 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred C---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCC
Confidence 2 13567777777777763 5532 3567777777777664 2221 156777777777776 4662 3456
Q ss_pred CCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEc
Q 040297 294 FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373 (773)
Q Consensus 294 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 373 (773)
++|++|++++|++++. |.. .++|++|++++|++++ +| .++.+++|+.|++++|.+++ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 7777777777777653 222 3467777777777764 44 46667777777777777664 3332 246777777
Q ss_pred ccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccccc
Q 040297 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSI 453 (773)
Q Consensus 374 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 453 (773)
++|.+. .+| .+..+++|+.|++++|.+++. |.. +++|+.|++++|.+++... ..++|++|++++|++++ +
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~~--~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~-l 292 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PDL--PPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSG-L 292 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CSC--CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSE-E
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-ccc--ccccCEEECCCCcccccCc----ccCcCCEEECcCCccCc-c
Confidence 777666 444 366677777777777766642 222 3566667777666665322 12566666666666664 1
Q ss_pred chhhhcCCCCcEEEccCccccccCcccccCC-CCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccC
Q 040297 454 PNWINILPQLSSLLLGNNYIEGEIPVQLCEL-KEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYG 532 (773)
Q Consensus 454 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (773)
|. ..++|+.|++++|++++. ..+ ++|+.|++++|++++ +|..
T Consensus 293 ~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---------------------------- 335 (454)
T 1jl5_A 293 SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---------------------------- 335 (454)
T ss_dssp SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc----------------------------
Confidence 21 124666666666666631 122 366666666666653 3321
Q ss_pred CCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCC--CCccc
Q 040297 533 SPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG--TIPTT 610 (773)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~ 610 (773)
+++|+.|++++|+++ .+|. .+++|++|++++|.+++ .+|..
T Consensus 336 ---------------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 336 ---------------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp ---------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred ---------------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 135666666666666 3454 35666666666666665 45554
Q ss_pred cccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc--cCCCCCcccccCCcCcccCCCCCC
Q 040297 611 FSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG--KIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 611 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
+++ |+.|.+.+.+|.. +++|+.|++++|++++ .+|.. +..+.+.+|...|
T Consensus 379 l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~ 430 (454)
T 1jl5_A 379 VED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD 430 (454)
T ss_dssp CCE--------EECCC-----------------------------------------------------
T ss_pred HHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence 432 2335555555543 3789999999999998 66653 4455566665544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=348.34 Aligned_cols=409 Identities=23% Similarity=0.263 Sum_probs=277.2
Q ss_pred CCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCC-------------CEEECCCCCCccccc
Q 040297 122 LSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDL-------------KNADLSHLNLSGNFP 188 (773)
Q Consensus 122 l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------------~~L~L~~~~l~~~~~ 188 (773)
.++|+.++++.... ......+....+|++|++++|.+.+.+|..++++.+| ++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 46788888774332 2222234445589999999999999999999887764 999999999985 45
Q ss_pred hhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCC
Q 040297 189 NWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 268 (773)
Q Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 268 (773)
. -.++|++|++++|.+++ +|.. +++|++|++++|.++ .+|.. .++|++|++++|.+++ +| .|+++
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 4 24789999999999987 4533 489999999999998 45431 3699999999999996 67 59999
Q ss_pred CCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeee
Q 040297 269 KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLY 348 (773)
Q Consensus 269 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 348 (773)
++|++|++++|+++ .+|.. ..+|++|++++|.+++. | .+..+++|++|++++|++++ +|... ++|++|+
T Consensus 153 ~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 153 SFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIV 221 (454)
T ss_dssp TTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEE
T ss_pred CCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEE
Confidence 99999999999998 57753 46899999999999984 4 68899999999999999985 45432 6899999
Q ss_pred CcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCcccccc
Q 040297 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQ 428 (773)
Q Consensus 349 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 428 (773)
+++|.+. .+|. ++.+++|++|++++|++.+ +|. ..++|+.|++++|.+.+ +|.. +++|+.|++++|.+++.
T Consensus 222 l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEE
T ss_pred CcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCcc
Confidence 9999998 6664 8899999999999999985 443 24899999999999987 4433 47899999999999874
Q ss_pred chhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhcc
Q 040297 429 LESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYT 508 (773)
Q Consensus 429 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 508 (773)
.. -.++|++|++++|++++ ++. ..++|++|++++|++++ +|.. +++|+.|++++|++++ +|. .
T Consensus 293 ~~----~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-~--- 355 (454)
T 1jl5_A 293 SE----LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-L--- 355 (454)
T ss_dssp SC----CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-C---
T ss_pred cC----cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-h---
Confidence 32 12689999999999985 332 12589999999999996 5543 6899999999999973 443 0
Q ss_pred CcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc--cCChh
Q 040297 509 SLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG--EIPTQ 586 (773)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~ 586 (773)
+++|+.|++++|++++ .+|..
T Consensus 356 ---------------------------------------------------------l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 356 ---------------------------------------------------------PQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCSSCCCCCTT
T ss_pred ---------------------------------------------------------hhhccEEECCCCCCCcCCCChHH
Confidence 3489999999999998 67776
Q ss_pred hhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcc--cCCcccccCCCCCEEEccCCcccccCCCC
Q 040297 587 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG--KIPSQLTVLNTLAVFKVAYNNLSGKIPDR 658 (773)
Q Consensus 587 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 658 (773)
++.+ +.|.+.+.+|.. +++|+.||+++|++++ .+|.+ ++.|.+.+|.+.+.+|..
T Consensus 379 l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 379 VEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp CCEE--------ECCC----------------------------------------------------------
T ss_pred HHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence 6543 457788888864 5889999999999997 66654 566778999988877754
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=337.58 Aligned_cols=376 Identities=18% Similarity=0.143 Sum_probs=248.5
Q ss_pred cccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEc
Q 040297 148 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDV 227 (773)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 227 (773)
.++......+...+..+..++++++|++|++++|.+++ +| . +..+++|++|++++|.+++. + +..+++|++|++
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~L 92 (457)
T 3bz5_A 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLAC 92 (457)
T ss_dssp HHHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEEC
T ss_pred HHHHHHHHhcCcCcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEEC
Confidence 33333333444445555667778888888888888875 35 3 46788888888888887764 2 677778888888
Q ss_pred cCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCC
Q 040297 228 SKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQ 307 (773)
Q Consensus 228 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 307 (773)
++|.+++ ++ +..+++|++|++++|++++. | ++.+++|++|++++|.+++ ++ +..+++|++|++++|...
T Consensus 93 s~N~l~~-~~---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 93 DSNKLTN-LD---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp CSSCCSC-CC---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCC
T ss_pred cCCCCce-ee---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcc
Confidence 8888774 43 33467788888888877753 3 6777778888888777773 43 334677777777777544
Q ss_pred CcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCcccccc
Q 040297 308 GHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC 387 (773)
Q Consensus 308 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 387 (773)
+.. .+..+++|++|++++|++++ +| ++.+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| +.
T Consensus 162 ~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~ 230 (457)
T 3bz5_A 162 TKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT 230 (457)
T ss_dssp CCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred ccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc
Confidence 433 35566777777777777765 33 56667777777777777654 25666777777777777765 33 56
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEE
Q 040297 388 QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467 (773)
Q Consensus 388 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 467 (773)
.+++|+.|++++|.+++..+. .++.|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|+
T Consensus 231 ~l~~L~~L~l~~N~l~~~~~~--~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ 292 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELD 292 (457)
T ss_dssp TCTTCSEEECCSSCCSCCCCT--TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCC
T ss_pred ccCCCCEEEeeCCcCCCcCHH--HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEE
Confidence 666677777777766654321 2345555555443 23445555555444443 23445555555
Q ss_pred ccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCc
Q 040297 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKE 547 (773)
Q Consensus 468 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (773)
+++|...+.+|. ..++|+.|++++
T Consensus 293 Ls~n~~l~~l~~---~~~~L~~L~l~~----------------------------------------------------- 316 (457)
T 3bz5_A 293 VTHNTQLYLLDC---QAAGITELDLSQ----------------------------------------------------- 316 (457)
T ss_dssp CTTCTTCCEEEC---TTCCCSCCCCTT-----------------------------------------------------
T ss_pred CCCCcccceecc---CCCcceEechhh-----------------------------------------------------
Confidence 555544444332 222333333332
Q ss_pred ceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 548 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
.++|+.|++++|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|.+
T Consensus 317 ------------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l 367 (457)
T 3bz5_A 317 ------------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNF 367 (457)
T ss_dssp ------------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSE
T ss_pred ------------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcE
Confidence 24789999999999974 3 8999999999999999996 35678889999999
Q ss_pred cccCCcccccCCCCCEEEccCCcccccCCCCC
Q 040297 628 HGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRV 659 (773)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 659 (773)
.|. ..+..|..+++++|+++|.+|..+
T Consensus 368 ~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 368 EAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp EEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred Eec-----ceeeecCccccccCcEEEEcChhH
Confidence 987 345568889999999999999753
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-36 Score=329.56 Aligned_cols=347 Identities=24% Similarity=0.323 Sum_probs=236.7
Q ss_pred cCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcE
Q 040297 194 NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 273 (773)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 273 (773)
.++++++|+++++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ ++++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 456788889988887653 3 4677888888888888887 4444 3447888888888888875544 788888888
Q ss_pred EEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCc
Q 040297 274 LDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353 (773)
Q Consensus 274 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 353 (773)
|++++|.++ .++. +..+++|++|++++|.+.+.. .+..+++|++|+++ |.+.+.. .+..+++|+.|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 888888887 4544 445778888888888777642 36677777777775 4444332 26677777777777777
Q ss_pred CCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhh
Q 040297 354 LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESII 433 (773)
Q Consensus 354 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 433 (773)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+ . ..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-----------------------~--~~l 239 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-----------------------I--GTL 239 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-----------------------C--GGG
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-----------------------c--hhh
Confidence 7643 235666777777777776665444 4556666666666665543 2 234
Q ss_pred cCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCcc
Q 040297 434 HDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED 513 (773)
Q Consensus 434 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~ 513 (773)
..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +.
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~------- 306 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS------- 306 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG-------
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc-------
Confidence 556667777777776665433 5666777777777777764433 6677777777777777764322 11
Q ss_pred ccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCC
Q 040297 514 YHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI 593 (773)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 593 (773)
.+++|+.|++++|++++..| ++.+++|
T Consensus 307 ---------------------------------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 307 ---------------------------------------------------NLKNLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp ---------------------------------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred ---------------------------------------------------CCCCCCEEECcCCcCCCchh--hccCccC
Confidence 13467777777777776554 6677778
Q ss_pred CeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccccc
Q 040297 594 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGK 654 (773)
Q Consensus 594 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 654 (773)
++|++++|.+++. ..++++++|+.|++++|++++.+| +..+++|+.|++++|++++.
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 8888888877754 357777888888888888877766 67777888888888877763
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=327.92 Aligned_cols=347 Identities=27% Similarity=0.371 Sum_probs=267.9
Q ss_pred CCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCc
Q 040297 169 HQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM 248 (773)
Q Consensus 169 ~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 248 (773)
.+++++.|++.++.+. .+|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence 4568999999999987 4664 4789999999999999987654 8899999999999999984 444 44589999
Q ss_pred EEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccc
Q 040297 249 DLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 328 (773)
Q Consensus 249 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 328 (773)
+|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|+.|+++ |.+.+.. .+.++++|++|++++|
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 99999999986543 899999999999999998 5664 4569999999997 5555443 3889999999999999
Q ss_pred cCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCC
Q 040297 329 NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408 (773)
Q Consensus 329 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 408 (773)
.+++. ..+..+++|++|++++|.+.+..| ++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence 99854 348899999999999999997665 77899999999999999854 357788899999998888765432
Q ss_pred CCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCC
Q 040297 409 CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVR 488 (773)
Q Consensus 409 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 488 (773)
+..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+
T Consensus 261 ------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 261 ------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp ------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred ------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 3345556666666666554332 5556666666666666664332 56667777
Q ss_pred EEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccccccccc
Q 040297 489 LIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTS 568 (773)
Q Consensus 489 ~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 568 (773)
.|++++|++++..| +. .+++
T Consensus 313 ~L~L~~n~l~~~~~--~~----------------------------------------------------------~l~~ 332 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VS----------------------------------------------------------SLTK 332 (466)
T ss_dssp EEECCSSCCSCCGG--GG----------------------------------------------------------GCTT
T ss_pred EEECcCCcCCCchh--hc----------------------------------------------------------cCcc
Confidence 77777777665433 11 1346
Q ss_pred ccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCccc
Q 040297 569 MSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630 (773)
Q Consensus 569 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 630 (773)
|+.|++++|++++. ..++.+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 77777777777754 457788888888888888887766 78888888888888888763
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=339.37 Aligned_cols=323 Identities=19% Similarity=0.160 Sum_probs=193.7
Q ss_pred cEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcC
Q 040297 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351 (773)
Q Consensus 272 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 351 (773)
+.++.+++.++ .+|..+ .+.++.|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 56777888887 777654 35778888888888877777788888888888888888877777788888888888888
Q ss_pred CcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccch
Q 040297 352 NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLE 430 (773)
Q Consensus 352 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~ 430 (773)
|.+++..+..|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 888766556677778888888888877776677777777777777777776655444333 4455555555555544444
Q ss_pred hhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCc
Q 040297 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSL 510 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 510 (773)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~------------------------ 225 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN------------------------ 225 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC------------------------
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc------------------------
Confidence 44444444555555444444443444444444444444444444344333333334
Q ss_pred CccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhcc
Q 040297 511 GEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYL 590 (773)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 590 (773)
|+.|++++|++++..+..+..+
T Consensus 226 ----------------------------------------------------------L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 226 ----------------------------------------------------------LTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp ----------------------------------------------------------CSEEEEESSCCCSCCHHHHTTC
T ss_pred ----------------------------------------------------------ccEEECcCCcccccCHHHhcCc
Confidence 4455555555553222344555
Q ss_pred CCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSY 670 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l 670 (773)
++|++|+|++|.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+..+++++.+++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 55555555555555444444555555555555555555555555555555555555555555544444444455555555
Q ss_pred cCCCCCCCCC
Q 040297 671 EGNPFLCGWP 680 (773)
Q Consensus 671 ~~Np~lC~~~ 680 (773)
++||+.|+|.
T Consensus 328 ~~N~l~c~c~ 337 (477)
T 2id5_A 328 DSNPLACDCR 337 (477)
T ss_dssp CSSCEECSGG
T ss_pred cCCCccCccc
Confidence 5555555543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=338.84 Aligned_cols=322 Identities=20% Similarity=0.159 Sum_probs=269.4
Q ss_pred CcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcc
Q 040297 247 LMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLD 326 (773)
Q Consensus 247 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 326 (773)
-+.++.+++.++ .+|..+ .+++++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 467889888887 566655 368999999999999 6655556679999999999999999989999999999999999
Q ss_pred cccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCC
Q 040297 327 GNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTL 406 (773)
Q Consensus 327 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 406 (773)
+|++++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 99999776677899999999999999999888889999999999999999999888889999999999999999998776
Q ss_pred CCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCC
Q 040297 407 PSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK 485 (773)
Q Consensus 407 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 485 (773)
+..+. +++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+.|++++|++++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 65444 88999999999999999999999999999999999998888887777777999999999999965556788888
Q ss_pred CCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccc
Q 040297 486 EVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI 565 (773)
Q Consensus 486 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (773)
+|+.|++++|++++..+..+..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~---------------------------------------------------------- 270 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHE---------------------------------------------------------- 270 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTT----------------------------------------------------------
T ss_pred ccCeeECCCCcCCccChhhccc----------------------------------------------------------
Confidence 8888888888887544433322
Q ss_pred cccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCccc
Q 040297 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630 (773)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 630 (773)
+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++...
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 34677777777777766677777777777777777777766666667777777777777776543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=317.21 Aligned_cols=350 Identities=19% Similarity=0.174 Sum_probs=274.5
Q ss_pred hhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCC
Q 040297 192 VENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 271 (773)
Q Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 271 (773)
++++++|++|++++|.+.+. | .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. + ++++++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 36788999999999998875 4 68888999999999999884 54 34478999999999998864 3 8889999
Q ss_pred cEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcC
Q 040297 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351 (773)
Q Consensus 272 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 351 (773)
++|++++|.++ .+| +..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|+.|++++
T Consensus 109 ~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 99999999988 465 45588899999999998875 2677888999999988655454 477888899999999
Q ss_pred CcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchh
Q 040297 352 NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLES 431 (773)
Q Consensus 352 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 431 (773)
|.+++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| ...+++|+.|++++|.+++..
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC--
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcC--
Confidence 98886 34 77888899999999888864 37788888888888888887 34 445778888888888887764
Q ss_pred hhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcC
Q 040297 432 IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLG 511 (773)
Q Consensus 432 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~ 511 (773)
...+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|..
T Consensus 250 -~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~------- 305 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ------- 305 (457)
T ss_dssp -CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT-------
T ss_pred -HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC-------
Confidence 345677778877665 45667788888776666 467888889999988877665531
Q ss_pred ccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccC
Q 040297 512 EDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLT 591 (773)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 591 (773)
...|+.|++++| +
T Consensus 306 ------------------------------------------------------~~~L~~L~l~~~-------------~ 318 (457)
T 3bz5_A 306 ------------------------------------------------------AAGITELDLSQN-------------P 318 (457)
T ss_dssp ------------------------------------------------------TCCCSCCCCTTC-------------T
T ss_pred ------------------------------------------------------CCcceEechhhc-------------c
Confidence 124555666555 6
Q ss_pred CCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCccc
Q 040297 592 RIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYE 671 (773)
Q Consensus 592 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~ 671 (773)
+|++|++++|++++. + ++++++|+.||+++|++++ ++.|..|++++|.++|. +++..+..++++
T Consensus 319 ~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~ 382 (457)
T 3bz5_A 319 KLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLT 382 (457)
T ss_dssp TCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred cCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccc
Confidence 899999999999984 4 8999999999999999986 24567778999999987 355677778888
Q ss_pred CCCCC
Q 040297 672 GNPFL 676 (773)
Q Consensus 672 ~Np~l 676 (773)
.|.+.
T Consensus 383 ~N~l~ 387 (457)
T 3bz5_A 383 NNSLT 387 (457)
T ss_dssp TTBEE
T ss_pred cCcEE
Confidence 88754
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=313.72 Aligned_cols=333 Identities=20% Similarity=0.167 Sum_probs=151.6
Q ss_pred CCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeee
Q 040297 269 KMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLY 348 (773)
Q Consensus 269 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 348 (773)
+++++|++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34444444444444 44444444444444444444444444444444455555555555555444444444455555555
Q ss_pred CcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCcccccc
Q 040297 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQ 428 (773)
Q Consensus 349 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 428 (773)
+++|.++...+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. ...++.|+.+++++|.+++.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc
Confidence 5555554333333444555555555555554444444444555555555555444321 11123333444443333321
Q ss_pred chhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhcc
Q 040297 429 LESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYT 508 (773)
Q Consensus 429 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 508 (773)
...++|++|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~- 270 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK- 270 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT-
T ss_pred -----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc-
Confidence 1123344444444444422 211 123444444444444432 23444444444444444444333333221
Q ss_pred CcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhh
Q 040297 509 SLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIG 588 (773)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 588 (773)
+++|+.|++++|++++ +|..+.
T Consensus 271 ---------------------------------------------------------l~~L~~L~L~~n~l~~-~~~~~~ 292 (390)
T 3o6n_A 271 ---------------------------------------------------------MQRLERLYISNNRLVA-LNLYGQ 292 (390)
T ss_dssp ---------------------------------------------------------CSSCCEEECCSSCCCE-EECSSS
T ss_pred ---------------------------------------------------------cccCCEEECCCCcCcc-cCcccC
Confidence 1244444444444442 333344
Q ss_pred ccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcC
Q 040297 589 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEED 668 (773)
Q Consensus 589 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~ 668 (773)
.+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.. | +..+++|+.|++++|++.+.-.. ..+..+...
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~ 366 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARP 366 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTT
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhh
Confidence 4555555555555555 3444455555555555555555533 1 34455555566666555543221 223444445
Q ss_pred cccCCCCCCCC
Q 040297 669 SYEGNPFLCGW 679 (773)
Q Consensus 669 ~l~~Np~lC~~ 679 (773)
.+.+++..|.+
T Consensus 367 ~~~~~~~~c~~ 377 (390)
T 3o6n_A 367 AVDDADQHCKI 377 (390)
T ss_dssp TBCCCCSCCCT
T ss_pred cccccCceecc
Confidence 55566666654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=326.21 Aligned_cols=335 Identities=18% Similarity=0.163 Sum_probs=202.1
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEE
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRL 323 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 323 (773)
+++++.+++++|.+....+..|..+++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 346666666666666555555666666666666666665 3433333446666666666666666555555566666666
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
++++|.+++..+..|+.+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 66666665444444455666666666666665555555555666666666666555331 334455555555555443
Q ss_pred CCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccC
Q 040297 404 GTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCE 483 (773)
Q Consensus 404 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 483 (773)
+ . ...++|+.|++++|.+... +..+ .++|+.|++++|.+++ +..+..
T Consensus 206 ~-----------------------l-----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~ 252 (597)
T 3oja_B 206 T-----------------------L-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLN 252 (597)
T ss_dssp E-----------------------E-----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGG
T ss_pred c-----------------------c-----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--Chhhcc
Confidence 2 1 1223455555555555532 2111 2456666666666654 245566
Q ss_pred CCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccc
Q 040297 484 LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQG 563 (773)
Q Consensus 484 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (773)
+++|+.|++++|.+++..|..+..
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------- 276 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVK-------------------------------------------------------- 276 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT--------------------------------------------------------
T ss_pred CCCCCEEECCCCccCCCCHHHhcC--------------------------------------------------------
Confidence 666666666666666555554433
Q ss_pred cccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCE
Q 040297 564 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAV 643 (773)
Q Consensus 564 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 643 (773)
+++|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++.. +..+++|+.
T Consensus 277 --l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 277 --MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp --CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred --ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 2366666666666664 4555666777888888888877 56777777788888888888877543 556678888
Q ss_pred EEccCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 644 FKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 644 L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
|++++|++++..+. ..+..+....+.+++..|+.+
T Consensus 350 L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 350 LTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp EECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred EEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence 88888888765432 345666667788899899753
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=300.28 Aligned_cols=258 Identities=33% Similarity=0.538 Sum_probs=210.6
Q ss_pred CCCeeeCcCCcCCC--CcchhhcCCCCCcEEEccc-CcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEE
Q 040297 343 LLAGLYLSDNHLSG--RIPRWLGNLSALEDIRMSN-NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVH 419 (773)
Q Consensus 343 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 419 (773)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|+.|+++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls--------------------- 109 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT--------------------- 109 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE---------------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc---------------------
Confidence 45555555555554 4455555555555555553 55554555555555555555554
Q ss_pred CCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCC-CCCEEEccCCcCC
Q 040297 420 LSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK-EVRLIDLSHNNLS 498 (773)
Q Consensus 420 l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 498 (773)
+|.+++..|..+.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|+++
T Consensus 110 --~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 110 --HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp --EECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred --CCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 4555556666777888999999999999988899999999999999999999988999999998 8999999999999
Q ss_pred CcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCc
Q 040297 499 GYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK 578 (773)
Q Consensus 499 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 578 (773)
+.+|..+.. + .|+.|++++|+
T Consensus 188 ~~~~~~~~~----------------------------------------------------------l-~L~~L~Ls~N~ 208 (313)
T 1ogq_A 188 GKIPPTFAN----------------------------------------------------------L-NLAFVDLSRNM 208 (313)
T ss_dssp EECCGGGGG----------------------------------------------------------C-CCSEEECCSSE
T ss_pred ccCChHHhC----------------------------------------------------------C-cccEEECcCCc
Confidence 888876653 2 38899999999
Q ss_pred CcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCC
Q 040297 579 LTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDR 658 (773)
Q Consensus 579 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 658 (773)
+++.+|..++.+++|++|+|++|.+++.+|. +..+++|++|||++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999977776 889999999999999999999999999999999999999999999996
Q ss_pred CcccccCCcCcccCCCCCCCCCCCCCC
Q 040297 659 VAQFSTFEEDSYEGNPFLCGWPLSKSC 685 (773)
Q Consensus 659 ~~~~~~l~~~~l~~Np~lC~~~l~~~c 685 (773)
.++++++.+++.+||++||.|+. .|
T Consensus 288 -~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred -ccccccChHHhcCCCCccCCCCC-CC
Confidence 88999999999999999998775 46
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=300.00 Aligned_cols=312 Identities=21% Similarity=0.246 Sum_probs=203.4
Q ss_pred CCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE
Q 040297 219 YQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298 (773)
Q Consensus 219 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 298 (773)
++++++|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 455666666666665 555555555666666666666666555556666666666666666666 343333344566666
Q ss_pred EEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcC
Q 040297 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378 (773)
Q Consensus 299 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 378 (773)
|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 66666666554444445566666666666666555555555666666666666655532 133445555555555554
Q ss_pred CCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhh
Q 040297 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN 458 (773)
Q Consensus 379 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 458 (773)
.+ +...++|+.|++++|. +...... ..++|+.|++++|.+++. .++.
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~-----------------------l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNS-----------------------INVVRGP---VNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp SE-----EECCSSCSEEECCSSC-----------------------CCEEECC---CCSSCCEEECCSSCCCCC--GGGG
T ss_pred cc-----cCCCCcceEEECCCCe-----------------------eeecccc---ccccccEEECCCCCCccc--HHHc
Confidence 42 1222344444544444 4333221 235677788888877753 4677
Q ss_pred cCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCC
Q 040297 459 ILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPT 538 (773)
Q Consensus 459 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (773)
.+++|++|++++|.+++..|..+..+++|+.|++++|++++. |..+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~--------------------------------- 291 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG--------------------------------- 291 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSS---------------------------------
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-Cccc---------------------------------
Confidence 788888888888888877788888888888888888888642 2211
Q ss_pred CCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCC
Q 040297 539 QSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIE 618 (773)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 618 (773)
..+++|+.|++++|+++ .+|..++.+++|++|+|++|.+++. | +..+++|+
T Consensus 292 -------------------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~ 342 (390)
T 3o6n_A 292 -------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 342 (390)
T ss_dssp -------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred -------------------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence 11458899999999998 6777888999999999999999854 4 77889999
Q ss_pred eeeCccccCcccC
Q 040297 619 SLDLSYNLLHGKI 631 (773)
Q Consensus 619 ~LdLs~N~l~~~~ 631 (773)
.|++++|++.+..
T Consensus 343 ~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 343 NLTLSHNDWDCNS 355 (390)
T ss_dssp EEECCSSCEEHHH
T ss_pred EEEcCCCCccchh
Confidence 9999999998643
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=290.89 Aligned_cols=304 Identities=23% Similarity=0.314 Sum_probs=170.7
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEE
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRL 323 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 323 (773)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. +.+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4566667766666653 23 3666666666666666666 4443 34466666666666666543 235556666666
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
++++|.+++. +. +..+++|+.|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 6666665532 22 5555566666666554433322 25555555555555555543322 445555555555555443
Q ss_pred CCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccC
Q 040297 404 GTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCE 483 (773)
Q Consensus 404 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 483 (773)
+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|++++..+ +..
T Consensus 191 -----------------------~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~ 241 (347)
T 4fmz_A 191 -----------------------DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241 (347)
T ss_dssp -----------------------CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred -----------------------cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence 3222 4455556666666666554332 5556666666666666653322 556
Q ss_pred CCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccc
Q 040297 484 LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQG 563 (773)
Q Consensus 484 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (773)
+++|+.|++++|.+++. + .+.
T Consensus 242 l~~L~~L~l~~n~l~~~-~-~~~--------------------------------------------------------- 262 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI-N-AVK--------------------------------------------------------- 262 (347)
T ss_dssp CTTCCEEECCSSCCCCC-G-GGT---------------------------------------------------------
T ss_pred CCCCCEEECCCCccCCC-h-hHh---------------------------------------------------------
Confidence 66666666666665531 1 111
Q ss_pred cccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCE
Q 040297 564 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAV 643 (773)
Q Consensus 564 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 643 (773)
.+++|+.|++++|++++. +.+..+++|++|++++|.+++..|..|+++++|+.|++++|++++..| +..+++|+.
T Consensus 263 -~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 263 -DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp -TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred -cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 133566666666666642 345666666777777776666666666666677777777776665555 566666677
Q ss_pred EEccCCccc
Q 040297 644 FKVAYNNLS 652 (773)
Q Consensus 644 L~ls~N~l~ 652 (773)
|++++|+++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 777666654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=287.88 Aligned_cols=308 Identities=25% Similarity=0.347 Sum_probs=244.2
Q ss_pred CccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCC
Q 040297 215 PIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF 294 (773)
Q Consensus 215 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 294 (773)
.+..+++|++|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCC
Confidence 4557899999999999998 5664 3448999999999999986443 999999999999999998 5663 55699
Q ss_pred CccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcc
Q 040297 295 LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374 (773)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 374 (773)
+|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 99999999999997654 8899999999999997664444 48999999999999999986544 8899999999999
Q ss_pred cCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc
Q 040297 375 NNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP 454 (773)
Q Consensus 375 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 454 (773)
+|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|++++..+
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP-------------------------VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCch-------------------------hhcCCcCCEEEccCCccCCCcc
Confidence 999985443 7788888888888887754322 4455666777777776664333
Q ss_pred hhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCC
Q 040297 455 NWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSP 534 (773)
Q Consensus 455 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (773)
+..+++|++|++++|.+++. +.+..+++|+.|++++|++++. + .+.
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~---------------------------- 284 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLN---------------------------- 284 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGG----------------------------
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhc----------------------------
Confidence 66677777777777777643 3577788888888888877643 1 111
Q ss_pred CCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccC
Q 040297 535 CLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 614 (773)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 614 (773)
.+++|+.|++++|++++..|..++.+++|++|++++|.+++..| ++.+
T Consensus 285 ------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l 332 (347)
T 4fmz_A 285 ------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332 (347)
T ss_dssp ------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGC
T ss_pred ------------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhh
Confidence 14588889999999988888889999999999999999997666 8889
Q ss_pred ccCCeeeCccccCc
Q 040297 615 KQIESLDLSYNLLH 628 (773)
Q Consensus 615 ~~L~~LdLs~N~l~ 628 (773)
++|+.||+++|+++
T Consensus 333 ~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 333 SKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEESSSCC---
T ss_pred hccceeehhhhccc
Confidence 99999999999875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=318.27 Aligned_cols=313 Identities=21% Similarity=0.219 Sum_probs=257.8
Q ss_pred CCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCee
Q 040297 268 MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347 (773)
Q Consensus 268 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 347 (773)
+++++.+++++|.+. .+|..++..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 577888999888887 7888877778888888888888888777788888888888888888887777777888888888
Q ss_pred eCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccc
Q 040297 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEG 427 (773)
Q Consensus 348 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 427 (773)
++++|.+++..+..|+.+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------- 186 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------------------- 186 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----------------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----------------------
Confidence 8888888866555667788888888888888777777777777777777777766532
Q ss_pred cchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhc
Q 040297 428 QLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVY 507 (773)
Q Consensus 428 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 507 (773)
. +..+++|+.|++++|.+++ +...++|+.|++++|.+....+. + .++|+.|++++|.+++. ..+..
T Consensus 187 -~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~ 252 (597)
T 3oja_B 187 -D---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLN 252 (597)
T ss_dssp -C---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGG
T ss_pred -C---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhcc
Confidence 1 3345789999999998874 33457899999999999854332 2 36899999999999862 32322
Q ss_pred cCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhh
Q 040297 508 TSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI 587 (773)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 587 (773)
+++|+.|+|++|.+++.+|..|
T Consensus 253 ----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 253 ----------------------------------------------------------YPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp ----------------------------------------------------------CTTCSEEECCSSCCCEEESGGG
T ss_pred ----------------------------------------------------------CCCCCEEECCCCccCCCCHHHh
Confidence 4589999999999999999999
Q ss_pred hccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCc
Q 040297 588 GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEE 667 (773)
Q Consensus 588 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~ 667 (773)
+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.. +..+++++.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 999999999999999995 6777888999999999999999 67888899999999999999998764 457789999
Q ss_pred CcccCCCCCCCCC
Q 040297 668 DSYEGNPFLCGWP 680 (773)
Q Consensus 668 ~~l~~Np~lC~~~ 680 (773)
+++++|||.|+|.
T Consensus 350 L~l~~N~~~~~~~ 362 (597)
T 3oja_B 350 LTLSHNDWDCNSL 362 (597)
T ss_dssp EECCSSCEEHHHH
T ss_pred EEeeCCCCCChhH
Confidence 9999999999874
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=318.90 Aligned_cols=362 Identities=18% Similarity=0.142 Sum_probs=199.6
Q ss_pred CCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCc----cCchhhhCCCCCcEEEeecccCCCccchhHhhcCC-
Q 040297 220 QKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNG----SIPSSFADMKMLERLDISYNQLTGEIPERMATGCF- 294 (773)
Q Consensus 220 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~- 294 (773)
++|++||+++|.++......++..+++|++|++++|.++. .++..+..+++|++|++++|.+++..+..++..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567777777777633333434556788888888887764 34566777788888888888776444555555455
Q ss_pred ---CccEEEcccCcCCC----cCcccccCCCCCcEEEcccccCCcccccccc-----CCCCCCeeeCcCCcCCCCc----
Q 040297 295 ---LLEILALSNNNLQG----HIFSKKFNLTNLMRLQLDGNNFTGEISDSLS-----NCRLLAGLYLSDNHLSGRI---- 358 (773)
Q Consensus 295 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~---- 358 (773)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777663 3355566677777777777776543333222 2345777777776666432
Q ss_pred chhhcCCCCCcEEEcccCcCCCCcccccc-----CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhh
Q 040297 359 PRWLGNLSALEDIRMSNNNLEGPIPIEFC-----QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESII 433 (773)
Q Consensus 359 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 433 (773)
+..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++.... .++..+
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l 223 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCGIV 223 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHHHH
Confidence 34445556666666666665543333332 234555555555554432100 123344
Q ss_pred cCCCCeeEEeCCCCcccccc-----chhhhcCCCCcEEEccCcccccc----CcccccCCCCCCEEEccCCcCCCcCcch
Q 040297 434 HDSPYLVTLDLSYNRFHGSI-----PNWINILPQLSSLLLGNNYIEGE----IPVQLCELKEVRLIDLSHNNLSGYIPAC 504 (773)
Q Consensus 434 ~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 504 (773)
..+++|++|++++|++++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 44555555555555554321 11122345555555555555532 3444445555666666665554433333
Q ss_pred hhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCccc--
Q 040297 505 LVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE-- 582 (773)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-- 582 (773)
+...-. ...++|+.|++++|.+++.
T Consensus 304 l~~~l~-----------------------------------------------------~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 304 LCETLL-----------------------------------------------------EPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp HHHHHT-----------------------------------------------------STTCCCCEEECTTSCCBGGGH
T ss_pred HHHHhc-----------------------------------------------------cCCccceeeEcCCCCCchHHH
Confidence 221100 0012555666666665543
Q ss_pred --CChhhhccCCCCeEeCCCCcCCCCCcccccc-----CccCCeeeCccccCcc----cCCcccccCCCCCEEEccCCcc
Q 040297 583 --IPTQIGYLTRIHALNLSHNNLTGTIPTTFSN-----LKQIESLDLSYNLLHG----KIPSQLTVLNTLAVFKVAYNNL 651 (773)
Q Consensus 583 --~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~LdLs~N~l~~----~~p~~l~~l~~L~~L~ls~N~l 651 (773)
++..+..+++|++|+|++|.+++..+..+.. .++|+.|+|++|++++ .+|..+..+++|++|++++|++
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 3444555566666666666665444433332 4566666666666654 5555666666666666666666
Q ss_pred cc
Q 040297 652 SG 653 (773)
Q Consensus 652 ~~ 653 (773)
++
T Consensus 411 ~~ 412 (461)
T 1z7x_W 411 GD 412 (461)
T ss_dssp CH
T ss_pred CH
Confidence 54
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.98 E-value=8e-34 Score=314.64 Aligned_cols=313 Identities=17% Similarity=0.153 Sum_probs=180.4
Q ss_pred CCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccC----CccCccCCCCcCEEEccCCcCccCCchhHhhCCC-
Q 040297 171 HDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGS----FRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLP- 245 (773)
Q Consensus 171 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~- 245 (773)
++|++|++++++++......++..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34677778777776554444457788888888888887642 3455667788888888888887555555665565
Q ss_pred ---CCcEEEccCCccCc----cCchhhhCCCCCcEEEeecccCCCccchhHhhc----CCCccEEEcccCcCCCcC----
Q 040297 246 ---GLMDLNLSRNAFNG----SIPSSFADMKMLERLDISYNQLTGEIPERMATG----CFLLEILALSNNNLQGHI---- 310 (773)
Q Consensus 246 ---~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~---- 310 (773)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+... .++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998874 457888899999999999998874444433332 345777777777666532
Q ss_pred cccccCCCCCcEEEcccccCCcccccccc-----CCCCCCeeeCcCCcCCCC----cchhhcCCCCCcEEEcccCcCCCC
Q 040297 311 FSKKFNLTNLMRLQLDGNNFTGEISDSLS-----NCRLLAGLYLSDNHLSGR----IPRWLGNLSALEDIRMSNNNLEGP 381 (773)
Q Consensus 311 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 381 (773)
+..+..+++|++|++++|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 23334455666666666655433222222 133555555555555432 233344444444444444444321
Q ss_pred ccccccCCCCCcEEEccCCCCCCCCCCCC-CCCceeEEECCCcccccc----chhhhcCCCCeeEEeCCCCccccccchh
Q 040297 382 IPIEFCQLDYLTILDLSNNAIFGTLPSCF-SPAFIEQVHLSKNKIEGQ----LESIIHDSPYLVTLDLSYNRFHGSIPNW 456 (773)
Q Consensus 382 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 456 (773)
....+. +..+ .++.|+.|++++|.++.. ++..+..+++|++|++++|.+++..+..
T Consensus 243 ~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 243 GMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 111000 0001 123444444444444432 3444555666777777777665443333
Q ss_pred hhc-----CCCCcEEEccCcccccc----CcccccCCCCCCEEEccCCcCCCcCc
Q 040297 457 INI-----LPQLSSLLLGNNYIEGE----IPVQLCELKEVRLIDLSHNNLSGYIP 502 (773)
Q Consensus 457 ~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p 502 (773)
+.. .++|+.|++++|.+++. ++..+..+++|+.|++++|.+++..+
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 322 24666666666666543 33444555666666666666554333
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=272.90 Aligned_cols=288 Identities=17% Similarity=0.176 Sum_probs=196.8
Q ss_pred CCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEcc
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLS 398 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 398 (773)
+++.++++++.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5666666666666 3454443 567777777777776655567777777777777777776667777777777777777
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccc--ccchhhhcCCCCcEEEccCcccccc
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHG--SIPNWINILPQLSSLLLGNNYIEGE 476 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~ 476 (773)
+|.++......+ ++|+.|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+++
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 777764333222 577788888888877777778888888888888887753 556677778888888888888773
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
+|..+. ++|+.|++++|++++..|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------- 214 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKG------------------------------------------------- 214 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTT-------------------------------------------------
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcC-------------------------------------------------
Confidence 444332 67777777777777655554432
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 636 (773)
+++|+.|++++|++++..+..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|++++..+..|.
T Consensus 215 ---------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 215 ---------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp ---------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ---------CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 236777777777777666667777777777777777777 6677777777777777777777766666554
Q ss_pred cC------CCCCEEEccCCcccc--cCCCCCcccccCCcCcccCC
Q 040297 637 VL------NTLAVFKVAYNNLSG--KIPDRVAQFSTFEEDSYEGN 673 (773)
Q Consensus 637 ~l------~~L~~L~ls~N~l~~--~~p~~~~~~~~l~~~~l~~N 673 (773)
.. ..|+.+++++|++.. ..|..+..+.+++.+++++|
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 32 567777777777643 34444555566666666665
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-32 Score=283.30 Aligned_cols=181 Identities=30% Similarity=0.438 Sum_probs=132.0
Q ss_pred CCCcEEEcccccCCc--cccccccCCCCCCeeeCcC-CcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcE
Q 040297 318 TNLMRLQLDGNNFTG--EISDSLSNCRLLAGLYLSD-NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTI 394 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 394 (773)
.++++|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..|+.+++|++|++++|.+.+.+|..+..+++|+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999998 8999999999999999995 9999999999999999999999999999889999999999999
Q ss_pred EEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCC-CeeEEeCCCCccccccchhhhcCCCCcEEEccCcc
Q 040297 395 LDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSP-YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNY 472 (773)
Q Consensus 395 L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 472 (773)
|++++|.+.+.+|..+. +++|+.|++++|.+++..|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999888766655433 55555555555555555555555554 555555555555555555555544 5555555555
Q ss_pred ccccCcccccCCCCCCEEEccCCcCCC
Q 040297 473 IEGEIPVQLCELKEVRLIDLSHNNLSG 499 (773)
Q Consensus 473 l~~~~~~~~~~l~~L~~L~L~~N~l~~ 499 (773)
+++..|..+..+++|+.|++++|++++
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceee
Confidence 555555555555555555555555443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=272.89 Aligned_cols=290 Identities=21% Similarity=0.268 Sum_probs=165.3
Q ss_pred CcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCc
Q 040297 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLS 350 (773)
Q Consensus 271 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 350 (773)
++.++++++.++ .+|..+ .+.++.|++++|.+++..+..+.++++|++|++++|++++..|..+..+++|++|+++
T Consensus 33 l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 444444444444 344322 2344555555555554444445555555555555555554445555555555555555
Q ss_pred CCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccch
Q 040297 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLE 430 (773)
Q Consensus 351 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 430 (773)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~ 164 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIEN 164 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBCT
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcCh
Confidence 55554 2333222 4555555555555554444555555555555555544310 1223
Q ss_pred hhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCc
Q 040297 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSL 510 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 510 (773)
..+.++++|++|++++|.++. +|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--- 238 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--- 238 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG---
T ss_pred hhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC---
Confidence 344455555555665555552 333222 56666666666666665666666677777777777666544433332
Q ss_pred CccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhcc
Q 040297 511 GEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYL 590 (773)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 590 (773)
+++|+.|++++|+++ .+|..+..+
T Consensus 239 -------------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 239 -------------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp -------------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTC
T ss_pred -------------------------------------------------------CCCCCEEECCCCcCc-cCChhhccC
Confidence 236777777777777 667777777
Q ss_pred CCCCeEeCCCCcCCCCCcccccc------CccCCeeeCccccCcc--cCCcccccCCCCCEEEccCCc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSN------LKQIESLDLSYNLLHG--KIPSQLTVLNTLAVFKVAYNN 650 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 650 (773)
++|++|++++|.+++..+..|.. .+.|+.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 78888888888887666666643 3677788888888763 556777778888888888774
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=275.23 Aligned_cols=287 Identities=16% Similarity=0.202 Sum_probs=142.8
Q ss_pred CCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEcc
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLS 398 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 398 (773)
+++.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3444555554444 3333332 345555555555554444445555555555555555554445555555555555555
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccc--ccchhhhcCCCCcEEEccCcccccc
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHG--SIPNWINILPQLSSLLLGNNYIEGE 476 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~ 476 (773)
+|.+....+..+ ++|++|++++|.+.+..+..+.++++|++|++++|.++. ..+..+..+ +|+.|++++|++++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 555543222221 455555555555555555555555556666666655542 334444444 55555555555553
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
+|..+. ++|+.|++++|.+++..+..+..
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~------------------------------------------------- 215 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLR------------------------------------------------- 215 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT-------------------------------------------------
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcC-------------------------------------------------
Confidence 333222 45555555555555433332221
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 636 (773)
+++|+.|++++|++++..+..++.+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|.
T Consensus 216 ---------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 216 ---------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp ---------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ---------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 224555555555555544445555555555555555555 4555555555555555555555554444443
Q ss_pred cC------CCCCEEEccCCccc--ccCCCCCcccccCCcCcccCC
Q 040297 637 VL------NTLAVFKVAYNNLS--GKIPDRVAQFSTFEEDSYEGN 673 (773)
Q Consensus 637 ~l------~~L~~L~ls~N~l~--~~~p~~~~~~~~l~~~~l~~N 673 (773)
.. ..|+.|++++|++. +..|..+..++.++.+++++|
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 32 34555555555554 344444444555555555544
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=274.89 Aligned_cols=289 Identities=22% Similarity=0.287 Sum_probs=145.8
Q ss_pred CcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCc
Q 040297 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLS 350 (773)
Q Consensus 271 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 350 (773)
++.++++++.++ .+|..+ .++++.|++++|.+.+..+..+.++++|++|++++|++++..|..+..+++|++|+++
T Consensus 35 l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 445555555544 444332 2345555555555554444445555555555555555554445555555555555555
Q ss_pred CCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccch
Q 040297 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLE 430 (773)
Q Consensus 351 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 430 (773)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~ 166 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------------------GFEP 166 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------------------GSCT
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---------------------CCCc
Confidence 55555 2333222 4555555555555544444455555555555555544310 1111
Q ss_pred hhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCc
Q 040297 431 SIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSL 510 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 510 (773)
..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--- 239 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--- 239 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG---
T ss_pred ccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC---
Confidence 222222 34444444444442 222221 45555555555555444455555555555555555555443333322
Q ss_pred CccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhcc
Q 040297 511 GEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYL 590 (773)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 590 (773)
+++|+.|++++|+++ .+|..+..+
T Consensus 240 -------------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 240 -------------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred -------------------------------------------------------CCCCCEEECCCCcCe-ecChhhhcC
Confidence 235556666666665 555556666
Q ss_pred CCCCeEeCCCCcCCCCCccccccC------ccCCeeeCccccCc--ccCCcccccCCCCCEEEccCCc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSNL------KQIESLDLSYNLLH--GKIPSQLTVLNTLAVFKVAYNN 650 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~LdLs~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 650 (773)
++|++|++++|.+++..+..|... .+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 666666666666665555555432 45666666666665 4555666666666666666653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-31 Score=300.25 Aligned_cols=202 Identities=15% Similarity=0.078 Sum_probs=81.6
Q ss_pred cCCCCCEEEccCCcCccCCccCccC-CCC-cCEEEccCCc-CccCCchhHhhCCCCCcEEEccCCccCcc----Cchhhh
Q 040297 194 NNTNLETLLLANNSLFGSFRMPIHS-YQK-LAILDVSKNF-FQGHIPVEIGTYLPGLMDLNLSRNAFNGS----IPSSFA 266 (773)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~~-L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~ 266 (773)
++++|++|+|++|.+.+..+..+.. +++ |++|++++|. +.......+...+++|++|+|++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4455555555555444333333322 222 5555555543 11000111112245555555555554433 222334
Q ss_pred CCCCCcEEEeecccCCC----ccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCC---cccccccc
Q 040297 267 DMKMLERLDISYNQLTG----EIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFT---GEISDSLS 339 (773)
Q Consensus 267 ~l~~L~~L~Ls~n~l~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~ 339 (773)
.+++|++|++++|.+++ .++. ++..+++|+.|++++|.+.+ .+..+..+++|++|+++..... +..+..+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 44555555555554431 1111 12234555555555554443 2234444455555555432111 11222334
Q ss_pred CCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCcc-ccccCCCCCcEEEcc
Q 040297 340 NCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP-IEFCQLDYLTILDLS 398 (773)
Q Consensus 340 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~ 398 (773)
.+++|+.|+++++... .+|..+..+++|++|++++|.+.+... ..+..+++|+.|+++
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 4444444444443222 334444444444444444444332221 112344444444444
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-30 Score=295.63 Aligned_cols=411 Identities=13% Similarity=0.048 Sum_probs=290.9
Q ss_pred chhHhhcCCCCCEEEccCCcC---ccCCccCc------------cCCCCcCEEEccCCcCccCCchhHhhCCCC-CcEEE
Q 040297 188 PNWLVENNTNLETLLLANNSL---FGSFRMPI------------HSYQKLAILDVSKNFFQGHIPVEIGTYLPG-LMDLN 251 (773)
Q Consensus 188 ~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~ 251 (773)
|..++..+++|++|+++++.. .+.+|..+ ..+++|++|++++|.+++..+..+...++. |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 444556677777777766432 12222222 267899999999998876666655554455 99999
Q ss_pred ccCCc-cCc-cCchhhhCCCCCcEEEeecccCCCccch---hHhhcCCCccEEEcccCcCCCc----CcccccCCCCCcE
Q 040297 252 LSRNA-FNG-SIPSSFADMKMLERLDISYNQLTGEIPE---RMATGCFLLEILALSNNNLQGH----IFSKKFNLTNLMR 322 (773)
Q Consensus 252 L~~n~-l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 322 (773)
+++|. ++. .++.....+++|++|++++|.+++.-+. .+...+++|++|++++|.+++. .+..+.++++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 99887 221 1223345789999999999988755221 2345689999999999998733 3344567899999
Q ss_pred EEcccccCCccccccccCCCCCCeeeCcCCcCC---CCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccC
Q 040297 323 LQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS---GRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSN 399 (773)
Q Consensus 323 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 399 (773)
|++++|.+.+ ++..+..+++|+.|+++..... ...+..+..+++|+.++++++.. +.+|..+..+++|+.|++++
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETT
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCC
Confidence 9999998885 6778888999999999854322 23345667788999999988643 35677778889999999999
Q ss_pred CCCCCCCC-C-CCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCC-----------Cccccc-cchhhhcCCCCcE
Q 040297 400 NAIFGTLP-S-CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSY-----------NRFHGS-IPNWINILPQLSS 465 (773)
Q Consensus 400 n~l~~~~~-~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~-----------n~l~~~-~~~~~~~l~~L~~ 465 (773)
|.+++... . ...+++|+.|+++++...+..+.....+++|++|++++ |.+++. ++.....+++|+.
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 98654332 1 23478899999984433344455567788999999993 566643 2333456899999
Q ss_pred EEccCccccccCcccccC-CCCCCEEEcc----CCcCCCcCcc-hhhccCcCccccCCCCCCccccccccccCCCCCCCC
Q 040297 466 LLLGNNYIEGEIPVQLCE-LKEVRLIDLS----HNNLSGYIPA-CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQ 539 (773)
Q Consensus 466 L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (773)
|++..|.+++..+..+.. +++|+.|+++ .|.+++.... .+...
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~------------------------------- 431 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL------------------------------- 431 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-------------------------------
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH-------------------------------
Confidence 999888888776666665 8899999996 5666643111 01000
Q ss_pred CCCCCCCcceEEEEecCccccccccccccccEEecccC--cCcccCChhhhc-cCCCCeEeCCCCcCCC-CCccccccCc
Q 040297 540 SGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCN--KLTGEIPTQIGY-LTRIHALNLSHNNLTG-TIPTTFSNLK 615 (773)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~ 615 (773)
...+++|+.|++++| .+++..+..++. +++|++|+|++|.+++ .++..+..++
T Consensus 432 -----------------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 432 -----------------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp -----------------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred -----------------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence 012468999999854 377666666654 8899999999999986 3455668899
Q ss_pred cCCeeeCccccCccc-CCcccccCCCCCEEEccCCccccc
Q 040297 616 QIESLDLSYNLLHGK-IPSQLTVLNTLAVFKVAYNNLSGK 654 (773)
Q Consensus 616 ~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~~~ 654 (773)
+|+.|+|++|++++. ++.....+++|+.|++++|+++..
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999999999998755 455557899999999999998754
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=267.24 Aligned_cols=232 Identities=24% Similarity=0.289 Sum_probs=174.2
Q ss_pred CCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEcc
Q 040297 391 YLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLG 469 (773)
Q Consensus 391 ~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 469 (773)
+++.|++++|.+.+..+..+. +++|+.|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 344444444444433333222 4445555555555555556667777888888888888876666677778888888888
Q ss_pred CccccccCcccccCCCCCCEEEccCCcCCCcCcc-hhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcc
Q 040297 470 NNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPA-CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEE 548 (773)
Q Consensus 470 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (773)
+|++++..+..+..+++|+.|++++|+..+.++. .+.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~------------------------------------------ 182 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE------------------------------------------ 182 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT------------------------------------------
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh------------------------------------------
Confidence 8888866666788888888888887554444332 221
Q ss_pred eEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc
Q 040297 549 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 549 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
.+++|++|++++|+++ .+| .+..+++|++|+|++|.+++..|..|.++++|+.|+|++|+++
T Consensus 183 ----------------~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 183 ----------------GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp ----------------TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ----------------cccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 1457888888888888 455 4788889999999999999888899999999999999999999
Q ss_pred ccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 629 GKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 629 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
+..|..|..+++|+.|++++|++++..+..+..+..++.+++++|||.|+|.+.
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 888989999999999999999999888888888899999999999999999653
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-29 Score=263.12 Aligned_cols=279 Identities=17% Similarity=0.184 Sum_probs=163.3
Q ss_pred CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
+.....+++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|+.|++
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 33444555555555 3444333 35566666666555444445555555555555555555444444555555555555
Q ss_pred cCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc-hhhhcCCCCcEEEccCc-cccc
Q 040297 398 SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP-NWINILPQLSSLLLGNN-YIEG 475 (773)
Q Consensus 398 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~ 475 (773)
++|. +++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+
T Consensus 108 s~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 108 SYNY-----------------------LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CSSC-----------------------CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCCc-----------------------CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence 5554 444444555666666666666666663322 35566666666666666 3554
Q ss_pred cCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEec
Q 040297 476 EIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTK 555 (773)
Q Consensus 476 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (773)
..+..+..+++|+.|++++|++++..|..+..
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------------------------------ 196 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKS------------------------------------------------ 196 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTT------------------------------------------------
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhc------------------------------------------------
Confidence 44556666666666666666666554544332
Q ss_pred CccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccc---cCccCCeeeCccccCcc---
Q 040297 556 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFS---NLKQIESLDLSYNLLHG--- 629 (773)
Q Consensus 556 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~LdLs~N~l~~--- 629 (773)
+++|++|++++|+++...+..+..+++|++|++++|.+++..+..+. ..+.++.++++++.+++
T Consensus 197 ----------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 197 ----------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp ----------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred ----------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 23666666666666532223344566677777777776655444332 34556667777776665
Q ss_pred -cCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 630 -KIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 630 -~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
.+|+.+..+++|+.|++++|+++...+..++.+++++.+++++||+.|+|+
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 356667777777777777777774433334677777777788888888775
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-28 Score=265.57 Aligned_cols=253 Identities=21% Similarity=0.238 Sum_probs=177.7
Q ss_pred CCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCc
Q 040297 344 LAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKN 423 (773)
Q Consensus 344 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 423 (773)
...++.++..++ .+|..+. ++++.|++++|.+.+..+..|.++++|+.|++++|.+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--------------------- 111 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--------------------- 111 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---------------------
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc---------------------
Confidence 345555555555 3443332 4556666666666555555555555555555555554
Q ss_pred cccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcc
Q 040297 424 KIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPA 503 (773)
Q Consensus 424 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 503 (773)
++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|+..+.++.
T Consensus 112 --~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 112 --RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp --CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred --CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 444455566666777777777777755555666777777777777777765556677777777777777544333332
Q ss_pred h-hhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCccc
Q 040297 504 C-LVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE 582 (773)
Q Consensus 504 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 582 (773)
. +. .+++|+.|+|++|++++
T Consensus 190 ~~~~----------------------------------------------------------~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 190 GAFE----------------------------------------------------------GLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp TTTT----------------------------------------------------------TCTTCCEEECTTSCCSS-
T ss_pred hhcc----------------------------------------------------------CCCCCCEEECCCCcccc-
Confidence 1 11 13477788888888874
Q ss_pred CChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCccc
Q 040297 583 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQF 662 (773)
Q Consensus 583 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 662 (773)
+| .+..+++|++|+|++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+..+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 34 47778888888888888888888888888888899999888888888888888889999999998888888877888
Q ss_pred ccCCcCcccCCCCCCCCCCC
Q 040297 663 STFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 663 ~~l~~~~l~~Np~lC~~~l~ 682 (773)
++++.+++++|||.|+|.+.
T Consensus 290 ~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TTCCEEECCSSCEECSTTTH
T ss_pred cCCCEEEccCCCcCCCCCch
Confidence 88888999999999998753
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=259.09 Aligned_cols=283 Identities=20% Similarity=0.183 Sum_probs=175.7
Q ss_pred CCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCee
Q 040297 268 MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGL 347 (773)
Q Consensus 268 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 347 (773)
|+.....+.+++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|++++..+..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 445555677777777 677644 3467777777777777666677777888888888888877667777778888888
Q ss_pred eCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCcc-ccccCCCCCcEEEccCCC-CCCCCCCCCCCCceeEEECCCccc
Q 040297 348 YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIP-IEFCQLDYLTILDLSNNA-IFGTLPSCFSPAFIEQVHLSKNKI 425 (773)
Q Consensus 348 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~L~~L~l~~n~l 425 (773)
++++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|. +.+..+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~------------------ 167 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR------------------ 167 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH------------------
Confidence 888888876555567777888888888887774433 356777777777777773 433323
Q ss_pred cccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchh
Q 040297 426 EGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACL 505 (773)
Q Consensus 426 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 505 (773)
..+.++++|++|++++|++++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+
T Consensus 168 -----~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 168 -----KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp -----TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred -----HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 334444555555555555554445555555555555555555543222223345555566666665554332221
Q ss_pred hccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc----
Q 040297 506 VYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG---- 581 (773)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---- 581 (773)
... .....++.++++++.+++
T Consensus 243 ~~~-------------------------------------------------------~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 243 STG-------------------------------------------------------ETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp -----------------------------------------------------------CCCCCCEEEEESCBCCHHHHH
T ss_pred ccc-------------------------------------------------------cccchhhccccccccccCcchh
Confidence 110 012245556666666554
Q ss_pred cCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCC
Q 040297 582 EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632 (773)
Q Consensus 582 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 632 (773)
.+|..+..+++|++|+|++|+++...+..|+++++|+.|+|++|++.+..|
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 456677777888888888888873333335777777777777777776544
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=252.22 Aligned_cols=254 Identities=21% Similarity=0.256 Sum_probs=175.7
Q ss_pred CeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCcc
Q 040297 345 AGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNK 424 (773)
Q Consensus 345 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~ 424 (773)
+.++++++.++ .+|..+. +++++|++++|.+....+..|..+++|+.|++++|.+...
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------- 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-------------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-------------------
Confidence 34566666555 3343322 4566666666666543333455556666666655554311
Q ss_pred ccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCc-ccccCCCCCCEEEccCCcCCCcCcc
Q 040297 425 IEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP-VQLCELKEVRLIDLSHNNLSGYIPA 503 (773)
Q Consensus 425 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~ 503 (773)
+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+.
T Consensus 68 --~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 68 --GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp --EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT
T ss_pred --cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh
Confidence 112344556677777777777776 355556777777777777777775544 4677777888888888877655554
Q ss_pred hhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc-c
Q 040297 504 CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-E 582 (773)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ 582 (773)
.+.. +++|++|++++|.+++ .
T Consensus 145 ~~~~----------------------------------------------------------l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 145 IFNG----------------------------------------------------------LSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp TTTT----------------------------------------------------------CTTCCEEECTTCEEGGGE
T ss_pred hccc----------------------------------------------------------CcCCCEEECCCCcccccc
Confidence 4332 3477788888888775 5
Q ss_pred CChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCccc
Q 040297 583 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQF 662 (773)
Q Consensus 583 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 662 (773)
+|..+..+++|++|+|++|.+++..|..|+.+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 67778888888888888888887778888888888888888888887777778888888888888888888888777776
Q ss_pred -ccCCcCcccCCCCCCCCCC
Q 040297 663 -STFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 663 -~~l~~~~l~~Np~lC~~~l 681 (773)
.+++.+++++||+.|+|..
T Consensus 247 ~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CTTCCEEECTTCCEECSGGG
T ss_pred hccCCEEEccCCCeecccCh
Confidence 4788888888888888764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=251.10 Aligned_cols=114 Identities=22% Similarity=0.284 Sum_probs=72.1
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCC-CCCEEE
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLN-TLAVFK 645 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~L~ 645 (773)
++|+.|++++|++++..|..++.+++|++|+|++|.+++..+..|..+++|+.|||++|++++.+|..+..++ +|++|+
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 3566666666666655566677777777777777777766666677777777777777777777777777763 777777
Q ss_pred ccCCcccccCCC--CCcccccCCcCcccCCCCCCCCC
Q 040297 646 VAYNNLSGKIPD--RVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 646 ls~N~l~~~~p~--~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
+++|++++..+. ....+...+......+...|..|
T Consensus 255 L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 255 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp CTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred ccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 777777654321 01112233344445566666543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=242.20 Aligned_cols=229 Identities=19% Similarity=0.190 Sum_probs=156.7
Q ss_pred cEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCcc
Q 040297 393 TILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNY 472 (773)
Q Consensus 393 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 472 (773)
+.++.+++.++..+... ++.++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45555555554332211 3466666666666666666666777777777777777776666667777777777777776
Q ss_pred -ccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEE
Q 040297 473 -IEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQ 551 (773)
Q Consensus 473 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (773)
+++..+..+..+++|++|++++|.+++..|..+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------- 127 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-------------------------------------------- 127 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------------------------------------------
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC--------------------------------------------
Confidence 66555666777777777777777776554443332
Q ss_pred EEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccC
Q 040297 552 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 631 (773)
Q Consensus 552 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~ 631 (773)
+++|++|++++|++++..+..++.+++|++|+|++|.+++..+..|..+++|+.|++++|++++..
T Consensus 128 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 128 --------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred --------------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 346777777777777655566777777777777777777666666777777777777777777777
Q ss_pred CcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 632 PSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 632 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
|..+..+++|+.|++++|++++..+..+..++.++.+++++||+.|+|+.
T Consensus 194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 77777777777777777777776665566677777777777777777764
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=239.05 Aligned_cols=226 Identities=22% Similarity=0.171 Sum_probs=149.9
Q ss_pred cEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcC
Q 040297 272 ERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351 (773)
Q Consensus 272 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 351 (773)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555555555 455432 34566666666666655555566666666666666666655566666666666666666
Q ss_pred Cc-CCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccc
Q 040297 352 NH-LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQL 429 (773)
Q Consensus 352 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~ 429 (773)
|. +....|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 65 5555456666666666666666666665566666666677777766666655554433 566666666666666666
Q ss_pred hhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcC
Q 040297 430 ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYI 501 (773)
Q Consensus 430 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 501 (773)
+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 666777778888888888887777777777888888888888887666666777888888888888776543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-29 Score=284.27 Aligned_cols=396 Identities=17% Similarity=0.129 Sum_probs=197.3
Q ss_pred hcCCCCCEEEccCCcCccCCccCcc-CCCCcCEEEccCC-cCccCCchhHhhCCCCCcEEEccCCccCccCchhhh----
Q 040297 193 ENNTNLETLLLANNSLFGSFRMPIH-SYQKLAILDVSKN-FFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA---- 266 (773)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~---- 266 (773)
..+++|++|+|++|.+.+..+..+. .+++|++|++++| .++......+...+++|++|++++|.+++..+..+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4566677777777666554444443 4667777777766 333221223333366777777777766554443333
Q ss_pred CCCCCcEEEeeccc--CCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccc-------cCCcccccc
Q 040297 267 DMKMLERLDISYNQ--LTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN-------NFTGEISDS 337 (773)
Q Consensus 267 ~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~ 337 (773)
.+++|++|++++|. +.......+...+++|++|++++|...+..+..+..+++|++|+++.+ .+.+ ++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 45567777776665 221111222233566777777666222224445556666666664433 2222 2334
Q ss_pred ccCCCCCCee-eCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccc-cccCCCCCcEEEccCCCCCCC-CCCCC-CCC
Q 040297 338 LSNCRLLAGL-YLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPI-EFCQLDYLTILDLSNNAIFGT-LPSCF-SPA 413 (773)
Q Consensus 338 l~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~~-~~~ 413 (773)
+.++++|+.| .+..... +.++..+..+++|+.|++++|.+.+.... .+..+++|+.|++++| +... ++... .++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 5566666666 3332221 13333344456666666666664432211 1345566666666655 2211 11111 134
Q ss_pred ceeEEEC---------CCccccccchhhh-cCCCCeeEEeCCCCccccccchhhh-cCCCCcEEEcc--C----cccccc
Q 040297 414 FIEQVHL---------SKNKIEGQLESII-HDSPYLVTLDLSYNRFHGSIPNWIN-ILPQLSSLLLG--N----NYIEGE 476 (773)
Q Consensus 414 ~L~~L~l---------~~n~l~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~ 476 (773)
+|+.|++ ..+.+++.....+ .++++|++|+++.|.+++..+..+. .+++|+.|+++ + +.+++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 4555554 2233333222222 2366666666666666654444443 36666666666 3 334311
Q ss_pred -----CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEE
Q 040297 477 -----IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQ 551 (773)
Q Consensus 477 -----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (773)
++..+..+++|+.|++++ .+++..+..+..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~-------------------------------------------- 453 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT-------------------------------------------- 453 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH--------------------------------------------
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH--------------------------------------------
Confidence 112244556666666655 444332222221
Q ss_pred EEecCccccccccccccccEEecccCcCcccCChhh-hccCCCCeEeCCCCcCCCCCcc-ccccCccCCeeeCccccCcc
Q 040297 552 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHG 629 (773)
Q Consensus 552 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~~ 629 (773)
.+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|+.|++++|+++.
T Consensus 454 -------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 454 -------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 12356666666666655444444 4566666666666666443332 23346666666666666643
Q ss_pred cCCccc-ccCCCCCEEEccCC
Q 040297 630 KIPSQL-TVLNTLAVFKVAYN 649 (773)
Q Consensus 630 ~~p~~l-~~l~~L~~L~ls~N 649 (773)
.....+ ..++.|+...+..+
T Consensus 521 ~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 521 GACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHHhCCCCEEEEecCC
Confidence 333333 34455554444443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=251.00 Aligned_cols=247 Identities=19% Similarity=0.204 Sum_probs=164.3
Q ss_pred CCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEcc
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLS 398 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 398 (773)
....++.++..++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|.++++|+.|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4578889888888 5676654 789999999999998888999999999999999999998888899999999999999
Q ss_pred CCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCC-ccccccchhhhcCCCCcEEEccCcccccc
Q 040297 399 NNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYN-RFHGSIPNWINILPQLSSLLLGNNYIEGE 476 (773)
Q Consensus 399 ~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 476 (773)
+|.+++..+..+. +++|+.|++++|.+....+..|.++++|++|++++| .+....+..+..+++|+.|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9988866655443 556666666666665555555555555555555553 22222222344444444444444444421
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
| .+..++
T Consensus 212 -~-~~~~l~----------------------------------------------------------------------- 218 (452)
T 3zyi_A 212 -P-NLTPLV----------------------------------------------------------------------- 218 (452)
T ss_dssp -C-CCTTCT-----------------------------------------------------------------------
T ss_pred -c-cccccc-----------------------------------------------------------------------
Confidence 1 233333
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 636 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 636 (773)
+|+.|+|++|++++..|..|..+++|+.|+|++|.+++..|..|.++++|+.|||++|++++..+..+.
T Consensus 219 -----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 219 -----------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp -----------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred -----------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 555566666666555555666666666666666666655566666666666666666666655555566
Q ss_pred cCCCCCEEEccCCccc
Q 040297 637 VLNTLAVFKVAYNNLS 652 (773)
Q Consensus 637 ~l~~L~~L~ls~N~l~ 652 (773)
.+++|+.|++++|++.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 6666666666666543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-28 Score=254.67 Aligned_cols=263 Identities=20% Similarity=0.180 Sum_probs=161.0
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 333333332223333344455555555555555444555555555555555555543332 455555555555555544
Q ss_pred CCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCccccc-
Q 040297 404 GTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLC- 482 (773)
Q Consensus 404 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~- 482 (773)
+..+ .++|+.|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.
T Consensus 94 ~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 94 ELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp EEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred cccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 3221 245555555555555544332 45677777777777766566666677777777777777765555553
Q ss_pred CCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccc
Q 040297 483 ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQ 562 (773)
Q Consensus 483 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (773)
.+++|++|++++|.+++. +..
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~~~---------------------------------------------------------- 187 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-KGQ---------------------------------------------------------- 187 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-ECC----------------------------------------------------------
T ss_pred ccCcCCEEECCCCcCccc-ccc----------------------------------------------------------
Confidence 567777777777777533 110
Q ss_pred ccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc-ccCCcccccCCCC
Q 040297 563 GRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPSQLTVLNTL 641 (773)
Q Consensus 563 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~L 641 (773)
..+++|+.|++++|++++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|++. +.+|..+..++.|
T Consensus 188 -~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 188 -VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp -CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred -cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 013477778888888874 4555777888888888888888 46777788888888888888887 6777777777777
Q ss_pred CEEEccCC-cccccCCC
Q 040297 642 AVFKVAYN-NLSGKIPD 657 (773)
Q Consensus 642 ~~L~ls~N-~l~~~~p~ 657 (773)
+.+++++| .+.|..|.
T Consensus 265 ~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 265 QTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHHHHSSSSC
T ss_pred eEEECCCchhccCCchh
Confidence 77777744 46655443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=243.36 Aligned_cols=222 Identities=20% Similarity=0.261 Sum_probs=130.9
Q ss_pred CCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCC-CCCceeEEECCCccccccchhhhcCCCCeeEEe
Q 040297 365 LSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF-SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLD 443 (773)
Q Consensus 365 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 443 (773)
.++++.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+ .+++|+.|++++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888887 66777778888888888888887 444433 3566666666666666 3455566666666666
Q ss_pred CCCCccccccchhhhc---------CCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccc
Q 040297 444 LSYNRFHGSIPNWINI---------LPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDY 514 (773)
Q Consensus 444 Ls~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~ 514 (773)
+++|++.+.+|..+.. +++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~------- 227 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH------- 227 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG-------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc-------
Confidence 6666555555554432 555555555555555 445555555555555555555543 2222221
Q ss_pred cCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCC
Q 040297 515 HEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIH 594 (773)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 594 (773)
+++|+.|++++|.+.+.+|..++.+++|+
T Consensus 228 ---------------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 228 ---------------------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp ---------------------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred ---------------------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 23455555555555555555555555555
Q ss_pred eEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCC
Q 040297 595 ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYN 649 (773)
Q Consensus 595 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 649 (773)
+|+|++|.+.+.+|..++++++|+.|||++|++.+.+|+.+..+++|+.+++..|
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 5555555555555555555555555555555555555555555555555555544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=249.81 Aligned_cols=268 Identities=20% Similarity=0.183 Sum_probs=188.1
Q ss_pred CcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCc
Q 040297 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLS 350 (773)
Q Consensus 271 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 350 (773)
++..+++.+.+. ..+..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 444556666655 4555555555566666666666666665666666666666666666654332 5555666666666
Q ss_pred CCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccch
Q 040297 351 DNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLE 430 (773)
Q Consensus 351 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 430 (773)
+|.+++.. ..++|++ |++++|.+++..+.. +++|+.|++++|.+++..+
T Consensus 89 ~n~l~~l~-----~~~~L~~------------------------L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 89 NNYVQELL-----VGPSIET------------------------LHAANNNISRVSCSR--GQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SSEEEEEE-----ECTTCCE------------------------EECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGG
T ss_pred CCcccccc-----CCCCcCE------------------------EECCCCccCCcCccc--cCCCCEEECCCCCCCCccc
Confidence 66554221 1244444 445444444333322 3456677777777777667
Q ss_pred hhhcCCCCeeEEeCCCCccccccchhh-hcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccC
Q 040297 431 SIIHDSPYLVTLDLSYNRFHGSIPNWI-NILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTS 509 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 509 (773)
..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++. + ....+++|+.|++++|++++. |..+..
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~-- 212 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQS-- 212 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGG--
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcc--
Confidence 677778889999999999887766666 4689999999999999865 3 344589999999999999854 333332
Q ss_pred cCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhc
Q 040297 510 LGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY 589 (773)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 589 (773)
+++|+.|++++|+++ .+|..+..
T Consensus 213 --------------------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 213 --------------------------------------------------------AAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp --------------------------------------------------------GTTCSEEECTTSCCC-EECTTCCC
T ss_pred --------------------------------------------------------cCcccEEECcCCccc-chhhHhhc
Confidence 458999999999999 57888999
Q ss_pred cCCCCeEeCCCCcCC-CCCccccccCccCCeeeCc-cccCcccCCcc
Q 040297 590 LTRIHALNLSHNNLT-GTIPTTFSNLKQIESLDLS-YNLLHGKIPSQ 634 (773)
Q Consensus 590 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs-~N~l~~~~p~~ 634 (773)
+++|+.|+|++|.++ +.+|..++.+++|+.|+++ .+.+.|..|..
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 999999999999999 8888999999999999999 44566666644
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=238.41 Aligned_cols=235 Identities=20% Similarity=0.227 Sum_probs=163.9
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEE
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRL 323 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 323 (773)
.+++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+. .+++|++|++++|.++ .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 468999999999998 67778888999999999999998 8887664 4888999999988888 557778888888888
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
++++|++.+.+|..+... ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 888888877777665430 00112333445555555555554 34444555555555555555554
Q ss_pred CCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccC
Q 040297 404 GTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCE 483 (773)
Q Consensus 404 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 483 (773)
+..+....+++|+.|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.+
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 43333233455555555555555555666667777888888887777777777778888888888888888788888888
Q ss_pred CCCCCEEEccCCcCC
Q 040297 484 LKEVRLIDLSHNNLS 498 (773)
Q Consensus 484 l~~L~~L~L~~N~l~ 498 (773)
+++|+.+++..+.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 888888888766554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-27 Score=259.03 Aligned_cols=246 Identities=23% Similarity=0.193 Sum_probs=142.6
Q ss_pred CCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECC
Q 040297 342 RLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLS 421 (773)
Q Consensus 342 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 421 (773)
++|+.|++++|.+++..|..|..+++|++|++++|.+.+..| +..+++|+.|++++|.+++..+.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~------------- 98 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG------------- 98 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-------------
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-------------
Confidence 367777777777776666677777777777777777765444 66667777777776665533221
Q ss_pred CccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcC
Q 040297 422 KNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYI 501 (773)
Q Consensus 422 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 501 (773)
++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..
T Consensus 99 ---------------~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 99 ---------------PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp ---------------TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred ---------------CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 3445555555554433322 2345555555555555544555555555555555555555544
Q ss_pred cchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcc
Q 040297 502 PACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG 581 (773)
Q Consensus 502 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 581 (773)
|..+.. .+++|+.|+|++|.+++
T Consensus 161 ~~~l~~---------------------------------------------------------~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 161 FAELAA---------------------------------------------------------SSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp GGGGGG---------------------------------------------------------GTTTCCEEECTTSCCCE
T ss_pred hHHHhh---------------------------------------------------------hCCcccEEecCCCcccc
Confidence 443321 12355556666666554
Q ss_pred cCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccc-ccCCCCCc
Q 040297 582 EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS-GKIPDRVA 660 (773)
Q Consensus 582 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p~~~~ 660 (773)
..+ ...+++|+.|+|++|.+++..| .|..+++|+.|||++|.+++ +|..+..+++|+.|++++|++. +.+|..+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 321 2245666666666666664333 36666666666666666664 4555666666666666666665 45554444
Q ss_pred ccccCCcCccc-------CCCCCCCCCC
Q 040297 661 QFSTFEEDSYE-------GNPFLCGWPL 681 (773)
Q Consensus 661 ~~~~l~~~~l~-------~Np~lC~~~l 681 (773)
.++.+..+++. +||+.|.|+.
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred hCCCCcEEeccccccccCCCcccccCCc
Confidence 55555555554 7888888753
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=245.31 Aligned_cols=250 Identities=21% Similarity=0.164 Sum_probs=175.6
Q ss_pred CcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEE
Q 040297 221 KLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILA 300 (773)
Q Consensus 221 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 300 (773)
..+.++.++..++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.++ .++...+.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 3567888888887 7787654 57888888888888877788888888888888888887 56655556677777777
Q ss_pred cccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCc-CCCCcchhhcCCCCCcEEEcccCcCC
Q 040297 301 LSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH-LSGRIPRWLGNLSALEDIRMSNNNLE 379 (773)
Q Consensus 301 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 379 (773)
+++|.+++..+..+..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..|.++++|++|++++|.++
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 77777776666666677777777777777765555566666666666666633 33222234555555555555555554
Q ss_pred CCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhc
Q 040297 380 GPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINI 459 (773)
Q Consensus 380 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 459 (773)
. +|....+++|+.|++++|.+++..+..|.++++|+.|++++|++++..+..|..
T Consensus 199 ~-------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 199 E-------------------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp S-------------------------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred c-------------------------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 2 223333455666666666666666667777778888888888887777777778
Q ss_pred CCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCc
Q 040297 460 LPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY 500 (773)
Q Consensus 460 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 500 (773)
+++|+.|+|++|++++..+..+..+++|+.|++++|++...
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 88888888888888876667777888888888888887643
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=250.18 Aligned_cols=267 Identities=22% Similarity=0.314 Sum_probs=139.7
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEc
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQL 325 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 325 (773)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++++.. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 5777777777776 4555443 67777777777776 5654 25666666666666664332 4566666666
Q ss_pred ccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCC
Q 040297 326 DGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGT 405 (773)
Q Consensus 326 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 405 (773)
++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.+.+. |. .+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~-------------- 162 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSE-------------- 162 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTT--------------
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCC--------------
Confidence 6666653 232 33555555555555553 2221 24444444444444421 11 1233
Q ss_pred CCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCC
Q 040297 406 LPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK 485 (773)
Q Consensus 406 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 485 (773)
|+.|++++|.+++.. ..+++|+.|++++|++++ +|. ..++|+.|++++|.++. +|. .++
T Consensus 163 ---------L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~ 221 (622)
T 3g06_A 163 ---------LCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPS 221 (622)
T ss_dssp ---------CCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCT
T ss_pred ---------CCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCC
Confidence 334444444443322 223455555555555553 222 13455666666665552 232 234
Q ss_pred CCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccc
Q 040297 486 EVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI 565 (773)
Q Consensus 486 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (773)
+|+.|++++|++++ +|. .
T Consensus 222 ~L~~L~Ls~N~L~~-lp~-------------------------------------------------------------~ 239 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LPV-------------------------------------------------------------L 239 (622)
T ss_dssp TCCEEECCSSCCSC-CCC-------------------------------------------------------------C
T ss_pred CCCEEEccCCccCc-CCC-------------------------------------------------------------C
Confidence 55566666665543 220 0
Q ss_pred cccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccC
Q 040297 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 638 (773)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 638 (773)
+++|+.|++++|+|+ .+|. .+++|+.|+|++|.|+ .+|..|.++++|+.|+|++|++++.+|..+..+
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 235555666666555 3443 3455666666666665 455556666666666666666665555555443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=248.33 Aligned_cols=248 Identities=22% Similarity=0.271 Sum_probs=175.5
Q ss_pred CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|++++|.+++. |. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence 44555555555544 2232 23455555555555542 232 345555555555555532 22 3455666666
Q ss_pred cCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccC
Q 040297 398 SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI 477 (773)
Q Consensus 398 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 477 (773)
++|.+++..+ . +++|+.|++++|.+++... ..++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +
T Consensus 129 ~~N~l~~lp~-~--l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 129 FGNQLTSLPV-L--PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp CSSCCSCCCC-C--CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCCCcCCC-C--CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C
Confidence 6666554322 1 3567777777777665432 34789999999999995 55 457899999999999985 4
Q ss_pred cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCc
Q 040297 478 PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557 (773)
Q Consensus 478 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (773)
|. .+++|+.|++++|.++. +|..
T Consensus 197 ~~---~~~~L~~L~L~~N~l~~-l~~~----------------------------------------------------- 219 (622)
T 3g06_A 197 PT---LPSELYKLWAYNNRLTS-LPAL----------------------------------------------------- 219 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSS-CCCC-----------------------------------------------------
T ss_pred CC---ccchhhEEECcCCcccc-cCCC-----------------------------------------------------
Confidence 43 35789999999999873 3311
Q ss_pred cccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCccccc
Q 040297 558 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 558 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
+++|+.|++++|++++ +| ..+++|+.|+|++|.|+ .+|. .+++|+.|+|++|+++ .+|..+..
T Consensus 220 --------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~ 282 (622)
T 3g06_A 220 --------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIH 282 (622)
T ss_dssp --------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGG
T ss_pred --------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhh
Confidence 2489999999999995 66 45689999999999999 5665 6789999999999999 77999999
Q ss_pred CCCCCEEEccCCcccccCCCCCcccc
Q 040297 638 LNTLAVFKVAYNNLSGKIPDRVAQFS 663 (773)
Q Consensus 638 l~~L~~L~ls~N~l~~~~p~~~~~~~ 663 (773)
+++|+.|++++|++++.+|..+..+.
T Consensus 283 l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99999999999999999887655444
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-27 Score=242.89 Aligned_cols=248 Identities=20% Similarity=0.201 Sum_probs=163.8
Q ss_pred hcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcC-ccCCchhHh------hCCCCCcEEEccCCccCccCchhh
Q 040297 193 ENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFF-QGHIPVEIG------TYLPGLMDLNLSRNAFNGSIPSSF 265 (773)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~------~~l~~L~~L~L~~n~l~~~~p~~~ 265 (773)
...++|++|++++|.+ .+|..+... |++|++++|.+ .+.+|...+ ..+++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4556778888888877 455544433 77788888877 345565543 126788888888888887777765
Q ss_pred --hCCCCCcEEEeecccCCCccchhHhhcC-----CCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCcc--ccc
Q 040297 266 --ADMKMLERLDISYNQLTGEIPERMATGC-----FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGE--ISD 336 (773)
Q Consensus 266 --~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~ 336 (773)
..+++|++|++++|.+++. |..+.. + ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 7888888888888888844 654433 4 7788888888888877777777888888888888877654 233
Q ss_pred cc--cCCCCCCeeeCcCCcCCCC---cchhhcCCCCCcEEEcccCcCCCCcc-ccccCCCCCcEEEccCCCCCCCCCCCC
Q 040297 337 SL--SNCRLLAGLYLSDNHLSGR---IPRWLGNLSALEDIRMSNNNLEGPIP-IEFCQLDYLTILDLSNNAIFGTLPSCF 410 (773)
Q Consensus 337 ~l--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 410 (773)
.+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+.+..| ..+..+++|+.|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 6777788888888777731 12334566777777777777776554 33455677777777777776 334333
Q ss_pred CCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccc
Q 040297 411 SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450 (773)
Q Consensus 411 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 450 (773)
. ++|+.|++++|++++. |. +..+++|++|++++|+++
T Consensus 273 ~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 273 P-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred c-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 2 5555555555555554 22 445555555555555554
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-27 Score=274.37 Aligned_cols=409 Identities=14% Similarity=0.084 Sum_probs=259.0
Q ss_pred cchhHhhcCCCCCEEEccCCcCccC---Cc------------cCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEE
Q 040297 187 FPNWLVENNTNLETLLLANNSLFGS---FR------------MPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLN 251 (773)
Q Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~---~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 251 (773)
.|..++..+++|++|+++++..... .| .....+++|++|++++|.+++..+..+...+++|++|+
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 3444556677777777777642211 11 11235678888888888887666666654578888888
Q ss_pred ccCC-ccCcc-CchhhhCCCCCcEEEeecccCCCccchhH---hhcCCCccEEEcccCc--CCCc-CcccccCCCCCcEE
Q 040297 252 LSRN-AFNGS-IPSSFADMKMLERLDISYNQLTGEIPERM---ATGCFLLEILALSNNN--LQGH-IFSKKFNLTNLMRL 323 (773)
Q Consensus 252 L~~n-~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~~l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L 323 (773)
+++| .++.. ++..+.++++|++|++++|.+++..+..+ ...+++|+.|++++|. +... .......+++|++|
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence 8888 44432 34445578888888888888765443322 2246688888888886 2211 11112346888888
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCc-------CCCCcchhhcCCCCCcEE-EcccCcCCCCccccccCCCCCcEE
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNH-------LSGRIPRWLGNLSALEDI-RMSNNNLEGPIPIEFCQLDYLTIL 395 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L 395 (773)
++++|...+.++..+..+++|+.|+++.+. +. .++..+.++++|+.+ .+.+... +.++..+..+++|+.|
T Consensus 217 ~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTL 294 (594)
T ss_dssp ECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEE
T ss_pred ecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEE
Confidence 888873322366677778888888865543 22 234467778888887 3433222 2344444567888888
Q ss_pred EccCCCCCCCCCC--CCCCCceeEEECCCccccc-cchhhhcCCCCeeEEeCC---------CCccccccchhhh-cCCC
Q 040297 396 DLSNNAIFGTLPS--CFSPAFIEQVHLSKNKIEG-QLESIIHDSPYLVTLDLS---------YNRFHGSIPNWIN-ILPQ 462 (773)
Q Consensus 396 ~L~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~Ls---------~n~l~~~~~~~~~-~l~~ 462 (773)
++++|.+++.... ...+++|+.|++++| +.. ..+.....+++|++|+++ .+.+++.....+. .+++
T Consensus 295 ~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~ 373 (594)
T 2p1m_B 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373 (594)
T ss_dssp ECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred EccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence 8888876532211 123678888888877 332 233334457888888773 3455543333333 4788
Q ss_pred CcEEEccCccccccCccccc-CCCCCCEEEcc--C----CcCCCcCcc-hhhccCcCccccCCCCCCccccccccccCCC
Q 040297 463 LSSLLLGNNYIEGEIPVQLC-ELKEVRLIDLS--H----NNLSGYIPA-CLVYTSLGEDYHEEGPPTSIWCDRASVYGSP 534 (773)
Q Consensus 463 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (773)
|+.|.+..|.+++.....+. .+++|+.|+++ + +.+++.... .+..
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~--------------------------- 426 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA--------------------------- 426 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH---------------------------
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH---------------------------
Confidence 88888877877765555554 47788888887 3 333311000 0000
Q ss_pred CCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhc-cCCCCeEeCCCCcCCCCCcccc-c
Q 040297 535 CLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY-LTRIHALNLSHNNLTGTIPTTF-S 612 (773)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~ 612 (773)
. ...+++|+.|++++ .+++..+..++. +++|++|+|++|.+++..+..+ .
T Consensus 427 -------------------------l--~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 478 (594)
T 2p1m_B 427 -------------------------I--VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478 (594)
T ss_dssp -------------------------H--HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH
T ss_pred -------------------------H--HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh
Confidence 0 01245888999977 777666666665 8889999999999876655555 6
Q ss_pred cCccCCeeeCccccCcccCCc-ccccCCCCCEEEccCCcccc
Q 040297 613 NLKQIESLDLSYNLLHGKIPS-QLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 613 ~l~~L~~LdLs~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~~ 653 (773)
.+++|+.|+|++|++++..+. ....+++|+.|++++|+++.
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 789999999999998655443 34557889999999998843
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-27 Score=242.85 Aligned_cols=248 Identities=23% Similarity=0.209 Sum_probs=172.5
Q ss_pred ccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccC-ccCchhhh-------CCCCCcEEEeecccCCCccch
Q 040297 216 IHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFN-GSIPSSFA-------DMKMLERLDISYNQLTGEIPE 287 (773)
Q Consensus 216 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~~~ 287 (773)
+...++|++|++++|.+ .+|..+.. .|++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34567889999999998 78887776 3888899999884 45666665 789999999999999888887
Q ss_pred hHh-hcCCCccEEEcccCcCCCcCcccccCC-----CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCC--cc
Q 040297 288 RMA-TGCFLLEILALSNNNLQGHIFSKKFNL-----TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR--IP 359 (773)
Q Consensus 288 ~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~ 359 (773)
.++ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..++.+++|++|++++|++.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 653 5688999999999999887 6666665 8899999999999887778888999999999999987754 23
Q ss_pred hhh--cCCCCCcEEEcccCcCCCC--cc-ccccCCCCCcEEEccCCCCCCCCCC-C-CCCCceeEEECCCccccccchhh
Q 040297 360 RWL--GNLSALEDIRMSNNNLEGP--IP-IEFCQLDYLTILDLSNNAIFGTLPS-C-FSPAFIEQVHLSKNKIEGQLESI 432 (773)
Q Consensus 360 ~~~--~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~-~~~~~L~~L~l~~n~l~~~~~~~ 432 (773)
..+ ..+++|++|++++|.+.+. .+ ..+..+++|+.|++++|.+.+..|. . ..+++|+.|++++|.++. +|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhh
Confidence 344 7888999999999988732 12 3345778888888888888776532 1 224455555555555542 2222
Q ss_pred hcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCcccc
Q 040297 433 IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIE 474 (773)
Q Consensus 433 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 474 (773)
+. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 22 3444444444444432 22 334444444444444443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=226.29 Aligned_cols=209 Identities=22% Similarity=0.233 Sum_probs=175.6
Q ss_pred CceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEc
Q 040297 413 AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDL 492 (773)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 492 (773)
++++.|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46778888888887777777888888999999999888776777888899999999999998877788889999999999
Q ss_pred cCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEE
Q 040297 493 SHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGI 572 (773)
Q Consensus 493 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 572 (773)
++|++.+..+..+.. +++|++|
T Consensus 108 ~~n~l~~~~~~~~~~----------------------------------------------------------l~~L~~L 129 (276)
T 2z62_A 108 VETNLASLENFPIGH----------------------------------------------------------LKTLKEL 129 (276)
T ss_dssp TTSCCCCSTTCCCTT----------------------------------------------------------CTTCCEE
T ss_pred CCCCccccCchhccc----------------------------------------------------------CCCCCEE
Confidence 999887544433221 4588999
Q ss_pred ecccCcCccc-CChhhhccCCCCeEeCCCCcCCCCCccccccCccCC----eeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 573 DLSCNKLTGE-IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIE----SLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 573 ~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
++++|++++. +|..++.+++|++|+|++|++++..+..|..+++|+ .|++++|++++..+..+.. .+|+.|+++
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~ 208 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALD 208 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECC
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECC
Confidence 9999999863 688999999999999999999988888888888887 8999999999777766554 489999999
Q ss_pred CCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
+|++++..+..+..+++++.+++++||+.|+|+
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999998888777889999999999999999996
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=219.70 Aligned_cols=185 Identities=21% Similarity=0.245 Sum_probs=129.9
Q ss_pred CeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCC
Q 040297 438 YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE 517 (773)
Q Consensus 438 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~ 517 (773)
++++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------- 107 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ---------- 107 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc----------
Confidence 4555555555555444445555666666666666665444444566666666666666665433322221
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEe
Q 040297 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 597 (773)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (773)
+++|++|++++|++++..+..|+.+++|++|+
T Consensus 108 ------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 108 ------------------------------------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp ------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 34677777777777766666777888888888
Q ss_pred CCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCC
Q 040297 598 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 598 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
|++|.+++..+..|+.+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++++.+++.+|||.|
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 88888886666667888888888888888887777778888888888888888887777667778888888888889888
Q ss_pred CCC
Q 040297 678 GWP 680 (773)
Q Consensus 678 ~~~ 680 (773)
+|.
T Consensus 220 ~c~ 222 (270)
T 2o6q_A 220 TCN 222 (270)
T ss_dssp SSS
T ss_pred CCc
Confidence 885
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-25 Score=246.57 Aligned_cols=235 Identities=22% Similarity=0.186 Sum_probs=132.0
Q ss_pred CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+.. ..++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 355555555555555555555556666666666666554433 556666666666666665322 2267777777
Q ss_pred cCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhh-cCCCCcEEEccCcccccc
Q 040297 398 SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN-ILPQLSSLLLGNNYIEGE 476 (773)
Q Consensus 398 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 476 (773)
++|.+.+..+.. +++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus 107 ~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 107 ANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 777766544322 23455555555555555554555555555555555555554444443 345555555555555433
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
. ....++
T Consensus 185 ~--~~~~l~----------------------------------------------------------------------- 191 (487)
T 3oja_A 185 K--GQVVFA----------------------------------------------------------------------- 191 (487)
T ss_dssp E--CCCCCT-----------------------------------------------------------------------
T ss_pred c--ccccCC-----------------------------------------------------------------------
Confidence 1 112233
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc-ccCCccc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPSQL 635 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l 635 (773)
+|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+
T Consensus 192 -----------~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 192 -----------KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp -----------TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred -----------CCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 55556666666654 33336666666666666666663 5555666666666677666666 5556666
Q ss_pred ccCCCCCEEEcc
Q 040297 636 TVLNTLAVFKVA 647 (773)
Q Consensus 636 ~~l~~L~~L~ls 647 (773)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 666666666664
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=219.05 Aligned_cols=208 Identities=22% Similarity=0.218 Sum_probs=142.2
Q ss_pred ccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcE
Q 040297 386 FCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSS 465 (773)
Q Consensus 386 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 465 (773)
+..+++++.++++++.++...+.. .+. ++.|++++|.+++..+..+..+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~------------------------l~~L~L~~N~l~~~~~~~~~~l~~L~~ 59 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKD------------------------TTILHLSENLLYTFSLATLMPYTRLTQ 59 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTT------------------------CCEEECTTSCCSEEEGGGGTTCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCC------------------------CCEEEcCCCcCCccCHHHhhcCCCCCE
Confidence 455667777777777665433222 134 445555555554444445555555555
Q ss_pred EEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCC
Q 040297 466 LLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMG 545 (773)
Q Consensus 466 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (773)
|++++|.+++..+ ...+++|+.|++++|+++ .+|..+..
T Consensus 60 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~-------------------------------------- 98 (290)
T 1p9a_G 60 LNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQT-------------------------------------- 98 (290)
T ss_dssp EECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTT--------------------------------------
T ss_pred EECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhcc--------------------------------------
Confidence 5555555553322 145666666666666665 33332211
Q ss_pred CcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccc
Q 040297 546 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 625 (773)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 625 (773)
+++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 99 --------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 99 --------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp --------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred --------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 346777788888887666677888888888888888888777777888888888899888
Q ss_pred cCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 626 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
++++..+..|..+++|+.|++++|+++ .+|..+....+++.+++.+|||.|+|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 888777777788888999999999888 4555566777888899999999998854
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=214.72 Aligned_cols=222 Identities=21% Similarity=0.260 Sum_probs=156.4
Q ss_pred EEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEccc
Q 040297 224 ILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN 303 (773)
Q Consensus 224 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 303 (773)
..+..+..+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence 3444555555 5565432 46788888888887766667778888888888888777 55555555677888888888
Q ss_pred CcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCC-cchhhcCCCCCcEEEcccCcCCCCc
Q 040297 304 NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR-IPRWLGNLSALEDIRMSNNNLEGPI 382 (773)
Q Consensus 304 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~ 382 (773)
|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 888777777777888888888888888766666677888888888888888763 4777888888888888888887766
Q ss_pred cccccCCCCCc----EEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccc
Q 040297 383 PIEFCQLDYLT----ILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450 (773)
Q Consensus 383 ~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 450 (773)
+..+..+++|+ .|++++|.+.+..+..+...+|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 66666655555 777777777766665555556666666666666555555555555666666655555
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=206.53 Aligned_cols=206 Identities=21% Similarity=0.241 Sum_probs=162.9
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccC
Q 040297 391 YLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGN 470 (773)
Q Consensus 391 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 470 (773)
..+.++++++.++.. |..+ ++.++.|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCcc-CCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 456677777766643 3222 25677777777777777777788888888888888888866566677888888888888
Q ss_pred ccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceE
Q 040297 471 NYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETV 550 (773)
Q Consensus 471 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (773)
|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence 8888766677788888999999988887655544332
Q ss_pred EEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCccc
Q 040297 551 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630 (773)
Q Consensus 551 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 630 (773)
+++|++|+|++|++++..+..|+.+++|++|+|++|.+++..+..|.++++|+.|+|++|++++.
T Consensus 132 ---------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 132 ---------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp ---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 35888999999999876666788999999999999999987777899999999999999999987
Q ss_pred CCcccccCCCCCEEEccCCcccccCC
Q 040297 631 IPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 631 ~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
.+..+..+++|+.|++++|++....+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CHHHhccccCCCEEEecCCCeeCCCc
Confidence 77788999999999999999875443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-23 Score=210.52 Aligned_cols=224 Identities=19% Similarity=0.229 Sum_probs=161.4
Q ss_pred CCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCc
Q 040297 344 LAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKN 423 (773)
Q Consensus 344 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 423 (773)
+..+++..+.+.... ....+++|+.|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-------------------- 76 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-------------------- 76 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC--------------------
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC--------------------
Confidence 334445555444332 234456666666666665521 23555666666666665544
Q ss_pred cccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcc
Q 040297 424 KIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPA 503 (773)
Q Consensus 424 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 503 (773)
+. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 77 ---~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 77 ---DI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp ---CC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ---Cc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 32 2456677778888888877766666677788888888888888876666678888888888888888755443
Q ss_pred hhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccC
Q 040297 504 CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI 583 (773)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 583 (773)
.+.. +++|+.|++++|++++..
T Consensus 152 ~~~~----------------------------------------------------------l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 152 VFDK----------------------------------------------------------LTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TTTT----------------------------------------------------------CTTCCEEECCSSCCCCCC
T ss_pred Hhcc----------------------------------------------------------CccCCEEECCCCCcCccC
Confidence 3322 347888888888888777
Q ss_pred ChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcc
Q 040297 584 PTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQ 661 (773)
Q Consensus 584 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 661 (773)
+..++.+++|++|+|++|.+++..|..|+.+++|+.|++++|++.+.. ++|+.++++.|.++|.+|..++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCcccc
Confidence 777889999999999999999888888899999999999999988654 46888899999999999986543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-22 Score=204.68 Aligned_cols=204 Identities=22% Similarity=0.263 Sum_probs=127.4
Q ss_pred hhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCee
Q 040297 361 WLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLV 440 (773)
Q Consensus 361 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 440 (773)
.+..+++++.++++++.++ .+|..+. ++++.|++++|.+.+..+. .+.++++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~-----------------------~~~~l~~L~ 58 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLA-----------------------TLMPYTRLT 58 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGG-----------------------GGTTCTTCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHH-----------------------HhhcCCCCC
Confidence 3677899999999999998 4555553 6899999999988754443 344445555
Q ss_pred EEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCC
Q 040297 441 TLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPP 520 (773)
Q Consensus 441 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~ 520 (773)
+|++++|.+++..+. +.+++|++|++++|+++ .+|..+..+++|++|++++|++++..|..+..
T Consensus 59 ~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------- 122 (290)
T 1p9a_G 59 QLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------- 122 (290)
T ss_dssp EEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-------------
T ss_pred EEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-------------
Confidence 555555555432221 34555555555555555 44555555666666666666665433333322
Q ss_pred CccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCC
Q 040297 521 TSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSH 600 (773)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 600 (773)
+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 123 ---------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 123 ---------------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp ---------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ---------------------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 23566666666666655555566666777777777
Q ss_pred CcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccc
Q 040297 601 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652 (773)
Q Consensus 601 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 652 (773)
|+|++..+..|..+++|+.|+|++|+++ .+|..+....+|+.+++++|++.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 7776555555666777777777777766 55556666666777777777664
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=207.14 Aligned_cols=228 Identities=18% Similarity=0.174 Sum_probs=168.2
Q ss_pred CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
.++..+++..+.+.+.. ....+++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 34555667777666443 356789999999999998843 3588899999999999999863 36788888888888
Q ss_pred cCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccC
Q 040297 398 SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI 477 (773)
Q Consensus 398 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 477 (773)
++|.+++..+. .+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 93 ~~n~l~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 149 (272)
T 3rfs_A 93 TGNQLQSLPNG-----------------------VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149 (272)
T ss_dssp TTSCCCCCCTT-----------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCccCccChh-----------------------HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC
Confidence 88877654443 3445566666666666666555555666677777777777776655
Q ss_pred cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCc
Q 040297 478 PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557 (773)
Q Consensus 478 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (773)
+..+..+++|+.|++++|++++..+..+..
T Consensus 150 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------------- 179 (272)
T 3rfs_A 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDK-------------------------------------------------- 179 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------------------------------
T ss_pred HHHhccCccCCEEECCCCCcCccCHHHhcC--------------------------------------------------
Confidence 556677777777777777776544433322
Q ss_pred cccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCccccc
Q 040297 558 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 558 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
+++|+.|++++|++++..|..++.+++|++|+|++|.+.+. +++|+.|+++.|.++|.+|..++.
T Consensus 180 --------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 180 --------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp --------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred --------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 34778888888888877777788999999999999988854 457889999999999999988776
Q ss_pred CC
Q 040297 638 LN 639 (773)
Q Consensus 638 l~ 639 (773)
+.
T Consensus 245 ~~ 246 (272)
T 3rfs_A 245 VA 246 (272)
T ss_dssp BC
T ss_pred cC
Confidence 54
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-23 Score=222.71 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=75.7
Q ss_pred EEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcc----hhhcCCC-CCcEEEcccCcCCCCccccccCC-----CC
Q 040297 322 RLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIP----RWLGNLS-ALEDIRMSNNNLEGPIPIEFCQL-----DY 391 (773)
Q Consensus 322 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 391 (773)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777777666666667777777777776555 5666676 77777777777776666555543 66
Q ss_pred CcEEEccCCCCCCCCCCCCC-----C-CceeEEECCCccccccchhhhc----C-CCCeeEEeCCCCccc
Q 040297 392 LTILDLSNNAIFGTLPSCFS-----P-AFIEQVHLSKNKIEGQLESIIH----D-SPYLVTLDLSYNRFH 450 (773)
Q Consensus 392 L~~L~L~~n~l~~~~~~~~~-----~-~~L~~L~l~~n~l~~~~~~~~~----~-~~~L~~L~Ls~n~l~ 450 (773)
|+.|++++|.+++..+..+. . ++|+.|++++|.+++..+..+. . .++|++|++++|.++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 77777777766544333111 1 3455555555554444332221 1 234444444444444
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-23 Score=222.49 Aligned_cols=201 Identities=21% Similarity=0.197 Sum_probs=116.4
Q ss_pred EEcccCcCCCcCcccccCCCCCcEEEcccccCCcccc----ccccCCC-CCCeeeCcCCcCCCCcchhhcCC-----CCC
Q 040297 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEIS----DSLSNCR-LLAGLYLSDNHLSGRIPRWLGNL-----SAL 368 (773)
Q Consensus 299 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L 368 (773)
+++++|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566777776666655555567777777777765554 5566666 67777777777766555555553 677
Q ss_pred cEEEcccCcCCCCcccccc----CC-CCCcEEEccCCCCCCCCCCCCC------CCceeEEECCCccccccch----hhh
Q 040297 369 EDIRMSNNNLEGPIPIEFC----QL-DYLTILDLSNNAIFGTLPSCFS------PAFIEQVHLSKNKIEGQLE----SII 433 (773)
Q Consensus 369 ~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~~~----~~~ 433 (773)
++|++++|.+.+..+..+. .+ ++|+.|++++|.+++..+..+. +++|++|++++|.+++... ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 7777777777655554333 33 6777777777776654443221 2467777777777764332 333
Q ss_pred cCCC-CeeEEeCCCCccccccchhhh----cC-CCCcEEEccCcccccc----CcccccC-CCCCCEEEccCCcCCC
Q 040297 434 HDSP-YLVTLDLSYNRFHGSIPNWIN----IL-PQLSSLLLGNNYIEGE----IPVQLCE-LKEVRLIDLSHNNLSG 499 (773)
Q Consensus 434 ~~~~-~L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~ 499 (773)
...+ +|++|++++|++++..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|+.|++++|.+++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 4443 666666666666654443332 23 3566666666655532 2222322 2345555555555543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-22 Score=200.24 Aligned_cols=180 Identities=20% Similarity=0.197 Sum_probs=115.2
Q ss_pred ceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEcc
Q 040297 414 FIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLS 493 (773)
Q Consensus 414 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 493 (773)
..+.++++++.++..+.. +. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 455667777766644332 21 456777777777776666666667777777777777766666666667777777777
Q ss_pred CCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEe
Q 040297 494 HNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGID 573 (773)
Q Consensus 494 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 573 (773)
+|++++..+..+.. +++|++|+
T Consensus 92 ~n~l~~~~~~~~~~----------------------------------------------------------l~~L~~L~ 113 (251)
T 3m19_A 92 NNQLASLPLGVFDH----------------------------------------------------------LTQLDKLY 113 (251)
T ss_dssp TSCCCCCCTTTTTT----------------------------------------------------------CTTCCEEE
T ss_pred CCcccccChhHhcc----------------------------------------------------------cCCCCEEE
Confidence 77666443333221 23666677
Q ss_pred cccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc
Q 040297 574 LSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 574 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 653 (773)
|++|++++..+..|..+++|++|+|++|++++..+..|+.+++|+.|||++|++++..|..+..+++|+.|++++|++.+
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 77777665555556666677777777777765555566666777777777777766666666666667777777766665
Q ss_pred c
Q 040297 654 K 654 (773)
Q Consensus 654 ~ 654 (773)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-23 Score=225.32 Aligned_cols=247 Identities=19% Similarity=0.227 Sum_probs=165.5
Q ss_pred cccccccCCCCCCeeeCcCCcCCCCcch----hhcCCCCCcEEEcccCcC---CCCccccc-------cCCCCCcEEEcc
Q 040297 333 EISDSLSNCRLLAGLYLSDNHLSGRIPR----WLGNLSALEDIRMSNNNL---EGPIPIEF-------CQLDYLTILDLS 398 (773)
Q Consensus 333 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~L~ 398 (773)
.++..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+ .+.+|..+ ..+++|+.|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3455666777788888888777755333 355677777777777533 33344333 455566666666
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhh----cC---------CCCcE
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN----IL---------PQLSS 465 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~ 465 (773)
+|.+.+... ..++..+..+++|++|++++|.+++..+..+. .+ ++|++
T Consensus 103 ~n~l~~~~~-------------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 103 DNAFGPTAQ-------------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp SCCCCTTTH-------------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred CCcCCHHHH-------------------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 555442100 03455666777777777777777644333333 33 78888
Q ss_pred EEccCcccc-ccCc---ccccCCCCCCEEEccCCcCCCc-----CcchhhccCcCccccCCCCCCccccccccccCCCCC
Q 040297 466 LLLGNNYIE-GEIP---VQLCELKEVRLIDLSHNNLSGY-----IPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCL 536 (773)
Q Consensus 466 L~L~~n~l~-~~~~---~~~~~l~~L~~L~L~~N~l~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (773)
|++++|+++ +.++ ..+..+++|+.|++++|+++.. .|..+.
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~------------------------------ 213 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA------------------------------ 213 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG------------------------------
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh------------------------------
Confidence 888888876 3333 3566777888888888877621 111111
Q ss_pred CCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCc----ccCChhhhccCCCCeEeCCCCcCCCC----Cc
Q 040297 537 PTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT----GEIPTQIGYLTRIHALNLSHNNLTGT----IP 608 (773)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p 608 (773)
.+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|
T Consensus 214 ----------------------------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 214 ----------------------------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp ----------------------------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred ----------------------------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 1357888888888885 56777888888899999999988865 56
Q ss_pred cccc--cCccCCeeeCccccCcc----cCCccc-ccCCCCCEEEccCCcccccCC
Q 040297 609 TTFS--NLKQIESLDLSYNLLHG----KIPSQL-TVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 609 ~~~~--~l~~L~~LdLs~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~~p 656 (773)
..+. .+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 6663 38889999999999987 477777 668899999999999887664
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-22 Score=214.42 Aligned_cols=251 Identities=15% Similarity=0.192 Sum_probs=144.0
Q ss_pred CcEEEcccccCCccccccccCC--CCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCC-ccccccCCCCCcEEE
Q 040297 320 LMRLQLDGNNFTGEISDSLSNC--RLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGP-IPIEFCQLDYLTILD 396 (773)
Q Consensus 320 L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 396 (773)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|+.|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666555544 2333333 4555555555555544333 33455555555555554433 333444444444444
Q ss_pred ccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCC-ccccc-cchhhhcCCCCcEEEccCc-cc
Q 040297 397 LSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYN-RFHGS-IPNWINILPQLSSLLLGNN-YI 473 (773)
Q Consensus 397 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l 473 (773)
+++| .+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+
T Consensus 125 L~~~-----------------------~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 125 LEGL-----------------------RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp CTTC-----------------------BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred CcCc-----------------------ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 4444 444445555666677777777776 45542 4555666777777777777 66
Q ss_pred ccc-CcccccCCC-CCCEEEccCC--cCC-CcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcc
Q 040297 474 EGE-IPVQLCELK-EVRLIDLSHN--NLS-GYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEE 548 (773)
Q Consensus 474 ~~~-~~~~~~~l~-~L~~L~L~~N--~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (773)
++. ++..+..++ +|++|++++| .++ +.+|..+..
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~----------------------------------------- 220 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR----------------------------------------- 220 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-----------------------------------------
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-----------------------------------------
Confidence 643 455566667 7777777777 343 222332221
Q ss_pred eEEEEecCccccccccccccccEEecccCc-CcccCChhhhccCCCCeEeCCCCc-CCCCCccccccCccCCeeeCcccc
Q 040297 549 TVQFTTKNMSYYYQGRILTSMSGIDLSCNK-LTGEIPTQIGYLTRIHALNLSHNN-LTGTIPTTFSNLKQIESLDLSYNL 626 (773)
Q Consensus 549 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~ 626 (773)
+++|+.|++++|. +++..+..++.+++|++|++++|. ++......++++++|+.|++++|
T Consensus 221 -----------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 221 -----------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp -----------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred -----------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 3467777777777 666666777777888888888774 22221225677788888888877
Q ss_pred CcccCCcccccC-CCCCEEEccCCcccccCCCCC
Q 040297 627 LHGKIPSQLTVL-NTLAVFKVAYNNLSGKIPDRV 659 (773)
Q Consensus 627 l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~~ 659 (773)
+.. +.+..+ ..+..|++++|++++..|..+
T Consensus 283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 VPD---GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred cCH---HHHHHHHhhCcceEEecccCccccCCcc
Confidence 322 233333 235666678888887777654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-23 Score=222.57 Aligned_cols=246 Identities=19% Similarity=0.220 Sum_probs=164.2
Q ss_pred CcccccCCCCCcEEEcccccCCcccc----ccccCCCCCCeeeCcCCcCC---CCcchhh-------cCCCCCcEEEccc
Q 040297 310 IFSKKFNLTNLMRLQLDGNNFTGEIS----DSLSNCRLLAGLYLSDNHLS---GRIPRWL-------GNLSALEDIRMSN 375 (773)
Q Consensus 310 ~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~---~~~~~~~-------~~l~~L~~L~L~~ 375 (773)
++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34556778999999999999987644 44778999999999997543 4455544 7899999999999
Q ss_pred CcCCC----CccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCC---------CCeeEE
Q 040297 376 NNLEG----PIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS---------PYLVTL 442 (773)
Q Consensus 376 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---------~~L~~L 442 (773)
|.+.+ .++..+..+++|+.|++++|.+....+..+ +..+..+ ++|++|
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l-------------------~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-------------------ARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH-------------------HHHHHHHHHHHHHHTCCCCCEE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH-------------------HHHHHHHhhhhhcccCCCCcEE
Confidence 99987 366778889999999999998753322111 1112122 556666
Q ss_pred eCCCCccc-cccc---hhhhcCCCCcEEEccCccccc-----cCcccccCCCCCCEEEccCCcCC----CcCcchhhccC
Q 040297 443 DLSYNRFH-GSIP---NWINILPQLSSLLLGNNYIEG-----EIPVQLCELKEVRLIDLSHNNLS----GYIPACLVYTS 509 (773)
Q Consensus 443 ~Ls~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~p~~~~~~~ 509 (773)
++++|+++ +.++ ..+..+++|++|++++|+++. ..+..+..+++|+.|+|++|.++ +.+|..+..
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-- 242 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-- 242 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG--
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc--
Confidence 66666665 2233 344556666666666666652 22335666666777777776664 233333322
Q ss_pred cCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCccc----CCh
Q 040297 510 LGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE----IPT 585 (773)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~ 585 (773)
+++|+.|+|++|.+++. +|.
T Consensus 243 --------------------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 243 --------------------------------------------------------WPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp --------------------------------------------------------CTTCCEEECTTCCCCHHHHHHHHH
T ss_pred --------------------------------------------------------CCCcCEEECCCCCCchhhHHHHHH
Confidence 23666777777777654 455
Q ss_pred hhh--ccCCCCeEeCCCCcCCC----CCcccc-ccCccCCeeeCccccCcccCC
Q 040297 586 QIG--YLTRIHALNLSHNNLTG----TIPTTF-SNLKQIESLDLSYNLLHGKIP 632 (773)
Q Consensus 586 ~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~LdLs~N~l~~~~p 632 (773)
.+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 553 37778888888888876 366666 567888888888888876653
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=196.17 Aligned_cols=201 Identities=12% Similarity=0.112 Sum_probs=143.5
Q ss_pred CceeEEECCCccccccchhhhcCCCCeeEEeCCCCc-cccccchhhhcCCCCcEEEccC-ccccccCcccccCCCCCCEE
Q 040297 413 AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNR-FHGSIPNWINILPQLSSLLLGN-NYIEGEIPVQLCELKEVRLI 490 (773)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 490 (773)
+.++.|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 466677777777777666677778888888888886 7755556777788888888887 78876666777888888888
Q ss_pred EccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCcccccccccccccc
Q 040297 491 DLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMS 570 (773)
Q Consensus 491 ~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 570 (773)
++++|++++ +|. +..+. .++.|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~-------------------------------------------------------~L~~L~ 133 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVY-------------------------------------------------------STDIFF 133 (239)
T ss_dssp EEEEECCCS-CCC-CTTCC-------------------------------------------------------BCCSEE
T ss_pred eCCCCCCcc-ccc-ccccc-------------------------------------------------------cccccc
Confidence 888888775 443 22111 012234
Q ss_pred EEecccC-cCcccCChhhhccCCCC-eEeCCCCcCCCCCccccccCccCCeeeCcccc-CcccCCcccccC-CCCCEEEc
Q 040297 571 GIDLSCN-KLTGEIPTQIGYLTRIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL-LHGKIPSQLTVL-NTLAVFKV 646 (773)
Q Consensus 571 ~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l-~~L~~L~l 646 (773)
.|++++| ++++..+..|..+++|+ +|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.|++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 8888888 88866666788888888 8888888888444444555 788888888884 887777778888 88888888
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNP 674 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np 674 (773)
++|++++..+. .+..++.+.+.+++
T Consensus 213 ~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 213 SQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCccccCChh---HhccCceeeccCcc
Confidence 88888754443 56666666666554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=203.86 Aligned_cols=227 Identities=19% Similarity=0.175 Sum_probs=156.7
Q ss_pred CCCEEECCCCCCccccchhH--hhcCCCCCEEEccCCcCccCCccCc--cCCCCcCEEEccCCcCccCCc---hhHhhCC
Q 040297 172 DLKNADLSHLNLSGNFPNWL--VENNTNLETLLLANNSLFGSFRMPI--HSYQKLAILDVSKNFFQGHIP---VEIGTYL 244 (773)
Q Consensus 172 ~L~~L~L~~~~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l 244 (773)
.++.+.+.++.++......+ +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ...+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46777777777654321111 1235679999999999988888877 888999999999999886544 1222247
Q ss_pred CCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCc--cchhH-hhcCCCccEEEcccCcCCCcCcc---cccCCC
Q 040297 245 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGE--IPERM-ATGCFLLEILALSNNNLQGHIFS---KKFNLT 318 (773)
Q Consensus 245 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~ 318 (773)
++|++|++++|.+.+..+..|+.+++|++|++++|++.+. ++... ...+++|++|++++|.++..... .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8999999999999888888888999999999999987632 22211 23467777888888777642211 235667
Q ss_pred CCcEEEcccccCCccccccccCC---CCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEE
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNC---RLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTIL 395 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 395 (773)
+|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 77777777777776666666555 57777777777777 4555443 6777777777777643 22 4566777777
Q ss_pred EccCCCCC
Q 040297 396 DLSNNAIF 403 (773)
Q Consensus 396 ~L~~n~l~ 403 (773)
++++|+++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 77777665
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-22 Score=211.35 Aligned_cols=256 Identities=15% Similarity=0.187 Sum_probs=175.9
Q ss_pred CCccEEEcccCcCCCcCcccccCC--CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCC-cchhhcCCCCCcE
Q 040297 294 FLLEILALSNNNLQGHIFSKKFNL--TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR-IPRWLGNLSALED 370 (773)
Q Consensus 294 ~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 370 (773)
..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34889999999887 4455556 8999999999999977665 56789999999999999865 7888999999999
Q ss_pred EEcccCcCCCCccccccCCCCCcEEEccCC-CCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCC-c
Q 040297 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNN-AIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYN-R 448 (773)
Q Consensus 371 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n-~ 448 (773)
|++++|.+.+..+..+..+++|+.|++++| .+++. ..+..+.++++|++|++++| .
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHHHHHCTTCCEEECCCCTT
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHHHhcCCCCCEEcCCCCCC
Confidence 999999998888888888999999999988 45421 12334455566666666666 5
Q ss_pred cccc-cchhhhcCC-CCcEEEccCc--ccc-ccCcccccCCCCCCEEEccCCc-CCCcCcchhhccCcCccccCCCCCCc
Q 040297 449 FHGS-IPNWINILP-QLSSLLLGNN--YIE-GEIPVQLCELKEVRLIDLSHNN-LSGYIPACLVYTSLGEDYHEEGPPTS 522 (773)
Q Consensus 449 l~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~~~~~~~~~ 522 (773)
+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--------------- 245 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--------------- 245 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG---------------
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC---------------
Confidence 5543 345555566 6666666666 333 2344455566666666666666 44444433322
Q ss_pred cccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCc-CcccCChhhhccCCCCeEeCCCC
Q 040297 523 IWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK-LTGEIPTQIGYLTRIHALNLSHN 601 (773)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N 601 (773)
+++|+.|++++|. +.......++.+++|+.|++++|
T Consensus 246 -------------------------------------------l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 -------------------------------------------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp -------------------------------------------CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred -------------------------------------------CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 2366666776663 22222235677788888888877
Q ss_pred cCCCCCccccccC-ccCCeeeCccccCcccCCccccc
Q 040297 602 NLTGTIPTTFSNL-KQIESLDLSYNLLHGKIPSQLTV 637 (773)
Q Consensus 602 ~l~~~~p~~~~~l-~~L~~LdLs~N~l~~~~p~~l~~ 637 (773)
++ .+.+..+ .+++.|++++|++++..|..+..
T Consensus 283 -i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 -VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp -SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred -cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 33 2334444 34777778888888887776554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-21 Score=191.27 Aligned_cols=111 Identities=21% Similarity=0.295 Sum_probs=58.9
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
+|+.|+|++|++++..+..|+.+++|++|+|++|.+++..+..|+.+++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 45555555555554444445555555555555555554444445555555555555555554444455555555555555
Q ss_pred CCcccccCCCCCcccccCCcCcccCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 678 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~ 678 (773)
+|++++..|..+..+++++.+++.+||+.|.
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5555555554445555555555555555554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=200.09 Aligned_cols=208 Identities=17% Similarity=0.296 Sum_probs=110.0
Q ss_pred eeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCcccc
Q 040297 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIE 426 (773)
Q Consensus 347 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 426 (773)
+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+
T Consensus 24 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~------------------- 80 (308)
T 1h6u_A 24 IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP------------------- 80 (308)
T ss_dssp HHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-------------------
T ss_pred HHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-------------------
Confidence 3444555543322 3456677777777777764 33 46667777777777776654333
Q ss_pred ccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhh
Q 040297 427 GQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLV 506 (773)
Q Consensus 427 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 506 (773)
+..+++|++|++++|++++. + .+..+++|++|++++|++++. + .+..+++|+.|++++|++++..+ +.
T Consensus 81 ------~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~ 148 (308)
T 1h6u_A 81 ------LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LA 148 (308)
T ss_dssp ------GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred ------HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--cc
Confidence 34444455555555544432 2 344455555555555555432 2 24555555555555555543211 11
Q ss_pred ccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChh
Q 040297 507 YTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ 586 (773)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 586 (773)
.+++|+.|++++|++++. +.
T Consensus 149 ----------------------------------------------------------~l~~L~~L~l~~n~l~~~-~~- 168 (308)
T 1h6u_A 149 ----------------------------------------------------------GLTNLQYLSIGNAQVSDL-TP- 168 (308)
T ss_dssp ----------------------------------------------------------GCTTCCEEECCSSCCCCC-GG-
T ss_pred ----------------------------------------------------------CCCCccEEEccCCcCCCC-hh-
Confidence 123555555555555532 22
Q ss_pred hhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc
Q 040297 587 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 587 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 653 (773)
+..+++|+.|++++|.+++..+ +..+++|+.|+|++|++++..| +..+++|+.|++++|++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 5555666666666666653332 5556666666666666654432 5556666666666666554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=200.91 Aligned_cols=226 Identities=17% Similarity=0.143 Sum_probs=156.2
Q ss_pred CCcCEEEccCCcCccCCchhHh--hCCCCCcEEEccCCccCccCchhh--hCCCCCcEEEeecccCCCccc---hhHhhc
Q 040297 220 QKLAILDVSKNFFQGHIPVEIG--TYLPGLMDLNLSRNAFNGSIPSSF--ADMKMLERLDISYNQLTGEIP---ERMATG 292 (773)
Q Consensus 220 ~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~~---~~~~~~ 292 (773)
..++.+.+.++.+....-..+. ..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466777777665421111111 114679999999999998888887 889999999999999986544 222235
Q ss_pred CCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCcc--c--cccccCCCCCCeeeCcCCcCCCCcch----hhcC
Q 040297 293 CFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGE--I--SDSLSNCRLLAGLYLSDNHLSGRIPR----WLGN 364 (773)
Q Consensus 293 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~ 364 (773)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 88999999999999888888888999999999999987652 2 2234678899999999999873 333 3567
Q ss_pred CCCCcEEEcccCcCCCCccccccCC---CCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeE
Q 040297 365 LSALEDIRMSNNNLEGPIPIEFCQL---DYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVT 441 (773)
Q Consensus 365 l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 441 (773)
+++|++|++++|.+.+..|..+..+ ++|+.|++++|.++. +|..+. ++|+.|++++|++++... +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~-~~L~~L~Ls~N~l~~~~~--~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP-AKLRVLDLSSNRLNRAPQ--PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC-SCCSCEECCSCCCCSCCC--TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc-CCCCEEECCCCcCCCCch--hhhCCCccE
Confidence 7899999999999887777776665 588888888888773 343321 455555555555554311 334444444
Q ss_pred EeCCCCccc
Q 040297 442 LDLSYNRFH 450 (773)
Q Consensus 442 L~Ls~n~l~ 450 (773)
|++++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 444444443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=191.36 Aligned_cols=178 Identities=17% Similarity=0.138 Sum_probs=83.6
Q ss_pred CCcEEEccCCccCccCchhhhCCCCCcEEEeeccc-CCCccchhHhhcCCCccEEEccc-CcCCCcCcccccCCCCCcEE
Q 040297 246 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQ-LTGEIPERMATGCFLLEILALSN-NNLQGHIFSKKFNLTNLMRL 323 (773)
Q Consensus 246 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 323 (773)
++++|++++|++++..+..|.++++|++|++++|. ++ .++...+..+++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666666655555455555666666666554 44 44443333344444444444 44444333344444444444
Q ss_pred EcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCc---EEEcccC-cCCCCccccccCCCCCc-EEEcc
Q 040297 324 QLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALE---DIRMSNN-NLEGPIPIEFCQLDYLT-ILDLS 398 (773)
Q Consensus 324 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~ 398 (773)
++++|+++ + +|. +..+++|+ +|++++| .+.+..+..|.++++|+ .|+++
T Consensus 111 ~l~~n~l~------------------------~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 111 GIFNTGLK------------------------M-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEECCC------------------------S-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred eCCCCCCc------------------------c-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 44444443 2 222 33334443 5555555 44443344455555555 55555
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCcc-ccccchhhhcCC-CCeeEEeCCCCccc
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNK-IEGQLESIIHDS-PYLVTLDLSYNRFH 450 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~Ls~n~l~ 450 (773)
+|.++...+..+..++|+.|++++|+ +++..+..|.++ ++|++|++++|+++
T Consensus 165 ~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp SCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 55554322223323344444444442 444444444444 44444444444444
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-20 Score=190.41 Aligned_cols=191 Identities=23% Similarity=0.311 Sum_probs=99.2
Q ss_pred CCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEE
Q 040297 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 274 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 274 (773)
+++|++|++++|.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++. + .+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 44555555555554332 1 3444555555555555554 2333 22345555555555555432 2 35555555555
Q ss_pred EeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcC
Q 040297 275 DISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354 (773)
Q Consensus 275 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 354 (773)
++++|.++ .++. +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+
T Consensus 113 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 55555555 3332 2335555555555555554332 4455556666666665553222 55556666666666666
Q ss_pred CCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 355 SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 355 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 54332 5555666666666666654332 555666666666666554
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.6e-20 Score=192.96 Aligned_cols=241 Identities=20% Similarity=0.164 Sum_probs=157.5
Q ss_pred CEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE-EEc
Q 040297 223 AILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI-LAL 301 (773)
Q Consensus 223 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~-L~L 301 (773)
++++.++++++ .+|..+. +++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|...+.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777777 7776542 477888888888876555677778888888888887765666665555555443 344
Q ss_pred ccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEccc-CcCCC
Q 040297 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN-NNLEG 380 (773)
Q Consensus 302 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~ 380 (773)
+.|+++.+.+..|..+++|++|++++|+++...+ ..+....++..+++.+ +.+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------------------------VHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC------------------------CTTCCBSSCEEEEEESCTTCCE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCc------------------------hhhcccchhhhhhhcccccccc
Confidence 4555555555555555555555555555553333 3333334444555543 33433
Q ss_pred CccccccCC-CCCcEEEccCCCCCCCCCCCCCCCceeEEECCC-ccccccchhhhcCCCCeeEEeCCCCccccccchhhh
Q 040297 381 PIPIEFCQL-DYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSK-NKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN 458 (773)
Q Consensus 381 ~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 458 (773)
..+..|..+ ..++.|++++|.++...+..+....++++++.+ |.++.+.+.+|.++++|++||+++|+++...+..
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-- 221 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-- 221 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--
Confidence 333344444 356777888888776666667777788888864 6677777778889999999999999998543333
Q ss_pred cCCCCcEEEccCccccccCcccccCCCCCCEEEccCC
Q 040297 459 ILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495 (773)
Q Consensus 459 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 495 (773)
+.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 5567777766655444666 4788999999998754
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-20 Score=182.61 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=91.0
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|+.|+|++|++++..|..|..+++|++|+|++|.|++..+..|.++++|+.|+|++|++++..|..|..+++|+.|++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 36666667777776666777777888888888888888666666778888888888888888777888888888888888
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
++|++++..+..+..+++++.+++.+|||.|+|.+.
T Consensus 136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 888888877777777888888888888888988654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=208.18 Aligned_cols=115 Identities=21% Similarity=0.379 Sum_probs=61.4
Q ss_pred CCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCC
Q 040297 367 ALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSY 446 (773)
Q Consensus 367 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~ 446 (773)
+++.|++++|.+.+ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.++++ |. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCC
Confidence 67777777777765 44433 256677777777665 333 2245555666665555552 22 322 555555555
Q ss_pred CccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCC
Q 040297 447 NRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG 499 (773)
Q Consensus 447 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 499 (773)
|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 55554 333 34555555555555553 332 34455555555555543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-20 Score=198.16 Aligned_cols=181 Identities=20% Similarity=0.198 Sum_probs=124.8
Q ss_pred eEEeCCCCccccccchhhhcCCCCcEEEccCccccccCccccc-CCCCCCEEEccCCcCCCcCcchhhccCcCccccCCC
Q 040297 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLC-ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEG 518 (773)
Q Consensus 440 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~ 518 (773)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..+. .+++|+.|+|++|++++..+..+..
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 86 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP----------- 86 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence 35666666665 3444332 3466777777777766555565 6777777777777776544443332
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeC
Q 040297 519 PPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598 (773)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 598 (773)
+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 87 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 87 -----------------------------------------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 346777777777777666667778888888888
Q ss_pred CCCcCCCCCccccccCccCCeeeCccccCcccCCccc---ccCCCCCEEEccCCcccccCCCCCccccc--CCcCcccCC
Q 040297 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQL---TVLNTLAVFKVAYNNLSGKIPDRVAQFST--FEEDSYEGN 673 (773)
Q Consensus 599 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l---~~l~~L~~L~ls~N~l~~~~p~~~~~~~~--l~~~~l~~N 673 (773)
++|.|++..|..|.++++|+.|+|++|++++..+..+ ..+++|+.|++++|++++..+..+..++. ++.+++.+|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 8888887777788888888888888888886555555 56788888888888888655554555554 367889999
Q ss_pred CCCCCCCC
Q 040297 674 PFLCGWPL 681 (773)
Q Consensus 674 p~lC~~~l 681 (773)
||.|+|.+
T Consensus 200 ~~~C~C~l 207 (361)
T 2xot_A 200 PLECDCKL 207 (361)
T ss_dssp CEECCHHH
T ss_pred CccCCcCc
Confidence 99999854
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=178.82 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=77.0
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|+.|+|++|++++..+..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..|..+++|+.|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 35566666666666555556666666667777777666666666666667777777777766666666666667777777
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
++|++++..|..+..+++++.+++++|||.|+|++
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 77777666666666666667777777777777654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=190.00 Aligned_cols=201 Identities=18% Similarity=0.154 Sum_probs=131.0
Q ss_pred CEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcE-EEc
Q 040297 174 KNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMD-LNL 252 (773)
Q Consensus 174 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~-L~L 252 (773)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|...+..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46677777776 677654 3578888998888877666678888888888888888876777777766777665 556
Q ss_pred cCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEccc-CcCCCcCcccccCCC-CCcEEEcccccC
Q 040297 253 SRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSN-NNLQGHIFSKKFNLT-NLMRLQLDGNNF 330 (773)
Q Consensus 253 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l 330 (773)
+.|+++...|.+|..+++|++|++++|+++ .+|...+....++..|++.+ +.+....+..|..+. .++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 678888777888888888888888888887 55554443345566666644 455554444444443 456666666666
Q ss_pred CccccccccCCCCCCeeeCcC-CcCCCCcchhhcCCCCCcEEEcccCcCCC
Q 040297 331 TGEISDSLSNCRLLAGLYLSD-NHLSGRIPRWLGNLSALEDIRMSNNNLEG 380 (773)
Q Consensus 331 ~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 380 (773)
+.+ +.......+|+.+++++ |.++...+.+|..+++|++|++++|+++.
T Consensus 167 ~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 167 QEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp CEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred cCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 633 32222334566666653 44443333445555666666666666553
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=173.54 Aligned_cols=160 Identities=21% Similarity=0.225 Sum_probs=98.9
Q ss_pred CeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCC
Q 040297 438 YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE 517 (773)
Q Consensus 438 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~ 517 (773)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------- 98 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK---------- 98 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC----------
Confidence 4555555555555444444555566666666666665444444556666666666666665333322221
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEe
Q 040297 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 597 (773)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (773)
+++|++|++++|++++..+..+..+++|++|+
T Consensus 99 ------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 99 ------------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 23666667777766655555567777777777
Q ss_pred CCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCccc
Q 040297 598 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQF 662 (773)
Q Consensus 598 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 662 (773)
|++|.+++..+..|..+++|+.|++++|++.+. +++|+.|+++.|+++|.+|..++.+
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccc
Confidence 777777766666677777777777777776643 3467777777777777777655433
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-19 Score=173.89 Aligned_cols=112 Identities=22% Similarity=0.316 Sum_probs=57.6
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
+|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+++
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 3444444444444333333445555555555555555444444555555555555555555 445555555555555555
Q ss_pred CCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
+|++++..+..+..+++++.+++.+||+.|+|+
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 555555444444555555555555566666553
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-19 Score=171.05 Aligned_cols=151 Identities=21% Similarity=0.185 Sum_probs=74.5
Q ss_pred EEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCC
Q 040297 322 RLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNA 401 (773)
Q Consensus 322 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 401 (773)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4455555544 233322 2345555555555554444444555555555555555544333334444444444444444
Q ss_pred CCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccc
Q 040297 402 IFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQL 481 (773)
Q Consensus 402 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 481 (773)
++ +..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus 88 l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 88 LQ-----------------------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CC-----------------------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 43 3333334445555555555555554444445555555555555555554444445
Q ss_pred cCCCCCCEEEccCCcCC
Q 040297 482 CELKEVRLIDLSHNNLS 498 (773)
Q Consensus 482 ~~l~~L~~L~L~~N~l~ 498 (773)
..+++|+.|++++|.+.
T Consensus 145 ~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTCTTCCEEECCSCCBC
T ss_pred ccCCCccEEEecCCCee
Confidence 55555555555555544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-19 Score=194.89 Aligned_cols=134 Identities=23% Similarity=0.328 Sum_probs=88.0
Q ss_pred CCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCC
Q 040297 343 LLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSK 422 (773)
Q Consensus 343 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 422 (773)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|. +. .+|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence 67777777777765 45434 256777777777776 444 345677777777777766 444 22 2777777777
Q ss_pred ccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCC
Q 040297 423 NKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 423 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
|.++++.+ .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|. +. ++|+.|++++|+|+
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 77776433 46677777777777774 444 45677777777777775 454 44 66777777777665
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=168.80 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=120.3
Q ss_pred eEEeCCCCccccccchhhhcCCCCcEEEccCccccccCc-ccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCC
Q 040297 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP-VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEG 518 (773)
Q Consensus 440 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~ 518 (773)
+.+++++|.++ .+|..+ .+.+++|++++|++++..+ ..+..+++|+.|++++|++++..+..+..
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 36677777766 345433 2356777777777776544 34677788888888888877655544432
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeC
Q 040297 519 PPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598 (773)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 598 (773)
+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 80 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 80 -----------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 347888888888888777777888999999999
Q ss_pred CCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCC
Q 040297 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 599 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
++|.|++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999998888889999999999999999998888899999999999999999886554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=167.62 Aligned_cols=153 Identities=23% Similarity=0.263 Sum_probs=111.9
Q ss_pred eEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCC
Q 040297 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGP 519 (773)
Q Consensus 440 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~ 519 (773)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|+.|+|++|++++..|..+..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 35666666666 3444332 56777777777777666666777777777777777777655555443
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCC
Q 040297 520 PTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLS 599 (773)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 599 (773)
+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 79 ----------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 79 ----------------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp ----------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ----------------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 3477777788887775555557788888888888
Q ss_pred CCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc
Q 040297 600 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 600 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 653 (773)
+|.|++..|..|.++++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 888888778888888888888888888888777778888888888888888764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=171.18 Aligned_cols=151 Identities=27% Similarity=0.403 Sum_probs=91.1
Q ss_pred hcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCc
Q 040297 433 IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGE 512 (773)
Q Consensus 433 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 512 (773)
+..+++|++|++++|++++..+ +..+++|+.|++++|++++ + +.+..+++|+.|++++|++++. + .+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~-~-~l~------ 131 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI-N-GLV------ 131 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC-G-GGG------
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC-h-hhc------
Confidence 3445555555555555554332 5555666666666666553 2 2356666666666666666532 1 111
Q ss_pred cccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCC
Q 040297 513 DYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTR 592 (773)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 592 (773)
.+++|+.|++++|++++. ..++.+++
T Consensus 132 ----------------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~ 157 (291)
T 1h6t_A 132 ----------------------------------------------------HLPQLESLYLGNNKITDI--TVLSRLTK 157 (291)
T ss_dssp ----------------------------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred ----------------------------------------------------CCCCCCEEEccCCcCCcc--hhhccCCC
Confidence 134666677777766643 45667777
Q ss_pred CCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc
Q 040297 593 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 593 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 653 (773)
|++|+|++|.+++..| +..+++|+.|++++|++++. | .+..+++|+.|++++|+++.
T Consensus 158 L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 7777777777775444 67777777777777777653 3 36777777777777777665
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=163.87 Aligned_cols=155 Identities=23% Similarity=0.238 Sum_probs=114.0
Q ss_pred eEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCC
Q 040297 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGP 519 (773)
Q Consensus 440 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~ 519 (773)
+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~------------ 86 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS------------ 86 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc------------
Confidence 45666666665 4444332 67777777777777766777777777777777777775433332222
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCC
Q 040297 520 PTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLS 599 (773)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 599 (773)
+++|+.|+|++|++++..+..|..+++|++|+|+
T Consensus 87 ----------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 87 ----------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp ----------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ----------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 3477788888888886666667888888888888
Q ss_pred CCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCC
Q 040297 600 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIP 656 (773)
Q Consensus 600 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 656 (773)
+|+|+ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 121 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 121 CNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 88888 678888888888888888888887777778888888888888888876544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=168.48 Aligned_cols=169 Identities=25% Similarity=0.293 Sum_probs=81.9
Q ss_pred cCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcE
Q 040297 194 NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 273 (773)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 273 (773)
.+++|++|++++|.+.+. ..+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + ..+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 456677777777766543 235556666666666666652 333 2335566666666666553 2 23555566666
Q ss_pred EEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCc
Q 040297 274 LDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH 353 (773)
Q Consensus 274 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 353 (773)
|++++|.++ .++. +..+++|+.|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.
T Consensus 117 L~L~~n~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCcCC-CChh--hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 666666555 3321 22344555555555544443 233444444444444444443222 3444444444444444
Q ss_pred CCCCcchhhcCCCCCcEEEcccCcC
Q 040297 354 LSGRIPRWLGNLSALEDIRMSNNNL 378 (773)
Q Consensus 354 l~~~~~~~~~~l~~L~~L~L~~n~l 378 (773)
+++. + .+..+++|+.|++++|.+
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred CCCC-h-hhccCCCCCEEECcCCcc
Confidence 4321 1 133344444444444433
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=177.69 Aligned_cols=176 Identities=24% Similarity=0.183 Sum_probs=106.2
Q ss_pred CEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhh-CCCCCcEEEeecccCCCccchhHhhcCCCccEEEc
Q 040297 223 AILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA-DMKMLERLDISYNQLTGEIPERMATGCFLLEILAL 301 (773)
Q Consensus 223 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 301 (773)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..|. ++++|++|+|++|+++ .++...+..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 45566666655 4554432 3466666666666655555555 6666666666666666 454444445666666666
Q ss_pred ccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhh---cCCCCCcEEEcccCcC
Q 040297 302 SNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWL---GNLSALEDIRMSNNNL 378 (773)
Q Consensus 302 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l 378 (773)
++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..| ..+++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 6666666555556666667777777776666666666666777777777777665444444 4466677777777776
Q ss_pred CCCccccccCCCCC--cEEEccCCCCC
Q 040297 379 EGPIPIEFCQLDYL--TILDLSNNAIF 403 (773)
Q Consensus 379 ~~~~~~~~~~l~~L--~~L~L~~n~l~ 403 (773)
.+..+..+..++.+ +.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 65554555555542 55666666543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-17 Score=183.60 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=59.7
Q ss_pred cEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCc
Q 040297 369 EDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNR 448 (773)
Q Consensus 369 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 448 (773)
..+.+..+.+.+..+ +..++.|+.|++++|.+... +....+++|+.|++++|.+.+..+ +..+++|+.|+|++|.
T Consensus 24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 334444454443222 34566777777777776532 333334555555555555554443 4455555555555555
Q ss_pred cccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCC
Q 040297 449 FHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 449 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
+.+ ++ .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.++
T Consensus 99 l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 99 IKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 543 12 344445555555555554431 23444444444444444444
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=158.94 Aligned_cols=115 Identities=23% Similarity=0.352 Sum_probs=107.9
Q ss_pred cccEEecccCcCcccCCh-hhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 568 SMSGIDLSCNKLTGEIPT-QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
+++.|++++|++++..+. .|+.+++|++|+|++|.|++..|..|+++++|+.|+|++|++++..|..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788999999999976664 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
++|++++.+|..+..+++++.+++++|||.|+|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 999999999999999999999999999999999753
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=159.43 Aligned_cols=115 Identities=23% Similarity=0.375 Sum_probs=108.8
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
+++++|++++|+++ .+|..|..+++|++|+|++|.|++..+..|.++++|+.|+|++|++++..|..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 47899999999999 78899999999999999999999888899999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
++|++++..+..+..++.++.+++++|||.|+|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 999999888888889999999999999999999754
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-17 Score=182.92 Aligned_cols=172 Identities=25% Similarity=0.302 Sum_probs=106.4
Q ss_pred hcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCc
Q 040297 193 ENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 272 (773)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 272 (773)
..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+ ++. +..+++|+.|+|++|.+.+ +| .+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 3456666666666666443 2 35566666666666666663 333 2336667777777766663 22 566667777
Q ss_pred EEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCC
Q 040297 273 RLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN 352 (773)
Q Consensus 273 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 352 (773)
+|+|++|.+. .++. +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 113 ~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 7777777766 3432 23466677777777766654 455666777777777777765544 666677777777777
Q ss_pred cCCCCcchhhcCCCCCcEEEcccCcCCC
Q 040297 353 HLSGRIPRWLGNLSALEDIRMSNNNLEG 380 (773)
Q Consensus 353 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 380 (773)
.+++. ..+..+++|+.|+|++|.+.+
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 76643 246666777777777776654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-17 Score=157.83 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=114.0
Q ss_pred cCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCcc
Q 040297 434 HDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED 513 (773)
Q Consensus 434 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~ 513 (773)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 34567788888888887 445 5777888888888888665 2346778888888888888887655544332
Q ss_pred ccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCC
Q 040297 514 YHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI 593 (773)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 593 (773)
+++|+.|++++|++++..|..++.+++|
T Consensus 111 ----------------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 111 ----------------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred ----------------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 3478888888888887778888888888
Q ss_pred CeEeCCCCc-CCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccc
Q 040297 594 HALNLSHNN-LTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSG 653 (773)
Q Consensus 594 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 653 (773)
++|++++|. ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus 139 ~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 139 NSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 888888887 55 555 578888888888888888753 3 67888888888888888753
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=165.85 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=133.9
Q ss_pred CceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEc
Q 040297 413 AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDL 492 (773)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 492 (773)
..+..++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555666667666554 45677888899999998884 45 67888999999999999886544 888999999999
Q ss_pred cCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEE
Q 040297 493 SHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGI 572 (773)
Q Consensus 493 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 572 (773)
++|++++. |... .++|+.|
T Consensus 93 ~~N~l~~l-~~~~------------------------------------------------------------~~~L~~L 111 (263)
T 1xeu_A 93 NRNRLKNL-NGIP------------------------------------------------------------SACLSRL 111 (263)
T ss_dssp CSSCCSCC-TTCC------------------------------------------------------------CSSCCEE
T ss_pred CCCccCCc-Cccc------------------------------------------------------------cCcccEE
Confidence 99988752 2100 0378899
Q ss_pred ecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccc
Q 040297 573 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652 (773)
Q Consensus 573 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 652 (773)
++++|++++ ++ .++.+++|++|+|++|++++. | .++.+++|+.|++++|++++. ..+..+++|+.|++++|+++
T Consensus 112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 999999985 33 588899999999999999864 4 688999999999999999876 67888999999999999988
Q ss_pred ccC
Q 040297 653 GKI 655 (773)
Q Consensus 653 ~~~ 655 (773)
+..
T Consensus 186 ~~~ 188 (263)
T 1xeu_A 186 NEP 188 (263)
T ss_dssp CCC
T ss_pred CCc
Confidence 763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-19 Score=202.95 Aligned_cols=122 Identities=23% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCC
Q 040297 462 QLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSG 541 (773)
Q Consensus 462 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (773)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------- 484 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA---------------------------------- 484 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------------------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------------------------
Confidence 46777777777764 454 667777777777777766 45554433
Q ss_pred CCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCC-ccccccCccCCee
Q 040297 542 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI-PTTFSNLKQIESL 620 (773)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L 620 (773)
+++|+.|+|++|+|++ +| .++.+++|++|+|++|.|++.+ |..|+.+++|+.|
T Consensus 485 ------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 485 ------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp ------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 2366666777776664 55 6777777777777777777665 7777777777777
Q ss_pred eCccccCcccCCc---ccccCCCCCEEEc
Q 040297 621 DLSYNLLHGKIPS---QLTVLNTLAVFKV 646 (773)
Q Consensus 621 dLs~N~l~~~~p~---~l~~l~~L~~L~l 646 (773)
+|++|++++.+|. .+..+++|+.||+
T Consensus 539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7777777766542 2334667777653
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=150.81 Aligned_cols=112 Identities=26% Similarity=0.393 Sum_probs=76.0
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|++|+|++|++++..|..|+.+++|++|+|++|+|++..|..|+++++|+.|||++|++++.+|..+..+++|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 46667777777777666777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCcccccCCCCCcccc-cCCcCcccCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFS-TFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~-~l~~~~l~~Np~lC~~~ 680 (773)
++|++.+..+- ..+. .++...+.++...|+.|
T Consensus 134 ~~N~l~c~c~l--~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 134 ASNPFNCNCHL--AWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TTCCBCCSGGG--HHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCCCccCcCcc--hHHHHHHHHcCCCCCCCCCCCC
Confidence 77777765542 1121 12223445555566544
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-17 Score=173.62 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=62.5
Q ss_pred CCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCee-EEeCCCCccccccchhhhcCCCCcEE
Q 040297 389 LDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLV-TLDLSYNRFHGSIPNWINILPQLSSL 466 (773)
Q Consensus 389 l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L 466 (773)
+++|+.+++++|.++...+..|. +.+|+.+++.+| +..+.+.+|.+|++|+ .+++.+ .++...+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 45555555555555544444443 455555555555 5555566666777776 777766 5554555667777777777
Q ss_pred EccCccccccCcccccCCCCCCEEE
Q 040297 467 LLGNNYIEGEIPVQLCELKEVRLID 491 (773)
Q Consensus 467 ~L~~n~l~~~~~~~~~~l~~L~~L~ 491 (773)
++.+|.++...+.+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7777777666666677777777664
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=151.40 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEE
Q 040297 245 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQ 324 (773)
Q Consensus 245 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 324 (773)
++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34555555555544 223 3445555555555555443 222 1 22345555555555555544444555556666666
Q ss_pred cccccCCccccccccCCCCCCeeeCcCCc-CCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCC
Q 040297 325 LDGNNFTGEISDSLSNCRLLAGLYLSDNH-LSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIF 403 (773)
Q Consensus 325 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 403 (773)
+++|++++..+..++.+++|+.|++++|. +. .+| .+..+++|+.|++++|.+.+. + .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 66666655555555666666666666665 43 333 455566666666666666532 2 4555666666666666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-18 Score=191.16 Aligned_cols=183 Identities=21% Similarity=0.241 Sum_probs=140.8
Q ss_pred CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCc-------------cccccchhhhcCCCCcEEE-ccCccccccC
Q 040297 412 PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNR-------------FHGSIPNWINILPQLSSLL-LGNNYIEGEI 477 (773)
Q Consensus 412 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~ 477 (773)
.+.|+.|++++|.++ .+|..+..+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+....
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 566777777777775 456777777788888876664 4556677777777888777 5555432110
Q ss_pred c-----cccc--CCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceE
Q 040297 478 P-----VQLC--ELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETV 550 (773)
Q Consensus 478 ~-----~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (773)
. ..+. ....|+.|++++|.+++ +|. +..
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~------------------------------------------- 461 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQ------------------------------------------- 461 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGG-------------------------------------------
T ss_pred hhhhhcccccccCccCceEEEecCCCCCC-CcC-ccc-------------------------------------------
Confidence 0 0000 01258899999999986 454 433
Q ss_pred EEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCccc
Q 040297 551 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 630 (773)
Q Consensus 551 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 630 (773)
+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|.|++ +| .|+++++|+.|+|++|++++.
T Consensus 462 ---------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 462 ---------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp ---------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred ---------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence 458999999999999 889999999999999999999996 67 899999999999999999988
Q ss_pred C-CcccccCCCCCEEEccCCcccccCCCC
Q 040297 631 I-PSQLTVLNTLAVFKVAYNNLSGKIPDR 658 (773)
Q Consensus 631 ~-p~~l~~l~~L~~L~ls~N~l~~~~p~~ 658 (773)
+ |..+..+++|+.|++++|++++.+|..
T Consensus 524 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp STTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 7 999999999999999999999887753
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=166.76 Aligned_cols=125 Identities=15% Similarity=0.168 Sum_probs=66.5
Q ss_pred CCCCCEEEccCCcCccCCccCccC-CCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhC------
Q 040297 195 NTNLETLLLANNSLFGSFRMPIHS-YQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD------ 267 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------ 267 (773)
+.++++|.++++ +.......+.. +++|++|||++|++.. .... ...++.+..+.+..+. ..+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~-~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGK-AGTYPNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEES-SSSSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEE-ecCc-cccccccccccccccc---cCHHHhcccccccc
Confidence 456777777654 21111112222 5667777777776651 1100 0012223344444442 22344555
Q ss_pred --CCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEccc
Q 040297 268 --MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDG 327 (773)
Q Consensus 268 --l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 327 (773)
|++|++|++.+ .++ .++...|.+|++|+.+++++|.+..+.+..|.++.++..+....
T Consensus 98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 77777777766 565 66666666667777777777666666666666665555555444
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-17 Score=188.73 Aligned_cols=187 Identities=22% Similarity=0.222 Sum_probs=90.2
Q ss_pred CCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCC
Q 040297 366 SALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLS 445 (773)
Q Consensus 366 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls 445 (773)
+.++.|++.+|.+.. .+. ..++.++|+.|.+. .+++..|.+. ..+..+..++.|+.|+|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i~-------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSID-------------EDDDIENRMV-MPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCccccc-------------Ccccccccee-cChhhhccCCCCcEEECC
Confidence 456777777777664 222 23344555555443 2233333333 345556666777777777
Q ss_pred CCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCcccc
Q 040297 446 YNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWC 525 (773)
Q Consensus 446 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 525 (773)
+|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.|+ .+|..+..
T Consensus 233 ~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------ 291 (727)
T 4b8c_D 233 NLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS------------------ 291 (727)
T ss_dssp TSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG------------------
T ss_pred CCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC------------------
Confidence 77766 45555556677777777777776 56666777777777777777776 55555443
Q ss_pred ccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCC
Q 040297 526 DRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG 605 (773)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 605 (773)
+++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|++
T Consensus 292 ----------------------------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 ----------------------------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ----------------------------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred ----------------------------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 236677777777776 566667777777777777777777
Q ss_pred CCccccccCcc-CCeeeCccccCcccCCcc
Q 040297 606 TIPTTFSNLKQ-IESLDLSYNLLHGKIPSQ 634 (773)
Q Consensus 606 ~~p~~~~~l~~-L~~LdLs~N~l~~~~p~~ 634 (773)
.+|..+..+.. +..++|++|.+++.+|..
T Consensus 331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 331 QFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 66666654422 223667777777666654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-16 Score=159.84 Aligned_cols=167 Identities=22% Similarity=0.271 Sum_probs=96.8
Q ss_pred ccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEccc
Q 040297 296 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375 (773)
Q Consensus 296 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 375 (773)
+..++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L-- 92 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV-- 92 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC--
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC--
Confidence 444455555554332 23445555555555555542 22 34445555555555555543322 444444555554
Q ss_pred CcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccch
Q 040297 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPN 455 (773)
Q Consensus 376 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 455 (773)
++|.+++..+ ... ++|+.|++++|.+++. ..+..+++|++|++++|++++. +
T Consensus 93 ----------------------~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~- 144 (263)
T 1xeu_A 93 ----------------------NRNRLKNLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V- 144 (263)
T ss_dssp ----------------------CSSCCSCCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-
T ss_pred ----------------------CCCccCCcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-
Confidence 4444443221 111 5566666666666554 2366777788888888887754 3
Q ss_pred hhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCc
Q 040297 456 WINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGY 500 (773)
Q Consensus 456 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 500 (773)
.+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 577778888888888888765 5677788888888888887654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-17 Score=186.19 Aligned_cols=224 Identities=21% Similarity=0.211 Sum_probs=109.4
Q ss_pred CCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 318 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
+.++.|++.+|.+.. .+. ..++.++|+.|.+.+ +++..|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 456667776666653 222 223444444444332 223334443 44556667777777777
Q ss_pred cCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccC
Q 040297 398 SNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI 477 (773)
Q Consensus 398 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 477 (773)
++|.+....+..+.++.|+.|+|++|.++ .+|..+.++++|++|+|++|+++ .+|..++.+++|++|+|++|.++ .+
T Consensus 232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 77777644445555677777777777777 55667788899999999999998 67888899999999999999987 67
Q ss_pred cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCc
Q 040297 478 PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557 (773)
Q Consensus 478 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (773)
|..|..+++|+.|+|++|++++.+|..+....
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~------------------------------------------------ 340 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS------------------------------------------------ 340 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH------------------------------------------------
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcc------------------------------------------------
Confidence 87899999999999999999988887765432
Q ss_pred cccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCC--------cCCCCCccccccCccCCeeeCccccCc
Q 040297 558 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHN--------NLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 558 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
.....++|++|.+++.+|.. |+.|++++| .+.+..+..+.++..++...+++|-+.
T Consensus 341 ---------~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 341 ---------VTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------HHHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred ---------hhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 02224678888888877764 445566666 344444444555666666666666654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=143.38 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=105.7
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++++.|++++|++++..+..++.+++|++|++++|.+++..+..|+.+++|+.|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 48899999999999777777899999999999999999877788999999999999999999888888999999999999
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
++|++++..+..+..++.++.+++++||+.|+|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999998888777889999999999999999886
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=155.69 Aligned_cols=266 Identities=9% Similarity=0.074 Sum_probs=150.1
Q ss_pred CCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEE
Q 040297 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 274 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 274 (773)
+..++.+.+.++ ++.+....|.++ +|+.+++..+ ++ .++...|..+ +|+.+.+.+ .++...+.+|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 355566665443 444444455543 5666666554 44 4555555443 566666654 4554555666667777777
Q ss_pred EeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcC
Q 040297 275 DISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354 (773)
Q Consensus 275 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 354 (773)
++++|.++ .++...|. +.+|+.+.+..+ +..+....|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 77666666 66666655 456666666533 44444555555666666666543 33333444444 445555552 233
Q ss_pred CCCcchhhcCCCCCcEEEcccCcCC-----CCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccc
Q 040297 355 SGRIPRWLGNLSALEDIRMSNNNLE-----GPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQL 429 (773)
Q Consensus 355 ~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 429 (773)
+.....+|.++++|+.+++.+|.+. ...+.+|.+| ++|+.+.+. +.+..+.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c-----------------------~~L~~l~l~-~~i~~I~ 315 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC-----------------------PKLARFEIP-ESIRILG 315 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC-----------------------TTCCEECCC-TTCCEEC
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC-----------------------ccCCeEEeC-CceEEEh
Confidence 3333445555555555555544432 1223334444 445555554 2344555
Q ss_pred hhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCC-CCCEEEccCCcCC
Q 040297 430 ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELK-EVRLIDLSHNNLS 498 (773)
Q Consensus 430 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 498 (773)
..+|.+|++|+.+++..+ ++......|.++ +|+.+++.+|.+....+..|.+++ .++.|.+..+.+.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 566777777777777554 554555677777 788888888777665666677764 6777777766543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=140.65 Aligned_cols=87 Identities=22% Similarity=0.219 Sum_probs=54.9
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCC-ccccccCccCCeeeCccccCcccCC---cccccCCCCC
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIP---SQLTVLNTLA 642 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~ 642 (773)
++|+.|++++|++++.+|..+..+++|++|+|++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 35566666666666555666666666777777777666432 1566666777777777777665544 4666667777
Q ss_pred EEEccCCcccc
Q 040297 643 VFKVAYNNLSG 653 (773)
Q Consensus 643 ~L~ls~N~l~~ 653 (773)
+|++++|.+..
T Consensus 151 ~L~l~~n~~~~ 161 (168)
T 2ell_A 151 YLDGYDREDQE 161 (168)
T ss_dssp EETTEETTSCB
T ss_pred EecCCCCChhh
Confidence 77777766653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=141.35 Aligned_cols=138 Identities=22% Similarity=0.195 Sum_probs=114.0
Q ss_pred CCCCeeEEeCCCCccc-cccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCcc
Q 040297 435 DSPYLVTLDLSYNRFH-GSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED 513 (773)
Q Consensus 435 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~ 513 (773)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------ 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence 3478999999999998 67788888899999999999999865 67889999999999999998766665543
Q ss_pred ccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccC-ChhhhccCC
Q 040297 514 YHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI-PTQIGYLTR 592 (773)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~ 592 (773)
+++|+.|++++|++++.. +..+..+++
T Consensus 94 ----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 94 ----------------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLEC 121 (168)
T ss_dssp ----------------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred ----------------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCC
Confidence 348899999999998542 277889999
Q ss_pred CCeEeCCCCcCCCCCc---cccccCccCCeeeCccccCcccCCc
Q 040297 593 IHALNLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHGKIPS 633 (773)
Q Consensus 593 L~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~N~l~~~~p~ 633 (773)
|++|++++|.+++..+ ..|..+++|+.||+++|.+. .+|+
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999999999996655 57889999999999999887 3443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=138.15 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=57.5
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCC-CccccccCccCCeeeCccccCcccCC---cccccCCCCC
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGT-IPTTFSNLKQIESLDLSYNLLHGKIP---SQLTVLNTLA 642 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~ 642 (773)
++|+.|++++|++++.+|..++.+++|++|++++|.+++. .|..++.+++|+.|++++|++++..+ ..+..+++|+
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 4667777777777765666666777777777777777753 33667777777777777777776655 5677777777
Q ss_pred EEEcc
Q 040297 643 VFKVA 647 (773)
Q Consensus 643 ~L~ls 647 (773)
.||++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 77765
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=140.13 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=102.0
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
..+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|+++++|+.|||++|++++..|..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999999 5787664 899999999999999889999999999999999999998888889999999999999
Q ss_pred CCcccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
+|++++..|..+..+.+++.+++++||+.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999888888999999999999999999985
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=153.25 Aligned_cols=257 Identities=9% Similarity=0.068 Sum_probs=184.3
Q ss_pred CCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccE
Q 040297 219 YQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEI 298 (773)
Q Consensus 219 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 298 (773)
+..++.+.+.++ ++ .++...|..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|.+|.+|+.
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 466777777653 44 5666666654 7888888665 665666677774 688888875 565 677777777888888
Q ss_pred EEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcC
Q 040297 299 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378 (773)
Q Consensus 299 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 378 (773)
+++++|.++.+....|. ..+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88888888776666665 578888888744 66566677888888888888764 44444556666 677777774 445
Q ss_pred CCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhh
Q 040297 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWIN 458 (773)
Q Consensus 379 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 458 (773)
......+|.+|++|+.+++.+|.+. .+....+.+.+|.+|++|+.+++.+ .++......|.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFN------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCC------------------CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred cEEChhHhhCCCCCCEEEeCCcccc------------------CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence 5455667777777777777766543 1122245667899999999999994 47766678899
Q ss_pred cCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhcc
Q 040297 459 ILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYT 508 (773)
Q Consensus 459 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 508 (773)
++++|+.+.+..+ ++.....+|.++ +|+.+++++|.+....+..|..+
T Consensus 321 ~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 9999999999665 776777889999 99999999998875544444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=139.07 Aligned_cols=87 Identities=26% Similarity=0.280 Sum_probs=70.3
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|+.|+|++|++++..+..|..+++|++|+|++|.|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 36777777777777666677888888888888888888777778888888888888888888777777888888888888
Q ss_pred cCCcccc
Q 040297 647 AYNNLSG 653 (773)
Q Consensus 647 s~N~l~~ 653 (773)
++|++..
T Consensus 134 ~~N~~~C 140 (193)
T 2wfh_A 134 GANPLYC 140 (193)
T ss_dssp CSSCEEC
T ss_pred CCCCeec
Confidence 8888764
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=136.68 Aligned_cols=129 Identities=21% Similarity=0.220 Sum_probs=107.8
Q ss_pred CCCeeEEeCCCCccc-cccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccc
Q 040297 436 SPYLVTLDLSYNRFH-GSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDY 514 (773)
Q Consensus 436 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~ 514 (773)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence 367888888888887 67777788889999999999998865 67888999999999999998766665543
Q ss_pred cCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCccc-CChhhhccCCC
Q 040297 515 HEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE-IPTQIGYLTRI 593 (773)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L 593 (773)
+++|+.|++++|++++. .|..++.+++|
T Consensus 87 ---------------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 87 ---------------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp ---------------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred ---------------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 34889999999999863 34789999999
Q ss_pred CeEeCCCCcCCCCCc---cccccCccCCeeeCcc
Q 040297 594 HALNLSHNNLTGTIP---TTFSNLKQIESLDLSY 624 (773)
Q Consensus 594 ~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~ 624 (773)
++|++++|.+++..+ ..++.+++|+.||+++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999997766 5789999999999874
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=136.13 Aligned_cols=90 Identities=23% Similarity=0.264 Sum_probs=67.0
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|++|++++|++++..+..++.+++|++|+|++|.+++..+..|+++++|+.|++++|++++..+..+..+++|+.|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 36666777777776555556677788888888888888766667778888888888888887666666777888888888
Q ss_pred cCCcccccCC
Q 040297 647 AYNNLSGKIP 656 (773)
Q Consensus 647 s~N~l~~~~p 656 (773)
++|++.+..|
T Consensus 132 ~~N~~~~~~~ 141 (177)
T 2o6r_A 132 HTNPWDCSCP 141 (177)
T ss_dssp CSSCBCCCHH
T ss_pred cCCCeeccCc
Confidence 8888776655
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=136.66 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=99.8
Q ss_pred cEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCC
Q 040297 570 SGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYN 649 (773)
Q Consensus 570 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 649 (773)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|+++++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67999999997 7887765 89999999999999988999999999999999999999887778899999999999999
Q ss_pred cccccCCCCCcccccCCcCcccCCCCCCCCC
Q 040297 650 NLSGKIPDRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 650 ~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
++++..+..+..+++++.+++.+||+.|.|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9998888778899999999999999999985
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=148.00 Aligned_cols=335 Identities=13% Similarity=0.084 Sum_probs=204.8
Q ss_pred CccccCchhhcCCCCCCEEeCCCCCCCCCccchhhhcCCCCcEEECCCcccccccChhhhcCCCCCcEEeCcchhhccCC
Q 040297 27 FTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSN 106 (773)
Q Consensus 27 l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~~~l~l~~ 106 (773)
++ +|...+|.+|++|+.+++..+ ++.. -..+|.++++|+.+++.++ ++ .|+..+|..+.+|+.+.+. .
T Consensus 59 Vt-sIg~~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p-------~ 126 (394)
T 4fs7_A 59 VV-SIGYAAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLP-------L 126 (394)
T ss_dssp EE-EECTTTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCC-------T
T ss_pred Ee-EhHHHHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhccc-------C
Confidence 44 677778888999999988744 5543 2456888899999988765 33 5666688888888887765 2
Q ss_pred CcccccccCcccccCCCCCcEEecccccccccccCCCCCCccccEEEccCCCCCCCcChhhcCCCCCCEEECCCCCCccc
Q 040297 107 NHFFQIPISLEPLFNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGN 186 (773)
Q Consensus 107 n~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~ 186 (773)
+.. .+....+.++..+...... .+.. ....+|.+|++|+.+.+..+- . .
T Consensus 127 -~l~--~i~~~aF~~~~~~~~~~~~----------------~~~~----------i~~~aF~~c~~L~~i~l~~~~-~-~ 175 (394)
T 4fs7_A 127 -MLK--SIGVEAFKGCDFKEITIPE----------------GVTV----------IGDEAFATCESLEYVSLPDSM-E-T 175 (394)
T ss_dssp -TCC--EECTTTTTTCCCSEEECCT----------------TCCE----------ECTTTTTTCTTCCEEECCTTC-C-E
T ss_pred -cee--eecceeeecccccccccCc----------------cccc----------cchhhhcccCCCcEEecCCcc-c-e
Confidence 111 1111233333322211111 1111 112356677777777776542 2 3
Q ss_pred cchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhh
Q 040297 187 FPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA 266 (773)
Q Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 266 (773)
++...|.++++|+.+.+..+ +.......|..+..|+.+.+..+... +....+. ..+|+.+.+... ++.....+|.
T Consensus 176 I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~ 250 (394)
T 4fs7_A 176 LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDS-FTELGKSVFY 250 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTT-CCEECSSTTT
T ss_pred eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCC-ceeccccccc
Confidence 55555677777877777665 44444556777777777776655432 2222332 457777777543 3334455677
Q ss_pred CCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCe
Q 040297 267 DMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAG 346 (773)
Q Consensus 267 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 346 (773)
++..|+.+.+..+.. .++...+..+..++.+....+.+. ...|..+.+|+.+.+.++ ++.+...+|.++++|+.
T Consensus 251 ~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 251 GCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 777888887766643 455566666777777776665433 345667777888777654 55455667778888888
Q ss_pred eeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEE
Q 040297 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQV 418 (773)
Q Consensus 347 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 418 (773)
+++..+ ++.....+|.++.+|+.+++..+ +......+|.+|.+|+.+++..+- ......+..+++|+.+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-GGGGGGBCTTCEEEEE
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-EEhhheecCCCCCcEE
Confidence 887643 55455567778888888888765 554556678888888888886542 2111122235666543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.2e-14 Score=150.81 Aligned_cols=244 Identities=13% Similarity=0.120 Sum_probs=106.5
Q ss_pred CCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHh
Q 040297 211 SFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMA 290 (773)
Q Consensus 211 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 290 (773)
+...+|.++.+|+.+.+..+ ++ .++...|..+++|+.+++.++ ++.....+|.++++|+.+.+..+ +. .+....|
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF 136 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAF 136 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceee
Confidence 34445666666666666533 44 455555555666666666543 44344455666666665554433 22 3444444
Q ss_pred hcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcE
Q 040297 291 TGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALED 370 (773)
Q Consensus 291 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 370 (773)
.++..++...... .......+|.++++|+.+.+..+. ......+|.++.+|+.
T Consensus 137 ~~~~~~~~~~~~~--------------------------~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~ 189 (394)
T 4fs7_A 137 KGCDFKEITIPEG--------------------------VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKS 189 (394)
T ss_dssp TTCCCSEEECCTT--------------------------CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCB
T ss_pred ecccccccccCcc--------------------------ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceE
Confidence 3332222111111 111222334444444444443322 1122334444444444
Q ss_pred EEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccc
Q 040297 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450 (773)
Q Consensus 371 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 450 (773)
+.+..+ +......+|.++..|+.+.+..+... .....+....|+.+.+... +..+....|.++..++.+.+..+...
T Consensus 190 i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~ 266 (394)
T 4fs7_A 190 IKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR 266 (394)
T ss_dssp CCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE
T ss_pred EEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce
Confidence 444433 22222334444555554444433211 1112222334444444321 22233344555566666665554332
Q ss_pred cccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEcc
Q 040297 451 GSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLS 493 (773)
Q Consensus 451 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 493 (773)
.....|..+..++.+....+.+. ...|..+.+|+.+.+.
T Consensus 267 -i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 267 -IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp -ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred -eeccccccccccceeccCceeec---cccccccccccccccc
Confidence 33344555555555555444322 2234455555555544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-16 Score=148.97 Aligned_cols=150 Identities=22% Similarity=0.308 Sum_probs=91.4
Q ss_pred hcCCCCeeEEeCCCCccccccch------hhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhh
Q 040297 433 IHDSPYLVTLDLSYNRFHGSIPN------WINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLV 506 (773)
Q Consensus 433 ~~~~~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 506 (773)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34445666666666666665554 66677777777777777764 44 6666677777777777665 3343222
Q ss_pred ccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChh
Q 040297 507 YTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ 586 (773)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 586 (773)
. +++|+.|++++|++++ +| .
T Consensus 91 ~----------------------------------------------------------~~~L~~L~L~~N~l~~-l~-~ 110 (198)
T 1ds9_A 91 V----------------------------------------------------------ADTLEELWISYNQIAS-LS-G 110 (198)
T ss_dssp H----------------------------------------------------------HHHCSEEEEEEEECCC-HH-H
T ss_pred c----------------------------------------------------------CCcCCEEECcCCcCCc-CC-c
Confidence 1 2366666666666664 33 4
Q ss_pred hhccCCCCeEeCCCCcCCCCCc-cccccCccCCeeeCccccCcccCCcc----------cccCCCCCEEE
Q 040297 587 IGYLTRIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPSQ----------LTVLNTLAVFK 645 (773)
Q Consensus 587 ~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~----------l~~l~~L~~L~ 645 (773)
++.+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|.. +..+++|+.||
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6666666666666666663322 35666666666666666666555542 55666666654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=129.83 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=50.0
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCcc--ccccCccCCeeeCccccCcccCCc----ccccCCCC
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT--TFSNLKQIESLDLSYNLLHGKIPS----QLTVLNTL 641 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~~p~----~l~~l~~L 641 (773)
+|+.|++++|++++..+..++.+++|++|+|++|.++ .+|. .++.+++|+.|++++|+++ .+|. .+..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 5555555555555433344466666666666666665 3444 5666666667777776666 3344 36666777
Q ss_pred CEEEccCCccc
Q 040297 642 AVFKVAYNNLS 652 (773)
Q Consensus 642 ~~L~ls~N~l~ 652 (773)
+.||+++|...
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 77777766654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.3e-14 Score=131.03 Aligned_cols=134 Identities=18% Similarity=0.159 Sum_probs=96.0
Q ss_pred hcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCc
Q 040297 433 IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGE 512 (773)
Q Consensus 433 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 512 (773)
+..+++|++|++++|+++. ++......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----- 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence 4567788888888888874 454333344888888888888764 56778888888888888887543333332
Q ss_pred cccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCCh--hhhcc
Q 040297 513 DYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT--QIGYL 590 (773)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l 590 (773)
+++|+.|++++|+++ .+|. .++.+
T Consensus 87 -----------------------------------------------------l~~L~~L~L~~N~i~-~~~~~~~l~~l 112 (176)
T 1a9n_A 87 -----------------------------------------------------LPDLTELILTNNSLV-ELGDLDPLASL 112 (176)
T ss_dssp -----------------------------------------------------CTTCCEEECCSCCCC-CGGGGGGGGGC
T ss_pred -----------------------------------------------------CCCCCEEECCCCcCC-cchhhHhhhcC
Confidence 347888888888886 4555 67788
Q ss_pred CCCCeEeCCCCcCCCCCcc----ccccCccCCeeeCccccCcc
Q 040297 591 TRIHALNLSHNNLTGTIPT----TFSNLKQIESLDLSYNLLHG 629 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~LdLs~N~l~~ 629 (773)
++|+.|++++|.++ .+|. .+..+++|+.||+++|....
T Consensus 113 ~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 113 KSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 88888888888887 4555 37788888888888887653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-15 Score=146.17 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=127.2
Q ss_pred hhcCCCCcEEEccCccccccCcc------cccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccc
Q 040297 457 INILPQLSSLLLGNNYIEGEIPV------QLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASV 530 (773)
Q Consensus 457 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (773)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 45677888889999999888776 89999999999999999986 45 4433
Q ss_pred cCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccc
Q 040297 531 YGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTT 610 (773)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 610 (773)
+++|+.|++++|+++ .+|..+..+++|++|+|++|.+++ +| .
T Consensus 69 -----------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~ 110 (198)
T 1ds9_A 69 -----------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-G 110 (198)
T ss_dssp -----------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-H
T ss_pred -----------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-c
Confidence 458999999999999 788888888999999999999996 55 6
Q ss_pred cccCccCCeeeCccccCcccCC-cccccCCCCCEEEccCCcccccCCCC----------CcccccCCcCcccCCC
Q 040297 611 FSNLKQIESLDLSYNLLHGKIP-SQLTVLNTLAVFKVAYNNLSGKIPDR----------VAQFSTFEEDSYEGNP 674 (773)
Q Consensus 611 ~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~----------~~~~~~l~~~~l~~Np 674 (773)
+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..++.++.++ +||
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 8999999999999999986543 57899999999999999999887763 44556666543 554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=124.71 Aligned_cols=90 Identities=24% Similarity=0.238 Sum_probs=84.0
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
+.++.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 47899999999999888999999999999999999999888888999999999999999999888888999999999999
Q ss_pred cCCcccccCC
Q 040297 647 AYNNLSGKIP 656 (773)
Q Consensus 647 s~N~l~~~~p 656 (773)
++|++....+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999987654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-13 Score=142.78 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=98.9
Q ss_pred cEEecccC-cCcccCChhhhccCCCCeEeCCC-CcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 570 SGIDLSCN-KLTGEIPTQIGYLTRIHALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 570 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
..++++++ +++ .+|. +..+++|++|+|++ |.|++..|..|+++++|+.|||++|+|++.+|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35789988 898 5888 99999999999996 99998888999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 648 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 648 ~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
+|+|++..|..+..+. |+.+++.+|++.|+|.+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999988887766655 99999999999999964
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=122.20 Aligned_cols=90 Identities=23% Similarity=0.247 Sum_probs=82.8
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
++|+.|+|++|++++..|..|+.+++|++|+|++|+|++..+..|+++++|+.|||++|++++..+..|..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 48899999999999888999999999999999999999877777899999999999999999887777999999999999
Q ss_pred cCCcccccCC
Q 040297 647 AYNNLSGKIP 656 (773)
Q Consensus 647 s~N~l~~~~p 656 (773)
++|++....+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999986443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-11 Score=128.70 Aligned_cols=316 Identities=10% Similarity=0.075 Sum_probs=184.8
Q ss_pred hhhcCCC-CCCEEECCCCCCccccchhHhhcCCCCCEEEccCCc---CccCCccCccCCCCcCEEEccCCcCccCCchhH
Q 040297 165 KFLYHQH-DLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNS---LFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEI 240 (773)
Q Consensus 165 ~~l~~~~-~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 240 (773)
.+|.++. .|+.+.+... ++ .+....|.+|++|+.+.+..|. ++......|..+.+|+.+.+..+ ++ .++...
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEA 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred hhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhh
Confidence 3566664 5888888643 43 4555556788888888887653 44444566777788887777654 33 456666
Q ss_pred hhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCC
Q 040297 241 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNL 320 (773)
Q Consensus 241 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 320 (773)
+..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++ .+....|. ...|+.+.+..+. .......|.++.++
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCcc-cccccchhhhcccc
Confidence 666778888888643 33355567788888888888655 44 66666665 4567777776543 22334556677777
Q ss_pred cEEEcccccCCcccccc-------------ccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCcccccc
Q 040297 321 MRLQLDGNNFTGEISDS-------------LSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFC 387 (773)
Q Consensus 321 ~~L~L~~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 387 (773)
+......+......... +.....+..+.+.. .+......+|.++..|+.+.+.++... ....+|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccc
Confidence 77766554433111101 11122233333322 222233446677777777777654432 4455677
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEE
Q 040297 388 QLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSL 466 (773)
Q Consensus 388 ~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 466 (773)
++.+|+.+.+.. .+.......|. +.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++......|.++++|+.+
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 777777777753 34444444454 567777777653 55555667777777777777544 444445667777777777
Q ss_pred EccCccccccCcccccCCCCCCEEEccCCcC
Q 040297 467 LLGNNYIEGEIPVQLCELKEVRLIDLSHNNL 497 (773)
Q Consensus 467 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 497 (773)
++.++.... ..+..+.+|+.+.+..+.+
T Consensus 363 ~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 363 EYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EESSCHHHH---HTCBCCCCC----------
T ss_pred EECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 777765431 3456666777776665543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-11 Score=127.69 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=36.5
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEcc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVA 647 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 647 (773)
+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++..-..+|.++++|+.+++.++.... ..+....+|+.+.+.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 4444444332 33233445666666666666543 543445566666777777666664321 234455556655555
Q ss_pred CCc
Q 040297 648 YNN 650 (773)
Q Consensus 648 ~N~ 650 (773)
.|.
T Consensus 387 ~~~ 389 (394)
T 4gt6_A 387 PGS 389 (394)
T ss_dssp ---
T ss_pred CCC
Confidence 443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-13 Score=143.25 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=28.4
Q ss_pred hccCCCCeEeCCCCcCCCC----CccccccCccCCeeeCccccCccc----CCcccccCCCCCEEEccCCccc
Q 040297 588 GYLTRIHALNLSHNNLTGT----IPTTFSNLKQIESLDLSYNLLHGK----IPSQLTVLNTLAVFKVAYNNLS 652 (773)
Q Consensus 588 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 652 (773)
...++|++|+|++|.|++. ++..+...++|+.|||++|.++.. ++..+...++|+.||+++|+++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3344444444444444321 123334444455555555544431 2223333445555555555544
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-13 Score=140.66 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=42.0
Q ss_pred CCCCEEEccCCcCccCCccCcc-----CCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhh-----
Q 040297 196 TNLETLLLANNSLFGSFRMPIH-----SYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF----- 265 (773)
Q Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~----- 265 (773)
+.|++|+|++|.++......+. ..++|++|+|++|.++......+...+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4556666666655432222211 124566666666655432222333334456666666666554333322
Q ss_pred hCCCCCcEEEeecccCC
Q 040297 266 ADMKMLERLDISYNQLT 282 (773)
Q Consensus 266 ~~l~~L~~L~Ls~n~l~ 282 (773)
...++|++|+|++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLT 168 (372)
T ss_dssp STTCCCCEEECCSSCCH
T ss_pred hcCCccceeeCCCCCCC
Confidence 23455666666666554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-11 Score=129.17 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=90.8
Q ss_pred cccccEEeccc-CcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEE
Q 040297 566 LTSMSGIDLSC-NKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVF 644 (773)
Q Consensus 566 l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L 644 (773)
+++|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34899999996 999988888999999999999999999999999999999999999999999988887887776 9999
Q ss_pred EccCCcccccCC-CCCcccccCCcCcccCCCCCCCCC
Q 040297 645 KVAYNNLSGKIP-DRVAQFSTFEEDSYEGNPFLCGWP 680 (773)
Q Consensus 645 ~ls~N~l~~~~p-~~~~~~~~l~~~~l~~Np~lC~~~ 680 (773)
++++|++...-+ ..+..+.......+..+...|..+
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 999999875322 111111222233445566777654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.08 E-value=6e-09 Score=111.20 Aligned_cols=289 Identities=11% Similarity=0.058 Sum_probs=123.4
Q ss_pred hcCCCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCC
Q 040297 167 LYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPG 246 (773)
Q Consensus 167 l~~~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 246 (773)
+....+|+.+.+.. .++ .+++..|.+|.+|+.+++..+ ++.+....|..+ +|+.+.+..+ ++ .++...|... +
T Consensus 42 ~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-C
T ss_pred cccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-C
Confidence 33444455555542 122 344444455556666655433 333334444444 4555544432 22 3444444422 5
Q ss_pred CcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCc------------Ccccc
Q 040297 247 LMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGH------------IFSKK 314 (773)
Q Consensus 247 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~ 314 (773)
|+.+.+..+ +......+|.++ +|+.+.+..+ ++ .+....+..+..++...+..+..... ....+
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 555555443 222223334333 3444444332 22 33334444455555555443322111 11122
Q ss_pred cCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcE
Q 040297 315 FNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTI 394 (773)
Q Consensus 315 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 394 (773)
.....+..+.+.... .......+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 223333333333221 1122334444455555555432 22223334445555555555443 22233344445555555
Q ss_pred EEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCcccc
Q 040297 395 LDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIE 474 (773)
Q Consensus 395 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 474 (773)
+.+..+ +..+...+|.+|++|+.+++.++.++......|.++.+|+.+.+..+ ++
T Consensus 268 i~l~~~------------------------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~ 322 (379)
T 4h09_A 268 LNFYAK------------------------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK 322 (379)
T ss_dssp EEECCC------------------------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred cccccc------------------------ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence 554332 22333344555555555555555444333444555555555555432 33
Q ss_pred ccCcccccCCCCCCEEEccC
Q 040297 475 GEIPVQLCELKEVRLIDLSH 494 (773)
Q Consensus 475 ~~~~~~~~~l~~L~~L~L~~ 494 (773)
.+...+|.++++|+.+.+..
T Consensus 323 ~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 323 TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECTTTTTTCTTCCCCCCCT
T ss_pred EEHHHHhhCCCCCCEEEECC
Confidence 33344555555555555543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-08 Score=105.92 Aligned_cols=70 Identities=9% Similarity=0.110 Sum_probs=43.2
Q ss_pred ccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccC
Q 040297 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 638 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 638 (773)
++|+.+++.++.++......|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++..-...|.+.
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 35666666666665444566777777777777654 55455567777777777777554 443434445443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=106.20 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=80.4
Q ss_pred cccEEEccCCCCCC-C-------cChhhcCCCCCCEEECCCCCCc---------cccchhHhhcCCCCCEEEccCCcCcc
Q 040297 148 QLTSISLSGYIDGG-T-------FPKFLYHQHDLKNADLSHLNLS---------GNFPNWLVENNTNLETLLLANNSLFG 210 (773)
Q Consensus 148 ~L~~L~l~~~~~~~-~-------~~~~l~~~~~L~~L~L~~~~l~---------~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (773)
+++.|.+..+...+ . +..+...+++|+.|.+...... +.+. .++..+|+|+.|.|++|.-.
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-
Confidence 56677766554332 1 1233456678888887654321 1122 33467788888888776311
Q ss_pred CCccCccCCCCcCEEEccCCcCccCCchhHh-hCCCCCcEEEccC--CccCcc-----Cchhh--hCCCCCcEEEeeccc
Q 040297 211 SFRMPIHSYQKLAILDVSKNFFQGHIPVEIG-TYLPGLMDLNLSR--NAFNGS-----IPSSF--ADMKMLERLDISYNQ 280 (773)
Q Consensus 211 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~--n~l~~~-----~p~~~--~~l~~L~~L~Ls~n~ 280 (773)
..+. + .+++|+.|++..+.+.......+. ..+|+|++|+|+. +...+. +...+ ..+++|++|++++|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1121 3 267788888887776533323333 1367888887753 221111 01112 235677777777766
Q ss_pred CCCccchhHhh--cCCCccEEEcccCcCC
Q 040297 281 LTGEIPERMAT--GCFLLEILALSNNNLQ 307 (773)
Q Consensus 281 l~~~~~~~~~~--~l~~L~~L~L~~n~l~ 307 (773)
+.+..+..++. .+++|++|+|+.|.+.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 65433333322 1334444444444443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.7e-09 Score=107.53 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=42.8
Q ss_pred CCceeEEECCCccccccchhhhc---CCCCeeEEeCCCCcccccc----chhhhcCCCCcEEEccCccccccCcccccC-
Q 040297 412 PAFIEQVHLSKNKIEGQLESIIH---DSPYLVTLDLSYNRFHGSI----PNWINILPQLSSLLLGNNYIEGEIPVQLCE- 483 (773)
Q Consensus 412 ~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~- 483 (773)
+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45566666655555433222222 3556777777776666532 223344566777777766665433332322
Q ss_pred CCCCCEEEccCCc
Q 040297 484 LKEVRLIDLSHNN 496 (773)
Q Consensus 484 l~~L~~L~L~~N~ 496 (773)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 2445666554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-07 Score=90.32 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccccEEecccCcCcc--cCChhhhccCCCCeEeCCCCcCCCCCccccccCc--cCCeeeCccccCcccCC
Q 040297 567 TSMSGIDLSCNKLTG--EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLLHGKIP 632 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~LdLs~N~l~~~~p 632 (773)
+.|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|++.+.+|
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 445555555555554 2334444555555555555555432 1222222 45555555555544333
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-07 Score=89.78 Aligned_cols=44 Identities=18% Similarity=0.056 Sum_probs=26.1
Q ss_pred hhhhcCCCCcEEEccCc-ccccc----CcccccCCCCCCEEEccCCcCC
Q 040297 455 NWINILPQLSSLLLGNN-YIEGE----IPVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 455 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 498 (773)
..+...++|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34555667777777777 66532 2334455566666666666664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-07 Score=89.88 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=45.4
Q ss_pred chhhhcCCCCeeEEeCCCC-ccccc----cchhhhcCCCCcEEEccCccccccC----cccccCCCCCCEEEccCCcCCC
Q 040297 429 LESIIHDSPYLVTLDLSYN-RFHGS----IPNWINILPQLSSLLLGNNYIEGEI----PVQLCELKEVRLIDLSHNNLSG 499 (773)
Q Consensus 429 ~~~~~~~~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~ 499 (773)
+...+...+.|++|+|++| .+.+. +...+...++|++|+|++|.+.... ...+...++|++|+|++|.|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4455666777888888887 77643 2334455677888888888776432 2334445667777777776653
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-07 Score=93.94 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=65.0
Q ss_pred EecccCcCc---ccCChhhhccCCCCeEeCCCCcCCC--CCccccccCccCCeeeCccccCcccCCcccccCC--CCCEE
Q 040297 572 IDLSCNKLT---GEIPTQIGYLTRIHALNLSHNNLTG--TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLN--TLAVF 644 (773)
Q Consensus 572 L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~--~L~~L 644 (773)
++++.|+.. +.++....++++|+.|+|++|+|++ .+|..++.+++|+.|||++|++++. +.+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 677777543 2222223568899999999999997 4557788999999999999999976 3344455 89999
Q ss_pred EccCCcccccCCC
Q 040297 645 KVAYNNLSGKIPD 657 (773)
Q Consensus 645 ~ls~N~l~~~~p~ 657 (773)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987763
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.2e-05 Score=70.21 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=40.3
Q ss_pred eeeCccccCc-ccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 619 SLDLSYNLLH-GKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 619 ~LdLs~N~l~-~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
.+|.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+..++.+++.+|||.|+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 4566666654 23443322 2466677777777666666666677777788899999999975
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.74 E-value=7.5e-06 Score=74.93 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=68.2
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCc-CCCCCccccccC----ccCCeeeCcccc-CcccCCcccccCCCC
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNN-LTGTIPTTFSNL----KQIESLDLSYNL-LHGKIPSQLTVLNTL 641 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~LdLs~N~-l~~~~p~~l~~l~~L 641 (773)
.|++||++++.+++.--..+..+++|+.|+|++|. +++.--..++.+ ++|++|||++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 78999999999987767778899999999999995 775444455554 479999999985 776555667889999
Q ss_pred CEEEccCCc
Q 040297 642 AVFKVAYNN 650 (773)
Q Consensus 642 ~~L~ls~N~ 650 (773)
+.|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.66 E-value=2.3e-05 Score=71.68 Aligned_cols=83 Identities=12% Similarity=0.144 Sum_probs=40.8
Q ss_pred CCcEEEcccccCCccccccccCCCCCCeeeCcCCc-CCCCcchhhcCC----CCCcEEEcccCc-CCCCccccccCCCCC
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNH-LSGRIPRWLGNL----SALEDIRMSNNN-LEGPIPIEFCQLDYL 392 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 392 (773)
.|++||++++.++...-..+..+++|+.|+|++|. +++..-..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333344555555555555553 443333333332 245666666553 443333344555666
Q ss_pred cEEEccCCC
Q 040297 393 TILDLSNNA 401 (773)
Q Consensus 393 ~~L~L~~n~ 401 (773)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666665553
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00064 Score=63.36 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=38.2
Q ss_pred hhhcCCCCeeEEeCCCC-ccccc----cchhhhcCCCCcEEEccCccccccC----cccccCCCCCCEEEccCCcCCC
Q 040297 431 SIIHDSPYLVTLDLSYN-RFHGS----IPNWINILPQLSSLLLGNNYIEGEI----PVQLCELKEVRLIDLSHNNLSG 499 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~ 499 (773)
....+-+.|++|+|++| .|.+. +...+..-..|+.|+|++|++.... ...+..-+.|+.|+|++|.|..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 34445566777777764 55532 2334444566666666666665332 2233345566666666666653
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0016 Score=56.72 Aligned_cols=57 Identities=26% Similarity=0.315 Sum_probs=42.4
Q ss_pred cEEecccCcCc-ccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCc
Q 040297 570 SGIDLSCNKLT-GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628 (773)
Q Consensus 570 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 628 (773)
..+|.+++.++ ..+|..+. ++|+.|+|++|+|+...++.|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888886 35665443 46888888888888766777888888888888888775
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=61.64 Aligned_cols=65 Identities=25% Similarity=0.354 Sum_probs=31.6
Q ss_pred cCCCCCCEEECCCC-CCccc----cchhHhhcCCCCCEEEccCCcCccCCcc----CccCCCCcCEEEccCCcCc
Q 040297 168 YHQHDLKNADLSHL-NLSGN----FPNWLVENNTNLETLLLANNSLFGSFRM----PIHSYQKLAILDVSKNFFQ 233 (773)
Q Consensus 168 ~~~~~L~~L~L~~~-~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~ 233 (773)
.+-+.|+.|+|+++ .+... +.+.+ ..-+.|++|+|++|.+.+.... .+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666654 54422 11222 3345666666666666432221 2223345555555555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 773 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-23 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-17 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-08 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 9e-21 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-19 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-16 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-17 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-16 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 8e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-15 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-10 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-09 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-06 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 2e-07 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 2e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-04 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 3e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 9e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 8e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 4e-05 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 6e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 9e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 6e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 1e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 6e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 6e-04 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 99.7 bits (247), Expect = 4e-23
Identities = 71/389 (18%), Positives = 139/389 (35%), Gaps = 24/389 (6%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
+L L TN T TV +L + L D+ + + + + +L ++
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRLGI---KSIDGVEYLNNLTQINF 73
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
++ ++ K ++ + + N ++L +
Sbjct: 74 SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLV 192
E N+++ L+ ++ + G L +L + ++ + ++
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 193 ENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNL 252
TNLE+L+ NN + P+ L L ++ N + + L L DL+L
Sbjct: 194 AKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDL 248
Query: 253 SRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFS 312
+ N + P + + L L + NQ++ P L + L N Q S
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPL-----AGLTALTNLELNENQLEDIS 301
Query: 313 KKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIR 372
NL NL L L NN + +S+ L L+ ++N +S L NL+ + +
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357
Query: 373 MSNNNLEGPIPIEFCQLDYLTILDLSNNA 401
+N + P L +T L L++ A
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 80.8 bits (198), Expect = 7e-17
Identities = 54/398 (13%), Positives = 116/398 (29%), Gaps = 48/398 (12%)
Query: 261 IPSSFAD--MKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLT 318
I F D + + + +T + + + L ++ L
Sbjct: 12 INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ---VTTLQADRLGIKS--IDGVEYLN 66
Query: 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNL 378
NL ++ N T L N L + +++N ++ P + +
Sbjct: 67 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124
Query: 379 EGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDS-- 436
P+ + ++ + + + D
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184
Query: 437 ------------PYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCEL 484
L +L + N+ P I L L L N ++ L L
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASL 240
Query: 485 KEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPM 544
+ +DL++N +S P T L T + + L +
Sbjct: 241 TNLTDLDLANNQISNLAPLSG-LTKL----------TELKLGANQISNISPLAG-----L 284
Query: 545 GKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLT 604
++ + L +++ + L N ++ P + LT++ L ++N ++
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS 342
Query: 605 GTIPTTFSNLKQIESLDLSYNLLHGKIP-SQLTVLNTL 641
++ +NL I L +N + P + LT + L
Sbjct: 343 D--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 378
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 53.9 bits (128), Expect = 4e-08
Identities = 60/380 (15%), Positives = 111/380 (29%), Gaps = 39/380 (10%)
Query: 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTG-EIPERMATGCFLLEILALS 302
L M L + ++ S D+ + L + + E + L + S
Sbjct: 21 LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDGVEYLNN----LTQINFS 74
Query: 303 NNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRW- 361
NN L K NLT L+ + ++ N + L+ + +
Sbjct: 75 NNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132
Query: 362 -----------LGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCF 410
+ ++SAL + G + L LT L+ + +
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192
Query: 411 SPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGN 470
L + + + L L L+ N+ + L L+ L L N
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250
Query: 471 NYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASV 530
N I P L L ++ + L N +S P + + +E
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308
Query: 531 YGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGI---------DLSCNKLTG 581
L + V TK ++ ++ +S + N+++
Sbjct: 309 LTYLTL---YFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD 365
Query: 582 EIPTQIGYLTRIHALNLSHN 601
P + LTRI L L+
Sbjct: 366 LTP--LANLTRITQLGLNDQ 383
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 91.7 bits (226), Expect = 9e-21
Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 16/274 (5%)
Query: 363 GNLSALEDIRMSNNNLEG--PIPIEFCQLDYLTILDLSN--NAIFGTLPSCFSPAFIEQV 418
+ ++ +S NL PIP L YL L + N + P+ + +
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 419 HLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478
+++ + G + + LVTLD SYN G++P I+ LP L + N I G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 479 VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPT 538
++ N + D +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKI-----------PPTFANLNLAFVDLSRNMLEGDASV 215
Query: 539 QSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598
G ++ + + +++G+DL N++ G +P + L +H+LN+
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632
S NNL G IP NL++ + + N P
Sbjct: 276 SFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 86.3 bits (212), Expect = 6e-19
Identities = 65/262 (24%), Positives = 98/262 (37%), Gaps = 5/262 (1%)
Query: 247 LMDLNLSRNAFNG--SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNN 304
+ +L+LS IPSS A++ L L I L L +++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 305 NLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGN 364
N+ G I + L+ L N +G + S+S+ L G+ N +SG IP G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 365 LSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNK 424
S L + N L +DLS N + G F Q
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 425 IEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCEL 484
+ S L LDL NR +G++P + L L SL + N + GEIP Q L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290
Query: 485 KEVRLIDLSHNNL--SGYIPAC 504
+ + ++N +PAC
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 77.1 bits (188), Expect = 7e-16
Identities = 59/242 (24%), Positives = 85/242 (35%), Gaps = 2/242 (0%)
Query: 271 LERLDISYNQLTG--EIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 328
+ LD+S L IP +A +L + NNL G I LT L L +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 329 NFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQ 388
N +G I D LS + L L S N LSG +P + +L L I N + G IP +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 389 LDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNR 448
L + + S++ S
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 449 FHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYT 508
+ + L+ L L NN I G +P L +LK + +++S NNL G IP
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291
Query: 509 SL 510
Sbjct: 292 RF 293
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 47.8 bits (112), Expect = 3e-06
Identities = 46/278 (16%), Positives = 82/278 (29%), Gaps = 15/278 (5%)
Query: 10 SIGSLPSLKTLYLSYTNFTGTV-VNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLK 68
+ + L LS N + L N L L + + V + +IA T L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 69 YLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTF 128
YL + L + N +P + +L L
Sbjct: 105 YLYITH-------TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP---PSISSLPNLVGI 154
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFP 188
+ + + +S +L + + +L DLS L G+
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214
Query: 189 NWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM 248
+ + L N+ F ++ + L N G +P + L L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL--RNNRIYGTLPQGLTQ-LKFLH 271
Query: 249 DLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIP 286
LN+S N G IP +++ + + N+ P
Sbjct: 272 SLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.2 bits (199), Expect = 3e-17
Identities = 43/281 (15%), Positives = 85/281 (30%), Gaps = 14/281 (4%)
Query: 196 TNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255
+ L L NN + + + L L + N P L L L LS+N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKN 89
Query: 256 AFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF 315
++ L + ++ + + + L + G
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV--ELGTNPLKSSGIENGAFQ 147
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
+ L +++ N T + L L+L N ++ L L+ L + +S
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEG------QL 429
N++ +L L L+NN + +I+ V+L N I
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264
Query: 430 ESIIHDSPYLVTLDLSYN--RFHGSIPNWINILPQLSSLLL 468
+ L N ++ P+ + +++ L
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.8 bits (190), Expect = 3e-16
Identities = 49/313 (15%), Positives = 90/313 (28%), Gaps = 46/313 (14%)
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
+ L L N T N + L L L +N +S P L LE + +S N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 378 LEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSP 437
L+ L L + + + ++ + + + ++ + K G
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 438 YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNL 497
L + ++ +IP + P L+ L L N I L L + + LS N++
Sbjct: 151 KLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 498 SGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557
S L T + H K +
Sbjct: 208 SAVDNGSLANTPHLRELHLNN-----------------------------------NKLV 232
Query: 558 SYYYQGRILTSMSGIDLSCNKLTG------EIPTQIGYLTRIHALNLSHNNLTGT--IPT 609
+ + L N ++ P ++L N + P+
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 292
Query: 610 TFSNLKQIESLDL 622
TF + ++ L
Sbjct: 293 TFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.1 bits (165), Expect = 5e-13
Identities = 44/289 (15%), Positives = 91/289 (31%), Gaps = 48/289 (16%)
Query: 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTL 406
L L +N ++ NL L + + NN + P F L L L LS N + L
Sbjct: 36 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 94
Query: 407 PSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDL--SYNRFHGSIPNWINILPQLS 464
P ++++ + +N+I +S+ + ++ ++L + + G + +LS
Sbjct: 95 PEKMPK-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153
Query: 465 SLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIW 524
+ + + I IP L + + L N ++ A L
Sbjct: 154 YIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLK------------------ 192
Query: 525 CDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP 584
+ L + T ++ + N ++P
Sbjct: 193 ----GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL-------------NNNKLVKVP 235
Query: 585 TQIGYLTRIHALNLSHNNLTGTIPTTF------SNLKQIESLDLSYNLL 627
+ I + L +NN++ F + + L N +
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.8 bits (164), Expect = 8e-13
Identities = 50/227 (22%), Positives = 84/227 (37%), Gaps = 26/227 (11%)
Query: 296 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLS 355
+L L NN + NL NL L L N + + + L LYLS N L
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 356 GRIPRWLGNLSALE-----------------------DIRMSNNNLEGPIPIEFCQLDYL 392
+ L L ++ + G F + L
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 393 TILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGS 452
+ + +++ I T+P P+ + ++HL NKI + + L L LS+N
Sbjct: 153 SYIRIADTNI-TTIPQGLPPS-LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210
Query: 453 IPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG 499
+ P L L L NN + ++P L + K ++++ L +NN+S
Sbjct: 211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.4 bits (150), Expect = 4e-11
Identities = 41/216 (18%), Positives = 65/216 (30%), Gaps = 14/216 (6%)
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495
P LDL N+ L L +L+L NN I P L ++ + LS N
Sbjct: 30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 496 NLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTK 555
L E E T + + + P+ +
Sbjct: 90 QLKELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 556 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLK 615
+ +S I ++ +T IP G + L+L N +T + L
Sbjct: 148 G---------MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLN 195
Query: 616 QIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNL 651
+ L LS+N + L L + N L
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.3 bits (129), Expect = 2e-08
Identities = 44/295 (14%), Positives = 82/295 (27%), Gaps = 45/295 (15%)
Query: 15 PSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQD 74
P L L T + + + N NL LIL + +
Sbjct: 31 PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS--------------------- 68
Query: 75 SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLF-NLSKLKTFDGEIW 133
+ F LE L LS N ++P + L + ++
Sbjct: 69 -----KISPGAFAPLVKLERLY-------LSKNQLKELPEKMPKTLQELRVHENEITKVR 116
Query: 134 AETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVE 193
+ N + + + G L ++ N++
Sbjct: 117 KSVFNGLNQ----MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-- 170
Query: 194 NNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS 253
+L L L N + + LA L +S N P L +L+L+
Sbjct: 171 --PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLN 227
Query: 254 RNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG 308
N +P AD K ++ + + N ++ + + + S +L
Sbjct: 228 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 4e-06
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 565 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 624
+ + +DL NK+T L +H L L +N ++ P F+ L ++E L LS
Sbjct: 29 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88
Query: 625 NLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPD 657
N L L L V + + + +
Sbjct: 89 NQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (185), Expect = 1e-15
Identities = 46/256 (17%), Positives = 80/256 (31%), Gaps = 4/256 (1%)
Query: 196 TNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRN 255
+ + L N + + + L IL + N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 256 AFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKF 315
P++F + L L + E+ + G L+ L L +N LQ
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
+L NL L L GN + + L L L N ++ P +L L + +
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHD 435
NNL L L L L++N + A++++ S +++ L +
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270
Query: 436 SPYLVTLDLSYNRFHG 451
L+ N G
Sbjct: 271 RDL---KRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (151), Expect = 2e-11
Identities = 44/285 (15%), Positives = 79/285 (27%), Gaps = 40/285 (14%)
Query: 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTL 406
++L N +S L + + +N L F L L LDLS+NA ++
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 407 -PSCFSP-AFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLS 464
P+ F + +HL + ++ + L L L N + L L+
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 465 SLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIW 524
L L N I L + + L N ++ P + S
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 525 CDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP 584
L ++ + L+ N +
Sbjct: 217 P----------------------------------TEALAPLRALQYLRLNDNPWVCDCR 242
Query: 585 TQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 629
+ S + + ++P L + L+ N L G
Sbjct: 243 A-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 8e-10
Identities = 45/219 (20%), Positives = 71/219 (32%), Gaps = 26/219 (11%)
Query: 318 TNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377
R+ L GN + + S CR L L+L N L+ L+ LE + +S+N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 378 LEGPI-PIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF-IEQVHLSKNKIEGQLESIIHD 435
+ P F L L L L + P F ++ ++L N ++ + D
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEV-------- 487
L L L NR L L LLL N + P +L +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 488 ----------------RLIDLSHNNLSGYIPACLVYTSL 510
+ + L+ N A ++ L
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 5e-09
Identities = 42/238 (17%), Positives = 70/238 (29%), Gaps = 12/238 (5%)
Query: 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG 499
VT ++P + I + L N I + + ++ L N L+
Sbjct: 14 VTTSCPQQGLQ-AVP--VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70
Query: 500 YIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSY 559
A +L E D A+ +G L +
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL---------HTLHLDRCGLQELG 121
Query: 560 YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIES 619
R L ++ + L N L L + L L N ++ F L ++
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 620 LDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677
L L N + P L L + NNLS + +A + NP++C
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 3e-07
Identities = 37/269 (13%), Positives = 78/269 (28%), Gaps = 17/269 (6%)
Query: 15 PSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQD 74
+ + ++L + V NL ++ S++ ++ L+ L + D
Sbjct: 32 AASQRIFLHGNRISH-VPAASFRACRNL-TILWLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 75 SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWA 134
+ ++ F L L + + + L+ L+ + A
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHL---------DRCGLQELGPGLFRGLAALQYLYLQDNA 140
Query: 135 ETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVEN 194
++ LT + L G + H L L ++ P+ +
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254
+ L ANN + + L L ++ N + L S
Sbjct: 201 GRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSS 257
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTG 283
+ S+P A + ++ N L G
Sbjct: 258 SEVPCSLPQRLAGRDL---KRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 6e-05
Identities = 28/205 (13%), Positives = 49/205 (23%), Gaps = 11/205 (5%)
Query: 485 KEVRLIDLSHNNLSGYIPACLV-YTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPP 543
+ I L N +S A +L T +W +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNL----------TILWLHSNVLARIDAAAFTGLAL 81
Query: 544 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL 603
+ + + L + + L L P L + L L N L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 604 TGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFS 663
TF +L + L L N + L++L + N ++ P
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 664 TFEEDSYEGNPFLCGWPLSKSCDDN 688
N + +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRA 226
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (141), Expect = 9e-10
Identities = 50/443 (11%), Positives = 105/443 (23%), Gaps = 29/443 (6%)
Query: 225 LDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNG----SIPSSFADMKMLERLDISYNQ 280
LD+ E+ L + L I S+ L L++ N+
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 281 LTGE----IPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISD 336
L + + + T ++ L+L N L G + + + + + D
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126
Query: 337 SLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILD 396
+ L ++ + ++ E + + D
Sbjct: 127 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 186
Query: 397 LSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNW 456
P +E ++ + + + S +
Sbjct: 187 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 246
Query: 457 INILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGED--- 513
L SS L E I + C L L
Sbjct: 247 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 306
Query: 514 YHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRI-------- 565
E G ++ + + C S ++ N G
Sbjct: 307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 366
Query: 566 -LTSMSGIDLSCNKLTGE----IPTQIGYLTRIHALNLSHNNLTGTIPTTFS-----NLK 615
+ + + L+ ++ + + + L+LS+N L
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 616 QIESLDLSYNLLHGKIPSQLTVL 638
+E L L ++ +L L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 40/416 (9%), Positives = 87/416 (20%), Gaps = 25/416 (6%)
Query: 271 LERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG----HIFSKKFNLTNLMRLQLD 326
++ LDI +L+ + +++ L + L I S L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 327 GNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEF 386
N + + L G +R E +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123
Query: 387 CQLDYLTI---LDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLD 443
L + L L + + + + + +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183
Query: 444 LSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNN------L 497
+ + L L G + K +N +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243
Query: 498 SGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNM 557
+ P L +S + + + E + +
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303
Query: 558 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLT--------RIHALNLSHNNLTGTIPT 609
S SC+ L +I L +
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363
Query: 610 TFSNLKQIESLDLSYNLLHGK----IPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQ 661
+ L L+ + + + L ++L ++ N L ++ +
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (108), Expect = 9e-06
Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 5/113 (4%)
Query: 572 IDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTG----TIPTTFSNLKQIESLDLSYNL 626
+D+ C +L+ ++ L + + L LT I + + L+L N
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 627 LHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGW 679
L + K+ +L
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 8e-05
Identities = 43/472 (9%), Positives = 119/472 (25%), Gaps = 36/472 (7%)
Query: 16 SLKTLYLSYTNFTGTVVNQELHNFTNLEELILDK---SDLHVSQLLSSIASFTSLKYLSM 72
+++L + + + L + + LD ++ + S++ +L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 73 QDSVFKG----ALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTF 128
+ + + ++ L + L + + P L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 129 DGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFP 188
+ P+ + L + + ++ P
Sbjct: 123 LLGDAGLQLLCEGLLDPQCR-------------LEKLQLEYCSLSAASCEPLASVLRAKP 169
Query: 189 NWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM 248
++ +N + L + + L + I L
Sbjct: 170 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 229
Query: 249 DLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQG 308
+L L N + + + + G + A +
Sbjct: 230 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 289
Query: 309 HIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSAL 368
++ + + + S + +C A + + + L +
Sbjct: 290 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 349
Query: 369 EDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF-----IEQVHLSKN 423
+ + + L +L L++ + + S + + ++ LS N
Sbjct: 350 NRLEDAGVRELCQGLGQPGS--VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 407
Query: 424 KIEGQ-----LESIIHDSPYLVTLDLSYNRFHGSIPNWINIL----PQLSSL 466
+ +ES+ L L L + + + + L P L +
Sbjct: 408 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 49/428 (11%), Positives = 107/428 (25%), Gaps = 30/428 (7%)
Query: 2 IDGSKVLQSIGSLPSLKTLYLSYTNFTGTVVN---QELHNFTNLEELILDK---SDLHVS 55
+ ++ + + L + + L T L L EL L D+ V
Sbjct: 14 LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 73
Query: 56 QLLSSIASF-TSLKYLSMQDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPI 114
+L + + ++ LS+Q+ GA G + L L + L + Q+
Sbjct: 74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 133
Query: 115 SLEPL-----------FNLSKLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTF 163
+ + + +
Sbjct: 134 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 193
Query: 164 PKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLA 223
LK + + +V + +L L L +N L +
Sbjct: 194 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 253
Query: 224 ILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTG 283
+ + G + + D +
Sbjct: 254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 313
Query: 284 EIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRL 343
+ + F + ++ L + F + ++N + +
Sbjct: 314 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL---EDAGVRELCQGLGQPGSV 370
Query: 344 LAGLYLSDNHLSGR----IPRWLGNLSALEDIRMSNNNLEGPIPIEFCQ-----LDYLTI 394
L L+L+D +S + L +L ++ +SNN L ++ + L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 395 LDLSNNAI 402
L L +
Sbjct: 431 LVLYDIYW 438
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (135), Expect = 3e-09
Identities = 39/276 (14%), Positives = 80/276 (28%), Gaps = 7/276 (2%)
Query: 371 IRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEG-QL 429
+ ++ NL + + + + L FSP ++ + LS + IE L
Sbjct: 5 LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63
Query: 430 ESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRL 489
I+ L L L R I N + L L L E +Q RL
Sbjct: 64 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123
Query: 490 IDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEET 549
+L+ + + V ++ + + P + +
Sbjct: 124 DELNLSWCFDFTEKH-VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 550 VQFTTKNMSYYYQGRILTSMSGIDLS-CNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIP 608
+ + L + + LS C + E ++G + + L + GT+
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 609 TTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVF 644
L L ++ + + ++
Sbjct: 243 LLKEALPH---LQINCSHFTTIARPTIGNKKNQEIW 275
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (126), Expect = 4e-08
Identities = 37/275 (13%), Positives = 84/275 (30%), Gaps = 18/275 (6%)
Query: 225 LDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGE 284
LD++ + + G++ R+ + + F+ + ++ +D+S + +
Sbjct: 5 LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61
Query: 285 IPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLL 344
+ + C L+ L+L L I + +NL+RL L G + E +
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 345 AGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFG 404
L+ + + + A ++ NL G + N
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181
Query: 405 TLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSY-NRFHGSIPNWINILPQL 463
S ++ YL L LS + +P L
Sbjct: 182 LSDSV--------------MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227
Query: 464 SSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
+L + +G + + L +++ ++
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIA 262
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 46/329 (13%), Positives = 93/329 (28%), Gaps = 59/329 (17%)
Query: 18 KTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQDSVF 77
+TL L+ N V + L + + + Q L+ S ++++ + +SV
Sbjct: 3 QTLDLTGKNLHPDVTGRLL----SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58
Query: 78 KGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWAETE 137
+ + + L++L + ++L + L S L + +
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDP---------IVNTLAKNSNLVRLNLSGCSGFS 109
Query: 138 SHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTN 197
L+ K + + ++ LNLSG N +
Sbjct: 110 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD--- 166
Query: 198 LETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR-NA 256
+ L LD+S + + + L L L+LSR
Sbjct: 167 --------------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 212
Query: 257 FNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFN 316
++ L+ L + G L L L
Sbjct: 213 IIPETLLELGEIPTLKTLQVF--------------GIVPDGTLQLLKEALP--------- 249
Query: 317 LTNLMRLQLDGNNFTGEISDSLSNCRLLA 345
LQ++ ++FT ++ N +
Sbjct: 250 -----HLQINCSHFTTIARPTIGNKKNQE 273
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 30/239 (12%), Positives = 75/239 (31%), Gaps = 7/239 (2%)
Query: 5 SKVLQSIGSLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASF 64
+ L S ++ + LS + + ++ L + L+ L L+ L +++++A
Sbjct: 36 DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKN 94
Query: 65 TSLKYLSMQDSV-FKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLS 123
++L L++ F L+ L++ W + + E + L+
Sbjct: 95 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154
Query: 124 KLKTFDGEIWAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL 183
++ + L + + + L++ LS
Sbjct: 155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--EFFQLNYLQHLSLSRCYD 212
Query: 184 SGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGT 242
+ L+TL + G+ ++ + L ++ + F IG
Sbjct: 213 IIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGN 268
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 0.001
Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 11/230 (4%)
Query: 173 LKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFF 232
+++ DLS+ + + + ++ + L+ L L L + L L++S
Sbjct: 48 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107
Query: 233 QGHIPV-EIGTYLPGLMDLNL------SRNAFNGSIPSSFADMKMLERLDISYNQLTGEI 285
+ + + L +LNL + ++ + L N ++
Sbjct: 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 167
Query: 286 PERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDG-NNFTGEISDSLSNCRLL 344
+ L+ + + L+ F + F L L L L + E L L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227
Query: 345 AGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTI 394
L + G + AL ++++ ++ I
Sbjct: 228 KTLQVFGIVPDGTLQLL---KEALPHLQINCSHFTTIARPTIGNKKNQEI 274
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 56.0 bits (133), Expect = 8e-09
Identities = 54/312 (17%), Positives = 92/312 (29%), Gaps = 14/312 (4%)
Query: 347 LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEG-PIPIEFCQLDYLTILDLSNNAIFGT 405
L L++ LS +P +L +L S N+L P + + + +L +
Sbjct: 43 LELNNLGLS-SLPELPPHLESLV---ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 98
Query: 406 LPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSS 465
L + + L + + L+ I D+ L L +
Sbjct: 99 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL 158
Query: 466 LLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWC 525
L L +L ++ L S + + +L +
Sbjct: 159 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 218
Query: 526 DRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT 585
L + E Q T L+ + N + EI +
Sbjct: 219 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 278
Query: 586 QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFK 645
+ LN+S+N L +P L E L S+N L ++P L L
Sbjct: 279 LCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPELPQNLKQL---H 330
Query: 646 VAYNNLSGKIPD 657
V YN L + PD
Sbjct: 331 VEYNPLR-EFPD 341
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 46/308 (14%), Positives = 93/308 (30%), Gaps = 14/308 (4%)
Query: 13 SLPSLKTLYLSYTNFTGTVVNQELHNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSM 72
P L++L S + T + + + +L + L L +
Sbjct: 56 LPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALS--DLPPLLEYLGVSNNQLE 111
Query: 73 QDSVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEI 132
+ + + + N + L L NL L +
Sbjct: 112 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN 171
Query: 133 WAETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLV 192
+ + ++ + + ++ + FL + N + +L + V
Sbjct: 172 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 231
Query: 193 ENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNL 252
+N + L + F I S ++ + + P L +LN+
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291
Query: 253 SRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFS 312
S N +P+ LERL S+N L E+PE L+ L + N L+
Sbjct: 292 SNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQN----LKQLHVEYNPLRE-FPD 341
Query: 313 KKFNLTNL 320
++ +L
Sbjct: 342 IPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 45/331 (13%), Positives = 89/331 (26%), Gaps = 21/331 (6%)
Query: 16 SLKTLYLSYTNFTGTVVNQEL-HNFTNLEELILDKSDLHVSQLLSSIASFTSLKYLSMQD 74
L L+ + L +LE L+ + L L + + +
Sbjct: 39 QAHELELNNLGLS------SLPELPPHLESLVASCNSLTE---LPELPQSLKSLLVDNNN 89
Query: 75 SVFKGALHGQDFRKFKNLEHLDMGWVQLILSNNHFFQIPISLEPLFNLSKLKTFDGEIWA 134
L + L+ S + +
Sbjct: 90 LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149
Query: 135 ETESHYNSVTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVEN 194
+ LT+I L + + ++ +L
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209
Query: 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSR 254
+ L + + + + ++ ++ + I + L L
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269
Query: 255 NAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKK 314
NA + I S LE L++S N+L E+P LE L S N+L
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA----EVP 320
Query: 315 FNLTNLMRLQLDGNNFTG--EISDSLSNCRL 343
NL +L ++ N +I +S+ + R+
Sbjct: 321 ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.0 bits (89), Expect = 0.002
Identities = 50/321 (15%), Positives = 96/321 (29%), Gaps = 18/321 (5%)
Query: 178 LSHLNLSGNFPNWLVENNTNLETLLLANNSL---------FGSFRMPIHSYQKLAILDVS 228
L L+ + L E +LE+L+ + NSL S + ++ + L+ L
Sbjct: 40 AHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL 99
Query: 229 KNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPER 288
+ + N S+ LE + NQL +
Sbjct: 100 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQ 159
Query: 289 MATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLY 348
+ S L S + + L+ ++ L
Sbjct: 160 NLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL 219
Query: 349 LSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
+ L+ L ++ S L+ I + L N +
Sbjct: 220 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 279
Query: 409 CFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLL 468
C P +E++++S N +L + P L L S+N +P + L L +
Sbjct: 280 CDLPPSLEELNVSNN----KLIELPALPPRLERLIASFNHL-AEVP---ELPQNLKQLHV 331
Query: 469 GNNYIEGEIPVQLCELKEVRL 489
N + E P ++++R+
Sbjct: 332 EYNPLR-EFPDIPESVEDLRM 351
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 7/189 (3%)
Query: 235 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCF 294
+P ++ L+LS N ++ L +L++ +LT +
Sbjct: 24 ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80
Query: 295 LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354
L++ ++N + L L L + N T +L L LYL N L
Sbjct: 81 TLDL----SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 355 SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAF 414
P L LE + ++NNNL L+ L L L N+++ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 415 IEQVHLSKN 423
+ L N
Sbjct: 197 LPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (126), Expect = 3e-08
Identities = 39/222 (17%), Positives = 58/222 (26%), Gaps = 19/222 (8%)
Query: 408 SCFSPAFIEQVHLSKNKIEGQLESIIHD-SPYLVTLDLSYNRFHGSIPNWINILPQLSSL 466
A +V+ K L ++ D L LS N + + +L+ L
Sbjct: 5 EVSKVASHLEVNCDKR----NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 467 LLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCD 526
L + L + +DLSHN L +L TS+
Sbjct: 61 NLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 527 RASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ 586
G G + T + N LT
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-----------ANNNLTELPAGL 167
Query: 587 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628
+ L + L L N+L TIP F + L N
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 6e-07
Identities = 36/207 (17%), Positives = 57/207 (27%), Gaps = 10/207 (4%)
Query: 172 DLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNF 231
+ NL+ P L + L L+ N L+ + Y +L L++ +
Sbjct: 11 SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 232 FQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMAT 291
L L + + +P
Sbjct: 67 LTKLQVDGTLPVLGTLD-----LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 292 GCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSD 351
G L+ L L N L+ L +L L NN T + L+ L L L +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 352 NHLSGRIPRWLGNLSALEDIRMSNNNL 378
N L IP+ L + N
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 5/195 (2%)
Query: 316 NLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSN 375
+ + + + D N T + L + L+LS+N L L + L + +
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 376 NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHD 435
L L LDLS+N + + + + +S N++ +
Sbjct: 65 AE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 436 SPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHN 495
L L L N P + P+L L L NN + L L+ + + L N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 496 NLSGYIPACLVYTSL 510
+L L
Sbjct: 183 SLYTIPKGFFGSHLL 197
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 6e-06
Identities = 35/245 (14%), Positives = 66/245 (26%), Gaps = 41/245 (16%)
Query: 433 IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDL 492
+ + ++ ++P ++ + L L N + L + ++L
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 493 SHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQF 552
L+ + P D + P V F
Sbjct: 63 DRAELTKL-------------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109
Query: 553 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFS 612
R L + + L N+L P + ++ L+L++NNLT +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 613 NLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEG 672
L+ +++L L N IP G
Sbjct: 170 GLENLDTLLLQ-------------------------ENSLYTIPKGFFGSHLLPFAFLHG 204
Query: 673 NPFLC 677
NP+LC
Sbjct: 205 NPWLC 209
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 2e-07
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Query: 567 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYN 625
SG+ + + + + + L + + + L ++ +L + +
Sbjct: 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 626 LLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677
L P L+ +++N L + + Q + +E GNP C
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 2e-05
Identities = 24/225 (10%), Positives = 49/225 (21%), Gaps = 22/225 (9%)
Query: 428 QLESIIHDSP-YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKE 486
++ I D P + L + + L + + N + I +
Sbjct: 19 KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78
Query: 487 VRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGK 546
+ + +L + T I
Sbjct: 79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138
Query: 547 EETVQFTTKNMSYYYQGRIL------------------TSMSGIDLSCNKLTGEIPTQIG 588
+ ++ IL N L
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198
Query: 589 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPS 633
+ L++S + NLK++ + YNL K+P+
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARST-YNL--KKLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 5/215 (2%)
Query: 196 TNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLM--DLNLS 253
N L L + + L +++S+N I ++ + LP L + +
Sbjct: 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88
Query: 254 RNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSK 313
N + + + L + ++ + +L + + N S
Sbjct: 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148
Query: 314 KFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373
+ L L+ N + + + +L +N+L S + +
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208
Query: 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
S + L L N LP+
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 33/260 (12%), Positives = 77/260 (29%), Gaps = 51/260 (19%)
Query: 364 NLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKN 423
L+ I +N+ + LD +T L +
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV--------------------T 54
Query: 424 KIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCE 483
IEG + L+ L+L N+ + L +++ L L N ++ + +
Sbjct: 55 TIEG-----VQYLNNLIGLELKDNQIT--DLAPLKNLTKITELELSGNPLKNVSAIAGLQ 107
Query: 484 LKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPP 543
+ + + + L D ++ + + Y S
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG-------- 159
Query: 544 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL 603
+S L+ ++ + NK++ P + L + ++L +N +
Sbjct: 160 ----------NAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207
Query: 604 TGTIPTTFSNLKQIESLDLS 623
+ P +N + + L+
Sbjct: 208 SDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 338 LSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397
L+N L L DN +S P L +L L ++ + NN + P L I+ L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
Query: 398 SN 399
+N
Sbjct: 225 TN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 25/209 (11%), Positives = 61/209 (29%), Gaps = 14/209 (6%)
Query: 439 LVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLS 498
+ + + ++ L +++L + VQ L + ++L N ++
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76
Query: 499 GYIPA----CLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTT 554
P + L + + + ++ + T P G
Sbjct: 77 DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136
Query: 555 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 614
+ + LS T + L+++ L N ++ P ++L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194
Query: 615 KQIESLDLSYNLLHGKIP----SQLTVLN 639
+ + L N + P S L ++
Sbjct: 195 PNLIEVHLKNNQISDVSPLANTSNLFIVT 223
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 3/149 (2%)
Query: 260 SIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTN 319
IP L ++ N+L + + L L L N L G + ++
Sbjct: 22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 320 LMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLE 379
+ LQL N + L L L DN +S +P +L++L + +++N
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Query: 380 GPIPIEFCQLDYLTILDLSNNAIFGTLPS 408
+ + ++L L+ A PS
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPS 167
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.6 bits (97), Expect = 4e-05
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 177 DLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHI 236
L+H +L+ + +E + L L++N L R + L L+V +
Sbjct: 4 HLAHKDLT-VLCH--LEQLLLVTHLDLSHNRL----RALPPALAALRCLEVLQASDNALE 56
Query: 237 PVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISYNQLTGEIPER 288
V+ LP L +L L N + L L++ N L E +
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 9e-05
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 298 ILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGR 357
+L L++ +L + L + L L N +L+ R L L SDN L
Sbjct: 2 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58
Query: 358 IPRWLGNLSALEDIRMSNNNLEG-PIPIEFCQLDYLTILDLSNNAI 402
NL L+++ + NN L+ L +L+L N++
Sbjct: 59 DGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 28/121 (23%)
Query: 373 MSNNNLEGPIPIEFCQLDYLTILDLSNNAIFG----------------------TLPSCF 410
+++ +L +E QL +T LDLS+N + +
Sbjct: 5 LAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 411 SPAFIEQVHLSKNKIEG-QLESIIHDSPYLVTLDLSYNRFH---GSIPNWINILPQLSSL 466
+ ++++ L N+++ + P LV L+L N G +LP +SS+
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Query: 467 L 467
L
Sbjct: 123 L 123
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 274 LDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGE 333
L +++ LT + L+ L LS+N L+ L L L ++ E
Sbjct: 3 LHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVL--QASDNALE 56
Query: 334 ISDSLSNCRLLAGLYLSDNHL-SGRIPRWLGNLSALEDIRMSNNNLEG 380
D ++N L L L +N L + L + L + + N+L
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 23/105 (21%)
Query: 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPE--------------------RM 289
L+L+ ++ + ++ LD+S+N+L P
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 290 ATGCFLLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNNFTGE 333
L+ L L NN LQ + + L+ L L GN+ E
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 8e-04
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 3/106 (2%)
Query: 394 ILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSI 453
+L L++ + L + + LS N++ ++ + + + + + ++
Sbjct: 2 VLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPAL--AALRCLEVLQASDNALENV 58
Query: 454 PNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG 499
N+ LL N + L + L++L N+L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 4e-05
Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 7/139 (5%)
Query: 275 DISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEI 334
++ Q+ ++ M+ + AL L + L ++ +
Sbjct: 3 ELKPEQVE-QLKLIMSK-RYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATL 57
Query: 335 SDSLSNCRLLAGLYLSDNHLSGR--IPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYL 392
N L L LS+N L + + L+ + +S N L+ ++ + L
Sbjct: 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117
Query: 393 TILDLSNNAIFGTLPSCFS 411
L L N++ T +
Sbjct: 118 EELWLDGNSLSDTFRDQST 136
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 6e-04
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 392 LTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRF-- 449
LDL + P + ++ + L I + P L++L+LS NR
Sbjct: 24 QQALDLKG---LRSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYR 79
Query: 450 HGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTS 509
+ + + P L L L N ++ E + + ++ + L N+LS Y S
Sbjct: 80 LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 42.9 bits (99), Expect = 9e-05
Identities = 33/337 (9%), Positives = 86/337 (25%), Gaps = 23/337 (6%)
Query: 296 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGE----ISDSLSNCRLLAGLYLSD 351
L++ A++ + + +F+ ++ + L GN E +S+++++ + L SD
Sbjct: 10 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 352 NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS 411
L L + L + + S +
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-------TAQEPLIDFLSKHT 121
Query: 412 PAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNN 471
P +H + + + V SI N L S
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181
Query: 472 YIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVY 531
+ L +K V+ + L ++ T + ++
Sbjct: 182 FQ---SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 238
Query: 532 GSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI---- 587
+ + + + + + + + L N++ + +
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKL-ENIGLQTLRLQYNEIELDAVRTLKTVI 297
Query: 588 -GYLTRIHALNLSHNNLT--GTIPTTFSNLKQIESLD 621
+ + L L+ N + + +
Sbjct: 298 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 40.6 bits (93), Expect = 6e-04
Identities = 32/306 (10%), Positives = 79/306 (25%), Gaps = 18/306 (5%)
Query: 46 ILDKSDLHVSQLLSSIASFTSLKYLSMQDSVF--KGALH-GQDFRKFKNLEHLDMGWVQL 102
+ + + + + S+K + + + + A ++ K+LE + +
Sbjct: 12 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71
Query: 103 ILSNNHFFQIPISLEPLF-NLSKLKTFDGEIWAETE----SHYNSVTPKFQLTSISLSGY 157
+ + L KL T A + ++ L + L
Sbjct: 72 GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131
Query: 158 IDGGTFPKFLYHQHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIH 217
G + + N N ++ + +
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191
Query: 218 SYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDIS 277
+ I + N + + ++ + L L ++
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251
Query: 278 YNQLTGEIPERMATGCFL-----LEILALSNNNLQGHIFSK-----KFNLTNLMRLQLDG 327
L+ + L+ L L N ++ + +L+ L+L+G
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311
Query: 328 NNFTGE 333
N F+ E
Sbjct: 312 NRFSEE 317
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 41.5 bits (96), Expect = 1e-04
Identities = 26/205 (12%), Positives = 65/205 (31%), Gaps = 26/205 (12%)
Query: 419 HLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIP 478
+L K + ++ + + + + I LP ++ L L N +
Sbjct: 30 NLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD--- 82
Query: 479 VQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPT 538
L+ ++ + S+ +
Sbjct: 83 ---------------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 127
Query: 539 QSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598
+ + E++ ++ LT + + L N+++ +P + LT++ L L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185
Query: 599 SHNNLTGTIPTTFSNLKQIESLDLS 623
S N+++ + LK ++ L+L
Sbjct: 186 SKNHISD--LRALAGLKNLDVLELF 208
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 578 KLTGEIPTQIGY---LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 628
KLT E+ Q R L+L + I + L Q +++D S N +
Sbjct: 2 KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 54
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 6e-04
Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 8/140 (5%)
Query: 263 SSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMR 322
+ + + LD+ ++ I + + + S+N + L L
Sbjct: 12 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67
Query: 323 LQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG----RIPRWLGNLSALEDIRMSNNNL 378
L ++ N L L L++N L L +L+ L +R N
Sbjct: 68 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127
Query: 379 EGPIPIEFCQLDYLTILDLS 398
+ ++ + +LD
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.81 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.8 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.78 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.72 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.7 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.69 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.62 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.59 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.59 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.47 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.44 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.42 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.42 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.41 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.41 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.39 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.24 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.18 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.05 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.15 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.09 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.41 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.34 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.82 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.71 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=6.3e-31 Score=272.52 Aligned_cols=258 Identities=32% Similarity=0.534 Sum_probs=211.0
Q ss_pred CCCeeeCcCCcCCC--CcchhhcCCCCCcEEEccc-CcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEE
Q 040297 343 LLAGLYLSDNHLSG--RIPRWLGNLSALEDIRMSN-NNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVH 419 (773)
Q Consensus 343 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 419 (773)
+++.|++++|.+.+ .+|..++++++|++|++++ |.+.|.+|.++.++++|++|++++|++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l----------------- 113 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV----------------- 113 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC-----------------
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccc-----------------
Confidence 45666666666655 2455666666666666654 556656666666666666666665554
Q ss_pred CCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCC-CEEEccCCcCC
Q 040297 420 LSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEV-RLIDLSHNNLS 498 (773)
Q Consensus 420 l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~ 498 (773)
.+..+..+..++.|+.+++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|+++
T Consensus 114 ------~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~ 187 (313)
T d1ogqa_ 114 ------SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp ------EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred ------cccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence 44555566777888999999998888888899999999999999999998899888888876 88999999999
Q ss_pred CcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCc
Q 040297 499 GYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK 578 (773)
Q Consensus 499 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 578 (773)
+..|..+... ....++++++.
T Consensus 188 ~~~~~~~~~l-----------------------------------------------------------~~~~l~l~~~~ 208 (313)
T d1ogqa_ 188 GKIPPTFANL-----------------------------------------------------------NLAFVDLSRNM 208 (313)
T ss_dssp EECCGGGGGC-----------------------------------------------------------CCSEEECCSSE
T ss_pred cccccccccc-----------------------------------------------------------ccccccccccc
Confidence 8887765542 34468999999
Q ss_pred CcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCC
Q 040297 579 LTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDR 658 (773)
Q Consensus 579 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 658 (773)
..+.+|..++.+++++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|+.+..+++|++|++++|+++|.+|.
T Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~- 286 (313)
T d1ogqa_ 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ- 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-
Confidence 999999999999999999999999997765 588999999999999999999999999999999999999999999997
Q ss_pred CcccccCCcCcccCCCCCCCCCCCCCC
Q 040297 659 VAQFSTFEEDSYEGNPFLCGWPLSKSC 685 (773)
Q Consensus 659 ~~~~~~l~~~~l~~Np~lC~~~l~~~c 685 (773)
++.+++|+.+++.||+.+||.|+. .|
T Consensus 287 ~~~L~~L~~l~l~~N~~l~g~plp-~c 312 (313)
T d1ogqa_ 287 GGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccCCCCCHHHhCCCccccCCCCC-CC
Confidence 588999999999999999998874 55
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=2.5e-29 Score=260.43 Aligned_cols=253 Identities=32% Similarity=0.494 Sum_probs=178.2
Q ss_pred CCCCcEEEcccccCCc--cccccccCCCCCCeeeCcC-CcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCc
Q 040297 317 LTNLMRLQLDGNNFTG--EISDSLSNCRLLAGLYLSD-NHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLT 393 (773)
Q Consensus 317 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 393 (773)
-.+++.|++++|.+.+ .+|..++++++|++|++++ |.+.|.+|..|+++++|++|++++|++.+..+..+..+..|+
T Consensus 49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence 3479999999999987 4789999999999999987 899999999999999999999999999988888888899999
Q ss_pred EEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCC-cEEEccCcc
Q 040297 394 ILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQL-SSLLLGNNY 472 (773)
Q Consensus 394 ~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~ 472 (773)
.++++.|.+.+.+|. .+.+++.++.+++++|.+.+.+|..+..+..+ +.+++++|+
T Consensus 129 ~l~l~~N~~~~~~p~-----------------------~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~ 185 (313)
T d1ogqa_ 129 TLDFSYNALSGTLPP-----------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EEECCSSEEESCCCG-----------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ccccccccccccCch-----------------------hhccCcccceeecccccccccccccccccccccccccccccc
Confidence 988888876655543 34455555555555555555555555555443 556666666
Q ss_pred ccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEE
Q 040297 473 IEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQF 552 (773)
Q Consensus 473 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (773)
+++..|..+..+..+ .++++++.+.|.+|..+..
T Consensus 186 l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~--------------------------------------------- 219 (313)
T d1ogqa_ 186 LTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGS--------------------------------------------- 219 (313)
T ss_dssp EEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCT---------------------------------------------
T ss_pred ccccccccccccccc-ccccccccccccccccccc---------------------------------------------
Confidence 665555555554433 4666666655555543322
Q ss_pred EecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCC
Q 040297 553 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632 (773)
Q Consensus 553 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 632 (773)
+++++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.|+++++|++|||++|+++|.+|
T Consensus 220 -------------~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP 285 (313)
T d1ogqa_ 220 -------------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp -------------TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred -------------ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence 2355666666666665433 46666677777777777777777777777777777777777777666
Q ss_pred cccccCCCCCEEEccCCc-ccc
Q 040297 633 SQLTVLNTLAVFKVAYNN-LSG 653 (773)
Q Consensus 633 ~~l~~l~~L~~L~ls~N~-l~~ 653 (773)
+ +.++++|+.+++++|+ +.|
T Consensus 286 ~-~~~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 286 Q-GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp C-STTGGGSCGGGTCSSSEEES
T ss_pred C-cccCCCCCHHHhCCCccccC
Confidence 3 4566667777777776 455
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=1.7e-26 Score=246.55 Aligned_cols=355 Identities=21% Similarity=0.274 Sum_probs=200.0
Q ss_pred CCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCcc
Q 040297 178 LSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAF 257 (773)
Q Consensus 178 L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 257 (773)
+...++++.+.. +.+.+|++|+++++.++.. ..+..+++|++|++++|+++ .++. +..+++|++|++++|.+
T Consensus 29 l~~~~~~~~~~~---~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i 100 (384)
T d2omza2 29 LGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQI 100 (384)
T ss_dssp TTCSSTTSEECH---HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCC
T ss_pred hCCCCCCCccCH---HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccc
Confidence 344444444432 2345667777777666542 24555666666666666666 3442 23366666666666666
Q ss_pred CccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCcccccc
Q 040297 258 NGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDS 337 (773)
Q Consensus 258 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 337 (773)
.+.. .++++++|+.|+++++.++ .++... ....+.......|.+...................... ....
T Consensus 101 ~~i~--~l~~l~~L~~L~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 170 (384)
T d2omza2 101 ADIT--PLANLTNLTGLTLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKP 170 (384)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGG
T ss_pred cccc--ccccccccccccccccccc-cccccc--ccccccccccccccccccccccccccccccccccccc-----hhhh
Confidence 5432 2566666666666666665 222211 2344555555555544332222111111111111110 1111
Q ss_pred ccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeE
Q 040297 338 LSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQ 417 (773)
Q Consensus 338 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~ 417 (773)
+...+.........|... ....+..+++++.+++++|.+++..| +..+++ |+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~-----------------------L~~ 223 (384)
T d2omza2 171 LANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTN-----------------------LDE 223 (384)
T ss_dssp GTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTT-----------------------CCE
T ss_pred hccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCC-----------------------CCE
Confidence 222333333333333322 12223344444455554444443322 223344 444
Q ss_pred EECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcC
Q 040297 418 VHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNL 497 (773)
Q Consensus 418 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 497 (773)
|++++|.++.. ..+..+++|+.+++++|++++..+ +..+++|++|++++|++++.. .+..++.++.+++++|.+
T Consensus 224 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l 297 (384)
T d2omza2 224 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQL 297 (384)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCC
T ss_pred EECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccc
Confidence 44444444432 235566777777777777765432 566777777777777776432 366777788888888877
Q ss_pred CCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccC
Q 040297 498 SGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCN 577 (773)
Q Consensus 498 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 577 (773)
++. + .+ ..+++++.|++++|
T Consensus 298 ~~~-~-~~----------------------------------------------------------~~~~~l~~L~ls~n 317 (384)
T d2omza2 298 EDI-S-PI----------------------------------------------------------SNLKNLTYLTLYFN 317 (384)
T ss_dssp SCC-G-GG----------------------------------------------------------GGCTTCSEEECCSS
T ss_pred ccc-c-cc----------------------------------------------------------chhcccCeEECCCC
Confidence 642 1 11 11347778888888
Q ss_pred cCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCC
Q 040297 578 KLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYN 649 (773)
Q Consensus 578 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 649 (773)
++++.. .+..+++|++|++++|+|++ +| .|+++++|++||+++|++++.+| +.++++|+.|++++|
T Consensus 318 ~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 318 NISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 888543 37788888888888888884 44 58888888888888888887665 788888888888887
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=2.6e-26 Score=245.21 Aligned_cols=342 Identities=23% Similarity=0.261 Sum_probs=217.5
Q ss_pred CCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCcc
Q 040297 218 SYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLE 297 (773)
Q Consensus 218 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 297 (773)
.+.+|++|+++++.++ .+. ++. .+++|++|++++|++++.. .++++++|++|++++|.+. .++. ...+++|+
T Consensus 42 ~l~~l~~L~l~~~~I~-~l~-gl~-~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i~~--l~~l~~L~ 113 (384)
T d2omza2 42 DLDQVTTLQADRLGIK-SID-GVE-YLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP--LANLTNLT 113 (384)
T ss_dssp HHTTCCEEECCSSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred HhCCCCEEECCCCCCC-Ccc-ccc-cCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-cccc--cccccccc
Confidence 3455666666666655 332 222 2556666666666665332 2555666666666666555 3332 22355555
Q ss_pred EEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCc
Q 040297 298 ILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNN 377 (773)
Q Consensus 298 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 377 (773)
.|+++++.+++..+ ......+.......|.+ ....+................
T Consensus 114 ~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l------------------------~~~~~~~~~~~~~~~~~~~~~-- 165 (384)
T d2omza2 114 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTI------------------------SDISALSGLTSLQQLSFGNQV-- 165 (384)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEE------------------------CCCGGGTTCTTCSEEEEEESC--
T ss_pred cccccccccccccc--ccccccccccccccccc------------------------ccccccccccccccccccccc--
Confidence 55555555444322 12233444444444433 322221111111111111111
Q ss_pred CCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhh
Q 040297 378 LEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWI 457 (773)
Q Consensus 378 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 457 (773)
.....+.............|... .......++.++.+++++|.+++..+ +..+++|++|++++|++++ + ..+
T Consensus 166 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l 237 (384)
T d2omza2 166 ---TDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTL 237 (384)
T ss_dssp ---CCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGG
T ss_pred ---chhhhhccccccccccccccccc-cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chh
Confidence 11122333334444444444332 11222234566666666666666554 4557899999999999985 3 367
Q ss_pred hcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCC
Q 040297 458 NILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLP 537 (773)
Q Consensus 458 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (773)
..+++|+.|++++|.+++.. .+..+++|+.|++++|++++..+ +.
T Consensus 238 ~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~------------------------------- 282 (384)
T d2omza2 238 ASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LA------------------------------- 282 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GT-------------------------------
T ss_pred hcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCc--cc-------------------------------
Confidence 88999999999999998644 48889999999999999875422 11
Q ss_pred CCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccC
Q 040297 538 TQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQI 617 (773)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 617 (773)
.++.++.+++++|.+++ +..+..+++++.|++++|++++..| +..+++|
T Consensus 283 ---------------------------~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L 331 (384)
T d2omza2 283 ---------------------------GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 331 (384)
T ss_dssp ---------------------------TCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred ---------------------------ccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCC
Confidence 13477889999999985 3458889999999999999997543 8899999
Q ss_pred CeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCC
Q 040297 618 ESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGN 673 (773)
Q Consensus 618 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~N 673 (773)
++|++++|++++ +| .+..+++|++|++++|++++.+| +..++.|+.+++++|
T Consensus 332 ~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 332 QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 999999999985 44 68999999999999999998876 678999999999887
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=3e-24 Score=220.93 Aligned_cols=244 Identities=20% Similarity=0.239 Sum_probs=149.8
Q ss_pred CCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEcc
Q 040297 319 NLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLS 398 (773)
Q Consensus 319 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 398 (773)
..+.++-++++++ .+|..+. +++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|+.|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 3455666666666 4555543 567777777777775555567777777777777777776667777777777777777
Q ss_pred CCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCcccc--ccchhhhcCCCCcEEEccCcccccc
Q 040297 399 NNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHG--SIPNWINILPQLSSLLLGNNYIEGE 476 (773)
Q Consensus 399 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~ 476 (773)
+|+++...... ...++.|++.+|.+.+..+..+.....+..++...|.... ..+..+..+++|+.+++++|.+..
T Consensus 88 ~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~- 164 (305)
T d1xkua_ 88 KNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 164 (305)
T ss_dssp SSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-
Confidence 77776443322 3466777777777777777777777777777777765432 234455666666777776666652
Q ss_pred CcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecC
Q 040297 477 IPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKN 556 (773)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (773)
+|.. .+++|+.|++++|..++..+..+..
T Consensus 165 l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~------------------------------------------------- 193 (305)
T d1xkua_ 165 IPQG--LPPSLTELHLDGNKITKVDAASLKG------------------------------------------------- 193 (305)
T ss_dssp CCSS--CCTTCSEEECTTSCCCEECTGGGTT-------------------------------------------------
T ss_pred cCcc--cCCccCEEECCCCcCCCCChhHhhc-------------------------------------------------
Confidence 3322 2455666666666555444433322
Q ss_pred ccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcc
Q 040297 557 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 629 (773)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 629 (773)
++.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|+.|.++++|+.|+|++|+|+.
T Consensus 194 ---------~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~ 256 (305)
T d1xkua_ 194 ---------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256 (305)
T ss_dssp ---------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred ---------cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence 124555556666655555555555566666666666655 445555556666666666665553
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=6.2e-24 Score=218.55 Aligned_cols=223 Identities=23% Similarity=0.287 Sum_probs=148.9
Q ss_pred CCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeC
Q 040297 270 MLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYL 349 (773)
Q Consensus 270 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 349 (773)
++++|+|++|+++ .+|...+..+++|++|++++|.+....+..|.++++|++|++++|+++ .+|..+ ...++.|++
T Consensus 32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~ 107 (305)
T d1xkua_ 32 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRV 107 (305)
T ss_dssp TCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEEC
T ss_pred CCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhhc
Confidence 4445555555544 444433344455555555555555444555555666666666666655 233322 245666666
Q ss_pred cCCcCCCCcchhhcCCCCCcEEEcccCcCC--CCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccc
Q 040297 350 SDNHLSGRIPRWLGNLSALEDIRMSNNNLE--GPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEG 427 (773)
Q Consensus 350 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 427 (773)
..|.+.+..+..+.....+..++...|... ...+..+..+++|+.+++++|.+...... .+++++.|++++|....
T Consensus 108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~ 185 (305)
T d1xkua_ 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITK 185 (305)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCE
T ss_pred cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCC
Confidence 666666555555666666666666665432 23344566777888888888877643222 25678888888888888
Q ss_pred cchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCC
Q 040297 428 QLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSG 499 (773)
Q Consensus 428 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 499 (773)
..+..+.+++.+++|++++|.+.+..+.++..+++|++|+|++|+++ .+|.++..+++|++|++++|+|+.
T Consensus 186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~ 256 (305)
T d1xkua_ 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256 (305)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence 88888888888999999999888777888888889999999999887 567788888888888888888874
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.1e-24 Score=219.43 Aligned_cols=229 Identities=19% Similarity=0.205 Sum_probs=184.4
Q ss_pred EEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEcc-Ccc
Q 040297 394 ILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLG-NNY 472 (773)
Q Consensus 394 ~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~ 472 (773)
.++.+++.++. +|..+ ++.+++|++++|+|+...+..|.++++|++|++++|++....+..+..++.++.+... .+.
T Consensus 15 ~v~c~~~~L~~-iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 15 TTSCPQQGLQA-VPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EEECCSSCCSS-CCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCCCCCCc-cCCCC-CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 34555555553 33322 3567788888888887777788888889999999988887777777778888888764 566
Q ss_pred ccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEE
Q 040297 473 IEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQF 552 (773)
Q Consensus 473 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (773)
++...+..+.++++|++|++++|.+.+..+..+..
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--------------------------------------------- 127 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--------------------------------------------- 127 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------------------------------------------
T ss_pred cccccchhhcccccCCEEecCCcccccccccccch---------------------------------------------
Confidence 76666778888999999999998876443332221
Q ss_pred EecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCC
Q 040297 553 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 632 (773)
Q Consensus 553 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 632 (773)
.++|+.+++++|++++..+..|..+++|+.|++++|++++..|..|.++++|+.+++++|++++..|
T Consensus 128 -------------~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~ 194 (284)
T d1ozna_ 128 -------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194 (284)
T ss_dssp -------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred -------------hcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccCh
Confidence 3478889999999987667788888999999999999998888899999999999999999999889
Q ss_pred cccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 633 SQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 633 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
..|..+++|++|++++|.+.+..|..++.+..++.++++||||.|+|+..
T Consensus 195 ~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~ 244 (284)
T d1ozna_ 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (284)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred hHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence 99999999999999999999888888888888999999999999998753
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.3e-23 Score=213.63 Aligned_cols=224 Identities=21% Similarity=0.169 Sum_probs=162.9
Q ss_pred EEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCc-CC
Q 040297 274 LDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLS-DN 352 (773)
Q Consensus 274 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~-~n 352 (773)
++.++++++ ++|..+ ...+++|+|++|+++.+.+..|.++++|++|++++|++....+..+..+..++.+... .+
T Consensus 16 v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp EECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 344555555 555543 2346666666666666655666677777777777777776666666666677766553 45
Q ss_pred cCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCC-CCceeEEECCCccccccchh
Q 040297 353 HLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFS-PAFIEQVHLSKNKIEGQLES 431 (773)
Q Consensus 353 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~ 431 (773)
.++...+..|.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..+. .+.|+.|++++|.+++..+.
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~ 171 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence 55555566777777777777777777666666666777777777777777766666554 56777778888777777778
Q ss_pred hhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcC
Q 040297 432 IIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYI 501 (773)
Q Consensus 432 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 501 (773)
+|.++++|+.+++++|++++..|.+|..+++|++|++++|++.+..+..+..+++|++|++++|++.+..
T Consensus 172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C 241 (284)
T d1ozna_ 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence 8888888888888888888878888888888888888888888877788888888888888888887543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.5e-23 Score=208.92 Aligned_cols=182 Identities=24% Similarity=0.248 Sum_probs=125.2
Q ss_pred CeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCC
Q 040297 438 YLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEE 517 (773)
Q Consensus 438 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~ 517 (773)
++++|+|++|+|++..+..|..+++|++|+|++|+++. ++ .+..+++|+.|++++|++++. +..+.
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~----------- 97 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQSL-PLLGQ----------- 97 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSSC-CCCTT-----------
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccccc-ccccc-----------
Confidence 45555555555554444455555556666666665552 22 245566666666666666532 21111
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEe
Q 040297 518 GPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 597 (773)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 597 (773)
.++.|+.|++++|.+.+..+..+..+.++++|+
T Consensus 98 -----------------------------------------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 130 (266)
T d1p9ag_ 98 -----------------------------------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (266)
T ss_dssp -----------------------------------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred -----------------------------------------------cccccccccccccccceeecccccccccccccc
Confidence 134667777777777766666677778888888
Q ss_pred CCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCC
Q 040297 598 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 598 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC 677 (773)
+++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+..++.++++||||.|
T Consensus 131 l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence 8888888777777778888888888888888777777888888888888888887 566666677888888999999999
Q ss_pred CCCC
Q 040297 678 GWPL 681 (773)
Q Consensus 678 ~~~l 681 (773)
+|.+
T Consensus 210 dC~~ 213 (266)
T d1p9ag_ 210 NCEI 213 (266)
T ss_dssp SGGG
T ss_pred Ccch
Confidence 9864
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.2e-21 Score=194.57 Aligned_cols=201 Identities=21% Similarity=0.224 Sum_probs=166.2
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEE
Q 040297 388 QLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLL 467 (773)
Q Consensus 388 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 467 (773)
+...+.+++.+++.++.. |..+ +++++.|+|++|++++..+..|.++++|++|+|++|+++. ++ .++.+++|++|+
T Consensus 8 ~~~~~~~v~C~~~~L~~i-P~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 83 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD 83 (266)
T ss_dssp CSTTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred ccCCCeEEEccCCCCCee-CcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence 345566677777777643 4322 3578888888888888888889999999999999999984 44 356789999999
Q ss_pred ccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCc
Q 040297 468 LGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKE 547 (773)
Q Consensus 468 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (773)
+++|++++ .+..+..+++|+.|++++|.+.+..+..+.
T Consensus 84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------------------------------------- 121 (266)
T d1p9ag_ 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR----------------------------------------- 121 (266)
T ss_dssp CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTT-----------------------------------------
T ss_pred cccccccc-cccccccccccccccccccccceeeccccc-----------------------------------------
Confidence 99999984 567888999999999999988754433322
Q ss_pred ceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccC
Q 040297 548 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 627 (773)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 627 (773)
.+.+++.|++++|.+++..+..+..+++|+.|++++|++++..++.|+.+++|++|||++|+|
T Consensus 122 -----------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L 184 (266)
T d1p9ag_ 122 -----------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (266)
T ss_dssp -----------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred -----------------cccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCC
Confidence 135888999999999977778888899999999999999988888999999999999999999
Q ss_pred cccCCcccccCCCCCEEEccCCccc
Q 040297 628 HGKIPSQLTVLNTLAVFKVAYNNLS 652 (773)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~ls~N~l~ 652 (773)
+ .+|+.+..+++|+.|++++|++.
T Consensus 185 ~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 185 Y-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp C-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred c-ccChhHCCCCCCCEEEecCCCCC
Confidence 9 78888889999999999999875
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=7.7e-18 Score=176.29 Aligned_cols=54 Identities=31% Similarity=0.506 Sum_probs=26.2
Q ss_pred CCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCccc
Q 040297 591 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLS 652 (773)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 652 (773)
++|++|+|++|+|+ .+|.. +++|+.|+|++|+++ .+|+. +++|+.|++++|+++
T Consensus 284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~ 337 (353)
T d1jl5a_ 284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR 337 (353)
T ss_dssp TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence 44555555555555 34432 344555555555554 33322 234555555555554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=6.3e-21 Score=207.99 Aligned_cols=381 Identities=18% Similarity=0.119 Sum_probs=192.9
Q ss_pred CcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCc----cCchhhhCCCCCcEEEeecccCCCccchhHhhc----
Q 040297 221 KLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNG----SIPSSFADMKMLERLDISYNQLTGEIPERMATG---- 292 (773)
Q Consensus 221 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~---- 292 (773)
+|++||+++|++++..-..+...++++++|+|++|.++. .+...+..+++|++|||++|.++..-...+...
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 355566666655532222233335566666666666552 223345566666666666666542111122211
Q ss_pred CCCccEEEcccCcCCCc----CcccccCCCCCcEEEcccccCCccccccc----c-CCCCCCeeeCcCCcCCCC----cc
Q 040297 293 CFLLEILALSNNNLQGH----IFSKKFNLTNLMRLQLDGNNFTGEISDSL----S-NCRLLAGLYLSDNHLSGR----IP 359 (773)
Q Consensus 293 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~-~l~~L~~L~L~~n~l~~~----~~ 359 (773)
..+|++|++++|.++.. ++..+..+++|++|++++|.+.......+ . ..............+... ..
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 23566666666666532 22334456666666666666543211111 1 111222233322222111 01
Q ss_pred hhhcCCCCCcEEEcccCcCCCCcc----ccc-cCCCCCcEEEccCCCCCCCCCC-----CCCCCceeEEECCCcccccc-
Q 040297 360 RWLGNLSALEDIRMSNNNLEGPIP----IEF-CQLDYLTILDLSNNAIFGTLPS-----CFSPAFIEQVHLSKNKIEGQ- 428 (773)
Q Consensus 360 ~~~~~l~~L~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~L~~L~l~~n~l~~~- 428 (773)
..+.....++.++++++....... ..+ ........+++..+.+...... ....+.++.+++.+|.+...
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 122334566666666554431110 011 1223445566655544321100 01145566666666654321
Q ss_pred ----chhhhcCCCCeeEEeCCCCccccc----cchhhhcCCCCcEEEccCccccccCcccc-----cCCCCCCEEEccCC
Q 040297 429 ----LESIIHDSPYLVTLDLSYNRFHGS----IPNWINILPQLSSLLLGNNYIEGEIPVQL-----CELKEVRLIDLSHN 495 (773)
Q Consensus 429 ----~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N 495 (773)
..........++.+++++|.+... ....+...+.++.+++++|.++......+ .....|+.+++++|
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~ 322 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 322 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence 223344456777777777766532 22334556777777777777753322111 23456777777777
Q ss_pred cCCCcCcchhhccCcCccccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecc
Q 040297 496 NLSGYIPACLVYTSLGEDYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLS 575 (773)
Q Consensus 496 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 575 (773)
.++......+.... ...++|++|||+
T Consensus 323 ~l~~~~~~~l~~~~------------------------------------------------------~~~~~L~~L~Ls 348 (460)
T d1z7xw1 323 SFTAACCSHFSSVL------------------------------------------------------AQNRFLLELQIS 348 (460)
T ss_dssp CCBGGGHHHHHHHH------------------------------------------------------HHCSSCCEEECC
T ss_pred chhhhhhhhccccc------------------------------------------------------ccccchhhhhee
Confidence 76644333332211 112367788888
Q ss_pred cCcCccc----CChhhh-ccCCCCeEeCCCCcCCCC----CccccccCccCCeeeCccccCcccCCccc----c-cCCCC
Q 040297 576 CNKLTGE----IPTQIG-YLTRIHALNLSHNNLTGT----IPTTFSNLKQIESLDLSYNLLHGKIPSQL----T-VLNTL 641 (773)
Q Consensus 576 ~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~~p~~l----~-~l~~L 641 (773)
+|++++. ++..+. ..+.|++|+|++|.|+.. +++.+...++|++|||++|+++......+ . ....|
T Consensus 349 ~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L 428 (460)
T d1z7xw1 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428 (460)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCC
T ss_pred eecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCcc
Confidence 8887643 223332 355688888888887642 34456667788888888888765333222 2 23367
Q ss_pred CEEEccCCcccccC
Q 040297 642 AVFKVAYNNLSGKI 655 (773)
Q Consensus 642 ~~L~ls~N~l~~~~ 655 (773)
+.|++.+|.+....
T Consensus 429 ~~l~l~~~~~~~~~ 442 (460)
T d1z7xw1 429 EQLVLYDIYWSEEM 442 (460)
T ss_dssp CEEECTTCCCCHHH
T ss_pred CEEECCCCCCCHHH
Confidence 88888887776443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.80 E-value=8.7e-18 Score=175.89 Aligned_cols=69 Identities=26% Similarity=0.469 Sum_probs=54.9
Q ss_pred cccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEE
Q 040297 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFK 645 (773)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 645 (773)
+++|++|+|++|+++ .+|.. +++|+.|+|++|+|+ .+|+. +++|++|+|++|+++ .+|+.. .+|+.|.
T Consensus 283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~ 350 (353)
T d1jl5a_ 283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLR 350 (353)
T ss_dssp CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEE
T ss_pred CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeE
Confidence 468999999999999 67754 568999999999999 67754 568999999999998 567543 3566665
Q ss_pred c
Q 040297 646 V 646 (773)
Q Consensus 646 l 646 (773)
+
T Consensus 351 ~ 351 (353)
T d1jl5a_ 351 M 351 (353)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.5e-20 Score=203.14 Aligned_cols=397 Identities=16% Similarity=0.108 Sum_probs=193.5
Q ss_pred CCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccC----CccCccCCCCcCEEEccCCcCccCCchhHhhC----
Q 040297 172 DLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGS----FRMPIHSYQKLAILDVSKNFFQGHIPVEIGTY---- 243 (773)
Q Consensus 172 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~---- 243 (773)
+|++||++.+++++..-..++..++++++|+|++|.++.. +...+..+++|++|||++|.++..-...+...
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 3566666666666543333345566677777777766421 22334566667777777776642111122211
Q ss_pred CCCCcEEEccCCccCcc----CchhhhCCCCCcEEEeecccCCCccchhHhhc----CCCccEEEcccCcCCCcC----c
Q 040297 244 LPGLMDLNLSRNAFNGS----IPSSFADMKMLERLDISYNQLTGEIPERMATG----CFLLEILALSNNNLQGHI----F 311 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~----~ 311 (773)
..+|++|++++|+++.. ++..+..+++|++|++++|.+.+.-...+... .............+.... .
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 23677777777776543 34456667777777777777652222222111 111222333222222110 0
Q ss_pred ccccCCCCCcEEEcccccCCccc----cccc-cCCCCCCeeeCcCCcCCCCc----chhhcCCCCCcEEEcccCcCCCC-
Q 040297 312 SKKFNLTNLMRLQLDGNNFTGEI----SDSL-SNCRLLAGLYLSDNHLSGRI----PRWLGNLSALEDIRMSNNNLEGP- 381 (773)
Q Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~~----~~~l-~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~- 381 (773)
..+.....++.++++++.+.... ...+ ........+++..+.+.... ...+...+.++.+++.+|.+...
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 11122344455555444332110 0000 11122334444444332111 11122334444444444433211
Q ss_pred ----ccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCcccccc----chhhhcCCCCeeEEeCCCCcccccc
Q 040297 382 ----IPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQ----LESIIHDSPYLVTLDLSYNRFHGSI 453 (773)
Q Consensus 382 ----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~ 453 (773)
......... .++.+++++|.+... ....+...+.++.+++++|.+++..
T Consensus 243 ~~~~~~~~~~~~~-----------------------~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~ 299 (460)
T d1z7xw1 243 MAELCPGLLHPSS-----------------------RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299 (460)
T ss_dssp HHHHHHHHTSTTC-----------------------CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred cchhhcccccccc-----------------------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 011112233 444555555444322 1223344566777777777665432
Q ss_pred chhh-----hcCCCCcEEEccCccccccCcc----cccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCCCCCccc
Q 040297 454 PNWI-----NILPQLSSLLLGNNYIEGEIPV----QLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEGPPTSIW 524 (773)
Q Consensus 454 ~~~~-----~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 524 (773)
...+ .....|+.+++++|.++..... .+...++|++|+|++|++++.....+...-
T Consensus 300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l--------------- 364 (460)
T d1z7xw1 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL--------------- 364 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH---------------
T ss_pred cchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhh---------------
Confidence 2221 1235677777777776644322 234456778888888877543222221100
Q ss_pred cccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCccc----CChhhhccCCCCeEeCCC
Q 040297 525 CDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE----IPTQIGYLTRIHALNLSH 600 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~ 600 (773)
....+.|++|+|++|.+++. +++.+..+++|++|+|++
T Consensus 365 --------------------------------------~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 406 (460)
T d1z7xw1 365 --------------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 406 (460)
T ss_dssp --------------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred --------------------------------------hcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCC
Confidence 00123577888888888742 344566678888888888
Q ss_pred CcCCCCCcccc----c-cCccCCeeeCccccCcccCCccc----ccCCCCCEE
Q 040297 601 NNLTGTIPTTF----S-NLKQIESLDLSYNLLHGKIPSQL----TVLNTLAVF 644 (773)
Q Consensus 601 N~l~~~~p~~~----~-~l~~L~~LdLs~N~l~~~~p~~l----~~l~~L~~L 644 (773)
|+|+......| . +.+.|+.|++++|.+....+..+ ...++|+++
T Consensus 407 N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 88875333222 2 33478888888888875544333 344555544
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=5.5e-18 Score=160.19 Aligned_cols=179 Identities=20% Similarity=0.238 Sum_probs=125.8
Q ss_pred eEEeCCCCccccccchhhhcCCCCcEEEccCccccccC-cccccCCCCCCEEEccCCcCCCcCcchhhccCcCccccCCC
Q 040297 440 VTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEI-PVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGEDYHEEG 518 (773)
Q Consensus 440 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~ 518 (773)
++++.++++++ .+|..+. +++++|+|++|+|++.+ +..|.++++|+.|++++|++.+..+..+..
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~----------- 76 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-----------
Confidence 46777777777 4565432 57788888888886533 556677888888888888887665554433
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCCCCeEeC
Q 040297 519 PPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 598 (773)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 598 (773)
+++|++|+|++|++++..|..|.++++|++|+|
T Consensus 77 -----------------------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L 109 (192)
T d1w8aa_ 77 -----------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp -----------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred -----------------------------------------------ccccceeeeccccccccCHHHHhCCCccccccc
Confidence 347788888888888777778888888888888
Q ss_pred CCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCCcccccCCCCCcccccCCcCcccCCCCCCC
Q 040297 599 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 678 (773)
Q Consensus 599 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~ 678 (773)
++|+|++..|+.|..+++|++|+|++|++....+... -...++.+.+..|.++...|.. +..++..++..|.+.|.
T Consensus 110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~ 185 (192)
T d1w8aa_ 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCC
T ss_pred CCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCC
Confidence 8888888888888888888888888888875443221 1123555666777777666653 44556667888888887
Q ss_pred CCCCC
Q 040297 679 WPLSK 683 (773)
Q Consensus 679 ~~l~~ 683 (773)
++-..
T Consensus 186 ~~~~~ 190 (192)
T d1w8aa_ 186 SENSE 190 (192)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 65443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.2e-17 Score=164.73 Aligned_cols=218 Identities=15% Similarity=0.115 Sum_probs=142.6
Q ss_pred CEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEcc
Q 040297 174 KNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS 253 (773)
Q Consensus 174 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 253 (773)
+.++.++.+++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|.+...++...+..++.++++.+.
T Consensus 11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 56677777776 667554 25788888888888776666788888888888888888766666666667888888876
Q ss_pred C-CccCccCchhhhCCCCCcEEEeecccCCCccch-hHhhcCCCccEEEcccCcCCCcCcccccCCC-CCcEEEcccccC
Q 040297 254 R-NAFNGSIPSSFADMKMLERLDISYNQLTGEIPE-RMATGCFLLEILALSNNNLQGHIFSKKFNLT-NLMRLQLDGNNF 330 (773)
Q Consensus 254 ~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 330 (773)
. |.+....+..|.++++|+++++++|.+. ..+. .....+..+..+..+++.+....+..+..++ .++.|++++|++
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l 165 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 165 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 4 5677777778888888888888888887 4433 2223344555555666666655555555443 566777777777
Q ss_pred CccccccccCCCCCCe-eeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEc
Q 040297 331 TGEISDSLSNCRLLAG-LYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDL 397 (773)
Q Consensus 331 ~~~~~~~l~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 397 (773)
+...+..+. ..+++. +++++|+++...+..|.++++|++|++++|+++...+..|.++++|+.+++
T Consensus 166 ~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 166 QEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232 (242)
T ss_dssp CEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred ccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence 644443333 333333 345666666444445666777777777777766444444555555554444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.2e-17 Score=162.74 Aligned_cols=220 Identities=19% Similarity=0.155 Sum_probs=124.4
Q ss_pred CEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcc
Q 040297 223 AILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALS 302 (773)
Q Consensus 223 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 302 (773)
++++.++..++ .+|..++ +++++|++++|+++...+.+|.++++|++|++++|.+...++...+.+++.++++.+.
T Consensus 11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 45666666665 5665432 3566777777766655555666667777777776666544554444445555555543
Q ss_pred c-CcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCC
Q 040297 303 N-NNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGP 381 (773)
Q Consensus 303 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 381 (773)
. |.+....+..|.++++|+++++++|++....+ +. .+..+..+..+...++.+...
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~---------------------~~~~l~~l~~~~~~n~~l~~i 143 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VH---------------------KIHSLQKVLLDIQDNINIHTI 143 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CT---------------------TTCBSSCEEEEEESCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhccccc--cc---------------------ccccccccccccccccccccc
Confidence 2 34444444444455555555555554432111 11 112233333334444444433
Q ss_pred ccccccCC-CCCcEEEccCCCCCCCCCCCCCCCceeEE-ECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhc
Q 040297 382 IPIEFCQL-DYLTILDLSNNAIFGTLPSCFSPAFIEQV-HLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINI 459 (773)
Q Consensus 382 ~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 459 (773)
.+..+.++ ..++.+++++|+++...+..+....+.++ ++.+|.++...+..|.++++|++|++++|+++...+..|..
T Consensus 144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 223 (242)
T d1xwdc1 144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 223 (242)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred cccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence 33444443 35666777777776555555555555544 45667777776777888888888888888888554555666
Q ss_pred CCCCcEEEcc
Q 040297 460 LPQLSSLLLG 469 (773)
Q Consensus 460 l~~L~~L~L~ 469 (773)
+++|+.+++.
T Consensus 224 l~~L~~l~~~ 233 (242)
T d1xwdc1 224 LKKLRARSTY 233 (242)
T ss_dssp CCEEESSSEE
T ss_pred CcccccCcCC
Confidence 6666665543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=2.1e-16 Score=153.71 Aligned_cols=203 Identities=18% Similarity=0.228 Sum_probs=107.5
Q ss_pred EEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEccccc
Q 040297 250 LNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNN 329 (773)
Q Consensus 250 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 329 (773)
++++.+++++.. .++.+.+|++|++.+|.++ .++ .+ ..+++|++|++++|.+++..+ +..+++++++++++|.
T Consensus 24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~ 96 (227)
T d1h6ua2 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96 (227)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hH-hcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence 344444444322 3344555555555555555 342 22 235555555555555544322 4444555555555554
Q ss_pred CCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCC
Q 040297 330 FTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSC 409 (773)
Q Consensus 330 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 409 (773)
++. + ..+.++++|+.++++++...+. ..+...+.+..+.++.+.+.... ..
T Consensus 97 ~~~-i-~~l~~l~~L~~l~l~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~-~~ 147 (227)
T d1h6ua2 97 LKN-V-SAIAGLQSIKTLDLTSTQITDV--------------------------TPLAGLSNLQVLYLDLNQITNIS-PL 147 (227)
T ss_dssp CSC-C-GGGTTCTTCCEEECTTSCCCCC--------------------------GGGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred ccc-c-cccccccccccccccccccccc--------------------------chhccccchhhhhchhhhhchhh-hh
Confidence 442 1 1244444444444444444322 12333444455555444443221 12
Q ss_pred CCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCE
Q 040297 410 FSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRL 489 (773)
Q Consensus 410 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 489 (773)
..+++|+.|++++|.+.... .+.++++|++|++++|++++. + .++.+++|++|++++|++++. + .+.++++|+.
T Consensus 148 ~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~ 221 (227)
T d1h6ua2 148 AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFI 221 (227)
T ss_dssp GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCE
T ss_pred ccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCE
Confidence 22445555555555554433 256777888888888887743 3 367788888888888888743 3 3778888888
Q ss_pred EEccC
Q 040297 490 IDLSH 494 (773)
Q Consensus 490 L~L~~ 494 (773)
|++++
T Consensus 222 L~lsn 226 (227)
T d1h6ua2 222 VTLTN 226 (227)
T ss_dssp EEEEE
T ss_pred EEeeC
Confidence 88763
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=3.1e-16 Score=152.50 Aligned_cols=186 Identities=22% Similarity=0.287 Sum_probs=91.5
Q ss_pred CCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEE
Q 040297 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 274 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 274 (773)
+.+|++|++.+|.++.. ..+..+++|++|++++|.+++ ++. +..+++++++++++|.++. + ..+..+++|+.+
T Consensus 40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~-~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l 112 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL 112 (227)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeec-ccc--ccccccccccccccccccc-c-cccccccccccc
Confidence 44455555555554432 234445555555555555542 211 2224555555555555442 2 234555555555
Q ss_pred EeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcC
Q 040297 275 DISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354 (773)
Q Consensus 275 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 354 (773)
+++++... .++. +...+.++.+.++.+.+.... .+..+++|++|++++|.+.+. ..++++++|+.|++++|++
T Consensus 113 ~l~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l 185 (227)
T d1h6ua2 113 DLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI 185 (227)
T ss_dssp ECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred cccccccc-ccch--hccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecccCCCcc
Confidence 55555544 2221 122445555555555544322 234455566666655555432 1255556666666666665
Q ss_pred CCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEcc
Q 040297 355 SGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLS 398 (773)
Q Consensus 355 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 398 (773)
++. + .++++++|++|++++|++++.. .+.++++|+.|+++
T Consensus 186 ~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 186 SDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225 (227)
T ss_dssp CCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred CCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence 532 2 2555566666666666655332 25556666666654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.69 E-value=4.5e-17 Score=153.80 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=108.0
Q ss_pred ccccEEecccCcCcccC-ChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEE
Q 040297 567 TSMSGIDLSCNKLTGEI-PTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFK 645 (773)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 645 (773)
+++++|+|++|+|++.+ +..|+.+++|+.|+|++|.+++..++.|..+++|+.|+|++|++++..|..|.++++|+.|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 47899999999998644 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCCcccccCCcCcccCCCCCCCCCC
Q 040297 646 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPL 681 (773)
Q Consensus 646 ls~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l 681 (773)
|++|+|++..|..|..+..++.+++++||+.|+|..
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~ 144 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred cCCccccccCHHHhcCCcccccccccccccccccch
Confidence 999999999999999999999999999999999864
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=1.4e-15 Score=145.51 Aligned_cols=146 Identities=27% Similarity=0.388 Sum_probs=93.7
Q ss_pred hcCCCCeeEEeCCCCccccccchhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEccCCcCCCcCcchhhccCcCc
Q 040297 433 IHDSPYLVTLDLSYNRFHGSIPNWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLSHNNLSGYIPACLVYTSLGE 512 (773)
Q Consensus 433 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 512 (773)
+..+++|++|++++|++++.. .++.+++|++|++++|++++ ++ .+..+++|+.|++++|.+.. ++ .+.
T Consensus 64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~~-~l~------ 131 (210)
T d1h6ta2 64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-IN-GLV------ 131 (210)
T ss_dssp GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-CG-GGG------
T ss_pred HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccc-cc-ccc------
Confidence 445566666666666666432 24566677777777777663 33 46667777777777776542 11 111
Q ss_pred cccCCCCCCccccccccccCCCCCCCCCCCCCCCcceEEEEecCccccccccccccccEEecccCcCcccCChhhhccCC
Q 040297 513 DYHEEGPPTSIWCDRASVYGSPCLPTQSGPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTR 592 (773)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 592 (773)
.++.++.+++++|.+++ +..+..+++
T Consensus 132 ----------------------------------------------------~l~~l~~l~~~~n~l~~--~~~~~~l~~ 157 (210)
T d1h6ta2 132 ----------------------------------------------------HLPQLESLYLGNNKITD--ITVLSRLTK 157 (210)
T ss_dssp ----------------------------------------------------GCTTCCEEECCSSCCCC--CGGGGGCTT
T ss_pred ----------------------------------------------------ccccccccccccccccc--ccccccccc
Confidence 13466777777777763 334667778
Q ss_pred CCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccC
Q 040297 593 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAY 648 (773)
Q Consensus 593 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~ 648 (773)
|+++++++|++++. + .++++++|+.|+|++|+++. +| .+..+++|++|++++
T Consensus 158 L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 158 LDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred cccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 88888888888743 3 27778888888888888764 44 477788888887763
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=2.4e-15 Score=143.87 Aligned_cols=162 Identities=25% Similarity=0.341 Sum_probs=77.1
Q ss_pred CccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcc
Q 040297 295 LLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMS 374 (773)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 374 (773)
+|++|++++|.++... .+..+++|++|++++|++++.. .++.+++|+.|++++|++++ ++ .+..+++|+.|+++
T Consensus 47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (210)
T ss_dssp TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence 4455555555444322 2344555555555555555322 23445555555555555543 22 24455555555555
Q ss_pred cCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccccccc
Q 040297 375 NNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFHGSIP 454 (773)
Q Consensus 375 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 454 (773)
+|.+.. ...+..++.++.+++++|.+++. ..+..+++|+++++++|++++. +
T Consensus 121 ~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~-------------------------~~~~~l~~L~~l~l~~n~l~~i-~ 172 (210)
T d1h6ta2 121 HNGISD--INGLVHLPQLESLYLGNNKITDI-------------------------TVLSRLTKLDTLSLEDNQISDI-V 172 (210)
T ss_dssp TSCCCC--CGGGGGCTTCCEEECCSSCCCCC-------------------------GGGGGCTTCSEEECCSSCCCCC-G
T ss_pred cccccc--ccccccccccccccccccccccc-------------------------cccccccccccccccccccccc-c
Confidence 555432 12344455555555555544321 1123344555555555555432 1
Q ss_pred hhhhcCCCCcEEEccCccccccCcccccCCCCCCEEEcc
Q 040297 455 NWINILPQLSSLLLGNNYIEGEIPVQLCELKEVRLIDLS 493 (773)
Q Consensus 455 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 493 (773)
.+..+++|++|++++|++++ ++ .+.++++|++|+|+
T Consensus 173 -~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 173 -PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp -GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred -cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 14455555555555555542 22 35555555555554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=4.5e-15 Score=140.72 Aligned_cols=146 Identities=21% Similarity=0.268 Sum_probs=60.8
Q ss_pred CCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEc
Q 040297 294 FLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRM 373 (773)
Q Consensus 294 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 373 (773)
.++++|++++|.+... +.+..+++|++|++++|++++..+ ++++++|++|++++|.+... + .+.++++|+.|++
T Consensus 40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEEC
T ss_pred cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccccc
Confidence 3344444444444332 123344455555555554443221 44455555555555544422 1 2444555555555
Q ss_pred ccCcCCCCccccccCCCCCcEEEccCCCCCCCCCCCCCCCceeEEECCCccccccchhhhcCCCCeeEEeCCCCccc
Q 040297 374 SNNNLEGPIPIEFCQLDYLTILDLSNNAIFGTLPSCFSPAFIEQVHLSKNKIEGQLESIIHDSPYLVTLDLSYNRFH 450 (773)
Q Consensus 374 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 450 (773)
++|..... ..+..+++|+.|++++|.+.. ++....+++++.|++.+|++++.. .+.++++|++|++++|+++
T Consensus 114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 114 FNNQITDI--DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS 185 (199)
T ss_dssp CSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred cccccccc--cccchhhhhHHhhhhhhhhcc-cccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence 55444322 123444555555555544431 122222333333333333333221 1334444444444444444
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.62 E-value=5.6e-15 Score=140.03 Aligned_cols=147 Identities=25% Similarity=0.276 Sum_probs=63.8
Q ss_pred CCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEE
Q 040297 195 NTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 274 (773)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 274 (773)
++++++|++++|.+... ..+..+++|++|++++|++++ ++. +..+++|++|++++|.+.. ++ .+.+++.|+.|
T Consensus 39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~-~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L 111 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL 111 (199)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccC-ccc--ccCCccccccccccccccc-cc-ccccccccccc
Confidence 45556666666555432 124445555555555555542 221 2224455555555554442 21 24455555555
Q ss_pred EeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcC
Q 040297 275 DISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHL 354 (773)
Q Consensus 275 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 354 (773)
++++|... .++. +..+++|+.|++++|++... +.+..+++|++|++.+|++++. + .++++++|+.|++++|++
T Consensus 112 ~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i 184 (199)
T d2omxa2 112 TLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKV 184 (199)
T ss_dssp ECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred cccccccc-cccc--cchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCC
Confidence 55555444 2221 12244444444444444321 1233444444444444444422 1 234444444444444444
Q ss_pred C
Q 040297 355 S 355 (773)
Q Consensus 355 ~ 355 (773)
+
T Consensus 185 ~ 185 (199)
T d2omxa2 185 S 185 (199)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.6e-15 Score=152.41 Aligned_cols=183 Identities=20% Similarity=0.181 Sum_probs=111.0
Q ss_pred CCCCCEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCC-cCccCCchhHhhCCCCCc
Q 040297 170 QHDLKNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKN-FFQGHIPVEIGTYLPGLM 248 (773)
Q Consensus 170 ~~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~ 248 (773)
..+|++|+++++.+++.....++.++++|++|++++|.+.+..+..+..+++|++|++++| .++...-..+...+++|+
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~ 124 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence 3467777777777665544555677788888888887776665666667777888888775 344222223334467888
Q ss_pred EEEccCCc-cCcc-Cchhhh-CCCCCcEEEeecc--cCCCccchhHhhcCCCccEEEcccC-cCCCcCcccccCCCCCcE
Q 040297 249 DLNLSRNA-FNGS-IPSSFA-DMKMLERLDISYN--QLTGEIPERMATGCFLLEILALSNN-NLQGHIFSKKFNLTNLMR 322 (773)
Q Consensus 249 ~L~L~~n~-l~~~-~p~~~~-~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 322 (773)
+|++++|. ++.. ....+. .+++|+.|+++++ .+++.....+...+++|++|++++| .+++.....+..+++|++
T Consensus 125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~ 204 (284)
T d2astb2 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 204 (284)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence 88887753 3321 122232 3467777877764 3332222334445677777777765 355455555666677777
Q ss_pred EEcccc-cCCccccccccCCCCCCeeeCcCC
Q 040297 323 LQLDGN-NFTGEISDSLSNCRLLAGLYLSDN 352 (773)
Q Consensus 323 L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n 352 (773)
|++++| .+++.....++.+++|+.|+++++
T Consensus 205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 777664 455444445566666666666665
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.6e-15 Score=152.42 Aligned_cols=224 Identities=18% Similarity=0.185 Sum_probs=143.3
Q ss_pred CEEECCCCCCccccchhHhhcCCCCCEEEccCCcCccCCccCccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEcc
Q 040297 174 KNADLSHLNLSGNFPNWLVENNTNLETLLLANNSLFGSFRMPIHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLS 253 (773)
Q Consensus 174 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 253 (773)
+.+|++++.+.......++. ..+..+.++......... ......+|++||++++.++......++..+++|++|+++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~ 79 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence 35677776665433333322 245566666655433222 233456788999988887655455666778899999999
Q ss_pred CCccCccCchhhhCCCCCcEEEeecc-cCCCccchhHhhcCCCccEEEcccCc-CCCc-Ccccc-cCCCCCcEEEcccc-
Q 040297 254 RNAFNGSIPSSFADMKMLERLDISYN-QLTGEIPERMATGCFLLEILALSNNN-LQGH-IFSKK-FNLTNLMRLQLDGN- 328 (773)
Q Consensus 254 ~n~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~-~~l~~L~~L~L~~n- 328 (773)
+|.+++..+..++.+++|++|+++++ .+++..-..+..++++|++|+++++. ++.. ....+ ...++|+.|+++++
T Consensus 80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (284)
T d2astb2 80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159 (284)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence 99888777788888899999999885 45532223345568888888888863 3321 11112 23467888888764
Q ss_pred -cCCcc-ccccccCCCCCCeeeCcCC-cCCCCcchhhcCCCCCcEEEcccC-cCCCCccccccCCCCCcEEEccCC
Q 040297 329 -NFTGE-ISDSLSNCRLLAGLYLSDN-HLSGRIPRWLGNLSALEDIRMSNN-NLEGPIPIEFCQLDYLTILDLSNN 400 (773)
Q Consensus 329 -~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 400 (773)
.++.. +.....++++|++|++++| .+++.....+..+++|++|++++| .+++.....+.++++|+.|+++++
T Consensus 160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 23322 2223356777888888775 356556666777778888888775 455555555666777777777665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.1e-14 Score=127.44 Aligned_cols=113 Identities=16% Similarity=0.225 Sum_probs=99.2
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCC-cCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEc
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHN-NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKV 646 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 646 (773)
..+.++.+++.+. ..|..+..+++|++|++++| .|+...++.|.++++|+.|+|++|+|+...|..|..+++|++|+|
T Consensus 9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 4566889999888 67888999999999999876 599777889999999999999999999998999999999999999
Q ss_pred cCCcccccCCCCCcccccCCcCcccCCCCCCCCCCC
Q 040297 647 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGWPLS 682 (773)
Q Consensus 647 s~N~l~~~~p~~~~~~~~l~~~~l~~Np~lC~~~l~ 682 (773)
++|+++...+..+.. ..++.+++++|||.|+|.+.
T Consensus 88 s~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~~~ 122 (156)
T d2ifga3 88 SFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALR 122 (156)
T ss_dssp CSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGGGH
T ss_pred cCCCCcccChhhhcc-ccccccccCCCcccCCchHH
Confidence 999999777766544 46899999999999999653
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=9.2e-14 Score=126.01 Aligned_cols=128 Identities=20% Similarity=0.126 Sum_probs=76.0
Q ss_pred ccCCCCcCEEEccCCcCccCCchhHhhCCCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCC
Q 040297 216 IHSYQKLAILDVSKNFFQGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFL 295 (773)
Q Consensus 216 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 295 (773)
+.+..++++|+|++|+++ .++. ++..+++|+.|++++|.++.. +.|..+++|++|++++|+++ .++..++..+++
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~ 88 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 88 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence 344556666666666666 4543 333466777777777777633 24666777777777777776 566555555677
Q ss_pred ccEEEcccCcCCCcCc-ccccCCCCCcEEEcccccCCccc---cccccCCCCCCeee
Q 040297 296 LEILALSNNNLQGHIF-SKKFNLTNLMRLQLDGNNFTGEI---SDSLSNCRLLAGLY 348 (773)
Q Consensus 296 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~ 348 (773)
|++|++++|+++.... ..+..+++|++|++++|.++... +..+..+++|++||
T Consensus 89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 7777777776664321 34555666666666666654221 11344555555554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.42 E-value=1.8e-13 Score=141.90 Aligned_cols=216 Identities=19% Similarity=0.176 Sum_probs=98.0
Q ss_pred ChhhcCCCCCCEEECCCCCCccccchhH---hhcCCCCCEEEccCCcCccCC----------ccCccCCCCcCEEEccCC
Q 040297 164 PKFLYHQHDLKNADLSHLNLSGNFPNWL---VENNTNLETLLLANNSLFGSF----------RMPIHSYQKLAILDVSKN 230 (773)
Q Consensus 164 ~~~l~~~~~L~~L~L~~~~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~----------~~~~~~l~~L~~L~Ls~n 230 (773)
...+.+..+|+.|+|++|.+.......+ +...++|+.++++++...... ...+..+++|++|++++|
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 3445555666666666665543222221 234456666666655432111 112334455666666666
Q ss_pred cCccCCchhH---hhCCCCCcEEEccCCccCccCchh-------------hhCCCCCcEEEeecccCCCccchh---Hhh
Q 040297 231 FFQGHIPVEI---GTYLPGLMDLNLSRNAFNGSIPSS-------------FADMKMLERLDISYNQLTGEIPER---MAT 291 (773)
Q Consensus 231 ~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~-------------~~~l~~L~~L~Ls~n~l~~~~~~~---~~~ 291 (773)
.+...-...+ ....++|++|++++|.+....... ....+.|+.+++++|.+....... ...
T Consensus 104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~ 183 (344)
T d2ca6a1 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183 (344)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence 5543211111 112455666666665543211100 123455666666665554221111 112
Q ss_pred cCCCccEEEcccCcCCCc-----CcccccCCCCCcEEEcccccCCcc----ccccccCCCCCCeeeCcCCcCCCCcchh-
Q 040297 292 GCFLLEILALSNNNLQGH-----IFSKKFNLTNLMRLQLDGNNFTGE----ISDSLSNCRLLAGLYLSDNHLSGRIPRW- 361 (773)
Q Consensus 292 ~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~- 361 (773)
.+..|+.|++++|.+... ....+..+++|+.|++++|.++.. +...+..+++|++|++++|.+++.....
T Consensus 184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l 263 (344)
T d2ca6a1 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 263 (344)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence 345555555555555421 122334455566666665555321 2233445555666666666555322221
Q ss_pred ---hcC--CCCCcEEEcccCcCC
Q 040297 362 ---LGN--LSALEDIRMSNNNLE 379 (773)
Q Consensus 362 ---~~~--l~~L~~L~L~~n~l~ 379 (773)
+.. ...|++|++++|.+.
T Consensus 264 ~~~l~~~~~~~L~~L~ls~N~i~ 286 (344)
T d2ca6a1 264 VDAFSKLENIGLQTLRLQYNEIE 286 (344)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHhhhccCCCCCEEECCCCcCC
Confidence 111 234555555555544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.42 E-value=7.1e-14 Score=144.97 Aligned_cols=245 Identities=21% Similarity=0.182 Sum_probs=130.0
Q ss_pred CCCCcEEEccCCccCcc----CchhhhCCCCCcEEEeecccCCC---ccchhH------hhcCCCccEEEcccCcCCCcC
Q 040297 244 LPGLMDLNLSRNAFNGS----IPSSFADMKMLERLDISYNQLTG---EIPERM------ATGCFLLEILALSNNNLQGHI 310 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~---~~~~~~------~~~l~~L~~L~L~~n~l~~~~ 310 (773)
...+++|+|++|.+... +...+...++|+.++++++.... ..+... ...+++|+.|++++|.+....
T Consensus 30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 109 (344)
T d2ca6a1 30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 109 (344)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence 56788888888877543 22345567788888887765431 111111 122455666666666554422
Q ss_pred c----ccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCCCcchhhcCCCCCcEEEcccCcCCCCc----
Q 040297 311 F----SKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSGRIPRWLGNLSALEDIRMSNNNLEGPI---- 382 (773)
Q Consensus 311 ~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---- 382 (773)
. ..+...++|++|++++|.+.......+.. .+..+ .........+.|+.+++++|.+....
T Consensus 110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l 178 (344)
T d2ca6a1 110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLENGSMKEW 178 (344)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeecccccccccccccc
Confidence 1 12233455555555555543111000000 00000 00001123345555555555543221
Q ss_pred cccccCCCCCcEEEccCCCCCCC-----CCCC-CCCCceeEEECCCcccccc----chhhhcCCCCeeEEeCCCCccccc
Q 040297 383 PIEFCQLDYLTILDLSNNAIFGT-----LPSC-FSPAFIEQVHLSKNKIEGQ----LESIIHDSPYLVTLDLSYNRFHGS 452 (773)
Q Consensus 383 ~~~~~~l~~L~~L~L~~n~l~~~-----~~~~-~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~ 452 (773)
...+..++.|+.|++++|.+... +... ...+.|+.|++++|.++.. +...+..+++|++|++++|.+++.
T Consensus 179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~ 258 (344)
T d2ca6a1 179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 258 (344)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence 11233445555666655555421 1111 1245666666666665433 335567788899999999988764
Q ss_pred cch----hhhc--CCCCcEEEccCccccccC----ccccc-CCCCCCEEEccCCcCCC
Q 040297 453 IPN----WINI--LPQLSSLLLGNNYIEGEI----PVQLC-ELKEVRLIDLSHNNLSG 499 (773)
Q Consensus 453 ~~~----~~~~--l~~L~~L~L~~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~ 499 (773)
... .+.. .+.|++|++++|+++... ...+. ++++|+.|++++|.+..
T Consensus 259 g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 333 2332 467999999999887432 23332 57889999999999864
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=7.3e-13 Score=113.88 Aligned_cols=86 Identities=26% Similarity=0.358 Sum_probs=64.3
Q ss_pred cccccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccC-CcccccCCCCCEE
Q 040297 566 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI-PSQLTVLNTLAVF 644 (773)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L 644 (773)
++.|++||+++|+|+ .+|+.++.+++|++|++++|.|++ +| .++++++|+.|++++|+++... +..+..+++|+.|
T Consensus 19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L 95 (124)
T d1dcea3 19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 95 (124)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEE
Confidence 347788888888887 567777888888888888888874 44 3778888888888888887543 2567778888888
Q ss_pred EccCCccccc
Q 040297 645 KVAYNNLSGK 654 (773)
Q Consensus 645 ~ls~N~l~~~ 654 (773)
++++|+++..
T Consensus 96 ~l~~N~i~~~ 105 (124)
T d1dcea3 96 NLQGNSLCQE 105 (124)
T ss_dssp ECTTSGGGGS
T ss_pred ECCCCcCCcC
Confidence 8888887643
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.6e-13 Score=124.33 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=66.9
Q ss_pred hhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEEEcccccCCccccccccCCCCC
Q 040297 265 FADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLL 344 (773)
Q Consensus 265 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 344 (773)
|.++.++++|+|++|+|+ .++. .+..+++|+.|++++|.++.. +.+..+++|++|++++|+++...+..+..+++|
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence 344555555555555555 4442 233455555555555555543 234555666666666666654433344455666
Q ss_pred CeeeCcCCcCCCCcc-hhhcCCCCCcEEEcccCcCCCCc---cccccCCCCCcEEE
Q 040297 345 AGLYLSDNHLSGRIP-RWLGNLSALEDIRMSNNNLEGPI---PIEFCQLDYLTILD 396 (773)
Q Consensus 345 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ 396 (773)
+.|++++|++..... ..+..+++|++|++++|.++... +..+..+++|+.||
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 666666666553211 24555566666666666554321 12344556666554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=4.7e-13 Score=115.12 Aligned_cols=103 Identities=22% Similarity=0.292 Sum_probs=89.3
Q ss_pred cEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcccccCCCCCEEEccCC
Q 040297 570 SGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLNTLAVFKVAYN 649 (773)
Q Consensus 570 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 649 (773)
+.|||++|+++ .++ .++.+++|++|++++|.|+ .+|+.|+.+++|+.|++++|++++. | .+..+++|+.|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 46999999999 455 4899999999999999999 6788899999999999999999854 4 5899999999999999
Q ss_pred cccccCC-CCCcccccCCcCcccCCCCCC
Q 040297 650 NLSGKIP-DRVAQFSTFEEDSYEGNPFLC 677 (773)
Q Consensus 650 ~l~~~~p-~~~~~~~~l~~~~l~~Np~lC 677 (773)
+++...+ ..+..++.++.++++|||...
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 9986543 456778899999999999643
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.24 E-value=2.7e-13 Score=127.46 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=36.1
Q ss_pred cccEEecccCcCcccCChhhhccCCCCeEeCCCCcCCCCCc-cccccCccCCeeeCccccCcccC
Q 040297 568 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKI 631 (773)
Q Consensus 568 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~ 631 (773)
.|+.|++++|+++. + +.+..+++|+.|++++|+|+.... ..++.+++|+.|+|++|++....
T Consensus 94 ~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 156 (198)
T d1m9la_ 94 TLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred cccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence 56666666666663 2 235566666666666666663221 34566666666666666665433
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.18 E-value=7.8e-13 Score=124.23 Aligned_cols=106 Identities=29% Similarity=0.260 Sum_probs=52.5
Q ss_pred CCCCcEEEccCCccCccCchhhhCCCCCcEEEeecccCCCccchhHhhcCCCccEEEcccCcCCCcCcccccCCCCCcEE
Q 040297 244 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISYNQLTGEIPERMATGCFLLEILALSNNNLQGHIFSKKFNLTNLMRL 323 (773)
Q Consensus 244 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 323 (773)
+++|++|+|++|+++. ++ .+..+++|++|++++|.++ .+|... ..+++|+.|++++|.++.. +.+..+++|++|
T Consensus 47 L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~-~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L 120 (198)
T d1m9la_ 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELWISYNQIASL--SGIEKLVNLRVL 120 (198)
T ss_dssp TTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHH-HHHHHCCEEECSEEECCCH--HHHHHHHHSSEE
T ss_pred ccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccc-ccccccccccccccccccc--cccccccccccc
Confidence 5555666666555553 22 3555555666666666555 444322 2234455555555555532 223445555555
Q ss_pred EcccccCCcccc-ccccCCCCCCeeeCcCCcCC
Q 040297 324 QLDGNNFTGEIS-DSLSNCRLLAGLYLSDNHLS 355 (773)
Q Consensus 324 ~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~ 355 (773)
++++|+++.... ..+..+++|+.|++++|++.
T Consensus 121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred ccccchhccccccccccCCCccceeecCCCccc
Confidence 555555543211 23455555555555555443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.1e-10 Score=102.62 Aligned_cols=104 Identities=22% Similarity=0.210 Sum_probs=54.3
Q ss_pred cEEEcccccCCccccccccCCCCCCeeeCcCC-cCCCCcchhhcCCCCCcEEEcccCcCCCCccccccCCCCCcEEEccC
Q 040297 321 MRLQLDGNNFTGEISDSLSNCRLLAGLYLSDN-HLSGRIPRWLGNLSALEDIRMSNNNLEGPIPIEFCQLDYLTILDLSN 399 (773)
Q Consensus 321 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 399 (773)
+.++.+++.+. ..|..+..+++|+.|++++| .++...+.+|.++++|+.|++++|+++...+.+|..+++|+.|+|++
T Consensus 11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 34455554444 33444555555555555443 35544444555556666666666665555555555566666666666
Q ss_pred CCCCCCCCCCCCCCceeEEECCCccc
Q 040297 400 NAIFGTLPSCFSPAFIEQVHLSKNKI 425 (773)
Q Consensus 400 n~l~~~~~~~~~~~~L~~L~l~~n~l 425 (773)
|+++...+..+....++.|++++|.+
T Consensus 90 N~l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 90 NALESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCCcccChhhhccccccccccCCCcc
Confidence 65554444444433444444444443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=4.2e-07 Score=81.25 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=47.4
Q ss_pred cccccEEecccCcCcccC--ChhhhccCCCCeEeCCCCcCCCCCccccccCccCCeeeCccccCcccCCcc-------cc
Q 040297 566 LTSMSGIDLSCNKLTGEI--PTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ-------LT 636 (773)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-------l~ 636 (773)
++.|++|+|++|+|+... +..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|++....... +.
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~ 143 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence 456777777777776432 344566677777777777776433323334455677777777776544322 44
Q ss_pred cCCCCCEEE
Q 040297 637 VLNTLAVFK 645 (773)
Q Consensus 637 ~l~~L~~L~ 645 (773)
.+++|++||
T Consensus 144 ~~P~L~~LD 152 (162)
T d1koha1 144 RFPKLLRLD 152 (162)
T ss_dssp TSTTCCEET
T ss_pred HCCCCCEEC
Confidence 566666654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=2.1e-07 Score=83.26 Aligned_cols=66 Identities=32% Similarity=0.201 Sum_probs=31.9
Q ss_pred hcCCCccEEEcccCcCCCcC--cccccCCCCCcEEEcccccCCccccccccCCCCCCeeeCcCCcCCC
Q 040297 291 TGCFLLEILALSNNNLQGHI--FSKKFNLTNLMRLQLDGNNFTGEISDSLSNCRLLAGLYLSDNHLSG 356 (773)
Q Consensus 291 ~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 356 (773)
..++.|++|++++|+++... +..+..+++|+.|++++|.++...+-.+.....|+.|++++|++..
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence 34555555555555555432 1223345555555555555553322222233345555555555543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.41 E-value=6.7e-05 Score=66.74 Aligned_cols=16 Identities=13% Similarity=0.426 Sum_probs=7.2
Q ss_pred hCCCCCcEEEeecccC
Q 040297 266 ADMKMLERLDISYNQL 281 (773)
Q Consensus 266 ~~l~~L~~L~Ls~n~l 281 (773)
...+.|++|++++|.+
T Consensus 41 ~~n~~L~~L~Ls~n~l 56 (167)
T d1pgva_ 41 CNSKHIEKFSLANTAI 56 (167)
T ss_dssp TTCSCCCEEECTTSCC
T ss_pred hhCCccceeecccccc
Confidence 3344444444444444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.34 E-value=9.4e-05 Score=65.75 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=7.1
Q ss_pred CCCCCcEEEeec
Q 040297 267 DMKMLERLDISY 278 (773)
Q Consensus 267 ~l~~L~~L~Ls~ 278 (773)
+.+.|++|+|++
T Consensus 13 n~~~L~~L~L~~ 24 (167)
T d1pgva_ 13 DDTDLKEVNINN 24 (167)
T ss_dssp TCSSCCEEECTT
T ss_pred CCCCCcEEEeCC
Confidence 345666666665
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.82 E-value=0.00021 Score=63.40 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=34.0
Q ss_pred hhhcCCCCeeEEeCCC-Cccccc----cchhhhcCCCCcEEEccCccccccC----cccccCCCCCCEEEccCCcCC
Q 040297 431 SIIHDSPYLVTLDLSY-NRFHGS----IPNWINILPQLSSLLLGNNYIEGEI----PVQLCELKEVRLIDLSHNNLS 498 (773)
Q Consensus 431 ~~~~~~~~L~~L~Ls~-n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~ 498 (773)
....+.+.|++|++++ +.++.. +...+...++|++|++++|.++... ...+...++++.+++++|.+.
T Consensus 11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 3444556666666665 334422 1223334555666666666554321 122334455556666555554
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| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.71 E-value=0.00026 Score=62.72 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=21.4
Q ss_pred CCCCcEEEccC-CccCcc----CchhhhCCCCCcEEEeecccCC
Q 040297 244 LPGLMDLNLSR-NAFNGS----IPSSFADMKMLERLDISYNQLT 282 (773)
Q Consensus 244 l~~L~~L~L~~-n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~ 282 (773)
.+.|++|++++ +.++.. +-.++...+.|++|++++|.++
T Consensus 16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~ 59 (166)
T d1io0a_ 16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 59 (166)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence 46677777765 334321 2223445566666666666655
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