Citrus Sinensis ID: 040301
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 524 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.912 | 0.473 | 0.363 | 3e-75 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.917 | 0.466 | 0.341 | 9e-68 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.919 | 0.470 | 0.356 | 5e-67 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.895 | 0.375 | 0.321 | 2e-60 | |
| Q9ZUI0 | 980 | Putative leucine-rich rep | no | no | 0.935 | 0.5 | 0.327 | 7e-60 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.877 | 0.392 | 0.333 | 1e-58 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.893 | 0.373 | 0.326 | 6e-57 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.887 | 0.476 | 0.313 | 5e-54 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.916 | 0.428 | 0.302 | 2e-53 | |
| C0LGV1 | 1135 | LRR receptor-like serine/ | no | no | 0.948 | 0.437 | 0.295 | 2e-50 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 178/490 (36%), Positives = 285/490 (58%), Gaps = 12/490 (2%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
+ ++ N+ +G IP TFGN+ +L L L N+L ++SS FL++LTNC L+ L +G
Sbjct: 288 LGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSS--RDLEFLTSLTNCTQLETLGIG 344
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
N LGG LP I N SA + G+IP +IGNL L L L N L+G + +
Sbjct: 345 RNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTS 404
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
+G+L LR LSL N L G IP + ++ ++ + L+ N G +P L + + L EL +
Sbjct: 405 LGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWI 464
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-ST 263
G NKL +IP + ++ +L +++S NSL SLP +I L+ L L L N+LSG + T
Sbjct: 465 GDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQT 524
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
+G + +E+L L N F G IP+ G L+ ++ +DLS N+LSG IP+ + S L+ N
Sbjct: 525 LGNCLTMESLFLEGNLFYGDIPDLKG-LVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNL 583
Query: 324 SHNRLEGKILVKGSFKNFSAESFFGNYALC-GLPKFRVPPCKQGDSKSTKNVALIVLKYI 382
S N LEGK+ VKG F+N + S GN LC G+ F++ PC K + + K +
Sbjct: 584 SFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCLSQAPSVVKKHSSRLKKVV 643
Query: 383 LPPIVSSVLIVI-----IIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFN 437
+ V L+++ + ++++R RK++ + ++ + SY D++ AT+ F+
Sbjct: 644 IGVSVGITLLLLLFMASVTLIWLRKRKKNKETNNPTPSTLEVLHEKISYGDLRNATNGFS 703
Query: 438 ECNLLGTGSFGSVYKG-TISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
N++G+GSFG+VYK +++ VA+K+ N+Q A +SF +ECE L+++ HRNL+K+L
Sbjct: 704 SSNMVGSGSFGTVYKALLLTEKKVVAVKVLNMQRRGAMKSFMAECESLKDIRHRNLVKLL 763
Query: 497 SSCSNPDFKA 506
++CS+ DF+
Sbjct: 764 TACSSIDFQG 773
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 171/501 (34%), Positives = 273/501 (54%), Gaps = 20/501 (3%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
D+SSN SG IP +FG LR+L L N + ++ + F+ A+ NC L+ L +G
Sbjct: 295 FDISSNYLSGSIPLSFGKLRNL--WWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVG 352
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
N LGG LP I N S + + + + G IP +IGNL L LSL N L+G + +
Sbjct: 353 YNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVS 412
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
G+L L+ + L N + G IP ++ + + L N G IP L L +L +
Sbjct: 413 FGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWM 472
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-ST 263
+N+L +IP + + + I+LS+N L P + L++L L S N+LSG +
Sbjct: 473 DTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQA 532
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
IG + +E L + N F G IP+ + L+SL+++D S NNLSG+IP+ L +L L+ N
Sbjct: 533 IGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNL 591
Query: 324 SHNRLEGKILVKGSFKNFSAESFFGNYALC-GLPKFRVPPCKQGDSKSTKNVALIVLKYI 382
S N+ EG++ G F+N +A S FGN +C G+ + ++ PC + K L V K +
Sbjct: 592 SMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPCIV-QASPRKRKPLSVRKKV 650
Query: 383 LPPI---VSSVLIVIII--IMYIRCRKRSTKKSDH--EDFLPLATW-RRTSYLDIQRATD 434
+ I ++S+L++II+ + + RK+ SD D L + + SY ++ AT
Sbjct: 651 VSGICIGIASLLLIIIVASLCWFMKRKKKNNASDGNPSDSTTLGMFHEKVSYEELHSATS 710
Query: 435 EFNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
F+ NL+G+G+FG+V+KG + VA+K+ NL A +SF +ECE + + HRNL+
Sbjct: 711 RFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVLNLLKHGATKSFMAECETFKGIRHRNLV 770
Query: 494 KILSSCSN-----PDFKALMW 509
K+++ CS+ DF+AL++
Sbjct: 771 KLITVCSSLDSEGNDFRALVY 791
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 183/514 (35%), Positives = 274/514 (53%), Gaps = 32/514 (6%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLA-------------------- 63
++ + NSF+G IP T N+ L L + N+LT + L+
Sbjct: 278 ILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNY 337
Query: 64 --DQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI 121
FL ALTNC L+ L++G N LGG LP I N S + G+IP I
Sbjct: 338 SSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGI 397
Query: 122 GNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181
GNL L L L N L G + P++G L +LR + L N L G IP L ++ + + L
Sbjct: 398 GNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLL 457
Query: 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI 241
N G IP L S + L +L+LG+NKL SIP L L ++++N+S N L L +I
Sbjct: 458 NNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQDI 517
Query: 242 QTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 300
LK L LD+S N+LSG I T+ + LE L L N F GPIP+ G L L LDLS
Sbjct: 518 GKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRG-LTGLRFLDLS 576
Query: 301 GNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALC-GLPKFR 359
NNLSG IP+ + S L+ N S N +G + +G F+N SA S FGN LC G+P +
Sbjct: 577 KNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQ 636
Query: 360 VPPCKQGDSKSTKNVALIVLKYI--LPPIVSSVLIVIIIIMYIRCRKRSTKKSDHED--- 414
+ PC + +V I+ + + + + + ++ + + + R +S + +++E+
Sbjct: 637 LQPCSVELPRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNENDRS 696
Query: 415 FLPLAT-WRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLER 472
F P+ + + + SY ++ + T F+ NL+G+G+FG+V+KG + S VAIK+ NL
Sbjct: 697 FSPVKSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNLCKRG 756
Query: 473 AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506
A +SF +ECE L + HRNL+K+++ CS+ DF+
Sbjct: 757 AAKSFIAECEALGGIRHRNLVKLVTICSSSDFEG 790
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 169/526 (32%), Positives = 264/526 (50%), Gaps = 57/526 (10%)
Query: 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHL 78
HQ+ ++DL+ N SG IP++FG L+ L L+L N+L Q + +L + R+L
Sbjct: 504 HQLN-ILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSL--------QGNLPDSLISLRNL 554
Query: 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN 138
++L N L G + P+ G S+S+ +F N + IP E+GN + L L L N L
Sbjct: 555 TRINLSHNRLNGTIHPLCG--SSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLT 612
Query: 139 GTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTS 198
G I T+G++++L L + N L G+IP L K + I L N LSG IPP L L+
Sbjct: 613 GKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQ 672
Query: 199 LRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258
L EL L SN+ S+P+ L++ +L+++L NSLN S+P I L L VL+L +NQ S
Sbjct: 673 LGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFS 732
Query: 259 GDIS-------------------------TIGALVDLET-LSLASNQFQGPIPESVGSLI 292
G + IG L DL++ L L+ N F G IP ++G+L
Sbjct: 733 GSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLS 792
Query: 293 SLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYAL 352
LE+LDLS N L+G++P S+ + L N S N L GK+ K F + A+SF GN L
Sbjct: 793 KLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGL 850
Query: 353 CGLPKFRVPPCKQGDSKSTKNVALIVLKYILPPIVSSVLIVIIIIMYIRCRKRSTKKSDH 412
CG P R + + + + +V+ + + + L++++I ++ + R KK H
Sbjct: 851 CGSPLSRCNRVRSNNKQQGLSARSVVIISAISALTAIGLMILVIALFFKQRHDFFKKVGH 910
Query: 413 ED-----------------FLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTI 455
F A+ + DI AT +E ++G+G G VYK +
Sbjct: 911 GSTAYTSSSSSSQATHKPLFRNGASKSDIRWEDIMEATHNLSEEFMIGSGGSGKVYKAEL 970
Query: 456 SDWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSCS 500
+ VA+K + + + +SF E + L + HR+L+K++ CS
Sbjct: 971 ENGETVAVKKILWKDDLMSNKSFSREVKTLGRIRHRHLVKLMGYCS 1016
|
Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 176/538 (32%), Positives = 264/538 (49%), Gaps = 48/538 (8%)
Query: 25 MDLSSNSFSGHIPN-TFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
MDL SN SG +P+ + L L L++N+ + ++ + F ++L N L+ L L
Sbjct: 220 MDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELEL 279
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG--------------------- 122
N LGG + + + S + + ++ G+IP EI
Sbjct: 280 AGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPR 339
Query: 123 ---NLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179
L L + L NN L G I +G + +L L + NNL GSIP +L + +
Sbjct: 340 ELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLL 399
Query: 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP----SSLWSLEYILMINLSSNSLND 235
L GN LSG +P L +L L L N LT +IP S+L +L+ L +NLSSN L+
Sbjct: 400 LYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLK--LYLNLSSNHLSG 457
Query: 236 SLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISL 294
+P + + ++ +DLS N+LSG I +G+ + LE L+L+ N F +P S+G L L
Sbjct: 458 PIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYL 517
Query: 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCG 354
+ LD+S N L+G IP S + S LK N S N L G + KGSF + ESF G+ LCG
Sbjct: 518 KELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSKLTIESFLGDSLLCG 577
Query: 355 LPKFRVPPCKQGDS-------KSTKNVALIVLKYILPPIVSSVLIVIIIIMYIRCRKRST 407
K + CK+ +A VL P+V + +Y +
Sbjct: 578 SIK-GMQACKKKHKYPSVLLPVLLSLIATPVLCVFGYPLVQRSRFGKNLTVYAKEEVEDE 636
Query: 408 KKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFN 467
+K + D + R SY + AT FN +L+G+G FG VYKG + + T VA+K+ +
Sbjct: 637 EKQNQND----PKYPRISYQQLIAATGGFNASSLIGSGRFGHVYKGVLRNNTKVAVKVLD 692
Query: 468 LQLERAFR-SFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISITIIRRHL 524
+ F SF EC++L+ HRNLI+I+++CS P F AL+ + N S + RHL
Sbjct: 693 PKTALEFSGSFKRECQILKRTRHRNLIRIITTCSKPGFNALVLPLMPNGS---LERHL 747
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 178/534 (33%), Positives = 270/534 (50%), Gaps = 74/534 (13%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
++DLS N +G IP FG + +L+ + + N+ T E + D + NC +L+ LS+
Sbjct: 412 LLDLSHNQMTGEIPRGFGRM-NLTFISIGRNHFTGE--IPDD------IFNCSNLETLSV 462
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N L G L P+IG ++N L G IP+EIGNL+ L +L L +N G I
Sbjct: 463 ADNNLTGTLKPLIGKLQKLRILQVSYNS-LTGPIPREIGNLKDLNILYLHSNGFTGRIPR 521
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
M L L+GL + N+LEG IP ++ +KL+ + L+ NK SG IP + L SL L
Sbjct: 522 EMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLS 581
Query: 204 LGSNKLTSSIPSSLWSL------------------------------------------- 220
L NK SIP+SL SL
Sbjct: 582 LQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTI 641
Query: 221 -------EYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLE 271
E + I+LS+N + S+P ++Q K + LD S+N LSG I + +
Sbjct: 642 PKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMII 701
Query: 272 TLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGK 331
+L+L+ N F G IP+S G++ L SLDLS NNL+G+IP+SL LS LK + N L+G
Sbjct: 702 SLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGH 761
Query: 332 ILVKGSFKNFSAESFFGNYALCGLPKFRVPPC--KQGDSKSTKNVALIVLKYILPPIVSS 389
+ G FKN +A GN LCG K + PC KQ S +K +I++ IL +
Sbjct: 762 VPESGVFKNINASDLMGNTDLCG-SKKPLKPCTIKQKSSHFSKRTRVILI--ILGSAAAL 818
Query: 390 VLIVIIIIMYIRCRK-----RSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLLGT 444
+L+++++++ C+K ++ +S D +R ++++ATD FN N++G+
Sbjct: 819 LLVLLLVLILTCCKKKEKKIENSSESSLPDLDSALKLKRFEPKELEQATDSFNSANIIGS 878
Query: 445 GSFGSVYKGTISDWTNVAIKIFNLQLERAFRS--FDSECEVLRNVCHRNLIKIL 496
S +VYKG + D T +A+K+ NL+ A F +E + L + HRNL+KIL
Sbjct: 879 SSLSTVYKGQLEDGTVIAVKVLNLKEFSAESDKWFYTEAKTLSQLKHRNLVKIL 932
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 171/523 (32%), Positives = 264/523 (50%), Gaps = 55/523 (10%)
Query: 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHL 78
HQ+ V+DL+ N SG IP++FG L L L + +NN + + +L D +L N ++L
Sbjct: 505 HQMT-VIDLADNQLSGSIPSSFGFLTALE-LFMIYNN-SLQGNLPD------SLINLKNL 555
Query: 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN 138
++ SN G + P+ G S+S+ +F +G+IP E+G L L L N
Sbjct: 556 TRINFSSNKFNGSISPLCG--SSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFT 613
Query: 139 GTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTS 198
G I T G++ +L L + N+L G IP +L K + I L N LSG IP L L
Sbjct: 614 GRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPL 673
Query: 199 LRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258
L EL L SNK S+P+ ++SL IL + L NSLN S+P I L+ L L+L NQLS
Sbjct: 674 LGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLS 733
Query: 259 GDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLES-LDLSGNNLSGKIPKSLETLS 316
G + STIG L L L L+ N G IP +G L L+S LDLS NN +G+IP ++ TL
Sbjct: 734 GPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLP 793
Query: 317 HLKQFNASHNRLEGKI----------------------LVKGSFKNFSAESFFGNYALCG 354
L+ + SHN+L G++ +K F + A++F GN LCG
Sbjct: 794 KLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQADAFVGNAGLCG 853
Query: 355 LPKFRVPPCKQGDSKSTKNVA--LIVLKYILPPIVSSVLIVIIIIMYIRCRKRSTKK--- 409
P + C + SK+ ++++ +V+ + + + L+V++II++ + KK
Sbjct: 854 SP---LSHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVLVIILFFKQNHDLFKKVRG 910
Query: 410 -------SDHEDFLPL----ATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDW 458
+ PL + DI AT NE ++G+G G VYK + +
Sbjct: 911 GNSAFSSNSSSSQAPLFSNGGAKSDIKWDDIMEATHYLNEEFMIGSGGSGKVYKAELKNG 970
Query: 459 TNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSCS 500
+A+K + + + +SF+ E + L + HR+L+K++ CS
Sbjct: 971 ETIAVKKILWKDDLMSNKSFNREVKTLGTIRHRHLVKLMGYCS 1013
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 249/501 (49%), Gaps = 36/501 (7%)
Query: 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTE----------SSLADQWSFLSA- 71
W D+ +NS +G IP T GN L L++N LT E ++L+ Q + LS
Sbjct: 215 WYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLSGK 274
Query: 72 ----LTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGL 127
+ + L L L N L G +PP++GN + + + Y + KL G+IP E+GN+ L
Sbjct: 275 IPSVIGLMQALAVLDLSGNLLSGSIPPILGNLTFT-EKLYLHSNKLTGSIPPELGNMSKL 333
Query: 128 TLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187
L L +N L G I P +G+L L L++ N+LEG IP L + + + GNK SG
Sbjct: 334 HYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSG 393
Query: 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247
IP L S+ L+L SN + IP L + + ++LS+N +N +PS++ L+ L
Sbjct: 394 TIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHL 453
Query: 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
++LSRN ++G + G L + + L++N GPIPE + L ++ L L NNL+G
Sbjct: 454 LKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTG 513
Query: 307 KIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQG 366
+ SL L N SHN L G I +F FS +SF GN LCG + PC
Sbjct: 514 NV-GSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCG--SWLNSPCH-- 568
Query: 367 DSKSTKNVALIVLKYILPPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTS- 425
DS+ T V+ + + + I L+++++++ CR + T+
Sbjct: 569 DSRRTVRVS--ISRAAILGIAIGGLVILLMVLIAACRPHNPPPFLDGSLDKPVTYSTPKL 626
Query: 426 -----------YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAF 474
Y DI R T+ +E ++G G+ +VYK + + VAIK ++
Sbjct: 627 VILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKRLYSHNPQSM 686
Query: 475 RSFDSECEVLRNVCHRNLIKI 495
+ F++E E+L ++ HRNL+ +
Sbjct: 687 KQFETELEMLSSIKHRNLVSL 707
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 156/516 (30%), Positives = 260/516 (50%), Gaps = 36/516 (6%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNL--------------TTESSLADQWSFLS 70
+DLS N +G +P++FGN L SL L N+L TT + ++
Sbjct: 419 LDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFF 478
Query: 71 ALTNC--RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLT 128
T C R L+ +SL N L G +P + + + + + N K G+I + G L
Sbjct: 479 PETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGN-KFTGDIFEAFGIYPDLN 537
Query: 129 LLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGH 188
+ +N +G IS + +L L + NN+ G+IP ++ ++ + + L+ N L G
Sbjct: 538 FIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGE 597
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLR 248
+P + +LT+L L L N+L+ +P+ L L + ++LSSN+ + +P + L
Sbjct: 598 LPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLH 657
Query: 249 VLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308
++LSRN+ G I + L L L L+ NQ G IP + SL SL+ LDLS NNLSG I
Sbjct: 658 DMNLSRNKFDGSIPRLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLI 717
Query: 309 PKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCG-LPKFRVPPCKQGD 367
P + E + L + S+N+LEG + +F+ +A++ N LC +PK R+ PC++
Sbjct: 718 PTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCREL- 776
Query: 368 SKSTKNVALIVLKYILPPIVSSVLIVII----IIMYIRCRK----RSTKKSDHEDFLPLA 419
K KN L+V +IL PI+ ++I+ I IR RK R+T E+ +
Sbjct: 777 KKPKKNGNLVV--WILVPILGVLVILSICANTFTYCIRKRKLQNGRNTDPETGENMSIFS 834
Query: 420 TWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAF----- 474
+ Y DI +T+EF+ +L+GTG + VY+ + D T +A+K + ++
Sbjct: 835 VDGKFKYQDIIESTNEFDPTHLIGTGGYSKVYRANLQD-TIIAVKRLHDTIDEEISKPVV 893
Query: 475 -RSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509
+ F +E + L + HRN++K+ CS+ L++
Sbjct: 894 KQEFLNEVKALTEIRHRNVVKLFGFCSHRRHTFLIY 929
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 174/588 (29%), Positives = 266/588 (45%), Gaps = 91/588 (15%)
Query: 3 WRWGNHSPHGDSPSIPHQIYWV-----MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLT 57
W+ H P IP +I ++ +DLS N FSG IP +FGNL +L L+L+ NN+T
Sbjct: 307 WQNNLHGP------IPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNIT 360
Query: 58 TESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNI 117
S S L+NC L + +N + G++PP IG F + KL+GNI
Sbjct: 361 G--------SIPSILSNCTKLVQFQIDANQISGLIPPEIG-LLKELNIFLGWQNKLEGNI 411
Query: 118 PQE------------------------------------------------IGNLRGLTL 129
P E IGN L
Sbjct: 412 PDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVR 471
Query: 130 LSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHI 189
L L NN + G I +G L+ L L L NNL G +P ++ + + + + L+ N L G++
Sbjct: 472 LRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYL 531
Query: 190 PPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRV 249
P L+SLT L+ L + SN LT IP SL L + + LS NS N +PS++ L++
Sbjct: 532 PLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQL 591
Query: 250 LDLSRNQLSGDISTIGALVDLETLSLAS----NQFQGPIPESVGSLISLESLDLSGNNLS 305
LDLS N +SG I L D++ L +A N G IPE + +L L LD+S N LS
Sbjct: 592 LDLSSNNISGTIPE--ELFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLS 649
Query: 306 GKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALC--GLPKFRVPPC 363
G + +L L +L N SHNR G + F+ GN LC G V
Sbjct: 650 GDL-SALSGLENLVSLNISHNRFSGYLPDSKVFRQLIGAEMEGNNGLCSKGFRSCFVSNS 708
Query: 364 KQGDSKSTKNVALIVLKYILPPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRR 423
Q ++ + + + L V++VL V+ ++ IR ++ +D E L TW+
Sbjct: 709 SQLTTQRGVHSHRLRIAIGLLISVTAVLAVLGVLAVIRAKQMIRDDNDSETGENLWTWQF 768
Query: 424 TSYLDIQRATDEFNEC----NLLGTGSFGSVYKGTISDWTNVAIK------IFNLQLER- 472
T + + + +C N++G G G VYK + + +A+K + NL +
Sbjct: 769 TPFQKLNFTVEHVLKCLVEGNVIGKGCSGIVYKAEMPNREVIAVKKLWPVTVPNLNEKTK 828
Query: 473 ---AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517
SF +E + L ++ H+N+++ L C N + + LM+ + N S+
Sbjct: 829 SSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNKNTRLLMYDYMSNGSL 876
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 524 | ||||||
| 255572272 | 1089 | serine-threonine protein kinase, plant-t | 0.923 | 0.444 | 0.533 | 1e-136 | |
| 359483198 | 1087 | PREDICTED: probable LRR receptor-like se | 0.919 | 0.443 | 0.556 | 1e-130 | |
| 224116832 | 1061 | predicted protein [Populus trichocarpa] | 0.919 | 0.454 | 0.533 | 1e-126 | |
| 224139658 | 1019 | predicted protein [Populus trichocarpa] | 0.921 | 0.473 | 0.506 | 1e-123 | |
| 255585401 | 843 | serine-threonine protein kinase, plant-t | 0.923 | 0.574 | 0.492 | 1e-119 | |
| 359485451 | 1454 | PREDICTED: LRR receptor-like serine/thre | 0.919 | 0.331 | 0.486 | 1e-118 | |
| 359482811 | 1118 | PREDICTED: probable LRR receptor-like se | 0.937 | 0.439 | 0.487 | 1e-117 | |
| 359483688 | 1197 | PREDICTED: LRR receptor-like serine/thre | 0.927 | 0.406 | 0.484 | 1e-116 | |
| 359483677 | 1229 | PREDICTED: LRR receptor-like serine/thre | 0.938 | 0.400 | 0.478 | 1e-116 | |
| 359483685 | 1046 | PREDICTED: LRR receptor-like serine/thre | 0.938 | 0.470 | 0.476 | 1e-115 |
| >gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/487 (53%), Positives = 353/487 (72%), Gaps = 3/487 (0%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+++L SNSF+G IP++ G+LR+L +L L N L+++ + + + + S+L NC++LK L L
Sbjct: 389 ILELPSNSFTGFIPDSLGDLRNLQTLKLGANLLSSKKT-SQELTIFSSLKNCQNLKYLWL 447
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
NPL G LP +GN S S ++F A + +KG++ + IGNL LT L+L NNDL G I
Sbjct: 448 SYNPLDGYLPHSVGNLSNSLESFLASDGLIKGSVHESIGNLSSLTRLNLGNNDLTGRIPT 507
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
T+G LK L+GL L N+L+GSIP +LC L+ +Y + LTGNKLSG IP C ++LTSLR L
Sbjct: 508 TIGTLKHLQGLYLHGNDLDGSIPSELCDLRTLYNLELTGNKLSGSIPTCFSNLTSLRNLF 567
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIS- 262
L SN+ S+I S+LW+L+ IL +NL+SN L SLPS I+ L+ + ++++S+NQLSG+I
Sbjct: 568 LASNRFVSTISSTLWTLKDILQVNLASNYLTGSLPSEIENLRAVYMINISKNQLSGEIPI 627
Query: 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFN 322
+IG L DL L L+ N+ QGPIP+SVG + SLE LDLS NNLSG IPKSL+ L +LK FN
Sbjct: 628 SIGGLQDLAQLYLSGNKLQGPIPQSVGDIKSLEFLDLSSNNLSGMIPKSLDNLLYLKYFN 687
Query: 323 ASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKNV-ALIVLKY 381
S N L+G+I GSF NFSA+SF GN ALCG + +V PCK +S++T+ + IVL+Y
Sbjct: 688 VSFNYLQGEIPEGGSFSNFSAQSFIGNEALCGSARLQVSPCKDDNSRATETPGSKIVLRY 747
Query: 382 ILPPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNL 441
+LP IV +V ++ +IM R +R K S +DFL L T RR SY ++Q AT+ F E N
Sbjct: 748 VLPAIVFAVFVLAFVIMLKRYCERKAKFSIEDDFLALTTIRRISYHELQLATNGFQESNF 807
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG GSFGSVYKGT+SD T +A K+FNLQLERAF+SFD+ECEVLRN+ HRNL+KI++SCS
Sbjct: 808 LGMGSFGSVYKGTLSDGTVIAAKVFNLQLERAFKSFDTECEVLRNLRHRNLVKIITSCSG 867
Query: 502 PDFKALM 508
P+FKAL+
Sbjct: 868 PNFKALV 874
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/487 (55%), Positives = 345/487 (70%), Gaps = 5/487 (1%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
+D N +G IP+ G+LR L L L NNL ES + + SFL++LTNC+ L+ L L
Sbjct: 394 LDFGYNMLTGSIPHALGSLRFLERLNLGVNNLKGESYI-QELSFLTSLTNCKRLRILYLS 452
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
NPL GILP IGN S S Q F A CKLKGNIP EIGNL L LLSL NNDL GTI P+
Sbjct: 453 FNPLIGILPISIGNLSTSLQRFEANTCKLKGNIPTEIGNLSNLYLLSLNNNDLTGTIPPS 512
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
+G+L++L+GL L N L+GSIP D+C L+ + + LT N+LSG IP CL LT LR L+L
Sbjct: 513 IGQLQKLQGLYLPSNKLQGSIPNDICQLRNLGELFLTNNQLSGSIPACLGELTFLRHLYL 572
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-ST 263
GSNKL S+IPS+LWSL +IL +++SSN L LPS++ LKVL +DLSRNQLSG+I S
Sbjct: 573 GSNKLNSTIPSTLWSLIHILSLDMSSNFLVGYLPSDMGNLKVLVKIDLSRNQLSGEIPSN 632
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
IG L DL +LSLA N+F+GPI S +L SLE +DLS N L G+IPKSLE L +LK +
Sbjct: 633 IGGLQDLTSLSLAHNRFEGPILHSFSNLKSLEFMDLSDNALFGEIPKSLEGLVYLKYLDV 692
Query: 324 SHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKNVALIVLKYIL 383
S N L G+I +G F NFSAESF N ALCG P+ ++PPC+ G ST ++ ++LKYIL
Sbjct: 693 SFNGLYGEIPPEGPFANFSAESFMMNKALCGSPRLKLPPCRTGTRWST-TISWLLLKYIL 751
Query: 384 PPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLLG 443
P I+S++L + +I ++ RCRKR+ + L ATWRR SY +I +AT+ F+ NLLG
Sbjct: 752 PAILSTLLFLALIFVWTRCRKRNAVLPTQSESLLTATWRRISYQEIFQATNGFSAGNLLG 811
Query: 444 TGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP- 502
GS GSVY+GT+SD N AIK+FNLQ E AF+SFD+ECEV+ ++ HRNLIKI+SSCSN
Sbjct: 812 RGSLGSVYRGTLSDGKNAAIKVFNLQEEAAFKSFDAECEVMHHIRHRNLIKIVSSCSNSY 871
Query: 503 -DFKALM 508
DFKAL+
Sbjct: 872 IDFKALV 878
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116832|ref|XP_002317405.1| predicted protein [Populus trichocarpa] gi|222860470|gb|EEE98017.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/487 (53%), Positives = 329/487 (67%), Gaps = 5/487 (1%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
V+DLS NSFSG IP+ GNLR+L L L N LT++S ++ LS+L+NCR L L
Sbjct: 360 VLDLSYNSFSGRIPDLLGNLRNLQKLNLAENILTSKSLRSELSF-LSSLSNCRSLAYLRF 418
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
NPL G LP IGN SAS + YAF+C++ GNIP+ IGNL L L L N+L G I
Sbjct: 419 NGNPLRGRLPVSIGNLSASLEELYAFDCRIIGNIPRGIGNLSNLIGLILQQNELTGAIPS 478
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+GRLK L+ SL N L+G IP ++CHL+ + + L N SG +P CL+++TSLREL+
Sbjct: 479 EIGRLKHLQDFSLASNKLQGHIPNEICHLERLSYLYLLENGFSGSLPACLSNITSLRELY 538
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIST 263
LGSN+ T SIP++ WSL+ +L INLS NSL +LP I LKV+ V+D S NQLSGDI T
Sbjct: 539 LGSNRFT-SIPTTFWSLKDLLQINLSFNSLTGTLPLEIGNLKVVTVIDFSSNQLSGDIPT 597
Query: 264 -IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFN 322
I L +L SL+ N+ QGPIP S G L+SLE LDLS N+LSG IPKSLE L HLK FN
Sbjct: 598 SIADLQNLAHFSLSDNRMQGPIPSSFGDLVSLEFLDLSRNSLSGAIPKSLEKLVHLKTFN 657
Query: 323 ASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQ-GDSKSTKNVALIVLKY 381
S NRL+G+IL G F NFS SF N ALCG + +VPPCK + +K V++Y
Sbjct: 658 VSFNRLQGEILDGGPFANFSFRSFMDNEALCGPIRMQVPPCKSISTHRQSKRPREFVIRY 717
Query: 382 ILPPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNL 441
I+P I +L++ + ++ R R K S ED LP ATWR+ SY ++ RAT+ FNE NL
Sbjct: 718 IVPAIAFIILVLALAVIIFR-RSHKRKLSTQEDPLPPATWRKISYHELYRATEGFNETNL 776
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LGTGS GSVYKGT+SD +A+K+F+LQLE FDSECEVLR + HRNL+KI+SSC N
Sbjct: 777 LGTGSCGSVYKGTLSDGLCIAVKVFHLQLEGELMRFDSECEVLRMLRHRNLVKIISSCCN 836
Query: 502 PDFKALM 508
DFKAL+
Sbjct: 837 LDFKALI 843
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/486 (50%), Positives = 326/486 (67%), Gaps = 3/486 (0%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
++DLS N +G++ FGNLR L L L N+ T S + +F+++LTN R LK L +
Sbjct: 320 ILDLSYNKMTGNVLQEFGNLRALQVLSLQSNSFTNHPS-SQTLNFITSLTNSRQLKELHI 378
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
G NPL G+LP +GN S+ FY + KLKGNIP EIGNL L +LSL N L G I
Sbjct: 379 GDNPLDGMLPNSVGNLSSFLTKFYVYASKLKGNIPGEIGNLSNLIVLSLEENSLMGPIPT 438
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
T+G L++++ L L NNL GSIP D+C + + I L N LSG IP C+ +LTSLR L+
Sbjct: 439 TVGGLRKIQVLYLHKNNLNGSIPSDICLARRLVDITLNNNVLSGEIPSCIGNLTSLRNLY 498
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-S 262
L N L+S+IP +LWSL+ +L++NL SN L SLPS + ++ + LS NQLSG+I S
Sbjct: 499 LHFNILSSTIPMALWSLKDLLILNLHSNFLYGSLPSQVGEMEAAIGIRLSSNQLSGNIPS 558
Query: 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFN 322
TIG+L +L SL+ N FQG IPE+ G L+SLE LDLS NNLSG+IPKSLE L +L+ F+
Sbjct: 559 TIGSLQNLIRFSLSKNSFQGSIPEAFGGLVSLELLDLSQNNLSGEIPKSLEALRYLEFFS 618
Query: 323 ASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKNVALIVLKYI 382
S N L+G+I G F NF+A SF N LCG + +VPPC K +K + + L++
Sbjct: 619 VSFNGLQGEIPRGGPFANFTARSFIMNKGLCGPSRLQVPPCSIESRKDSKTKSRL-LRFS 677
Query: 383 LPPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLL 442
LP + S +L+V I + + CR+R K E A RR SYL++ AT+EF+E NLL
Sbjct: 678 LPTVASILLVVAFIFLVMGCRRRYRKDPIPEALPVTAIQRRISYLELLHATNEFHESNLL 737
Query: 443 GTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502
G GSFGSVY+G + D NVA+KIFNLQL+RAFRSFD+ECE++RN+ HRNL+KI+ SCSN
Sbjct: 738 GIGSFGSVYQGRLRDGLNVAVKIFNLQLQRAFRSFDTECEIMRNIRHRNLVKIICSCSNL 797
Query: 503 DFKALM 508
DFKAL+
Sbjct: 798 DFKALV 803
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585401|ref|XP_002533396.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526770|gb|EEF28996.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/495 (49%), Positives = 325/495 (65%), Gaps = 11/495 (2%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+++ SSNS SG IP+T NL++L L L N+ T D+ FL++L C+ L+ L L
Sbjct: 152 ILESSSNSLSGPIPDTLCNLKNLKRLNLADNSFT------DELGFLASLARCKELRRLVL 205
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
NPL LP IGN S S + F +C +KGNIP EIG L L L L NN+L G+I
Sbjct: 206 IGNPLNSTLPTSIGNLS-SIEYFNVQSCNIKGNIPSEIGVLSNLITLHLQNNELVGSIPV 264
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
T+G L++L+ L L N L GSIP D+CHL + + L+ N L G +P C L SLR LH
Sbjct: 265 TIGGLQKLQRLYLHGNLLYGSIPTDICHLSNLGELFLSNNSLFGPLPACFGDLISLRILH 324
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-S 262
L SN TS IP SLWSL+ +L +NLSSNSL+ +P +I LKVL +D S N LSG I +
Sbjct: 325 LHSNNFTSGIPFSLWSLKDVLELNLSSNSLSGHIPLSIGNLKVLTQVDFSYNSLSGIIPN 384
Query: 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFN 322
IG+L +L +LSL N+F+GPIPE G LISLESLDLS NNLSGKIPKSLE L +LK N
Sbjct: 385 AIGSLRNLMSLSLTHNRFEGPIPEPFGELISLESLDLSSNNLSGKIPKSLEQLKYLKYLN 444
Query: 323 ASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKNVALIVLKYI 382
S N L+G++ KG+F NFSA SF GN ALCG + PCK +K ++L Y+
Sbjct: 445 VSFNNLDGEVPNKGAFANFSASSFLGNLALCGSRLLPLMPCKNNTHGGSKTSTKLLLIYV 504
Query: 383 LPPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLL 442
LP +S+L + I++++RC+K + + D + + TWRR S+ ++++ATD F NLL
Sbjct: 505 LP---ASILTIAFILVFLRCQKVKLELENVMDIITVGTWRRISFQELEQATDGFCASNLL 561
Query: 443 GTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502
G G +GSVYKG + D TNVAIK+FNL +E AF+ FD+ECEV+ ++ HRNL+KI+S CSN
Sbjct: 562 GAGGYGSVYKGRLEDGTNVAIKVFNLGVEGAFKIFDTECEVMSSIRHRNLVKIISCCSNQ 621
Query: 503 DFKALMWGRLLNISI 517
DFKA++ + N S+
Sbjct: 622 DFKAIVLEYMPNGSL 636
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/485 (48%), Positives = 321/485 (66%), Gaps = 3/485 (0%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
+D+ N F+G +P GNLR L L L N LT E S A + FL++LTNC L+ L +
Sbjct: 764 LDIWDNFFTGDVPKDLGNLRRLEFLNLGSNQLTDEHS-ASEVGFLTSLTNCNFLRTLWIE 822
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
NPL GILP +GN S S ++F A C+ +G IP IGNL L L L +NDL G I T
Sbjct: 823 DNPLKGILPNSLGNLSISLESFDASACQFRGTIPTGIGNLTSLISLELGDNDLTGLIPTT 882
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
+G+LK+L+ L + N L GSIP DLC LK + + L+ N+L+G IP CL L LREL+L
Sbjct: 883 LGQLKKLQELGIAGNRLRGSIPNDLCRLKNLGYLFLSSNQLTGSIPSCLGYLPPLRELYL 942
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIS-T 263
SN L S+IP SLW+L +L++NLSSN L LP + +K +R LDLS+NQ+SG I T
Sbjct: 943 HSNALASNIPPSLWTLRGLLVLNLSSNFLTGHLPPEVGNIKSIRTLDLSKNQVSGHIPRT 1002
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
+G L +LE LSL+ N+ QGPIP G L+SL+ LDLS NNLSG IPKSL+ L++LK N
Sbjct: 1003 LGELQNLEDLSLSQNRLQGPIPLEFGDLLSLKFLDLSQNNLSGVIPKSLKALTYLKYLNV 1062
Query: 324 SHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKNVALIVLKYIL 383
S N+L+G+I G F NF+AESF N ALCG P F+V C + + L +LKYIL
Sbjct: 1063 SFNKLQGEIPDGGPFMNFTAESFIFNEALCGAPHFQVIACDKSTRSRSWRTKLFILKYIL 1122
Query: 384 PPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLLG 443
PP++S + +V+ ++++IR RK + + +LP + + S+ + AT+ F E NL+G
Sbjct: 1123 PPVISIITLVVFLVLWIRRRKNLEVPTPIDSWLP-GSHEKISHQQLLYATNYFGEDNLIG 1181
Query: 444 TGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503
GS VYKG +S+ VA+K+FNL+ + AFRSFDSECEV++++ HRNL+KI++ CSN D
Sbjct: 1182 KGSLSMVYKGVLSNGLTVAVKVFNLEFQGAFRSFDSECEVMQSIRHRNLVKIITCCSNLD 1241
Query: 504 FKALM 508
FKAL+
Sbjct: 1242 FKALV 1246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482811|ref|XP_002270207.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/494 (48%), Positives = 326/494 (65%), Gaps = 3/494 (0%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
+D+ +N F+G IP + GNL+ L +L L N L E + SF++ALTNCR L+ +++
Sbjct: 418 IDIGNNLFTGPIPPSLGNLKFLQTLSLGENQLKVEPG-RPELSFITALTNCRLLEEITMP 476
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
+NPLGGI+P IGN S +N AF C+LKG+IP IG+L+ L L L +N+LNG I T
Sbjct: 477 NNPLGGIIPNSIGNLSNHVRNIVAFGCQLKGHIPSGIGSLKNLGTLELGDNNLNGNIPST 536
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
+GRL+ L+ +++ N LEG IP +LC L+ + + L NKLSG IP C+ +L+ L++L L
Sbjct: 537 IGRLENLQRMNIFNNELEGPIPEELCGLRDLGELSLYNNKLSGSIPHCIGNLSRLQKLFL 596
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTI 264
SN LTSSIP+ LWSL +L +NLS NSL SLPS++ TL V+ +DLS N+L G+I I
Sbjct: 597 SSNSLTSSIPTGLWSLGNLLFLNLSFNSLGGSLPSDMGTLTVIEDIDLSWNKLIGNIPGI 656
Query: 265 -GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
G L +L+L+ N FQ IPE++G L +LE +DLS NNLSG IPKS E LSHLK N
Sbjct: 657 LGTFESLYSLNLSRNSFQEAIPETLGKLRALEFMDLSQNNLSGTIPKSFEALSHLKYLNL 716
Query: 324 SHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKNVALIVLKYIL 383
S N L G+I G F NF+A+SF N ALCG V PC ++ +K ++LKY+L
Sbjct: 717 SFNNLSGEIPNGGPFVNFTAQSFLENKALCGRSILLVSPCPTNRTQESK-TKQVLLKYVL 775
Query: 384 PPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLLG 443
P I + V+ + M RK + + D LP R SYL++QRAT+ F E NLLG
Sbjct: 776 PGIAAVVVFGALYYMLKNYRKGKLRIQNLVDLLPSIQHRMISYLELQRATNSFCETNLLG 835
Query: 444 TGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503
GSFGSVYKG +SD T VA+K+ NL+LE AF+SFD+EC+VL + HRNLIK++SSCSN D
Sbjct: 836 VGSFGSVYKGILSDGTTVAVKVLNLRLEGAFKSFDAECKVLARIRHRNLIKVISSCSNLD 895
Query: 504 FKALMWGRLLNISI 517
+AL+ + N S+
Sbjct: 896 VRALVLQYMSNGSL 909
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483688|ref|XP_003633002.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 237/489 (48%), Positives = 321/489 (65%), Gaps = 3/489 (0%)
Query: 30 NSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLG 89
NSF+G++P GNL L L L N LT E LA SFL++LTNC+ L+ L +G NPL
Sbjct: 512 NSFTGNVPKDLGNLTKLEVLNLANNQLTDEH-LASGVSFLTSLTNCKFLRTLWIGYNPLK 570
Query: 90 GILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLK 149
G LP +GN + ++F A+ C+ +G IP IGNL L +L L NDL G+I T+G+L+
Sbjct: 571 GTLPNSLGNLPIALESFNAYACQFRGTIPTGIGNLTNLIMLHLGANDLTGSIPTTLGQLQ 630
Query: 150 QLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKL 209
+L+ LS+ N + GSIP DLCHLK + + L+ NKLSG P C L +LREL L SN L
Sbjct: 631 KLQALSIAGNRIRGSIPNDLCHLKNLGYLGLSSNKLSGSTPSCFGDLLALRELFLDSNAL 690
Query: 210 TSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALV 268
+IP+SLWSL +L++NLSSN L +LP + +K + LDLS+N +SG I S +G L
Sbjct: 691 AFNIPTSLWSLRDLLVLNLSSNFLTGNLPPEVGNMKYIITLDLSKNLVSGYIPSRMGKLQ 750
Query: 269 DLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
+L TLSL+ N+ QGPIP G L+SLESLDLS NNLS IPKSLE L +LK N S N+L
Sbjct: 751 NLITLSLSQNKLQGPIPVECGDLVSLESLDLSQNNLSRIIPKSLEALIYLKYLNVSFNKL 810
Query: 329 EGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKNVALIVLKYILPPIVS 388
+G+I G F NF+AESF N ALCG P F+V C + + + +LKYIL P+ S
Sbjct: 811 QGEIPNGGPFVNFNAESFMFNEALCGAPHFQVMACDKNNRTQSWKTKSFILKYILLPVGS 870
Query: 389 SVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLLGTGSFG 448
+V +V+ I+++IR R + +LP T + S+ + AT++F E NL+G GS G
Sbjct: 871 TVTLVVFIVLWIRRRDNMEIPTPIASWLP-GTHEKISHQQLLYATNDFGEDNLIGKGSQG 929
Query: 449 SVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508
VYKG +S+ VAIK+FNL+ +RA RSFDSECEV++ + HRNL++I++ CSN DFKAL+
Sbjct: 930 MVYKGVLSNGLIVAIKVFNLEFQRALRSFDSECEVMQGIRHRNLVRIITCCSNLDFKALV 989
Query: 509 WGRLLNISI 517
+ N S+
Sbjct: 990 LEYMPNGSL 998
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 237/495 (47%), Positives = 321/495 (64%), Gaps = 3/495 (0%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
V+ LS+NSF+G++P GNL L L L N LT E +A + FL++LTNC+ LK L +
Sbjct: 538 VLGLSANSFTGNVPKDLGNLTKLKVLDLAGNQLTDEH-VASEVGFLTSLTNCKFLKNLWI 596
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
G+NP G LP +GN + ++F A C+ +G IP IGNL L L L NDL G+I
Sbjct: 597 GNNPFKGTLPNSLGNLPIALESFIASACQFRGTIPTRIGNLTNLIWLDLGANDLTGSIPT 656
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
T+GRLK+L+ L + N L GSIP DLCHLK + + L+ NKLSG IP C L +L+EL
Sbjct: 657 TLGRLKKLQKLHIVGNRLRGSIPNDLCHLKNLGYLHLSSNKLSGSIPSCFGDLPALQELF 716
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-S 262
L SN L +IP+SLWSL +L++NLSSN L +LP + +K + LDLS+N +SG I
Sbjct: 717 LDSNVLAFNIPTSLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVSGHIPR 776
Query: 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFN 322
+G +L LSL+ N+ QGPIP G L+SLESLDLS NNLSG IPKSLE L +LK N
Sbjct: 777 KMGEQQNLAKLSLSQNKLQGPIPIEFGDLVSLESLDLSQNNLSGTIPKSLEALIYLKYLN 836
Query: 323 ASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKNVALIVLKYI 382
S N+L+G+I G F NF+AESF N ALCG P F+V C + + + +LKYI
Sbjct: 837 VSLNKLQGEIPNGGPFINFTAESFMFNEALCGAPHFQVMACDKNNRTQSWKTKSFILKYI 896
Query: 383 LPPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLL 442
L P+ S V +V+ I+++IR R + + +LP T + S+ + AT++F E NL+
Sbjct: 897 LLPVGSIVTLVVFIVLWIRRRDNMEIPTPIDSWLP-GTHEKISHQQLLYATNDFGEDNLI 955
Query: 443 GTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502
G GS G VYKG +S+ VAIK+FNL+ + A RSFDSECEV++ + HRNL++I++ CSN
Sbjct: 956 GKGSQGMVYKGVLSNGLTVAIKVFNLEFQGALRSFDSECEVMQGIRHRNLVRIITCCSNL 1015
Query: 503 DFKALMWGRLLNISI 517
DFKAL+ + N S+
Sbjct: 1016 DFKALVLEYMPNGSL 1030
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483685|ref|XP_002263372.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 236/495 (47%), Positives = 321/495 (64%), Gaps = 3/495 (0%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
V+ LS NSF+G++P NL L L L +N LT E LA FL++LTNC+ L+ L +
Sbjct: 355 VLSLSDNSFTGNVPKDLCNLTKLQFLDLAYNQLTDEH-LASGVGFLTSLTNCKFLRNLWI 413
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
G NPL G LP +GN + + F A C+ +G IP IGNL L L L NDL G+I
Sbjct: 414 GYNPLTGTLPNSLGNLPIALEIFIASACQFRGTIPTGIGNLTNLIWLDLGANDLTGSIPT 473
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
T+G+L++L+ LS+ N + GSIP DLCHLK + +RL+ NKLSG IP C L +LREL
Sbjct: 474 TLGQLQKLQALSIVGNRIRGSIPNDLCHLKNLGYLRLSYNKLSGSIPSCFGDLPALRELS 533
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-S 262
L SN L +IP S WSL +L++NLSSN L +LP + +K + LDLS+N +SG I S
Sbjct: 534 LDSNVLAFNIPMSFWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVSGYIPS 593
Query: 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFN 322
+G L +L TLSL+ N+ QGPIP G L+SLESLDLS NNLSG IPK+LE L +LK N
Sbjct: 594 RMGKLQNLITLSLSQNKLQGPIPVEFGDLVSLESLDLSQNNLSGTIPKTLEALIYLKYLN 653
Query: 323 ASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKNVALIVLKYI 382
S N+L+G+I G F F+AESF N ALCG P F+V C + + + +LKYI
Sbjct: 654 VSFNKLQGEIPNGGPFVKFTAESFMFNEALCGAPHFQVMACDKNNRTQSWKTKSFILKYI 713
Query: 383 LPPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLL 442
L P+ S+V +V+ I+++IR R + + +LP T + S+ + AT++F E NL+
Sbjct: 714 LLPVGSTVTLVVFIVLWIRRRDNMEIPTPIDSWLP-GTHEKISHQQLLYATNDFGEDNLI 772
Query: 443 GTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502
G GS G VYKG +S+ VAIK+FNL+ + A RSF+SECEV++ + HRNL++I++ CSN
Sbjct: 773 GKGSQGMVYKGVLSNGLTVAIKVFNLEFQGALRSFNSECEVMQGIRHRNLVRIITCCSNL 832
Query: 503 DFKALMWGRLLNISI 517
DFKAL+ + N S+
Sbjct: 833 DFKALVLKYMPNGSL 847
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 524 | ||||||
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.958 | 0.489 | 0.360 | 1.1e-68 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.910 | 0.465 | 0.350 | 9.3e-68 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.931 | 0.600 | 0.327 | 1.1e-64 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.910 | 0.472 | 0.331 | 1.4e-64 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.908 | 0.471 | 0.319 | 5.8e-60 | |
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.917 | 0.466 | 0.312 | 1.8e-59 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.856 | 0.444 | 0.326 | 4.2e-58 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.795 | 0.355 | 0.342 | 8.1e-52 | |
| TAIR|locus:2047525 | 980 | AT2G24130 [Arabidopsis thalian | 0.919 | 0.491 | 0.328 | 4e-50 | |
| TAIR|locus:2005507 | 976 | ER "ERECTA" [Arabidopsis thali | 0.704 | 0.378 | 0.312 | 2.1e-46 |
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 1.1e-68, P = 1.1e-68
Identities = 189/524 (36%), Positives = 271/524 (51%)
Query: 6 GNHSPHGDSP-SIPHQIYW-VMDLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXA 63
G + HG P S+ + + V+ + N FSG I + FG LR+
Sbjct: 281 GTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQ-- 338
Query: 64 DQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNC-KLKGNIPQEIG 122
D W F+S LTNC L+ L+LG N LGG+LP N S S +F A K+ G+IP++IG
Sbjct: 339 DDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSL-SFLALELNKITGSIPKDIG 397
Query: 123 NLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKY-NNLEGSIPYDLCHLKLMYGIRLT 181
NL GL L L NN+ G++ ++GRLK L G+ L Y NNL GSIP + +L + + L
Sbjct: 398 NLIGLQHLYLCNNNFRGSLPSSLGRLKNL-GILLAYENNLSGSIPLAIGNLTELNILLLG 456
Query: 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXX-XX 240
NK SG IP L++LT+L L L +N L+ IPS L++++
Sbjct: 457 TNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQE 516
Query: 241 XQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 299
LK L N+LSG I +T+G L L L +N G IP ++G L LE+LDL
Sbjct: 517 IGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDL 576
Query: 300 SGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCG-LPKF 358
S NNLSG+IP SL ++ L N S N G++ G+F S S GN LCG +P
Sbjct: 577 SSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGGIPDL 636
Query: 359 RVPPCKQGDSKSTKNVALIVLKYXXXXXXXXXXXXXXXXMYIRCRKRSTKKSDHEDFLPL 418
+P C ++ K+ ++ + + + K+ PL
Sbjct: 637 HLPRCCPL-LENRKHFPVLPISVSLAAALAILSSLYLLITWHKRTKKGAPSRTSMKGHPL 695
Query: 419 ATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFD 478
SY + +ATD F NLLG+GSFGSVYKG ++ +VA+K+ L+ +A +SF
Sbjct: 696 V-----SYSQLVKATDGFAPTNLLGSGSFGSVYKGKLNIQDHVAVKVLKLENPKALKSFT 750
Query: 479 SECEVLRNVCHRNLIKILSSCSN-----PDFKALMWGRLLNISI 517
+ECE LRN+ HRNL+KI++ CS+ DFKA+++ + N S+
Sbjct: 751 AECEALRNMRHRNLVKIVTICSSIDNRGNDFKAIVYDFMPNGSL 794
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 9.3e-68, Sum P(2) = 9.3e-68
Identities = 172/491 (35%), Positives = 248/491 (50%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALSLG 84
+D+ SN +G IP +FG L++ + FL ALTNC L+ L++G
Sbjct: 303 LDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYS--SGDLDFLGALTNCSQLQYLNVG 360
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
N LGG LP I N S + G+IP IGNL L L L N L G + P+
Sbjct: 361 FNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPS 420
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
+G L +LR + L N L G IP L ++ + + L N G IP L S + L +L+L
Sbjct: 421 LGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNL 480
Query: 205 GSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQLSGDI-ST 263
G+NKL SIP L L LK L LD+S N+LSG I T
Sbjct: 481 GTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFLLALDVSYNKLSGQIPQT 540
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
+ + LE L L N F GPIP+ G L L LDLS NNLSG IP+ + S L+ N
Sbjct: 541 LANCLSLEFLLLQGNSFVGPIPDIRG-LTGLRFLDLSKNNLSGTIPEYMANFSKLQNLNL 599
Query: 324 SHNRLEGKILVKGSFKNFSAESFFGNYALCG-LPKFRVPPCKQGDSKSTKNVALIVLKYX 382
S N +G + +G F+N SA S FGN LCG +P ++ PC + +V I+
Sbjct: 600 SLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPCSVELPRRHSSVRKIIT-IC 658
Query: 383 XXXXXXXXXXXXXXXMYI---RCRKRSTKKSDHED---FLPLAT-WRRTSYLDIQRATDE 435
+Y+ + R +S + +++E+ F P+ + + + SY ++ + T
Sbjct: 659 VSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNENDRSFSPVKSFYEKISYDELYKTTGG 718
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
F+ NL+G+G+FG+V+KG + VAIK+ NL A +SF +ECE L + HRNL+K
Sbjct: 719 FSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNLCKRGAAKSFIAECEALGGIRHRNLVK 778
Query: 495 ILSSCSNPDFK 505
+++ CS+ DF+
Sbjct: 779 LVTICSSSDFE 789
|
|
| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 166/507 (32%), Positives = 255/507 (50%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALSL 83
+ + NSFSG +P G +R+ + W F++ALTNC +L+ + L
Sbjct: 275 IFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEET--NDWKFMTALTNCSNLQEVEL 332
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
G GG+LP + N S+S + + K+ G++P++IGNL L LSL NN L G++
Sbjct: 333 GGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLANNSLTGSLPS 392
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+ +LK LR L++ N L GS+P + +L + + + N G IP L +LT L +++
Sbjct: 393 SFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTLGNLTKLFQIN 452
Query: 204 LGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXX-XXXQTLKVLRVLDLSRNQLSGDI- 261
LG N IP ++S+ LK + N+LSG+
Sbjct: 453 LGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKLKNIVEFHADSNKLSGENP 512
Query: 262 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQF 321
STIG L+ L L +N G IP ++ L L++LDLSGNNLSG+IP SL + L
Sbjct: 513 STIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQIPMSLGDMPLLHSL 572
Query: 322 NASHNRLEGKILVKGSFKNFSAESFFGNYALCG-LPKFRVPPCKQGDSKSTKNVALIVLK 380
N S N G++ G F N S GN +CG +P+ +P C K K+ L+++
Sbjct: 573 NLSFNSFHGEVPTNGVFANASEIYIQGNAHICGGIPELHLPTCSLKSRKKKKHQILLLV- 631
Query: 381 YXXXXXXXXXXXXXXXXMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECN 440
M + C KR +K + + +Y + +ATD F+ +
Sbjct: 632 -VVICLVSTLAVFSLLYMLLTCHKR--RKKEVPATTSMQGHPMITYKQLVKATDGFSSSH 688
Query: 441 LLGTGSFGSVYKGTIS----DWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495
LLG+GSFGSVYKG + T+ VA+++ L+ +A +SF +ECE LRN HRNL+KI
Sbjct: 689 LLGSGSFGSVYKGEFDSQDGEITSLVAVRVLKLETPKALKSFTAECETLRNTRHRNLVKI 748
Query: 496 LSSCSN-----PDFKALMWGRLLNISI 517
++ CS+ DFKA+++ + N S+
Sbjct: 749 VTICSSIDNRGNDFKAIVYDFMPNGSL 775
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 162/489 (33%), Positives = 256/489 (52%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALSLG 84
+ ++ N+ +G IP TFGN+ + FL++LTNC L+ L +G
Sbjct: 288 LGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSR--DLEFLTSLTNCTQLETLGIG 344
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
N LGG LP I N SA + G+IP +IGNL L L L N L+G + +
Sbjct: 345 RNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTS 404
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
+G+L LR LSL N L G IP + ++ ++ + L+ N G +P L + + L EL +
Sbjct: 405 LGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWI 464
Query: 205 GSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQLSGDI-ST 263
G NKL +IP + ++ L+ L L L N+LSG + T
Sbjct: 465 GDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQT 524
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
+G + +E+L L N F G IP+ G L+ ++ +DLS N+LSG IP+ + S L+ N
Sbjct: 525 LGNCLTMESLFLEGNLFYGDIPDLKG-LVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNL 583
Query: 324 SHNRLEGKILVKGSFKNFSAESFFGNYALCG-LPKFRVPPC-KQGDS---KSTKNVALIV 378
S N LEGK+ VKG F+N + S GN LCG + F++ PC Q S K + + +V
Sbjct: 584 SFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCLSQAPSVVKKHSSRLKKVV 643
Query: 379 LKYXXXXXXXXXXXXXXXXM-YIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFN 437
+ + ++R RK++ + ++ + SY D++ AT+ F+
Sbjct: 644 IGVSVGITLLLLLFMASVTLIWLRKRKKNKETNNPTPSTLEVLHEKISYGDLRNATNGFS 703
Query: 438 ECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
N++G+GSFG+VYK + ++ VA+K+ N+Q A +SF +ECE L+++ HRNL+K+L
Sbjct: 704 SSNMVGSGSFGTVYKALLLTEKKVVAVKVLNMQRRGAMKSFMAECESLKDIRHRNLVKLL 763
Query: 497 SSCSNPDFK 505
++CS+ DF+
Sbjct: 764 TACSSIDFQ 772
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 5.8e-60, P = 5.8e-60
Identities = 155/485 (31%), Positives = 237/485 (48%)
Query: 27 LSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALSLGSN 86
+ N +G I FG L + +FL ALTNC HL LS+ N
Sbjct: 290 IGKNRMTGSISPNFGKLENLHYLELANNSLGSYSFG--DLAFLDALTNCSHLHGLSVSYN 347
Query: 87 PLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMG 146
LGG LP I N S + G+IP +IGNL GL L L +N L G + ++G
Sbjct: 348 RLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIGLQSLLLADNLLTGPLPTSLG 407
Query: 147 RLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGS 206
L L L L N G IP + +L + + L+ N G +PP L + + +L +G
Sbjct: 408 NLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEGIVPPSLGDCSHMLDLQIGY 467
Query: 207 NKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQLSGDI-STIG 265
NKL +IP + + L+ L L L N LSG + T+G
Sbjct: 468 NKLNGTIPKEIMQIPTLVHLNMESNSLSGSLPNDIGRLQNLVELLLGNNNLSGHLPQTLG 527
Query: 266 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325
+ +E + L N F G IP+ G L+ ++++DLS NNLSG I + E S L+ N S
Sbjct: 528 KCLSMEVIYLQENHFDGTIPDIKG-LMGVKNVDLSNNNLSGSISEYFENFSKLEYLNLSD 586
Query: 326 NRLEGKILVKGSFKNFSAESFFGNYALCG-LPKFRVPPC-KQGDSKSTKNVALI--VLKY 381
N EG++ +G F+N + S FGN LCG + + ++ PC Q T++ +L+ V
Sbjct: 587 NNFEGRVPTEGIFQNATLVSVFGNKNLCGSIKELKLKPCIAQAPPVETRHPSLLKKVAIG 646
Query: 382 XXXXXXXXXXXXXXXXMYIRCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNL 441
+ + RK + K ++ F + SY D++ ATD F+ N+
Sbjct: 647 VSVGIALLLLLFIVSLSWFKKRKNNQKINNSAPFTLEIFHEKLSYGDLRNATDGFSSSNI 706
Query: 442 LGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCS 500
+G+GSFG+V+K + VA+K+ N+Q A +SF +ECE L+++ HRNL+K+L++C+
Sbjct: 707 VGSGSFGTVFKALLQTENKIVAVKVLNMQRRGAMKSFMAECESLKDIRHRNLVKLLTACA 766
Query: 501 NPDFK 505
+ DF+
Sbjct: 767 SIDFQ 771
|
|
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 1.8e-59, P = 1.8e-59
Identities = 156/499 (31%), Positives = 246/499 (49%)
Query: 26 DLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALSLGS 85
D+SSN SG IP +FG LR+ + F+ A+ NC L+ L +G
Sbjct: 296 DISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLE--FIGAVANCTQLEYLDVGY 353
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N LGG LP I N S + + + + G IP +IGNL L LSL N L+G + +
Sbjct: 354 NRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSF 413
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
G+L L+ + L N + G IP ++ + + L N G IP L L +L +
Sbjct: 414 GKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMD 473
Query: 206 SNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQLSGDI-STI 264
+N+L +IP + + L++L L S N+LSG + I
Sbjct: 474 TNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAI 533
Query: 265 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324
G + +E L + N F G IP+ + L+SL+++D S NNLSG+IP+ L +L L+ N S
Sbjct: 534 GGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNLS 592
Query: 325 HNRLEGKILVKGSFKNFSAESFFGNYALCG-LPKFRVPPC-KQGDSKSTKNVAL---IVL 379
N+ EG++ G F+N +A S FGN +CG + + ++ PC Q + K +++ +V
Sbjct: 593 MNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPCIVQASPRKRKPLSVRKKVVS 652
Query: 380 KYXXXXXXXXXXXXXXXXMYIRCRKRSTKKSDHE--DFLPLATWR-RTSYLDIQRATDEF 436
+ RK+ SD D L + + SY ++ AT F
Sbjct: 653 GICIGIASLLLIIIVASLCWFMKRKKKNNASDGNPSDSTTLGMFHEKVSYEELHSATSRF 712
Query: 437 NECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495
+ NL+G+G+FG+V+KG + VA+K+ NL A +SF +ECE + + HRNL+K+
Sbjct: 713 SSTNLIGSGNFGNVFKGLLGPENKLVAVKVLNLLKHGATKSFMAECETFKGIRHRNLVKL 772
Query: 496 LSSCSN-----PDFKALMW 509
++ CS+ DF+AL++
Sbjct: 773 ITVCSSLDSEGNDFRALVY 791
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 4.2e-58, P = 4.2e-58
Identities = 151/463 (32%), Positives = 237/463 (51%)
Query: 68 FLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGL 127
F+ +LTNC HL+ LS+G LGG LP I N S + G+IPQ+IGNL GL
Sbjct: 329 FIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGL 388
Query: 128 TLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187
L L N L G + ++G+L +L LSL N + G IP + +L + + L+ N G
Sbjct: 389 QRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEG 448
Query: 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVL 247
+PP L + + +L +G NKL +IP + + +L+ L
Sbjct: 449 IVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLSGSLPNDIGSLQNL 508
Query: 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
L L N+ SG + T+G + +E L L N F G IP ++ L+ + +DLS N+LSG
Sbjct: 509 VKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIP-NIRGLMGVRRVDLSNNDLSG 567
Query: 307 KIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCG-LPKFRVPPC-K 364
IP+ S L+ N S N GK+ KG+F+N + FGN LCG + ++ PC
Sbjct: 568 SIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNKNLCGGIKDLKLKPCLA 627
Query: 365 QGDSKSTKNVALIVLKYXXXXXXXXXXXXXXXXMYIRCRKRSTKKSDH-EDFLP--LATW 421
Q TK+ + + + C R +K+ + +P L +
Sbjct: 628 QEPPVETKHSSHLKKVAILVSIGIALLLLLVIASMVLCWFRKRRKNQQTNNLVPSKLEIF 687
Query: 422 R-RTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDS 479
+ SY D++ AT+ F+ N++G+GSFG+V+K + + VA+K+ N+Q A +SF +
Sbjct: 688 HEKISYGDLRNATNGFSSSNMVGSGSFGTVFKALLPTESKIVAVKVLNMQRRGAMKSFMA 747
Query: 480 ECEVLRNVCHRNLIKILSSCSNPDF-----KALMWGRLLNISI 517
ECE L++ HRNL+K+L++C++ DF +AL++ L N S+
Sbjct: 748 ECESLKDTRHRNLVKLLTACASTDFQGNEFRALIYEYLPNGSV 790
|
|
| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 8.1e-52, P = 8.1e-52
Identities = 150/438 (34%), Positives = 225/438 (51%)
Query: 74 NCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLF 133
N + L L L SN G +P + N + Q ++ L+G IP+E+ +++ L++L L
Sbjct: 501 NLKDLNILYLHSNGFTGRIPREMSNLTL-LQGLRMYSNDLEGPIPEEMFDMKLLSVLDLS 559
Query: 134 NNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIP-PC 192
NN +G I +L+ L LSL+ N GSIP L L L+ ++ N L+G IP
Sbjct: 560 NNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGEL 619
Query: 193 LASLTSLR-ELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLD 251
LASL +++ L+ +N LT +IP L LE Q K + LD
Sbjct: 620 LASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLD 679
Query: 252 LSRNQLSGDI-STIGALVDLE-TLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 309
S+N LSG I + +D+ +L+L+ N F G IP+S G++ L SLDLS NNL+G+IP
Sbjct: 680 FSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIP 739
Query: 310 KSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPC--KQGD 367
+SL LS LK + N L+G + G FKN +A GN LCG K + PC KQ
Sbjct: 740 ESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKK-PLKPCTIKQKS 798
Query: 368 SKSTKNVALIVLKYXXXXXXXXXXXXXXXXMYIRCRKRSTKKSDH--EDFLP----LATW 421
S +K +I++ + + C K+ KK ++ E LP
Sbjct: 799 SHFSKRTRVILI---ILGSAAALLLVLLLVLILTCCKKKEKKIENSSESSLPDLDSALKL 855
Query: 422 RRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRS---FD 478
+R ++++ATD FN N++G+ S +VYKG + D T +A+K+ NL+ E + S F
Sbjct: 856 KRFEPKELEQATDSFNSANIIGSSSLSTVYKGQLEDGTVIAVKVLNLK-EFSAESDKWFY 914
Query: 479 SECEVLRNVCHRNLIKIL 496
+E + L + HRNL+KIL
Sbjct: 915 TEAKTLSQLKHRNLVKIL 932
|
|
| TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 4.0e-50, P = 4.0e-50
Identities = 170/517 (32%), Positives = 240/517 (46%)
Query: 27 LSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNC-RHLKA----L 81
LS N F H NT NL + S +T+ RHL +
Sbjct: 247 LSYNHFVSHNNNT--NLEPFFASLANSSDLQELELAGN--SLGGEITSSVRHLSVNLVQI 302
Query: 82 SLGSNPLGGILPPVIGNF-SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT 140
L N + G +PP I N + + N + N L G IP+E+ L L + L NN L G
Sbjct: 303 HLDQNRIHGSIPPEISNLLNLTLLNLSS-NL-LSGPIPRELCKLSKLERVYLSNNHLTGE 360
Query: 141 ISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200
I +G + +L L + NNL GSIP +L + + L GN LSG +P L +L
Sbjct: 361 IPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLE 420
Query: 201 ELHLGSNKLTSSIP----SSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQ 256
L L N LT +IP S+L +L+ + VL V DLS N+
Sbjct: 421 ILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDM-VLSV-DLSSNE 478
Query: 257 LSGDIST-IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETL 315
LSG I +G+ + LE L+L+ N F +P S+G L L+ LD+S N L+G IP S +
Sbjct: 479 LSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQS 538
Query: 316 SHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKST---- 371
S LK N S N L G + KGSF + ESF G+ LCG K + CK+ +
Sbjct: 539 STLKHLNFSFNLLSGNVSDKGSFSKLTIESFLGDSLLCGSIK-GMQACKKKHKYPSVLLP 597
Query: 372 ---KNVALIVLKYXXXXXXXXXXXXXXXXMYIRCRKRSTKKSDHEDFLPLATWRRTSYLD 428
+A VL +Y + +K + D P + R SY
Sbjct: 598 VLLSLIATPVLCVFGYPLVQRSRFGKNLTVYAKEEVEDEEKQNQND--P--KYPRISYQQ 653
Query: 429 IQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFR-SFDSECEVLRNV 487
+ AT FN +L+G+G FG VYKG + + T VA+K+ + + F SF EC++L+
Sbjct: 654 LIAATGGFNASSLIGSGRFGHVYKGVLRNNTKVAVKVLDPKTALEFSGSFKRECQILKRT 713
Query: 488 CHRNLIKILSSCSNPDFKALMWGRLLNISITIIRRHL 524
HRNLI+I+++CS P F AL+ + N S+ RHL
Sbjct: 714 RHRNLIRIITTCSKPGFNALVLPLMPNGSL---ERHL 747
|
|
| TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
Identities = 123/393 (31%), Positives = 176/393 (44%)
Query: 1 MGWRWGNHSPHGDSPSIPHQI-YWVMDLSSNSFSGHIPNTFGN-------------LRHX 46
+G R GN+ SP + W D+ +NS +G IP T GN L
Sbjct: 193 LGLR-GNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGE 251
Query: 47 XXXXXXXXXXXXXXXXADQWS--FLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQ 104
+Q S S + + L L L N L G +PP++GN + + +
Sbjct: 252 IPFDIGFLQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGNLTFT-E 310
Query: 105 NFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGS 164
Y + KL G+IP E+GN+ L L L +N L G I P +G+L L L++ N+LEG
Sbjct: 311 KLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGP 370
Query: 165 IPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXX 224
IP L + + + GNK SG IP L S+ L+L SN + IP L +
Sbjct: 371 IPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLD 430
Query: 225 XXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGP 283
L+ L ++LSRN ++G + G L + + L++N GP
Sbjct: 431 TLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGP 490
Query: 284 IPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSA 343
IPE + L ++ L L NNL+G + LS L N SHN L G I +F FS
Sbjct: 491 IPEELNQLQNIILLRLENNNLTGNVGSLANCLS-LTVLNVSHNNLVGDIPKNNNFSRFSP 549
Query: 344 ESFFGNYALCGLPKFRVPPCKQGDSKSTKNVAL 376
+SF GN LCG + PC DS+ T V++
Sbjct: 550 DSFIGNPGLCG--SWLNSPCH--DSRRTVRVSI 578
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 524 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-45 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-42 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-32 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-23 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-15 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-11 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 6e-11 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-10 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 6e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 5e-08 | |
| pfam00069 | 260 | pfam00069, Pkinase, Protein kinase domain | 8e-08 | |
| cd05148 | 261 | cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro | 1e-07 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 2e-07 | |
| cd05085 | 250 | cd05085, PTKc_Fer, Catalytic domain of the Protein | 8e-07 | |
| cd00192 | 262 | cd00192, PTKc, Catalytic domain of Protein Tyrosin | 2e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-05 | |
| smart00219 | 257 | smart00219, TyrKc, Tyrosine kinase, catalytic doma | 4e-05 | |
| smart00221 | 258 | smart00221, STYKc, Protein kinase; unclassified sp | 5e-05 | |
| pfam07714 | 258 | pfam07714, Pkinase_Tyr, Protein tyrosine kinase | 6e-05 | |
| cd07830 | 283 | cd07830, STKc_MAK_like, Catalytic domain of Male g | 1e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 1e-04 | |
| cd06606 | 260 | cd06606, STKc_MAPKKK, Catalytic domain of the Prot | 2e-04 | |
| cd05049 | 280 | cd05049, PTKc_Trk, Catalytic domain of the Protein | 3e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-04 | |
| cd05122 | 253 | cd05122, PKc_STE, Catalytic domain of STE family P | 4e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 5e-04 | |
| cd06624 | 268 | cd06624, STKc_ASK, Catalytic domain of the Protein | 6e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 7e-04 | |
| cd05056 | 270 | cd05056, PTKc_FAK, Catalytic domain of the Protein | 0.001 | |
| cd05041 | 251 | cd05041, PTKc_Fes_like, Catalytic domain of Fes-li | 0.001 | |
| cd05045 | 290 | cd05045, PTKc_RET, Catalytic domain of the Protein | 0.002 | |
| cd06613 | 262 | cd06613, STKc_MAP4K3_like, Catalytic domain of Mit | 0.002 | |
| cd06631 | 265 | cd06631, STKc_YSK4, Catalytic domain of the Protei | 0.003 | |
| cd05057 | 279 | cd05057, PTKc_EGFR_like, Catalytic domain of Epide | 0.004 | |
| cd05038 | 284 | cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai | 0.004 | |
| cd06609 | 274 | cd06609, STKc_MST3_like, Catalytic domain of Mamma | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 6e-45
Identities = 150/505 (29%), Positives = 237/505 (46%), Gaps = 44/505 (8%)
Query: 14 SPSIPHQIYWV-----MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSF 68
S IP I+ + +DLS NS SG IP L++L L L NN T + +A
Sbjct: 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA----- 327
Query: 69 LSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNC---KLKGNIPQEIGNLR 125
LT+ L+ L L SN G +P +G + N + L G IP+ + +
Sbjct: 328 ---LTSLPRLQVLQLWSNKFSGEIPKNLGKHN----NLTVLDLSTNNLTGEIPEGLCSSG 380
Query: 126 GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKL 185
L L LF+N L G I ++G + LR + L+ N+ G +P + L L+Y + ++ N L
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440
Query: 186 SGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLK 245
G I + SL+ L L NK +P S S + + ++LS N + ++P + +L
Sbjct: 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLS 499
Query: 246 VLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNL 304
L L LS N+LSG+I + + L +L L+ NQ G IP S + L LDLS N L
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
Query: 305 SGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFR-VPPC 363
SG+IPK+L + L Q N SHN L G + G+F +A + GN LCG +PPC
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPC 619
Query: 364 KQGDSKSTKNVALIVLKYILPPIVSSVLIVIIIIMYIRCRKRS-TKKSDHEDFLPLATW- 421
K+ + T + + + +V + +V ++IR R K+ ++ED TW
Sbjct: 620 KR--VRKTPSWWFYITCTLGAFLV--LALVAFGFVFIRGRNNLELKRVENED----GTWE 671
Query: 422 ------RRTSYLDIQRATDEFNECNLLGTGSFGSVYKG-TISDWTNVAIKIFNLQLERAF 474
+ + + I E N++ G G+ YKG +I + +K N +
Sbjct: 672 LQFFDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEIN-DVNSIP 730
Query: 475 RSFDSECEVLRNVCHRNLIKILSSC 499
S ++ + + H N++K++ C
Sbjct: 731 SSEIAD---MGKLQHPNIVKLIGLC 752
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 1e-42
Identities = 114/311 (36%), Positives = 170/311 (54%), Gaps = 13/311 (4%)
Query: 24 VMDLSSNSFSGHIP-NTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALS 82
++LS+N SG IP + F L L L+ NN T S+ L+ L
Sbjct: 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT--GSIPRGSIPN--------LETLD 146
Query: 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS 142
L +N L G +P IG+FS S + L G IP + NL L L+L +N L G I
Sbjct: 147 LSNNMLSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205
Query: 143 PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLREL 202
+G++K L+ + L YNNL G IPY++ L + + L N L+G IP L +L +L+ L
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265
Query: 203 HLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIS 262
L NKL+ IP S++SL+ ++ ++LS NSL+ +P + L+ L +L L N +G I
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325
Query: 263 -TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQF 321
+ +L L+ L L SN+F G IP+++G +L LDLS NNL+G+IP+ L + +L +
Sbjct: 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385
Query: 322 NASHNRLEGKI 332
N LEG+I
Sbjct: 386 ILFSNSLEGEI 396
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 5e-32
Identities = 107/334 (32%), Positives = 154/334 (46%), Gaps = 51/334 (15%)
Query: 28 SSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNP 87
SS T N + S+ L+ N++ + S SA+ +++ ++L +N
Sbjct: 53 SSADVCLWQGITCNNSSRVVSIDLSGKNISGKIS--------SAIFRLPYIQTINLSNNQ 104
Query: 88 LGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGR 147
L G +P I S+S + N G+IP+ G++ L L L NN L+G I +G
Sbjct: 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS 162
Query: 148 LKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSN 207
L+ L L GN L G IP L +LTSL L L SN
Sbjct: 163 FSSLKVLDLG------------------------GNVLVGKIPNSLTNLTSLEFLTLASN 198
Query: 208 KLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGA 266
+L IP L ++ + I L N+L+ +P I L L LDL N L+G I S++G
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258
Query: 267 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHN 326
L +L+ L L N+ GPIP S+ SL L SLDLS N+LSG+IP+ + L +L+ + N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318
Query: 327 RLEGKILVKGSFKNFSAESFFGNYALCGLPKFRV 360
GKI V AL LP+ +V
Sbjct: 319 NFTGKIPV----------------ALTSLPRLQV 336
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-23
Identities = 75/238 (31%), Positives = 114/238 (47%), Gaps = 16/238 (6%)
Query: 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLK 157
N SA + C N + + L +++G IS + RL ++ ++L
Sbjct: 52 NSSADVCLWQGITCN----------NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS 101
Query: 158 YNNLEGSIPYDLCHL--KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPS 215
N L G IP D+ L Y + L+ N +G IP S+ +L L L +N L+ IP+
Sbjct: 102 NNQLSGPIPDDIFTTSSSLRY-LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN 158
Query: 216 SLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLS 274
+ S + +++L N L +P+++ L L L L+ NQL G I +G + L+ +
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218
Query: 275 LASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
L N G IP +G L SL LDL NNL+G IP SL L +L+ N+L G I
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 40/213 (18%)
Query: 226 INLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIS-TIGALVDLETLSLASNQFQGPI 284
+ L + L +P++I L+ L+ ++LS N + G+I ++G++ LE L L+ N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 285 PESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAE 344
PES+G L SL L+L+GN+LSG++P +L G L+ + NF+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL-----------------GGRLLHRASFNFT-- 523
Query: 345 SFFGNYALCGLPKFRVPPCKQGDSKSTK-NVALIVLKYILPPIVSSVLIVIIIIMYIRCR 403
N LCG+P R C S K +A V SV + ++I +
Sbjct: 524 ---DNAGLCGIPGLR--ACGPHLSVGAKIGIAFGV----------SVAFLFLVICAMCWW 568
Query: 404 KRSTK----KSDHEDFLPLATWRRTSYLDIQRA 432
KR + P A R D+Q
Sbjct: 569 KRRQNILRAQRIAAREAPYAKARTHFSRDVQMT 601
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 37/87 (42%), Positives = 51/87 (58%)
Query: 153 GLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSS 212
GL L L G IP D+ L+ + I L+GN + G+IPP L S+TSL L L N S
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 213 IPSSLWSLEYILMINLSSNSLNDSLPS 239
IP SL L + ++NL+ NSL+ +P+
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 110 NCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDL 169
N L+G IP +I LR L ++L N + G I P++G + L L L YN+ GSIP L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Query: 170 CHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLT 210
L + + L GN LSG +P L R LH S T
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGG----RLLHRASFNFT 523
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 6e-11
Identities = 71/205 (34%), Positives = 107/205 (52%), Gaps = 6/205 (2%)
Query: 110 NCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDL 169
N + E+ L LT L L NN++ L+ L L N +E S+P L
Sbjct: 101 NLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPL 159
Query: 170 CHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLS 229
+L + + L+ N LS +P L++L++L L L NK+ S +P + L + ++LS
Sbjct: 160 RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLS 217
Query: 230 SNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVG 289
+NS+ L S++ LK L L+LS N+L +IG L +LETL L++NQ S+G
Sbjct: 218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLG 274
Query: 290 SLISLESLDLSGNNLSGKIPKSLET 314
SL +L LDLSGN+LS +P
Sbjct: 275 SLTNLRELDLSGNSLSNALPLIALL 299
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 5/206 (2%)
Query: 135 NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA 194
++ + ++ RL L LS + L +L + + L N+L +I L
Sbjct: 56 SNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLL-NLLPLPSLDLNLNRLRSNISELLE 114
Query: 195 SLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254
LT+L L L +N +T P + ++LS N + LPS ++ L L+ LDLS
Sbjct: 115 -LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172
Query: 255 NQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLET 314
N LS + L +L L L+ N+ +P + L +LE LDLS N++ ++ SL
Sbjct: 173 NDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN 230
Query: 315 LSHLKQFNASHNRLEGKILVKGSFKN 340
L +L S+N+LE G+ N
Sbjct: 231 LKNLSGLELSNNKLEDLPESIGNLSN 256
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 130 LSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHI 189
L L N L G I + +L+ L+ ++L N++ G+IP L + + + L+ N +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 190 PPCLASLTSLRELHLGSNKLTSSIPSSL 217
P L LTSLR L+L N L+ +P++L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 6e-09
Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 9/222 (4%)
Query: 111 CKLKGNIPQEIGNLRGLTLLSLFNNDLNG--TISPTMGRLKQLRGLSLKYNNLEGSIPYD 168
+ +L L L L + S + L L L L N L +I
Sbjct: 53 NLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISEL 112
Query: 169 LCHLKLMYGIRLTGNKLSGHIPPCLASLTS-LRELHLGSNKLTSSIPSSLWSLEYILMIN 227
L L + + L N ++ IPP + L S L+EL L NK+ S+PS L +L + ++
Sbjct: 113 L-ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLD 169
Query: 228 LSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPES 287
LS N L+D LP + L L LDLS N++S I L LE L L++N + S
Sbjct: 170 LSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS 227
Query: 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
+ +L +L L+LS NN +P+S+ LS+L+ + S+N++
Sbjct: 228 LSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNNQIS 268
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 80 ALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG 139
L L + L G +P I Q+ ++GNIP +G++ L +L L N NG
Sbjct: 422 GLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480
Query: 140 TISPTMGRLKQLRGLSLKYNNLEGSIP 166
+I ++G+L LR L+L N+L G +P
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 5e-08
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 442 LGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSC 499
LG G FG+VY VAIKI + E E+L+ + H N++K+
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60
Query: 500 SNPDFKAL 507
+ + L
Sbjct: 61 EDENHLYL 68
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 8e-08
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 442 LGTGSFGSVYKGT-ISDWTNVAIKIFNLQLER--AFRSFDSECEVLRNVCHRNLIKILSS 498
LG+GSFG+VYK VA+KI + E+ ++ E +LR + H N+++++ +
Sbjct: 7 LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDA 66
Query: 499 CSNPD 503
+ D
Sbjct: 67 FEDKD 71
|
Length = 260 |
| >gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH 489
+R +EF LG+G FG V++G + VAIKI + F E + L+ + H
Sbjct: 2 ERPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRH 61
Query: 490 RNLIKILSSCS 500
++LI + + CS
Sbjct: 62 KHLISLFAVCS 72
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 440 NLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFR-SFDSECEVLRNVCHRNLIKILS 497
LG GSFG VY VAIK+ + + R E ++L+ + H N++++
Sbjct: 5 EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYD 64
Query: 498 SCSNPDF 504
+ D
Sbjct: 65 VFEDEDK 71
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 8e-07
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 441 LLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFR-SFDSECEVLRNVCHRNLIKILSSC 499
LLG G+FG V+KGT+ D T VA+K L + + F SE +L+ H N++K++ C
Sbjct: 2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61
Query: 500 S 500
+
Sbjct: 62 T 62
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250 |
| >gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 440 NLLGTGSFGSVYKGTISD----WTNVAIKIFNLQLERAFRS-FDSECEVLRNVCHRNLIK 494
LG G+FG VYKG + T VA+K R F E V++ + H N+++
Sbjct: 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60
Query: 495 ILSSCSNPD 503
+L C+ +
Sbjct: 61 LLGVCTEEE 69
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 270 LETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
L++L L++N+ + L +L+ LDLSGNNL+ P++ L L+ + S N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 442 LGTGSFGSVYKGT---ISDWT--NVAIKIFNL-QLERAFRSFDSECEVLRNVCHRNLIKI 495
LG G+FG VYKG VA+K E+ F E ++R + H N++K+
Sbjct: 7 LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKL 66
Query: 496 LSSCSNPD 503
L C+ +
Sbjct: 67 LGVCTEEE 74
|
Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257 |
| >gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 442 LGTGSFGSVYKGTISDW-----TNVAIKIFNL-QLERAFRSFDSECEVLRNVCHRNLIKI 495
LG G+FG VYKGT+ VA+K E+ F E ++R + H N++K+
Sbjct: 7 LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKL 66
Query: 496 LSSCSNPD 503
L C+ +
Sbjct: 67 LGVCTEEE 74
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258 |
| >gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 6e-05
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 442 LGTGSFGSVYKGTISDW-----TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKI 495
LG G+FG VYKGT+ T VA+K E F E +++ + H N++++
Sbjct: 7 LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRL 66
Query: 496 LSSCSNPD 503
L C+ +
Sbjct: 67 LGVCTQGE 74
|
Length = 258 |
| >gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 442 LGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-------CHRNLI 493
LG G+FGSVY VAIK ++++ F S++ EC LR V H N++
Sbjct: 7 LGDGTFGSVYLARNKETGELVAIK----KMKKKFYSWE-ECMNLREVKSLRKLNEHPNIV 61
Query: 494 KIL 496
K+
Sbjct: 62 KLK 64
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 68/312 (21%), Positives = 100/312 (32%), Gaps = 65/312 (20%)
Query: 18 PHQIYWVMDLSSNSFS-GHIPNTFGNLRHLSSLL-LTWNNLTTESSLADQWSFLSALTNC 75
V+ L N+ LR SL L + T S L LT
Sbjct: 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80
Query: 76 RHLKALSLGSNPLGGILPPVIGNFSASF--QNFYAFNCKL-KGNIPQEIGNLR----GLT 128
L+ L L N LG V+ + S Q N L + L+ L
Sbjct: 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140
Query: 129 LLSLFNNDLNGT----ISPTMGRLKQLRGLSLKYNNLEGS-IPY------DLCHLKLMYG 177
L L N L G ++ + + L+ L+L N + + I C+L++
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV--- 197
Query: 178 IRLTGNKL----SGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSL 233
+ L N L + + LASL SL L+LG N LT + ++L
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL---------------- 241
Query: 234 NDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLIS 293
+ + L L LS N ++ D + + E S
Sbjct: 242 ---ASALLSPNISLLTLSLSCNDITDD---------------GAKDLAEVLAEKE----S 279
Query: 294 LESLDLSGNNLS 305
L LDL GN
Sbjct: 280 LLELDLRGNKFG 291
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 440 NLLGTGSFGSVYKGTISDWTN--VAIK--IFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495
LLG GSFGSVY D T +A+K + E + + E +L ++ H N+++
Sbjct: 6 ELLGRGSFGSVYLALDKD-TGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRY 64
Query: 496 LSSCSNPDFKAL 507
S + + L
Sbjct: 65 YGSERDEEKNTL 76
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260 |
| >gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 442 LGTGSFGSVYKGTIS------DWTNVAIKIF-NLQLERAFRSFDSECEVLRNVCHRNLIK 494
LG G+FG V+ G D VA+K A + F+ E E+L N H N++K
Sbjct: 13 LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72
Query: 495 ILSSCSNPD 503
C+ D
Sbjct: 73 FYGVCTEGD 81
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 198 SLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257
+L+ L L +N+LT + L + +++LS N+L P L LR LDLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 442 LGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G G FG VYK VAIK+ L+ + +E ++L+ H N++K S
Sbjct: 8 IGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGS 65
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 5e-04
Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 20/258 (7%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+DL +N+ + P +L L L+ N + + S L N +LK L L
Sbjct: 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS---------PLRNLPNLKNLDL 170
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N L LP ++ N ++ N K+ ++P EI L L L L NN + +
Sbjct: 171 SFNDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS 226
Query: 144 TMGRLKQLRGLSLKYNNLEGSI--PYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201
++ LK L GL L N LE +L +L+ + L+ N++S L SLT+LRE
Sbjct: 227 SLSNLKNLSGLELSNNKLEDLPESIGNLSNLET---LDLSNNQIS--SISSLGSLTNLRE 281
Query: 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261
L L N L++++P L + ++ +L L +L +
Sbjct: 282 LDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341
Query: 262 STIGALVDLETLSLASNQ 279
S + +L +L TL A ++
Sbjct: 342 SILESLNNLWTLDNALDE 359
|
Length = 394 |
| >gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 427 LDIQRATDEFNECNLLGTGSFGSVYKG-TISDWTNVAIKIFNLQLERAFRSFDSECEVLR 485
L+ + DE E +LG G++G VY +S +AIK + R + E +
Sbjct: 1 LEYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHS 60
Query: 486 NVCHRNLIKILSSCS-NPDFKALM 508
+ HRN+++ L S S N FK M
Sbjct: 61 YLKHRNIVQYLGSDSENGFFKIFM 84
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 7e-04
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 247 LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNL 304
L+ LDLS N+L+ L +L+ L L+ N PE+ L SL SLDLSGNNL
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 429 IQRATDEFNECNLLGTGSFGSVYKGT----ISDWTNVAIKIFNLQLERAFRS-FDSECEV 483
IQR C +G G FG VY+G ++ VA+K + R F E +
Sbjct: 3 IQREDITLGRC--IGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYI 60
Query: 484 LRNVCHRNLIKILSSCSNP 502
+R H +++K++ +
Sbjct: 61 MRQFDHPHIVKLIGVITEN 79
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270 |
| >gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 441 LLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFR-SFDSECEVLRNVCHRNLIKILSSC 499
+G G+FG VYKG + T VA+K L + F E E+L+ H N++K++ C
Sbjct: 2 KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVC 61
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251 |
| >gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 442 LGTGSFGSVYKGT------ISDWTNVAIKIFNLQLERA-FRSFDSECEVLRNVCHRNLIK 494
LG G FG V K T + +T VA+K+ + R SE +L+ V H ++IK
Sbjct: 8 LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIK 67
Query: 495 ILSSCS 500
+ +CS
Sbjct: 68 LYGACS 73
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290 |
| >gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKG-TISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNL 492
+++ +G+G++G VYK I+ VAIK+ L+ F E +L+ H N+
Sbjct: 3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNI 62
Query: 493 IKILSS 498
+ S
Sbjct: 63 VAYFGS 68
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262 |
| >gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQ------LERAFRSFDSECEVLRNVC 488
E+ + +LG G++G+VY G + +A+K L E+ + E ++L+++
Sbjct: 1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLK 60
Query: 489 HRNLIKILSSC 499
H N+++ L +C
Sbjct: 61 HVNIVQYLGTC 71
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265 |
| >gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 435 EFNECNLLGTGSFGSVYKGTISDWT--------NVAIKIFNLQLER-AFRSFDSECEVLR 485
E + +LG+G+FG+VYKG W VAIK+ + A + E V+
Sbjct: 8 ELEKIKVLGSGAFGTVYKGV---WIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMA 64
Query: 486 NVCHRNLIKILSSC 499
+V H +++++L C
Sbjct: 65 SVDHPHVVRLLGIC 78
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279 |
| >gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 440 NLLGTGSFGSVYKGTISDWTN--------VAIKIFNLQLERAFRS-FDSECEVLRNVCHR 490
LG G FG V + VA+K N E RS F+ E E+LR + H
Sbjct: 10 KQLGEGHFGKVELCR---YDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHE 66
Query: 491 NLIKILSSCSNPDFKAL 507
N++K C P ++L
Sbjct: 67 NIVKYKGVCEKPGGRSL 83
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284 |
| >gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNL 468
+ F +G GSFG VYK TN VAIK+ +L
Sbjct: 1 ELFTLLECIGKGSFGEVYKAIDKR-TNQVVAIKVIDL 36
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 524 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.93 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.9 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.89 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.89 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.85 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.84 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.82 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.8 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.79 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.75 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.73 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.71 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.7 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.62 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.58 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.54 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.51 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.51 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.5 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.5 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.49 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.48 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.47 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.45 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.42 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.41 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.41 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.4 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.39 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.39 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.38 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.38 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 99.36 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 99.36 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.36 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 99.35 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.35 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 99.34 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.32 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.31 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.31 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.3 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.3 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 99.3 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.29 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.29 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.28 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.28 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 99.27 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.27 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.26 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.26 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.26 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.26 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 99.26 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.26 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.25 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.25 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.25 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.25 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.25 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.25 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.24 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.24 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.24 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.23 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.23 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.23 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.23 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.23 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.22 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 99.22 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.22 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 99.22 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.22 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.22 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.21 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.2 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.2 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.2 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.2 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 99.2 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 99.2 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.19 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.19 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.19 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.19 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.19 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.19 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 99.18 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.18 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.18 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 99.18 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.18 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 99.17 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.17 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.17 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.17 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.17 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.17 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.16 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.16 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.16 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.16 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.16 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.16 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 99.15 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.15 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.15 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.15 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 99.15 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.15 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.15 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.15 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.15 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 99.14 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.14 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.14 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.14 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.13 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.13 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.13 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.13 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 99.13 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.13 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.13 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.13 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.12 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.12 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.12 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 99.12 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.12 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.12 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.12 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.12 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.12 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.12 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.12 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.11 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.11 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.11 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.11 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.11 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.11 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 99.1 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.1 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 99.1 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.09 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.09 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.09 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.09 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.09 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.09 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.09 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.09 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.09 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.09 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.09 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.09 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.09 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.09 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.08 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.08 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.08 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.08 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.08 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.08 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.08 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.08 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.08 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.08 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.07 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.07 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.07 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.07 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.07 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.07 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.07 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.07 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.07 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.06 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.06 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 99.06 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 99.06 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.06 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.06 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.06 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.05 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.05 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.05 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.05 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.05 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.05 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.05 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.05 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.05 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.05 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.05 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.05 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.05 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.04 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.04 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.04 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.04 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.04 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 99.04 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.04 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.04 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.04 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.04 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.03 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.03 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.03 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.03 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 99.03 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.03 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.03 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.03 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.03 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.03 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.03 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.03 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.03 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 99.03 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.03 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.02 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.02 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.02 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.02 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.02 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.02 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.02 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 99.02 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.02 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.02 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.01 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.01 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.01 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.01 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.01 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.01 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.01 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.0 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.0 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.0 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.0 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.0 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.0 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.0 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.0 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.0 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.0 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.0 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 98.99 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 98.99 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 98.99 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 98.99 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 98.99 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 98.99 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 98.99 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 98.99 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 98.98 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 98.98 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 98.98 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 98.98 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 98.98 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 98.98 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 98.98 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 98.97 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 98.97 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 98.97 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 98.97 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 98.97 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 98.97 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 98.97 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 98.97 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 98.96 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 98.96 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 98.96 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 98.96 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 98.96 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 98.96 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 98.96 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 98.96 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 98.96 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 98.95 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 98.95 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 98.95 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 98.95 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 98.94 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 98.94 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 98.94 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 98.94 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 98.93 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 98.93 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 98.93 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.93 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 98.93 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 98.92 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 98.92 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 98.92 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 98.92 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 98.92 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 98.92 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 98.92 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 98.91 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 98.91 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 98.91 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 98.91 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 98.91 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.9 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 98.9 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 98.9 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 98.9 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 98.9 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 98.9 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 98.89 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.89 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 98.89 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 98.89 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 98.89 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 98.89 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 98.89 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 98.88 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 98.88 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 98.88 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 98.88 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 98.87 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 98.87 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 98.87 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 98.86 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 98.86 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 98.86 | |
| PRK10345 | 210 | hypothetical protein; Provisional | 98.86 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 98.85 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 98.84 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 98.84 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 98.84 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 98.84 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 98.83 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 98.83 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 98.82 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 98.82 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 98.82 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 98.82 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.81 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 98.81 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 98.81 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 98.81 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 98.81 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 98.8 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 98.8 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 98.8 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 98.79 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 98.79 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 98.79 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 98.79 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 98.78 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 98.78 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 98.78 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 98.77 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 98.76 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 98.76 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 98.75 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 98.75 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 98.75 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 98.75 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 98.75 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 98.75 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 98.75 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 98.74 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 98.73 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 98.73 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 98.73 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 98.73 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 98.73 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 98.73 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 98.73 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 98.72 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 98.72 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.71 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 98.71 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 98.7 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 98.69 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 98.69 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 98.69 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 98.69 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 98.68 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 98.68 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 98.67 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 98.67 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 98.66 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 98.65 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 98.65 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 98.65 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.65 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 98.64 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 98.63 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 98.62 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 98.6 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 98.58 | |
| PTZ00284 | 467 | protein kinase; Provisional | 98.58 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 98.58 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 98.56 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 98.55 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 98.54 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 98.54 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 98.53 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 98.52 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 98.51 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 98.5 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 98.49 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 98.48 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 98.47 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 98.46 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 98.45 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 98.44 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.43 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 98.42 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 98.41 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 98.38 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.38 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 98.38 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 98.37 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.34 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.26 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.24 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.23 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.23 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 98.21 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 98.18 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 98.17 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 98.15 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 98.14 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 98.1 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 98.08 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.08 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 98.03 | |
| smart00090 | 237 | RIO RIO-like kinase. | 98.02 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.02 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.99 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 97.99 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 97.98 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 97.97 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 97.97 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.95 | |
| cd05120 | 155 | APH_ChoK_like Aminoglycoside 3'-phosphotransferase | 97.93 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.92 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 97.86 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 97.85 | |
| TIGR01982 | 437 | UbiB 2-polyprenylphenol 6-hydroxylase. This model | 97.82 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.82 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 97.8 | |
| PRK04750 | 537 | ubiB putative ubiquinone biosynthesis protein UbiB | 97.78 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 97.78 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 97.69 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 97.68 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 97.66 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 97.62 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.55 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.5 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 97.5 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 97.49 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 97.44 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.44 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 97.36 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.31 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 97.27 | |
| PRK01723 | 239 | 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | 97.25 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.09 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.09 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 96.89 | |
| cd05154 | 223 | ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an | 96.87 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 96.72 | |
| cd05151 | 170 | ChoK Choline Kinase (ChoK). The ChoK subfamily is | 96.46 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.28 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 96.12 | |
| COG0661 | 517 | AarF Predicted unusual protein kinase [General fun | 95.51 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.28 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.17 | |
| COG2112 | 201 | Predicted Ser/Thr protein kinase [Signal transduct | 95.12 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 95.06 | |
| KOG3741 | 655 | consensus Poly(A) ribonuclease subunit [RNA proces | 94.79 | |
| KOG1235 | 538 | consensus Predicted unusual protein kinase [Genera | 94.62 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=492.16 Aligned_cols=487 Identities=28% Similarity=0.422 Sum_probs=332.3
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCC------------------CccccCccccCCCCCCCCEE
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESS------------------LADQWSFLSALTNCRHLKAL 81 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~------------------~~~~~~~~~~~~~l~~L~~L 81 (524)
++|+.|++++|++++.+|..+.++++|++|++++|.++.... +.+..| ..+.++++|+.|
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L 337 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQVL 337 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC--hhHhcCCCCCEE
Confidence 566666666666666666666666666666666666543210 001112 334445555555
Q ss_pred EccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcc
Q 040301 82 SLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNL 161 (524)
Q Consensus 82 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 161 (524)
++++|.+.+.+|..+..+. +|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 338 ~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred ECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 5555555555555555554 555555555555555555555555555555555555555555566666666666666666
Q ss_pred cccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCc
Q 040301 162 EGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI 241 (524)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 241 (524)
++.+|..+..++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++.+..|..+
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhh
Confidence 66666666666666666666666666666666666777777777777666655544 34678888888888888888888
Q ss_pred cCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCe
Q 040301 242 QTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQ 320 (524)
Q Consensus 242 ~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 320 (524)
..+++|+.|++++|.+.+.. ..+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 89999999999999998654 67888999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCccccCCCCcCCCCCcccccCCCCCCCCC-CCCCCCCCCCCccCccchheeeeeeccchhHHHHHHHHHHHhh
Q 040301 321 FNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLP-KFRVPPCKQGDSKSTKNVALIVLKYILPPIVSSVLIVIIIIMY 399 (524)
Q Consensus 321 l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~~lc~~p-~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (524)
+++++|++.+.+|..+.+..+....+.||+.+|+.+ ....++|.... .. ..+. ++++++ ++++++++++++++
T Consensus 576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~---~~-~~~~-~~~~~~-~~~~~~~~~~~~~~ 649 (968)
T PLN00113 576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVR---KT-PSWW-FYITCT-LGAFLVLALVAFGF 649 (968)
T ss_pred EeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCcccc---cc-ceee-eehhHH-HHHHHHHHHHHHHH
Confidence 999999999999988888888888999999999854 34556775321 11 1111 222222 22222222222222
Q ss_pred hhhhcccCCCCCC-C--Cccc--c----ccccccchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc
Q 040301 400 IRCRKRSTKKSDH-E--DFLP--L----ATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ 469 (524)
Q Consensus 400 ~~~~~~~~~~~~~-~--~~~~--~----~~~~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~ 469 (524)
++++++++.+.++ + .... . .....++++++ ...+...+.+|+|+||.||+|+. .++..||||+++..
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~ 726 (968)
T PLN00113 650 VFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDI---LSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDV 726 (968)
T ss_pred HHHHhhhcccccccccccccccccccccccchhhhHHHH---HhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCC
Confidence 3333322211111 1 0000 0 00122333443 34567778999999999999996 57889999998643
Q ss_pred chHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 470 LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 470 ~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.. ...+|++.+++++|||||+++|+|.+++..|+|||||++|+|.+++++
T Consensus 727 ~~----~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~ 776 (968)
T PLN00113 727 NS----IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN 776 (968)
T ss_pred cc----ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc
Confidence 32 112468899999999999999999999999999999999999999864
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=346.51 Aligned_cols=330 Identities=36% Similarity=0.511 Sum_probs=231.9
Q ss_pred CCCCCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCC
Q 040301 11 HGDSPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGG 90 (524)
Q Consensus 11 ~~~~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 90 (524)
.|.+|....++|++|||++|.+++.+|..|+++++|++|+|++|.+.+. .| ..+.++++|++|+|++|.+.+
T Consensus 131 ~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~------~p--~~~~~l~~L~~L~L~~n~l~~ 202 (968)
T PLN00113 131 TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK------IP--NSLTNLTSLEFLTLASNQLVG 202 (968)
T ss_pred ccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc------CC--hhhhhCcCCCeeeccCCCCcC
Confidence 3444555556777777777777777777777777777777777776532 23 667777777777777777777
Q ss_pred CCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCcccc
Q 040301 91 ILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC 170 (524)
Q Consensus 91 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 170 (524)
.+|..+..+. +|+.|++++|.+.+.+|..|+++++|++|++++|.+.+..|..++++++|+.|++++|.+.+.+|..+.
T Consensus 203 ~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 281 (968)
T PLN00113 203 QIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281 (968)
T ss_pred cCChHHcCcC-CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh
Confidence 7777777776 777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEE
Q 040301 171 HLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVL 250 (524)
Q Consensus 171 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 250 (524)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred EcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCc
Q 040301 251 DLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329 (524)
Q Consensus 251 ~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~ 329 (524)
++++|.+.+.. ..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++..|..+..++.|+.+++++|.++
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 77777776433 44555566666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccCCC-CcCCCCCcccccCC
Q 040301 330 GKILVK-GSFKNFSAESFFGN 349 (524)
Q Consensus 330 ~~~~~~-~~~~~~~~~~~~~n 349 (524)
+.++.. ..+..+..+++.+|
T Consensus 442 ~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 442 GRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred CccChhhccCCCCcEEECcCc
Confidence 554431 22334444444444
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=289.71 Aligned_cols=325 Identities=22% Similarity=0.205 Sum_probs=247.1
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
+++.|+|.+|.|+..-.+.++.++.|+.||||.|.|+.++. .+|..-.++++|+|++|.|+....+.|..+.
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~--------~sfp~~~ni~~L~La~N~It~l~~~~F~~ln 197 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK--------PSFPAKVNIKKLNLASNRITTLETGHFDSLN 197 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC--------CCCCCCCCceEEeeccccccccccccccccc
Confidence 46667777776665556666667777777777777776654 5565556788888888888877777777777
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|..|.|+.|+++...+..|.+|++|+.|+|..|+|.-....+|.++++|+.|.|..|+|.......|..+.+++.|+|
T Consensus 198 -sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 198 -SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred -hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 7888888888888777777777888888888888877444567788888888888888888777778888888888888
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
+.|++...-..++.++++|++|++++|.|...-++.+...++|+.|+|++|+++...++.|..+..|+.|+|++|.+..+
T Consensus 277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence 88888777777788888888888888888877677777788888888888888877777888888888888888888766
Q ss_pred c-ccccccCCCCEEEccCCcccCCCc---ccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCC
Q 040301 261 I-STIGALVDLETLSLASNQFQGPIP---ESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKG 336 (524)
Q Consensus 261 ~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~ 336 (524)
. ..|..+.+|+.|+|++|.+++.+. ..|..+++|+.|++.+|++..+.-..|..++.|+.||+.+|++...-+..-
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 6 667788889999999998876543 346778899999999999986666788889999999999998865444332
Q ss_pred cCCCCCcccccCCCCCCC
Q 040301 337 SFKNFSAESFFGNYALCG 354 (524)
Q Consensus 337 ~~~~~~~~~~~~n~~lc~ 354 (524)
.-..+..+-+.....+|+
T Consensus 437 e~m~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 437 EPMELKELVMNSSSFLCD 454 (873)
T ss_pred ccchhhhhhhcccceEEe
Confidence 222444444444455554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=281.26 Aligned_cols=303 Identities=22% Similarity=0.210 Sum_probs=179.0
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
++..+.||+|+|++....+..|-++++|+++.+..|.++.++.+. ....+|+.|+|.+|.|+..-...+..
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~---------~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG---------HESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc---------ccccceeEEeeeccccccccHHHHHh
Confidence 467788999999999888999999999999999999999886422 22334666666666666555555555
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
++ .|+.|||+.|.++...-.+|..-.++++|+|++|+|+..-.+.|..+.+|..|.|+.|+++...+..|++++.|+.|
T Consensus 148 l~-alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 148 LP-ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred Hh-hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 55 66666666666664444445555566666666666665555666666666666666666664444555556666666
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
+|..|+|.......|.++++|+.|.|..|.+...-...|..+.++++|+|..|++...-.+++-++..|+.|++++|.|.
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 66666665333444555555555555555555444445555555555555555555444444555555555555555554
Q ss_pred ccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccc
Q 040301 259 GDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 259 ~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
.+- +.+..+++|++|+|++|+++...+..|..+..|++|+|++|.++......|..+++|+.||++.|.+.+.
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence 433 4444445555555555555544444444444444444444444433333444444444444444444433
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-33 Score=270.65 Aligned_cols=346 Identities=24% Similarity=0.314 Sum_probs=246.0
Q ss_pred CCccCCCCCCCC-CCCc--CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCC-----------------
Q 040301 2 GWRWGNHSPHGD-SPSI--PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESS----------------- 61 (524)
Q Consensus 2 ~~~~~~~~~~~~-~~~~--~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~----------------- 61 (524)
|..+-+.+-+|+ .|+. .+++++.|-|.+.++. .+|+.++.+.+|+.|.+++|++..+.+
T Consensus 11 GvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred cccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc
Confidence 444555554433 3544 4566777777777776 677777777777777777777665520
Q ss_pred C-ccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCccc
Q 040301 62 L-ADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT 140 (524)
Q Consensus 62 ~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 140 (524)
+ ...+| ..+-.+..|+.|||++|++. ..|..+.... ++..|+|++|+|..+...-|.+|+.|-.||||+|++. .
T Consensus 90 LKnsGiP--~diF~l~dLt~lDLShNqL~-EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 90 LKNSGIP--TDIFRLKDLTILDLSHNQLR-EVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred cccCCCC--chhcccccceeeecchhhhh-hcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-h
Confidence 0 01233 45555666666666666666 4555565555 6666666666665444444556666666666666665 4
Q ss_pred CCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcc-cccCCccccCCCCCCEEEccCCcCCCccChhccC
Q 040301 141 ISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKL-SGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWS 219 (524)
Q Consensus 141 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 219 (524)
+|+....+..|+.|+|++|.+.-..-..+..+++|+.|.+++.+- ...+|.++..+.+|..+|++.|.+. .+|+.+..
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 455566666666666666666533334445555666666666542 2356778888899999999999998 78999999
Q ss_pred CCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccC-CCcccccCCCCCCEEe
Q 040301 220 LEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQG-PIPESVGSLISLESLD 298 (524)
Q Consensus 220 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~ 298 (524)
+++|+.|+|++|+++ .+....+...+|++|++|+|+++..|..++.++.|+.|++.+|++.- -+|..++.+..|+.+.
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 999999999999998 45566677889999999999999999999999999999999998662 4789999999999999
Q ss_pred CCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCCCCCcccccCCCCCCCCC
Q 040301 299 LSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLP 356 (524)
Q Consensus 299 l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~~lc~~p 356 (524)
.++|.+. ..|+.+..+..|+.|.++.|.+.......-.+..+..+++-.|+.+.-.|
T Consensus 323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 9999998 88999999999999999999987544333446677788888887665433
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-31 Score=254.54 Aligned_cols=294 Identities=28% Similarity=0.371 Sum_probs=254.4
Q ss_pred CCccEEEccCCccccc-CCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 20 QIYWVMDLSSNSFSGH-IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
+.|+.+++..|++... +|..+..+..|..||||+|+++..+ ..+...+++-+|+|++|+|..++.+.|.+
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP---------~~LE~AKn~iVLNLS~N~IetIPn~lfin 148 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP---------TNLEYAKNSIVLNLSYNNIETIPNSLFIN 148 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcc---------hhhhhhcCcEEEEcccCccccCCchHHHh
Confidence 5677888888887733 6778888999999999999998764 77888899999999999999777788888
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc-ccCCccccCCCCCCE
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE-GSIPYDLCHLKLMYG 177 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~ 177 (524)
+. .|-.|+|++|++. .+|..+..|.+|++|.|++|.+....-..+-.+++|+.|.+++.+-+ ..+|.++..+.+|..
T Consensus 149 Lt-DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 149 LT-DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred hH-hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 87 8999999999998 56667899999999999999887544445556778888888887765 468999999999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
++++.|.+. .+|+.+.++++|+.|+|++|+++ .+.-....+.+|++|+|+.|+++ .+|..+..++.|+.|++.+|++
T Consensus 227 vDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 227 VDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence 999999998 78999999999999999999998 55556677889999999999998 6899999999999999999986
Q ss_pred --ccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCc
Q 040301 258 --SGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329 (524)
Q Consensus 258 --~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~ 329 (524)
.|+|+.++.+.+|+++..++|.+. ..|..+..|++|+.|.|+.|++- ..|+.+.-++.|+.||+..|+=-
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 577788999999999999999998 89999999999999999999988 78999999999999999999743
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-28 Score=226.92 Aligned_cols=299 Identities=26% Similarity=0.383 Sum_probs=188.8
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccc---------------cCccccCCCCCCCCEEEcc
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQ---------------WSFLSALTNCRHLKALSLG 84 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------~~~~~~~~~l~~L~~L~l~ 84 (524)
+.|+.||.-.|-++ .+|..++.+.+|+.|+|.+|++...+.+.|- +| -...+++.+|.+|||+
T Consensus 183 ~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lp-ae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLP-AEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhH-HHHhcccccceeeecc
Confidence 45555555555554 5555555555555555555555554321110 00 0223456666666666
Q ss_pred CCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCC----------------------
Q 040301 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS---------------------- 142 (524)
Q Consensus 85 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------- 142 (524)
+|+++ ..|+.+..+. +|+.|++++|.++ ..|.+++++ +|+.|-+.+|.+..+-.
T Consensus 261 dNklk-e~Pde~clLr-sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 261 DNKLK-EVPDEICLLR-SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred ccccc-cCchHHHHhh-hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 66666 5566666665 6666666666666 455566666 66666666665431000
Q ss_pred -------------------ccccCCCCCCeEecccCcccccCCccccCCC---CCCEEEccCCcccccCCccccCCCCC-
Q 040301 143 -------------------PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLK---LMYGIRLTGNKLSGHIPPCLASLTSL- 199 (524)
Q Consensus 143 -------------------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L- 199 (524)
.....+.+.+.|++++-+++ .+|+.+..-- -...++++.|++. .+|..+..+..+
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv 414 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV 414 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH
Confidence 00111223445555555555 3443332222 2455566666665 455444444433
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCc
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQ 279 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~ 279 (524)
+.+.+++|.+. .+|..++.+++|..|+|++|-+. .+|..++.+..|+.|+++.|.+...|.....+..++.+-.++|+
T Consensus 415 T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 415 TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc
Confidence 23444555543 66777788888888888888887 57888888888888999888888777766666677777777888
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCc
Q 040301 280 FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329 (524)
Q Consensus 280 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~ 329 (524)
+....|+.+.++.+|.+||+.+|.+. .+|..++++.+|+++.+.+|+|.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 88766677888999999999999988 78888999999999999999886
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-28 Score=227.47 Aligned_cols=310 Identities=26% Similarity=0.398 Sum_probs=172.1
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 101 (524)
++.|++++|.+. ..|..++.+..|+.|+..+|+++..+ +.+.++.+|..|++.+|++....|..+. +.
T Consensus 116 l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp---------~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~- 183 (565)
T KOG0472|consen 116 LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLP---------EDMVNLSKLSKLDLEGNKLKALPENHIA-MK- 183 (565)
T ss_pred hhhhhcccccee-ecCchHHHHhhhhhhhccccccccCc---------hHHHHHHHHHHhhccccchhhCCHHHHH-HH-
Confidence 333444444443 33334444444444444444443322 4455555555566666665544443333 44
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccc-cCCCCCCEEEc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDL-CHLKLMYGIRL 180 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l 180 (524)
.|++|++.+|-+. .+|..++.+.+|..|+|..|++. .+| .|..+..|.+|+++.|+|+ .+|.+. .+++++..|++
T Consensus 184 ~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 6666666666655 45566666666666666666665 344 5555555666655555555 333332 35556666666
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcc-------------------------
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND------------------------- 235 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------- 235 (524)
.+|+++ ..|+.+..+.+|+.||+++|.++ .+|..++++ .|+.|.+.+|.+..
T Consensus 260 RdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 666655 45555555555666666666555 345555555 55555555554320
Q ss_pred ------------c-CCcCcc---CCCC--------------------------CCEEEcCCCcCcccc------------
Q 040301 236 ------------S-LPSNIQ---TLKV--------------------------LRVLDLSRNQLSGDI------------ 261 (524)
Q Consensus 236 ------------~-~~~~~~---~l~~--------------------------L~~L~l~~n~l~~~~------------ 261 (524)
. .+..+. .+.+ ....+++.|++.+.|
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD 416 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH
Confidence 0 000000 0001 122333444333221
Q ss_pred ------------ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCC-----------------------C
Q 040301 262 ------------STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS-----------------------G 306 (524)
Q Consensus 262 ------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-----------------------~ 306 (524)
..++.+++|..|+|++|.+. .+|..++.+..|+.||+++|+|. .
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccc
Confidence 22344567777777777776 56777777777777777777664 2
Q ss_pred CCcccccCCCCCCeEEccCCcCccccCCCCcCCCCCcccccCCCC
Q 040301 307 KIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYA 351 (524)
Q Consensus 307 ~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~~ 351 (524)
..|+.+..+.+|..+|+.+|.+....|..|...++..+++.||+.
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 223346677889999999999887777777888888888888864
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=230.09 Aligned_cols=288 Identities=20% Similarity=0.239 Sum_probs=153.5
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccc-cCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNN-LTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
.+++|+.|++++|++. .+|..+..+++|++|+|+++. ++.+ +.++.+++|++|+|++|.....+|..+
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~i----------p~ls~l~~Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEI----------PDLSMATNLETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcC----------CccccCCcccEEEecCCCCccccchhh
Confidence 3445555555555554 444455555555555555442 2221 224445555555555554444455555
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCC
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 176 (524)
..+. +|+.|++++|.....+|..+ ++++|+.|++++|......|.. .++|++|++++|.++ .+|..+ .+++|+
T Consensus 678 ~~L~-~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~ 750 (1153)
T PLN03210 678 QYLN-KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLD 750 (1153)
T ss_pred hccC-CCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccc
Confidence 5554 55555555554333444433 4555555555555433333321 234555555555554 334332 344555
Q ss_pred EEEccCCccc-------ccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCE
Q 040301 177 GIRLTGNKLS-------GHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRV 249 (524)
Q Consensus 177 ~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 249 (524)
.|.+.++... ...+..+...++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++|+.
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~ 829 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLES 829 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCE
Confidence 5555442211 0111112223566777777766555667777777777777777764444555544 5677777
Q ss_pred EEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCc
Q 040301 250 LDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNR 327 (524)
Q Consensus 250 L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~ 327 (524)
|++++|........ ...+|+.|+|++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.++++++.
T Consensus 830 L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 830 LDLSGCSRLRTFPD--ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EECCCCCccccccc--cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 77776543221111 1246777777777776 466777777777777777744333566666667777777766653
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=224.59 Aligned_cols=308 Identities=19% Similarity=0.207 Sum_probs=219.8
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
+.+|+.|++.++.++ .+|..| ...+|++|++++|++..++ ..+..+++|+.|+|+++.....+|. +..
T Consensus 588 p~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~---------~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 588 PPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW---------DGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred CcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc---------cccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 356777777777776 666666 4577888888888776543 4566778888888887765445553 556
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
++ +|+.|++.+|.....+|..+.++++|+.|++++|.....+|..+ ++++|+.|++++|.....+|.. .++|+.|
T Consensus 656 l~-~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 656 AT-NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred CC-cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 65 88888888887666788888888888888888875544556544 6788888888887655455543 3567888
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCC-------CccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEE
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLT-------SSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLD 251 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 251 (524)
++++|.+. .+|..+ .+++|+.|++.++... ...+..+...++|+.|++++|.....+|..++++++|+.|+
T Consensus 731 ~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 731 DLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred ecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 88888876 455544 4677777777664321 11122233457899999999987778999999999999999
Q ss_pred cCCCc-CccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCC-cCc
Q 040301 252 LSRNQ-LSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHN-RLE 329 (524)
Q Consensus 252 l~~n~-l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n-~l~ 329 (524)
+++|. +...+..+ .+++|+.|++++|.....+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++| .+.
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 99874 55444433 6889999999998655556543 468999999999998 78999999999999999984 555
Q ss_pred cccCCCCcCCCCCcccccCCC
Q 040301 330 GKILVKGSFKNFSAESFFGNY 350 (524)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~n~ 350 (524)
........+..+..+++.+..
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCcccccccCCCeeecCCCc
Confidence 433333445555555555443
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-23 Score=213.70 Aligned_cols=262 Identities=25% Similarity=0.352 Sum_probs=207.3
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
..-..||+++|+++ .+|..+. ++|+.|++++|+++.++. ..++|++|++++|+++.. |..
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~------------lp~~Lk~LdLs~N~LtsL-P~l---- 260 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA------------LPPELRTLEVSGNQLTSL-PVL---- 260 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC------------CCCCCcEEEecCCccCcc-cCc----
Confidence 45778999999999 7888775 489999999999987642 147899999999999954 532
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
..+|+.|++++|.+.. +|.. ..+|+.|++++|+++. +|. ..++|+.|++++|.+++ +|.. ..+|+.|+
T Consensus 261 p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~ 328 (788)
T PRK15387 261 PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLW 328 (788)
T ss_pred ccccceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccc
Confidence 2389999999999873 4442 3578899999999984 443 35789999999999984 4542 24578899
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG 259 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 259 (524)
+++|.+.+ +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.+++
T Consensus 329 Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 329 AYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS 396 (788)
T ss_pred cccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC
Confidence 99999974 5542 2479999999999984 5543 3578889999999984 6653 3579999999999987
Q ss_pred ccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 260 DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 260 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
.+.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+..+++|+.+++++|++++..+
T Consensus 397 LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 397 LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 6643 3579999999999984 6653 347889999999998 789999999999999999999987654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-25 Score=226.36 Aligned_cols=319 Identities=27% Similarity=0.352 Sum_probs=214.8
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCC------------------------------------CC
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTES------------------------------------SL 62 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~------------------------------------~~ 62 (524)
+.+|++|.|..|.+. ..|.++..+.+|++|++++|.+..++ .+
T Consensus 90 ~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l 168 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVL 168 (1081)
T ss_pred hhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhc
Confidence 356777777766666 66777777777777777777666552 11
Q ss_pred ccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc----------------CcccccEEEeccCcccccCCccccCCCC
Q 040301 63 ADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN----------------FSASFQNFYAFNCKLKGNIPQEIGNLRG 126 (524)
Q Consensus 63 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 126 (524)
.+.++ ..+..+++ .|||++|.+....-..+.+ .-.+++.|+.++|.++...+. .--.+
T Consensus 169 ~~~~~--~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~n 242 (1081)
T KOG0618|consen 169 GGSFL--IDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLN 242 (1081)
T ss_pred ccchh--cchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--ccccc
Confidence 11111 22222222 3666666655111001000 001344444455554422211 12356
Q ss_pred CCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 040301 127 LTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGS 206 (524)
Q Consensus 127 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 206 (524)
|+++++++|++++ +|.+++.+.+|+.|.+.+|+++ .+|..+....+|+.|.+.+|.+. .+|.....+.+|++|+|..
T Consensus 243 l~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 243 LQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence 8888888888874 4588888888888888888886 67777788888888888888876 5666677788888888888
Q ss_pred CcCCCccChhc-cC-------------------------CCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 207 NKLTSSIPSSL-WS-------------------------LEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 207 n~l~~~~~~~~-~~-------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
|++.. .|+.+ .- .+.|+.|++.+|.+++..-+.+.++.+|+.|+|++|.+...
T Consensus 320 N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 320 NNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred ccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 88763 33311 11 23466778888888877666778888999999999988877
Q ss_pred c-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcC
Q 040301 261 I-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSF 338 (524)
Q Consensus 261 ~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~ 338 (524)
+ ..+.++..|++|+|++|+++ .+|+.+..++.|++|...+|++. ..| .+..++.|+.+|++.|.++-.... .-.+
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 7 66788888899999999888 57788888888888888888887 566 677888888888888887754332 2233
Q ss_pred CCCCcccccCCCC
Q 040301 339 KNFSAESFFGNYA 351 (524)
Q Consensus 339 ~~~~~~~~~~n~~ 351 (524)
++++.+++.||..
T Consensus 476 p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTR 488 (1081)
T ss_pred cccceeeccCCcc
Confidence 6777888888864
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-25 Score=207.95 Aligned_cols=300 Identities=19% Similarity=0.226 Sum_probs=216.6
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
..+|-++-.++ ++|..+. +...+++|.+|+|+.++. ++|+.+++|+.|||++|+|+.+.|+.|..+. +
T Consensus 49 ~~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~--------~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~ 116 (498)
T KOG4237|consen 49 GIVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPP--------GAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-S 116 (498)
T ss_pred ceEEccCCCcc-cCcccCC--CcceEEEeccCCcccCCh--------hhccchhhhceecccccchhhcChHhhhhhH-h
Confidence 45777777777 6776642 267888888888888876 8888888888888888888888888888887 6
Q ss_pred ccEEEecc-CcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 103 FQNFYAFN-CKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 103 L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+..|.+.+ |+|+....+.|++|..|+.|.+.-|++..+...+|..+++|..|.+-+|.+...--..|..+..++.+.+.
T Consensus 117 l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 117 LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 66665555 88887777778888888888888888888888888888888888888888873333377888888888887
Q ss_pred CCccc------------ccCCccccCCCCCCEEEccCCcCCCccChhccC-CCCCCEEEcCCCcCcccCC-cCccCCCCC
Q 040301 182 GNKLS------------GHIPPCLASLTSLRELHLGSNKLTSSIPSSLWS-LEYILMINLSSNSLNDSLP-SNIQTLKVL 247 (524)
Q Consensus 182 ~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 247 (524)
.|.+. -..|..++...-..-..+.+.++..+-+..|.. +..+..--.+.+...+..| ..|..+++|
T Consensus 197 ~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L 276 (498)
T KOG4237|consen 197 QNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL 276 (498)
T ss_pred cCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence 77621 112333333333333344444444333333221 1111111112222222333 347888999
Q ss_pred CEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCC
Q 040301 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHN 326 (524)
Q Consensus 248 ~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n 326 (524)
+.|++++|+++.+. .+|.+...+++|.|..|++.......|..+..|++|+|.+|+|+...|..|..+.+|..+++-.|
T Consensus 277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 99999999988776 67888888999999999988777788888999999999999999888889999999999999999
Q ss_pred cCccccCC
Q 040301 327 RLEGKILV 334 (524)
Q Consensus 327 ~l~~~~~~ 334 (524)
++.|.+..
T Consensus 357 p~~CnC~l 364 (498)
T KOG4237|consen 357 PFNCNCRL 364 (498)
T ss_pred cccCccch
Confidence 98877654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-22 Score=206.65 Aligned_cols=252 Identities=27% Similarity=0.308 Sum_probs=199.7
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP 93 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 93 (524)
.|...+.+|+.|++++|+++ .+|.. .++|++|++++|+++.++. . .++|+.|++++|.+.. +|
T Consensus 216 LP~~l~~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~LtsLP~---------l---p~sL~~L~Ls~N~L~~-Lp 278 (788)
T PRK15387 216 LPDCLPAHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTSLPV---------L---PPGLLELSIFSNPLTH-LP 278 (788)
T ss_pred CCcchhcCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCcccC---------c---ccccceeeccCCchhh-hh
Confidence 34443468999999999999 57753 5799999999999997642 1 3679999999999984 34
Q ss_pred hhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCC
Q 040301 94 PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLK 173 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 173 (524)
..+ .+|+.|++++|+++. +|. .+++|+.|++++|++.+. |.. ..+|+.|++++|.++ .+|.. ..
T Consensus 279 ~lp----~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~l---p~ 342 (788)
T PRK15387 279 ALP----SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-SLPTL---PS 342 (788)
T ss_pred hch----hhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccCccc-ccccc---cc
Confidence 322 378999999999984 554 357899999999999854 432 246889999999998 45542 24
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcC
Q 040301 174 LMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253 (524)
Q Consensus 174 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 253 (524)
+|+.|++++|++++ +|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.+.+ +|.. .++|+.|+++
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS 410 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVS 410 (788)
T ss_pred ccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEcc
Confidence 79999999999984 5543 3578889999999984 5653 3579999999999985 5543 3689999999
Q ss_pred CCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccC
Q 040301 254 RNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLET 314 (524)
Q Consensus 254 ~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 314 (524)
+|.+++++.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus 411 ~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 411 GNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 9999987643 346889999999998 68999999999999999999999887776643
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-23 Score=194.18 Aligned_cols=284 Identities=24% Similarity=0.255 Sum_probs=227.4
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccC-CCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS-NPLGGIL 92 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~ 92 (524)
+|.--+...++++|..|+|+...|..|+.+++|+.||||.|.|+.+.. .+|.++++|..|-+.+ |+|+...
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p--------~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP--------DAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcCh--------HhhhhhHhhhHHHhhcCCchhhhh
Confidence 344456788999999999998899999999999999999999999864 8999999998887777 9999777
Q ss_pred ChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc----------
Q 040301 93 PPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE---------- 162 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---------- 162 (524)
...|+.+. .++.|.+.-|++.-...+.|..+++|..|.+..|.+..+--..|..+..++.+.+..|.+-
T Consensus 133 k~~F~gL~-slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 133 KGAFGGLS-SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhHhhhHH-HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 78999998 9999999999999888999999999999999999998655568999999999999888833
Q ss_pred --ccCCccccCCCCCCEEEccCCcccccCCccccC-CCCCCEEEccCCcCCCccC-hhccCCCCCCEEEcCCCcCcccCC
Q 040301 163 --GSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLAS-LTSLRELHLGSNKLTSSIP-SSLWSLEYILMINLSSNSLNDSLP 238 (524)
Q Consensus 163 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 238 (524)
...|..++...-..-..+.++++.-..+..|.. +.++..-..+.+...+..| ..|..+++|+.|+|++|.+++.-+
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 122333333333334444555554333332221 1122111122333333444 568899999999999999999999
Q ss_pred cCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCC
Q 040301 239 SNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306 (524)
Q Consensus 239 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 306 (524)
.+|..+..++.|.|..|++.... ..|.++..|++|+|.+|+|+...|..|..+.+|.+|++-.|.+..
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 99999999999999999998766 678899999999999999999999999999999999999999863
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-21 Score=200.74 Aligned_cols=247 Identities=24% Similarity=0.387 Sum_probs=181.2
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+.+.|++++++++ .+|..+. ++|+.|+|++|+++.++. .+. ++|++|++++|.++. +|..+.
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~---------~l~--~nL~~L~Ls~N~Lts-LP~~l~-- 240 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPE---------NLQ--GNIKTLYANSNQLTS-IPATLP-- 240 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCCh---------hhc--cCCCEEECCCCcccc-CChhhh--
Confidence 57889999999998 6777664 489999999999987652 222 479999999999984 565543
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
.+|+.|++++|++. .+|..+. .+|+.|++++|++.. +|..+. ++|+.|++++|.++ .+|..+. ++|+.|+
T Consensus 241 -~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~ 310 (754)
T PRK15370 241 -DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLN 310 (754)
T ss_pred -ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHH
Confidence 27899999999988 5676554 579999999999884 565443 58999999999888 4555443 4688888
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG 259 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 259 (524)
+++|.+.. +|..+ .++|+.|++++|.+++ +|..+ .++|+.|++++|++. .+|..+ .++|+.|++++|.++.
T Consensus 311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 311 VQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred hcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC
Confidence 88888874 45433 2578888888888874 56544 267888888888887 356544 2578888888888877
Q ss_pred ccccccccCCCCEEEccCCcccCCCcccc----cCCCCCCEEeCCCCcCC
Q 040301 260 DISTIGALVDLETLSLASNQFQGPIPESV----GSLISLESLDLSGNNLS 305 (524)
Q Consensus 260 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~l~ 305 (524)
.+..+. ..|+.|++++|++. .+|..+ ..++++..|++.+|.++
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 665443 25778888888887 445443 33467788888888876
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-23 Score=209.88 Aligned_cols=299 Identities=29% Similarity=0.323 Sum_probs=187.2
Q ss_pred CCccE-EEccCCcccccCCcccccccCCCEEEccccccCCCCCCcccc--------Ccc--ccCCCCCCCCEEEccCCCC
Q 040301 20 QIYWV-MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQW--------SFL--SALTNCRHLKALSLGSNPL 88 (524)
Q Consensus 20 ~~l~~-Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------~~~--~~~~~l~~L~~L~l~~n~l 88 (524)
.+++. |||.+|.+. . -...++++|+.|..+.|++..+..-.... |+. .....-.+|+++|+++|++
T Consensus 177 ~~l~~~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l 253 (1081)
T KOG0618|consen 177 YNLTHQLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL 253 (1081)
T ss_pred hhhheeeecccchhh-h--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh
Confidence 34555 999999887 2 23566778888888888887653200000 000 0001113344444444444
Q ss_pred CCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCcc
Q 040301 89 GGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYD 168 (524)
Q Consensus 89 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 168 (524)
.+ +|+.+.... +|+.+...+|++. .+|..+.....|+.|++..|.+..+ |..+..+..|+.|+|..|.+. ..|+.
T Consensus 254 ~~-lp~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~-~lp~~ 328 (1081)
T KOG0618|consen 254 SN-LPEWIGACA-NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLP-SLPDN 328 (1081)
T ss_pred hc-chHHHHhcc-cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhcccc-ccchH
Confidence 42 234444443 4444444444442 3444444444444444444444422 233444445555555555554 22222
Q ss_pred c-cCCCC-CCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCC
Q 040301 169 L-CHLKL-MYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKV 246 (524)
Q Consensus 169 ~-~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 246 (524)
+ ..... |+.|..+.|.+.......=..++.|+.|++.+|.++...-..+...++|+.|+|++|++.......+.++..
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence 2 11111 334444444443111111123467888999999998777778889999999999999998766667889999
Q ss_pred CCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCC
Q 040301 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHN 326 (524)
Q Consensus 247 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n 326 (524)
|++|+||+|+++.++..+..++.|++|...+|++. ..| .+..++.|+.+|++.|.++...-......++|++||+++|
T Consensus 409 LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 409 LEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 99999999999999988889999999999999998 677 7889999999999999998443222233389999999999
Q ss_pred cC
Q 040301 327 RL 328 (524)
Q Consensus 327 ~l 328 (524)
..
T Consensus 487 ~~ 488 (1081)
T KOG0618|consen 487 TR 488 (1081)
T ss_pred cc
Confidence 73
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-20 Score=195.35 Aligned_cols=248 Identities=24% Similarity=0.384 Sum_probs=195.4
Q ss_pred cCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccC
Q 040301 44 RHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGN 123 (524)
Q Consensus 44 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 123 (524)
.+...|++++++++.++. .+. ++|+.|+|++|+++. +|..+. . +|+.|++++|+++ .+|..+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~---------~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~-nL~~L~Ls~N~Lt-sLP~~l~- 240 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA---------CIP--EQITTLILDNNELKS-LPENLQ--G-NIKTLYANSNQLT-SIPATLP- 240 (754)
T ss_pred cCceEEEeCCCCcCcCCc---------ccc--cCCcEEEecCCCCCc-CChhhc--c-CCCEEECCCCccc-cCChhhh-
Confidence 357899999999987652 232 579999999999994 555443 3 8999999999998 4666554
Q ss_pred CCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 040301 124 LRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203 (524)
Q Consensus 124 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 203 (524)
.+|+.|++++|++. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|+
T Consensus 241 -~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~ 310 (754)
T PRK15370 241 -DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLN 310 (754)
T ss_pred -ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHH
Confidence 47999999999998 5565553 58999999999998 5677654 589999999999984 554443 4789999
Q ss_pred ccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCC
Q 040301 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGP 283 (524)
Q Consensus 204 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~ 283 (524)
+++|.+.. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++..+..+ .++|+.|+|++|+++ .
T Consensus 311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~ 381 (754)
T PRK15370 311 VQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-N 381 (754)
T ss_pred hcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-C
Confidence 99999984 55543 3689999999999985 666553 79999999999998776544 368999999999999 4
Q ss_pred CcccccCCCCCCEEeCCCCcCCCCCccccc----CCCCCCeEEccCCcCcc
Q 040301 284 IPESVGSLISLESLDLSGNNLSGKIPKSLE----TLSHLKQFNASHNRLEG 330 (524)
Q Consensus 284 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~l~~L~~l~l~~n~l~~ 330 (524)
+|..+. .+|+.|++++|++. .+|..+. .++.+..+++.+|+++.
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 666554 37999999999998 5565443 45788999999999864
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-21 Score=186.69 Aligned_cols=282 Identities=27% Similarity=0.345 Sum_probs=159.3
Q ss_pred EEEccCCccc-ccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 24 VMDLSSNSFS-GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 24 ~Ldls~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
.|+|++++++ ...+..|..+.+|++|+++++.++.... ..++ ..+...++|++|+++++.+.+. +..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~i~--~~l~~~~~l~~l~l~~~~~~~~-~~~~~----- 71 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAA--KALA--SALRPQPSLKELCLSLNETGRI-PRGLQ----- 71 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHH--HHHH--HHHhhCCCceEEeccccccCCc-chHHH-----
Confidence 5788888888 4456666778889999999998865311 0112 4566777889999988887631 11110
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCC---CCeEecccCcccc----cCCccccCC-CC
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQ---LRGLSLKYNNLEG----SIPYDLCHL-KL 174 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~~~~~~~l-~~ 174 (524)
.++..+.++++|+.|++++|.+....+..+..+.+ |++|++++|++++ .+...+..+ ++
T Consensus 72 -------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~ 138 (319)
T cd00116 72 -------------SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138 (319)
T ss_pred -------------HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC
Confidence 12223333444444555444444333333322222 5555555554441 122233334 55
Q ss_pred CCEEEccCCcccc----cCCccccCCCCCCEEEccCCcCCCc----cChhccCCCCCCEEEcCCCcCccc----CCcCcc
Q 040301 175 MYGIRLTGNKLSG----HIPPCLASLTSLRELHLGSNKLTSS----IPSSLWSLEYILMINLSSNSLNDS----LPSNIQ 242 (524)
Q Consensus 175 L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~ 242 (524)
|+.|++++|.+++ ..+..+..+++|+.|++++|.+.+. ++..+...++|+.|++++|.+.+. +...+.
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence 5555555555542 1223344555666666666666532 223344455677777777666432 233445
Q ss_pred CCCCCCEEEcCCCcCcccc-cccc-----ccCCCCEEEccCCcccC----CCcccccCCCCCCEEeCCCCcCCCC----C
Q 040301 243 TLKVLRVLDLSRNQLSGDI-STIG-----ALVDLETLSLASNQFQG----PIPESVGSLISLESLDLSGNNLSGK----I 308 (524)
Q Consensus 243 ~l~~L~~L~l~~n~l~~~~-~~~~-----~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~----~ 308 (524)
.+++|+.|++++|.+++.. ..+. ..+.|+.|++++|.++. .+...+..+++|+.+++++|.++.. .
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 6677777777777776422 1111 23678888888887762 2334455667888888888888744 3
Q ss_pred cccccCC-CCCCeEEccCCcC
Q 040301 309 PKSLETL-SHLKQFNASHNRL 328 (524)
Q Consensus 309 ~~~~~~l-~~L~~l~l~~n~l 328 (524)
...+... +.++.+++.+|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 299 AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhhcCCchhhcccCCCCC
Confidence 3344444 6788888887764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-21 Score=187.17 Aligned_cols=189 Identities=24% Similarity=0.268 Sum_probs=117.5
Q ss_pred CCCccEEEccCCccccc----CCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 19 HQIYWVMDLSSNSFSGH----IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
..+|+.|++++|.+++. ++..+...++|++|+++++.+...+..-..++ ..+.++++|++|++++|.+....+.
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL--QGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH--HHHHhcCceeEEEccCCCCChhHHH
Confidence 35799999999999643 56667778889999999998863211001111 4567788999999999999876666
Q ss_pred hHhcCccc---ccEEEeccCcccc----cCCccccCC-CCCCeEEcccCcCccc----CCccccCCCCCCeEecccCccc
Q 040301 95 VIGNFSAS---FQNFYAFNCKLKG----NIPQEIGNL-RGLTLLSLFNNDLNGT----ISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 95 ~~~~~~~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
.+..+. + |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. .+..+..+++|++|++++|.++
T Consensus 100 ~~~~l~-~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 100 VLESLL-RSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHh-ccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 666655 4 8888888877762 233344555 6777777777777632 2334455566777777766665
Q ss_pred cc----CCccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCcCC
Q 040301 163 GS----IPYDLCHLKLMYGIRLTGNKLSGH----IPPCLASLTSLRELHLGSNKLT 210 (524)
Q Consensus 163 ~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 210 (524)
+. ++..+...++|+.|++++|.+.+. +...+..+++|++|++++|.+.
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 31 222333445555566655554322 1222333444555555555444
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-18 Score=167.38 Aligned_cols=104 Identities=36% Similarity=0.533 Sum_probs=94.3
Q ss_pred cccccchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEE
Q 040301 420 TWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC 499 (524)
Q Consensus 420 ~~~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~ 499 (524)
..+.|++.++..||++|...+.||+|+||.||+|.+++|+.||||++.....+..++|.+|++++.+++|||+|+++|||
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC 140 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC 140 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence 46789999999999999999999999999999999998899999988765432156699999999999999999999999
Q ss_pred EcCCc-ceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDF-KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~-~~lv~e~~~~gsL~~~l~~ 523 (524)
.+.+. .+||||||++|+|.++|+.
T Consensus 141 ~e~~~~~~LVYEym~nGsL~d~L~~ 165 (361)
T KOG1187|consen 141 LEGGEHRLLVYEYMPNGSLEDHLHG 165 (361)
T ss_pred ecCCceEEEEEEccCCCCHHHHhCC
Confidence 99984 9999999999999999853
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-20 Score=152.41 Aligned_cols=164 Identities=29% Similarity=0.524 Sum_probs=103.9
Q ss_pred ccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040301 121 IGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200 (524)
Q Consensus 121 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 200 (524)
+.++.+.+.|.|++|+++ ..|+.++.+.+|+.|++++|+|+ ..|..++.++.|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345666777778888877 45556777778888888888877 66777777777777777777776 6777777777777
Q ss_pred EEEccCCcCCC-ccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCc
Q 040301 201 ELHLGSNKLTS-SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQ 279 (524)
Q Consensus 201 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~ 279 (524)
+||+++|.+.. .+|..|..+..|+.|+|+.|.+. .+|..++++. +|+.|.+.+|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt-----------------------~lqil~lrdnd 161 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT-----------------------NLQILSLRDND 161 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc-----------------------ceeEEeeccCc
Confidence 77777776652 34555555555555555555554 3444444444 44455555555
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCCCCccccc
Q 040301 280 FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLE 313 (524)
Q Consensus 280 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 313 (524)
+. ..|..++.+..|+.|++.+|+++ .+|..++
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 44 45555556666666666666665 3444333
|
|
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-17 Score=154.05 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=83.3
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
...+|...+.||+|.||+||+|++ .++..||||.+... ..+..+....|+++|++++|||||++++++..++.+|+|
T Consensus 8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lV 87 (429)
T KOG0595|consen 8 VVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLV 87 (429)
T ss_pred ccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEE
Confidence 456788889999999999999997 46788999999765 355667788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||.||+|.+||++
T Consensus 88 MEyC~gGDLs~yi~~ 102 (429)
T KOG0595|consen 88 MEYCNGGDLSDYIRR 102 (429)
T ss_pred EEeCCCCCHHHHHHH
Confidence 999999999999986
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-19 Score=149.47 Aligned_cols=163 Identities=29% Similarity=0.460 Sum_probs=116.0
Q ss_pred cccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccc
Q 040301 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI 121 (524)
Q Consensus 42 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 121 (524)
++.+++.|.||+|+++..+ ..++.+.+|+.|++.+|++. .+|..+..++ +|+.|++.-|++. ..|..|
T Consensus 31 ~~s~ITrLtLSHNKl~~vp---------pnia~l~nlevln~~nnqie-~lp~~issl~-klr~lnvgmnrl~-~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVP---------PNIAELKNLEVLNLSNNQIE-ELPTSISSLP-KLRILNVGMNRLN-ILPRGF 98 (264)
T ss_pred chhhhhhhhcccCceeecC---------CcHHHhhhhhhhhcccchhh-hcChhhhhch-hhhheecchhhhh-cCcccc
Confidence 4445555566666665443 45555566666666666665 4555555555 6666666666665 677788
Q ss_pred cCCCCCCeEEcccCcCcc-cCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040301 122 GNLRGLTLLSLFNNDLNG-TISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 200 (524)
+.++.|+.|||++|++.. .+|+.|..++.|+.|+|++|.++ .+|..+.++++|+.|.+.+|.+- .+|..++.++.|+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 888888888888888763 46777888888888888888887 77888888888888888888876 6777888888888
Q ss_pred EEEccCCcCCCccChhccC
Q 040301 201 ELHLGSNKLTSSIPSSLWS 219 (524)
Q Consensus 201 ~L~l~~n~l~~~~~~~~~~ 219 (524)
.|++++|+++ .+|..++.
T Consensus 177 elhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHhcccceee-ecChhhhh
Confidence 8888888887 55554443
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-16 Score=158.38 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=83.7
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEEE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSC 499 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~~ 499 (524)
.-.+....+....+.+|+|.||+||+|+. .+.+.||||.++.... +..++|.||++.+++++|||||+++|.|
T Consensus 479 ~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC 558 (774)
T KOG1026|consen 479 KVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVC 558 (774)
T ss_pred ceeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEE
Confidence 33344556677788999999999999994 2345699999987664 4788999999999999999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.++++.+||+|||..|||++||+-
T Consensus 559 ~~~~P~~MvFEYm~~GDL~eFLra 582 (774)
T KOG1026|consen 559 REGDPLCMVFEYMDHGDLHEFLRA 582 (774)
T ss_pred ccCCeeEEEEEecccccHHHHHHh
Confidence 999999999999999999999973
|
|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-15 Score=150.75 Aligned_cols=102 Identities=25% Similarity=0.346 Sum_probs=86.8
Q ss_pred cccchhhhhhhhcc---------ccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC
Q 040301 422 RRTSYLDIQRATDE---------FNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV 487 (524)
Q Consensus 422 ~~~~~~~l~~~~~~---------~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l 487 (524)
..++|+|--.|... ..+.++||.|.||.||+|+++ ....||||.++... ++++.+|+.|..||.++
T Consensus 608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQF 687 (996)
T KOG0196|consen 608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQF 687 (996)
T ss_pred CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccC
Confidence 45666665544433 456789999999999999962 23569999998765 56788999999999999
Q ss_pred CCCCccceeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 488 CHRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 488 ~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++.|+.....+..||+|||++|+|..|||+
T Consensus 688 dHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~ 723 (996)
T KOG0196|consen 688 DHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQ 723 (996)
T ss_pred CCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhh
Confidence 999999999999999999999999999999999986
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-15 Score=143.85 Aligned_cols=97 Identities=21% Similarity=0.291 Sum_probs=84.3
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...++...+.+...+.||+|.||.||.|.+.....||+|.++... -..++|.+|+.+|++++|++||+++|+|..++++
T Consensus 198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~-m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~pi 276 (468)
T KOG0197|consen 198 RDPWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGS-MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPI 276 (468)
T ss_pred cCCeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEeccc-cChhHHHHHHHHHHhCcccCeEEEEEEEecCCce
Confidence 344444555667778999999999999999777789999998753 2457899999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|||||||+.|+|.+||++
T Consensus 277 yIVtE~m~~GsLl~yLr~ 294 (468)
T KOG0197|consen 277 YIVTEYMPKGSLLDYLRT 294 (468)
T ss_pred EEEEEecccCcHHHHhhh
Confidence 999999999999999985
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-14 Score=133.75 Aligned_cols=88 Identities=25% Similarity=0.291 Sum_probs=76.4
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-H------HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-R------AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-~------~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
+.|...+.+|+|+||.|-+|.- .+|+.||||++.+... . ......+|+++|++++|||||+++++|..+++.
T Consensus 172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~ 251 (475)
T KOG0615|consen 172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSS 251 (475)
T ss_pred ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCce
Confidence 4577889999999999999995 6899999999975431 1 122356999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHH
Q 040301 506 ALMWGRLLNISITIIR 521 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l 521 (524)
|||||||+||+|.+++
T Consensus 252 YmVlE~v~GGeLfd~v 267 (475)
T KOG0615|consen 252 YMVLEYVEGGELFDKV 267 (475)
T ss_pred EEEEEEecCccHHHHH
Confidence 9999999999999987
|
|
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-14 Score=140.19 Aligned_cols=101 Identities=19% Similarity=0.254 Sum_probs=86.2
Q ss_pred ccchhhhhhhhccccccCcccCCCCceEEEEEeC--CC--CE-EEEEEeecc---chHHHHHHHHHHHHHhcCCCCCccc
Q 040301 423 RTSYLDIQRATDEFNECNLLGTGSFGSVYKGTIS--DW--TN-VAIKIFNLQ---LERAFRSFDSECEVLRNVCHRNLIK 494 (524)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~--~~-vavK~~~~~---~~~~~~~~~~Ei~~l~~l~H~niv~ 494 (524)
.+..+.|+..-++....+++|+|.||.||+|.+. ++ .. ||||..... ......+|.+|.++|+.++|||||+
T Consensus 146 PI~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr 225 (474)
T KOG0194|consen 146 PIPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVR 225 (474)
T ss_pred cccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 4455666666677777899999999999999963 23 23 899998752 2566789999999999999999999
Q ss_pred eeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 495 ILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 495 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+||++..++++++|||+|.||+|.++|++
T Consensus 226 ~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k 254 (474)
T KOG0194|consen 226 FYGVAVLEEPLMLVMELCNGGSLDDYLKK 254 (474)
T ss_pred EEEEEcCCCccEEEEEecCCCcHHHHHHh
Confidence 99999999999999999999999999986
|
|
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.1e-14 Score=131.86 Aligned_cols=88 Identities=23% Similarity=0.294 Sum_probs=75.1
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC--CCCCccceeEEEEcCC----cc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV--CHRNLIKILSSCSNPD----FK 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l--~H~niv~l~~~~~~~~----~~ 505 (524)
..++....+.||+|.||.||+|.| .|..||||++.... .+.+.+|-++.+.+ +|+||+.+++.-..+. ++
T Consensus 209 iarqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~srd---E~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQL 284 (513)
T KOG2052|consen 209 IARQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSRD---ERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQL 284 (513)
T ss_pred hhheeEEEEEecCccccceeeccc-cCCceEEEEecccc---hhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEE
Confidence 446678889999999999999998 57899999997544 35678899998864 9999999999877653 68
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|||++|.|.|||+|||.+
T Consensus 285 wLvTdYHe~GSL~DyL~r 302 (513)
T KOG2052|consen 285 WLVTDYHEHGSLYDYLNR 302 (513)
T ss_pred EEeeecccCCcHHHHHhh
Confidence 999999999999999964
|
|
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-14 Score=139.45 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=81.0
Q ss_pred cccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 435 EFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
...+.++||+|.||+|..|....+..||||++++.. +...++|.+||++|.+++|||||+++|+|..++++++|+|||+
T Consensus 539 ~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmE 618 (807)
T KOG1094|consen 539 RLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYME 618 (807)
T ss_pred heehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHh
Confidence 355688999999999999998778999999998765 4456899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+|+|.+|+.+
T Consensus 619 nGDLnqFl~a 628 (807)
T KOG1094|consen 619 NGDLNQFLSA 628 (807)
T ss_pred cCcHHHHHHh
Confidence 9999999853
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.6e-14 Score=137.68 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=82.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
..|...+.+|+|+|+.||.++. .+|..||+|++++.. ....+...+||++.+.++|||||+++++|++.+.+|||.
T Consensus 18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL 97 (592)
T KOG0575|consen 18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL 97 (592)
T ss_pred ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence 4699999999999999999996 889999999997643 456778999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|+|++|+|.+++++
T Consensus 98 ELC~~~sL~el~Kr 111 (592)
T KOG0575|consen 98 ELCHRGSLMELLKR 111 (592)
T ss_pred EecCCccHHHHHHh
Confidence 99999999999985
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.2e-14 Score=135.80 Aligned_cols=88 Identities=25% Similarity=0.455 Sum_probs=75.2
Q ss_pred ccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-cceEEEccc
Q 040301 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-FKALMWGRL 512 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-~~~lv~e~~ 512 (524)
......+|+|+||+||+|.+.....||||++.... ....++|.+|+.+|++++|||||+++|+|.++. ..+||||||
T Consensus 43 l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~ 122 (362)
T KOG0192|consen 43 LPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYM 122 (362)
T ss_pred hhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeC
Confidence 34445699999999999999654449999997543 223679999999999999999999999999888 799999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 123 ~~GsL~~~l~~ 133 (362)
T KOG0192|consen 123 PGGSLSVLLHK 133 (362)
T ss_pred CCCcHHHHHhh
Confidence 99999999964
|
|
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=130.74 Aligned_cols=85 Identities=24% Similarity=0.313 Sum_probs=72.0
Q ss_pred cccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHh--cCCCCCccceeEEEEcCC----cceEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLR--NVCHRNLIKILSSCSNPD----FKALM 508 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~--~l~H~niv~l~~~~~~~~----~~~lv 508 (524)
..+....+|+|+||.||+|++.+ +.||||+++.. ..+.|..|-++.+ .++|+||++++++-.... +.+||
T Consensus 211 pl~l~eli~~Grfg~V~KaqL~~-~~VAVKifp~~---~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLV 286 (534)
T KOG3653|consen 211 PLQLLELIGRGRFGCVWKAQLDN-RLVAVKIFPEQ---EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLV 286 (534)
T ss_pred chhhHHHhhcCccceeehhhccC-ceeEEEecCHH---HHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEE
Confidence 45566789999999999999854 89999999764 4467888888866 568999999999876655 89999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
+||.++|||.+||+.
T Consensus 287 t~fh~kGsL~dyL~~ 301 (534)
T KOG3653|consen 287 TEFHPKGSLCDYLKA 301 (534)
T ss_pred eeeccCCcHHHHHHh
Confidence 999999999999974
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-13 Score=126.24 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=78.6
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-cceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-FKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-~~~lv~e~ 511 (524)
+.+..+.||+|..|+||++.+ ++++.+|+|.+.... ....++..+|++++.+++||+||++||+|..+. .++|+|||
T Consensus 80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEY 159 (364)
T KOG0581|consen 80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEY 159 (364)
T ss_pred HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhh
Confidence 445568999999999999997 578899999995433 456788999999999999999999999999988 59999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
|++|||++++++
T Consensus 160 MDgGSLd~~~k~ 171 (364)
T KOG0581|consen 160 MDGGSLDDILKR 171 (364)
T ss_pred cCCCCHHHHHhh
Confidence 999999999875
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-14 Score=129.32 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=78.7
Q ss_pred ccccccCcccCCCCceEEEEE-eCCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCCCCCccceeE-EEEcCCc-ceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILS-SCSNPDF-KALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~H~niv~l~~-~~~~~~~-~~lv 508 (524)
.+|++.++||+|+||.||+++ ..+|..+|.|.++-. ..+..+++..|+.+|+.++|||||++++ .+.++.+ ++||
T Consensus 19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv 98 (375)
T KOG0591|consen 19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV 98 (375)
T ss_pred HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence 468888999999999999999 478999999999732 2455778999999999999999999999 5655555 8999
Q ss_pred EcccCCCCHHHHHHhC
Q 040301 509 WGRLLNISITIIRRHL 524 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~~ 524 (524)
||||.+|+|.+.|+++
T Consensus 99 mE~c~~GDLsqmIk~~ 114 (375)
T KOG0591|consen 99 MELCDAGDLSQMIKHF 114 (375)
T ss_pred HHhhcccCHHHHHHHH
Confidence 9999999999999863
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-13 Score=139.30 Aligned_cols=117 Identities=37% Similarity=0.619 Sum_probs=97.7
Q ss_pred CCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 246 VLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 246 ~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
.++.|+|++|.+.+.. ..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3678899999988655 678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccccCCC--CcCCCCCcccccCCCCCCCCCCCCCCCCC
Q 040301 325 HNRLEGKILVK--GSFKNFSAESFFGNYALCGLPKFRVPPCK 364 (524)
Q Consensus 325 ~n~l~~~~~~~--~~~~~~~~~~~~~n~~lc~~p~~~~~~c~ 364 (524)
+|.++|.+|.. ..+.....+++.+|..+|+.|. .+.|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~--l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG--LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC--CCCCc
Confidence 99999888753 2223445678889999999764 35674
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-15 Score=143.71 Aligned_cols=174 Identities=29% Similarity=0.443 Sum_probs=116.2
Q ss_pred CCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 040301 124 LRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203 (524)
Q Consensus 124 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 203 (524)
+..-...|++.|++. ++|..+..+..|+.+.|..|.+. .+|..++.+..|..|+++.|++. .+|..+..++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 444455677777776 56666666677777777777776 66777777777777777777766 5555555443 66777
Q ss_pred ccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCC
Q 040301 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGP 283 (524)
Q Consensus 204 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~ 283 (524)
+++|+++ .+|..+...+.|..||.+.|.+. .+|..++.+.+|+.|.+..|++...+..++.+ .|..||++.|++. .
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-e
Confidence 7777766 55666666666777777777665 35666666677777777777776666665544 3666777777766 5
Q ss_pred CcccccCCCCCCEEeCCCCcCC
Q 040301 284 IPESVGSLISLESLDLSGNNLS 305 (524)
Q Consensus 284 ~~~~~~~l~~L~~L~l~~N~l~ 305 (524)
+|-.|..|..|++|-|.+|.+.
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC
Confidence 6666777777777777777766
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-13 Score=134.53 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=86.1
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCC-CCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISD-WTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
++.|+-...++.+.+++|-|.||.||.|.|+. ...||||.++.... ...+|..|..+|+.++|||+|+++|+|..+..
T Consensus 259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtM-eveEFLkEAAvMKeikHpNLVqLLGVCT~EpP 337 (1157)
T KOG4278|consen 259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP 337 (1157)
T ss_pred cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcch-hHHHHHHHHHHHHhhcCccHHHHhhhhccCCC
Confidence 35666666778888999999999999999854 56799999986543 46789999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
+|||+|||.+|+|.||||+
T Consensus 338 FYIiTEfM~yGNLLdYLRe 356 (1157)
T KOG4278|consen 338 FYIITEFMCYGNLLDYLRE 356 (1157)
T ss_pred eEEEEecccCccHHHHHHH
Confidence 9999999999999999986
|
|
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.2e-13 Score=128.47 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=83.6
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
...++|+...+||+|+||.||.|+- .+|..+|+|++++.. ..+.+.+..|-.+|...++|.||+++..|++.+++|
T Consensus 138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LY 217 (550)
T KOG0605|consen 138 LSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLY 217 (550)
T ss_pred CCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeE
Confidence 3567899999999999999999995 579999999998654 345677889999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
|||||++||++..+|.+
T Consensus 218 LiMEylPGGD~mTLL~~ 234 (550)
T KOG0605|consen 218 LIMEYLPGGDMMTLLMR 234 (550)
T ss_pred EEEEecCCccHHHHHHh
Confidence 99999999999998864
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-13 Score=134.70 Aligned_cols=196 Identities=31% Similarity=0.481 Sum_probs=145.8
Q ss_pred EEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC-cccccEEEeccCcccccCCccccCCCC
Q 040301 48 SLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF-SASFQNFYAFNCKLKGNIPQEIGNLRG 126 (524)
Q Consensus 48 ~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~ 126 (524)
.|++..|.+.... ..+..++.++.|++.+|++.. ++.....+ . +|+.|++++|++. .+|..+..+++
T Consensus 97 ~l~~~~~~~~~~~---------~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~-nL~~L~l~~N~i~-~l~~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRLRSNI---------SELLELTNLTSLDLDNNNITD-IPPLIGLLKS-NLKELDLSDNKIE-SLPSPLRNLPN 164 (394)
T ss_pred eeeccccccccCc---------hhhhcccceeEEecCCccccc-Cccccccchh-hcccccccccchh-hhhhhhhcccc
Confidence 5777777763321 344555778888888888884 44444444 2 6888888888887 45566788888
Q ss_pred CCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 040301 127 LTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGS 206 (524)
Q Consensus 127 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 206 (524)
|+.|++++|++. ..|...+..+.|+.|++++|.++ .+|........|+.|.+++|.+. ..+..+.++.++..+.+.+
T Consensus 165 L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred ccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCC
Confidence 999999999888 44444447888889999999888 66666556666888899888543 4556677888888888888
Q ss_pred CcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc
Q 040301 207 NKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261 (524)
Q Consensus 207 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 261 (524)
|++. ..+..+..++.++.|++++|.++. ++. ++.+.+++.|++++|.+...+
T Consensus 242 n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 242 NKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccc
Confidence 8876 346778888889999999999875 333 888889999999998887665
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.8e-13 Score=133.47 Aligned_cols=201 Identities=32% Similarity=0.517 Sum_probs=164.6
Q ss_pred CEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCC-CCCeEEcccCcCcccCCccccCCCCCCeEecc
Q 040301 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLR-GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLK 157 (524)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 157 (524)
..|++..|.+.... ..+..+. .+..|++.+|.++ .++.....+. +|+.|++++|++. ..|..+..+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~-~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELT-NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCc-hhhhccc-ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccC
Confidence 36899999985333 3344444 7999999999998 5666667774 9999999999998 455678899999999999
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccC
Q 040301 158 YNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSL 237 (524)
Q Consensus 158 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 237 (524)
+|+++ .+|......+.|+.|++++|++. .+|........|+.|.+++|.+. ..+..+..+.++..+.+.+|++.. +
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence 99999 66666668899999999999998 56665555667999999999654 567778889999999999999873 4
Q ss_pred CcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccc
Q 040301 238 PSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESV 288 (524)
Q Consensus 238 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 288 (524)
+..++.++++++|++++|.++.... +..+.+++.|++++|.+....+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhh
Confidence 7788899999999999999987766 8888999999999999986655543
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.3e-13 Score=123.48 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=82.7
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..++||+|+||+|+.++. ++++.+|+|.+++.. ....+...+|..+|.+++||.||+++..|++++.+|+
T Consensus 23 ~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLyl 102 (357)
T KOG0598|consen 23 GPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYL 102 (357)
T ss_pred ChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEE
Confidence 457899999999999999999996 568999999997654 3456778899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|+||+.||+|+.+|++
T Consensus 103 Vld~~~GGeLf~hL~~ 118 (357)
T KOG0598|consen 103 VLDYLNGGELFYHLQR 118 (357)
T ss_pred EEeccCCccHHHHHHh
Confidence 9999999999999863
|
|
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-13 Score=125.90 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=79.9
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.|++.+.+|+|.||+|-+|.. ..|+.||||.+++.. +++.-...+||++|+.++||||+++|++|...+.+.||||
T Consensus 54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivME 133 (668)
T KOG0611|consen 54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVME 133 (668)
T ss_pred HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEE
Confidence 478888999999999999995 679999999997654 4455567899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|..+|.|.||+.+
T Consensus 134 YaS~GeLYDYiSe 146 (668)
T KOG0611|consen 134 YASGGELYDYISE 146 (668)
T ss_pred ecCCccHHHHHHH
Confidence 9999999999854
|
|
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.9e-13 Score=127.19 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=74.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--CcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~l 507 (524)
.+.|+..++||+|.||.||+|+. .+|+.||+|++.-.. .+...-..|||.+|++++||||+++.+...+. ..+||
T Consensus 116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl 195 (560)
T KOG0600|consen 116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL 195 (560)
T ss_pred hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence 35688889999999999999995 789999999997544 33344567999999999999999999999876 68999
Q ss_pred EEcccCCCCHHHHH
Q 040301 508 MWGRLLNISITIIR 521 (524)
Q Consensus 508 v~e~~~~gsL~~~l 521 (524)
|+|||+. +|.-++
T Consensus 196 VFeYMdh-DL~GLl 208 (560)
T KOG0600|consen 196 VFEYMDH-DLSGLL 208 (560)
T ss_pred EEecccc-hhhhhh
Confidence 9999996 877655
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-12 Score=138.38 Aligned_cols=91 Identities=22% Similarity=0.368 Sum_probs=79.9
Q ss_pred hccccccCcccCCCCceEEEEEeC--CCC----EEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS--DWT----NVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~----~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
....+....||+|.||.||.|++. ++. .||||.+++.. .+...+|.+|..+|++++|||||+++|.|.+....
T Consensus 691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~ 770 (1025)
T KOG1095|consen 691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPP 770 (1025)
T ss_pred hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCc
Confidence 445667789999999999999962 333 49999997654 56788999999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
+|++|||++|+|..|||+
T Consensus 771 ~i~leyM~gGDL~sflr~ 788 (1025)
T KOG1095|consen 771 LILLEYMEGGDLLSFLRE 788 (1025)
T ss_pred EEEehhcccCcHHHHHHh
Confidence 999999999999999986
|
|
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.3e-13 Score=116.87 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=80.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
-++|++.+.+|+|.||.||.|+. .++-.||+|++.+.. .+..+++.+|+++=+.++||||+++|+||.+....|++
T Consensus 21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi 100 (281)
T KOG0580|consen 21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI 100 (281)
T ss_pred hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence 45789999999999999999997 456779999996543 34467899999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
+||.++|++...|+
T Consensus 101 lEya~~gel~k~L~ 114 (281)
T KOG0580|consen 101 LEYAPRGELYKDLQ 114 (281)
T ss_pred EEecCCchHHHHHH
Confidence 99999999999887
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-14 Score=138.64 Aligned_cols=180 Identities=32% Similarity=0.486 Sum_probs=155.4
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
...+..|+++|++. ++|..+..+..|+.|.|..|.+..++ ..+.++..|++|||+.|++. .+|..+..+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip---------~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l 143 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIP---------EAICNLEALTFLDLSSNQLS-HLPDGLCDL 143 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecc---------hhhhhhhHHHHhhhccchhh-cCChhhhcC
Confidence 46678999999998 89999999999999999999998765 78889999999999999998 778888887
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
-|+.|-+++|+++ .+|..++.++.|..||.+.|++. .+|..++.+.+|+.|.+..|++. .+|..+..++ |..||
T Consensus 144 --pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lD 217 (722)
T KOG0532|consen 144 --PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLD 217 (722)
T ss_pred --cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeee
Confidence 5899999999998 68888888899999999999998 67788999999999999999998 6777777554 78899
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhcc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLW 218 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 218 (524)
++.|++. .+|-.|.+|..|++|-|.+|.+. ..|..+.
T Consensus 218 fScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 218 FSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred cccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 9999998 78888999999999999999987 4444443
|
|
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-12 Score=116.17 Aligned_cols=89 Identities=22% Similarity=0.385 Sum_probs=77.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..|...+.+|+|.||.||+|+. .+|+.||||+++... ++......|||+.|++++|+||+.++++|-..+.+.||+|
T Consensus 2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE 81 (318)
T KOG0659|consen 2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE 81 (318)
T ss_pred chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence 4577888999999999999995 679999999997544 2334567899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
||+. +|+..||+
T Consensus 82 fm~t-dLe~vIkd 93 (318)
T KOG0659|consen 82 FMPT-DLEVVIKD 93 (318)
T ss_pred eccc-cHHHHhcc
Confidence 9996 99988875
|
|
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-12 Score=127.34 Aligned_cols=96 Identities=19% Similarity=0.295 Sum_probs=80.9
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCC-CCCccceeEEE
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVC-HRNLIKILSSC 499 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~ 499 (524)
.+....++|.+.+.||+|+||.||+|+.. .+..||||++.... ....+.|.+|+++++++. |||||+++++|
T Consensus 31 ~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~ 110 (400)
T cd05105 31 RWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGAC 110 (400)
T ss_pred ceeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEE
Confidence 34445678899999999999999999852 13469999997543 344568999999999996 99999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+.+..|+|||||++|+|.++|++
T Consensus 111 ~~~~~~~lv~Ey~~~g~L~~~l~~ 134 (400)
T cd05105 111 TKSGPIYIITEYCFYGDLVNYLHK 134 (400)
T ss_pred ccCCceEEEEEecCCCcHHHHHHH
Confidence 999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-12 Score=127.19 Aligned_cols=89 Identities=25% Similarity=0.442 Sum_probs=78.5
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|-..+.||+|+||.||||+. .+.+.||+|.+.+.. ++..+...+|++++++++|||||.+++.|.+..++|+|+|
T Consensus 2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte 81 (808)
T KOG0597|consen 2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE 81 (808)
T ss_pred cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence 4677778999999999999995 467889999997544 4567789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
||.| +|+.+|.+
T Consensus 82 ~a~g-~L~~il~~ 93 (808)
T KOG0597|consen 82 YAVG-DLFTILEQ 93 (808)
T ss_pred hhhh-hHHHHHHh
Confidence 9986 99998853
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-12 Score=118.01 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=74.1
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
+.|+....+|+|+||+||+|+. .+|+.||||++-... ....+-..|||++|+.++|||+|.++++|.....+++|+|
T Consensus 2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE 81 (396)
T KOG0593|consen 2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE 81 (396)
T ss_pred cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence 4688888999999999999996 579999999995433 3345667899999999999999999999999999999999
Q ss_pred ccCCCCHHHHH
Q 040301 511 RLLNISITIIR 521 (524)
Q Consensus 511 ~~~~gsL~~~l 521 (524)
||+. ++.+-|
T Consensus 82 ~~dh-TvL~eL 91 (396)
T KOG0593|consen 82 YCDH-TVLHEL 91 (396)
T ss_pred ecch-HHHHHH
Confidence 9986 444444
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-12 Score=125.58 Aligned_cols=97 Identities=26% Similarity=0.453 Sum_probs=85.2
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
.+.++|.+..+.+.....||+|+||+||+|.+.. .||||.++... ....+.|++||.++++.+|.||+-+.|||..
T Consensus 382 ~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~ 459 (678)
T KOG0193|consen 382 DSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMN 459 (678)
T ss_pred ccccccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcC
Confidence 3457777788888889999999999999999854 68999997654 4578899999999999999999999999998
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++. .||+.+|+|-+|+.+|+-
T Consensus 460 p~~-AIiTqwCeGsSLY~hlHv 480 (678)
T KOG0193|consen 460 PPL-AIITQWCEGSSLYTHLHV 480 (678)
T ss_pred Cce-eeeehhccCchhhhhccc
Confidence 877 999999999999999863
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-13 Score=126.03 Aligned_cols=255 Identities=23% Similarity=0.298 Sum_probs=133.4
Q ss_pred CCCCccEEEccCCccccc----CCcccccccCCCEEEccccccCCCCCCccccC-----ccccCCCCCCCCEEEccCCCC
Q 040301 18 PHQIYWVMDLSSNSFSGH----IPNTFGNLRHLSSLLLTWNNLTTESSLADQWS-----FLSALTNCRHLKALSLGSNPL 88 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l 88 (524)
+..+++.|+||+|.|... +...+.+.++|+..++|.-..... ...+| +-..+.+.++|++||||+|-+
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~---~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRL---KDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCc---HHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 457899999999999743 344556677888888876322211 11111 113455667899999999988
Q ss_pred CCCCChhHhcCc---ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccccc-
Q 040301 89 GGILPPVIGNFS---ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGS- 164 (524)
Q Consensus 89 ~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~- 164 (524)
....+..|..+. ..|++|.|.+|.+.-.-...++. -|..|. .+. -..+-++|+.+...+|++...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k-------k~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK-------KAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh-------ccCCCcceEEEEeecccccccc
Confidence 765554444431 14555555555443111111110 111111 111 122345677777777777632
Q ss_pred ---CCccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCcCCCc----cChhccCCCCCCEEEcCCCcC
Q 040301 165 ---IPYDLCHLKLMYGIRLTGNKLSGH----IPPCLASLTSLRELHLGSNKLTSS----IPSSLWSLEYILMINLSSNSL 233 (524)
Q Consensus 165 ---~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 233 (524)
+...|...+.|+.+.++.|.|... +...+..+++|++|||++|.++.. +...+..++.|+.|++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 233455566777777777765421 123455566666666666666532 122333444444444444444
Q ss_pred cccCCcCccCCCCCCEEEcCCCcCccccccc-cccCCCCEEEccCCcccCC----CcccccCCCCCCEEeCCCCcCC
Q 040301 234 NDSLPSNIQTLKVLRVLDLSRNQLSGDISTI-GALVDLETLSLASNQFQGP----IPESVGSLISLESLDLSGNNLS 305 (524)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 305 (524)
...-...| ...+ ...|.|+.|.+.+|.++.. +...+...|.|+.|+|++|.+.
T Consensus 254 ~~~Ga~a~-------------------~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 254 ENEGAIAF-------------------VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccHHHH-------------------HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 32111100 0111 2345666666666666532 1222345677777788888773
|
|
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-12 Score=113.65 Aligned_cols=90 Identities=22% Similarity=0.254 Sum_probs=81.2
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.+|.|+||.|..++. .+|..+|+|+++... .++.+...+|..+|+.+.||.++++++.|.+.+.+||||
T Consensus 44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm 123 (355)
T KOG0616|consen 44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM 123 (355)
T ss_pred hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence 5688889999999999999996 568899999997654 345667889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||.+||.|+.++|+
T Consensus 124 eyv~GGElFS~Lrk 137 (355)
T KOG0616|consen 124 EYVPGGELFSYLRK 137 (355)
T ss_pred eccCCccHHHHHHh
Confidence 99999999999987
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.8e-12 Score=118.67 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=84.1
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
+....++|+....||.|..++||+|+. +.+..||||++.-.. ........+|+..|+.++||||++++.+|..+.++|
T Consensus 21 ~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LW 100 (516)
T KOG0582|consen 21 FPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELW 100 (516)
T ss_pred CCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeE
Confidence 334557899999999999999999995 778999999997544 334578899999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||.||.+||+.+.|+.
T Consensus 101 vVmpfMa~GS~ldIik~ 117 (516)
T KOG0582|consen 101 VVMPFMAGGSLLDIIKT 117 (516)
T ss_pred EeehhhcCCcHHHHHHH
Confidence 99999999999999975
|
|
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-12 Score=125.85 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=79.9
Q ss_pred hhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEc
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSN 501 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 501 (524)
....++|+..+.||+|+||.||+|+. .++..||||+++... ....+.+.+|+.+++.+ +||||++++++|..
T Consensus 31 ~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~ 110 (375)
T cd05104 31 EFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTV 110 (375)
T ss_pred ccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeecc
Confidence 33455788999999999999999973 235679999996543 33456789999999999 89999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..++|||||++|+|.+++++
T Consensus 111 ~~~~~lv~E~~~~g~L~~~l~~ 132 (375)
T cd05104 111 GGPTLVITEYCCYGDLLNFLRR 132 (375)
T ss_pred CCcceeeehhccCCcHHHHHHh
Confidence 9999999999999999999964
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=124.01 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=78.7
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..|+|||
T Consensus 2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E 81 (381)
T cd05626 2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD 81 (381)
T ss_pred CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence 577889999999999999996 568899999997543 2345678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 82 ~~~gg~L~~~l~~ 94 (381)
T cd05626 82 YIPGGDMMSLLIR 94 (381)
T ss_pred cCCCCcHHHHHHh
Confidence 9999999998854
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=123.42 Aligned_cols=90 Identities=17% Similarity=0.229 Sum_probs=79.2
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||+|+. .+++.||||++.... ......+.+|+++++.++||||+++++++.+++..|+||
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~ 80 (364)
T cd05599 1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM 80 (364)
T ss_pred CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence 3688899999999999999996 468899999997542 234556889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.+++++
T Consensus 81 E~~~~g~L~~~l~~ 94 (364)
T cd05599 81 EYLPGGDMMTLLMK 94 (364)
T ss_pred CCCCCcHHHHHHHH
Confidence 99999999999854
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=122.76 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=78.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|...+.||+|+||.||++.. .+++.||||.+.... ....+.+.+|+++++.++||||+++++++.+++..|+||
T Consensus 1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~ 80 (377)
T cd05629 1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM 80 (377)
T ss_pred CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence 3688889999999999999986 578899999986532 233567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 E~~~gg~L~~~l~~ 94 (377)
T cd05629 81 EFLPGGDLMTMLIK 94 (377)
T ss_pred eCCCCCcHHHHHHh
Confidence 99999999998853
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.5e-13 Score=125.91 Aligned_cols=206 Identities=20% Similarity=0.211 Sum_probs=103.3
Q ss_pred CCCCCCEEEccCCCCCCCCC-hhHhcCcccccEEEeccCcccc--cCCccccCCCCCCeEEcccCcCcccCCcc-ccCCC
Q 040301 74 NCRHLKALSLGSNPLGGILP-PVIGNFSASFQNFYAFNCKLKG--NIPQEIGNLRGLTLLSLFNNDLNGTISPT-MGRLK 149 (524)
Q Consensus 74 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~ 149 (524)
++.+|+.+.|.++.+....- .....++ +++.|+|+.|-+.. .+-.....|++|+.|+++.|++....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 44555555555555542211 2333343 56666666655543 12233455666777777766665222111 12355
Q ss_pred CCCeEecccCcccc-cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccC--hhccCCCCCCEE
Q 040301 150 QLRGLSLKYNNLEG-SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP--SSLWSLEYILMI 226 (524)
Q Consensus 150 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L 226 (524)
.|+.|.|+.|+++- .+-..+..+|+|+.|+|.+|............+..|+.|||++|.+.. .+ .....++.|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhh
Confidence 66666666666652 122334456666666666664222222233445566666666666542 22 334556666666
Q ss_pred EcCCCcCccc-CCcC-----ccCCCCCCEEEcCCCcCcccc--ccccccCCCCEEEccCCccc
Q 040301 227 NLSSNSLNDS-LPSN-----IQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQ 281 (524)
Q Consensus 227 ~L~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~L~~N~l~ 281 (524)
+++.+.+.+. .|+. ...+++|++|++..|++.... ..+..+++|+.|.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6666665532 1111 234456666666666654333 33344445555555555444
|
|
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=116.36 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=78.5
Q ss_pred hccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..+|+..+.||+|+||.||+|++. .+..||+|.++... ......|.+|+..+++++||||+++++++..++..++
T Consensus 4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l 83 (266)
T cd05064 4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMI 83 (266)
T ss_pred hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEE
Confidence 356888899999999999999852 35679999997543 3345678999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 84 v~e~~~~~~L~~~l~~ 99 (266)
T cd05064 84 VTEYMSNGALDSFLRK 99 (266)
T ss_pred EEEeCCCCcHHHHHHh
Confidence 9999999999999864
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=124.00 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=80.9
Q ss_pred hhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCC-CCCccceeEEEE
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVC-HRNLIKILSSCS 500 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~ 500 (524)
+....++|...+.||+|+||.||+|.+. .+..||+|+++... ....+.+.+|++++.++. |||||+++++|.
T Consensus 32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~ 111 (401)
T cd05107 32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACT 111 (401)
T ss_pred ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEc
Confidence 4556667888899999999999999852 23579999997543 333457889999999997 999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
..+..++|||||++|+|.+++++
T Consensus 112 ~~~~~~iv~E~~~~g~L~~~l~~ 134 (401)
T cd05107 112 KGGPIYIITEYCRYGDLVDYLHR 134 (401)
T ss_pred cCCCcEEEEeccCCCcHHHHHHh
Confidence 99999999999999999999964
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-13 Score=125.65 Aligned_cols=207 Identities=26% Similarity=0.293 Sum_probs=132.7
Q ss_pred cCCCCCCeEEcccCcCcccCC--ccccCCCCCCeEecccCccccc--CCccccCCCCCCEEEccCCcccccCCcc-ccCC
Q 040301 122 GNLRGLTLLSLFNNDLNGTIS--PTMGRLKQLRGLSLKYNNLEGS--IPYDLCHLKLMYGIRLTGNKLSGHIPPC-LASL 196 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l 196 (524)
+++.+|+...|.++.+. ..+ .....|++++.|||+.|-+..- +......+|+|+.|+++.|++.....+. -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46777888888777765 222 3556678888888888877632 2234556788888888888875322221 1246
Q ss_pred CCCCEEEccCCcCCC-ccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEE
Q 040301 197 TSLRELHLGSNKLTS-SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETL 273 (524)
Q Consensus 197 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L 273 (524)
++|+.|.++.|.++. .+......+|+|+.|+|.+|..-.........+..|+.|||++|.+...+ ...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 788888888888873 23345567888888888888532223333445678888888888887665 566778888888
Q ss_pred EccCCcccCCC-ccc-----ccCCCCCCEEeCCCCcCCCC-CcccccCCCCCCeEEccCCcCc
Q 040301 274 SLASNQFQGPI-PES-----VGSLISLESLDLSGNNLSGK-IPKSLETLSHLKQFNASHNRLE 329 (524)
Q Consensus 274 ~L~~N~l~~~~-~~~-----~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~l~l~~n~l~ 329 (524)
+++.+.+.... |+. ...+++|+.|+++.|++... .-..+..+++|+.+.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 88888777532 222 24467777777777777521 1123344455555555555543
|
|
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=118.18 Aligned_cols=91 Identities=22% Similarity=0.277 Sum_probs=77.7
Q ss_pred hccccccCcccCCCCceEEEEEeCC-----------------CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISD-----------------WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIK 494 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~-----------------~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~ 494 (524)
.++|...+.||+|+||.||+|...+ +..||+|.+.... .....+|.+|++++.+++||||++
T Consensus 4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 83 (304)
T cd05096 4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIR 83 (304)
T ss_pred hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeE
Confidence 3568888999999999999997522 3369999987643 334567999999999999999999
Q ss_pred eeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 495 ILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 495 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++++.+.+..++||||+++|+|.+++..
T Consensus 84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 112 (304)
T cd05096 84 LLGVCVDEDPLCMITEYMENGDLNQFLSS 112 (304)
T ss_pred EEEEEecCCceEEEEecCCCCcHHHHHHh
Confidence 99999999999999999999999998853
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=121.09 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=81.6
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch---HHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcce
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~ 506 (524)
....|+..+.+|+|.||.||+++.+ +|+.+|+|.+.+... .....+.+|+.+|+++. |||||.+++.|.+....+
T Consensus 33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~ 112 (382)
T KOG0032|consen 33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY 112 (382)
T ss_pred ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence 3456888899999999999999974 599999999976543 23468899999999998 999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|||+|+||+|++.|.+
T Consensus 113 lvmEL~~GGeLfd~i~~ 129 (382)
T KOG0032|consen 113 LVMELCEGGELFDRIVK 129 (382)
T ss_pred EEEEecCCchHHHHHHH
Confidence 99999999999999865
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.9e-12 Score=122.83 Aligned_cols=93 Identities=22% Similarity=0.355 Sum_probs=77.6
Q ss_pred hhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcC
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNP 502 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~ 502 (524)
.+.++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.++..+ +||||++++++|...
T Consensus 4 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~ 83 (338)
T cd05102 4 FPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKP 83 (338)
T ss_pred cchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCC
Confidence 4557799999999999999999974 234679999997543 33456789999999999 899999999998764
Q ss_pred -CcceEEEcccCCCCHHHHHHh
Q 040301 503 -DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 -~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...++||||+++|+|.+++++
T Consensus 84 ~~~~~lv~ey~~~g~L~~~l~~ 105 (338)
T cd05102 84 NGPLMVIVEFCKYGNLSNFLRA 105 (338)
T ss_pred CCceEEEEecCCCCcHHHHHHh
Confidence 468999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=116.97 Aligned_cols=93 Identities=27% Similarity=0.404 Sum_probs=84.2
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.+..+|+..+.||+|+||.||+|...++..+|+|.+........+++.+|+.+++.++||||+++++++...+..++|||
T Consensus 3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e 82 (261)
T cd05148 3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE 82 (261)
T ss_pred CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence 45678999999999999999999987788999999987665556789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 83 ~~~~~~L~~~~~~ 95 (261)
T cd05148 83 LMEKGSLLAFLRS 95 (261)
T ss_pred ecccCCHHHHHhc
Confidence 9999999999864
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-11 Score=119.91 Aligned_cols=90 Identities=19% Similarity=0.246 Sum_probs=79.4
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.+|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.++++++||||+++++++..++..++||
T Consensus 18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 97 (329)
T PTZ00263 18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL 97 (329)
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence 5688889999999999999997 468899999997543 234567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 98 e~~~~~~L~~~l~~ 111 (329)
T PTZ00263 98 EFVVGGELFTHLRK 111 (329)
T ss_pred cCCCCChHHHHHHH
Confidence 99999999998864
|
|
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=120.89 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=80.6
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc----h-HHHHHHHHHHHHHhcCC-CCCccceeEEEEcCC
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL----E-RAFRSFDSECEVLRNVC-HRNLIKILSSCSNPD 503 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~----~-~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~ 503 (524)
...+.|...+.+|+|.||+|+.|.. .+++.||+|.+++.. . ...+...+|+.++++++ ||||++++.++....
T Consensus 14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~ 93 (370)
T KOG0583|consen 14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT 93 (370)
T ss_pred cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence 4456899999999999999999985 578999999776531 1 23456678999999999 999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+++|||||.||+|++++.+
T Consensus 94 ~~~ivmEy~~gGdL~~~i~~ 113 (370)
T KOG0583|consen 94 KIYIVMEYCSGGDLFDYIVN 113 (370)
T ss_pred eEEEEEEecCCccHHHHHHH
Confidence 99999999999999999865
|
|
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-11 Score=118.84 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=80.3
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||++... ++..+|+|.+.... ......+.+|+++++.++||||++++++|.+++..++|||
T Consensus 4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 83 (333)
T cd06650 4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 83 (333)
T ss_pred hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence 367999999999999999999974 67889999887543 3345678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 84 ~~~~~~L~~~l~~ 96 (333)
T cd06650 84 HMDGGSLDQVLKK 96 (333)
T ss_pred cCCCCcHHHHHHH
Confidence 9999999999864
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=118.85 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=78.8
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|++++++++||||+++++++.+++..++||
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 80 (291)
T cd05612 1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM 80 (291)
T ss_pred CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence 36888899999999999999964 68899999996532 234567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 e~~~~~~L~~~~~~ 94 (291)
T cd05612 81 EYVPGGELFSYLRN 94 (291)
T ss_pred eCCCCCCHHHHHHH
Confidence 99999999999864
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-11 Score=119.34 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=79.1
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++..++||||+++++++..++..|+||
T Consensus 1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~ 80 (333)
T cd05600 1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM 80 (333)
T ss_pred CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence 36888899999999999999974 58899999997543 234567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 e~~~g~~L~~~l~~ 94 (333)
T cd05600 81 EYVPGGDFRTLLNN 94 (333)
T ss_pred eCCCCCCHHHHHHH
Confidence 99999999999853
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=121.64 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=78.5
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
+|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++.+++..|+|||
T Consensus 2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E 81 (376)
T cd05598 2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD 81 (376)
T ss_pred CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence 688899999999999999996 468899999996532 2234668899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
||++|+|.+++++
T Consensus 82 ~~~~g~L~~~i~~ 94 (376)
T cd05598 82 YIPGGDMMSLLIR 94 (376)
T ss_pred CCCCCcHHHHHHh
Confidence 9999999999864
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-11 Score=121.57 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=78.5
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++++++|||||++++++.+++..|+|||
T Consensus 2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E 81 (382)
T cd05625 2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD 81 (382)
T ss_pred CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence 478889999999999999996 567889999997543 2345678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
||++|+|.+++++
T Consensus 82 ~~~gg~L~~~l~~ 94 (382)
T cd05625 82 YIPGGDMMSLLIR 94 (382)
T ss_pred CCCCCcHHHHHHh
Confidence 9999999998854
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-11 Score=118.01 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=80.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+++. .++..+|+|.+.... ....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 83 (331)
T cd06649 4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 83 (331)
T ss_pred cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence 36789999999999999999996 467889999987543 3345679999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 84 ~~~~~~L~~~l~~ 96 (331)
T cd06649 84 HMDGGSLDQVLKE 96 (331)
T ss_pred cCCCCcHHHHHHH
Confidence 9999999999864
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-11 Score=119.98 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=78.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+.++.+++||||+++++++.+....|+||
T Consensus 1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~ 80 (363)
T cd05628 1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM 80 (363)
T ss_pred CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence 3688899999999999999986 468899999997543 223456889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.+++++
T Consensus 81 E~~~gg~L~~~l~~ 94 (363)
T cd05628 81 EFLPGGDMMTLLMK 94 (363)
T ss_pred cCCCCCcHHHHHHh
Confidence 99999999999864
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-12 Score=117.18 Aligned_cols=136 Identities=27% Similarity=0.379 Sum_probs=104.6
Q ss_pred ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCC
Q 040301 167 YDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKV 246 (524)
Q Consensus 167 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 246 (524)
..+..|+.|+.++|++|.|+ .+.++..-+|.++.|+++.|.+. .+ +.+..+++|+.|||++|.++ .+.+|=..+-+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 34556777888888888887 56677777888888888888887 33 33788888999999988887 35566667788
Q ss_pred CCEEEcCCCcCccccccccccCCCCEEEccCCcccCC-CcccccCCCCCCEEeCCCCcCCCC
Q 040301 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGP-IPESVGSLISLESLDLSGNNLSGK 307 (524)
Q Consensus 247 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~ 307 (524)
+++|.++.|.+... +.+..+-+|..|++++|+|... ....++++|.|+.+.|.+|.+.+.
T Consensus 354 IKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred EeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88999999887632 3455666788899999988752 235688999999999999999843
|
|
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-11 Score=118.86 Aligned_cols=91 Identities=25% Similarity=0.346 Sum_probs=78.1
Q ss_pred hccccccCcccCCCCceEEEEEeC-C-CCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-D-WTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~-~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.++|+..+.||+|+||.||+|... + +..||+|.+.... ....+.+.+|+++++.++||||+++++++.+++..|+
T Consensus 29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l 108 (340)
T PTZ00426 29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL 108 (340)
T ss_pred hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence 456888899999999999999853 2 3679999996532 2345678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 109 v~Ey~~~g~L~~~i~~ 124 (340)
T PTZ00426 109 VLEFVIGGEFFTFLRR 124 (340)
T ss_pred EEeCCCCCcHHHHHHH
Confidence 9999999999999864
|
|
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=114.09 Aligned_cols=89 Identities=24% Similarity=0.290 Sum_probs=78.3
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
.+|+..+.||+|+||.||++.+.++..+|+|.+..... ..++|.+|+.++++++||||+++++++...+..++||||++
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~ 82 (256)
T cd05114 4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAM-SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFME 82 (256)
T ss_pred HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCc-cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCC
Confidence 45778889999999999999987777899998864332 34678899999999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+|+|.+++++
T Consensus 83 ~~~L~~~~~~ 92 (256)
T cd05114 83 NGCLLNYLRQ 92 (256)
T ss_pred CCcHHHHHHh
Confidence 9999999863
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-11 Score=114.21 Aligned_cols=95 Identities=25% Similarity=0.325 Sum_probs=83.4
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++.+++++.....+|+|+||.||+|.. .++..||+|.+........+.+.+|++++++++|+||+++++++..++..++
T Consensus 3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l 82 (268)
T cd06624 3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKI 82 (268)
T ss_pred cccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEE
Confidence 445666677778999999999999996 4678899999977665567789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|+||+++++|.+++++
T Consensus 83 v~e~~~~~~L~~~l~~ 98 (268)
T cd06624 83 FMEQVPGGSLSALLRS 98 (268)
T ss_pred EEecCCCCCHHHHHHH
Confidence 9999999999999863
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-11 Score=120.36 Aligned_cols=94 Identities=12% Similarity=0.185 Sum_probs=81.0
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
....++|+..+.||+|+||.||++.. .+++.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+++..
T Consensus 39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~ 118 (370)
T cd05596 39 RMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYL 118 (370)
T ss_pred CCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 34567899999999999999999996 468899999997532 22345578999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|+|||||++|+|.+++++
T Consensus 119 ~lv~Ey~~gg~L~~~l~~ 136 (370)
T cd05596 119 YMVMEYMPGGDLVNLMSN 136 (370)
T ss_pred EEEEcCCCCCcHHHHHHh
Confidence 999999999999998864
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-12 Score=116.01 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=78.8
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
-|.++.++|+|+||.||+|.. ..|+.+|+|.++.. .+.++...||.+|..++.|++|++||.|.....+|||||||-
T Consensus 34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCG 111 (502)
T KOG0574|consen 34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCG 111 (502)
T ss_pred HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcC
Confidence 477788999999999999996 57899999998754 367889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
.||..|.+|-
T Consensus 112 AGSiSDI~R~ 121 (502)
T KOG0574|consen 112 AGSISDIMRA 121 (502)
T ss_pred CCcHHHHHHH
Confidence 9999999874
|
|
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-11 Score=119.84 Aligned_cols=96 Identities=11% Similarity=0.195 Sum_probs=82.1
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
.+....++|+..+.||+|+||.||++.. .+++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++.+++
T Consensus 37 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~ 116 (370)
T cd05621 37 KLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK 116 (370)
T ss_pred hcCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC
Confidence 3444567899999999999999999997 467889999996532 223456889999999999999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..|+|||||++|+|.+++++
T Consensus 117 ~~~lv~Ey~~gg~L~~~l~~ 136 (370)
T cd05621 117 YLYMVMEYMPGGDLVNLMSN 136 (370)
T ss_pred EEEEEEcCCCCCcHHHHHHh
Confidence 99999999999999998864
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-11 Score=119.36 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=82.5
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.....|.+...||+|.|+.|..|+. .++..||+|.+++.. ....+.+.+|+++|..++|||||+++.+...+..+|+
T Consensus 53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl 132 (596)
T KOG0586|consen 53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL 132 (596)
T ss_pred ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence 4556789999999999999999996 578999999998754 3334568899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+.+|.+++|+.+
T Consensus 133 V~eya~~ge~~~yl~~ 148 (596)
T KOG0586|consen 133 VMEYASGGELFDYLVK 148 (596)
T ss_pred EEEeccCchhHHHHHh
Confidence 9999999999999964
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-12 Score=116.80 Aligned_cols=204 Identities=23% Similarity=0.268 Sum_probs=139.5
Q ss_pred ccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccC-CcccccCCccccCCCCC
Q 040301 121 IGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG-NKLSGHIPPCLASLTSL 199 (524)
Q Consensus 121 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L 199 (524)
+.-+.+|+.+.++.+.-..+.. ....-|.|+.+...+..++. .| .+.....+...+-.. ....|.....+.....|
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred hHHhhhhheeeeeccchhheec-eeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 3445566666666654332221 11223566777665554441 11 111122222221111 11222222334445678
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCc
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQ 279 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~ 279 (524)
+.+|+++|.|+ .+.+++.-+|.++.|++++|.+... +.+..+++|+.||+++|.++....+-..+-+.++|.|++|.
T Consensus 287 telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 287 TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 99999999998 6788899999999999999999743 34888999999999999998777666777889999999998
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCCCC-cccccCCCCCCeEEccCCcCcccc
Q 040301 280 FQGPIPESVGSLISLESLDLSGNNLSGKI-PKSLETLSHLKQFNASHNRLEGKI 332 (524)
Q Consensus 280 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~l~l~~n~l~~~~ 332 (524)
+... ..+..+-+|..||+++|+|.... -..++++|.|+.+.+.+||+.+..
T Consensus 364 iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 364 IETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred Hhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 8742 45778889999999999997322 246889999999999999998643
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-11 Score=107.77 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=30.8
Q ss_pred CCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccc-cCCCCCCeEEcccCcCcccC-CccccCCCCCC
Q 040301 75 CRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTI-SPTMGRLKQLR 152 (524)
Q Consensus 75 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 152 (524)
+.+|+.|||++|.|.... .+..+. +|++|++++|.++.. ...+ ..+++|+.|++++|++.... -..+..+++|+
T Consensus 41 l~~L~~L~Ls~N~I~~l~--~l~~L~-~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE--GLPGLP-RLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS--S--T--T----T-T--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hcCCCEEECCCCCCcccc--CccChh-hhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 344444444444444221 122333 444444444444422 1122 23555555555555554321 13444556666
Q ss_pred eEecccCcccccC---CccccCCCCCCEEEc
Q 040301 153 GLSLKYNNLEGSI---PYDLCHLKLMYGIRL 180 (524)
Q Consensus 153 ~L~L~~n~i~~~~---~~~~~~l~~L~~L~l 180 (524)
.|++.+|.++..- ...+..+|+|+.||-
T Consensus 117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6666666665321 123455666666654
|
|
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-11 Score=121.20 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=81.0
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEE
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSC 499 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~ 499 (524)
.+....++|+..+.||+|+||.||+|.. .++..||+|.+.... ....+.+.+|+++++.+ +|+|||+++++|
T Consensus 32 ~~~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~ 111 (374)
T cd05106 32 KWEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGAC 111 (374)
T ss_pred cccccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEe
Confidence 3445566899999999999999999884 223579999997543 33456788999999999 899999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...+..++|||||++|+|.+++++
T Consensus 112 ~~~~~~~lv~ey~~~g~L~~~l~~ 135 (374)
T cd05106 112 THGGPVLVITEYCCYGDLLNFLRK 135 (374)
T ss_pred cCCCCeEEeHhhccCCcHHHHHHh
Confidence 999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-12 Score=122.29 Aligned_cols=92 Identities=23% Similarity=0.254 Sum_probs=78.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-HHHHHHHHHHHHHhcCC-CCCccceeEEEEcCC-cceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVC-HRNLIKILSSCSNPD-FKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~-~~~l 507 (524)
..+.|...+.+|.|.||.||+|+- .++..||||++++... .....=.||+..|++++ |||||++.+.+.+.+ .+|+
T Consensus 8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f 87 (538)
T KOG0661|consen 8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF 87 (538)
T ss_pred HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence 456788999999999999999994 6788999999976543 22233469999999998 999999999999988 8999
Q ss_pred EEcccCCCCHHHHHHhC
Q 040301 508 MWGRLLNISITIIRRHL 524 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~~ 524 (524)
|||||+. +|.++|+++
T Consensus 88 VfE~Md~-NLYqLmK~R 103 (538)
T KOG0661|consen 88 VFEFMDC-NLYQLMKDR 103 (538)
T ss_pred eHHhhhh-hHHHHHhhc
Confidence 9999985 999999864
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-11 Score=107.64 Aligned_cols=105 Identities=28% Similarity=0.341 Sum_probs=23.7
Q ss_pred CccEEEccCCcccccCCcccc-cccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 21 IYWVMDLSSNSFSGHIPNTFG-NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.++.|+|++|+|+ .+ +.++ .+.+|+.|+|++|+|+.+ ..+..++.|++|++++|.|+...+.....+
T Consensus 20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l----------~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL----------EGLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S------------TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred ccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc----------cCccChhhhhhcccCCCCCCccccchHHhC
Confidence 3455555555555 22 1233 344555555555555544 233344555555555555553222111223
Q ss_pred cccccEEEeccCccccc-CCccccCCCCCCeEEcccCcCc
Q 040301 100 SASFQNFYAFNCKLKGN-IPQEIGNLRGLTLLSLFNNDLN 138 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 138 (524)
+ +|++|++++|++... .-..++.+++|+.|++.+|.+.
T Consensus 88 p-~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 P-NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T-T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred C-cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 3 555555555555421 1123344555555555555554
|
|
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.6e-11 Score=114.49 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=78.4
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
+|+..+.||+|+||.||++.. .++..+|+|.+.... .....++.+|++++++++||||++++++|.+++..++||||+
T Consensus 2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~ 81 (308)
T cd06615 2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHM 81 (308)
T ss_pred CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeecc
Confidence 688889999999999999996 467889999886543 334567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 82 ~~~~L~~~l~~ 92 (308)
T cd06615 82 DGGSLDQVLKK 92 (308)
T ss_pred CCCcHHHHHHh
Confidence 99999999864
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-11 Score=113.38 Aligned_cols=91 Identities=24% Similarity=0.326 Sum_probs=77.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC--cceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD--FKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~--~~~lv~ 509 (524)
..++...+.+|+|.||.||.+.. ++|...|||.+........+...+|+++|++++|||||+++|.....+ .+++.|
T Consensus 16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~m 95 (313)
T KOG0198|consen 16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFM 95 (313)
T ss_pred cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeee
Confidence 34577788999999999999997 458999999997654333667889999999999999999999865555 699999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|||.+++++
T Consensus 96 Ey~~~GsL~~~~~~ 109 (313)
T KOG0198|consen 96 EYAPGGSLSDLIKR 109 (313)
T ss_pred eccCCCcHHHHHHH
Confidence 99999999999975
|
|
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.9e-11 Score=116.35 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=78.6
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||++.. .+++.||+|.+.... ....+.+.+|+.++..++|+||+++++++.+++..|+||
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (331)
T cd05597 1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM 80 (331)
T ss_pred CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence 3688899999999999999996 468899999997532 233456889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 e~~~g~~L~~~l~~ 94 (331)
T cd05597 81 DYYVGGDLLTLLSK 94 (331)
T ss_pred ecCCCCcHHHHHHH
Confidence 99999999999864
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-11 Score=113.71 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=78.3
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
-++|+..+.+|.|..|.||.+... ++..+|+|++++.. .+...+...|-+||+.++||.++.+|+.+.++...|+|
T Consensus 76 l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~ 155 (459)
T KOG0610|consen 76 LRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLV 155 (459)
T ss_pred HHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEE
Confidence 346777889999999999999975 35789999998654 23345567788999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||+||+|+...++
T Consensus 156 meyCpGGdL~~Lrqk 170 (459)
T KOG0610|consen 156 MEYCPGGDLHSLRQK 170 (459)
T ss_pred EecCCCccHHHHHhh
Confidence 999999999998865
|
|
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.6e-11 Score=118.29 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=84.2
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
..++....++|+..+.||+|+||.||++.. .+++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++.+
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~ 114 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 114 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence 455566678999999999999999999997 467889999996432 2334567899999999999999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..++|||||++|+|.+++++
T Consensus 115 ~~~~~lv~Ey~~gg~L~~~~~~ 136 (371)
T cd05622 115 DRYLYMVMEYMPGGDLVNLMSN 136 (371)
T ss_pred CCEEEEEEcCCCCCcHHHHHHh
Confidence 9999999999999999998864
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-11 Score=112.61 Aligned_cols=91 Identities=18% Similarity=0.318 Sum_probs=80.7
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..++|+..+.+|+|+||.||+|...++..||+|.+..... ..+.+.+|+.++++++|+||+++++++...+..++||||
T Consensus 4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 82 (261)
T cd05072 4 PRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEY 82 (261)
T ss_pred chHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCch-hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEec
Confidence 3467889999999999999999987778899999865432 357889999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 83 ~~~~~L~~~l~~ 94 (261)
T cd05072 83 MAKGSLLDFLKS 94 (261)
T ss_pred CCCCcHHHHHHH
Confidence 999999999863
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-12 Score=120.26 Aligned_cols=244 Identities=22% Similarity=0.270 Sum_probs=152.9
Q ss_pred CCCCCCCEEEccCCCCCCC----CChhHhcCcccccEEEeccCcc---cccCC-------ccccCCCCCCeEEcccCcCc
Q 040301 73 TNCRHLKALSLGSNPLGGI----LPPVIGNFSASFQNFYAFNCKL---KGNIP-------QEIGNLRGLTLLSLFNNDLN 138 (524)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~l~~n~l---~~~~~-------~~~~~l~~L~~L~l~~n~l~ 138 (524)
..+..++.|+|++|.+... +...+...+ +|+..++++-.. ...+| +.+...++|++|+||.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3455666666666666533 233344444 555555554311 11222 23345567888888888776
Q ss_pred ccCCcc----ccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCc--
Q 040301 139 GTISPT----MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSS-- 212 (524)
Q Consensus 139 ~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 212 (524)
..-+.. +..+..|++|+|.+|.+.-.--..++. .|..|. .+. ....-+.|+++...+|++...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k-------k~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK-------KAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh-------ccCCCcceEEEEeeccccccccH
Confidence 443333 345677777777777776211111110 011111 111 122335788888888887633
Q ss_pred --cChhccCCCCCCEEEcCCCcCccc----CCcCccCCCCCCEEEcCCCcCcccc-----ccccccCCCCEEEccCCccc
Q 040301 213 --IPSSLWSLEYILMINLSSNSLNDS----LPSNIQTLKVLRVLDLSRNQLSGDI-----STIGALVDLETLSLASNQFQ 281 (524)
Q Consensus 213 --~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~l~~L~~L~L~~N~l~ 281 (524)
+...|...+.|+.+.++.|.|... +...+..+++|+.||+..|.++... ..++.+++|+.|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 234566778888888888887531 2234677899999999999886432 56778889999999999888
Q ss_pred CCCcccc-----cCCCCCCEEeCCCCcCCCC----CcccccCCCCCCeEEccCCcC
Q 040301 282 GPIPESV-----GSLISLESLDLSGNNLSGK----IPKSLETLSHLKQFNASHNRL 328 (524)
Q Consensus 282 ~~~~~~~-----~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~l~l~~n~l 328 (524)
..-...| ...|+|+.|.+.+|.++.. +...+...+.|..|++++|.+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6443333 3478999999999999743 223455688999999999998
|
|
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.8e-11 Score=111.87 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=80.0
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..+|+..+.+|+|+||.||+|+. .+++.+|+|.+..........+.+|+.++++++||||+++++++..++..++||||
T Consensus 8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~ 87 (267)
T cd06646 8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEY 87 (267)
T ss_pred hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeC
Confidence 35789999999999999999996 56888999999755444456688999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 88 ~~~~~L~~~~~~ 99 (267)
T cd06646 88 CGGGSLQDIYHV 99 (267)
T ss_pred CCCCcHHHHHHh
Confidence 999999998853
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-11 Score=114.00 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=71.5
Q ss_pred CcccCCCCceEEEEEeCCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCcceEEEccc
Q 040301 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDFKALMWGRL 512 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~~lv~e~~ 512 (524)
..+|+|+++.||+|.+ +|+.||||.++.... ...+.|.+|+.++++++|||||+++|++.+ ....++||||+
T Consensus 26 ~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~ 104 (283)
T PHA02988 26 VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC 104 (283)
T ss_pred eEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence 5789999999999998 678999999975432 224678899999999999999999999977 35689999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 105 ~~g~L~~~l~~ 115 (283)
T PHA02988 105 TRGYLREVLDK 115 (283)
T ss_pred CCCcHHHHHhh
Confidence 99999999864
|
|
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.19 E-value=7e-11 Score=113.76 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=76.2
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.|+..+.||+|+||.||++.. .+++.||+|.+.... ......+.+|+.++++++||||+++++++.+++..++|||
T Consensus 1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (285)
T cd05605 1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT 80 (285)
T ss_pred CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence 377788999999999999996 468899999997543 2234567889999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|.++++
T Consensus 81 ~~~~~~L~~~~~ 92 (285)
T cd05605 81 LMNGGDLKFHIY 92 (285)
T ss_pred ccCCCcHHHHHH
Confidence 999999998874
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-11 Score=115.62 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=78.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||++.. .+++.||+|.+.... ......+.+|+.++...+|++|+++++++.+++..|+||
T Consensus 1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~ 80 (331)
T cd05624 1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM 80 (331)
T ss_pred CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence 3688889999999999999996 467889999997532 223456888999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 Ey~~gg~L~~~l~~ 94 (331)
T cd05624 81 DYYVGGDLLTLLSK 94 (331)
T ss_pred eCCCCCcHHHHHHH
Confidence 99999999999864
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.4e-11 Score=112.87 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=82.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..++|++.+.+|.|+||.||++.. .++..+|+|.+........+.|.+|++++++++||||+++++++..++..++|||
T Consensus 3 ~~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (280)
T cd06611 3 PNDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIE 82 (280)
T ss_pred chhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEee
Confidence 356789999999999999999997 4678899999976655566789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 83 ~~~~~~L~~~~~~ 95 (280)
T cd06611 83 FCDGGALDSIMLE 95 (280)
T ss_pred ccCCCcHHHHHHH
Confidence 9999999998864
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-11 Score=113.98 Aligned_cols=85 Identities=26% Similarity=0.361 Sum_probs=71.7
Q ss_pred cCcccCCCCceEEEEEeC-----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 439 CNLLGTGSFGSVYKGTIS-----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.+.||.|.||.||+|.+. .+..|+||.++... ....++|.+|++.+++++||||++++|+|...+..++|||||
T Consensus 4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~ 83 (259)
T PF07714_consen 4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYC 83 (259)
T ss_dssp EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--
T ss_pred eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence 468999999999999975 24679999996543 345788999999999999999999999999888899999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.++|++
T Consensus 84 ~~g~L~~~L~~ 94 (259)
T PF07714_consen 84 PGGSLDDYLKS 94 (259)
T ss_dssp TTEBHHHHHHH
T ss_pred ccccccccccc
Confidence 99999999975
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-11 Score=111.85 Aligned_cols=92 Identities=18% Similarity=0.252 Sum_probs=75.1
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--HHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--RAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFK 505 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~ 505 (524)
...++|+..+.|++|.||.||+|+. ++++.||+|+++.... +-.=-..|||.+|.+++|||||.+..+..- -+.+
T Consensus 73 rsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~i 152 (419)
T KOG0663|consen 73 RSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKI 152 (419)
T ss_pred ccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEecccccee
Confidence 4556799999999999999999996 5678899999975442 111234689999999999999999998864 3579
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|||||||+. +|...|..
T Consensus 153 y~VMe~~Eh-DLksl~d~ 169 (419)
T KOG0663|consen 153 YIVMEYVEH-DLKSLMET 169 (419)
T ss_pred eeeHHHHHh-hHHHHHHh
Confidence 999999996 88887754
|
|
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-11 Score=120.47 Aligned_cols=92 Identities=23% Similarity=0.275 Sum_probs=80.9
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
....|....+||+|..|.||.|.. .+++.||||++........+-..+|+.+|+..+|+|||+++..|...+++|+|||
T Consensus 271 P~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVME 350 (550)
T KOG0578|consen 271 PRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVME 350 (550)
T ss_pred hhhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEe
Confidence 345678888999999999999994 6788899999987654456678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
||+||+|.|.+.+
T Consensus 351 ym~ggsLTDvVt~ 363 (550)
T KOG0578|consen 351 YMEGGSLTDVVTK 363 (550)
T ss_pred ecCCCchhhhhhc
Confidence 9999999988754
|
|
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.4e-11 Score=116.90 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=78.6
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||++.. .+++.||+|.+.... ....+.+.+|+.++..++||+|+++++++.+++..|+||
T Consensus 1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~ 80 (360)
T cd05627 1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM 80 (360)
T ss_pred CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence 3688889999999999999996 468899999997533 233567888999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.+++++
T Consensus 81 E~~~gg~L~~~l~~ 94 (360)
T cd05627 81 EFLPGGDMMTLLMK 94 (360)
T ss_pred eCCCCccHHHHHHh
Confidence 99999999999864
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.2e-11 Score=113.12 Aligned_cols=94 Identities=22% Similarity=0.304 Sum_probs=79.6
Q ss_pred hhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 502 (524)
+...++|+..+.||+|+||.||+|... .+..||+|.+.... ......+.+|+.++++++||||+++++++.+.
T Consensus 2 ~~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~ 81 (288)
T cd05061 2 EVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG 81 (288)
T ss_pred cccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence 345678999999999999999998742 24579999886443 23345688999999999999999999999999
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..++||||+++|+|.+++++
T Consensus 82 ~~~~lv~e~~~~g~L~~~l~~ 102 (288)
T cd05061 82 QPTLVVMELMAHGDLKSYLRS 102 (288)
T ss_pred CCcEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999964
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-11 Score=124.65 Aligned_cols=87 Identities=25% Similarity=0.326 Sum_probs=74.4
Q ss_pred ccccCcccCCCCceEEEEEe-CCCC----EEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWT----NVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
...+++||+|+||+||+|.+ +.|+ +||+|.+.... .+...++..|+-+|.+++|||+++++|+|.... ..||+
T Consensus 698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvt 776 (1177)
T KOG1025|consen 698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVT 776 (1177)
T ss_pred hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHH
Confidence 34567999999999999996 5553 58999886533 456788999999999999999999999998766 88999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
+||+.|+|.||+|.
T Consensus 777 q~mP~G~LlDyvr~ 790 (1177)
T KOG1025|consen 777 QLMPLGCLLDYVRE 790 (1177)
T ss_pred HhcccchHHHHHHH
Confidence 99999999999974
|
|
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.7e-11 Score=117.96 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=75.5
Q ss_pred hhccccccCcccCCCCceEEEEEeC---CCC--EEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS---DWT--NVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~---~~~--~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
..+..+..++||.|.||.||+|.+. .|. .||||..+... ....+.|.+|..+|+.++|||||+++|.|. +.+.
T Consensus 387 ~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~-e~P~ 465 (974)
T KOG4257|consen 387 RRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCV-EQPM 465 (974)
T ss_pred ehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeee-ccce
Confidence 3344556788999999999999972 333 38889886533 445789999999999999999999999997 4579
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|||||.++.|.|..||++
T Consensus 466 WivmEL~~~GELr~yLq~ 483 (974)
T KOG4257|consen 466 WIVMELAPLGELREYLQQ 483 (974)
T ss_pred eEEEecccchhHHHHHHh
Confidence 999999999999999974
|
|
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=112.65 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=75.9
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
|+..+.||+|+||.||+|.. .+++.||+|.+.... ......+.+|+.+++.++|++|+++++++.+++..++||||
T Consensus 2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~ 81 (285)
T cd05631 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI 81 (285)
T ss_pred ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence 67778999999999999996 578999999987543 22345678999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
|++|+|.+++.
T Consensus 82 ~~~g~L~~~~~ 92 (285)
T cd05631 82 MNGGDLKFHIY 92 (285)
T ss_pred cCCCcHHHHHH
Confidence 99999988774
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=110.41 Aligned_cols=91 Identities=20% Similarity=0.290 Sum_probs=78.6
Q ss_pred hccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.++|+..+.||+|+||.||+|... +...+|||.+.... ....++|.+|+.++++++||||+++++++...+..++
T Consensus 3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~i 82 (266)
T cd05033 3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMI 82 (266)
T ss_pred hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEE
Confidence 357889999999999999999963 23579999986543 3446689999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 83 v~e~~~~~~L~~~~~~ 98 (266)
T cd05033 83 ITEYMENGSLDKFLRE 98 (266)
T ss_pred EEEcCCCCCHHHHHHh
Confidence 9999999999999853
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=114.72 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=78.9
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|...+.||+|+||.||++.. .+++.||+|.++... ....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (330)
T cd05601 1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM 80 (330)
T ss_pred CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence 3688889999999999999996 468899999997543 234567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 e~~~~~~L~~~l~~ 94 (330)
T cd05601 81 EYQPGGDLLSLLNR 94 (330)
T ss_pred CCCCCCCHHHHHHH
Confidence 99999999999864
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=113.36 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=73.1
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNI 515 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~g 515 (524)
+.||+|+||.||++.. .+|+.||+|.+.... ......+.+|++++++++||||+++++++...+..|+||||+++|
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~ 80 (323)
T cd05595 1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG 80 (323)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence 3689999999999996 568999999997542 234556788999999999999999999999999999999999999
Q ss_pred CHHHHHHh
Q 040301 516 SITIIRRH 523 (524)
Q Consensus 516 sL~~~l~~ 523 (524)
+|.+++++
T Consensus 81 ~L~~~l~~ 88 (323)
T cd05595 81 ELFFHLSR 88 (323)
T ss_pred cHHHHHHH
Confidence 99988753
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.1e-11 Score=111.36 Aligned_cols=91 Identities=20% Similarity=0.293 Sum_probs=80.1
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..++|+..+.+|+|+||.||+|...+++.||+|.++.... ..+++.+|++++++++||||+++++++...+..++||||
T Consensus 4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 82 (261)
T cd05068 4 DRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM-DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTEL 82 (261)
T ss_pred chhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc-cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeec
Confidence 3456888899999999999999987777899999875432 356789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 83 ~~~~~L~~~~~~ 94 (261)
T cd05068 83 MKYGSLLEYLQG 94 (261)
T ss_pred ccCCcHHHHHhc
Confidence 999999999864
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-10 Score=110.63 Aligned_cols=89 Identities=22% Similarity=0.291 Sum_probs=78.1
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
++|+..+.+|+|+||.||.|...++..+|+|.+..... ...+|.+|+.++++++||||+++++++...+..++||||++
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 82 (256)
T cd05113 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMS 82 (256)
T ss_pred HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc-cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCC
Confidence 46788889999999999999986666799999875432 34678999999999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+|+|.+++++
T Consensus 83 ~~~l~~~i~~ 92 (256)
T cd05113 83 NGCLLNYLRE 92 (256)
T ss_pred CCcHHHHHHh
Confidence 9999999864
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=113.04 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=73.2
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNI 515 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~g 515 (524)
+.||+|+||.||++.. .+|+.||+|.+.... ......+.+|++++++++||||+++++++..++..|+||||+++|
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~ 80 (323)
T cd05571 1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG 80 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence 3689999999999996 578899999997543 233456789999999999999999999999999999999999999
Q ss_pred CHHHHHHh
Q 040301 516 SITIIRRH 523 (524)
Q Consensus 516 sL~~~l~~ 523 (524)
+|.+++.+
T Consensus 81 ~L~~~l~~ 88 (323)
T cd05571 81 ELFFHLSR 88 (323)
T ss_pred cHHHHHHH
Confidence 99988853
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=110.22 Aligned_cols=90 Identities=23% Similarity=0.314 Sum_probs=77.4
Q ss_pred ccccccCcccCCCCceEEEEEeC-C---CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-D---WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~---~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
++|+..+.+|+|+||.||+|... + +..+|+|.+.... ....+.|.+|+.++++++||||+++++++..++..++|
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 83 (267)
T cd05066 4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV 83 (267)
T ss_pred HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence 56888899999999999999852 2 3369999986543 33456899999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 84 ~e~~~~~~L~~~~~~ 98 (267)
T cd05066 84 TEYMENGSLDAFLRK 98 (267)
T ss_pred EEcCCCCCHHHHHHh
Confidence 999999999999864
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-11 Score=117.44 Aligned_cols=94 Identities=17% Similarity=0.276 Sum_probs=81.4
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~ 505 (524)
....+|...+.+|+|+|++|++|+. .+++.||||++.+.. ....+-..+|-.+|.++ .||.|++|+..|+++..+
T Consensus 70 k~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sL 149 (604)
T KOG0592|consen 70 KTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESL 149 (604)
T ss_pred CChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccce
Confidence 3456899999999999999999995 578999999997654 12234467889999999 899999999999999999
Q ss_pred eEEEcccCCCCHHHHHHhC
Q 040301 506 ALMWGRLLNISITIIRRHL 524 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~~ 524 (524)
|.|+||+++|+|.++|++.
T Consensus 150 YFvLe~A~nGdll~~i~K~ 168 (604)
T KOG0592|consen 150 YFVLEYAPNGDLLDLIKKY 168 (604)
T ss_pred EEEEEecCCCcHHHHHHHh
Confidence 9999999999999999874
|
|
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=111.74 Aligned_cols=83 Identities=16% Similarity=0.232 Sum_probs=70.8
Q ss_pred cccCCCCceEEEEEeCC-------------------------CCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccce
Q 040301 441 LLGTGSFGSVYKGTISD-------------------------WTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~~~-------------------------~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l 495 (524)
+||+|+||.||+|.... ...||+|.+.........+|.+|+.+++.++||||+++
T Consensus 2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~ 81 (274)
T cd05076 2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV 81 (274)
T ss_pred CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence 68999999999997411 13488998876555556788999999999999999999
Q ss_pred eEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 496 LSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 496 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++|..+...++||||+++|+|.+++++
T Consensus 82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~ 109 (274)
T cd05076 82 HGVCVRGSENIMVEEFVEHGPLDVCLRK 109 (274)
T ss_pred EEEEEeCCceEEEEecCCCCcHHHHHHh
Confidence 9999999999999999999999998853
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=111.58 Aligned_cols=93 Identities=25% Similarity=0.311 Sum_probs=79.7
Q ss_pred hhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
.++++|+..+.+|+|+||.||+|... .+..+|+|.+.... .....+|.+|+.+++.++||||+++++++..+.
T Consensus 3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~ 82 (277)
T cd05062 3 VAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ 82 (277)
T ss_pred ccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence 45678999999999999999998742 24679999986433 334567899999999999999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 83 ~~~lv~e~~~~~~L~~~~~~ 102 (277)
T cd05062 83 PTLVIMELMTRGDLKSYLRS 102 (277)
T ss_pred CeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=109.35 Aligned_cols=89 Identities=24% Similarity=0.477 Sum_probs=78.0
Q ss_pred cccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc------hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL------ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~------~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
+|...+.||+|+||.||+|...+++.+|+|.+.... ....+.+.+|++++++++|+||+++++++.+.+..++|
T Consensus 1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv 80 (265)
T cd06631 1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF 80 (265)
T ss_pred CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence 467788999999999999998788999999986432 22345688999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 81 ~e~~~~~~L~~~l~~ 95 (265)
T cd06631 81 MEFVPGGSISSILNR 95 (265)
T ss_pred EecCCCCcHHHHHHh
Confidence 999999999999864
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-11 Score=116.17 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=78.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc-ceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF-KALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~-~~lv 508 (524)
.++|...+++|+|+||.++.++. .++..+++|.+.-.. ....+...+|+.+++++.|||||.+++.+..++. .+||
T Consensus 3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Iv 82 (426)
T KOG0589|consen 3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIV 82 (426)
T ss_pred cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEE
Confidence 46788999999999999998885 356789999996443 3345577899999999999999999999998888 9999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|+||+||++.+.|++
T Consensus 83 m~Y~eGg~l~~~i~~ 97 (426)
T KOG0589|consen 83 MEYCEGGDLAQLIKE 97 (426)
T ss_pred EeecCCCCHHHHHHH
Confidence 999999999999864
|
|
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-10 Score=112.53 Aligned_cols=82 Identities=18% Similarity=0.133 Sum_probs=71.8
Q ss_pred ccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 442 LGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 442 ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
||+|+||.||+|.. .+++.||+|.+.... ......+.+|+.++++++||||+++++++..++..++||||+++|+|
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L 80 (312)
T cd05585 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL 80 (312)
T ss_pred CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence 69999999999996 467889999997532 23456788999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 040301 518 TIIRRH 523 (524)
Q Consensus 518 ~~~l~~ 523 (524)
.+++++
T Consensus 81 ~~~l~~ 86 (312)
T cd05585 81 FHHLQR 86 (312)
T ss_pred HHHHHh
Confidence 998853
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=111.52 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=79.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.||+|+||+||++.. .+++.+|+|.+.... ....+.+.+|+++++.++||||+++++++...+..++||||
T Consensus 5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (284)
T cd06620 5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF 84 (284)
T ss_pred HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence 5688889999999999999996 468889999886543 34467889999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 85 ~~~~~L~~~~~~ 96 (284)
T cd06620 85 MDCGSLDRIYKK 96 (284)
T ss_pred CCCCCHHHHHHh
Confidence 999999998764
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-11 Score=120.29 Aligned_cols=86 Identities=24% Similarity=0.271 Sum_probs=74.6
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
-|+..+.||.|+||.||-|+. .+...||||++.... ...++++..||++|.+++|||+|.+.|||..+...|+|||
T Consensus 27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME 106 (948)
T KOG0577|consen 27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME 106 (948)
T ss_pred HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence 366778899999999999995 567889999997544 3457889999999999999999999999999999999999
Q ss_pred ccCCCCHHHHH
Q 040301 511 RLLNISITIIR 521 (524)
Q Consensus 511 ~~~~gsL~~~l 521 (524)
||-| |-.|.+
T Consensus 107 YClG-SAsDll 116 (948)
T KOG0577|consen 107 YCLG-SASDLL 116 (948)
T ss_pred HHhc-cHHHHH
Confidence 9984 766665
|
|
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=111.73 Aligned_cols=91 Identities=26% Similarity=0.408 Sum_probs=79.0
Q ss_pred hccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccchH-HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQLER-AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~~~-~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.++|...+.+|+|+||.||+|... +++.+|||.+...... ..+.|.+|++++++++||||+++++++......
T Consensus 4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~ 83 (280)
T cd05049 4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPP 83 (280)
T ss_pred hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCe
Confidence 356888899999999999999853 2467999999754433 467899999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.++++.
T Consensus 84 ~lv~e~~~~~~L~~~i~~ 101 (280)
T cd05049 84 IMVFEYMEHGDLNKFLRS 101 (280)
T ss_pred EEEEecCCCCCHHHHHHh
Confidence 999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=113.64 Aligned_cols=90 Identities=18% Similarity=0.208 Sum_probs=77.9
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||++... +++.+|+|.+.... ....+.+.+|+.++..++|++|+++++++.+++..|+||
T Consensus 1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (332)
T cd05623 1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM 80 (332)
T ss_pred CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence 36888899999999999999974 57789999996532 223455889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 ey~~~g~L~~~l~~ 94 (332)
T cd05623 81 DYYVGGDLLTLLSK 94 (332)
T ss_pred eccCCCcHHHHHHH
Confidence 99999999999964
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=123.60 Aligned_cols=89 Identities=19% Similarity=0.291 Sum_probs=79.0
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||+|.. .+++.||+|++.... ....++|.+|++++++++||||+++++++.+++..++||
T Consensus 2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM 81 (932)
T PRK13184 2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM 81 (932)
T ss_pred CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence 5688899999999999999996 468899999996532 234567999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||++||+|.++++
T Consensus 82 EY~eGGSL~~lL~ 94 (932)
T PRK13184 82 PYIEGYTLKSLLK 94 (932)
T ss_pred EcCCCCCHHHHHH
Confidence 9999999999885
|
|
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=110.06 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=77.3
Q ss_pred ccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--Ccce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~ 506 (524)
.+|+..+.+|+|+||.||++.+ .++..||+|.+........+.|.+|++++++++||||+++++++... ...+
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 83 (284)
T cd05081 4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR 83 (284)
T ss_pred ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence 4678889999999999999984 25778999999766655677899999999999999999999987543 4689
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 84 lv~e~~~~~~L~~~l~~ 100 (284)
T cd05081 84 LVMEYLPYGSLRDYLQK 100 (284)
T ss_pred EEEEecCCCCHHHHHHh
Confidence 99999999999999853
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-10 Score=116.19 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=79.3
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|...+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++..++||||+++++++.+++..++||
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (350)
T cd05573 1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM 80 (350)
T ss_pred CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence 36888899999999999999974 68899999997543 234567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++.+
T Consensus 81 e~~~~~~L~~~l~~ 94 (350)
T cd05573 81 EYMPGGDLMNLLIR 94 (350)
T ss_pred cCCCCCCHHHHHHH
Confidence 99999999999864
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-11 Score=120.22 Aligned_cols=89 Identities=24% Similarity=0.280 Sum_probs=76.5
Q ss_pred ccccccCcccCCCCceEEEEEe--CCCC--EEEEEEeeccchH-HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI--SDWT--NVAIKIFNLQLER-AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~--~~~~--~vavK~~~~~~~~-~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
+.....+.||+|.||.|++|.| ..|+ .||||.+...... ...+|.+|+.+|.+++|||++++||...+ ....||
T Consensus 110 e~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV 188 (1039)
T KOG0199|consen 110 EQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMV 188 (1039)
T ss_pred HHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHH
Confidence 3445567999999999999997 3454 4899999765532 56789999999999999999999999987 789999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||.++.|||.+-|++
T Consensus 189 ~ELaplGSLldrLrk 203 (1039)
T KOG0199|consen 189 FELAPLGSLLDRLRK 203 (1039)
T ss_pred hhhcccchHHHHHhh
Confidence 999999999999976
|
|
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=115.36 Aligned_cols=87 Identities=23% Similarity=0.237 Sum_probs=75.5
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.||+|+||.||+|+. .+++.||||.+.... ....+.+.+|+++++.++|+||+++++++...+..++||||
T Consensus 74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 153 (353)
T PLN00034 74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEF 153 (353)
T ss_pred HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEec
Confidence 4566778999999999999996 468899999996543 33456789999999999999999999999999999999999
Q ss_pred cCCCCHHHH
Q 040301 512 LLNISITII 520 (524)
Q Consensus 512 ~~~gsL~~~ 520 (524)
+++|+|.+.
T Consensus 154 ~~~~~L~~~ 162 (353)
T PLN00034 154 MDGGSLEGT 162 (353)
T ss_pred CCCCccccc
Confidence 999998653
|
|
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-10 Score=111.84 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=72.3
Q ss_pred CcccCCCCceEEEEEe----CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 440 NLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
+.||+|+||.||++.. .+|+.+|+|++.... ......+.+|++++++++||||+++++++.+++..|+||||++
T Consensus 2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~ 81 (318)
T cd05582 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR 81 (318)
T ss_pred ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence 5789999999999874 357899999997543 2234567889999999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+|+|.+++++
T Consensus 82 ~~~L~~~l~~ 91 (318)
T cd05582 82 GGDLFTRLSK 91 (318)
T ss_pred CCcHHHHHHH
Confidence 9999998853
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=109.18 Aligned_cols=91 Identities=21% Similarity=0.338 Sum_probs=80.2
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..++|.+.+.||+|+||.||+|...+++.+|||.+..... ..+++.+|+.++++++|+||+++++++......++||||
T Consensus 4 ~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 82 (261)
T cd05034 4 PRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM-SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEY 82 (261)
T ss_pred chhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc-CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEec
Confidence 4567889999999999999999987778899999875432 346789999999999999999999999998999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 83 ~~~~~L~~~i~~ 94 (261)
T cd05034 83 MSKGSLLDFLKS 94 (261)
T ss_pred cCCCCHHHHHhc
Confidence 999999999853
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=111.56 Aligned_cols=87 Identities=20% Similarity=0.275 Sum_probs=73.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--------------HHHHHHHHHHHHHhcCCCCCcccee
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--------------RAFRSFDSECEVLRNVCHRNLIKIL 496 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--------------~~~~~~~~Ei~~l~~l~H~niv~l~ 496 (524)
.-..|+....||+|.||.|-+|.. .+++.||||++.+... ...++..+||.+|+++.|||||+++
T Consensus 95 ~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~Li 174 (576)
T KOG0585|consen 95 QLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLI 174 (576)
T ss_pred ehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEE
Confidence 346799999999999999999995 5789999999965321 0135789999999999999999999
Q ss_pred EEEEcC--CcceEEEcccCCCCHH
Q 040301 497 SSCSNP--DFKALMWGRLLNISIT 518 (524)
Q Consensus 497 ~~~~~~--~~~~lv~e~~~~gsL~ 518 (524)
++..+. +.+|||+|||..|.+.
T Consensus 175 EvLDDP~s~~~YlVley~s~G~v~ 198 (576)
T KOG0585|consen 175 EVLDDPESDKLYLVLEYCSKGEVK 198 (576)
T ss_pred EeecCcccCceEEEEEeccCCccc
Confidence 998764 5799999999999753
|
|
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=109.64 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=80.0
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|+..+.||+|+||.||+|+. .+++.+|+|.++.........+.+|+.+++.++||||+++++++..++..++||||
T Consensus 8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~ 87 (267)
T cd06645 8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEF 87 (267)
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEec
Confidence 35788889999999999999996 46888999999765544556788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 88 ~~~~~L~~~~~~ 99 (267)
T cd06645 88 CGGGSLQDIYHV 99 (267)
T ss_pred cCCCcHHHHHHh
Confidence 999999998853
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-10 Score=110.73 Aligned_cols=92 Identities=21% Similarity=0.400 Sum_probs=79.6
Q ss_pred hhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
..++|+..+.+|+|+||.||++... ++..+|+|.+.... ....++|.+|+.++++++||||+++++++..++.
T Consensus 3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~ 82 (288)
T cd05050 3 PRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKP 82 (288)
T ss_pred ChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCc
Confidence 3467889999999999999999853 45779999987543 3345679999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++++
T Consensus 83 ~~lv~e~~~~~~L~~~l~~ 101 (288)
T cd05050 83 MCLLFEYMAYGDLNEFLRH 101 (288)
T ss_pred cEEEEecCCCCCHHHHHHH
Confidence 9999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-10 Score=108.80 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=71.1
Q ss_pred cccCCCCceEEEEEeC---CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCC
Q 040301 441 LLGTGSFGSVYKGTIS---DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNIS 516 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gs 516 (524)
.||+|+||.||+|... .+..+|+|.++... ......+.+|+.++++++||||+++++++.+....++||||+++|+
T Consensus 2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~ 81 (269)
T cd05087 2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD 81 (269)
T ss_pred cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence 6899999999999853 34568999886543 2344578899999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 040301 517 ITIIRRH 523 (524)
Q Consensus 517 L~~~l~~ 523 (524)
|.++++.
T Consensus 82 L~~~l~~ 88 (269)
T cd05087 82 LKGYLRS 88 (269)
T ss_pred HHHHHHH
Confidence 9999863
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-11 Score=115.50 Aligned_cols=89 Identities=25% Similarity=0.259 Sum_probs=79.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..|...+.||+|.||.||+|.. ..++.||+|.++-.. +....+..+|+.++..++++||.++||.+..+..+|++|||
T Consensus 13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey 92 (467)
T KOG0201|consen 13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEY 92 (467)
T ss_pred cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHH
Confidence 4577778999999999999996 568899999997544 44567888999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
|.||++.+.++
T Consensus 93 ~~gGsv~~lL~ 103 (467)
T KOG0201|consen 93 CGGGSVLDLLK 103 (467)
T ss_pred hcCcchhhhhc
Confidence 99999999875
|
|
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-10 Score=109.77 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=77.1
Q ss_pred ccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|+..+.||+|+||.||+|.. ..+..+|+|.+.... ......+.+|++++++++||||+++++++..++..|+
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 84 (283)
T cd05090 5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM 84 (283)
T ss_pred hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence 4577888999999999999984 245789999997533 3445778999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||+++|+|.+++.
T Consensus 85 v~e~~~~~~L~~~l~ 99 (283)
T cd05090 85 LFEYLNQGDLHEFLI 99 (283)
T ss_pred EEEcCCCCcHHHHHH
Confidence 999999999999984
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=106.48 Aligned_cols=84 Identities=30% Similarity=0.458 Sum_probs=74.0
Q ss_pred CcccCCCCceEEEEEeCCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCHH
Q 040301 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISIT 518 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~ 518 (524)
+.||+|+||.||+|...+++.+|+|.+.... ......|.+|++++++++||||+++++++...+..++||||+++|+|.
T Consensus 1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~ 80 (250)
T cd05085 1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL 80 (250)
T ss_pred CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence 3689999999999998788899999986544 334457899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 040301 519 IIRRH 523 (524)
Q Consensus 519 ~~l~~ 523 (524)
+++++
T Consensus 81 ~~~~~ 85 (250)
T cd05085 81 SFLRK 85 (250)
T ss_pred HHHHh
Confidence 98853
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-11 Score=121.45 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=75.1
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC------cce
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD------FKA 506 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------~~~ 506 (524)
.+...+.+|+|+||.||+|+. .+|+.||||.++... ....+...+|+++|++++|||||++.+.-.+.. ...
T Consensus 14 ~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~v 93 (732)
T KOG4250|consen 14 LWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPV 93 (732)
T ss_pred ceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccce
Confidence 455678999999999999994 689999999997643 445677889999999999999999998765533 468
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|||||.+|||+..|++
T Consensus 94 lvmEyC~gGsL~~~L~~ 110 (732)
T KOG4250|consen 94 LVMEYCSGGSLRKVLNS 110 (732)
T ss_pred EEEeecCCCcHHHHhcC
Confidence 99999999999998864
|
|
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-10 Score=107.98 Aligned_cols=89 Identities=22% Similarity=0.287 Sum_probs=78.1
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc---chHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ---LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.+|+|+||.||+|+. .+++.||||.+... .......+.+|++++++++||||+++++++...+..++|+
T Consensus 2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 81 (267)
T cd08228 2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL 81 (267)
T ss_pred cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence 4788899999999999999996 47889999988542 2344567899999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+++|+|.+++.
T Consensus 82 e~~~~~~L~~~~~ 94 (267)
T cd08228 82 ELADAGDLSQMIK 94 (267)
T ss_pred EecCCCcHHHHHH
Confidence 9999999998875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-10 Score=114.65 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=76.7
Q ss_pred hhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcC-
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNP- 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~- 502 (524)
..++|+..+.||+|+||.||+|.. .+++.||||.++... ....+.+.+|+.++.++ +||||++++++|...
T Consensus 5 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~ 84 (343)
T cd05103 5 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG 84 (343)
T ss_pred chhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC
Confidence 346799999999999999999973 346789999997543 33456788999999999 689999999988654
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...++|||||++|+|.++++.
T Consensus 85 ~~~~lv~ey~~~g~L~~~i~~ 105 (343)
T cd05103 85 GPLMVIVEFCKFGNLSNYLRS 105 (343)
T ss_pred CceEEEEeccCCCcHHHHHHh
Confidence 568999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-10 Score=107.23 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=73.6
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
+.||+|+||.||+|+. .+++.+|+|.+.... ......|.+|++++++++||||++++++|......++||||+++|+|
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (252)
T cd05084 1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF 80 (252)
T ss_pred CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence 3689999999999996 468889999886433 34456799999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 040301 518 TIIRRH 523 (524)
Q Consensus 518 ~~~l~~ 523 (524)
.+++++
T Consensus 81 ~~~~~~ 86 (252)
T cd05084 81 LTFLRT 86 (252)
T ss_pred HHHHHh
Confidence 999853
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=108.35 Aligned_cols=89 Identities=24% Similarity=0.304 Sum_probs=77.7
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
.+|+..+.+|+|+||.||++...++..+|+|.+..... ...+|.+|+++++.++||||+++++++...+..++||||++
T Consensus 4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~ 82 (256)
T cd05059 4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM-SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMA 82 (256)
T ss_pred HHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCC
Confidence 35788899999999999999987677899999865332 34568899999999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+|+|.+++++
T Consensus 83 ~~~L~~~l~~ 92 (256)
T cd05059 83 NGCLLNYLRE 92 (256)
T ss_pred CCCHHHHHHh
Confidence 9999999863
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=111.32 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=72.8
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNI 515 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~g 515 (524)
+.||+|+||.||++.. .+++.||+|.+.... ......+.+|+++++.++||||+++++++..++..++||||+++|
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g 80 (328)
T cd05593 1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG 80 (328)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence 3689999999999996 468899999997542 234567889999999999999999999999999999999999999
Q ss_pred CHHHHHH
Q 040301 516 SITIIRR 522 (524)
Q Consensus 516 sL~~~l~ 522 (524)
+|.+++.
T Consensus 81 ~L~~~l~ 87 (328)
T cd05593 81 ELFFHLS 87 (328)
T ss_pred CHHHHHH
Confidence 9998875
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-10 Score=109.92 Aligned_cols=91 Identities=24% Similarity=0.237 Sum_probs=80.9
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
...|+..+.||+|+||.||++.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++..++..++||||
T Consensus 18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~ 97 (297)
T cd06656 18 KKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 97 (297)
T ss_pred hhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecc
Confidence 36788999999999999999995 57889999999765544557788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 98 ~~~~~L~~~~~~ 109 (297)
T cd06656 98 LAGGSLTDVVTE 109 (297)
T ss_pred cCCCCHHHHHHh
Confidence 999999998753
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-10 Score=107.47 Aligned_cols=89 Identities=22% Similarity=0.240 Sum_probs=78.5
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.+|+|++|.||+|+. .+++.+|+|.+... ......++.+|++++++++||||+++++++..++..++||||
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 80 (256)
T cd08529 1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY 80 (256)
T ss_pred CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence 477788999999999999996 46889999998643 244567899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++++|.++++.
T Consensus 81 ~~~~~L~~~l~~ 92 (256)
T cd08529 81 AENGDLHKLLKM 92 (256)
T ss_pred CCCCcHHHHHHH
Confidence 999999999854
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=111.68 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=72.3
Q ss_pred CcccCCCCceEEEEEe----CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 440 NLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+.||+|+||.||++.. .+++.||+|.+.... ......+.+|+.+++.++||||+++++++..++..|+||||
T Consensus 2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~ 81 (323)
T cd05584 2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY 81 (323)
T ss_pred ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence 5799999999999985 357889999997532 22345678999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 82 ~~~~~L~~~~~~ 93 (323)
T cd05584 82 LSGGELFMHLER 93 (323)
T ss_pred CCCchHHHHHHH
Confidence 999999998853
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-10 Score=107.99 Aligned_cols=90 Identities=23% Similarity=0.275 Sum_probs=79.4
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.+|+|+||.||+|... +++.+|+|.++... ....+.+.+|++++++++|+||+++++++...+..++||
T Consensus 2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 81 (267)
T cd08224 2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL 81 (267)
T ss_pred CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence 57888999999999999999974 78999999886422 334668899999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 82 e~~~~~~L~~~l~~ 95 (267)
T cd08224 82 ELADAGDLSRMIKH 95 (267)
T ss_pred ecCCCCCHHHHHHH
Confidence 99999999998853
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=107.86 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=79.4
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.++|+..+.+|+|+||.||+|... ++.+|+|.+..... ..+++.+|+.++++++|+||+++++++...+..++||||+
T Consensus 5 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~ 82 (256)
T cd05039 5 SKELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYM 82 (256)
T ss_pred hhhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEec
Confidence 457888899999999999999974 78899999976543 5678999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 83 ~~~~L~~~~~~ 93 (256)
T cd05039 83 AKGSLVDYLRS 93 (256)
T ss_pred CCCcHHHHHHh
Confidence 99999999864
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-10 Score=108.31 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=77.8
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..++|+..+.||+|+||.||+|...+++.+|+|.+..... ...+|.+|+.++++++||||+++++++ ..+..++||||
T Consensus 4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~~v~e~ 81 (260)
T cd05067 4 PRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM-SPEAFLAEANLMKQLQHPRLVRLYAVV-TQEPIYIITEY 81 (260)
T ss_pred chHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC-cHHHHHHHHHHHHhcCCcCeeeEEEEE-ccCCcEEEEEc
Confidence 3467888999999999999999988888999999975442 346789999999999999999999987 45679999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 82 ~~~~~L~~~~~~ 93 (260)
T cd05067 82 MENGSLVDFLKT 93 (260)
T ss_pred CCCCCHHHHHHh
Confidence 999999998853
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-10 Score=118.03 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=76.9
Q ss_pred cccccCcccCCCCceEEEEEe-CC-CCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SD-WTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~-~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.|...+.+|+|+||.||+|.. .+ +..||+|.+..........+.+|+.+++.++|||||++++++..++..|+||||+
T Consensus 68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~ 147 (478)
T PTZ00267 68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG 147 (478)
T ss_pred eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence 488889999999999999985 33 5778899876555555567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
++|+|.++++
T Consensus 148 ~gg~L~~~l~ 157 (478)
T PTZ00267 148 SGGDLNKQIK 157 (478)
T ss_pred CCCCHHHHHH
Confidence 9999998875
|
|
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-10 Score=120.32 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=76.6
Q ss_pred ccccccCcccCCCCceEEEEEeCCC-CEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEE-Ec------CCc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDW-TNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSC-SN------PDF 504 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~-~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~-~~------~~~ 504 (524)
-.+++.+.|.+|||+.||.|+...+ ..||+|++-...+...+.+.+||++|+.+. |+|||.+++.. .. .-+
T Consensus 37 ~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~E 116 (738)
T KOG1989|consen 37 HRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWE 116 (738)
T ss_pred EEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeE
Confidence 4467778999999999999997554 899999997767778899999999999996 99999999932 22 136
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
++|+||||.||+|-|||.+
T Consensus 117 vllLmEyC~gg~Lvd~mn~ 135 (738)
T KOG1989|consen 117 VLLLMEYCKGGSLVDFMNT 135 (738)
T ss_pred EEeehhhccCCcHHHHHHH
Confidence 7899999999999999975
|
|
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-10 Score=110.94 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=72.2
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.. .+++.||+|.++... ....+.+.+|+.++..+ +||||+++++++.+.+..|+|||||++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~ 80 (329)
T cd05588 1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG 80 (329)
T ss_pred CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence 3689999999999996 468899999997643 23345688999999988 799999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 g~L~~~~~~ 89 (329)
T cd05588 81 GDLMFHMQR 89 (329)
T ss_pred CCHHHHHHH
Confidence 999988753
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-10 Score=106.32 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=77.3
Q ss_pred ccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-----hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 436 FNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-----ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|++++++++|+||+++++++..++..++|+
T Consensus 2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~ 81 (258)
T cd06632 2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL 81 (258)
T ss_pred ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence 667789999999999999975 78899999986432 234567899999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++++|.+++++
T Consensus 82 e~~~~~~L~~~~~~ 95 (258)
T cd06632 82 ELVPGGSLAKLLKK 95 (258)
T ss_pred EecCCCcHHHHHHh
Confidence 99999999999864
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.8e-12 Score=126.42 Aligned_cols=243 Identities=26% Similarity=0.269 Sum_probs=106.7
Q ss_pred cccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccc
Q 040301 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI 121 (524)
Q Consensus 42 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 121 (524)
.+..++.+.+..|.+..+. ..+..+++|+.|++.+|.|..+.. .+..+. +|+.|++++|.|+...+ +
T Consensus 70 ~l~~l~~l~l~~n~i~~~~---------~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~-~L~~L~ls~N~I~~i~~--l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL---------NHLSKLKSLEALDLYDNKIEKIEN-LLSSLV-NLQVLDLSFNKITKLEG--L 136 (414)
T ss_pred HhHhHHhhccchhhhhhhh---------cccccccceeeeeccccchhhccc-chhhhh-cchheeccccccccccc--h
Confidence 3445555556666665421 234555666666666666663322 123333 45555555555543222 3
Q ss_pred cCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040301 122 GNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIP-YDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 200 (524)
..++.|+.|++++|.++.+ ..+..++.|+.+++++|++...-+ . ...+. +++
T Consensus 137 ~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~------------------------~l~ 189 (414)
T KOG0531|consen 137 STLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELI------------------------SLE 189 (414)
T ss_pred hhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhcc------------------------chH
Confidence 3444455555555555422 223334455555555555442222 1 23444 444
Q ss_pred EEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCC--CCCEEEcCCCcCccccccccccCCCCEEEccCC
Q 040301 201 ELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLK--VLRVLDLSRNQLSGDISTIGALVDLETLSLASN 278 (524)
Q Consensus 201 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N 278 (524)
.+++.+|.+.. ...+..+..+..+++..|.+...-+ +..+. .|+.+++++|.+...+..+..+.++..|++.+|
T Consensus 190 ~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 190 ELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence 44444444431 1222223333333444444432111 11111 145555555555433233444445555555555
Q ss_pred cccCCCcccccCCCCCCEEeCCCCcCCCC---Ccc-cccCCCCCCeEEccCCcCcc
Q 040301 279 QFQGPIPESVGSLISLESLDLSGNNLSGK---IPK-SLETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 279 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~-~~~~l~~L~~l~l~~n~l~~ 330 (524)
++... ..+...+.+..+....|.+... ... .....+.+..+.+..|+...
T Consensus 266 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 266 RISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 55422 2233344444555555554311 111 13344555666666665544
|
|
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-10 Score=110.12 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=76.6
Q ss_pred hccccccCcccCCCCceEEEEEeCC---------------CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCcccee
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISD---------------WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKIL 496 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~---------------~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~ 496 (524)
.++|+..+.||+|+||.||++.... ...||+|.+.... ......|.+|++++++++||||++++
T Consensus 4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~ 83 (295)
T cd05097 4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLL 83 (295)
T ss_pred hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence 3578889999999999999987521 2348999987543 33456799999999999999999999
Q ss_pred EEEEcCCcceEEEcccCCCCHHHHHH
Q 040301 497 SSCSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 497 ~~~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
+++...+..++||||+++|+|.+++.
T Consensus 84 ~~~~~~~~~~lv~e~~~~~~L~~~l~ 109 (295)
T cd05097 84 GVCVSDDPLCMITEYMENGDLNQFLS 109 (295)
T ss_pred EEEcCCCccEEEEecCCCCcHHHHHH
Confidence 99999999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-10 Score=108.87 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=78.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||++.. .+++.+|+|.+.... ......+.+|++++++++||||+++++++..++..++||
T Consensus 1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 80 (290)
T cd05580 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM 80 (290)
T ss_pred CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence 3688889999999999999996 468899999996533 234567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 e~~~~~~L~~~~~~ 94 (290)
T cd05580 81 EYVPGGELFSHLRK 94 (290)
T ss_pred ecCCCCCHHHHHHH
Confidence 99999999999864
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-10 Score=108.82 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=81.1
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.+|+|+||.||+|+. .++..+|+|.+........+.+.+|+++++.++||||+++++++..+...++|||
T Consensus 10 ~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 89 (292)
T cd06644 10 PNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIE 89 (292)
T ss_pred cchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEe
Confidence 346788999999999999999997 4578899999977665567789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|..+++
T Consensus 90 ~~~~~~l~~~~~ 101 (292)
T cd06644 90 FCPGGAVDAIML 101 (292)
T ss_pred cCCCCcHHHHHH
Confidence 999999988774
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-10 Score=108.49 Aligned_cols=89 Identities=24% Similarity=0.366 Sum_probs=78.1
Q ss_pred ccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.+|...+.+|+|+||.||++.. .++..+|+|.+........+.+.+|++++++++||||+++++++...+..++
T Consensus 5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 84 (288)
T cd05093 5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 84 (288)
T ss_pred HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence 4688889999999999999984 2345689999876555566789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||+++|+|.++++
T Consensus 85 v~e~~~~~~L~~~i~ 99 (288)
T cd05093 85 VFEYMKHGDLNKFLR 99 (288)
T ss_pred EEEcCCCCCHHHHHH
Confidence 999999999999986
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=109.55 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=82.2
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEE-
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCS- 500 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~- 500 (524)
+.++.+..+.++|+..+.||+|+||.||++.. .+++.+|+|.+..... ...++.+|+.+++++ +||||+++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 86 (286)
T cd06638 8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD-IDEEIEAEYNILKALSDHPNVVKFYGMYYK 86 (286)
T ss_pred EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc-hHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence 45677778899999999999999999999996 4678899998865332 335678899999999 6999999999884
Q ss_pred ----cCCcceEEEcccCCCCHHHHHH
Q 040301 501 ----NPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 501 ----~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
.++..++||||+++|+|.++++
T Consensus 87 ~~~~~~~~~~lv~e~~~~~~L~~~l~ 112 (286)
T cd06638 87 KDVKNGDQLWLVLELCNGGSVTDLVK 112 (286)
T ss_pred cccCCCCeEEEEEeecCCCCHHHHHH
Confidence 3456899999999999998875
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-10 Score=106.77 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=70.5
Q ss_pred cccCCCCceEEEEEeCC---CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCC
Q 040301 441 LLGTGSFGSVYKGTISD---WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNIS 516 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gs 516 (524)
.||+|+||.||+|...+ ...+|+|.+.... ......|.+|+++++.++||||+++++++......++||||+++|+
T Consensus 2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~ 81 (269)
T cd05042 2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD 81 (269)
T ss_pred cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence 58999999999997533 3468888876443 3345678899999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 040301 517 ITIIRRH 523 (524)
Q Consensus 517 L~~~l~~ 523 (524)
|.+++++
T Consensus 82 L~~~l~~ 88 (269)
T cd05042 82 LKNYLRS 88 (269)
T ss_pred HHHHHHh
Confidence 9999864
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-10 Score=110.82 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=72.5
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHH---hcCCCCCccceeEEEEcCCcceEE
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVL---RNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l---~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
|+..+.||+|+||.||+|.. .+++.||||.++... ....+.+.+|++++ +.++||||+++++++...+..|+|
T Consensus 1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv 80 (324)
T cd05589 1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV 80 (324)
T ss_pred CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence 56678999999999999996 468899999997543 22345566776654 567899999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|..++++
T Consensus 81 ~E~~~~~~L~~~~~~ 95 (324)
T cd05589 81 MEYAAGGDLMMHIHT 95 (324)
T ss_pred EcCCCCCcHHHHhhc
Confidence 999999999887753
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-10 Score=108.42 Aligned_cols=90 Identities=20% Similarity=0.352 Sum_probs=77.8
Q ss_pred ccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccchH-HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQLER-AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~~~-~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
++|+....+|+|+||.||+|+.. +.+.+|+|.+...... ..+.+.+|++++++++||||+++++++...+..+
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 84 (275)
T cd05046 5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY 84 (275)
T ss_pred HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence 56888899999999999999952 2456899988654433 4578999999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 85 lv~e~~~~~~L~~~i~~ 101 (275)
T cd05046 85 MILEYTDLGDLKQFLRA 101 (275)
T ss_pred EEEEecCCCcHHHHHHh
Confidence 99999999999999864
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=109.18 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=76.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.||+|+||.||+|.. .+++.||+|.++... ......+.+|++++++++||||+++++++.+++..++||||
T Consensus 5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 84 (288)
T cd07871 5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY 84 (288)
T ss_pred ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence 4688899999999999999996 468899999996433 22345678999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
++ |+|.++++.
T Consensus 85 ~~-~~l~~~l~~ 95 (288)
T cd07871 85 LD-SDLKQYLDN 95 (288)
T ss_pred CC-cCHHHHHHh
Confidence 98 599988753
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-10 Score=109.89 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=79.0
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.||+|+||.||++... ++..+|+|.+.... ......+.+|+.++++++||||+++++++..++..++||||
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~ 80 (286)
T cd06622 1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY 80 (286)
T ss_pred ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence 36788899999999999999974 68899999986532 33456789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++++|.+++++
T Consensus 81 ~~~~~l~~~~~~ 92 (286)
T cd06622 81 MDAGSLDKLYAG 92 (286)
T ss_pred cCCCCHHHHHHh
Confidence 999999998864
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=107.55 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=78.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..+|+..+.||+|+||.||+|.. ..++.+|+|.+.... ....++.+|++++++++||||+++++++..++..++||||
T Consensus 5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 83 (263)
T cd05052 5 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 83 (263)
T ss_pred hHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEe
Confidence 34678889999999999999996 457889999987543 2456789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.++++.
T Consensus 84 ~~~~~L~~~~~~ 95 (263)
T cd05052 84 MTYGNLLDYLRE 95 (263)
T ss_pred CCCCcHHHHHHh
Confidence 999999999853
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-10 Score=108.54 Aligned_cols=90 Identities=23% Similarity=0.237 Sum_probs=80.1
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
..|+..+.+|+|+||.||+|.. .+++.+|+|.+........+.+.+|+.+++.++||||+++++++..+...++||||+
T Consensus 20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~ 99 (296)
T cd06654 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL 99 (296)
T ss_pred cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeeccc
Confidence 5688889999999999999995 568899999997655445677889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 100 ~~~~L~~~~~~ 110 (296)
T cd06654 100 AGGSLTDVVTE 110 (296)
T ss_pred CCCCHHHHHHh
Confidence 99999998853
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=107.99 Aligned_cols=90 Identities=24% Similarity=0.436 Sum_probs=77.4
Q ss_pred ccccccCcccCCCCceEEEEEeCC------CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISD------WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
.+|+..+.||+|+||.||+|.... ...+|+|.+.... ....++|.+|+.++++++||||+++++++...+..+
T Consensus 5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T cd05048 5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC 84 (283)
T ss_pred HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence 468888999999999999998532 2569999987543 334567999999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
++|||+++|+|.+++++
T Consensus 85 ~~~e~~~~~~L~~~l~~ 101 (283)
T cd05048 85 MLFEYLAHGDLHEFLVR 101 (283)
T ss_pred EEEecCCCCcHHHHHHh
Confidence 99999999999999863
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4e-10 Score=108.00 Aligned_cols=92 Identities=20% Similarity=0.289 Sum_probs=79.1
Q ss_pred hhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
..++|...+.||+|+||.||+|... .+..||+|.+.... ......|.+|+.++++++|+||+++++++.+.+.
T Consensus 4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~ 83 (277)
T cd05036 4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP 83 (277)
T ss_pred CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence 4567889999999999999999963 35678999886543 3345679999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++++
T Consensus 84 ~~lv~e~~~g~~L~~~i~~ 102 (277)
T cd05036 84 RFILLELMAGGDLKSFLRE 102 (277)
T ss_pred cEEEEecCCCCCHHHHHHH
Confidence 9999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-10 Score=109.73 Aligned_cols=89 Identities=22% Similarity=0.335 Sum_probs=76.2
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|... +++.||||.+.... ......+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 83 (303)
T cd07869 4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE 83 (303)
T ss_pred cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence 467999999999999999999974 68899999996433 2233467789999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|++ |+|.+++.
T Consensus 84 ~~~-~~l~~~~~ 94 (303)
T cd07869 84 YVH-TDLCQYMD 94 (303)
T ss_pred CCC-cCHHHHHH
Confidence 996 68888775
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-10 Score=107.59 Aligned_cols=90 Identities=22% Similarity=0.300 Sum_probs=77.5
Q ss_pred ccccccCcccCCCCceEEEEEeC-CC---CEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DW---TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.+|...+.+|+|+||.||+|... ++ ..||+|.+.... ....++|..|+.+++.++||||+++++++.+++..++|
T Consensus 4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv 83 (269)
T cd05065 4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII 83 (269)
T ss_pred HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence 35778899999999999999963 33 359999987543 44567899999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 84 ~e~~~~~~L~~~l~~ 98 (269)
T cd05065 84 TEFMENGALDSFLRQ 98 (269)
T ss_pred EecCCCCcHHHHHhh
Confidence 999999999999864
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-10 Score=109.73 Aligned_cols=84 Identities=21% Similarity=0.177 Sum_probs=72.7
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNI 515 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~g 515 (524)
+.||+|+||.||++.. .+++.||+|.+.... ......+.+|+++++.++||||+++++++...+..|+||||+++|
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~ 80 (325)
T cd05594 1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG 80 (325)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence 3689999999999996 578899999997542 234456788999999999999999999999999999999999999
Q ss_pred CHHHHHHh
Q 040301 516 SITIIRRH 523 (524)
Q Consensus 516 sL~~~l~~ 523 (524)
+|.+++.+
T Consensus 81 ~L~~~l~~ 88 (325)
T cd05594 81 ELFFHLSR 88 (325)
T ss_pred cHHHHHHh
Confidence 99988753
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-10 Score=105.49 Aligned_cols=89 Identities=19% Similarity=0.117 Sum_probs=78.2
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.|+..+.+|+|+||.||.+.. .+++.+++|.+.... ....+++.+|++++++++|+||+++++++.+.+..++||||
T Consensus 1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~ 80 (256)
T cd08221 1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY 80 (256)
T ss_pred CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence 477889999999999998885 568889999986543 34566788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 81 ~~~~~L~~~~~~ 92 (256)
T cd08221 81 ANGGTLYDKIVR 92 (256)
T ss_pred cCCCcHHHHHHh
Confidence 999999999864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-10 Score=107.31 Aligned_cols=88 Identities=26% Similarity=0.261 Sum_probs=77.0
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
-|+..+.||+|+||.||+|.. .++..+|+|.+.... ....+.+.+|+.++++++||||+++++++..++..++||||+
T Consensus 5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 84 (277)
T cd06641 5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL 84 (277)
T ss_pred hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence 467778999999999999986 467889999986433 334567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
++|+|.++++
T Consensus 85 ~~~~l~~~i~ 94 (277)
T cd06641 85 GGGSALDLLE 94 (277)
T ss_pred CCCcHHHHHh
Confidence 9999999875
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-10 Score=107.33 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=70.2
Q ss_pred ccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 442 LGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 442 ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
||+|+||+||++.. .+++.+|+|.+..... ...+.+..|+++++.++||||+++.+++..+...++|||||++|+|
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L 80 (280)
T cd05608 1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL 80 (280)
T ss_pred CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence 69999999999996 4688999999975432 2345678899999999999999999999999999999999999999
Q ss_pred HHHHH
Q 040301 518 TIIRR 522 (524)
Q Consensus 518 ~~~l~ 522 (524)
.+++.
T Consensus 81 ~~~~~ 85 (280)
T cd05608 81 RYHIY 85 (280)
T ss_pred HHHHH
Confidence 88774
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.7e-10 Score=106.82 Aligned_cols=89 Identities=20% Similarity=0.295 Sum_probs=77.5
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc------hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL------ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~------~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+|+..+.+|+|+||.||++.. .+++.+|+|.+.... ....+.+.+|++++++++|+||+++++++.+.+..++
T Consensus 1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~ 80 (268)
T cd06630 1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL 80 (268)
T ss_pred CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence 477788999999999999985 578899999986432 1235678999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 81 v~e~~~~~~L~~~l~~ 96 (268)
T cd06630 81 FVEWMAGGSVSHLLSK 96 (268)
T ss_pred EEeccCCCcHHHHHHH
Confidence 9999999999999864
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-10 Score=107.13 Aligned_cols=90 Identities=27% Similarity=0.274 Sum_probs=78.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..|+..+.+|+|+||.||+|.. .++..+|+|.+.... ....+.+.+|+.++++++||||+++++++.++...++||||
T Consensus 4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 83 (277)
T cd06640 4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY 83 (277)
T ss_pred HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence 3577788999999999999996 457889999987543 34567899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.++++.
T Consensus 84 ~~~~~L~~~i~~ 95 (277)
T cd06640 84 LGGGSALDLLRA 95 (277)
T ss_pred CCCCcHHHHHhc
Confidence 999999998863
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=109.78 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=74.9
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.+|+|+||.||+|+.. +++.+|+|++.... ....+.+.+|++++++++||||+++++++..++..++||||
T Consensus 2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (287)
T cd07848 2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEY 81 (287)
T ss_pred CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEec
Confidence 5888899999999999999974 67889999996532 23456788999999999999999999999999999999999
Q ss_pred cCCCCHHHHH
Q 040301 512 LLNISITIIR 521 (524)
Q Consensus 512 ~~~gsL~~~l 521 (524)
++++.+..+.
T Consensus 82 ~~~~~l~~~~ 91 (287)
T cd07848 82 VEKNMLELLE 91 (287)
T ss_pred CCCCHHHHHH
Confidence 9988766544
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.7e-10 Score=110.30 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=73.0
Q ss_pred ccCcccCC--CCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 438 ECNLLGTG--SFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 438 ~~~~ig~g--~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
...+||+| +|++||++.. .+|+.||+|+++... ....+.+.+|+++++.++||||++++++|..++..++||||+
T Consensus 2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 81 (327)
T cd08227 2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM 81 (327)
T ss_pred hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence 34689999 6789999986 578999999997543 233456778999999999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
++|+|.++++
T Consensus 82 ~~~~l~~~~~ 91 (327)
T cd08227 82 AYGSAKDLIC 91 (327)
T ss_pred CCCcHHHHHH
Confidence 9999999985
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=107.25 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=76.0
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
..+|...+.+|+|+||.||+|...+...||+|.+..... ..++|.+|++++++++||||+++++++. .+..++||||+
T Consensus 5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~ 82 (262)
T cd05071 5 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYM 82 (262)
T ss_pred hHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcC
Confidence 456889999999999999999976666799999975332 3457899999999999999999999874 45689999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 83 ~~~~L~~~~~~ 93 (262)
T cd05071 83 SKGSLLDFLKG 93 (262)
T ss_pred CCCcHHHHHhh
Confidence 99999999864
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.4e-10 Score=106.69 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=75.3
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
+|+..+.+|+|+||.||+|.. .+++.+|+|.+.... ....+++.+|++++++++||||+++++++..++..++||||+
T Consensus 2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 81 (279)
T cd06619 2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM 81 (279)
T ss_pred cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence 577888999999999999996 568889999986542 334567999999999999999999999999999999999999
Q ss_pred CCCCHHHH
Q 040301 513 LNISITII 520 (524)
Q Consensus 513 ~~gsL~~~ 520 (524)
++|+|..+
T Consensus 82 ~~~~l~~~ 89 (279)
T cd06619 82 DGGSLDVY 89 (279)
T ss_pred CCCChHHh
Confidence 99998754
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.5e-10 Score=105.12 Aligned_cols=90 Identities=17% Similarity=0.307 Sum_probs=78.4
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-----hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-----ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|+..+.+|+|++|.||.|.. .+++.+|+|.+.... ....+.+.+|++++++++||||+++++++..++..++
T Consensus 2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~ 81 (263)
T cd06625 2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI 81 (263)
T ss_pred CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence 4688899999999999999986 468899999986432 1234578899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|+||+++|+|.+++++
T Consensus 82 v~e~~~~~~l~~~~~~ 97 (263)
T cd06625 82 FMEYMPGGSVKDQLKA 97 (263)
T ss_pred EEEECCCCcHHHHHHH
Confidence 9999999999998853
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.5e-11 Score=115.03 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=72.4
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
+...+.+...+-+|+|+-|.||.|++. ++.||||+++.... -+|+.|++++||||+.+.|+|.....+||||
T Consensus 120 eiPFe~IsELeWlGSGaQGAVF~Grl~-netVAVKKV~elkE-------TdIKHLRkLkH~NII~FkGVCtqsPcyCIiM 191 (904)
T KOG4721|consen 120 EIPFEEISELEWLGSGAQGAVFLGRLH-NETVAVKKVRELKE-------TDIKHLRKLKHPNIITFKGVCTQSPCYCIIM 191 (904)
T ss_pred cCCHHHhhhhhhhccCcccceeeeecc-CceehhHHHhhhhh-------hhHHHHHhccCcceeeEeeeecCCceeEEee
Confidence 333344445567899999999999985 47899998865443 3688999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||..|-|.+.||.
T Consensus 192 EfCa~GqL~~VLka 205 (904)
T KOG4721|consen 192 EFCAQGQLYEVLKA 205 (904)
T ss_pred eccccccHHHHHhc
Confidence 99999999999874
|
|
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.3e-10 Score=108.65 Aligned_cols=90 Identities=27% Similarity=0.405 Sum_probs=76.1
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCC--EEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWT--NVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~--~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv 508 (524)
++|+..+.||+|+||.||+|... ++. .+|+|.+.... ....+.+.+|++++.++ +||||+++++++..++..|+|
T Consensus 7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv 86 (303)
T cd05088 7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 86 (303)
T ss_pred hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence 46788899999999999999963 454 36788776433 34456788999999999 899999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 87 ~e~~~~~~L~~~l~~ 101 (303)
T cd05088 87 IEYAPHGNLLDFLRK 101 (303)
T ss_pred EEeCCCCcHHHHHHh
Confidence 999999999999863
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-10 Score=108.64 Aligned_cols=91 Identities=25% Similarity=0.254 Sum_probs=80.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.+.|...+.+|+|+||.||++.. .++..+|+|.+........+.+.+|+.++++++||||+++++++..++..|+|+||
T Consensus 18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~ 97 (293)
T cd06647 18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEY 97 (293)
T ss_pred hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEec
Confidence 46788899999999999999985 46788999998755444557789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 98 ~~~~~L~~~~~~ 109 (293)
T cd06647 98 LAGGSLTDVVTE 109 (293)
T ss_pred CCCCcHHHHHhh
Confidence 999999998864
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.9e-10 Score=108.51 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=77.1
Q ss_pred ccccccCcccCCCCceEEEEEeC-----------------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-----------------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKI 495 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-----------------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l 495 (524)
++|+..+.||+|+||.||++... ++..+|+|.+.... ....++|.+|++++++++|+||+++
T Consensus 5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~ 84 (296)
T cd05095 5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL 84 (296)
T ss_pred hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence 46889999999999999998531 23468999997543 3446789999999999999999999
Q ss_pred eEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 496 LSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 496 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++++..++..++||||+++|+|.+++++
T Consensus 85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 112 (296)
T cd05095 85 LAVCITSDPLCMITEYMENGDLNQFLSR 112 (296)
T ss_pred EEEEecCCccEEEEEeCCCCcHHHHHHh
Confidence 9999999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.7e-10 Score=105.34 Aligned_cols=91 Identities=22% Similarity=0.309 Sum_probs=81.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|+..+.+|+|+||.||+|.. .+++.+|+|.+........+.+.+|++++++++||||+++++++...+..+++|||
T Consensus 2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~ 81 (262)
T cd06613 2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEY 81 (262)
T ss_pred ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeC
Confidence 35788889999999999999996 45788999999766555667899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++++|.+++++
T Consensus 82 ~~~~~l~~~~~~ 93 (262)
T cd06613 82 CGGGSLQDIYQV 93 (262)
T ss_pred CCCCcHHHHHHh
Confidence 999999998853
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.2e-10 Score=107.14 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=75.4
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
|+..+.||+|+||.||++.. .+++.+|||.+.... ......+.+|+.++++++|++|+++++++.+.+..++||||
T Consensus 2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~ 81 (285)
T cd05630 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL 81 (285)
T ss_pred ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence 66778899999999999996 468899999986543 22345678899999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+++|+|.++++
T Consensus 82 ~~g~~L~~~l~ 92 (285)
T cd05630 82 MNGGDLKFHIY 92 (285)
T ss_pred cCCCcHHHHHH
Confidence 99999999874
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-10 Score=106.46 Aligned_cols=90 Identities=20% Similarity=0.304 Sum_probs=78.1
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..++|...+.+|+|+||.||++...++..+|+|.+.... ...+.|.+|++++++++|+||+++++++.. ...++||||
T Consensus 4 ~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~ 81 (260)
T cd05073 4 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEF 81 (260)
T ss_pred cccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEe
Confidence 446788999999999999999997777789999886543 245678999999999999999999999887 778999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 82 ~~~~~L~~~~~~ 93 (260)
T cd05073 82 MAKGSLLDFLKS 93 (260)
T ss_pred CCCCcHHHHHHh
Confidence 999999999864
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-10 Score=107.11 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=75.3
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
|+..+.||+|+||.||+|.. .+++.+|+|.+.... ......+.+|+++++.++|+||+++.+++..++..++||||
T Consensus 2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~ 81 (285)
T cd05632 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI 81 (285)
T ss_pred ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence 56678899999999999996 568899999996543 22345678999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+++|+|.+++.
T Consensus 82 ~~~~~L~~~~~ 92 (285)
T cd05632 82 MNGGDLKFHIY 92 (285)
T ss_pred ccCccHHHHHH
Confidence 99999998874
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.3e-10 Score=105.74 Aligned_cols=88 Identities=22% Similarity=0.332 Sum_probs=77.6
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
.+|+..+.+|+|+||.||++...++..+|+|.+..... ...+|.+|++++++++||||+++++++......++||||++
T Consensus 4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~ 82 (256)
T cd05112 4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM-SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFME 82 (256)
T ss_pred hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC-CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCC
Confidence 46778889999999999999986678899998865432 34578999999999999999999999999999999999999
Q ss_pred CCCHHHHHH
Q 040301 514 NISITIIRR 522 (524)
Q Consensus 514 ~gsL~~~l~ 522 (524)
+|+|.++++
T Consensus 83 ~~~L~~~~~ 91 (256)
T cd05112 83 HGCLSDYLR 91 (256)
T ss_pred CCcHHHHHH
Confidence 999999885
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-10 Score=106.66 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=78.4
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|...+.||+|+||.||++.. .+++.+|||.+.... ....+++.+|+++++.++||||+++++++..++..++||
T Consensus 2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~ 81 (267)
T cd08229 2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 81 (267)
T ss_pred chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence 4678889999999999999995 578899999886532 234568899999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+++|+|.++++
T Consensus 82 e~~~~~~L~~~~~ 94 (267)
T cd08229 82 ELADAGDLSRMIK 94 (267)
T ss_pred EecCCCCHHHHHH
Confidence 9999999999886
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-10 Score=111.94 Aligned_cols=92 Identities=14% Similarity=0.083 Sum_probs=80.7
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++-|...+.||+|.|+.|-.|+. -+|..||||++++.. .-......+|++.|+-++|||||++|++..++..+|+|
T Consensus 16 IAGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLi 95 (864)
T KOG4717|consen 16 IAGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLI 95 (864)
T ss_pred eeeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEE
Confidence 345688889999999999999885 589999999998765 23355678899999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
+|.=.+|+|+|||-+
T Consensus 96 LELGD~GDl~DyImK 110 (864)
T KOG4717|consen 96 LELGDGGDLFDYIMK 110 (864)
T ss_pred EEecCCchHHHHHHh
Confidence 999999999999843
|
|
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-10 Score=107.42 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=78.5
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
+|+..+.||.|+||.||+|... +++.+|+|.+.... ....+.+.+|++++++++||||+++++++.+++..++|+|
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 80 (258)
T cd05578 1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD 80 (258)
T ss_pred CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence 4778889999999999999974 58899999997543 2346789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++++|.+++++
T Consensus 81 ~~~~~~L~~~l~~ 93 (258)
T cd05578 81 LLLGGDLRYHLSQ 93 (258)
T ss_pred CCCCCCHHHHHHh
Confidence 9999999998853
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-10 Score=105.94 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=76.6
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..++|+..+.+|+|+||.||+|...++..+|+|.+..... ..++|.+|+.++++++|+|++++++++. .+..++||||
T Consensus 4 ~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~ 81 (260)
T cd05070 4 PRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEY 81 (260)
T ss_pred chHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEe
Confidence 3457888999999999999999987778899999875432 3467899999999999999999999885 5668999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+++|+|.++++
T Consensus 82 ~~~~~L~~~~~ 92 (260)
T cd05070 82 MSKGSLLDFLK 92 (260)
T ss_pred cCCCcHHHHHH
Confidence 99999999885
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=9e-10 Score=104.11 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=77.5
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
+|+..+.+|+|+||.||++.. .++..+|+|.++... ....+.+.+|+.++++++||||+++++++..++..++||||+
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 80 (255)
T cd08219 1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC 80 (255)
T ss_pred CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence 477788999999999999996 468889999986432 344567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 81 ~~~~l~~~~~~ 91 (255)
T cd08219 81 DGGDLMQKIKL 91 (255)
T ss_pred CCCcHHHHHHh
Confidence 99999998753
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.9e-10 Score=120.26 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=80.8
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc--
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN-- 501 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-- 501 (524)
.+......+|.+.+.||+|+||.||+|.. .++..+|+|.+.... ......|.+|+.+++.++|||||+++++|..
T Consensus 6 ~~ge~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~ 85 (1021)
T PTZ00266 6 DDGESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKA 85 (1021)
T ss_pred cCCccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecC
Confidence 34445567899999999999999999996 457789999986432 3446778999999999999999999998865
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+.+||||||+++|+|.++|++
T Consensus 86 ~~~lyIVMEY~~gGSL~~lL~k 107 (1021)
T PTZ00266 86 NQKLYILMEFCDAGDLSRNIQK 107 (1021)
T ss_pred CCEEEEEEeCCCCCcHHHHHHH
Confidence 3568999999999999998864
|
|
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.4e-10 Score=106.52 Aligned_cols=89 Identities=28% Similarity=0.375 Sum_probs=75.5
Q ss_pred cccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+|+..+.||+|+||.||+|+.. ....+|+|.+.... ....+++.+|+.+++.++||||++++++|..++..++
T Consensus 1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 80 (290)
T cd05045 1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL 80 (290)
T ss_pred CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence 4677889999999999999852 22468888886543 3345678999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|+||+.+|+|.+++++
T Consensus 81 v~e~~~~~~L~~~l~~ 96 (290)
T cd05045 81 IVEYAKYGSLRSFLRE 96 (290)
T ss_pred EEEecCCCCHHHHHHh
Confidence 9999999999999863
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.5e-10 Score=105.51 Aligned_cols=91 Identities=21% Similarity=0.359 Sum_probs=78.0
Q ss_pred hccccccCcccCCCCceEEEEEeC-CC---CEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DW---TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..+|+..+.+|+|+||.||+|... ++ ..+|+|.+.... ....+++.+|++++++++||||+++.+++...+..++
T Consensus 4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 83 (268)
T cd05063 4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI 83 (268)
T ss_pred hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence 356888899999999999999963 33 368999986543 3446779999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 84 v~e~~~~~~L~~~~~~ 99 (268)
T cd05063 84 ITEYMENGALDKYLRD 99 (268)
T ss_pred EEEcCCCCCHHHHHHh
Confidence 9999999999999853
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-10 Score=106.12 Aligned_cols=89 Identities=21% Similarity=0.347 Sum_probs=75.8
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc----------hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL----------ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~----------~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
.|...+.+|+|+||.||+|.. .+++.+|+|.++... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~ 81 (272)
T cd06629 2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE 81 (272)
T ss_pred ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence 366778999999999999985 468899999885321 112346889999999999999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 82 ~~~lv~e~~~~~~L~~~l~~ 101 (272)
T cd06629 82 YLSIFLEYVPGGSIGSCLRT 101 (272)
T ss_pred ceEEEEecCCCCcHHHHHhh
Confidence 99999999999999998864
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.5e-10 Score=108.70 Aligned_cols=89 Identities=21% Similarity=0.150 Sum_probs=75.1
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCC-CccceeEEEEcCCcceEEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHR-NLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~-niv~l~~~~~~~~~~~lv~ 509 (524)
+|+..+.||+|+||.||+|... +++.||||.+.... ....+.+..|++++..+.|+ +|+++++++...+..|+||
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (324)
T cd05587 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM 80 (324)
T ss_pred CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence 4778899999999999999964 57889999997542 23456788899999999765 5888999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 E~~~~g~L~~~~~~ 94 (324)
T cd05587 81 EYVNGGDLMYHIQQ 94 (324)
T ss_pred cCCCCCcHHHHHHH
Confidence 99999999998853
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.05 E-value=9e-10 Score=107.16 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=78.1
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
+|+..+.+|+|+||.||++.. ..++.||+|.+.... ....+.+.+|+++++.++||||+++++++..++..++|||
T Consensus 2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e 81 (305)
T cd05609 2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVME 81 (305)
T ss_pred CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEe
Confidence 678889999999999999996 457889999987543 2335678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 82 ~~~g~~L~~~l~~ 94 (305)
T cd05609 82 YVEGGDCATLLKN 94 (305)
T ss_pred cCCCCcHHHHHHH
Confidence 9999999999864
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-10 Score=108.64 Aligned_cols=92 Identities=23% Similarity=0.332 Sum_probs=78.1
Q ss_pred hhccccccCcccCCCCceEEEEEeC--------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS--------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSN 501 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 501 (524)
..++|...+.||+|+||.||++... ++..+|+|.+.... .....++.+|+++++++ +||||++++++|..
T Consensus 16 ~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (307)
T cd05098 16 PRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 95 (307)
T ss_pred ehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEec
Confidence 3467899999999999999999742 23469999997543 33456788999999999 79999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+..|+||||+++|+|.+++++
T Consensus 96 ~~~~~lv~e~~~~~~L~~~i~~ 117 (307)
T cd05098 96 DGPLYVIVEYASKGNLREYLRA 117 (307)
T ss_pred CCceEEEEecCCCCcHHHHHHh
Confidence 9999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-10 Score=119.59 Aligned_cols=109 Identities=30% Similarity=0.416 Sum_probs=99.9
Q ss_pred CCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040301 126 GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205 (524)
Q Consensus 126 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 205 (524)
.++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++.+.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCccChhccCC-CCCCEEEcCCCcCc
Q 040301 206 SNKLTSSIPSSLWSL-EYILMINLSSNSLN 234 (524)
Q Consensus 206 ~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~ 234 (524)
+|.+.+.+|..+... .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999999999888764 46778899988643
|
|
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.4e-10 Score=105.96 Aligned_cols=90 Identities=21% Similarity=0.321 Sum_probs=78.3
Q ss_pred ccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.+|.....+|+|+||.||++.. .++..+|+|.+........+.|.+|++++++++|+||+++++++...+..++
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 84 (280)
T cd05092 5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLM 84 (280)
T ss_pred HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEE
Confidence 4577788999999999999973 2355789999876655566789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 85 v~e~~~~~~L~~~i~~ 100 (280)
T cd05092 85 VFEYMRHGDLNRFLRS 100 (280)
T ss_pred EEecCCCCCHHHHHHh
Confidence 9999999999999864
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.8e-10 Score=107.72 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=70.6
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhc-CCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRN-VCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~-l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.. .+++.||||.++... ....+.+..|..++.. .+||||+++++++.+.+..++||||+++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~ 80 (316)
T cd05619 1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG 80 (316)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence 3689999999999997 457889999997642 2234556778888876 4999999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 g~L~~~l~~ 89 (316)
T cd05619 81 GDLMFHIQS 89 (316)
T ss_pred CcHHHHHHH
Confidence 999999864
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.3e-10 Score=108.23 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=71.3
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.. .+++.+|+|.+.... ....+.+.+|+.++.++ +||||+++++++..++..++||||+++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~ 80 (329)
T cd05618 1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG 80 (329)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence 3689999999999996 467889999997542 23445677899888776 899999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 ~~L~~~~~~ 89 (329)
T cd05618 81 GDLMFHMQR 89 (329)
T ss_pred CCHHHHHHH
Confidence 999988753
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.1e-10 Score=107.71 Aligned_cols=93 Identities=18% Similarity=0.273 Sum_probs=78.7
Q ss_pred hhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcC
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNP 502 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~ 502 (524)
...++|...+.||+|+||.||++.. ..+..+|+|.++... ....+.+.+|+++++++ +||||+++++++...
T Consensus 32 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~ 111 (302)
T cd05055 32 FPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIG 111 (302)
T ss_pred ccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecC
Confidence 3445788899999999999999974 124579999987543 33456789999999999 799999999999999
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..++||||+++|+|.+++++
T Consensus 112 ~~~~lv~e~~~~~~L~~~i~~ 132 (302)
T cd05055 112 GPILVITEYCCYGDLLNFLRR 132 (302)
T ss_pred CceEEEEEcCCCCcHHHHHHh
Confidence 999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.7e-10 Score=105.66 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=69.5
Q ss_pred ccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 442 LGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 442 ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
||+|+||.||++.. .+|+.||+|.+.... ....+.+..|++++++++||||+++.+++.++...++||||+++|+|
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L 80 (277)
T cd05607 1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL 80 (277)
T ss_pred CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence 69999999999996 468999999996432 12344566799999999999999999999999999999999999999
Q ss_pred HHHHH
Q 040301 518 TIIRR 522 (524)
Q Consensus 518 ~~~l~ 522 (524)
.++++
T Consensus 81 ~~~~~ 85 (277)
T cd05607 81 KYHIY 85 (277)
T ss_pred HHHHH
Confidence 98874
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.6e-10 Score=108.41 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=71.4
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++... +||||+++++++...+..|+||||+++
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~ 80 (320)
T cd05590 1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG 80 (320)
T ss_pred CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence 3689999999999996 467899999997542 23345677888888876 799999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 g~L~~~i~~ 89 (320)
T cd05590 81 GDLMFHIQK 89 (320)
T ss_pred chHHHHHHH
Confidence 999998854
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.9e-10 Score=108.16 Aligned_cols=89 Identities=26% Similarity=0.349 Sum_probs=74.9
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCC----EEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWT----NVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.+|+..+.||+|+||.||+|++ .++. .||+|.++... ....+++.+|+.+++.++||||++++|+|... ..++
T Consensus 7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~ 85 (316)
T cd05108 7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL 85 (316)
T ss_pred hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Ccee
Confidence 4688999999999999999985 3333 38999986543 34567899999999999999999999999764 5789
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|+||+++|+|.+++++
T Consensus 86 v~e~~~~g~l~~~l~~ 101 (316)
T cd05108 86 ITQLMPFGCLLDYVRE 101 (316)
T ss_pred eeecCCCCCHHHHHHh
Confidence 9999999999999864
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.2e-10 Score=104.09 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=77.8
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.+|+|+||.+|.+.. .+++.+|+|.+.... ....+++.+|++++++++||||+++++++...+..++||||
T Consensus 1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~ 80 (256)
T cd08218 1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY 80 (256)
T ss_pred CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence 477889999999999999996 568899999996432 33456789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 81 ~~~~~l~~~~~~ 92 (256)
T cd08218 81 CEGGDLYKKINA 92 (256)
T ss_pred CCCCcHHHHHHh
Confidence 999999998853
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.8e-10 Score=107.73 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=71.2
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|+. .+++.||+|.+.... ....+.+..|.+++..+ +||||+++++++..++..|+||||+++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~ 80 (321)
T cd05591 1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG 80 (321)
T ss_pred CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence 3689999999999996 457899999997543 23345677899998866 899999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 ~~L~~~l~~ 89 (321)
T cd05591 81 GDLMFQIQR 89 (321)
T ss_pred CcHHHHHHH
Confidence 999988753
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.8e-10 Score=107.30 Aligned_cols=95 Identities=22% Similarity=0.342 Sum_probs=79.9
Q ss_pred hhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEE
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCS 500 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~ 500 (524)
+....++|+..+.||+|+||.||++... ....+|+|.+.... .+...++.+|++++.++ +||||+++++++.
T Consensus 7 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~ 86 (293)
T cd05053 7 WELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCT 86 (293)
T ss_pred cccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEc
Confidence 3445567888999999999999999853 23578999987533 33456788999999999 8999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.++..++||||+++|+|.+++++
T Consensus 87 ~~~~~~li~e~~~~~~L~~~l~~ 109 (293)
T cd05053 87 QEGPLYVVVEYAAHGNLRDFLRA 109 (293)
T ss_pred CCCCeEEEEEeCCCCcHHHHHHh
Confidence 99999999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.6e-10 Score=105.94 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=75.3
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--CcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~lv~e 510 (524)
+|+..+.+|.|++|.||++.. .+++.+|+|.+.... .....++.+|++++++++||||++++++|... ...++|||
T Consensus 2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e 81 (287)
T cd06621 2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAME 81 (287)
T ss_pred ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEE
Confidence 577788999999999999997 467889999997543 23456789999999999999999999998654 36899999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|.++++
T Consensus 82 ~~~~~~L~~~l~ 93 (287)
T cd06621 82 YCEGGSLDSIYK 93 (287)
T ss_pred ecCCCCHHHHHH
Confidence 999999998875
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-10 Score=108.27 Aligned_cols=85 Identities=25% Similarity=0.439 Sum_probs=69.4
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--C---cceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--D---FKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~---~~~l 507 (524)
-.|+..+++|.|+||.||+|.. .++..||||+.-+..... -+|..+|+.++|||||++..+|... . +..+
T Consensus 24 i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k----nrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnl 99 (364)
T KOG0658|consen 24 ISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK----NRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNL 99 (364)
T ss_pred EEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC----cHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHH
Confidence 3577788999999999999996 457889999986544211 2699999999999999999998653 2 4569
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||+. +|.+++|+
T Consensus 100 VleymP~-tL~~~~r~ 114 (364)
T KOG0658|consen 100 VLEYMPE-TLYRVIRH 114 (364)
T ss_pred HHHhchH-HHHHHHHH
Confidence 9999996 99999985
|
|
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-11 Score=107.00 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=76.6
Q ss_pred CcccCCCCceEEEEE-eCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 440 NLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
+.+|+|.|+.|-.+. ..+|..||||++++.....+....+|++++..+ .|+||++++++|.++..+|+|||-|.||.|
T Consensus 84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGpl 163 (463)
T KOG0607|consen 84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPL 163 (463)
T ss_pred HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchH
Confidence 579999999999888 578999999999877666678888999999999 599999999999999999999999999999
Q ss_pred HHHHHh
Q 040301 518 TIIRRH 523 (524)
Q Consensus 518 ~~~l~~ 523 (524)
...|++
T Consensus 164 LshI~~ 169 (463)
T KOG0607|consen 164 LSHIQK 169 (463)
T ss_pred HHHHHH
Confidence 999865
|
|
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=107.20 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=69.3
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHH-HHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECE-VLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~-~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|+. .+++.||+|.+.... ......+.+|+. +++.++||||+++++++.+.+..|+||||+++
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~ 80 (321)
T cd05603 1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG 80 (321)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence 3689999999999997 468899999997543 223345556654 57889999999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 ~~L~~~l~~ 89 (321)
T cd05603 81 GELFFHLQR 89 (321)
T ss_pred CCHHHHHHH
Confidence 999988753
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=107.34 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=71.5
Q ss_pred CcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|... +++.||+|.+.... ......+.+|++++..+ +||||+++++++...+..|+||||+++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~ 80 (318)
T cd05570 1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG 80 (318)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence 36899999999999974 57889999997543 23345677899998877 799999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 ~~L~~~~~~ 89 (318)
T cd05570 81 GDLMFHIQR 89 (318)
T ss_pred CCHHHHHHH
Confidence 999988753
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=103.52 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=78.2
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.+|+|+||.||++.. .+++.+|+|.+.... ....+.+.+|++++++++||||+++++.+..++..++||||
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~ 80 (256)
T cd08220 1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY 80 (256)
T ss_pred CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence 477888999999999999996 467889999996543 33467889999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 81 ~~~~~L~~~~~~ 92 (256)
T cd08220 81 APGGTLAEYIQK 92 (256)
T ss_pred CCCCCHHHHHHH
Confidence 999999999864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=105.31 Aligned_cols=90 Identities=26% Similarity=0.300 Sum_probs=77.1
Q ss_pred ccccccCcccCCCCceEEEEEeC-----CCCEEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-----DWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFK 505 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~ 505 (524)
++|+..+.+|+|+||.||++++. ++..+|||.+..... ...+.|.+|++++++++||||+++++++.. +...
T Consensus 4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~ 83 (284)
T cd05038 4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL 83 (284)
T ss_pred hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence 45777889999999999999853 367899999975543 256789999999999999999999999987 5678
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 84 ~lv~e~~~~~~l~~~l~~ 101 (284)
T cd05038 84 RLIMEYLPSGSLRDYLQR 101 (284)
T ss_pred EEEEecCCCCCHHHHHHh
Confidence 999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.2e-10 Score=105.76 Aligned_cols=91 Identities=24% Similarity=0.308 Sum_probs=78.3
Q ss_pred hccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.++|...+.+|+|+||.||+|... .+..+|+|.+.... ......+.+|+.+++.++||||+++++++......
T Consensus 5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~ 84 (277)
T cd05032 5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT 84 (277)
T ss_pred hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence 457888899999999999999863 23679999986543 34456788999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 85 ~~v~e~~~~~~L~~~l~~ 102 (277)
T cd05032 85 LVVMELMAKGDLKSYLRS 102 (277)
T ss_pred EEEEecCCCCCHHHHHHh
Confidence 999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-10 Score=107.71 Aligned_cols=88 Identities=26% Similarity=0.274 Sum_probs=76.6
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++..++..++||||+
T Consensus 5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 84 (277)
T cd06642 5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYL 84 (277)
T ss_pred HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEcc
Confidence 466778899999999999986 457789999987443 344567899999999999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
++|+|.++++
T Consensus 85 ~~~~L~~~~~ 94 (277)
T cd06642 85 GGGSALDLLK 94 (277)
T ss_pred CCCcHHHHhh
Confidence 9999998875
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.8e-10 Score=105.58 Aligned_cols=87 Identities=20% Similarity=0.281 Sum_probs=77.3
Q ss_pred ccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 436 FNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
|+..+.+|+|+||.||+|... ++..+|+|.+........+.+.+|+++++.++||||+++++++..++..++|+||+++
T Consensus 7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~ 86 (282)
T cd06643 7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG 86 (282)
T ss_pred HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC
Confidence 567788999999999999974 5778899998765555667899999999999999999999999999999999999999
Q ss_pred CCHHHHHH
Q 040301 515 ISITIIRR 522 (524)
Q Consensus 515 gsL~~~l~ 522 (524)
|+|.+++.
T Consensus 87 ~~l~~~~~ 94 (282)
T cd06643 87 GAVDAVML 94 (282)
T ss_pred CcHHHHHH
Confidence 99998874
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-11 Score=122.68 Aligned_cols=194 Identities=24% Similarity=0.291 Sum_probs=132.2
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.++..+++..|.+. .+-..+..+.+|+.|++..|+|..+. ..+..+++|++|++++|.|+...+ +..+
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~---------~~l~~~~~L~~L~ls~N~I~~i~~--l~~l 139 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIE---------NLLSSLVNLQVLDLSFNKITKLEG--LSTL 139 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcc---------cchhhhhcchheeccccccccccc--hhhc
Confidence 45566667777777 34445778899999999999998873 227778999999999999996644 4455
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCC-ccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS-PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
. .|+.|++.+|.+.. ...+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+... ..+..+..+..+
T Consensus 140 ~-~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 140 T-LLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLL 213 (414)
T ss_pred c-chhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHh
Confidence 5 69999999999974 3346668999999999999986544 2 57889999999999998732 233334444445
Q ss_pred EccCCcccccCCccccCCCC--CCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTS--LRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 234 (524)
++..|.+...-+ +..+.. |+.+++.+|++. ..+..+..+..+..+++.+|++.
T Consensus 214 ~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 214 SLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 666776653221 122222 566666666665 22233444455555555555543
|
|
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-09 Score=104.93 Aligned_cols=89 Identities=22% Similarity=0.208 Sum_probs=78.4
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
+|+..+.+|.|+||.||+|.. .+++.+|+|.+.... ......+.+|+++++.++|+||+++++++.++...++|+||+
T Consensus 2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~ 81 (274)
T cd06609 2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYC 81 (274)
T ss_pred hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEee
Confidence 578888999999999999996 467889999987543 334567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.++++.
T Consensus 82 ~~~~L~~~~~~ 92 (274)
T cd06609 82 GGGSCLDLLKP 92 (274)
T ss_pred CCCcHHHHHhh
Confidence 99999998864
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=105.66 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=78.1
Q ss_pred hccccccCcccCCCCceEEEEEeCC-----------------CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISD-----------------WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIK 494 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~-----------------~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~ 494 (524)
..+|+..+.||+|+||.||+|.... +..+|+|.+.... ....+.+.+|++++++++||||++
T Consensus 4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~ 83 (296)
T cd05051 4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR 83 (296)
T ss_pred hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence 4578899999999999999988532 2458999987543 345678999999999999999999
Q ss_pred eeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 495 ILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 495 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++++..++..++||||+++|+|.+++++
T Consensus 84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 112 (296)
T cd05051 84 LLGVCTVDPPLCMIMEYMENGDLNQFLQK 112 (296)
T ss_pred EEEEEecCCCcEEEEecCCCCCHHHHHHh
Confidence 99999999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=106.99 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=69.2
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHH-HHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECE-VLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~-~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||+||+|.. .+++.||+|.+.... ....+.+.+|.. +++.++||||+++++++...+..++||||+++
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 80 (323)
T cd05575 1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG 80 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence 3689999999999997 478999999997543 223345555655 46789999999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 g~L~~~l~~ 89 (323)
T cd05575 81 GELFFHLQR 89 (323)
T ss_pred CCHHHHHHh
Confidence 999988753
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=103.77 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=69.6
Q ss_pred cccCCCCceEEEEEeCCC---CEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCC
Q 040301 441 LLGTGSFGSVYKGTISDW---TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNIS 516 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~~~~---~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gs 516 (524)
.||+|+||.||+|...++ ..+++|.+.... ....+.|.+|+.+++.++||||++++++|......++||||+++|+
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~ 81 (268)
T cd05086 2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD 81 (268)
T ss_pred cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence 589999999999985332 346677665433 3456789999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 040301 517 ITIIRRH 523 (524)
Q Consensus 517 L~~~l~~ 523 (524)
|.+++++
T Consensus 82 L~~~l~~ 88 (268)
T cd05086 82 LKSYLSQ 88 (268)
T ss_pred HHHHHHh
Confidence 9999864
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=103.83 Aligned_cols=90 Identities=19% Similarity=0.335 Sum_probs=75.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-----hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--Ccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-----ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFK 505 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~ 505 (524)
.+|+..+.+|+|+||.||.|.. .++..||+|.+.... ....+.+.+|+.++++++||||+++++++.+. ..+
T Consensus 2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (265)
T cd06652 2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL 81 (265)
T ss_pred CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence 4688889999999999999996 468899999885321 23356788999999999999999999998764 467
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 82 ~~v~e~~~~~~L~~~l~~ 99 (265)
T cd06652 82 SIFMEHMPGGSIKDQLKS 99 (265)
T ss_pred EEEEEecCCCcHHHHHHH
Confidence 899999999999999853
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.8e-10 Score=106.11 Aligned_cols=89 Identities=24% Similarity=0.360 Sum_probs=77.7
Q ss_pred ccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|...+.+|+|+||.||+|.. .++..+|+|.+........+.+.+|++++++++||||+++++++...+..++
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 84 (291)
T cd05094 5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM 84 (291)
T ss_pred HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence 4677888999999999999984 2345689999876655556789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||+++|+|.++++
T Consensus 85 v~e~~~~~~L~~~i~ 99 (291)
T cd05094 85 VFEYMKHGDLNKFLR 99 (291)
T ss_pred EEecCCCCcHHHHHH
Confidence 999999999999985
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=106.90 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=69.4
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhc-CCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRN-VCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~-l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.. .+++.||+|.++... ....+.+..|.+++.. .+||||+++++++..++..++||||+++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g 80 (316)
T cd05592 1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG 80 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence 3689999999999996 457889999997543 2234456677777765 4899999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 g~L~~~~~~ 89 (316)
T cd05592 81 GDLMFHIQS 89 (316)
T ss_pred CcHHHHHHH
Confidence 999998853
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.3e-10 Score=106.55 Aligned_cols=90 Identities=22% Similarity=0.244 Sum_probs=79.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
..|+..+.+|.|+||.||+|.. .+++.||+|.+........+.+.+|+++++.++||||+++++++..++..++|+||+
T Consensus 19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 98 (296)
T cd06655 19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL 98 (296)
T ss_pred ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence 4588889999999999999985 578899999997654445677889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 99 ~~~~L~~~~~~ 109 (296)
T cd06655 99 AGGSLTDVVTE 109 (296)
T ss_pred CCCcHHHHHHh
Confidence 99999998753
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-10 Score=113.26 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=79.5
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
+.|...+.+|.|+-|.|..|+. .+|+..|||++.+.. ........+||.+|+-+.||||+++|+++.+..++|+|.
T Consensus 12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl 91 (786)
T KOG0588|consen 12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL 91 (786)
T ss_pred cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence 5578889999999999999995 689999999997653 223455779999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|.|+++|.+
T Consensus 92 Eyv~gGELFdylv~ 105 (786)
T KOG0588|consen 92 EYVPGGELFDYLVR 105 (786)
T ss_pred EecCCchhHHHHHh
Confidence 99999999999854
|
|
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=103.29 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=78.5
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
++|+..+.+|+|+||.||+|... +++.+|+|.+..... .+++.+|++++++++||||+++++++..++..|+++||+
T Consensus 3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~ 80 (256)
T cd06612 3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYC 80 (256)
T ss_pred ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecC
Confidence 57889999999999999999975 478899999875432 678999999999999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
++++|.++++
T Consensus 81 ~~~~L~~~l~ 90 (256)
T cd06612 81 GAGSVSDIMK 90 (256)
T ss_pred CCCcHHHHHH
Confidence 9999999985
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=105.47 Aligned_cols=92 Identities=22% Similarity=0.221 Sum_probs=82.1
Q ss_pred hhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
..++.|+..+.+|+|+||.||+|... ++..+|+|.+..... ..+.+.+|++.+++++|+||+++++++..++..++|+
T Consensus 16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~ 94 (286)
T cd06614 16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVM 94 (286)
T ss_pred CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEE
Confidence 46677888999999999999999975 678899999976544 5567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++++|.+++++
T Consensus 95 e~~~~~~L~~~l~~ 108 (286)
T cd06614 95 EYMDGGSLTDIITQ 108 (286)
T ss_pred eccCCCcHHHHHHH
Confidence 99999999999864
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=107.91 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=75.8
Q ss_pred cccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~ 505 (524)
+|+..+.||+|+||.||++.. .+++.||+|.+.... ....+.+.+|+.++..+ +||+|+++++++..++..
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~ 80 (332)
T cd05614 1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL 80 (332)
T ss_pred CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence 477889999999999999885 357889999997532 22345678999999999 599999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 81 ~lv~e~~~~g~L~~~l~~ 98 (332)
T cd05614 81 HLILDYVSGGEMFTHLYQ 98 (332)
T ss_pred EEEEeCCCCCcHHHHHHH
Confidence 999999999999998853
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=105.10 Aligned_cols=90 Identities=23% Similarity=0.280 Sum_probs=76.0
Q ss_pred ccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--Ccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFK 505 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~ 505 (524)
.-|+..+.||+|+||.||.+.+ .++..||+|.+.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (284)
T cd05079 4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 83 (284)
T ss_pred hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCce
Confidence 3467888999999999999984 346789999987543 33456799999999999999999999999875 568
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 84 ~lv~e~~~g~~L~~~l~~ 101 (284)
T cd05079 84 KLIMEFLPSGSLKEYLPR 101 (284)
T ss_pred EEEEEccCCCCHHHHHHh
Confidence 999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=103.44 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=79.8
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
+|+..+.||+|++|.||+|+.. +++.+|+|++..... ...+.+.+|++.+.+++|+||+++++++..++..++||||+
T Consensus 2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~ 81 (264)
T cd06623 2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM 81 (264)
T ss_pred cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence 6788899999999999999974 588999999976543 45678999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++++|.+++.+
T Consensus 82 ~~~~L~~~l~~ 92 (264)
T cd06623 82 DGGSLADLLKK 92 (264)
T ss_pred CCCcHHHHHHH
Confidence 99999999864
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=103.29 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=79.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.+|.|+||.||+|.. .++..+|+|.+.... ....+.+.+|++.++.++|+||+++++.+..++..++||||
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~ 80 (267)
T cd06610 1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY 80 (267)
T ss_pred CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence 3688899999999999999996 467889999986433 33567899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++++|.+++++
T Consensus 81 ~~~~~l~~~~~~ 92 (267)
T cd06610 81 LSGGSLLDIMKS 92 (267)
T ss_pred cCCCcHHHHHHH
Confidence 999999999864
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.6e-10 Score=104.26 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=75.6
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.++|.....||+|+||.||+|....+..+|+|.+..... ..+.+.+|+.++++++|||++++++++. .+..++||||+
T Consensus 5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~ 82 (260)
T cd05069 5 RESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTM-MPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFM 82 (260)
T ss_pred hHHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCc-cHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcC
Confidence 356888899999999999999987667799998865432 3467889999999999999999999875 56789999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 83 ~~~~L~~~~~~ 93 (260)
T cd05069 83 GKGSLLDFLKE 93 (260)
T ss_pred CCCCHHHHHhh
Confidence 99999999864
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.2e-10 Score=107.03 Aligned_cols=93 Identities=22% Similarity=0.333 Sum_probs=78.6
Q ss_pred hhhccccccCcccCCCCceEEEEEe--------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI--------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCS 500 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~ 500 (524)
...++|...+.||+|+||.||+|+. .++..+|+|.+.... ....+.+.+|+.+++.+ +||||+++++++.
T Consensus 12 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~ 91 (304)
T cd05101 12 FSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 91 (304)
T ss_pred ccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEe
Confidence 4456788889999999999999973 123479999986533 34457789999999999 8999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.....++||||+++|+|.+++++
T Consensus 92 ~~~~~~lv~e~~~~~~L~~~l~~ 114 (304)
T cd05101 92 QDGPLYVIVEYASKGNLREYLRA 114 (304)
T ss_pred cCCceEEEEecCCCCcHHHHHHh
Confidence 99999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-10 Score=96.66 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=73.1
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.|...++||+|.||+|++|+- .+++.||+|+++... ++......+||-++++++|.|||++++....+..+-+|+||
T Consensus 3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~ 82 (292)
T KOG0662|consen 3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF 82 (292)
T ss_pred chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence 567778999999999999994 567889999986433 44456778999999999999999999999999999999999
Q ss_pred cCCCCHHHHH
Q 040301 512 LLNISITIIR 521 (524)
Q Consensus 512 ~~~gsL~~~l 521 (524)
|.. +|..|.
T Consensus 83 cdq-dlkkyf 91 (292)
T KOG0662|consen 83 CDQ-DLKKYF 91 (292)
T ss_pred hhH-HHHHHH
Confidence 985 666654
|
|
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=105.95 Aligned_cols=99 Identities=21% Similarity=0.274 Sum_probs=83.4
Q ss_pred ccchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEE
Q 040301 423 RTSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCS 500 (524)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~ 500 (524)
.+.+.++..++++|+..+.+|+|+||.||++.. .+++.+|+|.+..... ....+.+|+.+++++ +|||++++++++.
T Consensus 11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~~h~ni~~~~~~~~ 89 (291)
T cd06639 11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD-VDEEIEAEYNILQSLPNHPNVVKFYGMFY 89 (291)
T ss_pred hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccccc-HHHHHHHHHHHHHHhcCCCCeEEEEEEEE
Confidence 356677778899999999999999999999996 5688999999865432 345677899999998 8999999999987
Q ss_pred cC-----CcceEEEcccCCCCHHHHHH
Q 040301 501 NP-----DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 501 ~~-----~~~~lv~e~~~~gsL~~~l~ 522 (524)
.. +..++||||+++|+|.++++
T Consensus 90 ~~~~~~~~~~~lv~ey~~~~sL~~~~~ 116 (291)
T cd06639 90 KADKLVGGQLWLVLELCNGGSVTELVK 116 (291)
T ss_pred eccccCCCeeEEEEEECCCCcHHHHHH
Confidence 54 35899999999999999875
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=104.30 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=79.1
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
+|+..+.||+|+||.||++... +++.+|+|.+.... ....+++.+|++++++++||||+++++++..+...++|+||+
T Consensus 2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~ 81 (265)
T cd06605 2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM 81 (265)
T ss_pred cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence 5778889999999999999974 68899999997654 345677899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++++|.+++++
T Consensus 82 ~~~~L~~~~~~ 92 (265)
T cd06605 82 DGGSLDKILKE 92 (265)
T ss_pred CCCcHHHHHHH
Confidence 99999999864
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=103.14 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=78.8
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.|+..+.||+|+||.||+|.. .+++.+|+|.+..... ...+.+.+|+.++++++|+||+++++++...+..++|+||
T Consensus 1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~ 80 (264)
T cd06626 1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY 80 (264)
T ss_pred CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence 377788999999999999996 4678999999975443 3667899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++++|.+++++
T Consensus 81 ~~~~~L~~~~~~ 92 (264)
T cd06626 81 CSGGTLEELLEH 92 (264)
T ss_pred CCCCcHHHHHhh
Confidence 999999998854
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-10 Score=123.28 Aligned_cols=128 Identities=26% Similarity=0.311 Sum_probs=74.6
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccc--cCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNN--LTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
...+.+.+-+|++. .++.... .++|++|-+.+|. +..+.. ..|..++.|.+|||++|.-.+.+|..++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~--------~ff~~m~~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISG--------EFFRSLPLLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred hheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCH--------HHHhhCcceEEEECCCCCccCcCChHHh
Confidence 35566666666665 3333322 2356666666664 333321 3355666666777766666556666666
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccC
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYN 159 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 159 (524)
++. +|+.|++++..+. .+|..+.+|..|.+|++..+......|.....+++|++|.+...
T Consensus 593 ~Li-~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 593 ELV-HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhh-hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 665 6666666666665 56666666666666666665544444555555666666665443
|
|
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=106.68 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=75.7
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|...+.||+|+||.||+|+.. +++.+|+|.++... ......+.+|++++++++||||+++++++..++..++||||
T Consensus 6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 85 (309)
T cd07872 6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY 85 (309)
T ss_pred CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence 56888899999999999999964 67889999997543 22345678899999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++ +|.+++.+
T Consensus 86 ~~~-~l~~~~~~ 96 (309)
T cd07872 86 LDK-DLKQYMDD 96 (309)
T ss_pred CCC-CHHHHHHh
Confidence 985 88887753
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=105.95 Aligned_cols=84 Identities=19% Similarity=0.248 Sum_probs=69.4
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHH-HHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECE-VLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~-~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||+||+|.. .+|+.+|+|++.... ......+.+|.. +++.++||||+++++++..++..|+||||+++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~ 80 (325)
T cd05604 1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG 80 (325)
T ss_pred CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence 3689999999999996 578999999997542 223445666665 46789999999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 ~~L~~~l~~ 89 (325)
T cd05604 81 GELFFHLQR 89 (325)
T ss_pred CCHHHHHHH
Confidence 999988753
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=104.50 Aligned_cols=92 Identities=23% Similarity=0.304 Sum_probs=77.6
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcC------
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNP------ 502 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~------ 502 (524)
.+++.|+..+.+|+|+||.||+|.. .+++.+|+|.+..... ....+.+|+.+++++ +||||+++++++...
T Consensus 3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~ 81 (272)
T cd06637 3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD 81 (272)
T ss_pred ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCc-cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence 4667899999999999999999996 4678899999875432 345788999999998 799999999998753
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...|+||||+.+|+|.+++++
T Consensus 82 ~~~~iv~e~~~~~~L~~~l~~ 102 (272)
T cd06637 82 DQLWLVMEFCGAGSVTDLIKN 102 (272)
T ss_pred cEEEEEEEcCCCCcHHHHHHh
Confidence 357999999999999998864
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=106.79 Aligned_cols=93 Identities=20% Similarity=0.311 Sum_probs=77.7
Q ss_pred hhhccccccCcccCCCCceEEEEEeC--------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTIS--------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCS 500 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~ 500 (524)
...++|...+.+|+|+||.||+++.. ....+|+|.+.... ......+.+|+++++++ +||||++++++|.
T Consensus 9 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~ 88 (314)
T cd05099 9 FPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCT 88 (314)
T ss_pred ccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEc
Confidence 34467888999999999999999741 23468999887533 34456788999999999 6999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.....++||||+++|+|.+++++
T Consensus 89 ~~~~~~lv~e~~~~g~L~~~i~~ 111 (314)
T cd05099 89 QEGPLYVIVEYAAKGNLREFLRA 111 (314)
T ss_pred cCCceEEEEecCCCCcHHHHHHh
Confidence 99999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=103.03 Aligned_cols=88 Identities=25% Similarity=0.383 Sum_probs=75.4
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---------HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---------RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
|.....||+|+||.||+|.. .+++.+|+|.+..... ...+.+.+|+.++++++||||+++++++...+..
T Consensus 2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 81 (267)
T cd06628 2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL 81 (267)
T ss_pred ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence 56778999999999999996 4678899998854321 1235688999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++++|.+++++
T Consensus 82 ~lv~e~~~~~~L~~~l~~ 99 (267)
T cd06628 82 NIFLEYVPGGSVAALLNN 99 (267)
T ss_pred EEEEEecCCCCHHHHHHh
Confidence 999999999999999864
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=101.89 Aligned_cols=84 Identities=29% Similarity=0.448 Sum_probs=74.6
Q ss_pred CcccCCCCceEEEEEeCCCCEEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCHH
Q 040301 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISIT 518 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~ 518 (524)
+.+|+|+||.||++...+++.||+|.+..... .....+.+|+++++.++||||+++++++.+....++||||+++++|.
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~ 80 (251)
T cd05041 1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL 80 (251)
T ss_pred CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence 36899999999999986689999999875443 35678999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 040301 519 IIRRH 523 (524)
Q Consensus 519 ~~l~~ 523 (524)
+++++
T Consensus 81 ~~l~~ 85 (251)
T cd05041 81 TFLRK 85 (251)
T ss_pred HHHHh
Confidence 99854
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=116.57 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=79.1
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|.+.+.||+|+||.||+|... +++.||||++.... ......+.+|+.+++.++||||+++++++...+..|+||
T Consensus 4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm 83 (669)
T cd05610 4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM 83 (669)
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence 57888999999999999999974 68899999996532 233567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 84 Ey~~g~~L~~li~~ 97 (669)
T cd05610 84 EYLIGGDVKSLLHI 97 (669)
T ss_pred eCCCCCCHHHHHHh
Confidence 99999999999863
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=106.69 Aligned_cols=89 Identities=21% Similarity=0.144 Sum_probs=74.2
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~ 509 (524)
+|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+..|.+++..+. |++|+++++++.+.+..|+||
T Consensus 1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (323)
T cd05615 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM 80 (323)
T ss_pred CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence 366778999999999999996 468899999997543 223456778999998885 577888999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 Ey~~~g~L~~~i~~ 94 (323)
T cd05615 81 EYVNGGDLMYHIQQ 94 (323)
T ss_pred cCCCCCcHHHHHHH
Confidence 99999999998864
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.8e-10 Score=103.91 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=77.1
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|...+.+|+|+||.||++.. .++..+|+|.+.... ....+.+.+|+.++++++|+||+++++++..++..++|+||
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~ 80 (257)
T cd08225 1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY 80 (257)
T ss_pred CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence 367788999999999999997 457889999986532 23456788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++++|.+++.+
T Consensus 81 ~~~~~L~~~~~~ 92 (257)
T cd08225 81 CDGGDLMKRINR 92 (257)
T ss_pred CCCCcHHHHHHh
Confidence 999999998853
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=106.43 Aligned_cols=89 Identities=21% Similarity=0.145 Sum_probs=74.5
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 509 (524)
+|...+.||+|+||.||+|... +++.||+|.+.... ....+.+..|..++... +|++|+++++++...+..++||
T Consensus 1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (323)
T cd05616 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM 80 (323)
T ss_pred CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence 4778889999999999999964 57889999997543 22344567788888877 5899999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 E~~~~g~L~~~~~~ 94 (323)
T cd05616 81 EYVNGGDLMYQIQQ 94 (323)
T ss_pred cCCCCCCHHHHHHH
Confidence 99999999988853
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=102.92 Aligned_cols=84 Identities=14% Similarity=0.255 Sum_probs=71.0
Q ss_pred CcccCCCCceEEEEEeCC-------------CCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 440 NLLGTGSFGSVYKGTISD-------------WTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~-------------~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
+.||+|+||.||+|+... ...+|+|.+..........|.+|+.+++.++||||+++++++..+...+
T Consensus 1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~ 80 (262)
T cd05077 1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI 80 (262)
T ss_pred CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence 368999999999998521 2248889886655555668889999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|..++++
T Consensus 81 lv~e~~~~~~l~~~~~~ 97 (262)
T cd05077 81 MVEEFVEFGPLDLFMHR 97 (262)
T ss_pred EEEecccCCCHHHHHHh
Confidence 99999999999988753
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=105.49 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=76.1
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.||+|+||.||+|... +++.||+|.+.... ......+.+|+.++++++||||+++++++..++..++||||
T Consensus 6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~ 85 (301)
T cd07873 6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 85 (301)
T ss_pred cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence 46888999999999999999964 67889999986543 22345677899999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
++ |+|.+++.+
T Consensus 86 ~~-~~l~~~l~~ 96 (301)
T cd07873 86 LD-KDLKQYLDD 96 (301)
T ss_pred cc-cCHHHHHHh
Confidence 97 599888753
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=103.79 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=77.3
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.+|+|+||.||+|.. .+++.||+|++.... ....+.+.+|+.++++++||||+++++++..+...++||||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~ 80 (286)
T cd07832 1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY 80 (286)
T ss_pred CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence 477888999999999999996 468899999997543 33456789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+ +++|.+++++
T Consensus 81 ~-~~~L~~~~~~ 91 (286)
T cd07832 81 M-PSDLSEVLRD 91 (286)
T ss_pred c-CCCHHHHHHh
Confidence 9 9999998853
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=107.63 Aligned_cols=92 Identities=20% Similarity=0.306 Sum_probs=77.5
Q ss_pred hhccccccCcccCCCCceEEEEEeC--------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS--------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSN 501 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 501 (524)
....|++.+.||+|+||.||+|... .+..+|+|.+.... ....+++.+|+++++++ +||||++++++|..
T Consensus 10 ~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 89 (334)
T cd05100 10 SRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 89 (334)
T ss_pred CHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEcc
Confidence 3456888999999999999999741 12368999886533 34567899999999999 89999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..++||||+++|+|.+++++
T Consensus 90 ~~~~~lv~e~~~~g~L~~~l~~ 111 (334)
T cd05100 90 DGPLYVLVEYASKGNLREYLRA 111 (334)
T ss_pred CCceEEEEecCCCCcHHHHHHh
Confidence 9999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=103.74 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=74.6
Q ss_pred ccccccCcccCCCCceEEEEEeCC----CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISD----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.+|...+.+|+|+||.||+|...+ ...+|+|...... ....+.+.+|+.++++++||||+++++++.+ +..++|
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv 84 (270)
T cd05056 6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIV 84 (270)
T ss_pred hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEE
Confidence 457788899999999999998632 2468999886544 4456789999999999999999999998875 567899
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 85 ~e~~~~~~L~~~l~~ 99 (270)
T cd05056 85 MELAPLGELRSYLQV 99 (270)
T ss_pred EEcCCCCcHHHHHHh
Confidence 999999999999864
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=105.11 Aligned_cols=90 Identities=28% Similarity=0.424 Sum_probs=76.3
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCC--EEEEEEeecc-chHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWT--NVAIKIFNLQ-LERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~--~vavK~~~~~-~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv 508 (524)
++|+..+.||+|+||.||+|... ++. .+|+|.++.. .....+.|.+|+++++++ +||||+++++++...+..++|
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 81 (297)
T cd05089 2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA 81 (297)
T ss_pred ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence 46888899999999999999864 333 4788888643 234557789999999999 799999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
+||+++|+|.+++++
T Consensus 82 ~e~~~~~~L~~~l~~ 96 (297)
T cd05089 82 IEYAPYGNLLDFLRK 96 (297)
T ss_pred EEecCCCcHHHHHHh
Confidence 999999999999853
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=105.74 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=78.5
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
+|+..+.||+|+||.||+|... +++.+|+|.+..... ...+.+.+|+++++.++||||+++++++......++|||
T Consensus 2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e 81 (316)
T cd05574 2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD 81 (316)
T ss_pred ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence 6788899999999999999974 588999999975432 245678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 82 ~~~~~~L~~~~~~ 94 (316)
T cd05574 82 YCPGGELFRLLQR 94 (316)
T ss_pred ecCCCCHHHHHHh
Confidence 9999999999863
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=103.55 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=78.0
Q ss_pred hhccccccCcccCCCCceEEEEEeCC-----CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEc-CCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISD-----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSN-PDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~~~ 504 (524)
..++|...+.||+|+||.||+|.... +..||+|.+.... ....+.+.+|+.++++++||||+++++++.. +..
T Consensus 4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 83 (280)
T cd05043 4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEP 83 (280)
T ss_pred chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 34678888999999999999999744 5779999886543 3446778999999999999999999998876 577
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++++||+++|+|.+++++
T Consensus 84 ~~~~~~~~~~~~L~~~l~~ 102 (280)
T cd05043 84 PFVLYPYMNWGNLKLFLQQ 102 (280)
T ss_pred CEEEEEcCCCCcHHHHHHh
Confidence 8999999999999999854
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.6e-10 Score=105.77 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=71.5
Q ss_pred CcccCCCCceEEEEEeC-C-------CCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 440 NLLGTGSFGSVYKGTIS-D-------WTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~-~-------~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+.||+|+||.||+|... . ...+|+|.+........+.+.+|+.+++.++||||+++++++..++..++||||
T Consensus 1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~ 80 (258)
T cd05078 1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY 80 (258)
T ss_pred CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence 36899999999999852 1 234888888655555567889999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 81 ~~~g~L~~~l~~ 92 (258)
T cd05078 81 VKFGSLDTYLKK 92 (258)
T ss_pred CCCCcHHHHHhc
Confidence 999999999864
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-09 Score=102.88 Aligned_cols=89 Identities=26% Similarity=0.393 Sum_probs=75.7
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCC----EEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWT----NVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.+|+..+.||+|+||.||+|... +|. .+|+|.+.... .....++.+|+.++++++||||+++++++.. +..++
T Consensus 7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~ 85 (279)
T cd05057 7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL 85 (279)
T ss_pred HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence 56788899999999999999863 332 58999886543 3456788999999999999999999999987 78999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 86 v~e~~~~g~L~~~l~~ 101 (279)
T cd05057 86 ITQLMPLGCLLDYVRN 101 (279)
T ss_pred EEecCCCCcHHHHHHh
Confidence 9999999999999864
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-10 Score=104.39 Aligned_cols=87 Identities=23% Similarity=0.328 Sum_probs=75.0
Q ss_pred ccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchH--HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 436 FNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLER--AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~--~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
|+..+.||+|+||.||++... +++.+|+|.+...... ......+|+.++++++||||+++++++...+..++||||+
T Consensus 1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~ 80 (260)
T PF00069_consen 1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC 80 (260)
T ss_dssp EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence 567789999999999999974 5668999999876532 2234466999999999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
++++|.+++.
T Consensus 81 ~~~~L~~~l~ 90 (260)
T PF00069_consen 81 PGGSLQDYLQ 90 (260)
T ss_dssp TTEBHHHHHH
T ss_pred cccccccccc
Confidence 9999999886
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=105.56 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=71.5
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.. .+++.+|+|.+.... ....+.+.+|+.++.++ +||||+++++++...+..|+||||+++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~ 80 (327)
T cd05617 1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG 80 (327)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence 3689999999999996 467889999997643 23345688999999888 699999999999999999999999999
Q ss_pred CCHHHHHH
Q 040301 515 ISITIIRR 522 (524)
Q Consensus 515 gsL~~~l~ 522 (524)
|+|.++++
T Consensus 81 ~~L~~~~~ 88 (327)
T cd05617 81 GDLMFHMQ 88 (327)
T ss_pred CcHHHHHH
Confidence 99998875
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=104.51 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=76.6
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+....+|+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e 80 (286)
T cd07847 1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE 80 (286)
T ss_pred CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence 35888899999999999999974 68899999986432 2234568899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|++++++..+++
T Consensus 81 ~~~~~~l~~~~~ 92 (286)
T cd07847 81 YCDHTVLNELEK 92 (286)
T ss_pred ccCccHHHHHHh
Confidence 999998887764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=103.40 Aligned_cols=89 Identities=21% Similarity=0.316 Sum_probs=77.0
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCC---CCCccceeEEEEcCCcceEEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVC---HRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~---H~niv~l~~~~~~~~~~~lv~ 509 (524)
.|+..+.+|+|+||.||+|.. .+++.+|+|.+.... ....+++.+|+.++++++ |||++++++++..++..++||
T Consensus 2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~ 81 (277)
T cd06917 2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM 81 (277)
T ss_pred hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence 477788999999999999996 578899999986543 334567889999999986 999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++++|.+++++
T Consensus 82 e~~~~~~L~~~~~~ 95 (277)
T cd06917 82 EYAEGGSVRTLMKA 95 (277)
T ss_pred ecCCCCcHHHHHHc
Confidence 99999999998853
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-09 Score=105.08 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=75.3
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-----HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
|+..+.||+|+||.||+|.. .+++.||+|.+..... .....+.+|++++++++|+||+++++++.+++..++||
T Consensus 2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~ 81 (298)
T cd07841 2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF 81 (298)
T ss_pred ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence 67778999999999999996 4688999999975432 23456778999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+ +|+|.+++++
T Consensus 82 e~~-~~~L~~~i~~ 94 (298)
T cd07841 82 EFM-ETDLEKVIKD 94 (298)
T ss_pred ccc-CCCHHHHHhc
Confidence 999 8999999864
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=104.78 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=70.5
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.. .+++.||+|.++... ....+.+..|.+++... +||||+++++++.+.+..|+||||+++
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~ 80 (316)
T cd05620 1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG 80 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence 3689999999999997 468899999997643 22345567788888754 899999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 g~L~~~i~~ 89 (316)
T cd05620 81 GDLMFHIQD 89 (316)
T ss_pred CcHHHHHHH
Confidence 999988853
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=103.81 Aligned_cols=88 Identities=20% Similarity=0.296 Sum_probs=75.3
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.||+|++|.||+|+. .++..||+|.+.... ......+.+|+.++++++||||+++++++..++..++||||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 80 (285)
T cd07861 1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF 80 (285)
T ss_pred CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence 477888999999999999996 468899999986432 22346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
++ |+|.+++++
T Consensus 81 ~~-~~l~~~~~~ 91 (285)
T cd07861 81 LS-MDLKKYLDS 91 (285)
T ss_pred CC-CCHHHHHhc
Confidence 98 689888753
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.8e-10 Score=106.44 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=76.2
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.||+|+||.||+|... +++.+|+|.+.... ....+.+.+|+++++.++||||+++++++..++..++||||
T Consensus 2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 81 (286)
T cd07846 2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEF 81 (286)
T ss_pred ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEec
Confidence 5788899999999999999974 58899999885432 22356788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
++++++.++.+
T Consensus 82 ~~~~~l~~~~~ 92 (286)
T cd07846 82 VDHTVLDDLEK 92 (286)
T ss_pred CCccHHHHHHh
Confidence 99999887764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=101.17 Aligned_cols=87 Identities=25% Similarity=0.436 Sum_probs=75.8
Q ss_pred cccCcccCCCCceEEEEEeCC-----CCEEEEEEeeccchH-HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 437 NECNLLGTGSFGSVYKGTISD-----WTNVAIKIFNLQLER-AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~~~-----~~~vavK~~~~~~~~-~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
+..+.+|.|+||.||++...+ +..+|+|.+...... ..+.+.+|++++..++|+||+++++++.+.+..+++||
T Consensus 2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e 81 (258)
T smart00219 2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME 81 (258)
T ss_pred cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence 456789999999999999643 378999999755432 56789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.++++.
T Consensus 82 ~~~~~~l~~~~~~ 94 (258)
T smart00219 82 YMEGGDLLDYLRK 94 (258)
T ss_pred ccCCCCHHHHHHh
Confidence 9999999999863
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=102.35 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=73.3
Q ss_pred ccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--CcceE
Q 040301 436 FNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKAL 507 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~l 507 (524)
|+..+.||+|+||+||.+.+ .++..||+|.+.... ......|.+|++++++++||||+++++++... ...++
T Consensus 6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 85 (283)
T cd05080 6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL 85 (283)
T ss_pred ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence 47788999999999988653 356789999997543 33456788999999999999999999998764 35899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 86 v~e~~~~~~l~~~~~~ 101 (283)
T cd05080 86 IMEYVPLGSLRDYLPK 101 (283)
T ss_pred EecCCCCCCHHHHHHH
Confidence 9999999999998753
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=107.45 Aligned_cols=94 Identities=19% Similarity=0.353 Sum_probs=76.7
Q ss_pred hhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEc
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSN 501 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 501 (524)
..+.+.|++.+.||+|+||.||+|.. .+++.||+|+++... ....+.+.+|+.++.++ +|+||++++++|..
T Consensus 3 ~~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~ 82 (337)
T cd05054 3 EFPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTK 82 (337)
T ss_pred ccCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEec
Confidence 34456799999999999999999973 234689999987543 23446788999999999 89999999998865
Q ss_pred C-CcceEEEcccCCCCHHHHHHh
Q 040301 502 P-DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~-~~~~lv~e~~~~gsL~~~l~~ 523 (524)
. ..+++||||+++|+|.++++.
T Consensus 83 ~~~~~~~v~ey~~~~~L~~~i~~ 105 (337)
T cd05054 83 PGGPLMVIVEYCKFGNLSNYLRS 105 (337)
T ss_pred CCCCEEEEEecCCCCCHHHHHHh
Confidence 4 568899999999999999853
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-09 Score=112.34 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=82.8
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEc
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSN 501 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 501 (524)
..++.+...++-|++.+.+|.|.+|.||+++. ++++..|+|++....+ ..++...|.++++.. .|||++.++|++..
T Consensus 9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-~deEiE~eynil~~~~~hpnv~~fyg~~~k 87 (953)
T KOG0587|consen 9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-EEEEIELEYNMLKKYSHHPNVATFYGAFIK 87 (953)
T ss_pred cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc-ccHHHHHHHHHHHhccCCCCcceEEEEEEE
Confidence 34566667788899999999999999999994 6788999999876543 335566788888876 79999999999865
Q ss_pred -----CCcceEEEcccCCCCHHHHHHh
Q 040301 502 -----PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 -----~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++++|+|||||.+||..|+++.
T Consensus 88 ~~~~~~DqLWLVMEfC~gGSVTDLVKn 114 (953)
T KOG0587|consen 88 KDPGNGDQLWLVMEFCGGGSVTDLVKN 114 (953)
T ss_pred ecCCCCCeEEEEeeccCCccHHHHHhh
Confidence 5789999999999999999875
|
|
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-09 Score=101.99 Aligned_cols=92 Identities=23% Similarity=0.287 Sum_probs=78.8
Q ss_pred hhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCC-----
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPD----- 503 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~----- 503 (524)
.++++|+..+.+|+|+||.||+|... +++.+|+|.+..... ..+++.+|+.+++++ +|+||+++++++....
T Consensus 3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~ 81 (275)
T cd06608 3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND 81 (275)
T ss_pred CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcc
Confidence 46788999999999999999999974 578899999876543 346789999999999 7999999999997654
Q ss_pred -cceEEEcccCCCCHHHHHHh
Q 040301 504 -FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 -~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++++|.+++++
T Consensus 82 ~~~~lv~e~~~~~~L~~~~~~ 102 (275)
T cd06608 82 DQLWLVMELCGGGSVTDLVKG 102 (275)
T ss_pred eEEEEEEEcCCCCcHHHHHHH
Confidence 48999999999999998864
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=102.21 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=71.0
Q ss_pred ccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 442 LGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 442 ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
||+|+||.||+|.. .+|+.+|+|.+.... ....+.+.+|+++++.++||||+++++++...+..|+||||+++|+|
T Consensus 1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (277)
T cd05577 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL 80 (277)
T ss_pred CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence 68999999999986 468899999997533 22345677899999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 040301 518 TIIRRH 523 (524)
Q Consensus 518 ~~~l~~ 523 (524)
.+++.+
T Consensus 81 ~~~l~~ 86 (277)
T cd05577 81 KYHIYN 86 (277)
T ss_pred HHHHHH
Confidence 998854
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=102.13 Aligned_cols=82 Identities=18% Similarity=0.370 Sum_probs=68.9
Q ss_pred CcccCCCCceEEEEEeCC-C----------CEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 440 NLLGTGSFGSVYKGTISD-W----------TNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~-~----------~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
+.||+|+||.||+|...+ + ..+++|.+...... ...|.+|+.+++.++||||+++++++.. +..++|
T Consensus 1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv 78 (259)
T cd05037 1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMV 78 (259)
T ss_pred CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEE
Confidence 368999999999999743 3 24777877654332 6788999999999999999999999988 788999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 79 ~e~~~~~~L~~~l~~ 93 (259)
T cd05037 79 EEYVKFGPLDVFLHR 93 (259)
T ss_pred EEcCCCCcHHHHHHh
Confidence 999999999999864
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=104.36 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=76.0
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.||+|++|.||+|... +++.||+|.+..... .....+.+|+++++.++||||+++++++.+++..++||||
T Consensus 5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (291)
T cd07844 5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY 84 (291)
T ss_pred cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence 57888899999999999999964 678999999865432 2234567899999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+. |+|.+++.+
T Consensus 85 ~~-~~L~~~~~~ 95 (291)
T cd07844 85 LD-TDLKQYMDD 95 (291)
T ss_pred CC-CCHHHHHHh
Confidence 98 599988753
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=101.60 Aligned_cols=83 Identities=24% Similarity=0.249 Sum_probs=72.0
Q ss_pred CcccCCCCceEEEEEeC--CCC--EEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTIS--DWT--NVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~--~~~--~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|++|.||+|.+. +++ .+|+|.+..... ...+.+.+|++++++++||||+++++++.. ...++||||+++
T Consensus 1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~ 79 (257)
T cd05040 1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL 79 (257)
T ss_pred CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence 36899999999999963 333 589999976554 567789999999999999999999999988 889999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 80 ~~L~~~l~~ 88 (257)
T cd05040 80 GSLLDRLRK 88 (257)
T ss_pred CcHHHHHHh
Confidence 999999864
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-09 Score=101.31 Aligned_cols=87 Identities=24% Similarity=0.415 Sum_probs=72.4
Q ss_pred ccccCcccCCCCceEEEEEeC-C---CCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc-----
Q 040301 436 FNECNLLGTGSFGSVYKGTIS-D---WTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF----- 504 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~-~---~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~----- 504 (524)
|...+.+|+|+||.||+|... + +..+|+|.++... ......+.+|++.+++++||||+++++++...+.
T Consensus 1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 80 (273)
T cd05035 1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP 80 (273)
T ss_pred CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence 456789999999999999863 2 3679999987533 3345679999999999999999999999876554
Q ss_pred -ceEEEcccCCCCHHHHHH
Q 040301 505 -KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 -~~lv~e~~~~gsL~~~l~ 522 (524)
.++|+||+++|+|.+++.
T Consensus 81 ~~~~v~e~~~~~~l~~~l~ 99 (273)
T cd05035 81 KPMVILPFMKHGDLHSFLL 99 (273)
T ss_pred ccEEEEeccCCCCHHHHHH
Confidence 799999999999998873
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=105.12 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=77.4
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
..|+....||+|+||.||++.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++..++..++|+||+
T Consensus 21 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~ 100 (297)
T cd06659 21 SLLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFL 100 (297)
T ss_pred hhHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecC
Confidence 3455566899999999999996 468899999997654445567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 101 ~~~~L~~~~~~ 111 (297)
T cd06659 101 QGGALTDIVSQ 111 (297)
T ss_pred CCCCHHHHHhh
Confidence 99999988753
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-09 Score=104.01 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=68.2
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHH-HHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECE-VLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~-~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.. .+++.||+|.+.... ......+.+|.. +++.++||||+++++++..++..|+||||+++
T Consensus 1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~ 80 (325)
T cd05602 1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING 80 (325)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence 3689999999999996 467889999997533 122334445544 56789999999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 ~~L~~~~~~ 89 (325)
T cd05602 81 GELFYHLQR 89 (325)
T ss_pred CcHHHHHHh
Confidence 999998853
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-10 Score=101.40 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=82.9
Q ss_pred hhhhccccccCcccCCCCceEEEEE-eCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----- 503 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 503 (524)
......|.+.+.+|+|||+.||.++ ..++..||+|++.....++.+...+|++..++++|||++++++++..+.
T Consensus 17 ~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~ 96 (302)
T KOG2345|consen 17 IINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKH 96 (302)
T ss_pred EEcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCce
Confidence 3445679999999999999999999 5788899999998877778888999999999999999999999886544
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.||+++|...|||.+.+++
T Consensus 97 ~~yll~Pyy~~Gsl~d~i~~ 116 (302)
T KOG2345|consen 97 EAYLLLPYYKRGSLLDEIER 116 (302)
T ss_pred eEEEEeehhccccHHHHHHH
Confidence 48999999999999999865
|
|
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-09 Score=102.91 Aligned_cols=99 Identities=20% Similarity=0.280 Sum_probs=83.2
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEc
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSN 501 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 501 (524)
.++.++..+.+.|+..+.+|.|+||.||+|.. .+++.+|+|.+..... ...++..|+.++.++ +||||+++++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~ 84 (282)
T cd06636 6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTED-EEEEIKLEINMLKKYSHHRNIATYYGAFIK 84 (282)
T ss_pred hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChH-HHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence 46677777888999999999999999999996 5678899999865432 345688899999998 79999999999853
Q ss_pred ------CCcceEEEcccCCCCHHHHHHh
Q 040301 502 ------PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ------~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+..++||||+++|+|.++++.
T Consensus 85 ~~~~~~~~~~~iv~e~~~~~~L~~~~~~ 112 (282)
T cd06636 85 KSPPGHDDQLWLVMEFCGAGSVTDLVKN 112 (282)
T ss_pred ccccCCCCEEEEEEEeCCCCcHHHHHHH
Confidence 4568999999999999998854
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.6e-09 Score=99.98 Aligned_cols=90 Identities=17% Similarity=0.270 Sum_probs=75.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-----hHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-----ERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFK 505 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~ 505 (524)
.+|+..+.+|+|+||.||+|.. .++..||+|.+.... .+..+.+.+|+.++++++||||+++++++.+ +...
T Consensus 2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (266)
T cd06651 2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL 81 (266)
T ss_pred CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence 3688889999999999999996 468899999886432 2334578899999999999999999999876 3568
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++++||+++++|.+++++
T Consensus 82 ~l~~e~~~~~~L~~~l~~ 99 (266)
T cd06651 82 TIFMEYMPGGSVKDQLKA 99 (266)
T ss_pred EEEEeCCCCCcHHHHHHH
Confidence 899999999999998853
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-09 Score=111.46 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=78.8
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC--
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-- 503 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-- 503 (524)
.....++|...+.||+|+||.||+|.. .+++.||||.+.... ......+.+|+..+..++|+||+++++.+...+
T Consensus 27 ~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~ 106 (496)
T PTZ00283 27 AKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPR 106 (496)
T ss_pred ccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceeccccc
Confidence 344557899999999999999999985 578999999996543 345567889999999999999999998776533
Q ss_pred ------cceEEEcccCCCCHHHHHHh
Q 040301 504 ------FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ------~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 107 ~~~~~~~i~lV~Ey~~~gsL~~~l~~ 132 (496)
T PTZ00283 107 NPENVLMIALVLDYANAGDLRQEIKS 132 (496)
T ss_pred CcccceEEEEEEeCCCCCcHHHHHHH
Confidence 36899999999999998863
|
|
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=104.62 Aligned_cols=88 Identities=22% Similarity=0.190 Sum_probs=76.8
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
.|.....||+|+||.||++.. .++..||||.+........+.+.+|+.+++.++||||+++++++..++..++||||++
T Consensus 23 ~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~ 102 (292)
T cd06658 23 YLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLE 102 (292)
T ss_pred HHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCC
Confidence 344456799999999999986 4688999999876555556778999999999999999999999999999999999999
Q ss_pred CCCHHHHHH
Q 040301 514 NISITIIRR 522 (524)
Q Consensus 514 ~gsL~~~l~ 522 (524)
+++|.++++
T Consensus 103 ~~~L~~~~~ 111 (292)
T cd06658 103 GGALTDIVT 111 (292)
T ss_pred CCcHHHHHh
Confidence 999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=100.52 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=68.3
Q ss_pred cccCCCCceEEEEEeC---CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCC
Q 040301 441 LLGTGSFGSVYKGTIS---DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNIS 516 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gs 516 (524)
.||+|+||.||+|.+. ++..||+|.+.... ....+.|.+|+.++++++||||+++++++. .+..++||||+++|+
T Consensus 2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~ 80 (257)
T cd05115 2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGP 80 (257)
T ss_pred ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCC
Confidence 4899999999999852 34569999986543 334567999999999999999999999885 557899999999999
Q ss_pred HHHHHH
Q 040301 517 ITIIRR 522 (524)
Q Consensus 517 L~~~l~ 522 (524)
|.++++
T Consensus 81 L~~~l~ 86 (257)
T cd05115 81 LNKFLS 86 (257)
T ss_pred HHHHHH
Confidence 999985
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-09 Score=100.82 Aligned_cols=84 Identities=26% Similarity=0.450 Sum_probs=74.0
Q ss_pred CcccCCCCceEEEEEeCC----CCEEEEEEeeccchH-HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTISD----WTNVAIKIFNLQLER-AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~----~~~vavK~~~~~~~~-~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.... +..+|+|.+...... ..+.+.+|++.++.++|+||+++++++......++||||+++
T Consensus 1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~ 80 (262)
T cd00192 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG 80 (262)
T ss_pred CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence 468999999999999643 778999999765432 367889999999999999999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 ~~L~~~l~~ 89 (262)
T cd00192 81 GDLLDYLRK 89 (262)
T ss_pred CcHHHHHhh
Confidence 999999875
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-09 Score=102.66 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=76.2
Q ss_pred cccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~ 505 (524)
+|+..+.||+|+||.||.+.. .+|..||+|.+.... ....+.+.+|+.+++++ +|+||+++++++..+...
T Consensus 1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~ 80 (290)
T cd05613 1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL 80 (290)
T ss_pred CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence 477788999999999999985 368899999997533 22346788999999999 699999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 81 ~lv~e~~~~~~L~~~l~~ 98 (290)
T cd05613 81 HLILDYINGGELFTHLSQ 98 (290)
T ss_pred EEEEecCCCCcHHHHHHH
Confidence 999999999999999853
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-09 Score=105.93 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=72.5
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----cce
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-----FKA 506 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-----~~~ 506 (524)
.|+..+.||+|+||.||+|.. .+++.||||++.... ......+.+|++++++++||||+++++++.... ..|
T Consensus 1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~ 80 (338)
T cd07859 1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY 80 (338)
T ss_pred CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence 377788999999999999996 468899999986432 234457889999999999999999999886532 479
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|||||. ++|.+++++
T Consensus 81 lv~e~~~-~~L~~~l~~ 96 (338)
T cd07859 81 VVFELME-SDLHQVIKA 96 (338)
T ss_pred EEEecCC-CCHHHHHHh
Confidence 9999996 699988753
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-09 Score=100.14 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=75.1
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcceEEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFKALMW 509 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~~lv~ 509 (524)
+|+..+.+|.|+||.||++.. .+++.+|+|.+.... ....+++.+|++++++++||||+++++++.. +...+++|
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~ 80 (265)
T cd08217 1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM 80 (265)
T ss_pred CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence 477888999999999999996 567889999986432 3445678899999999999999999998864 34679999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 81 e~~~~~~L~~~l~~ 94 (265)
T cd08217 81 EYCEGGDLAQLIQK 94 (265)
T ss_pred hhccCCCHHHHHHH
Confidence 99999999999853
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-09 Score=100.68 Aligned_cols=84 Identities=29% Similarity=0.432 Sum_probs=71.0
Q ss_pred CcccCCCCceEEEEEeC-CCC--EEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTIS-DWT--NVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~-~~~--~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.+|+|+||.||+|... ++. .+|+|.+.... ....+.+.+|+++++++ +||||+++++++...+..++||||+++
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~ 80 (270)
T cd05047 1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH 80 (270)
T ss_pred CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence 36899999999999974 443 46888886433 34556789999999999 899999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 ~~L~~~i~~ 89 (270)
T cd05047 81 GNLLDFLRK 89 (270)
T ss_pred CcHHHHHHh
Confidence 999999863
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-09 Score=100.04 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=72.3
Q ss_pred ccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 442 LGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 442 ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
||.|+||.||+|... +++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++.++...++|+||+++|+|
T Consensus 1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (262)
T cd05572 1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL 80 (262)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence 689999999999974 57899999997543 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 040301 518 TIIRRH 523 (524)
Q Consensus 518 ~~~l~~ 523 (524)
.+++++
T Consensus 81 ~~~l~~ 86 (262)
T cd05572 81 WTILRD 86 (262)
T ss_pred HHHHhh
Confidence 999864
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-09 Score=102.43 Aligned_cols=88 Identities=19% Similarity=0.319 Sum_probs=75.3
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
+|+..+.||+|++|.||+|+. .+|+.||+|.+.... ......+.+|+++++.++||||+++++++...+..++||||+
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 80 (284)
T cd07836 1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM 80 (284)
T ss_pred CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence 478889999999999999997 468889999997543 223456778999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++ +|.++++.
T Consensus 81 ~~-~l~~~~~~ 90 (284)
T cd07836 81 DK-DLKKYMDT 90 (284)
T ss_pred Cc-cHHHHHHh
Confidence 84 88888753
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-09 Score=99.40 Aligned_cols=82 Identities=20% Similarity=0.279 Sum_probs=69.2
Q ss_pred cccCCCCceEEEEEe---CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCC
Q 040301 441 LLGTGSFGSVYKGTI---SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNI 515 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~g 515 (524)
.||+|+||.||+|.+ .++..+|+|.++... ....+++.+|+.+++.++||||+++++++. .+..++||||+++|
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~ 80 (257)
T cd05116 2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG 80 (257)
T ss_pred cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence 589999999999975 356789999986433 334678999999999999999999999885 55779999999999
Q ss_pred CHHHHHHh
Q 040301 516 SITIIRRH 523 (524)
Q Consensus 516 sL~~~l~~ 523 (524)
+|.+++++
T Consensus 81 ~L~~~l~~ 88 (257)
T cd05116 81 PLNKFLQK 88 (257)
T ss_pred cHHHHHHh
Confidence 99999853
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-09 Score=101.88 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=72.9
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHH-HhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEV-LRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~-l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+..+.||+|+||.||++.. .+|+.||+|+++... .....++..|+.. ++..+||||+++++++..++..++|||
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e 80 (283)
T cd06617 1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME 80 (283)
T ss_pred CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence 3688889999999999999997 468999999997543 2234456667765 566799999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|++ |+|.+++++
T Consensus 81 ~~~-~~l~~~l~~ 92 (283)
T cd06617 81 VMD-TSLDKFYKK 92 (283)
T ss_pred hhc-ccHHHHHHH
Confidence 997 688888753
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-09 Score=102.66 Aligned_cols=85 Identities=24% Similarity=0.211 Sum_probs=74.8
Q ss_pred ccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCC
Q 040301 438 ECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNIS 516 (524)
Q Consensus 438 ~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gs 516 (524)
....||+|+||.||++.. .++..+|+|.+..........+.+|+.+++.++|+||+++++++..++..++||||+++++
T Consensus 24 ~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~ 103 (292)
T cd06657 24 NFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGA 103 (292)
T ss_pred hHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCc
Confidence 345799999999999986 5788999999865444456678999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 040301 517 ITIIRR 522 (524)
Q Consensus 517 L~~~l~ 522 (524)
|.+++.
T Consensus 104 L~~~~~ 109 (292)
T cd06657 104 LTDIVT 109 (292)
T ss_pred HHHHHh
Confidence 998874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-09 Score=100.04 Aligned_cols=88 Identities=19% Similarity=0.318 Sum_probs=73.7
Q ss_pred cccccCcccCCCCceEEEEEeCC--CCEEEEEEeeccc----------hHHHHHHHHHHHHHhc-CCCCCccceeEEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTISD--WTNVAIKIFNLQL----------ERAFRSFDSECEVLRN-VCHRNLIKILSSCSN 501 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~~--~~~vavK~~~~~~----------~~~~~~~~~Ei~~l~~-l~H~niv~l~~~~~~ 501 (524)
+|+..+.||+|+||.||+|.... ++.+|+|.+.... .....++.+|+.++.+ ++||||+++++++..
T Consensus 1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~ 80 (269)
T cd08528 1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE 80 (269)
T ss_pred CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence 47788899999999999999743 6789999885321 2234567889988875 799999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHH
Q 040301 502 PDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~ 522 (524)
++..++||||+++++|.+++.
T Consensus 81 ~~~~~lv~e~~~~~~l~~~l~ 101 (269)
T cd08528 81 NDRLYIVMDLIEGAPLGEHFN 101 (269)
T ss_pred CCeEEEEEecCCCCcHHHHHH
Confidence 999999999999999998874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=103.01 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=76.2
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++.+|...+.||+|+||.||+|.. .++..||+|.+.... .+....+.+|+.+++.++|+||+++++++..++..++||
T Consensus 3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~ 82 (291)
T cd07870 3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF 82 (291)
T ss_pred ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence 457899999999999999999986 468899999986543 223346778999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+. +++.+++.
T Consensus 83 e~~~-~~l~~~~~ 94 (291)
T cd07870 83 EYMH-TDLAQYMI 94 (291)
T ss_pred eccc-CCHHHHHH
Confidence 9996 68877664
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-09 Score=101.28 Aligned_cols=90 Identities=20% Similarity=0.301 Sum_probs=76.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--HHHHHHHHHHHHHhcCCCCC-ccceeEEEEcCC-----
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--RAFRSFDSECEVLRNVCHRN-LIKILSSCSNPD----- 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~Ei~~l~~l~H~n-iv~l~~~~~~~~----- 503 (524)
...|+..+.+|+|.||+||+|+. .+|+.||+|++....+ +...-..+|+.++++++|+| ||++++++.+..
T Consensus 10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~ 89 (323)
T KOG0594|consen 10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI 89 (323)
T ss_pred HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence 45677888999999999999995 6789999999975432 23345679999999999999 999999999877
Q ss_pred -cceEEEcccCCCCHHHHHHh
Q 040301 504 -FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 -~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+++||||++. +|.++++.
T Consensus 90 ~~l~lvfe~~d~-DL~~ymd~ 109 (323)
T KOG0594|consen 90 GKLYLVFEFLDR-DLKKYMDS 109 (323)
T ss_pred ceEEEEEEeecc-cHHHHHHh
Confidence 78999999985 99999865
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=8e-10 Score=78.81 Aligned_cols=61 Identities=36% Similarity=0.473 Sum_probs=53.5
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPL 88 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 88 (524)
++|+.|++++|+++...+..|.++++|++|++++|+++.++. ..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~--------~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP--------DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET--------TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH--------HHHcCCCCCCEEeCcCCcC
Confidence 478999999999997777888999999999999999988765 7889999999999999875
|
... |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-09 Score=106.55 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=73.8
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----cce
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-----FKA 506 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-----~~~ 506 (524)
+|+..+.||+|+||.||++.. .+++.||+|++.... ....+.+.+|+++++.++||||+++++++...+ ..|
T Consensus 1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 80 (372)
T cd07853 1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY 80 (372)
T ss_pred CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence 477889999999999999996 578999999986432 234567889999999999999999999998876 789
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+|+||+. ++|.+++.
T Consensus 81 lv~e~~~-~~l~~~~~ 95 (372)
T cd07853 81 VVTELMQ-SDLHKIIV 95 (372)
T ss_pred EEeeccc-cCHHHHHh
Confidence 9999997 58887764
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-09 Score=98.79 Aligned_cols=90 Identities=19% Similarity=0.296 Sum_probs=75.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-----hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--Ccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-----ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFK 505 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~ 505 (524)
.+|...+.+|+|+||.||+|.. .++..+|+|.+.... .+....+.+|++++++++||||+++++++.+. ...
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (264)
T cd06653 2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL 81 (264)
T ss_pred CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence 4688899999999999999996 468899999885321 23456788999999999999999999998764 458
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|+||+++++|.++++.
T Consensus 82 ~~v~e~~~~~~L~~~~~~ 99 (264)
T cd06653 82 SIFVEYMPGGSIKDQLKA 99 (264)
T ss_pred EEEEEeCCCCcHHHHHHH
Confidence 899999999999998853
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.5e-10 Score=110.91 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=76.0
Q ss_pred cccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCHHH
Q 040301 441 LLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISITI 519 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~ 519 (524)
++|+|.||+||.|+. .+...+|||.++....+..+-...||...++++|.|||+++|+|.+++.+-|.||-++||||.+
T Consensus 582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSs 661 (1226)
T KOG4279|consen 582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSS 661 (1226)
T ss_pred EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHH
Confidence 689999999999995 5667799999988776677788899999999999999999999999999999999999999999
Q ss_pred HHHh
Q 040301 520 IRRH 523 (524)
Q Consensus 520 ~l~~ 523 (524)
+||.
T Consensus 662 LLrs 665 (1226)
T KOG4279|consen 662 LLRS 665 (1226)
T ss_pred HHHh
Confidence 9975
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-09 Score=103.05 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=68.7
Q ss_pred hhhhccccccCcccCCCCceEEEEEeC--CCCEEEEEEeecc-----chHHHHHHHHHHHHHhcCCCCCccceeEEEEcC
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTIS--DWTNVAIKIFNLQ-----LERAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~vavK~~~~~-----~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 502 (524)
....++|...+.||+|+||+||+|... +++.+|||++... .....+.|.+|++++++++|+|++..+.. .
T Consensus 14 ~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~ 90 (365)
T PRK09188 14 PALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---T 90 (365)
T ss_pred ccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---c
Confidence 345577999999999999999999863 5777899987532 12235679999999999999999953322 2
Q ss_pred CcceEEEcccCCCCHHH
Q 040301 503 DFKALMWGRLLNISITI 519 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~ 519 (524)
+..|+||||++|++|..
T Consensus 91 ~~~~LVmE~~~G~~L~~ 107 (365)
T PRK09188 91 GKDGLVRGWTEGVPLHL 107 (365)
T ss_pred CCcEEEEEccCCCCHHH
Confidence 46899999999999973
|
|
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.2e-09 Score=97.68 Aligned_cols=89 Identities=30% Similarity=0.409 Sum_probs=78.3
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch--HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE--RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.+|+|++|.||++... +++.+|+|.+..... ...+.+.+|++++++++|||++++++++.+++..++||||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~ 80 (254)
T cd06627 1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY 80 (254)
T ss_pred CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence 3677889999999999999864 678899999976543 4567899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++++|.+++.+
T Consensus 81 ~~~~~L~~~~~~ 92 (254)
T cd06627 81 AENGSLRQIIKK 92 (254)
T ss_pred CCCCcHHHHHHh
Confidence 999999998854
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-09 Score=101.67 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=76.0
Q ss_pred ccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
.+|...+.+|+|+||.||+|... ++..||+|.+.... ....+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus 5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~ 84 (283)
T cd05091 5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLS 84 (283)
T ss_pred HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceE
Confidence 35777889999999999999852 24679999997543 233567889999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+++||+++++|.+++.
T Consensus 85 ~~~e~~~~~~l~~~l~ 100 (283)
T cd05091 85 MIFSYCSHSDLHEFLV 100 (283)
T ss_pred EEEEcCCCCcHHHHHH
Confidence 9999999999999974
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=98.92 E-value=7e-09 Score=99.82 Aligned_cols=89 Identities=25% Similarity=0.221 Sum_probs=77.6
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
.|...+.||+|++|.||++.. .+++.+|+|.+........+.+.+|+.+++.++||||+++++++..++..++|+||++
T Consensus 20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~ 99 (285)
T cd06648 20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLE 99 (285)
T ss_pred hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccC
Confidence 455667999999999999996 4678899999875544455678899999999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+++|.+++++
T Consensus 100 ~~~L~~~~~~ 109 (285)
T cd06648 100 GGALTDIVTH 109 (285)
T ss_pred CCCHHHHHHh
Confidence 9999998753
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-09 Score=102.78 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=78.1
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~ 509 (524)
+|...+.||+|+||.||+|.. .++..+|+|.+.... ....+.+.+|++++++++ ||||+++++++..++..++||
T Consensus 2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~ 81 (280)
T cd05581 2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL 81 (280)
T ss_pred CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence 688889999999999999996 468899999986532 233567889999999998 999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 82 e~~~~~~L~~~l~~ 95 (280)
T cd05581 82 EYAPNGELLQYIRK 95 (280)
T ss_pred cCCCCCcHHHHHHH
Confidence 99999999999864
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-09 Score=99.76 Aligned_cols=86 Identities=20% Similarity=0.335 Sum_probs=74.1
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
.+|+..+.+|+|+||.||++.. +++.+|+|.++... ..+.+.+|+.++++++||||+++++++..+ ..++||||++
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~ 81 (254)
T cd05083 6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELMS 81 (254)
T ss_pred HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECCC
Confidence 5688899999999999999875 66789999986543 346788999999999999999999998654 5799999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+|+|.++++.
T Consensus 82 ~~~L~~~l~~ 91 (254)
T cd05083 82 KGNLVNFLRT 91 (254)
T ss_pred CCCHHHHHHh
Confidence 9999999864
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-09 Score=102.20 Aligned_cols=84 Identities=27% Similarity=0.461 Sum_probs=71.5
Q ss_pred CcccCCCCceEEEEEeCC-------CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 440 NLLGTGSFGSVYKGTISD-------WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~-------~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+.+|+|+||.||+|+..+ +..+|+|.+.... .....++.+|+.+++.++||||+++++++...+..++||||
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 80 (269)
T cd05044 1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL 80 (269)
T ss_pred CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence 368999999999998632 2568999886543 23466789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 81 ~~~~~L~~~l~~ 92 (269)
T cd05044 81 MEGGDLLSYLRD 92 (269)
T ss_pred cCCCcHHHHHHH
Confidence 999999999863
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-09 Score=98.00 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=78.5
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|...+.+|+|+||.||++... ++..+|+|++.... ....+.+.+|++++++++|||++++.+++..++..++|+||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~ 80 (258)
T cd08215 1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY 80 (258)
T ss_pred CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence 4777889999999999999974 68899999997543 34567789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++++|.+++++
T Consensus 81 ~~~~~L~~~l~~ 92 (258)
T cd08215 81 ADGGDLSQKIKK 92 (258)
T ss_pred cCCCcHHHHHHH
Confidence 999999998864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.8e-09 Score=97.18 Aligned_cols=89 Identities=24% Similarity=0.295 Sum_probs=79.4
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
+|+..+.+|+|++|.||++... ++..+++|++........+.+.+|++.++.++|++++++++++..+...++++||++
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~ 80 (253)
T cd05122 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS 80 (253)
T ss_pred CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence 4777889999999999999974 688899999976654466789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+++|.+++.+
T Consensus 81 ~~~L~~~~~~ 90 (253)
T cd05122 81 GGSLKDLLKS 90 (253)
T ss_pred CCcHHHHHhh
Confidence 9999998854
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-09 Score=98.46 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=74.9
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-CcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-DFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-~~~~lv~e 510 (524)
+|+..+.+|+|++|.||++.. .+++.+|+|.+.... ....+.+.+|++++++++|+|++++++.+... ...++|||
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e 80 (257)
T cd08223 1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG 80 (257)
T ss_pred CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence 478889999999999999996 457889999996432 33456788999999999999999999988644 46799999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 81 ~~~~~~l~~~l~~ 93 (257)
T cd08223 81 FCEGGDLYHKLKE 93 (257)
T ss_pred ccCCCcHHHHHHH
Confidence 9999999998864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-09 Score=118.77 Aligned_cols=275 Identities=21% Similarity=0.216 Sum_probs=179.4
Q ss_pred cccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCC--CCCCCChhHhcCcccccEEEeccCcccccC
Q 040301 40 FGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNP--LGGILPPVIGNFSASFQNFYAFNCKLKGNI 117 (524)
Q Consensus 40 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 117 (524)
..+....+...+-+|.+..+.. -.+.+.|.+|-+.+|. +....+..|..++ .|..|||++|.-.+.+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~----------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAG----------SSENPKLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNSSLSKL 587 (889)
T ss_pred ccchhheeEEEEeccchhhccC----------CCCCCccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCCccCcC
Confidence 3445678888998888876642 2233579999999996 5545555677787 9999999998887899
Q ss_pred CccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcc--cccCCccccC
Q 040301 118 PQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKL--SGHIPPCLAS 195 (524)
Q Consensus 118 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~ 195 (524)
|..+++|.+|++|++++..+. .+|..+.++.+|.+|++..+.....+|.....+++|++|.+..... ....-..+..
T Consensus 588 P~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~ 666 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELEN 666 (889)
T ss_pred ChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhc
Confidence 999999999999999999998 7889999999999999999987767778888899999999876542 2222233455
Q ss_pred CCCCCEEEccCCcCCCccChhccCCCCCC----EEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-cccc-----
Q 040301 196 LTSLRELHLGSNKLTSSIPSSLWSLEYIL----MINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIG----- 265 (524)
Q Consensus 196 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~----- 265 (524)
+.+|+.+....... .+-..+..+.+|. .+.+.++... ..+..+..+.+|+.|.+.++.+.+.. ....
T Consensus 667 Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~ 743 (889)
T KOG4658|consen 667 LEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVL 743 (889)
T ss_pred ccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchh
Confidence 66666666543332 1111122222222 3333333322 34556778888899888888775432 1111
Q ss_pred c-cCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcc
Q 040301 266 A-LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 266 ~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 330 (524)
. ++++..+...++... ..+.+....++|+.|++..+.....+......+..++.+-+..+.+.+
T Consensus 744 ~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 744 LCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 1 223333333333222 223333456788888888887765665555555556554444444443
|
|
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-09 Score=103.33 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=71.9
Q ss_pred cCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCC
Q 040301 439 CNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNI 515 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~g 515 (524)
.+.+|+|.||+||.|.. ++|+.||||.+++.. .++..+..+|+.+|..+.||.||.+.--|.+.+.+++|||-+. |
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~-G 647 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLH-G 647 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhc-c
Confidence 57899999999999996 679999999997654 3455788999999999999999999999999999999999886 5
Q ss_pred CHHHHH
Q 040301 516 SITIIR 521 (524)
Q Consensus 516 sL~~~l 521 (524)
+..+.|
T Consensus 648 DMLEMI 653 (888)
T KOG4236|consen 648 DMLEMI 653 (888)
T ss_pred hHHHHH
Confidence 766655
|
|
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.7e-09 Score=98.70 Aligned_cols=88 Identities=22% Similarity=0.279 Sum_probs=74.8
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEE-cCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCS-NPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~-~~~~~~lv~e~ 511 (524)
..+|+..+.+|+|+||.||++... +..+|+|.+.... ..+.|.+|+.++++++|+|++++++++. +++..++||||
T Consensus 5 ~~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~ 81 (256)
T cd05082 5 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 81 (256)
T ss_pred HHhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEEC
Confidence 357888899999999999999864 6789999886433 3467889999999999999999999765 45678999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 82 ~~~~~L~~~~~~ 93 (256)
T cd05082 82 MAKGSLVDYLRS 93 (256)
T ss_pred CCCCcHHHHHHh
Confidence 999999999864
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.8e-09 Score=97.63 Aligned_cols=89 Identities=24% Similarity=0.360 Sum_probs=78.1
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--CcceEEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKALMW 509 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~lv~ 509 (524)
+|...+.||+|++|.||+|... +++.+++|.+.... ....+.+.+|+.++++++||||+++++++... ...++|+
T Consensus 1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~ 80 (260)
T cd06606 1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL 80 (260)
T ss_pred CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence 3667789999999999999975 68899999997544 24567889999999999999999999999988 8899999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++++|.+++.+
T Consensus 81 e~~~~~~L~~~~~~ 94 (260)
T cd06606 81 EYVSGGSLSSLLKK 94 (260)
T ss_pred EecCCCcHHHHHHH
Confidence 99999999998864
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.7e-09 Score=99.19 Aligned_cols=89 Identities=24% Similarity=0.308 Sum_probs=71.9
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCC----EEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWT----NVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.+|+..+.||+|+||.||+|.+ .+++ .+|+|.+.... .....++..|+..+++++||||+++++++. +...++
T Consensus 7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~ 85 (279)
T cd05111 7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQL 85 (279)
T ss_pred hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEE
Confidence 4678889999999999999996 3444 47778775432 233467888888999999999999999875 456789
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|+||+++|+|.+++++
T Consensus 86 i~e~~~~gsL~~~l~~ 101 (279)
T cd05111 86 VTQLSPLGSLLDHVRQ 101 (279)
T ss_pred EEEeCCCCcHHHHHHh
Confidence 9999999999999853
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-09 Score=101.94 Aligned_cols=87 Identities=23% Similarity=0.324 Sum_probs=74.6
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.||+|++|.||+|.. .+++.||||.+.... ......+.+|++++++++||||+++++++.+++..++||||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 80 (284)
T cd07860 1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF 80 (284)
T ss_pred CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence 477888999999999999996 468899999886433 22345788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+. ++|.++++
T Consensus 81 ~~-~~l~~~~~ 90 (284)
T cd07860 81 LH-QDLKKFMD 90 (284)
T ss_pred cc-cCHHHHHH
Confidence 96 68888774
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=101.29 Aligned_cols=89 Identities=24% Similarity=0.229 Sum_probs=75.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
...|+..+.+|+|+||.||+|.. .+++.||+|.+.... ....+++.+|+++++.++||||+++.++|..++..++|
T Consensus 14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv 93 (307)
T cd06607 14 EKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLV 93 (307)
T ss_pred chhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEE
Confidence 34588889999999999999996 468899999986432 33456788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||++ |++.+++.
T Consensus 94 ~e~~~-g~l~~~~~ 106 (307)
T cd06607 94 MEYCL-GSASDILE 106 (307)
T ss_pred HHhhC-CCHHHHHH
Confidence 99997 57777653
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-10 Score=119.33 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=84.7
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
..++.-..++|.+.++||+|+||.|..+++ .+++.||+|++.+.. .....-|..|-.+|..-+.+=||++..+|++
T Consensus 67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD 146 (1317)
T KOG0612|consen 67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD 146 (1317)
T ss_pred HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence 355556678999999999999999999997 467889999997643 2345668889999999999999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.++|+|||||+||+|..+|-+
T Consensus 147 ~~~LYlVMdY~pGGDlltLlSk 168 (1317)
T KOG0612|consen 147 ERYLYLVMDYMPGGDLLTLLSK 168 (1317)
T ss_pred ccceEEEEecccCchHHHHHhh
Confidence 9999999999999999988865
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-09 Score=107.61 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=75.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcce
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~ 506 (524)
..++|...+++|+|+||+|+.+.. .+++.+|||.+++.. ....+....|.+|+... +||.+++++.+|++.+.+|
T Consensus 366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~ 445 (694)
T KOG0694|consen 366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLF 445 (694)
T ss_pred cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEE
Confidence 446788999999999999999997 467899999998754 33456677888888766 5999999999999999999
Q ss_pred EEEcccCCCCHHHH
Q 040301 507 LMWGRLLNISITII 520 (524)
Q Consensus 507 lv~e~~~~gsL~~~ 520 (524)
.||||+.||++..+
T Consensus 446 fvmey~~Ggdm~~~ 459 (694)
T KOG0694|consen 446 FVMEYVAGGDLMHH 459 (694)
T ss_pred EEEEecCCCcEEEE
Confidence 99999999995433
|
|
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5e-11 Score=104.83 Aligned_cols=89 Identities=21% Similarity=0.346 Sum_probs=77.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.+.|+..+.||+|.|+.||++.. ++|+.+|+|+++-.. ..+.++..+|+++=+.++|||||++...+.+....|||+
T Consensus 10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF 89 (355)
T KOG0033|consen 10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 89 (355)
T ss_pred chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence 35688888999999999999985 688999999886433 335678899999999999999999999999999999999
Q ss_pred cccCCCCHHHHH
Q 040301 510 GRLLNISITIIR 521 (524)
Q Consensus 510 e~~~~gsL~~~l 521 (524)
|+|+||+|..-|
T Consensus 90 e~m~G~dl~~eI 101 (355)
T KOG0033|consen 90 DLVTGGELFEDI 101 (355)
T ss_pred ecccchHHHHHH
Confidence 999999997644
|
|
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.1e-09 Score=97.60 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=69.3
Q ss_pred CcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEc-CCcceEEEcccC
Q 040301 440 NLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSN-PDFKALMWGRLL 513 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~~~~~lv~e~~~ 513 (524)
+.||+|+||.||+|... .+..+|+|.+.... ....+.+.+|+.+++.++||||+++++++.. +...++||||+.
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~ 80 (262)
T cd05058 1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK 80 (262)
T ss_pred CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence 36899999999999852 23569999986433 3456788899999999999999999998764 556899999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+|+|.+++++
T Consensus 81 ~~~L~~~~~~ 90 (262)
T cd05058 81 HGDLRNFIRS 90 (262)
T ss_pred CCCHHHHHHh
Confidence 9999999864
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.3e-09 Score=97.61 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=69.6
Q ss_pred CcccCCCCceEEEEEeC--C--CCEEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTIS--D--WTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~--~--~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.+. + +..+|+|.+..... ...+++.+|+.++++++||||+++++++. .+..++||||+++
T Consensus 1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~ 79 (257)
T cd05060 1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL 79 (257)
T ss_pred CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence 36899999999999852 2 26799999975543 35678999999999999999999999876 5568999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 80 ~~L~~~l~~ 88 (257)
T cd05060 80 GPLLKYLKK 88 (257)
T ss_pred CcHHHHHHh
Confidence 999999864
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.7e-09 Score=101.35 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=71.9
Q ss_pred CcccCC--CCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTG--SFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g--~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
..||+| +||+||.+.. .+|+.||+|.+.... ....+.+.+|+.+++.++||||++++++|..++..++|+||+.+
T Consensus 4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~ 83 (328)
T cd08226 4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY 83 (328)
T ss_pred HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence 356666 8899999996 578999999986533 33456788999999999999999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|++.+++++
T Consensus 84 ~~l~~~l~~ 92 (328)
T cd08226 84 GSANSLLKT 92 (328)
T ss_pred CCHHHHHHh
Confidence 999999864
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-09 Score=102.21 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=75.6
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.||+|+||.||+|... +++.||+|.++... ....+.+.+|++++++++|+||+++++++..++..++||||
T Consensus 2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~ 81 (288)
T cd07833 2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY 81 (288)
T ss_pred ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence 5788899999999999999974 57889999986532 33456789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
++++.+..+.+
T Consensus 82 ~~~~~l~~~~~ 92 (288)
T cd07833 82 VERTLLELLEA 92 (288)
T ss_pred CCCCHHHHHHh
Confidence 99877766554
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.4e-09 Score=102.78 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=78.8
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc-C
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN-P 502 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~ 502 (524)
.++...+++|+..+.||+|+||.||+|.. .+++.+|+|++.... ....+.+.+|++++++++||||+++.+++.. .
T Consensus 3 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 82 (328)
T cd07856 3 GTVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPL 82 (328)
T ss_pred cceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCC
Confidence 34556788899999999999999999985 478899999885422 2345678899999999999999999999876 5
Q ss_pred CcceEEEcccCCCCHHHHHH
Q 040301 503 DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~ 522 (524)
...++|+||+ +++|.++++
T Consensus 83 ~~~~lv~e~~-~~~L~~~~~ 101 (328)
T cd07856 83 EDIYFVTELL-GTDLHRLLT 101 (328)
T ss_pred CcEEEEeehh-ccCHHHHHh
Confidence 6789999998 568988875
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.2e-09 Score=98.65 Aligned_cols=90 Identities=26% Similarity=0.356 Sum_probs=75.0
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCC----EEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWT----NVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
..+|+..+.||+|+||+||+|.+ .++. .||+|.+.... ....+++.+|+.+++.+.||||+++++++.. ...+
T Consensus 6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~ 84 (279)
T cd05109 6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQ 84 (279)
T ss_pred hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcE
Confidence 35688889999999999999985 3444 48999986543 3446778999999999999999999999975 4578
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+++||+++|+|.+++++
T Consensus 85 l~~~~~~~g~l~~~l~~ 101 (279)
T cd05109 85 LVTQLMPYGCLLDYVRE 101 (279)
T ss_pred EEEEcCCCCCHHHHHhh
Confidence 99999999999999864
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.3e-09 Score=98.13 Aligned_cols=85 Identities=20% Similarity=0.379 Sum_probs=69.5
Q ss_pred cccCcccCCCCceEEEEEeCC-CC--EEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------Ccc
Q 040301 437 NECNLLGTGSFGSVYKGTISD-WT--NVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------DFK 505 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~~~-~~--~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------~~~ 505 (524)
...+.||+|+||.||+|+..+ +. .+|+|.++... ....+.+.+|+++++.++||||+++++++... ...
T Consensus 2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 81 (272)
T cd05075 2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP 81 (272)
T ss_pred ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence 456789999999999999743 33 58999886532 34567889999999999999999999987542 246
Q ss_pred eEEEcccCCCCHHHHH
Q 040301 506 ALMWGRLLNISITIIR 521 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l 521 (524)
++||||+++|+|.+++
T Consensus 82 ~~v~e~~~~~~l~~~~ 97 (272)
T cd05075 82 VVILPFMKHGDLHSFL 97 (272)
T ss_pred EEEEEeCCCCcHHHHH
Confidence 8999999999999887
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.7e-10 Score=104.92 Aligned_cols=90 Identities=21% Similarity=0.278 Sum_probs=73.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---h----HHHHHHHHHHHHHhcCCCCCccceeEEEEc-CCc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---E----RAFRSFDSECEVLRNVCHRNLIKILSSCSN-PDF 504 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~~~ 504 (524)
+.|-....+|+|+|+.||+|.. ...+.||||+-.... + ...+...+|.++.+.++||.||++|+|+.- .+.
T Consensus 463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtds 542 (775)
T KOG1151|consen 463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDS 542 (775)
T ss_pred HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccc
Confidence 4577788999999999999994 567889999764322 1 123456799999999999999999999964 578
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
+|-|+|||+|.+|.-||++
T Consensus 543 FCTVLEYceGNDLDFYLKQ 561 (775)
T KOG1151|consen 543 FCTVLEYCEGNDLDFYLKQ 561 (775)
T ss_pred ceeeeeecCCCchhHHHHh
Confidence 9999999999999998864
|
|
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.8e-09 Score=98.49 Aligned_cols=89 Identities=24% Similarity=0.244 Sum_probs=77.6
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+|+..+.+|+|+||.||++.. .+++.+|+|.+.... ......+.+|+++++.++|+||+++.+++......++||||
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~ 80 (256)
T cd08530 1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY 80 (256)
T ss_pred CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence 477788999999999999985 467889999987543 34456788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++++|.+++++
T Consensus 81 ~~~~~L~~~~~~ 92 (256)
T cd08530 81 APFGDLSKAISK 92 (256)
T ss_pred cCCCCHHHHHHH
Confidence 999999998864
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.9e-09 Score=98.90 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=72.2
Q ss_pred ccCCCCceEEEEEeC-CCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 442 LGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 442 ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
+|+|+||.||++... +++.+|+|.+..... ...+.+.+|++++++++||||+++++++..+...|+||||+++|+|
T Consensus 1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (265)
T cd05579 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL 80 (265)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence 589999999999975 588999999965432 3456788999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 040301 518 TIIRRH 523 (524)
Q Consensus 518 ~~~l~~ 523 (524)
.+++++
T Consensus 81 ~~~l~~ 86 (265)
T cd05579 81 ASLLEN 86 (265)
T ss_pred HHHHHH
Confidence 998864
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=100.59 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=67.5
Q ss_pred ccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC---CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 442 LGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV---CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 442 ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
||+|+||.||+|+. .+++.||||++.... ......+..|..++... +||+|+++++++.+.+..|+||||+++
T Consensus 1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~ 80 (330)
T cd05586 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG 80 (330)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence 69999999999996 468899999996532 12234456677777665 699999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 81 g~L~~~l~~ 89 (330)
T cd05586 81 GELFWHLQK 89 (330)
T ss_pred ChHHHHHHh
Confidence 999988754
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.8e-09 Score=99.97 Aligned_cols=88 Identities=19% Similarity=0.323 Sum_probs=75.0
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+..+.||+|++|.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 81 (294)
T PLN00009 2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE 81 (294)
T ss_pred CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence 4688889999999999999996 468899999986432 2234568899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|++ +++.++++
T Consensus 82 ~~~-~~l~~~~~ 92 (294)
T PLN00009 82 YLD-LDLKKHMD 92 (294)
T ss_pred ccc-ccHHHHHH
Confidence 996 58887764
|
|
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.1e-09 Score=103.82 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=72.0
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.+|+..+.||+|+||.||+|.. .+++.||+|... .+.+.+|++++++++|||||++++++......++|+||+
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~ 165 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRY 165 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecC
Confidence 5699999999999999999996 568899999653 234678999999999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
. |+|.+++.
T Consensus 166 ~-~~L~~~l~ 174 (391)
T PHA03212 166 K-TDLYCYLA 174 (391)
T ss_pred C-CCHHHHHH
Confidence 6 68888875
|
|
| >PRK10345 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=92.59 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=67.1
Q ss_pred ccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcC-----CCCCccceeEEEEcCC---c-c
Q 040301 436 FNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNV-----CHRNLIKILSSCSNPD---F-K 505 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-----~H~niv~l~~~~~~~~---~-~ 505 (524)
+.....||+|+||.||. .+ ++.. +||++........+++.+|+.+++.+ +||||++++|++.++. . +
T Consensus 4 L~~~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~ 80 (210)
T PRK10345 4 LSEQSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY 80 (210)
T ss_pred cCCcceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence 34567899999999995 43 3444 79988765444567799999999999 6799999999999874 4 3
Q ss_pred eEEEcc--cCCCCHHHHHHh
Q 040301 506 ALMWGR--LLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~--~~~gsL~~~l~~ 523 (524)
.+|+|| +++|+|.+++++
T Consensus 81 ~~I~e~~G~~~~tL~~~l~~ 100 (210)
T PRK10345 81 DVIADFDGKPSITLTEFAEQ 100 (210)
T ss_pred EEEecCCCCcchhHHHHHHc
Confidence 489999 668999999864
|
|
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.4e-09 Score=99.40 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=74.9
Q ss_pred cccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~ 505 (524)
+|+..+.||+|+||.||+++. .+++.+|||.+.... ....+.+.+|+.++.++ +||||+++.+++..+...
T Consensus 1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~ 80 (288)
T cd05583 1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL 80 (288)
T ss_pred CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence 367778999999999999884 356789999987532 22346788999999999 699999999999999999
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++||||+++|+|.+++.
T Consensus 81 ~lv~e~~~~~~L~~~~~ 97 (288)
T cd05583 81 HLILDYVNGGELFTHLY 97 (288)
T ss_pred EEEEecCCCCcHHHHHh
Confidence 99999999999999875
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-09 Score=98.88 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=76.3
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCCCCCccceeEEEEc-----C
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSSCSN-----P 502 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-----~ 502 (524)
.....|...+.+|+|.||.|+.+.. .+|+.||+|++... ..-..++-.||+++++.++|+||+.++..+.. -
T Consensus 19 ~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f 98 (359)
T KOG0660|consen 19 EIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKF 98 (359)
T ss_pred eccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccc
Confidence 4455676678999999999999996 57899999999632 23456788899999999999999999999876 3
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
..+|+|+|+|+ -+|++.|+.
T Consensus 99 ~DvYiV~elMe-tDL~~iik~ 118 (359)
T KOG0660|consen 99 NDVYLVFELME-TDLHQIIKS 118 (359)
T ss_pred ceeEEehhHHh-hHHHHHHHc
Confidence 46899999996 499888863
|
|
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=98.76 Aligned_cols=90 Identities=28% Similarity=0.437 Sum_probs=73.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCC----EEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWT----NVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
..+|+..+.||+|+||.||+|.. .++. .+|+|.+.... .....++.+|+.++++++||||++++|+|... ..+
T Consensus 6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~ 84 (303)
T cd05110 6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQ 84 (303)
T ss_pred hhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Cce
Confidence 35677888999999999999985 3443 47888886543 33345788999999999999999999998754 578
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|+||+++|+|.+++++
T Consensus 85 ~v~e~~~~g~l~~~~~~ 101 (303)
T cd05110 85 LVTQLMPHGCLLDYVHE 101 (303)
T ss_pred eeehhcCCCCHHHHHHh
Confidence 99999999999999853
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=97.76 Aligned_cols=88 Identities=23% Similarity=0.327 Sum_probs=68.7
Q ss_pred cccccCcccCCCCceEEEEEe-C-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC---CCCCccceeEEEEc-----C
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-S-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV---CHRNLIKILSSCSN-----P 502 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~~-----~ 502 (524)
+|+..+.||+|+||.||+|.. . +++.+|+|.+.... ......+.+|+.+++.+ +||||++++++|.. .
T Consensus 2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~ 81 (290)
T cd07862 2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE 81 (290)
T ss_pred CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence 688889999999999999986 3 46789999986433 22334566777776655 79999999999863 3
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...++||||++ |+|.+++++
T Consensus 82 ~~~~lv~e~~~-~~l~~~~~~ 101 (290)
T cd07862 82 TKLTLVFEHVD-QDLTTYLDK 101 (290)
T ss_pred CcEEEEEccCC-CCHHHHHHh
Confidence 56899999997 699988753
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=100.66 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=75.8
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC---
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD--- 503 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~--- 503 (524)
....+.|+..+.||+|+||.||++.. .++..||||++.... ....+.+.+|+.++++++||||+++++++..+.
T Consensus 11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 90 (343)
T cd07880 11 WEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD 90 (343)
T ss_pred hccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence 34567899999999999999999985 578899999985432 333556889999999999999999999987654
Q ss_pred ---cceEEEcccCCCCHHHHHH
Q 040301 504 ---FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 ---~~~lv~e~~~~gsL~~~l~ 522 (524)
..++||||+ +++|.++++
T Consensus 91 ~~~~~~lv~e~~-~~~l~~~~~ 111 (343)
T cd07880 91 RFHDFYLVMPFM-GTDLGKLMK 111 (343)
T ss_pred ccceEEEEEecC-CCCHHHHHh
Confidence 358999999 679988774
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=98.68 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=75.4
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch--HHHHHHHHHHHHHhcCCCCCccceeEEEEcC--CcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE--RAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~l 507 (524)
.++|+..+.||+|+||.||+|... +++.+|+|.++.... .....+.+|+.++++++||||+++++++... ...++
T Consensus 4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~l 83 (293)
T cd07843 4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYM 83 (293)
T ss_pred hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEE
Confidence 357888999999999999999974 578899999975432 2234577899999999999999999999877 88999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+. ++|.+++..
T Consensus 84 v~e~~~-~~L~~~~~~ 98 (293)
T cd07843 84 VMEYVE-HDLKSLMET 98 (293)
T ss_pred EehhcC-cCHHHHHHh
Confidence 999998 599888753
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=98.21 Aligned_cols=87 Identities=21% Similarity=0.316 Sum_probs=74.4
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
|+..+.+|+|++|.||+|.. .+|..||+|++.... ....+.+.+|++++++++|||++++++++.+++..++||||+
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~ 80 (283)
T cd07835 1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL 80 (283)
T ss_pred CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence 56678899999999999996 478999999986543 223456889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
+ ++|.+++.+
T Consensus 81 ~-~~l~~~~~~ 90 (283)
T cd07835 81 D-LDLKKYMDS 90 (283)
T ss_pred C-cCHHHHHhh
Confidence 5 699998854
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=104.59 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=69.1
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--------
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-------- 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-------- 502 (524)
...+|+..+.||+|+||.||+|.. .+++.||||++.... ....+|+.+++.++|||||++++++...
T Consensus 64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~ 139 (440)
T PTZ00036 64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN 139 (440)
T ss_pred cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence 345799999999999999999996 568899999885432 2234799999999999999999987432
Q ss_pred CcceEEEcccCCCCHHHHHH
Q 040301 503 DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~ 522 (524)
..+++||||+++ ++.++++
T Consensus 140 ~~l~lvmE~~~~-~l~~~~~ 158 (440)
T PTZ00036 140 IFLNVVMEFIPQ-TVHKYMK 158 (440)
T ss_pred eEEEEEEecCCc-cHHHHHH
Confidence 246799999984 7877764
|
|
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-08 Score=99.31 Aligned_cols=87 Identities=22% Similarity=0.293 Sum_probs=72.9
Q ss_pred cccccCcccCCCCceEEEEEeC---CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--Ccce
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS---DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKA 506 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~ 506 (524)
.|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|+.++++++||||+++++++... +..+
T Consensus 1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (316)
T cd07842 1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY 80 (316)
T ss_pred CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence 3677789999999999999963 57899999997632 33346678899999999999999999999988 7899
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+||||+++ ++.+++.
T Consensus 81 lv~e~~~~-~l~~~~~ 95 (316)
T cd07842 81 LLFDYAEH-DLWQIIK 95 (316)
T ss_pred EEEeCCCc-CHHHHHH
Confidence 99999985 7777663
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=98.23 Aligned_cols=87 Identities=23% Similarity=0.230 Sum_probs=73.8
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.|...+.+|+|+||.||++.. .++..+|+|.+.... ......+.+|++++++++|||++++++++..++..++|||
T Consensus 26 ~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 105 (317)
T cd06635 26 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVME 105 (317)
T ss_pred hhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEe
Confidence 367788999999999999996 467889999986432 2345678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+. |++.+++.
T Consensus 106 ~~~-g~l~~~~~ 116 (317)
T cd06635 106 YCL-GSASDLLE 116 (317)
T ss_pred CCC-CCHHHHHH
Confidence 997 58877663
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=98.95 Aligned_cols=91 Identities=23% Similarity=0.326 Sum_probs=75.0
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC----
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD---- 503 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~---- 503 (524)
...++|+..+.+|+|+||.||+|.. .+++.||+|.++... ......+.+|++++++++||||+++++++.+.+
T Consensus 4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~ 83 (302)
T cd07864 4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD 83 (302)
T ss_pred hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence 3456899999999999999999997 468899999996533 223456788999999999999999999997755
Q ss_pred ------cceEEEcccCCCCHHHHHH
Q 040301 504 ------FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 ------~~~lv~e~~~~gsL~~~l~ 522 (524)
..++|+||+++ ++.+++.
T Consensus 84 ~~~~~~~~~lv~e~~~~-~l~~~l~ 107 (302)
T cd07864 84 FKKDKGAFYLVFEYMDH-DLMGLLE 107 (302)
T ss_pred ccccCCcEEEEEcccCc-cHHHHHh
Confidence 78999999986 7766654
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-09 Score=75.28 Aligned_cols=59 Identities=32% Similarity=0.381 Sum_probs=28.9
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNN 160 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 160 (524)
+|+.|++++|++....+..|.++++|++|++++|.+..+.+.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555555544444444455555555555555544444444555555555554443
|
... |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-08 Score=95.63 Aligned_cols=87 Identities=20% Similarity=0.376 Sum_probs=71.0
Q ss_pred ccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC------
Q 040301 436 FNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD------ 503 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------ 503 (524)
|...+.||+|+||.||+|... +++.+|||.+.... ....+++.+|++++++++||||+++++++...+
T Consensus 1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 80 (273)
T cd05074 1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP 80 (273)
T ss_pred CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence 556788999999999999852 36789999986542 344667899999999999999999999886542
Q ss_pred cceEEEcccCCCCHHHHHH
Q 040301 504 FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~ 522 (524)
..++++||+++|+|.+++.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~ 99 (273)
T cd05074 81 IPMVILPFMKHGDLHTFLL 99 (273)
T ss_pred ceEEEEecCCCCcHHHHHH
Confidence 2478999999999988763
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.1e-09 Score=100.10 Aligned_cols=87 Identities=18% Similarity=0.267 Sum_probs=73.7
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.|+..+.+|+|+||.||+|.. .+|+.+|+|.++... ......+.+|++++++++||||+++++++.+....++|+||
T Consensus 1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 80 (284)
T cd07839 1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY 80 (284)
T ss_pred CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence 367778999999999999997 468899999996532 22235677899999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
++ |+|.++++
T Consensus 81 ~~-~~l~~~~~ 90 (284)
T cd07839 81 CD-QDLKKYFD 90 (284)
T ss_pred CC-CCHHHHHH
Confidence 97 58888775
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.5e-10 Score=112.08 Aligned_cols=90 Identities=22% Similarity=0.301 Sum_probs=79.2
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..++|+....+|+|.||.||+++. ..+...|+|.++.....+.+-..+|+-+++.++|||||.++|.+...+..|+.||
T Consensus 13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicME 92 (829)
T KOG0576|consen 13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICME 92 (829)
T ss_pred CccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEE
Confidence 456899999999999999999996 5688899999987655455666789999999999999999999999999999999
Q ss_pred ccCCCCHHHHH
Q 040301 511 RLLNISITIIR 521 (524)
Q Consensus 511 ~~~~gsL~~~l 521 (524)
||.+|+|.+..
T Consensus 93 ycgggslQdiy 103 (829)
T KOG0576|consen 93 YCGGGSLQDIY 103 (829)
T ss_pred ecCCCccccee
Confidence 99999998753
|
|
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-08 Score=97.34 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=74.2
Q ss_pred ccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--CcceEEEc
Q 040301 436 FNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKALMWG 510 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~lv~e 510 (524)
|+..+.+|+|+||.||+|... +++.+|+|.+.... ....+.+.+|+++++.++|||++++++++... +..++|+|
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e 80 (287)
T cd07840 1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE 80 (287)
T ss_pred CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence 566788999999999999974 57889999997653 33456788999999999999999999999988 88999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++ +|.+++.+
T Consensus 81 ~~~~-~l~~~~~~ 92 (287)
T cd07840 81 YMDH-DLTGLLDS 92 (287)
T ss_pred cccc-cHHHHHhc
Confidence 9984 88888753
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=100.63 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=73.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----- 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 503 (524)
..++|+..+.||+|+||.||++.. .++..||+|.+.... ......+.+|+.+++.++||||+++++++...+
T Consensus 19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 98 (359)
T cd07876 19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF 98 (359)
T ss_pred hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence 446799999999999999999996 468899999996432 334567889999999999999999999987543
Q ss_pred -cceEEEcccCCCCHHHHH
Q 040301 504 -FKALMWGRLLNISITIIR 521 (524)
Q Consensus 504 -~~~lv~e~~~~gsL~~~l 521 (524)
..|+||||+++ ++.+.+
T Consensus 99 ~~~~lv~e~~~~-~l~~~~ 116 (359)
T cd07876 99 QDVYLVMELMDA-NLCQVI 116 (359)
T ss_pred ceeEEEEeCCCc-CHHHHH
Confidence 46999999985 566554
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.3e-09 Score=105.10 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=68.2
Q ss_pred hhccccccCcccCCCCceEEEEEe-----------------CCCCEEEEEEeeccchHHHHHH--------------HHH
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-----------------SDWTNVAIKIFNLQLERAFRSF--------------DSE 480 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~--------------~~E 480 (524)
..++|+..++||+|+||.||+|.. ..++.||||++........++| ..|
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE 222 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE 222 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence 467899999999999999999963 2346799999865432223333 346
Q ss_pred HHHHhcCCCCCc-----cceeEEEEc--------CCcceEEEcccCCCCHHHHHH
Q 040301 481 CEVLRNVCHRNL-----IKILSSCSN--------PDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 481 i~~l~~l~H~ni-----v~l~~~~~~--------~~~~~lv~e~~~~gsL~~~l~ 522 (524)
+.++.+++|.++ +++++||.. .+..|+||||+++|+|.++|+
T Consensus 223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~ 277 (507)
T PLN03224 223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALD 277 (507)
T ss_pred HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHh
Confidence 667777766654 677888753 356899999999999999986
|
|
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-08 Score=100.69 Aligned_cols=93 Identities=18% Similarity=0.254 Sum_probs=75.7
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC---
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--- 502 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--- 502 (524)
.....+.|+..+.||+|+||.||+|.. .+++.||||.+.... ....+.+.+|++++++++||||+++++++...
T Consensus 10 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 89 (343)
T cd07878 10 VWEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSI 89 (343)
T ss_pred HhhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccc
Confidence 344567899999999999999999996 567889999996533 23345678999999999999999999988643
Q ss_pred ---CcceEEEcccCCCCHHHHHH
Q 040301 503 ---DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 503 ---~~~~lv~e~~~~gsL~~~l~ 522 (524)
...|+++|++ +++|.++++
T Consensus 90 ~~~~~~~~~~~~~-~~~l~~~~~ 111 (343)
T cd07878 90 ENFNEVYLVTNLM-GADLNNIVK 111 (343)
T ss_pred cccCcEEEEeecC-CCCHHHHHh
Confidence 3468999988 689988775
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=91.72 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=77.6
Q ss_pred ccccCcccCCCCceEEEEEeCC-CCEEEEEEeeccchH-HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 436 FNECNLLGTGSFGSVYKGTISD-WTNVAIKIFNLQLER-AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~~~~~~~~-~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
|...+.+|+|++|.||++...+ ++.+|+|.+...... ..+.+.+|++.+++++|+|++++++++...+..++++||++
T Consensus 1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~ 80 (225)
T smart00221 1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE 80 (225)
T ss_pred CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence 4566789999999999999754 788999999765544 56789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+++|.+++..
T Consensus 81 ~~~L~~~~~~ 90 (225)
T smart00221 81 GGDLFDYLRK 90 (225)
T ss_pred CCCHHHHHHh
Confidence 9999999854
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-08 Score=99.43 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=72.4
Q ss_pred cccc-ccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHH--------------HHHHHHHHHHHhcCCCCCccceeE
Q 040301 434 DEFN-ECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERA--------------FRSFDSECEVLRNVCHRNLIKILS 497 (524)
Q Consensus 434 ~~~~-~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~--------------~~~~~~Ei~~l~~l~H~niv~l~~ 497 (524)
+.|. ..+.||+|+||+||+|.. .+++.||+|.+....... ...+.+|++++++++||||+++++
T Consensus 8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~ 87 (335)
T PTZ00024 8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD 87 (335)
T ss_pred cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence 3454 456799999999999996 468899999986432111 124779999999999999999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..++..++||||++ |+|.++++.
T Consensus 88 ~~~~~~~~~lv~e~~~-~~l~~~l~~ 112 (335)
T PTZ00024 88 VYVEGDFINLVMDIMA-SDLKKVVDR 112 (335)
T ss_pred EEecCCcEEEEEeccc-cCHHHHHHh
Confidence 9999999999999997 699988753
|
|
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-09 Score=99.60 Aligned_cols=88 Identities=24% Similarity=0.281 Sum_probs=73.8
Q ss_pred ccccccCcccCCCCceEEEEEe---CCCC--EEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc-CCcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI---SDWT--NVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN-PDFK 505 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~---~~~~--~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~~~~ 505 (524)
..|+....||+|.||.||+|.- ++.+ .+|+|+++... .+......+||..+++++|||++.+..++.+ +..+
T Consensus 24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v 103 (438)
T KOG0666|consen 24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKV 103 (438)
T ss_pred HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceE
Confidence 4688889999999999999974 2223 69999997654 3345667899999999999999999999988 7789
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++++||.|. +|.+.|+
T Consensus 104 ~l~fdYAEh-DL~~II~ 119 (438)
T KOG0666|consen 104 WLLFDYAEH-DLWHIIK 119 (438)
T ss_pred EEEehhhhh-hHHHHHH
Confidence 999999996 8888875
|
|
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=108.07 Aligned_cols=96 Identities=20% Similarity=0.337 Sum_probs=80.9
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe----CC----CCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeE
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI----SD----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILS 497 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~----~~----~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~ 497 (524)
.++...++....+.+|+|.||+|++|.. .. ...||||.++... ..+.+.+..|+++|+.+ .|+||+.++|
T Consensus 290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG 369 (609)
T KOG0200|consen 290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG 369 (609)
T ss_pred ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence 4555555666677999999999999984 11 3469999997654 45678899999999999 5999999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+|.+.++.++|+||++.|+|.+|+++
T Consensus 370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr~ 395 (609)
T KOG0200|consen 370 ACTQDGPLYVIVEYAEHGDLLEFLRK 395 (609)
T ss_pred eeccCCceEEEEEeccCCcHHHHHHh
Confidence 99999999999999999999999986
|
|
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=97.46 Aligned_cols=88 Identities=19% Similarity=0.264 Sum_probs=72.9
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCc-----
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDF----- 504 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~----- 504 (524)
++|+..+.+|+|+||.||+|.. .+++.||+|.+.... ......+.+|+.+++.+. ||||+++++++...+.
T Consensus 1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~ 80 (295)
T cd07837 1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS 80 (295)
T ss_pred CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence 3588889999999999999996 468899999886533 223457889999999995 6999999999987665
Q ss_pred ceEEEcccCCCCHHHHHH
Q 040301 505 KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~ 522 (524)
.|+||||+++ +|.+++.
T Consensus 81 ~~lv~e~~~~-~l~~~~~ 97 (295)
T cd07837 81 LYLVFEYLDS-DLKKFMD 97 (295)
T ss_pred EEEEeeccCc-CHHHHHH
Confidence 8999999985 8988874
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-09 Score=97.56 Aligned_cols=208 Identities=18% Similarity=0.169 Sum_probs=125.9
Q ss_pred CCCCEEEccCCCCCCCCC-hhHhcCcccccEEEeccCcccc--cCCccccCCCCCCeEEcccCcCcccCCccccCCCCCC
Q 040301 76 RHLKALSLGSNPLGGILP-PVIGNFSASFQNFYAFNCKLKG--NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLR 152 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 152 (524)
.-++.|.+.++.|..... ..|+...+.+++++|.+|.++. .+...+.++|+|+.|+++.|++...+...-..+.+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345556666666654422 3444444577788888888764 4555667888999999999888744332224566888
Q ss_pred eEecccCcccc-cCCccccCCCCCCEEEccCCccccc--CCcccc-CCCCCCEEEccCCcCCC--ccChhccCCCCCCEE
Q 040301 153 GLSLKYNNLEG-SIPYDLCHLKLMYGIRLTGNKLSGH--IPPCLA-SLTSLRELHLGSNKLTS--SIPSSLWSLEYILMI 226 (524)
Q Consensus 153 ~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~-~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L 226 (524)
.|.|.+..+.= .....+..+|.++.|.++.|.+.-. ...... -.+.++.|++..|...- ..-.....+|++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 88888887752 2334566778888888888854311 111111 12345555555554320 011122335677777
Q ss_pred EcCCCcCccc-CCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEEEccCCcccCC
Q 040301 227 NLSSNSLNDS-LPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQGP 283 (524)
Q Consensus 227 ~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~L~~N~l~~~ 283 (524)
.+..|.+... -...+..++.+..|+|+.|++.+.. +.+.+++.|..|.+++|++.+.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 7777766532 1233455667777788888876554 5677778888888888877643
|
|
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-08 Score=97.75 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=74.5
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--HHHHHHHHHHHHHhcCCCCCccceeEEEEcC--Ccce
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--RAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKA 506 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~ 506 (524)
..++|+..+.||+|+||.||+|.. .+|+.||+|.+..... .....+.+|+.++++++|+||+++++++... +..+
T Consensus 5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 84 (309)
T cd07845 5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIF 84 (309)
T ss_pred cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEE
Confidence 456799999999999999999996 4688999999864331 1233567899999999999999999998765 5689
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||++ ++|.+++.+
T Consensus 85 lv~e~~~-~~l~~~l~~ 100 (309)
T cd07845 85 LVMEYCE-QDLASLLDN 100 (309)
T ss_pred EEEecCC-CCHHHHHHh
Confidence 9999997 488888753
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-08 Score=93.29 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=67.4
Q ss_pred CcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHH-hcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVL-RNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l-~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.+|+|+||.||+|.. .+++.||+|.+.... ......+..|..++ ...+|+|++++++++..++..++|+||+++
T Consensus 2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~ 81 (260)
T cd05611 2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG 81 (260)
T ss_pred ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence 4689999999999996 468899999986543 12223445565544 455899999999999999999999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 82 ~~L~~~l~~ 90 (260)
T cd05611 82 GDCASLIKT 90 (260)
T ss_pred CCHHHHHHH
Confidence 999999864
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=98.82 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=79.5
Q ss_pred chhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 425 SYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 425 ~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
...++...+++|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+.++++++||||+++++++..
T Consensus 8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~ 87 (345)
T cd07877 8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP 87 (345)
T ss_pred HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence 4567777889999999999999999999985 578899999996532 2335678899999999999999999998865
Q ss_pred C------CcceEEEcccCCCCHHHHHH
Q 040301 502 P------DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 502 ~------~~~~lv~e~~~~gsL~~~l~ 522 (524)
. ...++++|++ +++|.++++
T Consensus 88 ~~~~~~~~~~~lv~~~~-~~~L~~~~~ 113 (345)
T cd07877 88 ARSLEEFNDVYLVTHLM-GADLNNIVK 113 (345)
T ss_pred cccccccccEEEEehhc-ccCHHHHHh
Confidence 3 3468888877 789988764
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.1e-08 Score=95.19 Aligned_cols=86 Identities=23% Similarity=0.235 Sum_probs=72.6
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
|...+.+|+|+||.||+|.. .+++.+|+|.+.... ....+.+.+|+++++.++|||++++++++.+.+..|+||||
T Consensus 23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 102 (313)
T cd06633 23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY 102 (313)
T ss_pred hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence 55567899999999999996 468889999986432 23446788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+. |++.+++.
T Consensus 103 ~~-~~l~~~l~ 112 (313)
T cd06633 103 CL-GSASDLLE 112 (313)
T ss_pred CC-CCHHHHHH
Confidence 96 57877764
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-08 Score=94.07 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=71.8
Q ss_pred ccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 442 LGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 442 ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
+|+|+||.||++... +++.+|+|.+.... ......+..|+++++.++||||+++++.+..++..++||||+++++|
T Consensus 1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L 80 (250)
T cd05123 1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL 80 (250)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence 689999999999974 58899999987543 22456788999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 040301 518 TIIRRH 523 (524)
Q Consensus 518 ~~~l~~ 523 (524)
.+++++
T Consensus 81 ~~~l~~ 86 (250)
T cd05123 81 FSHLSK 86 (250)
T ss_pred HHHHHh
Confidence 999864
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-08 Score=97.25 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=72.7
Q ss_pred ccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch-HHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEEccc
Q 040301 436 FNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
|...+.||+|++|.||+|... +++.+|+|++..... .......+|+..+++++ ||||+++++++..++..++||||+
T Consensus 1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~ 80 (283)
T cd07830 1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM 80 (283)
T ss_pred CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence 566789999999999999974 578899999865432 22334567999999999 999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
+|+|.+++++
T Consensus 81 -~~~l~~~~~~ 90 (283)
T cd07830 81 -EGNLYQLMKD 90 (283)
T ss_pred -CCCHHHHHHh
Confidence 7899988753
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-09 Score=108.70 Aligned_cols=89 Identities=22% Similarity=0.255 Sum_probs=76.5
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
+.|.+...+|.|+||.||+|.-+ .+-.-|.|.+........++|.-||++|..++||+||++++.|..++.+||+.|||
T Consensus 32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC 111 (1187)
T KOG0579|consen 32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFC 111 (1187)
T ss_pred HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeec
Confidence 44566778999999999999964 34456788887766677889999999999999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
.||.....|-
T Consensus 112 ~GGAVDaiml 121 (1187)
T KOG0579|consen 112 GGGAVDAIML 121 (1187)
T ss_pred CCchHhHHHH
Confidence 9999887663
|
|
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-09 Score=98.14 Aligned_cols=90 Identities=21% Similarity=0.200 Sum_probs=77.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+++|+|.||+|..++- .+++.||+|++++.. +.....-.-|-++|+..+||.+..+...|++.+.+|.|
T Consensus 167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV 246 (516)
T KOG0690|consen 167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV 246 (516)
T ss_pred cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence 46788899999999999999995 578999999997653 22334456788999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||..||.|+-+|.
T Consensus 247 MeyanGGeLf~HLs 260 (516)
T KOG0690|consen 247 MEYANGGELFFHLS 260 (516)
T ss_pred EEEccCceEeeehh
Confidence 99999999987764
|
|
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-08 Score=102.12 Aligned_cols=87 Identities=23% Similarity=0.321 Sum_probs=74.8
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-C-----CCccceeEEEEcCCcceE
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-H-----RNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H-----~niv~l~~~~~~~~~~~l 507 (524)
.|++.+.||+|.||+|.+|.. .+++.||||+++.... -..+-..|+.+|..++ | -|+|++++||...+..||
T Consensus 187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~-f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci 265 (586)
T KOG0667|consen 187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR-FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI 265 (586)
T ss_pred EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH-HHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence 789999999999999999996 5789999999976543 3345567999999886 3 389999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|+|.++. +|.++||.
T Consensus 266 VfELL~~-NLYellK~ 280 (586)
T KOG0667|consen 266 VFELLST-NLYELLKN 280 (586)
T ss_pred eehhhhh-hHHHHHHh
Confidence 9998875 99999974
|
|
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-08 Score=96.51 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=71.0
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-----hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-----ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.|...+.||+|+||.||++... .+..+++|.++... .....++.+|+.++++++||||+++++++.+.+..++|
T Consensus 1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 80 (260)
T cd08222 1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII 80 (260)
T ss_pred CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence 3777889999999999999863 34445666554311 22344577899999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||+++++|.++++
T Consensus 81 ~e~~~~~~l~~~~~ 94 (260)
T cd08222 81 TEYCEGRDLDCKLE 94 (260)
T ss_pred EEeCCCCCHHHHHH
Confidence 99999999998875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-08 Score=94.56 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=70.4
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCC-CCCccceeEEEEcC--CcceEEEc
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVC-HRNLIKILSSCSNP--DFKALMWG 510 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~--~~~~lv~e 510 (524)
|...+.+|+|+||.||+|.. .+++.+|+|.+.... ........+|+.++.++. |+||+++++++.++ +..++|||
T Consensus 1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e 80 (282)
T cd07831 1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE 80 (282)
T ss_pred CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence 55678899999999999996 468899999986532 222234557899998885 99999999999987 88999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|++ |++.++++.
T Consensus 81 ~~~-~~l~~~l~~ 92 (282)
T cd07831 81 LMD-MNLYELIKG 92 (282)
T ss_pred cCC-ccHHHHHHh
Confidence 997 588888753
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-09 Score=115.59 Aligned_cols=93 Identities=22% Similarity=0.335 Sum_probs=80.3
Q ss_pred hhhccccccCcccCCCCceEEEEE-eCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..+-.++....||.|.||.||.|. ..+|...|||.+.... ........+|+.++..++|||+|++||+-...+..+|
T Consensus 1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~I 1311 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYI 1311 (1509)
T ss_pred cceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHH
Confidence 445567788999999999999999 4678999999886433 3345667899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
.||||++|+|.+.+++
T Consensus 1312 FMEyC~~GsLa~ll~~ 1327 (1509)
T KOG4645|consen 1312 FMEYCEGGSLASLLEH 1327 (1509)
T ss_pred HHHHhccCcHHHHHHh
Confidence 9999999999998864
|
|
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.1e-08 Score=92.86 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=69.7
Q ss_pred hhhhhhhccccccCcc--cCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhc-CCCCCccceeEEEEcC
Q 040301 427 LDIQRATDEFNECNLL--GTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRN-VCHRNLIKILSSCSNP 502 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~i--g~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~-l~H~niv~l~~~~~~~ 502 (524)
.+.....++|+..+.+ |+|+||.||++.. .++..+|+|.+........ |+..... .+||||+++++++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~~~ 81 (267)
T PHA03390 7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVTTL 81 (267)
T ss_pred HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEecC
Confidence 3444445677777776 9999999999996 4678899999865432111 2222221 2799999999999999
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..++||||+++|+|.+++++
T Consensus 82 ~~~~iv~e~~~~~~L~~~l~~ 102 (267)
T PHA03390 82 KGHVLIMDYIKDGDLFDLLKK 102 (267)
T ss_pred CeeEEEEEcCCCCcHHHHHHh
Confidence 999999999999999999864
|
|
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-08 Score=93.11 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=65.0
Q ss_pred cccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHH---hcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 441 LLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVL---RNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l---~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
.||+|+||.||++.. .+++.+|+|.+.... ......+.+|..++ ...+||+|+.+++++..++..++||||++
T Consensus 1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~ 80 (279)
T cd05633 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN 80 (279)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence 479999999999996 468899999986532 12223344554433 34579999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+|+|.+++++
T Consensus 81 ~~~L~~~i~~ 90 (279)
T cd05633 81 GGDLHYHLSQ 90 (279)
T ss_pred CCCHHHHHHh
Confidence 9999988753
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-08 Score=98.33 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=73.5
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----- 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 503 (524)
..++|+..+.||+|+||.||++.. ..++.+|||.+.... ....+.+.+|+.+++.++||||+++++++....
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 94 (355)
T cd07874 15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF 94 (355)
T ss_pred hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence 457899999999999999999986 467889999996532 334567889999999999999999999986543
Q ss_pred -cceEEEcccCCCCHHHHHH
Q 040301 504 -FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 -~~~lv~e~~~~gsL~~~l~ 522 (524)
..++||||+++ ++.++++
T Consensus 95 ~~~~lv~e~~~~-~l~~~~~ 113 (355)
T cd07874 95 QDVYLVMELMDA-NLCQVIQ 113 (355)
T ss_pred ceeEEEhhhhcc-cHHHHHh
Confidence 46999999975 6766653
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-08 Score=101.38 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=71.8
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..+|...+.||+|+||.||+|... .++.||||.... ..+.+|++++++++|+|||++++++..++..++||||
T Consensus 168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~ 241 (461)
T PHA03211 168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPK 241 (461)
T ss_pred cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEc
Confidence 346888999999999999999974 578899996432 3356899999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+. |+|.+++.+
T Consensus 242 ~~-~~L~~~l~~ 252 (461)
T PHA03211 242 YR-SDLYTYLGA 252 (461)
T ss_pred cC-CCHHHHHHh
Confidence 95 799888753
|
|
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=95.46 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=72.7
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc----
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF---- 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~---- 504 (524)
..++|+..+.+|+|+||.||+|.. .+++.||||.+.... ......+.+|++++++++||||++++++|...+.
T Consensus 10 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 89 (310)
T cd07865 10 EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNR 89 (310)
T ss_pred hhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence 345688999999999999999996 468899999986432 2223456789999999999999999999876543
Q ss_pred ----ceEEEcccCCCCHHHHHH
Q 040301 505 ----KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 ----~~lv~e~~~~gsL~~~l~ 522 (524)
.++||||+. +++.++++
T Consensus 90 ~~~~~~lv~e~~~-~~l~~~l~ 110 (310)
T cd07865 90 YKGSFYLVFEFCE-HDLAGLLS 110 (310)
T ss_pred CCceEEEEEcCCC-cCHHHHHH
Confidence 499999997 48887764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.1e-08 Score=98.08 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=73.5
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----- 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 503 (524)
..++|+..+.||+|+||.||++.. ..++.||||++.... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~ 101 (364)
T cd07875 22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 101 (364)
T ss_pred hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence 456799999999999999999996 467889999996532 334567889999999999999999999886543
Q ss_pred -cceEEEcccCCCCHHHHHH
Q 040301 504 -FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 -~~~lv~e~~~~gsL~~~l~ 522 (524)
..|+||||+++ ++.++++
T Consensus 102 ~~~~lv~e~~~~-~l~~~~~ 120 (364)
T cd07875 102 QDVYIVMELMDA-NLCQVIQ 120 (364)
T ss_pred CeEEEEEeCCCC-CHHHHHH
Confidence 47999999975 7776654
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-08 Score=96.95 Aligned_cols=83 Identities=16% Similarity=0.050 Sum_probs=67.1
Q ss_pred CcccCCCCceEEEEEeCCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
+..|.|+++.+|++.. +++.||+|++... .....+.+.+|++++++++||||+++++++.+.+..+++|||+++|+|
T Consensus 8 ~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l 86 (314)
T cd08216 8 KCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSC 86 (314)
T ss_pred HhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCH
Confidence 3444445545555444 6889999999754 234557899999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 040301 518 TIIRRH 523 (524)
Q Consensus 518 ~~~l~~ 523 (524)
.+++++
T Consensus 87 ~~~l~~ 92 (314)
T cd08216 87 EDLLKT 92 (314)
T ss_pred HHHHHH
Confidence 999864
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-08 Score=97.73 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=74.6
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeecc--chHHHHHHHHHHHHHhcC-CCCCccceeEEEEcC--Ccc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQ--LERAFRSFDSECEVLRNV-CHRNLIKILSSCSNP--DFK 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~--~~~ 505 (524)
..++|+..+.+|+|+||.||+|... +++.+|+|++... .......+.+|+.+++++ +||||++++++|... ...
T Consensus 5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~ 84 (337)
T cd07852 5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI 84 (337)
T ss_pred hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence 3467888999999999999999964 6788999988542 223445677899999999 999999999998654 368
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||++ ++|.+++++
T Consensus 85 ~lv~e~~~-~~L~~~~~~ 101 (337)
T cd07852 85 YLVFEYME-TDLHAVIRA 101 (337)
T ss_pred EEEecccc-cCHHHHHhc
Confidence 99999998 599988764
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-08 Score=98.82 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=74.5
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC----------
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP---------- 502 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~---------- 502 (524)
..|+..+.||.|+||.||+|.. .++..||+|.+........+.+.+|++++++++||||+++++++...
T Consensus 5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 84 (342)
T cd07854 5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS 84 (342)
T ss_pred cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence 5788899999999999999996 56889999999765555567788999999999999999999876543
Q ss_pred ----CcceEEEcccCCCCHHHHHH
Q 040301 503 ----DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 503 ----~~~~lv~e~~~~gsL~~~l~ 522 (524)
...++||||++ ++|.++++
T Consensus 85 ~~~~~~~~lv~e~~~-~~L~~~~~ 107 (342)
T cd07854 85 LTELNSVYIVQEYME-TDLANVLE 107 (342)
T ss_pred ccccceEEEEeeccc-ccHHHHHH
Confidence 35789999997 58988774
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-08 Score=94.81 Aligned_cols=88 Identities=23% Similarity=0.249 Sum_probs=74.1
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc---chHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ---LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
..|+..+.+|+|+||.||+|.. .++..+|+|.+... .....+++.+|+++++.++|+|++++.+++..+...++||
T Consensus 15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 94 (308)
T cd06634 15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 94 (308)
T ss_pred HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEE
Confidence 3477778999999999999996 46788999998642 2334567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+. |++.+++.
T Consensus 95 e~~~-~~l~~~~~ 106 (308)
T cd06634 95 EYCL-GSASDLLE 106 (308)
T ss_pred EccC-CCHHHHHH
Confidence 9997 68877663
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-10 Score=114.72 Aligned_cols=199 Identities=25% Similarity=0.231 Sum_probs=133.9
Q ss_pred CCCCCeEEcccCcCcccC-CccccCCCCCCeEecccCcccccCCccccCC-CCCCEEEccCCccc---ccCCc---cccC
Q 040301 124 LRGLTLLSLFNNDLNGTI-SPTMGRLKQLRGLSLKYNNLEGSIPYDLCHL-KLMYGIRLTGNKLS---GHIPP---CLAS 195 (524)
Q Consensus 124 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~---~~~~~---~~~~ 195 (524)
+++++.|.+-...-.+.. |-.+..+.+|+.|-|.++++... ..+..+ ..|+.|-..+ .+. ..+.. .+.+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhcccccc
Confidence 344445444332222222 55667788999999999988731 111111 1233333322 111 00000 0111
Q ss_pred ---CCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCC
Q 040301 196 ---LTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLE 271 (524)
Q Consensus 196 ---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~ 271 (524)
...|...+++.|.+. ....++.-++.|+.|+|++|++... +.+..++.|++|||++|.+...+ ....++. |+
T Consensus 160 s~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred chhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-he
Confidence 235777888999987 6778888899999999999999753 37888999999999999998777 3344444 99
Q ss_pred EEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCC-cccccCCCCCCeEEccCCcCccc
Q 040301 272 TLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI-PKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 272 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
.|.+++|.++.. ..+.++.+|+.||+++|-+.+.. -..+..+..|+.|++.+||+.|.
T Consensus 236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999999998843 45788999999999999987432 13445677889999999999875
|
|
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-08 Score=98.15 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=71.7
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
...+|+..+.||+|+||.||+|... +++.||+|..... ....|+.++++++||||+++++++..++..++|+|
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 137 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLP 137 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEE
Confidence 3457999999999999999999974 5678999975432 23468999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+. |+|.+++++
T Consensus 138 ~~~-~~l~~~l~~ 149 (357)
T PHA03209 138 HYS-SDLYTYLTK 149 (357)
T ss_pred ccC-CcHHHHHHh
Confidence 996 689888753
|
|
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-08 Score=95.59 Aligned_cols=87 Identities=22% Similarity=0.278 Sum_probs=74.8
Q ss_pred ccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 436 FNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
|+....+|+|+||.||+|+.. +++.+|+|.+.... ....+.+.+|+.++++++|+|++++++++...+..++||||+
T Consensus 1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~ 80 (282)
T cd07829 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC 80 (282)
T ss_pred CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence 456678999999999999974 58899999997643 333567789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
+ ++|.+++++
T Consensus 81 ~-~~l~~~i~~ 90 (282)
T cd07829 81 D-MDLKKYLDK 90 (282)
T ss_pred C-cCHHHHHHh
Confidence 8 599998864
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.6e-08 Score=94.60 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=65.7
Q ss_pred cCcccCCCCceEEEEEeC---CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcceEEEcccC
Q 040301 439 CNLLGTGSFGSVYKGTIS---DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFKALMWGRLL 513 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~~lv~e~~~ 513 (524)
...||+|+||.||+|... +++.+|+|.+.... ....+.+|++++++++||||+++++++.. +...++||||+.
T Consensus 6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~ 83 (317)
T cd07868 6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE 83 (317)
T ss_pred ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence 358999999999999853 45789999986543 23456789999999999999999999865 456899999997
Q ss_pred CCCHHHHHH
Q 040301 514 NISITIIRR 522 (524)
Q Consensus 514 ~gsL~~~l~ 522 (524)
++|.++++
T Consensus 84 -~~l~~~~~ 91 (317)
T cd07868 84 -HDLWHIIK 91 (317)
T ss_pred -CCHHHHHH
Confidence 58887764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-08 Score=94.31 Aligned_cols=88 Identities=19% Similarity=0.345 Sum_probs=68.4
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC---CCCCccceeEEEEcC-----C
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV---CHRNLIKILSSCSNP-----D 503 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~~~-----~ 503 (524)
.|+..+.||+|+||.||+|.. .+++.||+|.++... ......+.+|+++++++ +||||+++++++... .
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~ 80 (288)
T cd07863 1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET 80 (288)
T ss_pred CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence 377888999999999999996 468899999986532 12233456777777655 799999999998652 4
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+. ++|.+++++
T Consensus 81 ~~~lv~e~~~-~~l~~~~~~ 99 (288)
T cd07863 81 KVTLVFEHVD-QDLRTYLDK 99 (288)
T ss_pred eEEEEEcccc-cCHHHHHHh
Confidence 5799999998 589888754
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=98.69 E-value=8e-08 Score=92.10 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=64.8
Q ss_pred cccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHH---HHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 441 LLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECE---VLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~---~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
.||+|+||.||++.. .+++.||+|.+.... ......+..|.. .++...||+|+++++++..++..++||||++
T Consensus 1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~ 80 (278)
T cd05606 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN 80 (278)
T ss_pred CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence 479999999999986 468899999986532 122223444443 4455689999999999999999999999999
Q ss_pred CCCHHHHHH
Q 040301 514 NISITIIRR 522 (524)
Q Consensus 514 ~gsL~~~l~ 522 (524)
+|+|.++++
T Consensus 81 g~~L~~~l~ 89 (278)
T cd05606 81 GGDLHYHLS 89 (278)
T ss_pred CCcHHHHHH
Confidence 999998875
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-08 Score=97.10 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=73.8
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-----Cc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-----DF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~~ 504 (524)
...|...+.+|+|+||.||+|.. .+++.||||.+.... ......+.+|+.+++.++||||+++++++... ..
T Consensus 4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 83 (337)
T cd07858 4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND 83 (337)
T ss_pred ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence 45688899999999999999996 568899999986532 23345677899999999999999999988654 34
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++|+||+. ++|.+++++
T Consensus 84 ~~lv~e~~~-~~L~~~~~~ 101 (337)
T cd07858 84 VYIVYELMD-TDLHQIIRS 101 (337)
T ss_pred EEEEEeCCC-CCHHHHHhc
Confidence 799999996 689888753
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=98.68 E-value=8e-08 Score=95.55 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=74.1
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------ 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------ 502 (524)
..+.|+..+.||+|+||.||+|.. .+++.||+|.+... .......+.+|++++++++||||+++++++...
T Consensus 14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 93 (353)
T cd07850 14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF 93 (353)
T ss_pred hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence 456799999999999999999996 57889999998643 233456678899999999999999999998654
Q ss_pred CcceEEEcccCCCCHHHHHH
Q 040301 503 DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~ 522 (524)
...|+||||+. |+|.+++.
T Consensus 94 ~~~~lv~e~~~-~~l~~~~~ 112 (353)
T cd07850 94 QDVYLVMELMD-ANLCQVIQ 112 (353)
T ss_pred CcEEEEEeccC-CCHHHHHh
Confidence 34699999997 58888764
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-08 Score=97.80 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=73.9
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~ 505 (524)
.++|+..+.||+|+||.||+|.. .++..||+|++.... ....+.+.+|+.++++++||||+++++++.. ....
T Consensus 4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 83 (334)
T cd07855 4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV 83 (334)
T ss_pred hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence 36789999999999999999996 468899999986532 2345667789999999999999999998864 3468
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++||||+. |+|.++++
T Consensus 84 ~lv~e~~~-~~l~~~~~ 99 (334)
T cd07855 84 YVVMDLME-SDLHHIIH 99 (334)
T ss_pred EEEEehhh-hhHHHHhc
Confidence 99999996 68988874
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.1e-08 Score=92.93 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=71.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+....||+|+||.||++.. .+++.+|+|.+.... ......+.+|+.++.++. ||||+++++++..+...+++||
T Consensus 4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e 83 (288)
T cd06616 4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICME 83 (288)
T ss_pred HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEe
Confidence 3566678899999999999996 468899999987543 334567889999999996 9999999999999999999999
Q ss_pred ccCCCCHHHHH
Q 040301 511 RLLNISITIIR 521 (524)
Q Consensus 511 ~~~~gsL~~~l 521 (524)
|+.. ++.++.
T Consensus 84 ~~~~-~l~~l~ 93 (288)
T cd06616 84 LMDI-SLDKFY 93 (288)
T ss_pred cccC-CHHHHH
Confidence 9874 665543
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-08 Score=96.06 Aligned_cols=89 Identities=20% Similarity=0.246 Sum_probs=73.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----cc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-----FK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-----~~ 505 (524)
.++|+..+.+|+|+||.||+|.. .+++.||+|.+.... ......+.+|+.++++++||||+++++++.... ..
T Consensus 4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 83 (336)
T cd07849 4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV 83 (336)
T ss_pred ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence 46799999999999999999986 568899999986432 334567889999999999999999999876543 47
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++|+||++ +++.++++
T Consensus 84 ~lv~e~~~-~~l~~~~~ 99 (336)
T cd07849 84 YIVQELME-TDLYKLIK 99 (336)
T ss_pred EEEehhcc-cCHHHHHh
Confidence 99999997 48887764
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-08 Score=93.03 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=74.2
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
|+..+.||+|++|.||+|.. .+++.+|+|.+.... ......+.+|++++++++|+||+++++++..++..++|+||+
T Consensus 1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~ 80 (283)
T cd05118 1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM 80 (283)
T ss_pred CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence 55678899999999999996 468889999986543 234567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++ ++.+++++
T Consensus 81 ~~-~l~~~l~~ 90 (283)
T cd05118 81 DT-DLYKLIKD 90 (283)
T ss_pred CC-CHHHHHHh
Confidence 85 88887753
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.7e-08 Score=93.71 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=65.1
Q ss_pred CcccCCCCceEEEEEeC---CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTIS---DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~~lv~e~~~~ 514 (524)
..||+|+||.||+|... ++..+|+|.+.... ....+.+|++++++++||||+++++++.. +...++||||+++
T Consensus 7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~ 84 (317)
T cd07867 7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH 84 (317)
T ss_pred eEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence 57999999999999963 45679999986543 23457789999999999999999999854 4578999999874
Q ss_pred CCHHHHHH
Q 040301 515 ISITIIRR 522 (524)
Q Consensus 515 gsL~~~l~ 522 (524)
+|.++++
T Consensus 85 -~l~~~~~ 91 (317)
T cd07867 85 -DLWHIIK 91 (317)
T ss_pred -cHHHHHH
Confidence 7777764
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-08 Score=97.35 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=70.7
Q ss_pred ccccccCcccCCCCceEEEEEeC---CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS---DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..|...+.||+|+||.||+|... .+..||+|.+... +.+.+|++++++++|||||++++++......++|||
T Consensus 92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e 166 (392)
T PHA03207 92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMP 166 (392)
T ss_pred CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEeh
Confidence 46899999999999999999852 3567999988643 234579999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+. ++|.+++.
T Consensus 167 ~~~-~~l~~~l~ 177 (392)
T PHA03207 167 KYK-CDLFTYVD 177 (392)
T ss_pred hcC-CCHHHHHH
Confidence 996 68888874
|
|
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.3e-08 Score=92.53 Aligned_cols=90 Identities=11% Similarity=0.126 Sum_probs=73.4
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv 508 (524)
..++|+..+.+|+|+||.||+|... +++.||||.++... ......+.+|+.++.+.. ||||++++++|.++...|+|
T Consensus 13 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v 92 (296)
T cd06618 13 DLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFIC 92 (296)
T ss_pred CcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEE
Confidence 3456888899999999999999975 48899999997543 234456777888777774 99999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||++ +++.+++.
T Consensus 93 ~e~~~-~~l~~l~~ 105 (296)
T cd06618 93 MELMS-TCLDKLLK 105 (296)
T ss_pred eeccC-cCHHHHHH
Confidence 99986 47776654
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-10 Score=115.83 Aligned_cols=126 Identities=31% Similarity=0.337 Sum_probs=75.5
Q ss_pred CCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcC
Q 040301 150 QLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLS 229 (524)
Q Consensus 150 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 229 (524)
.|...+.++|.+. .+..++.-++.++.|+|+.|++... +.+..++.|++|||++|.++ .+|..-..-..|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 4556666666666 5555666666666777777766533 25666667777777777666 344322222336677777
Q ss_pred CCcCcccCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEEEccCCccc
Q 040301 230 SNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQ 281 (524)
Q Consensus 230 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~L~~N~l~ 281 (524)
+|.++. + ..+.++.+|+.||+++|-+.+.. ..+..+..|..|+|.+|++-
T Consensus 241 nN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 776653 2 23556666777777777666543 44555566666677776654
|
|
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.8e-08 Score=97.41 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=76.0
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc---
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF--- 504 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~--- 504 (524)
...++|+....||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.++++++||||+++.+++...+.
T Consensus 12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 91 (343)
T cd07851 12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED 91 (343)
T ss_pred cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence 3467899999999999999999997 467889999986432 2344667889999999999999999998876655
Q ss_pred ---ceEEEcccCCCCHHHHHHh
Q 040301 505 ---KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ---~~lv~e~~~~gsL~~~l~~ 523 (524)
.++|+||+ +++|.++++.
T Consensus 92 ~~~~~lv~e~~-~~~L~~~~~~ 112 (343)
T cd07851 92 FQDVYLVTHLM-GADLNNIVKC 112 (343)
T ss_pred cccEEEEEecC-CCCHHHHHhc
Confidence 89999998 5799988753
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.6e-08 Score=95.69 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=74.8
Q ss_pred cccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----cce
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-----FKA 506 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-----~~~ 506 (524)
+|+..+.||+|+||.||+|... ++..+|+|++.... ....+.+.+|+++++.++||||+++++++...+ ..|
T Consensus 1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~ 80 (330)
T cd07834 1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY 80 (330)
T ss_pred CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence 3778889999999999999964 58899999997543 334577899999999999999999999998875 789
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||++ ++|.+++++
T Consensus 81 lv~e~~~-~~l~~~l~~ 96 (330)
T cd07834 81 IVTELME-TDLHKVIKS 96 (330)
T ss_pred EEecchh-hhHHHHHhC
Confidence 9999998 588888754
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-08 Score=89.44 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=77.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--------hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcC
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--------ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNP 502 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~ 502 (524)
-..|...+.+|.|..+.|.++.. ++|..+|+|++.... ....++-.+|+.+|+++ .||+|+++.++|.++
T Consensus 16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~ 95 (411)
T KOG0599|consen 16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESD 95 (411)
T ss_pred HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCc
Confidence 34677888999999999998886 578899999996432 22345667999999987 799999999999999
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
..+++|+|.|+.|.|+|+|..
T Consensus 96 sF~FlVFdl~prGELFDyLts 116 (411)
T KOG0599|consen 96 AFVFLVFDLMPRGELFDYLTS 116 (411)
T ss_pred chhhhhhhhcccchHHHHhhh
Confidence 999999999999999999853
|
|
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=90.06 Aligned_cols=87 Identities=24% Similarity=0.382 Sum_probs=70.0
Q ss_pred ccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC---CCCCccceeEEEEcCCc-----
Q 040301 436 FNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV---CHRNLIKILSSCSNPDF----- 504 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~~~~~----- 504 (524)
|+..+.+|+|+||.||+|... +++.+|+|.+.... ......+.+|+.+++++ +||||+++++++...+.
T Consensus 1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~ 80 (287)
T cd07838 1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK 80 (287)
T ss_pred CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence 566788999999999999975 58899999996432 22344566788777655 69999999999998777
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.+++|||+. ++|.+++++
T Consensus 81 ~~l~~e~~~-~~l~~~l~~ 98 (287)
T cd07838 81 LTLVFEHVD-QDLATYLSK 98 (287)
T ss_pred eEEEehhcc-cCHHHHHHH
Confidence 999999997 589888754
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=93.03 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=71.8
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD------ 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------ 503 (524)
..+|.....||+|+||.||+|+. .+++.||+|++.... ......+.+|+.+++.++||||+++++++....
T Consensus 14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 93 (342)
T cd07879 14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ 93 (342)
T ss_pred ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence 46899999999999999999996 468899999986432 223456789999999999999999999987643
Q ss_pred cceEEEcccCCCCHHHHH
Q 040301 504 FKALMWGRLLNISITIIR 521 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l 521 (524)
..++|+||+.. ++.+++
T Consensus 94 ~~~lv~e~~~~-~l~~~~ 110 (342)
T cd07879 94 DFYLVMPYMQT-DLQKIM 110 (342)
T ss_pred eEEEEeccccc-CHHHHH
Confidence 35999999974 777654
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-07 Score=97.44 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=71.9
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC------CCccceeEEE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH------RNLIKILSSC 499 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H------~niv~l~~~~ 499 (524)
+++....++|+..+.||+|+||.||+|.. .+++.||||+++... ...+++..|+.++.+++| .+++++++++
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~ 200 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF 200 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence 34445678899999999999999999996 467889999996432 223445667777766654 4588999988
Q ss_pred EcC-CcceEEEcccCCCCHHHHHHh
Q 040301 500 SNP-DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~-~~~~lv~e~~~~gsL~~~l~~ 523 (524)
..+ ...|+|||++ +++|.+++.+
T Consensus 201 ~~~~~~~~iv~~~~-g~~l~~~l~~ 224 (467)
T PTZ00284 201 QNETGHMCIVMPKY-GPCLLDWIMK 224 (467)
T ss_pred EcCCceEEEEEecc-CCCHHHHHHH
Confidence 765 4689999988 6789988753
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.6e-07 Score=82.98 Aligned_cols=82 Identities=24% Similarity=0.340 Sum_probs=72.3
Q ss_pred ccCCCCceEEEEEeC-CCCEEEEEEeeccchH-HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCHHH
Q 040301 442 LGTGSFGSVYKGTIS-DWTNVAIKIFNLQLER-AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISITI 519 (524)
Q Consensus 442 ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~-~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~ 519 (524)
||+|.+|.||++... +++.+++|.+...... ..+.+.+|++.+++++|++|+++++++......++++||+.+++|.+
T Consensus 1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~ 80 (215)
T cd00180 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD 80 (215)
T ss_pred CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence 689999999999974 4889999999765432 45678999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 040301 520 IRRH 523 (524)
Q Consensus 520 ~l~~ 523 (524)
++.+
T Consensus 81 ~~~~ 84 (215)
T cd00180 81 LLKE 84 (215)
T ss_pred HHHh
Confidence 9864
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-08 Score=105.85 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=65.4
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.....+|+....+|+||||.||+++- -||+.||||+|+-.. ........+|++.+++++|||||+++..+.+...-.-
T Consensus 475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~ 554 (1351)
T KOG1035|consen 475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT 554 (1351)
T ss_pred hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence 34667889999999999999999994 489999999997653 3445678899999999999999999998877544443
Q ss_pred EEc
Q 040301 508 MWG 510 (524)
Q Consensus 508 v~e 510 (524)
++|
T Consensus 555 ~~e 557 (1351)
T KOG1035|consen 555 VLE 557 (1351)
T ss_pred ccc
Confidence 333
|
|
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=91.54 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=71.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--HHHHHHHHHHHHHhcCCCCCccceeEEEEcCC------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--RAFRSFDSECEVLRNVCHRNLIKILSSCSNPD------ 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------ 503 (524)
.++|+..+.||+|+||.||+|+. .+++.+|+|.+..... .....+.+|+++++.++||||+++++++....
T Consensus 7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 86 (311)
T cd07866 7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK 86 (311)
T ss_pred cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence 46899999999999999999996 4688899999865332 22345778999999999999999999875533
Q ss_pred --cceEEEcccCCCCHHHHHH
Q 040301 504 --FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 --~~~lv~e~~~~gsL~~~l~ 522 (524)
.+++|+||+.+ ++.+.+.
T Consensus 87 ~~~~~lv~~~~~~-~l~~~~~ 106 (311)
T cd07866 87 RGSVYMVTPYMDH-DLSGLLE 106 (311)
T ss_pred CceEEEEEecCCc-CHHHHHh
Confidence 46999999975 6766553
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-08 Score=89.27 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=71.2
Q ss_pred ccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHh-cCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 438 ECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLR-NVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 438 ~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~-~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
....||.|.||+|++... +.|+..|||++.... ....+++..|.+... .-+.||||++||++-.++..||-||.|.
T Consensus 68 dlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd- 146 (361)
T KOG1006|consen 68 DLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD- 146 (361)
T ss_pred HHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh-
Confidence 346899999999999986 578999999998655 356778999997654 4589999999999999999999999997
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
-|+..+.+.
T Consensus 147 ~SlDklYk~ 155 (361)
T KOG1006|consen 147 ISLDKLYKR 155 (361)
T ss_pred hhHHHHHHH
Confidence 488777654
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7e-08 Score=95.29 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=71.8
Q ss_pred ccccccCcccCCCCceEEEEEeCC-CCEEEEEEeeccch--------HHHHHHHHHHHHHhcCC---CCCccceeEEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISD-WTNVAIKIFNLQLE--------RAFRSFDSECEVLRNVC---HRNLIKILSSCSN 501 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~~~~~~~--------~~~~~~~~Ei~~l~~l~---H~niv~l~~~~~~ 501 (524)
.+|+....+|+|+||+|+.|.++. ...|++|.+.+... ......-.||.+|.+++ |+||++++.+|++
T Consensus 561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd 640 (772)
T KOG1152|consen 561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED 640 (772)
T ss_pred ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence 468889999999999999999854 45688999865431 11123457999999997 9999999999999
Q ss_pred CCcceEEEcc-cCCCCHHHHHH
Q 040301 502 PDFKALMWGR-LLNISITIIRR 522 (524)
Q Consensus 502 ~~~~~lv~e~-~~~gsL~~~l~ 522 (524)
++++||+||- =++-+|+++|.
T Consensus 641 dd~yyl~te~hg~gIDLFd~IE 662 (772)
T KOG1152|consen 641 DDYYYLETEVHGEGIDLFDFIE 662 (772)
T ss_pred CCeeEEEecCCCCCcchhhhhh
Confidence 9999999994 45678999885
|
|
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-07 Score=84.89 Aligned_cols=89 Identities=8% Similarity=0.053 Sum_probs=71.2
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHH---H------HHHHHHHHHhcCCCCCccceeEEEEcC
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAF---R------SFDSECEVLRNVCHRNLIKILSSCSNP 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~---~------~~~~Ei~~l~~l~H~niv~l~~~~~~~ 502 (524)
-...|...+.+|.|+||.||.+.. ++..+|+|.+.+...... + .+.+|+..+.++.||+|..+..++...
T Consensus 29 l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~ 107 (232)
T PRK10359 29 LSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA 107 (232)
T ss_pred hhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence 357799999999999999998765 566899999975432111 1 268999999999999999999986643
Q ss_pred --------CcceEEEcccCCCCHHHHH
Q 040301 503 --------DFKALMWGRLLNISITIIR 521 (524)
Q Consensus 503 --------~~~~lv~e~~~~gsL~~~l 521 (524)
...++||||++|.+|.++.
T Consensus 108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~ 134 (232)
T PRK10359 108 ERKTLRYAHTYIMLIEYIEGVELNDMP 134 (232)
T ss_pred ccccccccCCeEEEEEEECCccHHHhh
Confidence 3578999999999997763
|
|
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-07 Score=84.14 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=57.6
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeeccchH--H-------HHH-----------------HHHHHHHHhcCCCCCc
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER--A-------FRS-----------------FDSECEVLRNVCHRNL 492 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~--~-------~~~-----------------~~~Ei~~l~~l~H~ni 492 (524)
...||+|+||.||+|...+|+.||||.++..... . ... ..+|++.+.++.|+++
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v 81 (190)
T cd05147 2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI 81 (190)
T ss_pred CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3579999999999999878999999999653210 0 112 2359999999988877
Q ss_pred cceeEEEEcCCcceEEEcccCCCCHHHH
Q 040301 493 IKILSSCSNPDFKALMWGRLLNISITII 520 (524)
Q Consensus 493 v~l~~~~~~~~~~~lv~e~~~~gsL~~~ 520 (524)
.....+.. ...+|||||++++++...
T Consensus 82 ~~p~~~~~--~~~~iVmE~i~g~~l~~~ 107 (190)
T cd05147 82 PCPEPILL--KSHVLVMEFIGDDGWAAP 107 (190)
T ss_pred CCCcEEEe--cCCEEEEEEeCCCCCcch
Confidence 54443322 234899999998876543
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-08 Score=95.63 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=78.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
....|..-+++|+|+||.||.++. .+|+.||+|++.+.. .+.......|-.++.+++.+.||.+-.+|.+.+.+|+
T Consensus 183 t~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LCl 262 (591)
T KOG0986|consen 183 TKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCL 262 (591)
T ss_pred cccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEE
Confidence 345577788999999999999996 579999999996543 3445667899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
|+..|.||+|.-+|-
T Consensus 263 VLtlMNGGDLkfHiy 277 (591)
T KOG0986|consen 263 VLTLMNGGDLKFHIY 277 (591)
T ss_pred EEEeecCCceeEEee
Confidence 999999999986653
|
|
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.6e-08 Score=96.16 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=70.3
Q ss_pred cccCcccCCCCceEEEEEe-CCCCEEEEEE--eec--cchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc--ceEEE
Q 040301 437 NECNLLGTGSFGSVYKGTI-SDWTNVAIKI--FNL--QLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF--KALMW 509 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~-~~~~~vavK~--~~~--~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~--~~lv~ 509 (524)
.....+|+|.|-+||+|.. .+|..||=-. +.. ......+.|..|+++|+.++|||||++|.++.+... +-+|+
T Consensus 43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT 122 (632)
T KOG0584|consen 43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT 122 (632)
T ss_pred ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence 3456899999999999996 3566665211 211 124456899999999999999999999999987654 88999
Q ss_pred cccCCCCHHHHHHhC
Q 040301 510 GRLLNISITIIRRHL 524 (524)
Q Consensus 510 e~~~~gsL~~~l~~~ 524 (524)
|.|..|+|+.|++++
T Consensus 123 EL~TSGtLr~Y~kk~ 137 (632)
T KOG0584|consen 123 ELFTSGTLREYRKKH 137 (632)
T ss_pred ecccCCcHHHHHHHh
Confidence 999999999999863
|
|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-07 Score=92.67 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=78.1
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEee--ccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFN--LQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~--~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 509 (524)
-..|++.++||+||.+.||++.-.+.+.||+|++. ..+.+...-|.+|+..|.++ .|.+||++++|-..++++||||
T Consensus 360 g~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvm 439 (677)
T KOG0596|consen 360 GREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVM 439 (677)
T ss_pred cchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEe
Confidence 35699999999999999999998777888888774 34456678899999999999 5999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||=+ -+|..+|++
T Consensus 440 E~Gd-~DL~kiL~k 452 (677)
T KOG0596|consen 440 ECGD-IDLNKILKK 452 (677)
T ss_pred eccc-ccHHHHHHh
Confidence 9665 699999875
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-08 Score=85.92 Aligned_cols=88 Identities=22% Similarity=0.441 Sum_probs=74.4
Q ss_pred hhccccccCcccCCCCceEEEEE-eCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCC--cceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPD--FKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~--~~~l 507 (524)
..++|++.+.+|+|.|+.|+.|. ..+.+.++||.+++..+ +...+|+.+|..++ ||||+++++...++. ...+
T Consensus 36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkk---kKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaL 112 (338)
T KOG0668|consen 36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKK---KKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSL 112 (338)
T ss_pred ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHH---HHHHHHHHHHHhccCCCCeeehhhhhcCccccCchh
Confidence 45789999999999999999999 45677899999987653 56789999999996 999999999998754 5689
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
|+||+.+-+......
T Consensus 113 iFE~v~n~Dfk~ly~ 127 (338)
T KOG0668|consen 113 IFEYVNNTDFKQLYP 127 (338)
T ss_pred HhhhhccccHHHHhh
Confidence 999999988766543
|
|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=91.29 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=69.0
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEe-ecc-c------hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIF-NLQ-L------ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~-~~~-~------~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
....|...+.||+|+||.||+|.+.... +++|+. ... . ....+.+.+|++++..++|++++..+.++..++
T Consensus 331 ~~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~ 409 (535)
T PRK09605 331 VKRRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPE 409 (535)
T ss_pred cccccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCC
Confidence 3444566789999999999999975433 344432 211 1 112456889999999999999999888888888
Q ss_pred cceEEEcccCCCCHHHHHH
Q 040301 504 FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~ 522 (524)
..++||||+++++|.++++
T Consensus 410 ~~~lv~E~~~g~~L~~~l~ 428 (535)
T PRK09605 410 EKTIVMEYIGGKDLKDVLE 428 (535)
T ss_pred CCEEEEEecCCCcHHHHHH
Confidence 8999999999999999874
|
|
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-07 Score=95.98 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=67.3
Q ss_pred hhccccccCcccCCCCceEEEEEeCC--CCEEEEEEe--------------ec---cchHHHHHHHHHHHHHhcCCCCCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISD--WTNVAIKIF--------------NL---QLERAFRSFDSECEVLRNVCHRNL 492 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~vavK~~--------------~~---~~~~~~~~~~~Ei~~l~~l~H~ni 492 (524)
..++|+..+.||+|+||.||+|.... +...+.|.+ .. ........+.+|++++++++||||
T Consensus 146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI 225 (501)
T PHA03210 146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI 225 (501)
T ss_pred hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence 34689999999999999999987522 222222211 00 011234568899999999999999
Q ss_pred cceeEEEEcCCcceEEEcccCCCCHHHHHH
Q 040301 493 IKILSSCSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 493 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
|++++++...+..|+|+|++. +++.+++.
T Consensus 226 v~l~~~~~~~~~~~lv~e~~~-~~l~~~l~ 254 (501)
T PHA03210 226 LKIEEILRSEANTYMITQKYD-FDLYSFMY 254 (501)
T ss_pred CcEeEEEEECCeeEEEEeccc-cCHHHHHh
Confidence 999999999999999999986 57777653
|
|
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-07 Score=82.27 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=67.5
Q ss_pred CcccCCCCceEEEEEeCCCCEEEEEEeeccc---h-----HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQL---E-----RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~---~-----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+.||+|++|.||+|.. .|..+++|...... . .....+.+|++++..+.|++++....++...+..++||||
T Consensus 2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~ 80 (211)
T PRK14879 2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY 80 (211)
T ss_pred cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence 5789999999999987 66788999765322 1 1234678999999999999998888888788889999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
++|++|.+++.
T Consensus 81 ~~G~~L~~~~~ 91 (211)
T PRK14879 81 IEGEPLKDLIN 91 (211)
T ss_pred eCCcCHHHHHH
Confidence 99999998874
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-07 Score=94.16 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=75.1
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
|...+.||-|.||+|..+.. ++...||+|.+++.+ ..+....+.|-.||.+.+.+=||++|..|++.+.+|.||||
T Consensus 631 Fvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdY 710 (1034)
T KOG0608|consen 631 FVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDY 710 (1034)
T ss_pred eEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEec
Confidence 66788999999999999884 456679999997655 34456678999999999999999999999999999999999
Q ss_pred cCCCCHHHHH
Q 040301 512 LLNISITIIR 521 (524)
Q Consensus 512 ~~~gsL~~~l 521 (524)
++||++-.+|
T Consensus 711 IPGGDmMSLL 720 (1034)
T KOG0608|consen 711 IPGGDMMSLL 720 (1034)
T ss_pred cCCccHHHHH
Confidence 9999998776
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-08 Score=89.60 Aligned_cols=77 Identities=25% Similarity=0.388 Sum_probs=42.4
Q ss_pred CCCccEEEccCCcccccC----CcccccccCCCEEEccccccCCCCCCccccC-----ccccCCCCCCCCEEEccCCCCC
Q 040301 19 HQIYWVMDLSSNSFSGHI----PNTFGNLRHLSSLLLTWNNLTTESSLADQWS-----FLSALTNCRHLKALSLGSNPLG 89 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~ 89 (524)
+..++.+|||+|.|...- ...+.+-.+|+..+++.-...... ..++ +...+.+++.|+..+||+|-+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~k---de~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDK---DELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccH---HHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 356777888888776432 333445556666666653322210 0111 1134556677777777777776
Q ss_pred CCCChhHhc
Q 040301 90 GILPPVIGN 98 (524)
Q Consensus 90 ~~~~~~~~~ 98 (524)
...|..++.
T Consensus 106 ~~~~e~L~d 114 (388)
T COG5238 106 SEFPEELGD 114 (388)
T ss_pred cccchHHHH
Confidence 665555444
|
|
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.1e-07 Score=83.73 Aligned_cols=74 Identities=11% Similarity=-0.000 Sum_probs=61.8
Q ss_pred CCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 445 GSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 445 g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
|.||.||++.. .+++.+|+|++.... .+.+|...+....||||+++++++...+..++||||+++|+|.+++++
T Consensus 4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 78 (237)
T cd05576 4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK 78 (237)
T ss_pred cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence 88999999996 578899999997543 233455556667899999999999999999999999999999998853
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.8e-07 Score=83.27 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCceEEEEEeC-CCCEEEEEEeeccchHH-HHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 446 SFGSVYKGTIS-DWTNVAIKIFNLQLERA-FRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 446 ~~g~v~~~~~~-~~~~vavK~~~~~~~~~-~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+||.||+|... +++.+|+|.+....... .+.+.+|++.+++++|+||+++++++......++++||+++++|.++++.
T Consensus 1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~ 80 (244)
T smart00220 1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK 80 (244)
T ss_pred CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence 58999999975 58899999997654333 67899999999999999999999999999999999999999999998854
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=86.10 Aligned_cols=87 Identities=20% Similarity=0.158 Sum_probs=68.8
Q ss_pred cccccCcccCCCCceEEEEEeC-C--CCEEEEEEeeccc--hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcC----Cc
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS-D--WTNVAIKIFNLQL--ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNP----DF 504 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~-~--~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~----~~ 504 (524)
+|...+.||+|+||.||++... . +..||+|++.... ....+.+.+|+++++++ +||||+++++++... ..
T Consensus 1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~ 80 (332)
T cd07857 1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE 80 (332)
T ss_pred CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence 3677789999999999999963 3 6789999986432 22356788999999999 599999999976432 45
Q ss_pred ceEEEcccCCCCHHHHHH
Q 040301 505 KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~ 522 (524)
.++++||+. ++|.+++.
T Consensus 81 ~~~~~e~~~-~~L~~~l~ 97 (332)
T cd07857 81 LYLYEELME-ADLHQIIR 97 (332)
T ss_pred EEEEEeccc-CCHHHHHh
Confidence 789999986 68988874
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-08 Score=82.10 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=26.7
Q ss_pred CCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 040301 246 VLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305 (524)
Q Consensus 246 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 305 (524)
.++.|++++|+++..|..+..++.|+.|+++.|++. ..|..+..+.++-.|+..+|.+.
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 444444444444444433444444444444444444 33444444444455555555444
|
|
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.8e-07 Score=80.23 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=64.3
Q ss_pred cccCCCCceEEEEEeCCCCEEEEEEeeccc--------hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 441 LLGTGSFGSVYKGTISDWTNVAIKIFNLQL--------ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.||+|+||.||+|.+ ++..+++|...... ......+.+|++++..+.|+++.....++...+..++||||+
T Consensus 1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~ 79 (199)
T TIGR03724 1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI 79 (199)
T ss_pred CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence 479999999999996 56789999864321 112356789999999999988776666666777889999999
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
+|++|.+++.
T Consensus 80 ~g~~l~~~~~ 89 (199)
T TIGR03724 80 EGKPLKDVIE 89 (199)
T ss_pred CCccHHHHHh
Confidence 9999998764
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=77.63 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=58.4
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeeccchH--------------------------HHHHHHHHHHHHhcCCCCCc
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER--------------------------AFRSFDSECEVLRNVCHRNL 492 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~--------------------------~~~~~~~Ei~~l~~l~H~ni 492 (524)
...||+|+||+||+|...+|+.||||.++..... ....+.+|.+.+.++.|+++
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i 81 (190)
T cd05145 2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV 81 (190)
T ss_pred CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999778999999999753210 01224588999999999998
Q ss_pred cceeEEEEcCCcceEEEcccCCCCHH
Q 040301 493 IKILSSCSNPDFKALMWGRLLNISIT 518 (524)
Q Consensus 493 v~l~~~~~~~~~~~lv~e~~~~gsL~ 518 (524)
.....+... ..++||||++++++.
T Consensus 82 ~~p~~~~~~--~~~lVmE~~~g~~~~ 105 (190)
T cd05145 82 PVPEPILLK--KNVLVMEFIGDDGSP 105 (190)
T ss_pred CCceEEEec--CCEEEEEEecCCCch
Confidence 655554433 248999999988543
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-08 Score=93.08 Aligned_cols=175 Identities=18% Similarity=0.236 Sum_probs=80.1
Q ss_pred CCCEEEccCCCCCCC-CChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCc-Cccc-CCccccCCCCCCe
Q 040301 77 HLKALSLGSNPLGGI-LPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNND-LNGT-ISPTMGRLKQLRG 153 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~ 153 (524)
.|++|||++..|+.. +-..+.... +|+.|.+-++++.+.+...+++-.+|+.|+++.+. ++.. ..-.+.+++.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 356666666555532 122222332 55555555555555555555555566666665532 2211 0112345556666
Q ss_pred EecccCcccccCCcc-ccC-CCCCCEEEccCCccc---ccCCccccCCCCCCEEEccCC-cCCCccChhccCCCCCCEEE
Q 040301 154 LSLKYNNLEGSIPYD-LCH-LKLMYGIRLTGNKLS---GHIPPCLASLTSLRELHLGSN-KLTSSIPSSLWSLEYILMIN 227 (524)
Q Consensus 154 L~L~~n~i~~~~~~~-~~~-l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 227 (524)
|++++|.+....-.. +.+ -++|..|+++++.-. ..+..-...+++|.+|||++| .++...-..|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 666666554322111 111 134555555554421 001111234566666666554 23332334455556666666
Q ss_pred cCCCcCcccCCcC---ccCCCCCCEEEcCC
Q 040301 228 LSSNSLNDSLPSN---IQTLKVLRVLDLSR 254 (524)
Q Consensus 228 L~~n~l~~~~~~~---~~~l~~L~~L~l~~ 254 (524)
++.|.. .+|.. +...|+|.+|++.+
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 655542 33332 23445555555443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-08 Score=91.34 Aligned_cols=238 Identities=23% Similarity=0.222 Sum_probs=150.6
Q ss_pred CCCEEEccCCCCCCCCChhHhcCc-ccccEEEeccCccccc-CCccccCC-CCCCeEEcccCcCcc-cCCccccCCCCCC
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFS-ASFQNFYAFNCKLKGN-IPQEIGNL-RGLTLLSLFNNDLNG-TISPTMGRLKQLR 152 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~l~~~-~~~~~~~l-~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 152 (524)
.=+.||+.+-+|. |..++.+. +....+.+........ +...+.-+ ++|++|||++..++- .+-..+..+.+|+
T Consensus 137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK 213 (419)
T ss_pred ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence 3478888888766 44444432 2344455544333221 11112222 468888988887762 2334566788889
Q ss_pred eEecccCcccccCCccccCCCCCCEEEccCCc-cccc-CCccccCCCCCCEEEccCCcCCCccC-hhccC-CCCCCEEEc
Q 040301 153 GLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNK-LSGH-IPPCLASLTSLRELHLGSNKLTSSIP-SSLWS-LEYILMINL 228 (524)
Q Consensus 153 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~-l~~L~~L~L 228 (524)
.|.+.++++.+.+...+.+-.+|+.|+++.+. ++.. ..-.+.+++.|..|+++.|.+....- ..+.. -++|..|++
T Consensus 214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl 293 (419)
T KOG2120|consen 214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL 293 (419)
T ss_pred hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence 99999998888777788888889999888764 3211 11235678889999999887664321 12222 357888899
Q ss_pred CCCcCc---ccCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEEEccCCcccCCCccc---ccCCCCCCEEeCC
Q 040301 229 SSNSLN---DSLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQGPIPES---VGSLISLESLDLS 300 (524)
Q Consensus 229 ~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~l~ 300 (524)
+++.-. ..+..-...+|+|.+|||+.|..-... ..+..++.|++|.++.|-. .+|.. +...|+|.+||+.
T Consensus 294 sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 294 SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEec
Confidence 886421 123333457899999999987543222 5677889999999998843 45544 4778999999998
Q ss_pred CCcCCCCCcccccCCCCCC
Q 040301 301 GNNLSGKIPKSLETLSHLK 319 (524)
Q Consensus 301 ~N~l~~~~~~~~~~l~~L~ 319 (524)
+.--.+...-....+++++
T Consensus 372 g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 372 GCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred cccCchHHHHHHHhCcccc
Confidence 7754433322333445544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.2e-08 Score=79.64 Aligned_cols=83 Identities=23% Similarity=0.410 Sum_probs=43.1
Q ss_pred CCCCEEEccCCcCCCccChhcc-CCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEc
Q 040301 197 TSLRELHLGSNKLTSSIPSSLW-SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSL 275 (524)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L 275 (524)
..|+..++++|.+. .+|..|. ..+.++.|+|++|.++ .+|..+..++.|+.|+++.|.+...+..+..+.+|..|+.
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 34444455555554 2233332 3335555555555555 3455555555566666666555555544444555555565
Q ss_pred cCCccc
Q 040301 276 ASNQFQ 281 (524)
Q Consensus 276 ~~N~l~ 281 (524)
.+|.+.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 555554
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-07 Score=84.16 Aligned_cols=182 Identities=21% Similarity=0.191 Sum_probs=88.8
Q ss_pred CCCeEecccCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCC-ccChhccCCCCCCEE
Q 040301 150 QLRGLSLKYNNLEG--SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTS-SIPSSLWSLEYILMI 226 (524)
Q Consensus 150 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 226 (524)
.++++||.+|.|+. .+...+.++|.|+.|+++.|++...+...-.-..+|+.|-|.+..+.- .....+..+|.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 34444444444441 222233344444444444444432211111122344455444444331 122333444555555
Q ss_pred EcCCCcCcc--cCCcCcc-CCCCCCEEEcCCCcCcccc---ccccccCCCCEEEccCCcccCCC-cccccCCCCCCEEeC
Q 040301 227 NLSSNSLND--SLPSNIQ-TLKVLRVLDLSRNQLSGDI---STIGALVDLETLSLASNQFQGPI-PESVGSLISLESLDL 299 (524)
Q Consensus 227 ~L~~n~l~~--~~~~~~~-~l~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l 299 (524)
.++.|.+.. ....... .-+.+++|++..|...-.. ..-..+|++..+.+..|++.... ...+..+|.+..|+|
T Consensus 152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL 231 (418)
T KOG2982|consen 152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL 231 (418)
T ss_pred hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence 555552211 0111111 1235555655555432111 11234577888888888776432 234556677778888
Q ss_pred CCCcCCC-CCcccccCCCCCCeEEccCCcCccc
Q 040301 300 SGNNLSG-KIPKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 300 ~~N~l~~-~~~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
+.|+|.. ..-+.+..+++|..+.+++||+...
T Consensus 232 ~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 232 GANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 8888753 2235667788888888888887653
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.6e-07 Score=57.57 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=27.2
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTE 59 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 59 (524)
++|++|++++|+|+ .+|..+++|++|++|++++|+++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 46777888888777 5565677777888888888777655
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-07 Score=84.12 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=55.9
Q ss_pred CCCCCCCCEEEccCCCCCCCCC----hhHhcCcccccEEEeccCccc---ccCC-------ccccCCCCCCeEEcccCcC
Q 040301 72 LTNCRHLKALSLGSNPLGGILP----PVIGNFSASFQNFYAFNCKLK---GNIP-------QEIGNLRGLTLLSLFNNDL 137 (524)
Q Consensus 72 ~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~~L~~L~l~~n~l~---~~~~-------~~~~~l~~L~~L~l~~n~l 137 (524)
+.-+..++.+|||+|.|..... ..+.+-. +|+..+++.-... ..++ +.+.++|+|+..+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3446778888999988875533 3344433 6666666653221 1222 3345677888888888877
Q ss_pred cccCCccc----cCCCCCCeEecccCccc
Q 040301 138 NGTISPTM----GRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 138 ~~~~~~~~----~~l~~L~~L~L~~n~i~ 162 (524)
....|+.+ +.-+.|.+|.+++|.+.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 76555543 44566777777777765
|
|
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-06 Score=81.34 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=76.7
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCC------CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEE
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISD------WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSS 498 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~ 498 (524)
.+++......++....+-+|.||.||+|.+.+ .+.|-||.++... .-+...+.+|.-.+..+.|||+.+..+.
T Consensus 276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V 355 (563)
T KOG1024|consen 276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV 355 (563)
T ss_pred HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence 45666666778888888999999999997632 2345567665544 2345678899999999999999999999
Q ss_pred EEc-CCcceEEEcccCCCCHHHHHH
Q 040301 499 CSN-PDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 499 ~~~-~~~~~lv~e~~~~gsL~~~l~ 522 (524)
+.+ .+..+++|.++.-|+|..||+
T Consensus 356 ~ie~~~~P~V~y~~~~~gNLK~FL~ 380 (563)
T KOG1024|consen 356 SIEDYATPFVLYPATGVGNLKSFLQ 380 (563)
T ss_pred EeeccCcceEEEeccCcchHHHHHH
Confidence 876 456899999999999999997
|
|
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.6e-06 Score=74.83 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=65.7
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccch----------------------HHHHHHHHHHHHH
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE----------------------RAFRSFDSECEVL 484 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~----------------------~~~~~~~~Ei~~l 484 (524)
+++...-..|...+.||+|+||.||++..++|+.+|||+++.... .....+.+|+.++
T Consensus 8 ~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l 87 (198)
T cd05144 8 HTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAAL 87 (198)
T ss_pred HHHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHH
Confidence 344444444778899999999999999987899999998754220 0112367889999
Q ss_pred hcCCCCC--ccceeEEEEcCCcceEEEcccCCCCHHHHH
Q 040301 485 RNVCHRN--LIKILSSCSNPDFKALMWGRLLNISITIIR 521 (524)
Q Consensus 485 ~~l~H~n--iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l 521 (524)
..+.|++ +++.++ ....++||||+++++|.+..
T Consensus 88 ~~l~~~~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~ 122 (198)
T cd05144 88 KALYEEGFPVPKPID----WNRHAVVMEYIDGVELYRVR 122 (198)
T ss_pred HHHHHcCCCCCceee----cCCceEEEEEeCCcchhhcc
Confidence 9998874 444443 34569999999999987653
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.4e-08 Score=88.63 Aligned_cols=88 Identities=18% Similarity=0.293 Sum_probs=68.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeec--cchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNL--QLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------- 502 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~--~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------- 502 (524)
.+.|+...++|+|.||.|++|+. .+|+.||+|++-- ...+-...-.+|++++..+.|+|++.+++.|...
T Consensus 16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~ 95 (376)
T KOG0669|consen 16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRD 95 (376)
T ss_pred chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccc
Confidence 35677788999999999999996 4677899887632 2222234457899999999999999999988652
Q ss_pred -CcceEEEcccCCCCHHHHH
Q 040301 503 -DFKALMWGRLLNISITIIR 521 (524)
Q Consensus 503 -~~~~lv~e~~~~gsL~~~l 521 (524)
..+|+||.+|+. +|...|
T Consensus 96 r~t~ylVf~~ceh-DLaGlL 114 (376)
T KOG0669|consen 96 RATFYLVFDFCEH-DLAGLL 114 (376)
T ss_pred cceeeeeHHHhhh-hHHHHh
Confidence 358999999996 777665
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-06 Score=82.66 Aligned_cols=92 Identities=25% Similarity=0.263 Sum_probs=78.0
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-C---CCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCc
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-S---DWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDF 504 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~---~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~ 504 (524)
......|..+++||+|.|+.||+++. . ..+.||+|.+.... ......+|++.|.++ .+.||+++.+++..++.
T Consensus 32 p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~ 109 (418)
T KOG1167|consen 32 PFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQ 109 (418)
T ss_pred hhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHHHHhccchhhhcchhhhccCCe
Confidence 34455688899999999999999995 2 45779999997643 235578999999999 68999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
..+|+||++.-+..+++++
T Consensus 110 v~ivlp~~~H~~f~~l~~~ 128 (418)
T KOG1167|consen 110 VAIVLPYFEHDRFRDLYRS 128 (418)
T ss_pred eEEEecccCccCHHHHHhc
Confidence 9999999999999888765
|
|
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-06 Score=74.53 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=77.0
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcc
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~ 505 (524)
++...++......+|+|+||.|-+.++ .+|+..|+|++...- .+..++..+|+.+..+. ..|.+|.+||.+......
T Consensus 41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdv 120 (282)
T KOG0984|consen 41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDV 120 (282)
T ss_pred cccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccE
Confidence 445555666677899999999988885 689999999997654 44566788899876554 799999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
||.||.|.- ||..|.++
T Consensus 121 wIcME~M~t-Sldkfy~~ 137 (282)
T KOG0984|consen 121 WICMELMDT-SLDKFYRK 137 (282)
T ss_pred EEeHHHhhh-hHHHHHHH
Confidence 999999985 88888775
|
|
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.5e-07 Score=80.97 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=68.4
Q ss_pred hhcccccc-CcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhc-CCCCCccceeEEEEc----CCc
Q 040301 432 ATDEFNEC-NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRN-VCHRNLIKILSSCSN----PDF 504 (524)
Q Consensus 432 ~~~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~-l~H~niv~l~~~~~~----~~~ 504 (524)
.+++|++. .++|-|-.|.|..+.. .+|+.+|+|.+... ....+|++..-. -.|||||.++++|.. ...
T Consensus 59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds-----~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkc 133 (400)
T KOG0604|consen 59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS-----PKARREVELHWMASGHPHIVSIIDVYENSYQGRKC 133 (400)
T ss_pred chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC-----HHHHhHhhhhhhhcCCCceEEeehhhhhhccCcee
Confidence 45566653 5789999999999986 57888999987432 345578987544 479999999998865 356
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
+.+|||+|+||.|+..+++
T Consensus 134 LLiVmE~meGGeLfsriq~ 152 (400)
T KOG0604|consen 134 LLIVMECMEGGELFSRIQD 152 (400)
T ss_pred eEeeeecccchHHHHHHHH
Confidence 8899999999999998864
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6e-07 Score=85.27 Aligned_cols=92 Identities=21% Similarity=0.159 Sum_probs=72.8
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 507 (524)
..+|....++|+|+||.|..|..+ +.+.||||++++.. ..+.+--..|-++|.-- +-|.++++..+|++-+.+|.
T Consensus 348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyF 427 (683)
T KOG0696|consen 348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYF 427 (683)
T ss_pred ecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheee
Confidence 357888899999999999999864 35679999997643 11222234566777665 57899999999999999999
Q ss_pred EEcccCCCCHHHHHHhC
Q 040301 508 MWGRLLNISITIIRRHL 524 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~~ 524 (524)
||||+.||+|-..|+++
T Consensus 428 VMEyvnGGDLMyhiQQ~ 444 (683)
T KOG0696|consen 428 VMEYVNGGDLMYHIQQV 444 (683)
T ss_pred EEEEecCchhhhHHHHh
Confidence 99999999999888764
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.2e-06 Score=70.52 Aligned_cols=84 Identities=19% Similarity=0.125 Sum_probs=44.8
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccC-CccccCCCCCCeEecccCcccccCC---ccccCCCCCCE
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTI-SPTMGRLKQLRGLSLKYNNLEGSIP---YDLCHLKLMYG 177 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~ 177 (524)
.|.+|.+.+|.|+.+.|.--.-+++|+.|.|.+|.+.... -..+..+|+|++|.+-+|.++..-. ..+..+|+|+.
T Consensus 65 rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~ 144 (233)
T KOG1644|consen 65 RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRT 144 (233)
T ss_pred ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceE
Confidence 3444444444444444433334455666666666554221 1234556677777777776663221 24566777777
Q ss_pred EEccCCcc
Q 040301 178 IRLTGNKL 185 (524)
Q Consensus 178 L~l~~n~l 185 (524)
||...-..
T Consensus 145 LDF~kVt~ 152 (233)
T KOG1644|consen 145 LDFQKVTR 152 (233)
T ss_pred eehhhhhH
Confidence 77766443
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.6e-06 Score=79.00 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=70.5
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-----C---CCccceeEEEEc---
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-----H---RNLIKILSSCSN--- 501 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-----H---~niv~l~~~~~~--- 501 (524)
+.|-..+++|=|.|++||.|.. .+.+.||+|+.+... ...+....||++|+.++ | ..||++++.|..
T Consensus 78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq-hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGp 156 (590)
T KOG1290|consen 78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ-HYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGP 156 (590)
T ss_pred ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhh-HHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCC
Confidence 5688889999999999999995 567889999986432 34456778999998873 3 369999999976
Q ss_pred -CCcceEEEcccCCCCHHHHHHh
Q 040301 502 -PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 -~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..+|||+||+ |-+|..+|++
T Consensus 157 NG~HVCMVfEvL-GdnLLklI~~ 178 (590)
T KOG1290|consen 157 NGQHVCMVFEVL-GDNLLKLIKY 178 (590)
T ss_pred CCcEEEEEehhh-hhHHHHHHHH
Confidence 45799999988 5689888864
|
|
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=98.02 E-value=9e-06 Score=75.41 Aligned_cols=88 Identities=13% Similarity=0.004 Sum_probs=62.6
Q ss_pred hhhhhccccccCcccCCCCceEEEEE--eCCCCEEEEEEeeccch------------------------HHHHHHHHHHH
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGT--ISDWTNVAIKIFNLQLE------------------------RAFRSFDSECE 482 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~--~~~~~~vavK~~~~~~~------------------------~~~~~~~~Ei~ 482 (524)
+..--..|.+.+.||+|+||.||+|. ..+|+.||+|.+..... .....+.+|++
T Consensus 23 ~~~~~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 102 (237)
T smart00090 23 LLNRGILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFR 102 (237)
T ss_pred HHhcCchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHH
Confidence 33333457888999999999999998 46899999999864320 01123578999
Q ss_pred HHhcCCCCC--ccceeEEEEcCCcceEEEcccCCCCHHHH
Q 040301 483 VLRNVCHRN--LIKILSSCSNPDFKALMWGRLLNISITII 520 (524)
Q Consensus 483 ~l~~l~H~n--iv~l~~~~~~~~~~~lv~e~~~~gsL~~~ 520 (524)
++.++.+.. +.+.+++ ...++||||++++++..+
T Consensus 103 ~L~~L~~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~ 138 (237)
T smart00090 103 NLQRLYEAGVPVPKPIAW----RRNVLVMEFIGGDGLPAP 138 (237)
T ss_pred HHHHHHhcCCCCCeeeEe----cCceEEEEEecCCccccc
Confidence 999997633 3344432 235899999999887654
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-05 Score=69.86 Aligned_cols=57 Identities=23% Similarity=0.240 Sum_probs=23.1
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
..+||++|.+.. ...|..+++|..|.+.+|+|+..-|.--.-+++|+.|.+++|++.
T Consensus 45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 344444444431 123334444444444444444333322222344444444444443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.8e-05 Score=76.14 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=8.4
Q ss_pred ccCCCEEEccccccCCC
Q 040301 43 LRHLSSLLLTWNNLTTE 59 (524)
Q Consensus 43 l~~L~~L~l~~n~l~~~ 59 (524)
+.+++.|++++|.++.+
T Consensus 51 ~~~l~~L~Is~c~L~sL 67 (426)
T PRK15386 51 ARASGRLYIKDCDIESL 67 (426)
T ss_pred hcCCCEEEeCCCCCccc
Confidence 34455555555544443
|
|
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-06 Score=75.16 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=68.1
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEccc
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.+....+|+|..|+||++++ .+|..+|||.+.+.. +...++....+.++... +.|.||+.+|||..+..+++-||.|
T Consensus 94 l~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelM 173 (391)
T KOG0983|consen 94 LENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELM 173 (391)
T ss_pred hhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHH
Confidence 34456799999999999997 468889999997755 44566777788776665 4899999999999999999999988
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
.. -++.+++
T Consensus 174 s~-C~ekLlk 182 (391)
T KOG0983|consen 174 ST-CAEKLLK 182 (391)
T ss_pred HH-HHHHHHH
Confidence 53 4444444
|
|
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2e-05 Score=82.75 Aligned_cols=88 Identities=19% Similarity=0.277 Sum_probs=58.7
Q ss_pred hhccccccCcccCCCCceEEEEEe-CC----CCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEE------EE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SD----WTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSS------CS 500 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~----~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~------~~ 500 (524)
..++|+..+.||+|+||.||+|+. .+ +..||+|++..... .+.+..| .+....+.++..+... +.
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~--~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~ 205 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA--VEIWMNE--RVRRACPNSCADFVYGFLEPVSSK 205 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch--hHHHHHH--HHHhhchhhHHHHHHhhhcccccc
Confidence 567899999999999999999997 34 68899998864332 1111111 1122222222222221 24
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+...++||||+++|+|.+++++
T Consensus 206 ~~~~~~LV~ey~~~gsL~~~l~~ 228 (566)
T PLN03225 206 KEDEYWLVWRYEGESTLADLMQS 228 (566)
T ss_pred cCCceEEEEEecCCCcHHHHHHh
Confidence 56789999999999999998853
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.2e-06 Score=85.89 Aligned_cols=83 Identities=24% Similarity=0.340 Sum_probs=67.4
Q ss_pred ccccCcccCCCCce-EEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccC
Q 040301 436 FNECNLLGTGSFGS-VYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 436 ~~~~~~ig~g~~g~-v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
|...+.+|.|.-|+ ||+|.+ .|+.||||++-... ..-..+||..++.- .|||||++++.-.+++..||..|.|.
T Consensus 511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e~---~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~ 586 (903)
T KOG1027|consen 511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEEF---FDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA 586 (903)
T ss_pred eccHHHcccCCCCcEEEEEee-CCceehHHHHhhHh---HHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh
Confidence 33445678888885 899998 67899999985433 23456899999988 69999999988888899999999998
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
- +|.|++..
T Consensus 587 ~-sL~dlie~ 595 (903)
T KOG1027|consen 587 C-SLQDLIES 595 (903)
T ss_pred h-hHHHHHhc
Confidence 4 99999863
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.7e-06 Score=79.99 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=71.0
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhc-CCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRN-VCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~-l~H~niv~l~~~~~~~~~~~l 507 (524)
-.+|....+||+|+|++|..+++ ++.+.||+|++++... .+..=...|-.++.. -+||.+|.+..||+++..++.
T Consensus 249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlff 328 (593)
T KOG0695|consen 249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF 328 (593)
T ss_pred cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence 35788899999999999999996 5678899999976432 222223445555544 489999999999999999999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
|.||++||+|--.++
T Consensus 329 vieyv~ggdlmfhmq 343 (593)
T KOG0695|consen 329 VIEYVNGGDLMFHMQ 343 (593)
T ss_pred EEEEecCcceeeehh
Confidence 999999999876554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.95 E-value=7e-06 Score=53.51 Aligned_cols=38 Identities=32% Similarity=0.499 Sum_probs=27.8
Q ss_pred cCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCC
Q 040301 44 RHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGG 90 (524)
Q Consensus 44 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 90 (524)
++|++|++++|+|++++ ..+++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~---------~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP---------PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG---------GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccC---------chHhCCCCCCEEEecCCCCCC
Confidence 47888888888888653 447888888888888888774
|
... |
| >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=68.02 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=65.1
Q ss_pred ccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC--CCccceeEEEEcCCcceEEEcccCCC
Q 040301 438 ECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH--RNLIKILSSCSNPDFKALMWGRLLNI 515 (524)
Q Consensus 438 ~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H--~niv~l~~~~~~~~~~~lv~e~~~~g 515 (524)
..+.+|+|.++.||++...+ ..+++|....... ...+.+|+..++.++| ..+++++++...++..+++|||++++
T Consensus 2 ~~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~ 78 (155)
T cd05120 2 SIKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGE 78 (155)
T ss_pred cceecccccccceEEEEecC-CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCe
Confidence 34678999999999999754 6789998865433 4678899999999976 58999999888888999999999988
Q ss_pred CHH
Q 040301 516 SIT 518 (524)
Q Consensus 516 sL~ 518 (524)
.+.
T Consensus 79 ~~~ 81 (155)
T cd05120 79 TLD 81 (155)
T ss_pred ecc
Confidence 775
|
The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=5e-05 Score=74.47 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=22.7
Q ss_pred CCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccC
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNN 135 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 135 (524)
.+++.|++++|.+.. +| .++.+|+.|.+.+|.-...+|..+ .++|++|++++|
T Consensus 52 ~~l~~L~Is~c~L~s-LP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIES-LP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcc-cC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 445555555554442 22 123345555555433322333322 134555555554
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.4e-06 Score=85.01 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=76.9
Q ss_pred ccccccCcccCCCCceEEEEEeCCCC-EEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWT-NVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~-~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.+++....+|-|+||.|-.+...... .+|+|.+++.. ..+.+....|-.+|..++.|.||++|..|.+..++|++|
T Consensus 420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLm 499 (732)
T KOG0614|consen 420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLM 499 (732)
T ss_pred hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhH
Confidence 45566678999999999998875433 48999987644 345667889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHhC
Q 040301 510 GRLLNISITIIRRHL 524 (524)
Q Consensus 510 e~~~~gsL~~~l~~~ 524 (524)
|-|-||.+-..||++
T Consensus 500 EaClGGElWTiLrdR 514 (732)
T KOG0614|consen 500 EACLGGELWTILRDR 514 (732)
T ss_pred HhhcCchhhhhhhhc
Confidence 999999999888763
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.6e-06 Score=78.02 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=68.9
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-----Ccce
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-----DFKA 506 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~~~~ 506 (524)
+.+.++.||.|.||.||.++. ++|+.||.|++.... -...+.+.+|++++.-++|.|++..++..+.. +++|
T Consensus 54 Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiY 133 (449)
T KOG0664|consen 54 DIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELY 133 (449)
T ss_pred cCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHH
Confidence 456778999999999999997 579999999986432 23456788999999999999999998877654 3678
Q ss_pred EEEcccCCCCHHHHH
Q 040301 507 LMWGRLLNISITIIR 521 (524)
Q Consensus 507 lv~e~~~~gsL~~~l 521 (524)
+|+|.|. .+|+..|
T Consensus 134 V~TELmQ-SDLHKII 147 (449)
T KOG0664|consen 134 VLTELMQ-SDLHKII 147 (449)
T ss_pred HHHHHHH-hhhhhee
Confidence 9999886 4776543
|
|
| >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.2e-05 Score=78.51 Aligned_cols=84 Identities=14% Similarity=0.138 Sum_probs=56.8
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeeccchHH----------------------------------------HHHHH
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERA----------------------------------------FRSFD 478 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~----------------------------------------~~~~~ 478 (524)
.+.+|+|++|+||+|++.+|+.||||+..+..... .-+|.
T Consensus 122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~ 201 (437)
T TIGR01982 122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR 201 (437)
T ss_pred CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence 36899999999999999999999999986542110 00255
Q ss_pred HHHHHHhcC----CCCCccceeEEEEc-CCcceEEEcccCCCCHHHHHH
Q 040301 479 SECEVLRNV----CHRNLIKILSSCSN-PDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 479 ~Ei~~l~~l----~H~niv~l~~~~~~-~~~~~lv~e~~~~gsL~~~l~ 522 (524)
+|.+.+.++ .|.+-+.....+.+ ....+|||||++|++|.++.+
T Consensus 202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~ 250 (437)
T TIGR01982 202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAA 250 (437)
T ss_pred HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHH
Confidence 566655554 23333333333322 345799999999999987653
|
This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.7e-06 Score=74.60 Aligned_cols=105 Identities=22% Similarity=0.207 Sum_probs=64.6
Q ss_pred CccEEEccCC-cccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCC--CCCCCCChhHh
Q 040301 21 IYWVMDLSSN-SFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSN--PLGGILPPVIG 97 (524)
Q Consensus 21 ~l~~Ldls~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~ 97 (524)
++..+.+-.+ ...|.+......+.+|+.|++.+..++.+ ..+..|++|++|+++.| .+.+.++-...
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~----------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e 88 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL----------TNFPKLPKLKKLELSDNYRRVSGGLEVLAE 88 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec----------ccCCCcchhhhhcccCCcccccccceehhh
Confidence 3444444333 23345666777788999999999998876 56677889999999999 55554444444
Q ss_pred cCcccccEEEeccCcccccCCcc---ccCCCCCCeEEcccCcCc
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQE---IGNLRGLTLLSLFNNDLN 138 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~ 138 (524)
..+ +|+++++++|++.. +.. +..+.+|..|++.+|..+
T Consensus 89 ~~P-~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 89 KAP-NLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hCC-ceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 443 66666666666642 222 233444455555555443
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.8e-06 Score=75.61 Aligned_cols=84 Identities=21% Similarity=0.369 Sum_probs=69.5
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeec--cchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCC
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNL--QLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNIS 516 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~--~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gs 516 (524)
..++.+...|..|+|+++. ..+++|++.. ......++|..|...++-+.||||+..+|.|..+....++..||+.||
T Consensus 195 ~tkl~e~hsgelwrgrwqg-ndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gs 273 (448)
T KOG0195|consen 195 ITKLAESHSGELWRGRWQG-NDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGS 273 (448)
T ss_pred hhhhccCCCcccccccccC-cchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchH
Confidence 3467888899999999854 4556676643 223456789999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 040301 517 ITIIRRH 523 (524)
Q Consensus 517 L~~~l~~ 523 (524)
|+..+++
T Consensus 274 lynvlhe 280 (448)
T KOG0195|consen 274 LYNVLHE 280 (448)
T ss_pred HHHHHhc
Confidence 9998864
|
|
| >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.9e-05 Score=81.17 Aligned_cols=88 Identities=13% Similarity=0.172 Sum_probs=59.1
Q ss_pred hhccccccCcccCCCCceEEEEEeCC-CCEEEEEEeeccchH----------------------------------HHH-
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISD-WTNVAIKIFNLQLER----------------------------------AFR- 475 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~~~~~~~~----------------------------------~~~- 475 (524)
.-.+|+. +.+|+|++|+||+|++++ |+.||||++.+.... ..+
T Consensus 118 ~F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~ 196 (537)
T PRK04750 118 WFDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKT 196 (537)
T ss_pred HHHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHH
Confidence 3445776 789999999999999876 999999999754210 011
Q ss_pred -----HHHHHHHHHhcC----CCCCccceeEEEEc-CCcceEEEcccCCCCHHHH
Q 040301 476 -----SFDSECEVLRNV----CHRNLIKILSSCSN-PDFKALMWGRLLNISITII 520 (524)
Q Consensus 476 -----~~~~Ei~~l~~l----~H~niv~l~~~~~~-~~~~~lv~e~~~~gsL~~~ 520 (524)
+|.+|...+.++ .+.+.+.+...+.+ ....+|||||++|+.+.++
T Consensus 197 l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~ 251 (537)
T PRK04750 197 LHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDV 251 (537)
T ss_pred HHHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhH
Confidence 244555444444 24444444444433 3457899999999999764
|
|
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.4e-05 Score=75.69 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=72.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC--C----CccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH--R----NLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H--~----niv~l~~~~~~~~~~ 505 (524)
+..|.+...+|+|.||.|-.+.. ..+..||+|+++...+ -.++..-|++++.++.+ | .+|++.++|.-.+..
T Consensus 88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~k-YreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghi 166 (415)
T KOG0671|consen 88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDK-YREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHI 166 (415)
T ss_pred ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCce
Confidence 56799999999999999999986 3578899999975432 34566789999999943 2 478888889889999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|||+|.+ |-|+.+||++
T Consensus 167 Civfell-G~S~~dFlk~ 183 (415)
T KOG0671|consen 167 CIVFELL-GLSTFDFLKE 183 (415)
T ss_pred EEEEecc-ChhHHHHhcc
Confidence 9999977 4599999975
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.2e-05 Score=70.98 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=69.9
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeE-EEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILS-SCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~-~~~~~~~~~lv~e 510 (524)
+.|.+.+.+|+|.||.+-.+.++ ..+.+++|.+++... ..++|.+|...--.+ .|.||+.-|+ .|++.+....++|
T Consensus 24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t-t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE 102 (378)
T KOG1345|consen 24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT-TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQE 102 (378)
T ss_pred hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh-hHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeec
Confidence 56888999999999999999974 567799999876543 457899998764455 5899997776 5677788889999
Q ss_pred ccCCCCHHHHH
Q 040301 511 RLLNISITIIR 521 (524)
Q Consensus 511 ~~~~gsL~~~l 521 (524)
|++.|+|..-+
T Consensus 103 ~aP~gdL~snv 113 (378)
T KOG1345|consen 103 FAPRGDLRSNV 113 (378)
T ss_pred cCccchhhhhc
Confidence 99999998643
|
|
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=64.35 Aligned_cols=80 Identities=14% Similarity=0.002 Sum_probs=60.4
Q ss_pred cccCcccCCCCceEEEEEeCCCCEEEEEEeeccch----HHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEEcc
Q 040301 437 NECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE----RAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~----~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..+..+++|+||+||.+.- .+..++.+.+..... -....|.+|+++|+++. |+++++++++ ...+++|||
T Consensus 5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmey 79 (218)
T PRK12274 5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSY 79 (218)
T ss_pred ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEee
Confidence 3557899999999996665 567777776654321 11335889999999995 5889999886 447999999
Q ss_pred cCCCCHHHHH
Q 040301 512 LLNISITIIR 521 (524)
Q Consensus 512 ~~~gsL~~~l 521 (524)
++|.+|.+.+
T Consensus 80 I~G~~L~~~~ 89 (218)
T PRK12274 80 LAGAAMYQRP 89 (218)
T ss_pred ecCccHHhhh
Confidence 9999987643
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.8e-05 Score=78.46 Aligned_cols=87 Identities=21% Similarity=0.129 Sum_probs=72.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e 510 (524)
+++|.....+|.|+|+.|-.+.. ++++.+|||++.... .+-.+|+.++... +||||+++.+.+.++.+.|+|||
T Consensus 321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e 396 (612)
T KOG0603|consen 321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVME 396 (612)
T ss_pred chhhccccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecCCceeeeeeh
Confidence 56788888899999999999985 577889999997652 2233577676655 79999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
++.||-+.+.++.
T Consensus 397 ~l~g~ell~ri~~ 409 (612)
T KOG0603|consen 397 LLDGGELLRRIRS 409 (612)
T ss_pred hccccHHHHHHHh
Confidence 9999999887764
|
|
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00023 Score=68.74 Aligned_cols=88 Identities=22% Similarity=0.274 Sum_probs=58.7
Q ss_pred ccccccCcccCCCCceEEEEEeCC----CCEEEEEEeeccchH--H---------HHHHHHHHHHHhcCCCCCccceeEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISD----WTNVAIKIFNLQLER--A---------FRSFDSECEVLRNVCHRNLIKILSS 498 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~~~~~~~~--~---------~~~~~~Ei~~l~~l~H~niv~l~~~ 498 (524)
..|.+.+.||+|+||.||+|...+ +..+|+|........ . ......+...+..++|+++++++++
T Consensus 12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~ 91 (294)
T PHA02882 12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC 91 (294)
T ss_pred CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence 579999999999999999999643 345666654322110 0 1122344455677899999999998
Q ss_pred EEcCC----cceEEEcccCCCCHHHHHH
Q 040301 499 CSNPD----FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 499 ~~~~~----~~~lv~e~~~~gsL~~~l~ 522 (524)
+.... ..++++|++.. ++.+.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 118 (294)
T PHA02882 92 GSFKRCRMYYRFILLEKLVE-NTKEIFK 118 (294)
T ss_pred eeEecCCceEEEEEEehhcc-CHHHHHH
Confidence 76543 34788887753 6655543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00023 Score=59.18 Aligned_cols=106 Identities=22% Similarity=0.299 Sum_probs=41.1
Q ss_pred cccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccC
Q 040301 38 NTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNI 117 (524)
Q Consensus 38 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 117 (524)
..|.+..+|+.+.+.. .++.+.. ..|.++++|+.+++.++ +.......|.... +++.+.+.+ .+....
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~--------~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~ 73 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGE--------NAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-SLESITFPN-NLKSIG 73 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-T--------TTTTT-TT-SEEEESST-TSCE-TTTTTT-T-T-EEEEETS-TT-EE-
T ss_pred HHHhCCCCCCEEEECC-CeeEeCh--------hhccccccccccccccc-ccccceeeeeccc-ccccccccc-cccccc
Confidence 3455556666666653 4554443 55566656666666553 4433333444433 444444433 222223
Q ss_pred CccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecc
Q 040301 118 PQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLK 157 (524)
Q Consensus 118 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 157 (524)
...|.+.++|+.+++..+ +..+....|.++ +|+.+.+.
T Consensus 74 ~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 334444555555555433 333333444444 55555444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=4e-05 Score=81.49 Aligned_cols=107 Identities=18% Similarity=0.298 Sum_probs=50.7
Q ss_pred CCccEEEccCCccccc-CCcccc-cccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 20 QIYWVMDLSSNSFSGH-IPNTFG-NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~-~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
++|+.||+++...-.. =|..++ .+|.|+.|.+++-.+.... |-....++++|..||+|+++++.. ..+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-------F~~lc~sFpNL~sLDIS~TnI~nl--~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-------FSQLCASFPNLRSLDISGTNISNL--SGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-------HHHHhhccCccceeecCCCCccCc--HHHh
Confidence 4566666666433211 122222 3566666666664443321 013344556666666666666633 3444
Q ss_pred cCcccccEEEeccCcccc-cCCccccCCCCCCeEEcccCc
Q 040301 98 NFSASFQNFYAFNCKLKG-NIPQEIGNLRGLTLLSLFNND 136 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 136 (524)
.+. +|+.|.+.+-.+.. ..-..+.+|++|+.||+|...
T Consensus 193 ~Lk-nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 193 RLK-NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccc-cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 444 55555544443321 112234445555555555433
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00045 Score=67.30 Aligned_cols=86 Identities=24% Similarity=0.347 Sum_probs=73.0
Q ss_pred ccccCcccCCCCceEEEEEeCCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCC-CccceeEEEEcCCcceEEEcc
Q 040301 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHR-NLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~-niv~l~~~~~~~~~~~lv~e~ 511 (524)
|.....+|.|+|+.||++... ..+|+|.+..... .....|.+|+.+++.+.|+ +|+++++++......++++||
T Consensus 2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (384)
T COG0515 2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY 79 (384)
T ss_pred ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence 566778999999999999976 7789999975442 2467899999999999988 799999999777778999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+.++++.++++.
T Consensus 80 ~~~~~l~~~~~~ 91 (384)
T COG0515 80 VDGGSLEDLLKK 91 (384)
T ss_pred CCCCcHHHHHHh
Confidence 999999977653
|
|
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00029 Score=62.95 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=49.5
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeeccch--HHHHH----------------------HHHHHHHHhcCCCCC--c
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE--RAFRS----------------------FDSECEVLRNVCHRN--L 492 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~--~~~~~----------------------~~~Ei~~l~~l~H~n--i 492 (524)
.+.||+|+||+||+|...+++.||||.+..... ..... ...|.+.+.++.+.. +
T Consensus 2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~ 81 (187)
T cd05119 2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV 81 (187)
T ss_pred CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 467999999999999987889999999865321 11111 135666666664443 4
Q ss_pred cceeEEEEcCCcceEEEcccCCC
Q 040301 493 IKILSSCSNPDFKALMWGRLLNI 515 (524)
Q Consensus 493 v~l~~~~~~~~~~~lv~e~~~~g 515 (524)
.+.+++ ...++||||+++|
T Consensus 82 ~~~~~~----~~~~lv~e~~~g~ 100 (187)
T cd05119 82 PKPIDL----NRHVLVMEFIGGD 100 (187)
T ss_pred CceEec----CCCEEEEEEeCCC
Confidence 444443 2468999999984
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00022 Score=63.59 Aligned_cols=87 Identities=23% Similarity=0.320 Sum_probs=69.1
Q ss_pred hhccccccCcccCCCCceEEEEE-eCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC-CCccceeEEEEcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH-RNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H-~niv~l~~~~~~~~~~~lv~ 509 (524)
....|..+++||+|+||.+|.|. ..+|..||+|.=..... ..+...|.++.+.++| ..|..+..|..+..+-.+||
T Consensus 13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~--hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM 90 (341)
T KOG1163|consen 13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK--HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM 90 (341)
T ss_pred eccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC--CcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence 34679999999999999999999 47899999997644332 1345678888888865 57778888888889999999
Q ss_pred cccCCCCHHHHH
Q 040301 510 GRLLNISITIIR 521 (524)
Q Consensus 510 e~~~~gsL~~~l 521 (524)
|.. |-||+++.
T Consensus 91 dLL-GPsLEdLf 101 (341)
T KOG1163|consen 91 DLL-GPSLEDLF 101 (341)
T ss_pred ecc-CccHHHHH
Confidence 977 55888865
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00048 Score=57.26 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=31.1
Q ss_pred cccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 040301 120 EIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199 (524)
Q Consensus 120 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 199 (524)
.|.+..+|+.+.+.. .+..+....|..+++|+.+.+..+ +...-...|..+++++.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344445555555542 344344445555555555555443 3323333444444455555533 2222223334444455
Q ss_pred CEEEccC
Q 040301 200 RELHLGS 206 (524)
Q Consensus 200 ~~L~l~~ 206 (524)
+.+++..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5555433
|
|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00042 Score=67.78 Aligned_cols=87 Identities=23% Similarity=0.317 Sum_probs=68.1
Q ss_pred cccccCcccCCCCceEEEEEeCCC--CEEEEEEeeccchHHHHHHHHHHHHHhcCCC----CCccceeEEE-EcCCcceE
Q 040301 435 EFNECNLLGTGSFGSVYKGTISDW--TNVAIKIFNLQLERAFRSFDSECEVLRNVCH----RNLIKILSSC-SNPDFKAL 507 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~~~--~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H----~niv~l~~~~-~~~~~~~l 507 (524)
.|.+.+.||+|+||.||.+..... ..+|+|.-..........+..|+.++..+.+ +++.++++.. ..+.+.||
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i 98 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI 98 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence 799999999999999999996432 4688887765432222267889999988873 6888999888 47788999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||+.+ |-+|.++.+
T Consensus 99 VM~l~-G~sL~dl~~ 112 (322)
T KOG1164|consen 99 VMSLL-GPSLEDLRK 112 (322)
T ss_pred EEecc-CccHHHHHH
Confidence 99965 679998764
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00011 Score=78.27 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=15.3
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTW 53 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~ 53 (524)
+++..++.+.......-....... |++|.|.+
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGn 92 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGN 92 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcc
Confidence 555555555555433322223333 66666654
|
|
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00021 Score=70.52 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=70.4
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC------CCCccceeEEEEcCCcceE
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC------HRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~------H~niv~l~~~~~~~~~~~l 507 (524)
.|.+....|+|-|+.|.+|.. ..|+.||||+|...-. ..+.=++|+++|++++ --++++++..|.....+||
T Consensus 433 RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~-M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLCl 511 (752)
T KOG0670|consen 433 RYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV-MHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCL 511 (752)
T ss_pred eeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH-HhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEE
Confidence 577777889999999999996 4678999999965321 2233457999999985 2378999999999999999
Q ss_pred EEcccCCCCHHHHHHhC
Q 040301 508 MWGRLLNISITIIRRHL 524 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~~ 524 (524)
|||-+. -+|.+.|+++
T Consensus 512 VFE~Ls-lNLRevLKKy 527 (752)
T KOG0670|consen 512 VFEPLS-LNLREVLKKY 527 (752)
T ss_pred Eehhhh-chHHHHHHHh
Confidence 999776 5999999864
|
|
| >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=61.15 Aligned_cols=82 Identities=9% Similarity=0.090 Sum_probs=60.4
Q ss_pred Cccc-CCCCceEEEEEeCCCCEEEEEEeeccc-------------hHHHHHHHHHHHHHhcCCCCCc--cceeEEEEcCC
Q 040301 440 NLLG-TGSFGSVYKGTISDWTNVAIKIFNLQL-------------ERAFRSFDSECEVLRNVCHRNL--IKILSSCSNPD 503 (524)
Q Consensus 440 ~~ig-~g~~g~v~~~~~~~~~~vavK~~~~~~-------------~~~~~~~~~Ei~~l~~l~H~ni--v~l~~~~~~~~ 503 (524)
..+| .|+.|+||.+... +..+++|.+.... ......+.+|++++.++.|++| ++.+++.....
T Consensus 37 ~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~ 115 (239)
T PRK01723 37 RVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH 115 (239)
T ss_pred ceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence 4677 8899999998874 6788999885421 0123567899999999998875 67777654432
Q ss_pred -c---ceEEEcccCC-CCHHHHHH
Q 040301 504 -F---KALMWGRLLN-ISITIIRR 522 (524)
Q Consensus 504 -~---~~lv~e~~~~-gsL~~~l~ 522 (524)
. .++||||++| ++|.++++
T Consensus 116 ~~~~~~~lV~e~l~G~~~L~~~l~ 139 (239)
T PRK01723 116 GLFYRADILIERIEGARDLVALLQ 139 (239)
T ss_pred CcceeeeEEEEecCCCCCHHHHHh
Confidence 2 2599999997 69988765
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=2.3e-05 Score=71.04 Aligned_cols=100 Identities=21% Similarity=0.210 Sum_probs=59.0
Q ss_pred ccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccC-Cccc
Q 040301 43 LRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNI-PQEI 121 (524)
Q Consensus 43 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~ 121 (524)
+.+.+.|++.++.|+++ ....+++.|++|.|+-|.|+..-| +.... +|++|+|..|.|.+.. -.-+
T Consensus 18 l~~vkKLNcwg~~L~DI----------sic~kMp~lEVLsLSvNkIssL~p--l~rCt-rLkElYLRkN~I~sldEL~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI----------SICEKMPLLEVLSLSVNKISSLAP--LQRCT-RLKELYLRKNCIESLDELEYL 84 (388)
T ss_pred HHHhhhhcccCCCccHH----------HHHHhcccceeEEeeccccccchh--HHHHH-HHHHHHHHhcccccHHHHHHH
Confidence 44566677777777665 445566677777777777764433 33443 6666666666664311 1224
Q ss_pred cCCCCCCeEEcccCcCcccCCc-----cccCCCCCCeEe
Q 040301 122 GNLRGLTLLSLFNNDLNGTISP-----TMGRLKQLRGLS 155 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~ 155 (524)
.++++|+.|.|..|.-.+..+. .+.-+|+|++||
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5677777777777766544332 234466666664
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00031 Score=63.59 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=49.0
Q ss_pred CCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccC--cccccCCccccCCCCCCEEEccCCcccccCCcc--
Q 040301 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYN--NLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPC-- 192 (524)
Q Consensus 117 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-- 192 (524)
+......+..|+.|++.+..++.. ..|-.+++|++|.++.| ++.+.++-....+|+|++|++++|+++. .++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 344444556666666666666522 23445667777777777 4544444444445666666666666652 111
Q ss_pred -ccCCCCCCEEEccCCcCC
Q 040301 193 -LASLTSLRELHLGSNKLT 210 (524)
Q Consensus 193 -~~~l~~L~~L~l~~n~l~ 210 (524)
+..+.+|..|++.+|..+
T Consensus 111 pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcchhhhhcccCCcc
Confidence 233445555566555544
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=2.7e-05 Score=70.61 Aligned_cols=99 Identities=23% Similarity=0.245 Sum_probs=68.5
Q ss_pred CCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEE
Q 040301 196 LTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETL 273 (524)
Q Consensus 196 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L 273 (524)
+.+.+.|++-++.+..+ .....++.|+.|.|+-|+|+.. ..+..+.+|++|+|..|.|.++. ..+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34566667777766532 4456677788888888877643 33667788888888888887665 567788888888
Q ss_pred EccCCcccCCCccc-----ccCCCCCCEEe
Q 040301 274 SLASNQFQGPIPES-----VGSLISLESLD 298 (524)
Q Consensus 274 ~L~~N~l~~~~~~~-----~~~l~~L~~L~ 298 (524)
.|..|+..+..+.. +.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888877665433 34567777665
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00046 Score=74.88 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=65.9
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC---CCCccceeEEEEcCCc
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC---HRNLIKILSSCSNPDF 504 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~---H~niv~l~~~~~~~~~ 504 (524)
+.+..-..|.+...+|+|+||.||.|...+|+.||+|.-++... -+|.-=-+++.|++ -+.|+.+..++.-.+.
T Consensus 692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~---WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~ 768 (974)
T KOG1166|consen 692 EFEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP---WEFYICLQVMERLKPQMLPSIMHISSAHVFQNA 768 (974)
T ss_pred eeeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCc---eeeeehHHHHHhhchhhhcchHHHHHHHccCCc
Confidence 34445567888999999999999999987799999998765432 11111123344444 2345555666666788
Q ss_pred ceEEEcccCCCCHHHHHH
Q 040301 505 KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~ 522 (524)
-++|+||.+.|+|.+++.
T Consensus 769 S~lv~ey~~~Gtlld~~N 786 (974)
T KOG1166|consen 769 SVLVSEYSPYGTLLDLIN 786 (974)
T ss_pred ceeeeeccccccHHHhhc
Confidence 899999999999999874
|
|
| >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0014 Score=60.17 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=61.5
Q ss_pred CcccCCCCceEEEEEeCCCCEEEEEEeeccch-HHHHHHHHHHHHHhcCCC--CCccceeEEEEcCC---cceEEEcccC
Q 040301 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCH--RNLIKILSSCSNPD---FKALMWGRLL 513 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H--~niv~l~~~~~~~~---~~~lv~e~~~ 513 (524)
+.++.|..+.+|++...+|..+++|....... ....++.+|++++..+.+ .++.+++++..... ..++||||++
T Consensus 4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~ 83 (223)
T cd05154 4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD 83 (223)
T ss_pred eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence 46889999999999986667899998754321 134567899999999875 44677777776542 5689999999
Q ss_pred CCCHHHH
Q 040301 514 NISITII 520 (524)
Q Consensus 514 ~gsL~~~ 520 (524)
|+++.+.
T Consensus 84 G~~l~~~ 90 (223)
T cd05154 84 GRVLRDR 90 (223)
T ss_pred CEecCCC
Confidence 9887654
|
This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain |
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.003 Score=59.26 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=66.2
Q ss_pred ccccccCcccCCCCceEEEEE-eCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
-.|.+.++||+|+||+.+.|+ +-+++.||||-=+... ...+...|.+..+.+ .-+.|...|.+-..+.+-.||+|.
T Consensus 28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS--~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL 105 (449)
T KOG1165|consen 28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS--EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL 105 (449)
T ss_pred ccceeccccccCcceeeecccccccCceEEEEeccccC--CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence 468999999999999999999 5578999999654332 234455677777766 468888888777778888999997
Q ss_pred cCCCCHHHHH
Q 040301 512 LLNISITIIR 521 (524)
Q Consensus 512 ~~~gsL~~~l 521 (524)
+ |-||+|+.
T Consensus 106 L-GPSLEDLF 114 (449)
T KOG1165|consen 106 L-GPSLEDLF 114 (449)
T ss_pred h-CcCHHHHH
Confidence 7 56888865
|
|
| >cd05151 ChoK Choline Kinase (ChoK) | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0045 Score=54.10 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=54.3
Q ss_pred CcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCcc-ceeEEEEcCCcceEEEcccCCCCHH
Q 040301 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI-KILSSCSNPDFKALMWGRLLNISIT 518 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv-~l~~~~~~~~~~~lv~e~~~~gsL~ 518 (524)
+.++.|.++.||+++.. +..+++|....... ....+.+|++++..+.+.+++ +++++. .+..++||||++|.++.
T Consensus 4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l~ 79 (170)
T cd05151 4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSELL 79 (170)
T ss_pred eecCCcccCceEEEEEC-CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCccc
Confidence 46788999999999874 67899998754431 123467899999888665554 444433 33468999999998876
Q ss_pred H
Q 040301 519 I 519 (524)
Q Consensus 519 ~ 519 (524)
+
T Consensus 80 ~ 80 (170)
T cd05151 80 T 80 (170)
T ss_pred c
Confidence 3
|
The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0017 Score=35.15 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=15.0
Q ss_pred CccEEEccCCcccccCCccccc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGN 42 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~ 42 (524)
+|+.|||++|+|+ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 5777888888887 66666654
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0025 Score=59.46 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=65.0
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------Cc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------DF 504 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------~~ 504 (524)
..|.....+|.|.= .|..+.. -.++.||+|++.... ....+...+|..++..+.|+||++++.++... .+
T Consensus 17 ~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e 95 (369)
T KOG0665|consen 17 KRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQE 95 (369)
T ss_pred eeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHh
Confidence 34666677777766 4554543 357889999885432 33466778999999999999999999999764 35
Q ss_pred ceEEEcccCCCCHHHHHH
Q 040301 505 KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~ 522 (524)
+|+|||||. ++|.+.+.
T Consensus 96 ~y~v~e~m~-~nl~~vi~ 112 (369)
T KOG0665|consen 96 VYLVMELMD-ANLCQVIL 112 (369)
T ss_pred HHHHHHhhh-hHHHHHHH
Confidence 799999997 58887763
|
|
| >COG0661 AarF Predicted unusual protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.023 Score=58.47 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=55.2
Q ss_pred CcccCCCCceEEEEEeCCCCEEEEEEeeccchHHH------------------------------H----------HHHH
Q 040301 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAF------------------------------R----------SFDS 479 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~------------------------------~----------~~~~ 479 (524)
..++.++.|+||+|++++|+.||||+..+.-.... + ++.+
T Consensus 131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~ 210 (517)
T COG0661 131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR 210 (517)
T ss_pred CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence 68899999999999999999999999976431110 0 1455
Q ss_pred HHHHHhcC----CCCCccceeEEEEc-CCcceEEEcccCCCCHHHH
Q 040301 480 ECEVLRNV----CHRNLIKILSSCSN-PDFKALMWGRLLNISITII 520 (524)
Q Consensus 480 Ei~~l~~l----~H~niv~l~~~~~~-~~~~~lv~e~~~~gsL~~~ 520 (524)
|...+.++ .+..-++.-..|.+ .....|+|||++|-.+.+.
T Consensus 211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~ 256 (517)
T COG0661 211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDI 256 (517)
T ss_pred HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccH
Confidence 55555443 23333334444443 4567899999999877765
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.28 E-value=9.3e-05 Score=75.30 Aligned_cols=89 Identities=25% Similarity=0.235 Sum_probs=47.7
Q ss_pred CCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc----CcccccEEEeccCccccc----C
Q 040301 46 LSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN----FSASFQNFYAFNCKLKGN----I 117 (524)
Q Consensus 46 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~~~~L~~L~l~~n~l~~~----~ 117 (524)
+..|.|.+|.+..-. .-.+...+.....|+.|++++|++....-..+.+ ....++.|++..|.+++. +
T Consensus 89 l~~L~L~~~~l~~~~----~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRG----AEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccch----HHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence 666777777776532 1111144556677777777777777432222221 111455566666655442 3
Q ss_pred CccccCCCCCCeEEcccCcCc
Q 040301 118 PQEIGNLRGLTLLSLFNNDLN 138 (524)
Q Consensus 118 ~~~~~~l~~L~~L~l~~n~l~ 138 (524)
.+.+.....++.++++.|.+.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHhcccchhHHHHHhcccc
Confidence 344445566666666666663
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.0014 Score=67.95 Aligned_cols=174 Identities=18% Similarity=0.108 Sum_probs=86.0
Q ss_pred ccCCCEEEccccc-cCCCCCCccccCccccCCCCCCCCEEEccCC-CCCCCC---ChhHhcCcccccEEEeccCc-cccc
Q 040301 43 LRHLSSLLLTWNN-LTTESSLADQWSFLSALTNCRHLKALSLGSN-PLGGIL---PPVIGNFSASFQNFYAFNCK-LKGN 116 (524)
Q Consensus 43 l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~~~~~~~~L~~L~l~~n~-l~~~ 116 (524)
.+.|+.|.+..+. ++... ........++|+.|+++++ ...... ...+.....+|+.|+++.+. ++..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred CchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence 5677777777663 32210 0034456677777777763 111111 11233322477777777776 4433
Q ss_pred CCccccC-CCCCCeEEcccCc-CcccC-CccccCCCCCCeEecccCcccc--cCCccccCCCCCCEEEccCCcccccCCc
Q 040301 117 IPQEIGN-LRGLTLLSLFNND-LNGTI-SPTMGRLKQLRGLSLKYNNLEG--SIPYDLCHLKLMYGIRLTGNKLSGHIPP 191 (524)
Q Consensus 117 ~~~~~~~-l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 191 (524)
.-..++. +++|+.|.+.++. ++..- ......++.|++|+++++.... .+......+++++.|.+....-
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------ 333 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------ 333 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC------
Confidence 3333332 6778888876666 44221 1223456778888888776531 1222234455555544332211
Q ss_pred cccCCCCCCEEEccCCcC---CCccChhccCCCCCCEEEcCCCcC
Q 040301 192 CLASLTSLRELHLGSNKL---TSSIPSSLWSLEYILMINLSSNSL 233 (524)
Q Consensus 192 ~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l 233 (524)
+..++.+.+..... .....-....+++++.+.+..+..
T Consensus 334 ----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 334 ----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred ----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 23333333332221 112223455667777777766663
|
|
| >COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.067 Score=46.17 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=56.3
Q ss_pred cccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCCC
Q 040301 437 NECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNIS 516 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gs 516 (524)
.....+++|.+|.||.|.+. +..+|+|.-...+ ....+..|.+++..+...++.+=+..+ +..++.|||.+|-.
T Consensus 25 ~v~~~L~KG~~s~Vyl~~~~-~~~~a~Kvrr~ds--~r~~l~kEakiLeil~g~~~~p~vy~y---g~~~i~me~i~G~~ 98 (201)
T COG2112 25 RVEKELAKGTTSVVYLGEWR-GGEVALKVRRRDS--PRRNLEKEAKILEILAGEGVTPEVYFY---GEDFIRMEYIDGRP 98 (201)
T ss_pred hhhhhhhcccccEEEEeecc-CceEEEEEecCCc--chhhHHHHHHHHHHhhhcCCCceEEEe---chhhhhhhhhcCcc
Confidence 44568999999999999984 4588888765433 356788999999988877766433222 23345599999877
Q ss_pred HHHH
Q 040301 517 ITII 520 (524)
Q Consensus 517 L~~~ 520 (524)
|.++
T Consensus 99 L~~~ 102 (201)
T COG2112 99 LGKL 102 (201)
T ss_pred hhhh
Confidence 7654
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.0011 Score=63.98 Aligned_cols=276 Identities=18% Similarity=0.098 Sum_probs=130.4
Q ss_pred CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCC-CCCChhHhcCcccccEEEeccC-cccccCCc-cc
Q 040301 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLG-GILPPVIGNFSASFQNFYAFNC-KLKGNIPQ-EI 121 (524)
Q Consensus 45 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~ 121 (524)
.|++|.+++++-.....+ -....+.+++++|++.++... ...-..+.+...+|+.|++-.| .++...-. --
T Consensus 139 ~lk~LSlrG~r~v~~ssl------rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSL------RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccccccCCcchh------hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 478888877755443321 133356778888888777632 2223345555557777777774 33332222 22
Q ss_pred cCCCCCCeEEcccCcCccc--CCccccCCCCCCeEecccCccccc--CCccccCCCCCCEEEccCCc-ccccC-CccccC
Q 040301 122 GNLRGLTLLSLFNNDLNGT--ISPTMGRLKQLRGLSLKYNNLEGS--IPYDLCHLKLMYGIRLTGNK-LSGHI-PPCLAS 195 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~ 195 (524)
...++|++|+++.+.-... +.....++..++.+.+.+|.-.+. +-..-.....+..+++..+. +++.. ...-..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 4567777777777643211 111234455555555554321110 00011222334444443332 22110 000122
Q ss_pred CCCCCEEEccCCcC-CCccC-hhccCCCCCCEEEcCCCc-CcccCCcCc-cCCCCCCEEEcCCCcCcccc---ccccccC
Q 040301 196 LTSLRELHLGSNKL-TSSIP-SSLWSLEYILMINLSSNS-LNDSLPSNI-QTLKVLRVLDLSRNQLSGDI---STIGALV 268 (524)
Q Consensus 196 l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~---~~~~~l~ 268 (524)
+..|+.|+.+++.- +...- .--.+.++|+.+-+.+++ +++.--..+ .+.+.|+.+++......... ..-..++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 45566666665432 21111 122345667777776664 222111111 24566666666655432111 2223556
Q ss_pred CCCEEEccCCcccCCC-----cccccCCCCCCEEeCCCCcCC-CCCcccccCCCCCCeEEccCC
Q 040301 269 DLETLSLASNQFQGPI-----PESVGSLISLESLDLSGNNLS-GKIPKSLETLSHLKQFNASHN 326 (524)
Q Consensus 269 ~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~l~l~~n 326 (524)
.|+.|.|+.+...... ...-..+..|+.+.+++++.. ...-+.+..+++|+.+++-+.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 6777777766432111 111133456677777777643 222344555666666665443
|
|
| >KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.036 Score=55.52 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=55.6
Q ss_pred CCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCcceEEEcccCC-CCHHH
Q 040301 446 SFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDFKALMWGRLLN-ISITI 519 (524)
Q Consensus 446 ~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~~lv~e~~~~-gsL~~ 519 (524)
.-.+.|+++. .+|..|+.|++.....+.......-++..+++.|+|+|++.+++.+ +..+++||+|.++ ++|.+
T Consensus 288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d 367 (655)
T KOG3741|consen 288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYD 367 (655)
T ss_pred ccceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHH
Confidence 3446899995 5899999999954333223333455788999999999999998874 3468999999997 56655
Q ss_pred H
Q 040301 520 I 520 (524)
Q Consensus 520 ~ 520 (524)
+
T Consensus 368 ~ 368 (655)
T KOG3741|consen 368 L 368 (655)
T ss_pred H
Confidence 4
|
|
| >KOG1235 consensus Predicted unusual protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.045 Score=56.25 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=53.3
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeeccchHH-------------------------------HH------HHHHHH
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERA-------------------------------FR------SFDSEC 481 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~-------------------------------~~------~~~~Ei 481 (524)
.+.||.-+.|+||+|++++|+.||||+.++.-+.. .+ +|.+|.
T Consensus 166 ~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA 245 (538)
T KOG1235|consen 166 EEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA 245 (538)
T ss_pred cchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence 36889999999999999999999999987643111 00 256666
Q ss_pred HHHhc----CCCCC------ccceeEEEEcCCcceEEEcccCCCCHHH
Q 040301 482 EVLRN----VCHRN------LIKILSSCSNPDFKALMWGRLLNISITI 519 (524)
Q Consensus 482 ~~l~~----l~H~n------iv~l~~~~~~~~~~~lv~e~~~~gsL~~ 519 (524)
+...+ +.|-+ |.+++..+ .....|+||||+|.-+.|
T Consensus 246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~~--st~RVLtME~~~G~~i~D 291 (538)
T KOG1235|consen 246 KNAERFRENFKDFSLLTYVLVPKVYWDL--STKRVLTMEYVDGIKIND 291 (538)
T ss_pred HhHHHHHHHHHhcccccceeCCeehhhc--CcceEEEEEecCCccCCC
Confidence 54333 34555 33333332 346789999999987654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 524 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 3e-23 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-05 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 4e-23 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-05 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-21 | ||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 1e-10 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 7e-10 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 4e-06 | ||
| 4fmz_A | 347 | Crystal Structure Of An Internalin (Inlf) From List | 6e-06 | ||
| 2oib_A | 301 | Crystal Structure Of Irak4 Kinase Domain Apo Form L | 6e-06 | ||
| 2nru_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 7e-06 | ||
| 2nry_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 7e-06 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 8e-06 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 8e-06 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 5e-05 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 6e-05 | ||
| 2o8y_A | 298 | Apo Irak4 Kinase Domain Length = 298 | 6e-05 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 8e-05 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 9e-05 | ||
| 3hgk_A | 327 | Crystal Structure Of Effect Protein Avrptob Complex | 2e-04 | ||
| 2qkw_B | 321 | Structural Basis For Activation Of Plant Immunity B | 3e-04 | ||
| 2r4b_A | 321 | Erbb4 Kinase Domain Complexed With A Thienopyrimidi | 6e-04 | ||
| 4g9r_A | 307 | B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr | 8e-04 | ||
| 3d4q_A | 307 | Pyrazole-Based Inhibitors Of B-Raf Kinase Length = | 8e-04 | ||
| 3ii5_A | 306 | The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi | 9e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301 | Back alignment and structure |
|
| >pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327 | Back alignment and structure |
|
| >pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321 | Back alignment and structure |
|
| >pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321 | Back alignment and structure |
|
| >pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307 | Back alignment and structure |
|
| >pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307 | Back alignment and structure |
|
| >pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 524 | |||
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 5e-77 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 4e-48 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 1e-32 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 3e-16 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 4e-73 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 6e-70 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 2e-68 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-66 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 2e-65 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-61 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 3e-49 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-07 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 1e-49 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 4e-44 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 1e-43 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 2e-43 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 5e-35 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 9e-31 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 3e-19 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 1e-10 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-49 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-47 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 7e-47 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 1e-44 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 1e-43 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 9e-39 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 8e-33 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 1e-22 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 5e-09 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 7e-44 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-43 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-43 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-40 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 1e-39 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-38 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 9e-31 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 7e-23 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 1e-19 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 1e-41 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 1e-37 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-37 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 5e-31 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 1e-30 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 5e-28 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 4e-41 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 2e-36 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 2e-33 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 6e-29 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 2e-16 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-39 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 3e-39 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 8e-39 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-31 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 1e-26 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 3e-36 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 4e-34 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 8e-32 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 5e-28 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 8e-24 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 7e-22 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 7e-18 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 2e-34 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 2e-26 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 1e-25 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 6e-19 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 2e-33 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 7e-32 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 6e-30 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 2e-27 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 2e-24 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 2e-24 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 3e-09 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 4e-31 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 9e-27 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 1e-19 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 1e-29 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 4e-24 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 5e-17 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 4e-29 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 1e-27 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 1e-16 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 4e-15 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 1e-12 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 1e-28 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 1e-26 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 5e-25 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 2e-18 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 3e-13 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 6e-28 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 1e-25 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 2e-25 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 1e-24 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 6e-19 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 1e-17 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 3e-11 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 9e-28 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 1e-23 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 3e-23 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 4e-13 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 2e-27 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 4e-26 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 6e-26 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 5e-21 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 1e-15 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 8e-15 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 6e-11 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 1e-04 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-26 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 6e-25 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-24 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-23 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 1e-22 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 1e-18 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 1e-18 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-12 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 8e-26 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 2e-24 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 2e-24 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 2e-19 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 1e-14 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 1e-10 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 9e-26 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 1e-08 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-25 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 4e-24 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 1e-23 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 1e-18 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-16 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 1e-14 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 4e-24 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 3e-20 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 4e-24 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 1e-23 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 1e-21 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 7e-24 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 9e-20 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 1e-19 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 2e-23 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 3e-20 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 6e-10 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 7e-08 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 3e-22 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 6e-22 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 1e-15 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 6e-11 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 1e-21 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 2e-17 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 6e-16 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 3e-12 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 1e-10 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 1e-21 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 4e-20 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 2e-21 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 4e-20 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 3e-15 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 9e-07 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 8e-06 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 4e-21 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 1e-18 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 1e-16 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 6e-16 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 3e-13 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 8e-13 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 4e-05 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 5e-21 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 3e-18 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 7e-09 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 5e-21 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 3e-18 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 1e-17 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 3e-11 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 7e-21 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 4e-05 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 1e-20 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 2e-20 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 7e-05 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 2e-04 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-20 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-19 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 6e-18 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 3e-16 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 4e-13 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-10 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 4e-10 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 8e-09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 3e-19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 6e-09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 3e-06 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 1e-18 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 9e-15 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 4e-18 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 6e-13 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 1e-10 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 8e-09 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 9e-09 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 5e-07 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 1e-17 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 2e-17 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 4e-17 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 3e-15 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 3e-07 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 2e-17 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 4e-17 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 1e-13 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 9e-12 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 2e-16 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 6e-16 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 2e-15 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 2e-12 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 5e-12 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 4e-15 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 2e-13 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 3e-12 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 2e-09 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 7e-06 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 5e-15 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 5e-13 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 9e-13 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 4e-09 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 6e-15 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 1e-13 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 3e-11 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 2e-14 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 9e-10 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 2e-09 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 3e-13 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 4e-13 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 1e-07 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 1e-11 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 2e-11 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 2e-11 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 2e-11 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 3e-09 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 2e-11 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 1e-06 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 4e-11 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 3e-10 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 9e-09 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 3e-08 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 4e-04 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 6e-11 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 2e-10 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 8e-11 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 9e-11 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 1e-10 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 2e-10 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 2e-10 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 3e-10 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 3e-10 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 3e-07 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 1e-04 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 4e-10 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 5e-10 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 6e-10 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 6e-09 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 7e-08 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 2e-07 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 2e-09 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 3e-09 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 3e-08 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 7e-09 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 7e-08 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 3e-04 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 4e-04 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-08 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 1e-07 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 1e-06 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 4e-06 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 8e-04 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 2e-08 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 2e-08 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 2e-08 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 4e-08 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 1e-06 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 3e-04 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 9e-04 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 6e-08 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 6e-08 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 6e-08 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 4e-06 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 5e-06 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 2e-05 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 1e-04 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 7e-08 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 7e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 1e-07 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 1e-07 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 2e-07 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 3e-07 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 3e-07 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 4e-07 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 4e-07 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 5e-07 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 5e-07 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 1e-04 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 2e-04 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 5e-07 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 7e-07 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 1e-06 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 6e-07 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 6e-07 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 7e-07 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 7e-07 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 8e-07 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 8e-07 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 4e-05 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 1e-04 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 9e-07 | |
| 3v5q_A | 297 | NT-3 growth factor receptor; kinase domain, kinase | 1e-06 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 1e-06 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 2e-06 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 2e-06 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 2e-06 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 3e-06 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 5e-06 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 5e-06 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 5e-06 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 6e-06 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 6e-06 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 6e-06 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 6e-06 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 6e-06 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 7e-06 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 7e-06 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 7e-06 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 7e-06 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 7e-06 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 8e-06 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 8e-06 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 9e-06 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 1e-05 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 1e-05 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 1e-05 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 1e-05 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 1e-05 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 1e-05 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 1e-05 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 1e-05 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 1e-05 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 2e-05 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 2e-05 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 2e-05 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 2e-05 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 2e-05 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 2e-05 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 2e-05 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 2e-05 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 2e-05 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 2e-05 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 2e-05 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 3e-05 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 3e-05 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 3e-05 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 3e-05 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 3e-05 | |
| 4apc_A | 350 | Serine/threonine-protein kinase NEK1; transferase; | 3e-05 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 3e-05 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 4e-05 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 4e-05 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 4e-05 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 4e-05 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 4e-05 | |
| 3zzw_A | 289 | Tyrosine-protein kinase transmembrane receptor RO; | 5e-05 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 5e-05 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 5e-05 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 5e-05 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 5e-05 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 5e-05 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 6e-05 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 8e-04 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 7e-05 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 7e-05 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 7e-05 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 7e-05 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 7e-05 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 9e-05 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 9e-05 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 9e-05 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 1e-04 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 1e-04 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 1e-04 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 2e-04 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 2e-04 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 2e-04 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 2e-04 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 2e-04 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 2e-04 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 2e-04 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 2e-04 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 2e-04 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 3e-04 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 3e-04 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 3e-04 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 3e-04 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 4e-04 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 4e-04 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 5e-04 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 5e-04 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 7e-04 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 8e-04 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 9e-04 |
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 243 bits (624), Expect = 5e-77
Identities = 88/340 (25%), Positives = 137/340 (40%), Gaps = 61/340 (17%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
D + ++ G + +T +++L L+ NL + S+L N +L L +G
Sbjct: 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI------PSSLANLPYLNFLYIGG 85
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
L G IP I L L L + + +++G I +
Sbjct: 86 IN------------------------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE-LHL 204
++K L L YN L G++P + L + GI GN++SG IP S + L + +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-ST 263
N+LT IP + +L L +DLSRN L GD
Sbjct: 182 SRNRLTGKIPPTFANLN-------------------------LAFVDLSRNMLEGDASVL 216
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
G+ + + + LA N + VG +L LDL N + G +P+ L L L N
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 324 SHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPC 363
S N L G+I G+ + F ++ N LCG P +P C
Sbjct: 276 SFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP---LPAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 4e-48
Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 10/225 (4%)
Query: 117 IPQEIGNLRGL----TLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGS--IPYDLC 170
I +++GN L N G + T + ++ L L NL IP L
Sbjct: 14 IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73
Query: 171 HLKLMYGIRLTG-NKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLS 229
+L + + + G N L G IPP +A LT L L++ ++ +IP L ++ ++ ++ S
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 230 SNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLET-LSLASNQFQGPIPES 287
N+L+ +LP +I +L L + N++SG I + G+ L T ++++ N+ G IP +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
+L +L +DLS N L G + + ++ + + N L +
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-32
Identities = 48/209 (22%), Positives = 79/209 (37%), Gaps = 35/209 (16%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+D S N+ SG +P + +L +L + N ++
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-------------------------- 162
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
G +P G+FS F + +L G IP NL L + L N L G S
Sbjct: 163 ------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
G K + + L N+L + + K + G+ L N++ G +P L L L L+
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNS 232
+ N L IP +L+ + ++N
Sbjct: 275 VSFNNLCGEIPQGG-NLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 35/147 (23%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+DLS N G FG+ ++ + L N+L + L + ++L L L
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD---------LGKVGLSKNLNGLDL 251
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
+N ++ G +PQ + L+ L L++ N+L G I P
Sbjct: 252 RNN-------------------------RIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-P 285
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLC 170
G L++ + N P C
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLPAC 312
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 245 bits (629), Expect = 4e-73
Identities = 87/314 (27%), Positives = 142/314 (45%), Gaps = 15/314 (4%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+D+S N SG L L ++ N + L+ LSL
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----------PLKSLQYLSL 276
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N G +P + + G +P G+ L L+L +N+ +G +
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 144 -TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKL-MYGIRLTGNKLSGHIPP--CLASLTSL 199
T+ +++ L+ L L +N G +P L +L + + L+ N SG I P C +L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG 259
+EL+L +N T IP +L + ++ ++LS N L+ ++PS++ +L LR L L N L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 260 DI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318
+I + + LETL L N G IP + + +L + LS N L+G+IPK + L +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 319 KQFNASHNRLEGKI 332
S+N G I
Sbjct: 517 AILKLSNNSFSGNI 530
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 6e-70
Identities = 102/322 (31%), Positives = 144/322 (44%), Gaps = 14/322 (4%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+DLS N F G +P FG+ L SL L+ NN + E + L R LK L L
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-------MDTLLKMRGLKVLDL 350
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGN--LRGLTLLSLFNNDLNGTI 141
N G LP + N SAS + G I + L L L NN G I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 142 SPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201
PT+ +L L L +N L G+IP L L + ++L N L G IP L + +L
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261
L L N LT IPS L + + I+LS+N L +P I L+ L +L LS N SG+I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 262 -STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQ 320
+ +G L L L +N F G IP ++ S ++ N ++GK ++ K+
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 321 FNASHNRLEGKILVKGSFKNFS 342
+ + N LE + + S
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLS 608
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 2e-68
Identities = 101/318 (31%), Positives = 150/318 (47%), Gaps = 23/318 (7%)
Query: 24 VMDLSSNSFSGHIPNTF---GNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKA 80
V+DLS+NS SG + L L ++ N ++ + ++ C +L+
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS----------RCVNLEF 204
Query: 81 LSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT 140
L + SN + P +G+ S + Q+ KL G+ + I L LL++ +N G
Sbjct: 205 LDVSSNNFSTGI-PFLGDCS-ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 141 ISPTMGRLKQLRGLSLKYNNLEGSIPYDLCH-LKLMYGIRLTGNKLSGHIPPCLASLTSL 199
I P LK L+ LSL N G IP L + G+ L+GN G +PP S + L
Sbjct: 263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 200 RELHLGSNKLTSSIP-SSLWSLEYILMINLSSNSLNDSLPSNIQTLKV-LRVLDLSRNQL 257
L L SN + +P +L + + +++LS N + LP ++ L L LDLS N
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 258 SGDI-STIG--ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLET 314
SG I + L+ L L +N F G IP ++ + L SL LS N LSG IP SL +
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 315 LSHLKQFNASHNRLEGKI 332
LS L+ N LEG+I
Sbjct: 441 LSKLRDLKLWLNMLEGEI 458
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 1e-66
Identities = 94/328 (28%), Positives = 149/328 (45%), Gaps = 23/328 (7%)
Query: 16 SIPHQIY-----WVMDLSSNSFSGHIP-NTFGNLRHLSSLLLTWNNLTTESSLADQWSFL 69
++P + LSSN+FSG +P +T +R L L L++N +
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--------ELP 360
Query: 70 SALTNCR-HLKALSLGSNPLGGILPPVIGNFSASF-QNFYAFNCKLKGNIPQEIGNLRGL 127
+LTN L L L SN G + P + + Q Y N G IP + N L
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 128 TLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187
L L N L+GTI ++G L +LR L L N LEG IP +L ++K + + L N L+G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247
IP L++ T+L + L +N+LT IP + LE + ++ LS+NS + ++P+ + + L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN--NL 304
LDL+ N +G I + + + +A+N G + + + +GN
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 305 SGKIPKSLETLSHLKQFNASHNRLEGKI 332
G + L LS N + G
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHT 624
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 2e-65
Identities = 86/316 (27%), Positives = 141/316 (44%), Gaps = 18/316 (5%)
Query: 24 VMDLSSNSFSGHIP-NTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALS 82
+++SSN+ + L L L L+ N+++ + C LK L+
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV-----VGWVLSDGCGELKHLA 184
Query: 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS 142
+ N + G + + + + + IP +G+ L L + N L+G S
Sbjct: 185 ISGNKISGDVD--VSRCV-NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFS 240
Query: 143 PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA-SLTSLRE 201
+ +L+ L++ N G IP L Y + L NK +G IP L+ + +L
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLPLK-SLQY-LSLAENKFTGEIPDFLSGACDTLTG 298
Query: 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP-SNIQTLKVLRVLDLSRNQLSGD 260
L L N ++P S + + LSSN+ + LP + ++ L+VLDLS N+ SG+
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 261 I-STIGAL-VDLETLSLASNQFQGPIPESVG--SLISLESLDLSGNNLSGKIPKSLETLS 316
+ ++ L L TL L+SN F GPI ++ +L+ L L N +GKIP +L S
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 317 HLKQFNASHNRLEGKI 332
L + S N L G I
Sbjct: 419 ELVSLHLSFNYLSGTI 434
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 1e-61
Identities = 81/319 (25%), Positives = 139/319 (43%), Gaps = 27/319 (8%)
Query: 26 DLSSNSFS---GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALS 82
DLSS + + ++ +L L SL L+ +++ +S L +L
Sbjct: 56 DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN---------GSVSGFKCSASLTSLD 106
Query: 83 LGSNPLGGILPPV--IGNFSASFQNFYAFNCKLKGNIPQEIG-NLRGLTLLSLFNNDLNG 139
L N L G + + +G+ S + + L G L L +L L N ++G
Sbjct: 107 LSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165
Query: 140 TISPTM---GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASL 196
+L+ L++ N + G + + + + ++ N S IP L
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDC 222
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQ 256
++L+ L + NKL+ ++ + + ++N+SSN +P LK L+ L L+ N+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENK 280
Query: 257 LSGDI--STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPK-SLE 313
+G+I GA L L L+ N F G +P GS LESL LS NN SG++P +L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 314 TLSHLKQFNASHNRLEGKI 332
+ LK + S N G++
Sbjct: 341 KMRGLKVLDLSFNEFSGEL 359
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 3e-49
Identities = 82/352 (23%), Positives = 125/352 (35%), Gaps = 89/352 (25%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+ LS+N +G IP G L +L+ L L+ N+ + + + L +CR L L L
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG--------NIPAELGDCRSLIWLDL 545
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN--GTI 141
+N G +P + S + G I N N L G
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAAN-----FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 142 SPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201
S + RL ++ G + M + ++ N LSG+IP + S+ L
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660
Query: 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261
L+LG N ++ SIP + L+ L +LDLS N+L
Sbjct: 661 LNLGHNDISGSIPDEVGD------------------------LRGLNILDLSSNKLD--- 693
Query: 262 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQF 321
G IP+++ +L L +DLS NNLSG IP+
Sbjct: 694 --------------------GRIPQAMSALTMLTEIDLSNNNLSGPIPEM---------- 723
Query: 322 NASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKN 373
G F+ F F N LCG P +P C ++ +
Sbjct: 724 --------------GQFETFPPAKFLNNPGLCGYP---LPRCDPSNADGYAH 758
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 265 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324
+ ++ S N + S+ SL LESL LS ++++G + + + L + S
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108
Query: 325 HNRLEGKILVKGSFKNFS 342
N L G + S + S
Sbjct: 109 RNSLSGPVTTLTSLGSCS 126
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 1e-49
Identities = 68/337 (20%), Positives = 123/337 (36%), Gaps = 28/337 (8%)
Query: 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALS 82
V++L+ N F L+SL + +N ++ LK L+
Sbjct: 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP--------ELCQKLPMLKVLN 79
Query: 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS 142
L N L + + + + + ++ + L L L +N L+ T
Sbjct: 80 LQHNELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138
Query: 143 PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY--GIRLTGNKLSGHIPPCLASLTSLR 200
T +L+ L+ L L N ++ +L + L+ N++ P C ++ L
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198
Query: 201 ELHLGSNKLTSSIPSSL---WSLEYILMINLSSNSLNDSLPSNIQTLKV--LRVLDLSRN 255
L L + +L S+ L + I ++LS++ L+ + + LK L +LDLS N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Query: 256 QLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN---------NLS 305
L+ + L LE L N Q S+ L ++ L+L + +L
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Query: 306 GKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
S + L L+ N N + G + F
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPG--IKSNMFTGLI 353
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 4e-44
Identities = 66/340 (19%), Positives = 113/340 (33%), Gaps = 29/340 (8%)
Query: 24 VMDLSSNSFSGHIPNTFG--NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKAL 81
+ LS+N L L L+ N + S L L
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP--------GCFHAIGRLFGL 200
Query: 82 SLGSNPLGGILPPVIGNFSA--SFQNFYAFNCKLKGNIPQEIGNLRG--LTLLSLFNNDL 137
L + LG L + A S +N N +L L+ LT+L L N+L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 138 NGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGN---------KLSGH 188
N + + L QL L+YNN++ + L L + + L + L
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQ----TL 244
L L L++ N + + L + ++LS++ + +N
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380
Query: 245 KVLRVLDLSRNQLSGDIS-TIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGN 302
L +L+L++N++S S L LE L L N+ + L ++ + LS N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Query: 303 NLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
S + L++ L+ F+
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 1e-43
Identities = 66/327 (20%), Positives = 109/327 (33%), Gaps = 30/327 (9%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+L N S TF +L+ L L N++ + + ++L L L
Sbjct: 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN--------NPFVKQKNLITLDLSH 130
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG--NLRGLTLLSLFNNDLNGTISP 143
N L + Q N K++ +E+ L L L +N +
Sbjct: 131 NGLSSTKLGTQVQLE-NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR---LTGNKLSGHIPPCLASL--TS 198
+ +L GL L L S+ LC IR L+ ++LS L T+
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249
Query: 199 LRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258
L L L N L S L + L N++ ++ L +R L+L R+
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 259 GDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318
IS S L LE L++ N++ G L +L
Sbjct: 310 QSIS--------------LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355
Query: 319 KQFNASHNRLEGKILVKGSFKNFSAES 345
K + S++ + L +F + +
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSP 382
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 2e-43
Identities = 76/340 (22%), Positives = 120/340 (35%), Gaps = 29/340 (8%)
Query: 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALS 82
+DLS N S T L +L LLL+ N + S S+L L
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK------LE 177
Query: 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG---NLRGLTLLSLFNNDLNG 139
L SN + P + N +L ++ +++ + LSL N+ L+
Sbjct: 178 LSSNQIKEFSPGCFHAIG-RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 140 TISPTMGRLK--QLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLT 197
T + T LK L L L YNNL L + L N + L L
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
Query: 198 SLRELHLGSN---------KLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLR 248
++R L+L + L S L+ + +N+ N + + L L+
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 249 VLDLSRNQLSGDISTIGALVD-----LETLSLASNQFQGPIPESVGSLISLESLDLSGNN 303
L LS + S T V L L+L N+ ++ L LE LDL N
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 304 LSGKIPKS-LETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
+ ++ L ++ + S+N+ L + SF
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQ--LTRNSFALVP 454
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 5e-35
Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 8/220 (3%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
+P ++ +T+L+L +N L + R QL L + +N + P L ++
Sbjct: 19 VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236
+ L N+LS A T+L ELHL SN + + + ++ ++LS N L+ +
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Query: 237 LPSNIQTLKVLRVLDLSRNQLSG---DISTIGALVDLETLSLASNQFQGPIPESVGSLIS 293
L+ L+ L LS N++ + I A L+ L L+SNQ + P ++
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196
Query: 294 LESLDLSGNNLSGKIPKSL---ETLSHLKQFNASHNRLEG 330
L L L+ L + + L + ++ + S+++L
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 9e-31
Identities = 59/264 (22%), Positives = 92/264 (34%), Gaps = 28/264 (10%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+L+ N S + F L HL L L N + E + ++ + L
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-------QEWRGLENIFEIYLSY 439
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKG--NIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N + S Q LK + P LR LT+L L NN++
Sbjct: 440 NKYLQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+ L++L L L++NNL RL + G L L+ L L+
Sbjct: 499 MLEGLEKLEILDLQHNNLA----------------RLWKHANPGGPIYFLKGLSHLHILN 542
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIST 263
L SN L + +I+L N+LN S L+ L+L +N ++
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
Query: 264 I--GALVDLETLSLASNQFQGPIP 285
+ A +L L + N F
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCE 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 3e-19
Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 10/138 (7%)
Query: 197 TSLRELHLGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253
S KLT +P+++ L NL+ N L +N L LD+
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTNITVL------NLTHNQLRRLPAANFTRYSQLTSLDVG 57
Query: 254 RNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSL 312
N +S + L L+ L+L N+ ++ +L L L N++
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117
Query: 313 ETLSHLKQFNASHNRLEG 330
+L + SHN L
Sbjct: 118 VKQKNLITLDLSHNGLSS 135
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
V D S +L+ + ++ L+L NQ + + L SLD+ N +S
Sbjct: 6 HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 307 KIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
P+ + L LK N HN L L +F +
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCT 97
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 2e-49
Identities = 56/352 (15%), Positives = 114/352 (32%), Gaps = 39/352 (11%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
L SG +P+ G L L L L + L ++ +
Sbjct: 87 SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL----FGPKGISANMSDEQKQKMR 142
Query: 86 NPLGGILPPVIGNFSAS-FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
S + + +I + T + +N++ +S
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKA 201
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG-------------------NKL 185
+ RL +LR + + + + +
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261
Query: 186 SGHIPPCLASLTSLRELHLGSNKLTS--------SIPSSLWSLEYILMINLSSNSLND-S 236
+P L +L ++ +++ N+ S + E I +I + N+L
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321
Query: 237 LPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLES 296
+ +++Q +K L +L+ NQL G + G+ + L +L+LA NQ G +E+
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381
Query: 297 LDLSGNNLSGKIPKSLE--TLSHLKQFNASHNRLEGKILVKGSFKNFSAESF 346
L + N L IP + ++S + + S+N + + +F F
Sbjct: 382 LSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGS--VDGKNFDPLDPTPF 430
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 2e-47
Identities = 53/325 (16%), Positives = 110/325 (33%), Gaps = 39/325 (12%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
++ + +P L + + + N + L D W L+ ++ + +G
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314
Query: 86 NPL-GGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
N L + + +L+G +P G+ L L+L N + +
Sbjct: 315 NNLKTFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANF 372
Query: 145 MGRLKQLRGLSLKYNNLEG-SIPYDLCHLKLMYGIRLTGNKLSG-------HIPPCLASL 196
G +Q+ LS +N L+ +D + +M I + N++ + P
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND-------SLPSNIQTLKVLRV 249
++ ++L +N+++ + + INL N L + N + +L
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492
Query: 250 LDLSRNQLSGDISTIGA--LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGK 307
+DL N+L+ A L L + L+ N F P + +L+ +
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ----- 546
Query: 308 IPKSLETLSHLKQFNASHNRLEGKI 332
+A NR +
Sbjct: 547 -------------RDAQGNRTLREW 558
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 7e-47
Identities = 51/331 (15%), Positives = 113/331 (34%), Gaps = 43/331 (12%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
SN+ + + L L + + E+ C + +
Sbjct: 189 GQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN-------------ICEAWENENSEY 234
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDL-------- 137
N + +NC +P + L + L+++ N
Sbjct: 235 AQQYKTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293
Query: 138 NGTISPTMGRLKQLRGLSLKYNNL-EGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASL 196
+ ++++ + + YNNL + L +K + + N+L G P S
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSE 352
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSN--IQTLKVLRVLDLSR 254
L L+L N++T + E + ++ + N L +P+ +++ V+ +D S
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411
Query: 255 NQLSGDI--------STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
N++ T +++ +++L++NQ E + L S++L GN L+
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471
Query: 307 -------KIPKSLETLSHLKQFNASHNRLEG 330
++ + L + N+L
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 1e-44
Identities = 56/329 (17%), Positives = 111/329 (33%), Gaps = 40/329 (12%)
Query: 26 DLSSNSF-SGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
+ N+ + + + ++ L L +N L L A + L +L+L
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE---------GKLPAFGSEIKLASLNLA 361
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQ--EIGNLRGLTLLSLFNNDLNG--- 139
N + I P F+ +N + KLK IP + ++ ++ + N++
Sbjct: 362 YNQITEI-PANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419
Query: 140 ----TISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG-------H 188
+ PT + + ++L N + + I L GN L+
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPS-SLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247
+ L + L NKLT +L Y++ I+LS NS + P+ L
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTL 538
Query: 248 RVL------DLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 300
+ D N+ + I L L + SN + + E + ++ LD+
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIK 595
Query: 301 GNNLSGKIPKSLETLSHLKQFNASHNRLE 329
N + + +++ +
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 1e-43
Identities = 50/327 (15%), Positives = 110/327 (33%), Gaps = 44/327 (13%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
++S+ I + + + NN+T A+ L+ +G+
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNIT---------FVSKAVMRLTKLRQFYMGN 215
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
+P S + + NL+ LT + ++N + +
Sbjct: 216 SPFVAENICEAWENENSE------YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
L +++ +++ N K ++ +++G
Sbjct: 270 KALPEMQLINVACNRGIS----------------GEQLKDDWQALADAPVGEKIQIIYIG 313
Query: 206 SNKLTS-SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTI 264
N L + + +SL ++ + M+ N L LP+ + L L+L+ NQ++ +
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANF 372
Query: 265 -GALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSG-------KIPKSLETL 315
G +E LS A N+ + P S+ + ++D S N + + +
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 316 SHLKQFNASHNRLEGKILVKGSFKNFS 342
++ N S+N++ K F S
Sbjct: 433 INVSSINLSNNQISK--FPKELFSTGS 457
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 9e-39
Identities = 44/322 (13%), Positives = 95/322 (29%), Gaps = 47/322 (14%)
Query: 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALS 82
W + + + + + ++ L L + A+ L+ L+
Sbjct: 60 WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP--------DAIGQLTELEVLA 111
Query: 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS 142
LGS+ P+ I T
Sbjct: 112 LGSHGEKVNERL---------------------FGPKGISANMSDEQKQKMRMHYQKTFV 150
Query: 143 PTMGRLK--QLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200
R L + + + SI I N ++ + + LT LR
Sbjct: 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR 209
Query: 201 ELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260
+ ++G++ + W E N + LK L +++
Sbjct: 210 QFYMGNSPFVAENICEAWENE-----NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264
Query: 261 I-STIGALVDLETLSLASNQF--------QGPIPESVGSLISLESLDLSGNNL-SGKIPK 310
+ + + AL +++ +++A N+ ++ + + NNL + +
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324
Query: 311 SLETLSHLKQFNASHNRLEGKI 332
SL+ + L +N+LEGK+
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKL 346
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 8e-33
Identities = 36/244 (14%), Positives = 74/244 (30%), Gaps = 11/244 (4%)
Query: 105 NFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG- 163
NF + + +T LSL +G + +G+L +L L+L + +
Sbjct: 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120
Query: 164 ---SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA--SLTSLRELHLGSNKLTSSIPSSLW 218
P + + + L + + S+ SI S
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180
Query: 219 SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASN 278
I SN++ + + L LR + + + E +
Sbjct: 181 ITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEA----WENENSEYA 235
Query: 279 QFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSF 338
Q +L L +++ K+P L+ L ++ N + NR +K +
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295
Query: 339 KNFS 342
+ +
Sbjct: 296 QALA 299
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 34/231 (14%), Positives = 62/231 (26%), Gaps = 31/231 (13%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
++LS+N S F LSS+ L N LT + + N L ++ L
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK-DENENFKNTYLLTSIDL 495
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N L + P + N L + N
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ-------- 546
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+ N P + + +++ N + + + ++ L
Sbjct: 547 ----------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLD 593
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254
+ N S S + M L + Q ++ LD+ R
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFYD--------KTQDIRGCDALDIKR 636
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG----KIPKSLETLSHL 318
++ + + LSL G +P+++G L LE L L + PK +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 319 KQFNASHNRLEGKI---LVKGSFKNFSAESFFGNYALCGLPK 357
+Q + + F + + + + K
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 7e-44
Identities = 58/329 (17%), Positives = 110/329 (33%), Gaps = 29/329 (8%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFL-SALTNCRHLKALSLG 84
+L + +P+ +L L SL + N + + L W+ L ++ +G
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556
Query: 85 SNPLGGILPPV-IGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N L + + K++ + G LT L L N +
Sbjct: 557 YNNLEEFPASASLQKMV-KLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPED 613
Query: 144 TMGRLKQLRGLSLKYNNLEGSIP--YDLCHLKLMYGIRLTGNKLSGHIPPCLASL----- 196
Q+ GL +N L+ IP ++ + +M + + NK+ S+
Sbjct: 614 FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND-------SLPSNIQTLKVLRV 249
+ + L N++ + I I LS+N + N + +L
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732
Query: 250 LDLSRNQLSG--DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL------SG 301
+DL N+L+ D L L + ++ N F P + L++ + G
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791
Query: 302 NNLSGKIPKSLETLSHLKQFNASHNRLEG 330
N + + P + T L Q N +
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIRK 820
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 3e-43
Identities = 67/342 (19%), Positives = 111/342 (32%), Gaps = 45/342 (13%)
Query: 16 SIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNC 75
+ + + ++ NL+ L+ + L T+ L +
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP--------DFLYDL 514
Query: 76 RHLKALSLGSNPLGGI---------LPPVIGNFSASFQNFYAFNCKLKGNIPQE--IGNL 124
L++L++ N L Q FY L+ P + +
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGP-KIQIFYMGYNNLEE-FPASASLQKM 572
Query: 125 RGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC-HLKLMYGIRLTGN 183
L LL +N + G +L L L YN +E IP D C + G+ + N
Sbjct: 573 VKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629
Query: 184 KLSGHIPPC--LASLTSLRELHLGSNKLTSSIPSSLWSLEYILMIN-----LSSNSLNDS 236
KL IP S+ + + NK+ S + S++ IN LS N +
Sbjct: 630 KLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688
Query: 237 LPSNIQTLKVLRVLDLSRNQLS--------GDISTIGALVDLETLSLASNQFQGPIPES- 287
T + + LS N ++ L T+ L N+ + +
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDF 747
Query: 288 -VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
+L L ++D+S N S P S LK F H R
Sbjct: 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 3e-43
Identities = 52/317 (16%), Positives = 108/317 (34%), Gaps = 24/317 (7%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
L+ G +P+ G L L L ++ T L ++ R + +
Sbjct: 329 SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER-KHRIRMHY 387
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
+ + N S Q+ N ++K +L+ + +L N IS +
Sbjct: 388 KKMFLDYDQRL-NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR--ITFISKAI 444
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
RL +L+ + + K + ++L L ++ L
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDAN-----SDYAKQYENEELSWSNLKDLTDVELY 499
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLND---------SLPSNIQTLKVLRVLDLSRNQ 256
+ + +P L+ L + +N++ N L + T +++ + N
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559
Query: 257 LSG--DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSL-E 313
L +++ +V L L N+ + E+ G+ + L L L N + IP+
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCA 616
Query: 314 TLSHLKQFNASHNRLEG 330
++ SHN+L+
Sbjct: 617 FTDQVEGLGFSHNKLKY 633
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 3e-40
Identities = 50/334 (14%), Positives = 104/334 (31%), Gaps = 46/334 (13%)
Query: 26 DLSSNSFSG---------HIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCR 76
+++ N + + + + +NNL + A L
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS-------LQKMV 573
Query: 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG-NLRGLTLLSLFNN 135
L L N + + G + +++ IP++ + L +N
Sbjct: 574 KLGLLDCVHNKVRHL--EAFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629
Query: 136 DLNG-TISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT-----GNKLSGHI 189
L + + + YN + C + GI + N++
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689
Query: 190 PPCLASLTSLRELHLGSNKLTS-------SIPSSLWSLEYILMINLSSNSLNDSLPSNIQ 242
A+ + + + L +N +TS + + + I+L N L SL + +
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR 748
Query: 243 --TLKVLRVLDLSRNQLSGDISTIGALVDLETLSL------ASNQFQGPIPESVGSLISL 294
TL L +D+S N S + L+ + N+ P + + SL
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808
Query: 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
L + N++ K+ + L L + + N
Sbjct: 809 IQLQIGSNDIR-KVDEKL--TPQLYILDIADNPN 839
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 1e-39
Identities = 46/322 (14%), Positives = 101/322 (31%), Gaps = 31/322 (9%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DL ++ + + ++ S + L + ++ A+ L+ + +
Sbjct: 402 DLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRIT--FISKAIQRLTKLQIIYFAN 457
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
+P V + S K N NL+ LT + L+N + +
Sbjct: 458 SPFTYDNIAVDWEDANSDYA------KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511
Query: 146 GRLKQLRGLSLKYNNLEG---------SIPYDLCHLKLMYGIRLTGNKLSG-HIPPCLAS 195
L +L+ L++ N + D + + N L L
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571
Query: 196 LTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSR 254
+ L L NK+ + + + + L N + +P + + L S
Sbjct: 572 MVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628
Query: 255 NQLSG--DISTIGALVDLETLSLASNQFQGPIPE-----SVGSLISLESLDLSGNNLSGK 307
N+L +I ++ + ++ + N+ I+ ++ LS N +
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688
Query: 308 IPKSLETLSHLKQFNASHNRLE 329
+ T S + S+N +
Sbjct: 689 PTELFATGSPISTIILSNNLMT 710
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 3e-38
Identities = 51/321 (15%), Positives = 99/321 (30%), Gaps = 27/321 (8%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
V+ ++S + + + FL L
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK----MFLDYDQRLNLSDLLQD 406
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N + P + + I + I L L ++ N+
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+ Y + +LK + + L +P L L L+ L+
Sbjct: 467 V-----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521
Query: 204 LGSNKLTS---------SIPSSLWSLEYILMINLSSNSLNDSLPSN--IQTLKVLRVLDL 252
+ N+ S + + I + + N+L P++ +Q + L +LD
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580
Query: 253 SRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGS-LISLESLDLSGNNLSGKIPK- 310
N++ + G V L L L NQ + IPE + +E L S N L IP
Sbjct: 581 VHNKVR-HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNI 637
Query: 311 -SLETLSHLKQFNASHNRLEG 330
+ +++ + + S+N++
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGS 658
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 9e-31
Identities = 37/240 (15%), Positives = 75/240 (31%), Gaps = 11/240 (4%)
Query: 111 CKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC 170
++ N +T LSL G + +G+L +L+ LS ++ S
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 171 HLKLMYGIRLTGNKLSGHIPPC-LASLTSLRELHLGSNKLTS-----SIPSSLWSLEYIL 224
+++ H L L L + + I
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428
Query: 225 MINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPI 284
I +N + + IQ L L+++ + + + D + E + +
Sbjct: 429 QIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVD----WEDANSDYAKQYENE 483
Query: 285 PESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAE 344
S +L L ++L ++P L L L+ N + NR +K + + +
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-23
Identities = 39/251 (15%), Positives = 81/251 (32%), Gaps = 25/251 (9%)
Query: 24 VMDLSSNSFSGHIPNTF--GNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKAL 81
+ S N IPN F ++ + S+ ++N + S S + +
Sbjct: 623 GLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIG---SEGRNISCSMDDYKGINASTV 678
Query: 82 SLGSNPLGGILPPVIGNFSA------SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNN 135
+L N + + S S + N LT + L N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738
Query: 136 DLNGTISPTM--GRLKQLRGLSLKYNNLEGSIPYDLCHLK------LMYGIRLTGNKLSG 187
L ++S L L + + YN S P + + + GN++
Sbjct: 739 KLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796
Query: 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247
P + + SL +L +GSN + + L + +++++ N +++
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEA 853
Query: 248 RVLDLSRNQLS 258
+ L ++
Sbjct: 854 GMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 1e-19
Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 23/220 (10%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
LS N F +S+++L+ N +T+ + + N L + L
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK-PKDGNYKNTYLLTTIDLRF 737
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N L + N P + N L + +
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ---------- 786
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
+ N + P + + +++ N + + L L L +
Sbjct: 787 --------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIA 835
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLK 245
N S +S+ M L + D + ++
Sbjct: 836 DNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 1e-41
Identities = 54/311 (17%), Positives = 106/311 (34%), Gaps = 19/311 (6%)
Query: 27 LSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSN 86
+ + + L +L+ L + ++ + SL S
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD-----DIIDLFNCLTNVSSFSLVSV 292
Query: 87 PLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMG 146
+ + +++ +Q+ NCK ++ +L+ LT G + +
Sbjct: 293 TIERVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEV 344
Query: 147 RLKQLRGLSLKYNNL--EGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
L L L L N L +G + + L+ N + + L L L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403
Query: 205 GSNKLTSSIPSSLW-SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-- 261
+ L S++ SL ++ +++S + L L VL ++ N +
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 262 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQF 321
L +L L L+ Q + P + SL SL+ L++S NN + L+ L+
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523
Query: 322 NASHNRLEGKI 332
+ S N +
Sbjct: 524 DYSLNHIMTSK 534
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-37
Identities = 61/319 (19%), Positives = 106/319 (33%), Gaps = 28/319 (8%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DLS N +F + L L L+ + T A + HL L L
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLSHLSTLILTG 85
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT-ISPT 144
NP+ + S S Q A L IG+L+ L L++ +N + +
Sbjct: 86 NPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLK----LMYGIRLTGNKLSGHIPPCLASLTSLR 200
L L L L N ++ DL L L + L+ N ++ P + L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203
Query: 201 ELHLGSNKLTSSIPSS----LWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQ 256
+L L +N + ++ + L LE ++ + + + L+ L L + +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 257 LS-------GDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 309
L+ I L ++ + SL S + S + L+L
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPT 321
Query: 310 KSLETLSHLKQFNASHNRL 328
L++L L +
Sbjct: 322 LKLKSLKRLTFTSNKGGNA 340
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 3e-37
Identities = 57/329 (17%), Positives = 107/329 (32%), Gaps = 37/329 (11%)
Query: 30 NSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLG 89
+ + I + F L ++SS L + + + + L L + G
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER----------VKDFSYNFGWQHLELVNCKFG 317
Query: 90 GILPPVIGNF------SASFQNFYAF--------------NCKLKGNIPQEIGNLRGLTL 129
+ + S N ++ KG Q L
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377
Query: 130 LSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYGIRLTGNKLSGH 188
L L N + T+S L+QL L +++NL+ + L+ + + ++
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 189 IPPCLASLTSLRELHLGSNKLTSSI-PSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247
L+SL L + N + P L + ++LS L P+ +L L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLI-SLESLDLSGNNLS 305
+VL++S N L L+ L + N + + SL L+L+ N+ +
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Query: 306 GKIPKS--LETLSHLKQFNASHNRLEGKI 332
L+ + +Q R+E
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECAT 585
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 5e-31
Identities = 45/266 (16%), Positives = 88/266 (33%), Gaps = 14/266 (5%)
Query: 72 LTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLS 131
+ ++ + N + N S +N L+ + L +L
Sbjct: 4 VEVVPNITYQCMELN-----FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58
Query: 132 LFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP 191
L ++ L L L L N ++ L + + L+
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 192 CLASLTSLRELHLGSNKLTS-SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRV- 249
+ L +L+EL++ N + S +P +L + ++LSSN + ++++ L + +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 250 ---LDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLS 305
LDLS N ++ + L L+L +N + ++ L LE L
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 306 GKI---PKSLETLSHLKQFNASHNRL 328
+ L L RL
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRL 264
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-30
Identities = 47/221 (21%), Positives = 79/221 (35%), Gaps = 10/221 (4%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
IP + L L N L S + +L+ L L ++ L +
Sbjct: 22 IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND- 235
+ LTGN + + L+SL++L L S + L+ + +N++ N +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 236 SLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLE----TLSLASNQFQGPIPESVGS 290
LP L L LDLS N++ + + L + +L L+ N I
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198
Query: 291 LISLESLDLSGNNLSGKIPK-SLETLSHLKQFNASHNRLEG 330
I L L L N S + K ++ L+ L+
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 5e-28
Identities = 48/283 (16%), Positives = 85/283 (30%), Gaps = 39/283 (13%)
Query: 24 VMDLSSN--SFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKAL 81
+DLS N SF G + L L L++N + T S L+ L
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHL 401
Query: 82 SLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTI 141
+ L + + + + + L L +L + N
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 142 SP-TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200
P L+ L L L LE P L + + ++ N L SL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 201 ELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260
L N + +S L PS+ L L+L++N +
Sbjct: 522 VLDYSLNHIMTSKKQEL-----------------QHFPSS------LAFLNLTQNDFACT 558
Query: 261 IST---IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 300
+ + D L + + + P + + SL+++
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 4e-41
Identities = 76/305 (24%), Positives = 144/305 (47%), Gaps = 31/305 (10%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+L+ N + P NL L++L + N +T +SAL N +L+ L L
Sbjct: 72 NLNGNQITDISP--LSNLVKLTNLYIGTNKITD----------ISALQNLTNLRELYLNE 119
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
+ + I P + N + + ++ + N+ GL L++ + + +
Sbjct: 120 DNISDISP--LANLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--VTPI 173
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
L L LSL YN +E P L L ++ N+++ P +A++T L L +G
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229
Query: 206 SNKLTSSIP-SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTI 264
+NK+T P ++L L ++ + +N ++D + ++ L L++L++ NQ+S DIS +
Sbjct: 230 NNKITDLSPLANLSQLTWL---EIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISVL 283
Query: 265 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324
L L +L L +NQ E +G L +L +L LS N+++ P L +LS + + +
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341
Query: 325 HNRLE 329
+ ++
Sbjct: 342 NQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 62/308 (20%), Positives = 124/308 (40%), Gaps = 31/308 (10%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
L S + + L ++ L++ + + + + +L+ L+L
Sbjct: 28 VLQKASVTDVVT--QEELESITKLVVAGEKVAS----------IQGIEYLTNLEYLNLNG 75
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N + I P + N N Y K+ + NL L L L ++++ +
Sbjct: 76 NQITDISP--LSNLV-KLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPL 128
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
L ++ L+L N+ + L ++ + + +T +K+ + P +A+LT L L L
Sbjct: 129 ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLN 185
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIG 265
N++ P L SL + N + D + + + L L + N+++ D+S +
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKIT-DLSPLA 240
Query: 266 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325
L L L + +NQ +V L L+ L++ N +S L LS L ++
Sbjct: 241 NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296
Query: 326 NRLEGKIL 333
N+L + +
Sbjct: 297 NQLGNEDM 304
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-33
Identities = 59/289 (20%), Positives = 116/289 (40%), Gaps = 29/289 (10%)
Query: 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101
+L +L ++T + + L + + I I +
Sbjct: 20 DLAEGIRAVLQKASVTD----------VVTQEELESITKLVVAGEKVASI--QGIEYLT- 66
Query: 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNL 161
+ + ++ P + NL LT L + N + T + L LR L L +N+
Sbjct: 67 NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNI 122
Query: 162 EGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLE 221
P L +L MY + L N + P L+++T L L + +K+ P + +L
Sbjct: 123 SDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLT 177
Query: 222 YILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQ 281
+ ++L+ N + D S + +L L NQ++ DI+ + + L +L + +N+
Sbjct: 178 DLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQIT-DITPVANMTRLNSLKIGNNKIT 234
Query: 282 GPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330
P + +L L L++ N +S +++ L+ LK N N++
Sbjct: 235 DLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 6e-29
Identities = 63/275 (22%), Positives = 109/275 (39%), Gaps = 19/275 (6%)
Query: 56 LTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKG 115
T ++L + + + L + ++ S K+
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELE-SITKLVVAGEKVAS 58
Query: 116 NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLM 175
Q I L L L+L N + ISP + L +L L + N + + L +L +
Sbjct: 59 --IQGIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKI--TDISALQNLTNL 112
Query: 176 YGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND 235
+ L + +S I P LA+LT + L+LG+N S S L ++ + + ++ + + D
Sbjct: 113 RELYLNEDNIS-DISP-LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD 169
Query: 236 SLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLE 295
+ I L L L L+ NQ+ DIS + +L L + NQ P V ++ L
Sbjct: 170 V--TPIANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITP--VANMTRLN 224
Query: 296 SLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330
SL + N ++ P L LS L N++
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 11/141 (7%)
Query: 193 LASLTSLRELHLGSNKLTSSIP-SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLD 251
A L L +T + L S+ + ++ + I+ L L L+
Sbjct: 18 DADLAEGIRAVLQKASVTDVVTQEELESITK---LVVAGEKVAS--IQGIEYLTNLEYLN 72
Query: 252 LSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS 311
L+ NQ++ DIS + LV L L + +N+ ++ +L +L L L+ +N+S P
Sbjct: 73 LNGNQIT-DISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP-- 127
Query: 312 LETLSHLKQFNASHNRLEGKI 332
L L+ + N N +
Sbjct: 128 LANLTKMYSLNLGANHNLSDL 148
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 2e-39
Identities = 68/358 (18%), Positives = 126/358 (35%), Gaps = 44/358 (12%)
Query: 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTN 74
++P+ ++ S N TF L +L+ L LT + +
Sbjct: 29 GTLPNST-ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE--------DTFQS 79
Query: 75 CRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFN 134
L L L +NPL + + + ++ + + + N + L L L +
Sbjct: 80 QHRLDTLVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138
Query: 135 NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYD---LCHLKLMYGIRLTGNKLSGHIPP 191
N ++ P ++L+ L + N + D L + + L GN ++ I P
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIA-GIEP 196
Query: 192 CLASLTSLRELHLGSNKLTSSIP--------SSLWSLEY--------------------I 223
+ L+ G + I SLW + +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256
Query: 224 LMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGP 283
INL + + + L+ LDL+ LS S + L L+ L L++N+F+
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316
Query: 284 IPESVGSLISLESLDLSGNNLSGKI-PKSLETLSHLKQFNASHNRLEGKILVKGSFKN 340
S + SL L + GN ++ LE L +L++ + SH+ +E +N
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 3e-39
Identities = 73/313 (23%), Positives = 116/313 (37%), Gaps = 19/313 (6%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+L + F NTF L L LT +L+ S L LK L L +
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS---------ELPSGLVGLSTLKKLVLSA 310
Query: 86 NPLGGILPPVIGNFSASFQNFY-AFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN--GTIS 142
N + NF S + N K + NL L L L ++D+ +
Sbjct: 311 NKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
Query: 143 PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTSLRE 201
+ L L+ L+L YN + + L +L +L L+
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Query: 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSL---NDSLPSNIQTLKVLRVLDLSRNQLS 258
L+L + L S L + +NL N N +++QTL L +L LS LS
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Query: 259 G-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSH 317
D +L + + L+ N+ E++ L + L+L+ N++S +P L LS
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQ 548
Query: 318 LKQFNASHNRLEG 330
+ N N L+
Sbjct: 549 QRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 8e-39
Identities = 67/347 (19%), Positives = 119/347 (34%), Gaps = 31/347 (8%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLS--SLLLTWNNLTTESSLADQWSFLSAL--------- 72
V+D +N+ +L+ + SL L N++ A + +L
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216
Query: 73 --------TNCRHLKALSLGSNPLGGILPPVIGNFSA-SFQNFYAFNCKLKGNIPQEIGN 123
+ + L + I P V S ++
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276
Query: 124 LRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGN 183
GL L L L+ + + L L+ L L N E + + + + GN
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 184 KLSGHIPP-CLASLTSLRELHLGSNKLTSS--IPSSLWSLEYILMINLSSNSLNDSLPSN 240
+ CL +L +LREL L + + +S L +L ++ +NLS N
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395
Query: 241 IQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 298
+ L +LDL+ +L S L L+ L+L+ + + L +L+ L+
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455
Query: 299 LSGNNLSGKI---PKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
L GN+ SL+TL L+ S L + + +F +
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS--IDQHAFTSLK 500
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-31
Identities = 50/328 (15%), Positives = 95/328 (28%), Gaps = 44/328 (13%)
Query: 9 SPHGDSPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSF 68
+ D I ++ + + + IP T L ++N L T +
Sbjct: 1 TTSSDQKCIEKEVNKTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQN------- 50
Query: 69 LSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLT 128
+ + +L L L + I + L
Sbjct: 51 -TTFSRLINLTFLDLTRCQIYWI-------------------------HEDTFQSQHRLD 84
Query: 129 LLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGH 188
L L N L + K L+ L + L + K + + L N +S
Sbjct: 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLE--YILMINLSSNSLNDSLPSNIQTLKV 246
P L+ L +N + + SL+ L +NL+ N + + V
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAV 203
Query: 247 LRVLDLSRNQLSGDI---STIGALVDLETLSLASNQFQGPIPESVGSL--ISLESLDLSG 301
+ L+ Q I + L + + P L +S+ES++L
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263
Query: 302 NNLSGKIPKSLETLSHLKQFNASHNRLE 329
+ + S L++ + + L
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS 291
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 64/285 (22%), Positives = 109/285 (38%), Gaps = 16/285 (5%)
Query: 26 DLSSNSFSGHI-PNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
+ N+ + NL +L L L+ +++ T L N HL++L+L
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL------QLRNLSHLQSLNLS 384
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISP 143
N + + +LK Q NL L +L+L ++ L+ +
Sbjct: 385 YNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443
Query: 144 TMGRLKQLRGLSLKYNNLEGSI---PYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200
L L+ L+L+ N+ L L + + L+ LS SL +
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503
Query: 201 ELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260
+ L N+LTSS +L L+ + +NL+SN ++ LPS + L R ++L +N L
Sbjct: 504 HVDLSHNRLTSSSIEALSHLK-GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562
Query: 261 ISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
S I LE + + + L + LS LS
Sbjct: 563 CSNIYF---LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 3e-36
Identities = 59/312 (18%), Positives = 101/312 (32%), Gaps = 30/312 (9%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
L+ + F L ++S++ L ++ L + ++LS+
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY----------LEDVPKHFKWQSLSIIR 316
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNC----KLKGNIPQEIGNLRGLTLLSLFNNDLN--G 139
L + KG+I + L L+ L L N L+ G
Sbjct: 317 CQLKQF----------PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 366
Query: 140 TISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTS 198
S + LR L L +N + + L+ + + + L SL
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425
Query: 199 LRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQL 257
L L + L + + ++ NS D+ SN+ L LDLS+ QL
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485
Query: 258 SG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 316
L L+ L+++ N L SL +LD S N +
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
Query: 317 HLKQFNASHNRL 328
L FN ++N +
Sbjct: 546 SLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 4e-34
Identities = 59/322 (18%), Positives = 99/322 (30%), Gaps = 16/322 (4%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
L F + L + + D + ++ A+SL
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
+ + +Q+ C+LK ++ L+ LTL G+IS
Sbjct: 295 VSIKYLED---VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL-----TMNKGSISFKK 346
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY--GIRLTGNKLSGHIPPCLASLTSLRELH 203
L L L L N L S L + L+ N + L L+ L
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLD 405
Query: 204 LGSNKLTSSIPSSLW-SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI- 261
+ L S + SLE +L +++S + L L L ++ N +
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
Query: 262 -STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQ 320
+ +L L L+ Q + +L L+ L++S NNL L L
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525
Query: 321 FNASHNRLEGKILVKGSFKNFS 342
+ S NR+E
Sbjct: 526 LDCSFNRIET--SKGILQHFPK 545
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 8e-32
Identities = 69/319 (21%), Positives = 107/319 (33%), Gaps = 30/319 (9%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DLS N +F N L L L+ + T A HL L L
Sbjct: 38 DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED--------KAWHGLHHLSNLILTG 89
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG-TISPT 144
NP+ P + S +N A KL IG L L L++ +N ++ +
Sbjct: 90 NPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLK----LMYGIRLTGNKLSGHIPPCLASLTSLR 200
L L + L YN ++ DL L+ + + ++ N + I L
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLH 207
Query: 201 ELHLGSNKLTSSIP-------SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRV--LD 251
EL L N +S+I + L IL +L PS ++ L + +
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267
Query: 252 LSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPK 310
L+ DI L ++ +SLA + E V +SL + L
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTL 325
Query: 311 SLETLSHLKQFNASHNRLE 329
L L L + N+
Sbjct: 326 DLPFLKSL---TLTMNKGS 341
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 5e-28
Identities = 51/221 (23%), Positives = 83/221 (37%), Gaps = 10/221 (4%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
+P +I + + L N L S + +L+ L L +E L +
Sbjct: 26 VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND- 235
+ LTGN + P + LTSL L KL S + L + +N++ N ++
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143
Query: 236 SLPSNIQTLKVLRVLDLSRNQLSG-DISTIGAL----VDLETLSLASNQFQGPIPESVGS 290
LP+ L L +DLS N + ++ + L +L ++ N I +
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQ 202
Query: 291 LISLESLDLSGNNLSGKIPK-SLETLSHLKQFNASHNRLEG 330
I L L L GN S I K L+ L+ L +
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 8e-24
Identities = 44/245 (17%), Positives = 80/245 (32%), Gaps = 12/245 (4%)
Query: 110 NCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDL 169
LK N L L L ++ L L L L N ++ P
Sbjct: 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100
Query: 170 CHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTS-SIPSSLWSLEYILMINL 228
L + + KL+ + L +L++L++ N + S +P+ +L ++ ++L
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160
Query: 229 SSNSLNDSLPSNIQTLK----VLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPI 284
S N + +++Q L+ V LD+S N + + L L+L N I
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220
Query: 285 PESVGS-LISLESLDLSGNNLSGKI------PKSLETLSHLKQFNASHNRLEGKILVKGS 337
++ L L L + P +E L +
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 338 FKNFS 342
F +
Sbjct: 281 FHCLA 285
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 7e-22
Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 12/237 (5%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+ L+ N S I L LS L L+ N L+ + L+ L L
Sbjct: 332 SLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDL------GTNSLRHLDL 383
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQE-IGNLRGLTLLSLFNNDLNGTIS 142
N I+ Q+ + LK +L L L + +
Sbjct: 384 SFNGAI-IMSANFMGLE-ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 143 PTMGRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201
L L L + N+ + + + + + + L+ +L +L L+
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501
Query: 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258
L++ N L S L + ++ S N + S K L +L+ N ++
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 7e-18
Identities = 39/229 (17%), Positives = 68/229 (29%), Gaps = 11/229 (4%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DLS N + F L L L + L + SA + L L +
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF-------SAFLSLEKLLYLDISY 433
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISPT 144
+ + S K N + N LT L L L
Sbjct: 434 TNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
L +L+ L++ +NNL L + + + N++ SL +L
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253
+N + I L+++ ++ + + VLD +
Sbjct: 553 TNNSVA-CICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFN 600
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 56/296 (18%), Positives = 99/296 (33%), Gaps = 28/296 (9%)
Query: 36 IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPV 95
++ + ++ + + AD + AL L S PL P
Sbjct: 45 RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQP----GRVALELRSVPLP-QFPDQ 99
Query: 96 IGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLS 155
S Q+ L +P + GL L+L N L + ++ L +LR LS
Sbjct: 100 AFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156
Query: 156 LKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPS 215
++ +P L L +L+ L L + S +P+
Sbjct: 157 IRACPELTELPEPLASTDA---------------SGEHQGLVNLQSLRLEWTGIRS-LPA 200
Query: 216 SLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLS 274
S+ +L+ + + + ++ L+ +L I L L LDL + G L+ L
Sbjct: 201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 275 LAS-NQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L + +P + L LE LDL G ++P + L +
Sbjct: 260 LKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 42/261 (16%), Positives = 81/261 (31%), Gaps = 35/261 (13%)
Query: 100 SASFQNFYAFNCKLKGNIPQEIGNLR-----------------GLTLLSLFNNDLNG--T 140
S+ +N Y + + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70
Query: 141 ISPTMGRLKQ--LRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTS 198
+ + Q L L+ L P L + + + L +P +
Sbjct: 71 TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG 128
Query: 199 LRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI---------QTLKVLRV 249
L L L N L ++P+S+ SL + +++ + LP + Q L L+
Sbjct: 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 250 LDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 309
L L + ++I L +L++L + ++ + ++ L LE LDL G P
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP 246
Query: 310 KSLETLSHLKQFNASH-NRLE 329
+ LK+ + L
Sbjct: 247 PIFGGRAPLKRLILKDCSNLL 267
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 44/245 (17%), Positives = 88/245 (35%), Gaps = 25/245 (10%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
++L S P+ L HL + + L + L+ L+L
Sbjct: 85 ALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM---------ELPDTMQQFAGLETLTL 134
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGN---------LRGLTLLSLFN 134
NPL LP I + + + C +P+ + + L L L L
Sbjct: 135 ARNPLR-ALPASIASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
Query: 135 NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA 194
+ ++ ++ L+ L+ L ++ + L ++ + HL + + L G + PP
Sbjct: 193 TGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 195 SLTSLRELHL-GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253
L+ L L + L ++P + L + ++L LPS I L ++ +
Sbjct: 251 GRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309
Query: 254 RNQLS 258
+ +
Sbjct: 310 PHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 6e-19
Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 7/199 (3%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTE--SSLADQWSFLSALTNCRHLKAL 81
+ L+ N +P + +L L L + TE LA +L++L
Sbjct: 131 TLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA-STDASGEHQGLVNLQSL 188
Query: 82 SLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTI 141
L + LP I N + ++ N L + I +L L L L
Sbjct: 189 RLEWTGIRS-LPASIANLQ-NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY 245
Query: 142 SPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201
P G L+ L LK + ++P D+ L + + L G +P +A L +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
Query: 202 LHLGSNKLTSSIPSSLWSL 220
+ + + +
Sbjct: 306 ILVPPHLQAQLDQHRPVAR 324
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-33
Identities = 78/308 (25%), Positives = 132/308 (42%), Gaps = 31/308 (10%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLAD-----------QWSFLSALTN 74
L +N + P NL +L+ L L+ N ++ S+L+ Q + L L N
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 175
Query: 75 CRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFN 134
L+ L + SN + I V+ + + ++ A N ++ P +G L L LSL
Sbjct: 176 LTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNG 230
Query: 135 NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA 194
N L T+ L L L L N + P L L + ++L N++S I P LA
Sbjct: 231 NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LA 284
Query: 195 SLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254
LT+L L L N+L P + +L+ + + L N+++D S + +L L+ L
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYN 340
Query: 255 NQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLET 314
N++S D+S++ L ++ LS NQ P + +L + L L+ +
Sbjct: 341 NKVS-DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397
Query: 315 LSHLKQFN 322
+S
Sbjct: 398 VSIPNTVK 405
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 7e-32
Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 33/305 (10%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+ L +L+ + + N LT ++ L N L + + +
Sbjct: 52 QADRLGIK--SIDGVEYLNNLTQINFSNNQLTD----------ITPLKNLTKLVDILMNN 99
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N + I P + N + + FN ++ P + NL L L L +N ++ +
Sbjct: 100 NQIADITP--LANLT-NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SAL 152
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
L L+ LS N + P L +L + + ++ NK+S LA LT+L L
Sbjct: 153 SGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 207
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIG 265
+N+++ P L L + ++L+ N L D + +L L LDL+ NQ+S +++ +
Sbjct: 208 NNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLS 262
Query: 266 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325
L L L L +NQ P + L +L +L+L+ N L P + L +L
Sbjct: 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318
Query: 326 NRLEG 330
N +
Sbjct: 319 NNISD 323
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 6e-30
Identities = 79/301 (26%), Positives = 125/301 (41%), Gaps = 33/301 (10%)
Query: 42 NLRHLSSLLLTWNNLTTESSLAD------------QWSFLSALTNCRHLKALSLGSNPLG 89
L +L N+T S D + + +L ++ +N L
Sbjct: 22 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 81
Query: 90 GILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLK 149
I P + N + + N ++ P + NL LT L+LFNN + T + L
Sbjct: 82 DITP--LKNLT-KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI--TDIDPLKNLT 134
Query: 150 QLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKL 209
L L L N + L L + + GN+++ P LA+LT+L L + SNK+
Sbjct: 135 NLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKV 189
Query: 210 TSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVD 269
+ S L L + + ++N ++D + + L L L L+ NQL DI T+ +L +
Sbjct: 190 SD--ISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLK-DIGTLASLTN 244
Query: 270 LETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L L LA+NQ P + L L L L N +S P L L+ L + N+LE
Sbjct: 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300
Query: 330 G 330
Sbjct: 301 D 301
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-27
Identities = 61/304 (20%), Positives = 117/304 (38%), Gaps = 32/304 (10%)
Query: 29 SNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPL 88
N + P NL L L ++ N ++ +S L +L++L +N +
Sbjct: 164 GNQVTDLKP--LANLTTLERLDISSNKVSD----------ISVLAKLTNLESLIATNNQI 211
Query: 89 GGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRL 148
I P +G + + +LK + +L LT L L NN ++ + L
Sbjct: 212 SDITP--LGILT-NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGL 264
Query: 149 KQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNK 208
+L L L N + P L L + + L N+L +++L +L L L N
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNN 320
Query: 209 LTSSIP-SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGAL 267
++ P SSL L+ + +N ++D S++ L + L NQ+S D++ + L
Sbjct: 321 ISDISPVSSLTKLQRL---FFYNNKVSD--VSSLANLTNINWLSAGHNQIS-DLTPLANL 374
Query: 268 VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNR 327
+ L L + P + + +S+ + + P ++ + + + N
Sbjct: 375 TRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNL 432
Query: 328 LEGK 331
Sbjct: 433 PSYT 436
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 43/262 (16%)
Query: 69 LSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLT 128
+ T LG + + +L +T
Sbjct: 17 IFTDTALAEKMKTVLGKTNVTDTVS---------------------------QTDLDQVT 49
Query: 129 LLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGH 188
L + +I + L L ++ N L P L +L + I + N+++
Sbjct: 50 TLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 105
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLR 248
P LA+LT+L L L +N++T P L +L + + LSSN+++D S + L L+
Sbjct: 106 TP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQ 159
Query: 249 VLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308
L D+ + L LE L ++SN+ + L +LESL + N +S
Sbjct: 160 QLSFGNQVT--DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT 215
Query: 309 PKSLETLSHLKQFNASHNRLEG 330
P L L++L + + + N+L+
Sbjct: 216 P--LGILTNLDELSLNGNQLKD 235
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 67/311 (21%), Positives = 116/311 (37%), Gaps = 51/311 (16%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
D+SSN S + L +L SL+ T N ++ ++ L +L LSL
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISD----------ITPLGILTNLDELSLNG 230
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N L I + + + + + N ++ P + L LT L L N ++ +
Sbjct: 231 NQLKDI--GTLASLT-NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 283
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
L L L L N LE P + +LK + + L N +S P ++SLT L+ L
Sbjct: 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIG 265
+NK++ SSL +L I ++ N ++D + + L + L L+ +
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYK 395
Query: 266 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNL--------------------- 304
A V + P ++ S D++ N
Sbjct: 396 ANVSIPNTVKNVTGALIA-PATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454
Query: 305 --SGKIPKSLE 313
SG + + L+
Sbjct: 455 TFSGTVTQPLK 465
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 228 LSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPES 287
+N L L + ++ D + L + TL + +
Sbjct: 9 TQDTPINQI--FTDTALAEKMKTVLGKTNVT-DTVSQTDLDQVTTLQADRLGIK--SIDG 63
Query: 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330
V L +L ++ S N L+ P L+ L+ L ++N++
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 4e-31
Identities = 57/315 (18%), Positives = 105/315 (33%), Gaps = 47/315 (14%)
Query: 36 IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPV 95
I N +T ++L + S + ++K L L NPL I
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALA--------SLRQSAWNVKELDLSGNPLSQI---- 49
Query: 96 IGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLS 155
++ L LL+L +N L + + L LR L
Sbjct: 50 ---------------------SAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLD 86
Query: 156 LKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPS 215
L N ++ +L + + N +S + + + ++L +NK+T
Sbjct: 87 LNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDL 138
Query: 216 SLWSLEYILMINLSSNSLND-SLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLS 274
+ ++L N ++ + + L L+L N + D+ L+TL
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLD 197
Query: 275 LASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV 334
L+SN+ + S + + L N L I K+L +L+ F+ N L
Sbjct: 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255
Query: 335 KGSFKNFSAESFFGN 349
KN ++
Sbjct: 256 DFFSKNQRVQTVAKQ 270
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 9e-27
Identities = 53/302 (17%), Positives = 96/302 (31%), Gaps = 26/302 (8%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DLS N S L L L+ N L L + L+ L L +
Sbjct: 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYE----------TLDLESLSTLRTLDLNN 89
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N + +L S + +A N + + +G + L NN +
Sbjct: 90 NYVQELLVG------PSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDE 140
Query: 146 GRLKQLRGLSLKYNNLEG-SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
G +++ L LK N ++ + + + L N + + L+ L L
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDL 198
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTI 264
SNKL + S + I+L +N L + ++ + L DL N
Sbjct: 199 SSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256
Query: 265 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPK-SLETLSHLKQFNA 323
+ ++A + + ++ +L G +P + L L +
Sbjct: 257 FFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315
Query: 324 SH 325
H
Sbjct: 316 HH 317
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Query: 164 SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYI 223
+I + ++T + L + S +++EL L N L+ + L +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 224 LMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGP 283
++NLSSN L + ++++L LR LDL+ N + + +ETL A+N
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISR- 113
Query: 284 IPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
+ S G +++ L+ N ++ S ++ + N ++
Sbjct: 114 VSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 4e-29
Identities = 54/295 (18%), Positives = 100/295 (33%), Gaps = 47/295 (15%)
Query: 36 IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPV 95
I N +T ++L + S + ++K L L NPL I
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALA--------SLRQSAWNVKELDLSGNPLSQI---- 49
Query: 96 IGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLS 155
++ L LL+L +N L + + L LR L
Sbjct: 50 ---------------------SAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLD 86
Query: 156 LKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPS 215
L N ++ +L + + N +S + + + ++L +NK+T
Sbjct: 87 LNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDL 138
Query: 216 SLWSLEYILMINLSSNSLND-SLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLS 274
+ ++L N ++ + + L L+L N + D+ L+TL
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLD 197
Query: 275 LASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L+SN+ + S + + L N L I K+L +L+ F+ N
Sbjct: 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-27
Identities = 51/306 (16%), Positives = 93/306 (30%), Gaps = 24/306 (7%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DLS N S L L L+ N L L + L+ L L +
Sbjct: 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYE----------TLDLESLSTLRTLDLNN 89
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N + +L S + +A N + + +G + L NN +
Sbjct: 90 NYVQELLVG------PSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDE 140
Query: 146 GRLKQLRGLSLKYNNLEG-SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
G +++ L LK N ++ + + + L N + + L+ L L
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDL 198
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTI 264
SNKL + S + I+L +N L + ++ + L DL N
Sbjct: 199 SSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256
Query: 265 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324
+ ++A + ++ + L LK+ +
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316
Query: 325 HNRLEG 330
+G
Sbjct: 317 LLSGQG 322
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 11/148 (7%)
Query: 195 SLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254
+ + + + L ++ S S + ++LS N L+ +++ L +L+LS
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 255 NQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLET 314
N L + + +L L TL L +N Q + S+E+L + NN+S ++
Sbjct: 68 NVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS--CSR 118
Query: 315 LSHLKQFNASHNRLEGKILVKGSFKNFS 342
K ++N++ L S
Sbjct: 119 GQGKKNIYLANNKITM--LRDLDEGCRS 144
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 4e-15
Identities = 38/360 (10%), Positives = 90/360 (25%), Gaps = 55/360 (15%)
Query: 24 VMDLSSNSFSG-HIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALS 82
+DL N + + L L L +N + + LK L
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD----------VKGQVVFAKLKTLD 197
Query: 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS 142
L SN L + P + + N KL I + + + L L N + +
Sbjct: 198 LSSNKLAFM-GPEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGT 253
Query: 143 PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLS---------------- 186
K R ++ ++ + +
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313
Query: 187 ------------GHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234
+ + RE+ + + I + + + +L+
Sbjct: 314 EHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
Query: 235 DSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQF-QGPIPESVGSLIS 293
+ + + + L L+ L ++ + + + +
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNA 433
Query: 294 LESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALC 353
+ D+ + + L + NA +L G+ + + N + +
Sbjct: 434 IRDWDMYQHK-----------ETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 212 SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG-DISTIGALVDL 270
+I + + ++ +SL +L S Q+ ++ LDLS N LS + + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 271 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
E L+L+SN + + SL +L +LDL+ N + L ++ +A++N +
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 1e-28
Identities = 69/306 (22%), Positives = 123/306 (40%), Gaps = 52/306 (16%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
V+++ + + +P+ H+++L++ NNLT S + L+ L +
Sbjct: 44 VLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT---------SLPALPPE---LRTLEV 88
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N L LP + F+ L ++P L L + F N L ++
Sbjct: 89 SGNQLT-SLPVLPPGL----LELSIFSNPLT-HLPALPSGLCKLWI---FGNQLT-SLPV 138
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
L++L S+ N L S+P L ++ N+L+ +P + L+EL
Sbjct: 139 LPPGLQEL---SVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPM---LPSGLQELS 187
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIST 263
+ N+L S +P+ L + +N L SLP+ L + L +S N+L+
Sbjct: 188 VSDNQLAS-LPTLPSELYKL---WAYNNRLT-SLPALPSGL---KELIVSGNRLTSLPVL 239
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
L + L ++ N+ +P L SL + N L+ ++P+SL LS N
Sbjct: 240 PSEL---KELMVSGNRLTS-LPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNL 291
Query: 324 SHNRLE 329
N L
Sbjct: 292 EGNPLS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-26
Identities = 65/302 (21%), Positives = 118/302 (39%), Gaps = 49/302 (16%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+ N+ + +P LR L ++ N LT S L S
Sbjct: 67 VIPDNNLT-SLPALPPELRTLE---VSGNQLT---------SLPVLPPGLLELSIFSNPL 113
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
L + + F +L ++P L+ L++ +N L ++
Sbjct: 114 THLPALPS--------GLCKLWIFGNQLT-SLPVLPPGLQELSVS---DNQLA-SLPALP 160
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
L +L N L S+P L+ + ++ N+L+ +P + L +L
Sbjct: 161 SELCKLW---AYNNQLT-SLPMLPSGLQELS---VSDNQLA-SLPT---LPSELYKLWAY 209
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIG 265
+N+LTS +P+ L+ + +S N L SLP L + L +S N+L+
Sbjct: 210 NNRLTS-LPALPSGLKEL---IVSGNRLT-SLPVLPSEL---KELMVSGNRLTSLPMLPS 261
Query: 266 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325
L +LS+ NQ +PES+ L S +++L GN LS + ++L ++ ++
Sbjct: 262 ---GLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317
Query: 326 NR 327
R
Sbjct: 318 IR 319
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 5e-25
Identities = 65/321 (20%), Positives = 109/321 (33%), Gaps = 47/321 (14%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
++S N + +P L LS +L + L L +
Sbjct: 87 EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL------------PSG---LCKLWIFG 130
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N L LP + Q + +L ++P L L NN L ++
Sbjct: 131 NQLTS-LPVLPPGL----QELSVSDNQLA-SLPALPSELCKLWAY---NNQLT-SLPMLP 180
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
L++L S+ N L S+P L ++ N+L+ +P A + L+EL +
Sbjct: 181 SGLQEL---SVSDNQLA-SLPTLPSELYKLW---AYNNRLT-SLP---ALPSGLKELIVS 229
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIG 265
N+LTS +P L+ + +S N L SLP L L + RNQL+ ++
Sbjct: 230 GNRLTS-LPVLPSELKEL---MVSGNRL-TSLPMLPSGL---LSLSVYRNQLTRLPESLI 281
Query: 266 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPK--SLETLSHLKQFNA 323
L T++L N +++ + S HL +
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341
Query: 324 SHNRLEGKILVKGSFKNFSAE 344
EG+ + F E
Sbjct: 342 LVPAREGEPAPADRWHMFGQE 362
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 2e-18
Identities = 51/271 (18%), Positives = 94/271 (34%), Gaps = 38/271 (14%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTN--------CRH 77
+ N + +P L+ LS ++ N L + +L + L A N
Sbjct: 127 WIFGNQLT-SLPVLPPGLQELS---VSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSG 182
Query: 78 LKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDL 137
L+ LS+ N L LP + +A+N +L ++P L+ L + N L
Sbjct: 183 LQELSVSDNQLA-SLPTLPSEL----YKLWAYNNRLT-SLPALPSGLKELIVS---GNRL 233
Query: 138 NGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLT 197
++ LK+L + N L S+P L + + N+L+ +P L L+
Sbjct: 234 T-SLPVLPSELKEL---MVSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RLPESLIHLS 284
Query: 198 SLRELHLGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254
S ++L N L+ + S + + S P + L + L
Sbjct: 285 SETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344
Query: 255 NQLS-----GDISTIGALVDLETLSLASNQF 280
+ G + + SL ++
Sbjct: 345 AREGEPAPADRWHMFGQEDNADAFSLFLDRL 375
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 3e-13
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 34/158 (21%)
Query: 189 IPPCLASLTSLRELHLGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLK 245
+ CL L++G + LT+ +P+ + +L + N+L SLP+
Sbjct: 34 MRACL--NNGNAVLNVGESGLTTLPDCLPAHITTL------VIPDNNLT-SLPALPPE-- 82
Query: 246 VLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLI------------- 292
LR L++S NQL+ L++L S +P + L
Sbjct: 83 -LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLP 140
Query: 293 -SLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L+ L +S N L+ +P L L A +N+L
Sbjct: 141 PGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT 174
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 6e-28
Identities = 70/343 (20%), Positives = 116/343 (33%), Gaps = 36/343 (10%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
LS N ++F L L L L A N +L+ L LGS
Sbjct: 30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-------KEAFRNLPNLRILDLGS 82
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQE--IGNLRGLTLLSLFNNDLNG-TIS 142
+ + + P + C L + ++ NL+ LT L L N + +
Sbjct: 83 SKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141
Query: 143 PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY--GIRLTGNKLSGHIPPCLASL---- 196
P+ G+L L+ + N + ++L L+ L N L +
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 197 --TSLRELHLGSNKLTSSIPS------------SLWSLEYILMINLSSNSLNDSLPSNIQ 242
L L + N T I SL +I+ +++ D +
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261
Query: 243 TLKV--LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 299
L +R LDLS + + L DL+ L+LA N+ E+ L +L+ L+L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 300 SGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
S N L + L + + N + I+ +FK
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIA--IIQDQTFKFLE 362
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 23/312 (7%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DL S+ P+ F L HL L L + L+ N + L L L
Sbjct: 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG------YFRNLKALTRLDLSK 132
Query: 86 NPLGGI-LPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTL--LSLFNNDLNGTIS 142
N + + L P G + S ++ + ++ E+ L+G TL SL N L +S
Sbjct: 133 NQIRSLYLHPSFGKLN-SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 143 PTMGR-LKQLRGLSLKYNNLEGS-IPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200
G+ + R + L+ ++ G+ D+ N +S L +
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS--------NAISKSQAFSLILAHHIM 243
Query: 201 ELHLGSNKLTSSIPSSLWSLE--YILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258
G + + ++ L + ++LS + +TLK L+VL+L+ N+++
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303
Query: 259 G-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSH 317
L +L+ L+L+ N + L + +DL N+++ ++ + L
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363
Query: 318 LKQFNASHNRLE 329
L+ + N L
Sbjct: 364 LQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 70/340 (20%), Positives = 118/340 (34%), Gaps = 40/340 (11%)
Query: 26 DLSSNSFSGHIPNTFGNL------RHLSSLLLTWNNLTTE----SSLADQWSFLSALTNC 75
L++NS + +G L L ++ N T + S A S +L
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239
Query: 76 RHLKALSLGSNPLGGILPPVIGN-FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFN 134
H+ G + + +S ++ + + + L+ L +L+L
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 135 NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA 194
N +N L L+ L+L YN L + L + I L N ++
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 195 SLTSLRELHLGSNKLT------------------SSIPSSLWSLEYILMINLSSNSL-ND 235
L L+ L L N LT ++P + I +LS N L N
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI---HLSENRLENL 416
Query: 236 SLPSNIQTLKVLRVLDLSRNQLSG--DISTIGALVDLETLSLASNQFQGPIPESV----- 288
+ + + L++L L++N+ S T LE L L N Q +
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476
Query: 289 GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
L L+ L L+ N L+ P L+ L+ + + NRL
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 62/325 (19%), Positives = 113/325 (34%), Gaps = 35/325 (10%)
Query: 26 DLSSNSFSG-HIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
DLS N ++ +FG L L S+ + N + L L + L SL
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-----LEPLQG-KTLSFFSLA 182
Query: 85 SNPLGGILPPVIGNFSASFQNFY-----------------AFNCKLKGNIPQEIGNLRGL 127
+N L + G F+N F+ + + + +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 128 TLLSLFNNDLNGTISPTMGRLKQ--LRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKL 185
+++ T L + +R L L + + LK + + L NK+
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 186 SGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLK 245
+ L +L+ L+L N L S+ + L + I+L N + + L+
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362
Query: 246 VLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L+ LDL N ++TI + + + L+ N+ + ++ + LS N L
Sbjct: 363 KLQTLDLRDNA----LTTIHFIPSIPDIFLSGNKLVTLPKIN----LTANLIHLSENRLE 414
Query: 306 G-KIPKSLETLSHLKQFNASHNRLE 329
I L + HL+ + NR
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFS 439
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 6e-19
Identities = 50/248 (20%), Positives = 88/248 (35%), Gaps = 32/248 (12%)
Query: 110 NCKLKG--NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPY 167
+ +PQ L L L N + + + L+QL+ L L +I
Sbjct: 10 FYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66
Query: 168 DLCH-LKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSI--PSSLWSLEYIL 224
+ L + + L +K+ P L L EL L L+ ++ +L+ +
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 225 MINLSSNSLND-SLPSNIQTLKVLRVLDLSRNQLS----GDISTIGALVDLETLSLASNQ 279
++LS N + L + L L+ +D S NQ+ ++ + L SLA+N
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANS 185
Query: 280 FQGPIPESVGSL------ISLESLDLSGNNLSGKIPK------------SLETLSHLKQF 321
+ G + LE LD+SGN + I SL H+
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 322 NASHNRLE 329
+ ++
Sbjct: 246 GFGFHNIK 253
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 1e-17
Identities = 67/387 (17%), Positives = 116/387 (29%), Gaps = 72/387 (18%)
Query: 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALS 82
V++LS N + F L ++ + L N++ L+ L
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD--------QTFKFLEKLQTLD 368
Query: 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG-TI 141
L N L I +F S + + KL +P+ L+ L N L I
Sbjct: 369 LRDNALTTI------HFIPSIPDIFLSGNKLV-TLPK---INLTANLIHLSENRLENLDI 418
Query: 142 SPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201
+ R+ L+ L L N SL +
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSE-----------------------NPSLEQ 455
Query: 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG-D 260
L LG N L + + L + L L+VL L+ N L+
Sbjct: 456 LFLGENMLQLAWETEL-------------------CWDVFEGLSHLQVLYLNHNYLNSLP 496
Query: 261 ISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQ 320
L L LSL SN+ + + +LE LD+S N L P + L
Sbjct: 497 PGVFSHLTALRGLSLNSNRLTV-LSHND-LPANLEILDISRNQLLAPNP---DVFVSLSV 551
Query: 321 FNASHNRLEGKILVKG-----SFKNFSAESFFGNYALCGLPKFRVPPCKQGDSKSTKNVA 375
+ +HN+ + + + N + + F ++
Sbjct: 552 LDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEE 611
Query: 376 LIVLKYILPPIVSSVLIVIIIIMYIRC 402
++ IV +V + + ++ +
Sbjct: 612 VLKSLKFSLFIVCTVTLTLFLMTILTV 638
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 227 NLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIP 285
+L +P + T + L LS N + S+ L L+ L L S I
Sbjct: 10 FYRFCNL-TQVPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 286 ESV-GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKN 340
+ +L +L LDL + + P + + L HL + L +L G F+N
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 9e-28
Identities = 64/338 (18%), Positives = 119/338 (35%), Gaps = 58/338 (17%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTT---ESSLADQWSFLSALTNC--RHLKA 80
S++ + +P N++ + W+ + + +S L +C R
Sbjct: 17 LRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75
Query: 81 LSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT 140
L L + L LP + + ++ A L +P+ +L+ L + + L+
Sbjct: 76 LELNNLGL-SSLPELPPH----LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129
Query: 141 IS---------------PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKL 185
P + L+ + + N+L+ +P L+ + N+L
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIA---AGNNQL 185
Query: 186 SGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLK 245
P L +L L ++ +N L +P SLE I +N L +Q L
Sbjct: 186 E--ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNNIL--EELPELQNLP 237
Query: 246 VLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L + N L LE L++ N +PE SL L+ + + LS
Sbjct: 238 FLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLS 293
Query: 306 GKIPKSLETL--------------SHLKQFNASHNRLE 329
++P +L L L++ N S+N+L
Sbjct: 294 -ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 53/314 (16%), Positives = 106/314 (33%), Gaps = 49/314 (15%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLAD----------QWSFLSALTN 74
+ +N +P NL L+++ N+L L L L N
Sbjct: 178 IAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN 235
Query: 75 CRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFN 134
L + +N L LP + + + + L ++P+ +L L +
Sbjct: 236 LPFLTTIYADNNLLK-TLPDLPPSL----EALNVRDNYLT-DLPELPQSLTFLDVSENIF 289
Query: 135 NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA 194
+ L+ L L+ N + S+ L+ + ++ NKL +P
Sbjct: 290 SGLSELP-------PNLYYLNASSNEIR-SLCDLPPSLEELN---VSNNKLI-ELPA--- 334
Query: 195 SLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254
L L N L +P +L+ + ++ N L P ++++ LR+
Sbjct: 335 LPPRLERLIASFNHLAE-VPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRMN---- 385
Query: 255 NQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLET 314
+ L+ L + L + +N + P+ S+ E L ++ + + ET
Sbjct: 386 SHLAEVPELPQNL---KQLHVETNPLRE-FPDIPESV---EDLRMNSERVVDPYEFAHET 438
Query: 315 LSHLKQFNASHNRL 328
L+ H+
Sbjct: 439 TDKLEDDVFEHHHH 452
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 76/341 (22%), Positives = 123/341 (36%), Gaps = 65/341 (19%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLT------TESSLAD-QWSFLSALTNCRHL 78
S NS + +P +L+ L L+ +++ Q L L N L
Sbjct: 97 VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFL 155
Query: 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN 138
K + + +N L LP + + + A N +L+ +P E+ NL LT + NN L
Sbjct: 156 KIIDVDNNSLK-KLPDLPPSL----EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK 208
Query: 139 GTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTS 198
L + N LE +P +L +L + I N L +P S
Sbjct: 209 KLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD---LPPS 258
Query: 199 LRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKV------------ 246
L L++ N LT +P SL ++ + + L LP N+ L
Sbjct: 259 LEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGL-SELPPNLYYLNASSNEIRSLCDLP 316
Query: 247 --LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNL 304
L L++S N+L + LE L + N +PE +L + L + N L
Sbjct: 317 PSLEELNVSNNKLIELPALPP---RLERLIASFNHLAE-VPELPQNL---KQLHVEYNPL 369
Query: 305 SGKIPKSLETL----------------SHLKQFNASHNRLE 329
+ P E++ +LKQ + N L
Sbjct: 370 R-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 36/171 (21%), Positives = 57/171 (33%), Gaps = 35/171 (20%)
Query: 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKV- 246
I P S T L+E S+ LT +P +++ + + + P +
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 247 ------------LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISL 294
L+L+ LS LE+L + N +PE SL SL
Sbjct: 61 AVSRLRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLT-ELPELPQSLKSL 116
Query: 295 ESLDLSGNNLSGKIPKSLETL----------------SHLKQFNASHNRLE 329
+ + LS +P LE L S LK + +N L+
Sbjct: 117 LVDNNNLKALSD-LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 61/306 (19%), Positives = 109/306 (35%), Gaps = 27/306 (8%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+++ + R + L L + + A ++ L +G
Sbjct: 51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--------YAFAYAHTIQKLYMGF 102
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISPT 144
N + + P V N L ++P+ I N LT LS+ NN+L T
Sbjct: 103 NAIRYLPPHVFQNVP-LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
L+ L L N L + L + ++ ++ N LS LA ++ EL
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS-----TLAIPIAVEELDA 212
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG-DIST 263
N + L + L N+L D + + L +DLS N+L
Sbjct: 213 SHNSINVVRGPVNVELTI---LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
+ LE L +++N+ + + +L+ LDLS N+L + ++ L+
Sbjct: 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325
Query: 324 SHNRLE 329
HN +
Sbjct: 326 DHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-26
Identities = 57/306 (18%), Positives = 101/306 (33%), Gaps = 30/306 (9%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+L+ F + L + +N + N L L L
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--------HVFQNVPLLTVLVLER 126
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISPT 144
N L + + N N L+ I + L L L +N L +
Sbjct: 127 NDLSSLPRGIFHNTP-KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL- 182
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
+ L ++ YN L L + + + N ++ + L L L
Sbjct: 183 -SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKL 233
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDIST 263
N LT + L + ++ ++LS N L + + + ++ L L +S N+L
Sbjct: 234 QHNNLTD--TAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLVALNLY 290
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
+ L+ L L+ N + + LE+L L N++ + L T LK
Sbjct: 291 GQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTL 346
Query: 324 SHNRLE 329
SHN +
Sbjct: 347 SHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 6e-26
Identities = 62/306 (20%), Positives = 121/306 (39%), Gaps = 28/306 (9%)
Query: 27 LSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSN 86
+ + + L + + + + + + L + R ++ L+L
Sbjct: 28 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA--------ALLDSFRQVELLNLNDL 79
Query: 87 PLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISPTM 145
+ I + Q Y ++ +P + N+ LT+L L NDL+
Sbjct: 80 QIEEIDTYAFAYAH-TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137
Query: 146 GRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
+L LS+ NNLE I D + ++L+ N+L+ H+ + + SL ++
Sbjct: 138 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANV 193
Query: 205 GSNKLTS-SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIST 263
N L++ +IP ++ L + S NS+N + + L +L L N L+ D +
Sbjct: 194 SYNLLSTLAIPIAVEEL------DASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW 243
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
+ L + L+ N+ + + + LE L +S N L + + + LK +
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302
Query: 324 SHNRLE 329
SHN L
Sbjct: 303 SHNHLL 308
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 5e-21
Identities = 41/215 (19%), Positives = 83/215 (38%), Gaps = 13/215 (6%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
I + + + + L + ++ K + + L + +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 177 GIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND 235
+ L ++ I A ++++L++G N + P ++ + ++ L N L+
Sbjct: 73 LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130
Query: 236 SLPSNI-QTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLIS 293
SLP I L L +S N L + T A L+ L L+SN+ + + S
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL--SLIPS 187
Query: 294 LESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
L ++S N LS +L +++ +ASHN +
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSI 217
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 1/167 (0%)
Query: 164 SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYI 223
I +L + + Y + + + +L + + + ++ + + L S +
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71
Query: 224 LMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQG 282
++NL+ + + ++ L + N + + L L L N
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 283 PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
+ L +L +S NNL + + + L+ S NRL
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 8e-15
Identities = 46/244 (18%), Positives = 90/244 (36%), Gaps = 26/244 (10%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTES--------SLADQWSFLSALTNC 75
+ +S+N+ +TF L +L L+ N LT ++ LS L
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204
Query: 76 RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG---NLRGLTLLSL 132
++ L N + + PV L+ N + N GL + L
Sbjct: 205 IAVEELDASHNSINVVRGPV-------NVELTILK--LQHNNLTDTAWLLNYPGLVEVDL 255
Query: 133 FNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPC 192
N+L + ++++L L + N L ++ + + + L+ N L H+
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 313
Query: 193 LASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN-DSLPSNIQTLKVLRVLD 251
L L+L N + + S+ +L+ + LS N + +SL + + + V D
Sbjct: 314 QPQFDRLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWDCNSLRALFRNVARPAVDD 370
Query: 252 LSRN 255
++
Sbjct: 371 ADQH 374
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 3/136 (2%)
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG-DISTI 264
I S+L +++ + + TL +++ + + + +
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65
Query: 265 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324
+ +E L+L Q + + +++ L + N + P + + L
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125
Query: 325 HNRLEGKILVKGSFKN 340
N L L +G F N
Sbjct: 126 RNDLS--SLPRGIFHN 139
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 16/146 (10%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DLS N + + F ++ L L ++ N L + LK L L
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---------LYGQPIPTLKVLDLSH 304
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N L + F +N Y + + + + L L+L +ND + +
Sbjct: 305 NHLLHV-ERNQPQFD-RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC--NSLR 357
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCH 171
+ + ++ + I Y L H
Sbjct: 358 ALFRNVARPAVDDADQHCKIDYQLEH 383
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 58/328 (17%), Positives = 99/328 (30%), Gaps = 28/328 (8%)
Query: 26 DLSSNSFSGHIP-NTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
L +N S ++ L L L E +L SAL +L
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK--FDKSALEGLCNLTIEEFR 263
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG----- 139
L L +I F+ + ++ G L L N
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323
Query: 140 --------------TISPTMGRLKQLRGLSLKYNNLE--GSIPYDLCHLKLMYGIRLTGN 183
+ + L L L L N L G + + L+ N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Query: 184 KLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLW-SLEYILMINLSSNSLNDSLPSNIQ 242
+ + L L L + L S++ SL ++ +++S +
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 243 TLKVLRVLDLSRNQLSGDIS--TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 300
L L VL ++ N + L +L L L+ Q + P + SL SL+ L+++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 301 GNNLSGKIPKSLETLSHLKQFNASHNRL 328
N L + L+ L++ N
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-25
Identities = 70/352 (19%), Positives = 111/352 (31%), Gaps = 46/352 (13%)
Query: 26 DLSSNSF-SGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
+++ N S +P F NL +L L L+ N + + L + +L L
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPL--LNLSLDLS 185
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQE-IGNLRGLTLLSL---FNNDLNGT 140
NP+ I P N N+ + I L GL + L +
Sbjct: 186 LNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 141 ISPTMGRLKQLRGLSLKYNNLEG------SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA 194
L+ L L+++ L I L + L + +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY 302
Query: 195 --------------------SLTSLRELHLGSNKLTSSIP-SSLWSLEYILMINLSSNSL 233
L SL+ L SNK ++ L SLE++ +LS N L
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL---DLSRNGL 359
Query: 234 N--DSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESV-GS 290
+ + L+ LDLS N + S L LE L + + SV S
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 291 LISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
L +L LD+S + LS L+ + N + + F
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELR 470
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-24
Identities = 56/281 (19%), Positives = 104/281 (37%), Gaps = 22/281 (7%)
Query: 30 NSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLG 89
+ + I + F L ++SS L + S +HL+ ++
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-------SYNFGWQHLELVNCKFGQFP 320
Query: 90 GILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN--GTISPTMGR 147
+ S + + K GN E+ +L L L L N L+ G S +
Sbjct: 321 TLKLK-------SLKRLTFTSNKG-GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 148 LKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPC-LASLTSLRELHLGS 206
L+ L L +N + ++ + L+ + + + L SL +L L +
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 207 NKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSG-DISTI 264
+ L + ++ ++ NS ++ +I L+ L LDLS+ QL +
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 265 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
+L L+ L++ASNQ + L SL+ + L N
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 70/352 (19%), Positives = 113/352 (32%), Gaps = 47/352 (13%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+DLS N +F + L L L+ + T A + HL L L
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLSHLSTLIL 83
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN-GTIS 142
NP+ + S S Q A L IG+L+ L L++ +N + +
Sbjct: 84 TGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 143 PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLK----LMYGIRLTGNKLSGHIPPCLASLTS 198
L L L L N ++ DL L L + L+ N ++ I P
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201
Query: 199 LRELHLGSNKLTSSIP-------SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLD 251
L +L L +N + ++ + L +L + +L S ++ L L + +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 252 LSRNQLSGDISTIGA----LVDLETLSLASNQFQGPIPESV------------------- 288
L + I L ++ + SL S + S
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 289 GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKN 340
L SL+ L + N S L L+ + S N L K S
Sbjct: 322 LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 49/226 (21%), Positives = 80/226 (35%), Gaps = 16/226 (7%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
IP + L L N L S + +L+ L L ++ L +
Sbjct: 22 IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND- 235
+ LTGN + + L+SL++L L S + L+ + +N++ N +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 236 SLPSNIQTLKVLRVLDLSRNQLS----GDISTIGAL-VDLETLSLASNQFQGPIPESVGS 290
LP L L LDLS N++ D+ + + + +L L+ N I
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198
Query: 291 LISLESLDLSGNNLSGKIPK-------SLETLSHLKQFNASHNRLE 329
I L L L N S + K LE + + LE
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 1e-18
Identities = 45/248 (18%), Positives = 82/248 (33%), Gaps = 19/248 (7%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+L + F L+ L L T N + + L+ L L
Sbjct: 310 ELVNCKFGQF---PTLKLKSLKRLTFTSNKGGN----------AFSEVDLPSLEFLDLSR 356
Query: 86 NPLGGI-LPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
N L + S + + + L L L +++L +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 145 M-GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTSLREL 202
+ L+ L L + + + + L + +++ GN + P L +L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 203 HLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDI 261
L +L P++ SL + ++N++SN L S+P I L L+ + L N
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 262 STIGALVD 269
I L
Sbjct: 535 PRIDYLSR 542
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 7/189 (3%)
Query: 151 LRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLT 210
+ L L +N L Y + + L+ ++ SL+ L L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 211 SSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS--GDISTIGALV 268
S + L + + +L I LK L+ L+++ N + L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 269 DLETLSLASNQFQGPIPESVGSLISLE----SLDLSGNNLSGKIPKSLETLSHLKQFNAS 324
+LE L L+SN+ Q + L + SLDLS N ++ I L +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLR 208
Query: 325 HNRLEGKIL 333
+N ++
Sbjct: 209 NNFDSLNVM 217
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 12/203 (5%)
Query: 24 VMDLSSN--SFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKAL 81
+DLS N SF G + L L L++N + + S L+ L
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---------TMSSNFLGLEQLEHL 401
Query: 82 SLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTI 141
+ L + + + + + L L +L + N
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 142 SPTM-GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200
P + L+ L L L LE P L + + + N+L LTSL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 201 ELHLGSNKLTSSIPSSLWSLEYI 223
++ L +N S P + ++
Sbjct: 522 KIWLHTNPWDCSCPRIDYLSRWL 544
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 8e-26
Identities = 61/306 (19%), Positives = 109/306 (35%), Gaps = 27/306 (8%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+++ + R + L L + + A ++ L +G
Sbjct: 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--------YAFAYAHTIQKLYMGF 108
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISPT 144
N + + P V N L ++P+ I N LT LS+ NN+L T
Sbjct: 109 NAIRYLPPHVFQNVP-LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
L+ L L N L + L + ++ ++ N LS LA ++ EL
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLST-----LAIPIAVEELDA 218
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG-DIST 263
N + L + L N+L D + + L +DLS N+L
Sbjct: 219 SHNSINVVRGPVNVELTIL---KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
+ LE L +++N+ + + +L+ LDLS N+L + ++ L+
Sbjct: 274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331
Query: 324 SHNRLE 329
HN +
Sbjct: 332 DHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-24
Identities = 59/306 (19%), Positives = 103/306 (33%), Gaps = 30/306 (9%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+L+ F + L + +N + N L L L
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--------HVFQNVPLLTVLVLER 132
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISPT 144
N L LP I + + N L+ I + L L L +N L +
Sbjct: 133 NDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL- 188
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
+ L ++ YN L L + + + N ++ + L L L
Sbjct: 189 -SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKL 239
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDIST 263
N LT + L + ++ ++LS N L + + + ++ L L +S N+L
Sbjct: 240 QHNNLTD--TAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLVALNLY 296
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
+ L+ L L+ N + + LE+L L N++ + L T LK
Sbjct: 297 GQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTL 352
Query: 324 SHNRLE 329
SHN +
Sbjct: 353 SHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 60/306 (19%), Positives = 123/306 (40%), Gaps = 28/306 (9%)
Query: 27 LSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSN 86
+ + + L + + + + + + L + R ++ L+L
Sbjct: 34 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA--------ALLDSFRQVELLNLNDL 85
Query: 87 PLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISPTM 145
+ I + Q Y ++ +P + N+ LT+L L NDL+ ++ +
Sbjct: 86 QIEEIDTYAFAYAH-TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 142
Query: 146 -GRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+L LS+ NNLE I D + ++L+ N+L+ H+ + + SL +
Sbjct: 143 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHAN 198
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIST 263
+ N L++ + ++E + + S NS+N + + L +L L N L+ D +
Sbjct: 199 VSYNLLSTL--AIPIAVEEL---DASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW 249
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323
+ L + L+ N+ + + + LE L +S N L + + + LK +
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308
Query: 324 SHNRLE 329
SHN L
Sbjct: 309 SHNHLL 314
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 2e-19
Identities = 51/289 (17%), Positives = 98/289 (33%), Gaps = 44/289 (15%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
V+ L N S F N L++L ++ NNL + D L+ L L
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE---RIED-----DTFQATTSLQNLQL 178
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG---- 139
SN L + + + + N + N+ + + L +N +N
Sbjct: 179 SSNRLTHVDL-------SLIPSLFHAN--VSYNLLSTLAIPIAVEELDASHNSINVVRGP 229
Query: 140 ---------------TISPTMGRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYGIRLTGN 183
T + + L + L YN LE I Y ++ + + ++ N
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 288
Query: 184 KLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQT 243
+L + + +L+ L L N L + + + + + L NS+ +L + T
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKLS--T 343
Query: 244 LKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLI 292
L+ L LS N + S ++ ++ I + +
Sbjct: 344 HHTLKNLTLSHNDWDCN-SLRALFRNVARPAVDDADQHCKIDYQLEHGL 391
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 1/167 (0%)
Query: 164 SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYI 223
I +L + + Y + + + +L + + + ++ + + L S +
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77
Query: 224 LMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQG 282
++NL+ + + ++ L + N + + L L L N
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137
Query: 283 PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
+ L +L +S NNL + + + L+ S NRL
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 1/120 (0%)
Query: 211 SSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG-DISTIGALVD 269
I S+L +++ + + TL +++ + + + + +
Sbjct: 17 KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76
Query: 270 LETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
+E L+L Q + + +++ L + N + P + + L N L
Sbjct: 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 9e-26
Identities = 60/312 (19%), Positives = 102/312 (32%), Gaps = 56/312 (17%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
LS NSF I T+ + S W ++ L L L
Sbjct: 12 SLSQNSFYNTISGTYADY---FSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
L ++P + +T+L + N L ++
Sbjct: 69 LNLS--------------------------SLPDNLPP--QITVLEITQNAL-ISLPELP 99
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
L L N L ++P LK + + N+L+ +P L ++
Sbjct: 100 A---SLEYLDACDNRLS-TLPELPASLKHLD---VDNNQLT-MLPE---LPALLEYINAD 148
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIG 265
+N+LT +P SLE + ++ +N L LP ++L LD+S N L +
Sbjct: 149 NNQLTM-LPELPTSLEVL---SVRNNQLT-FLPELPESL---EALDVSTNLLESLPAVPV 200
Query: 266 ALVDLET----LSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQF 321
E N+ IPE++ SL ++ L N LS +I +SL + +
Sbjct: 201 RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259
Query: 322 NASHNRLEGKIL 333
+
Sbjct: 260 HGPRIYFSMSDG 271
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 40/284 (14%), Positives = 85/284 (29%), Gaps = 24/284 (8%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNC--------R 76
+D+ +N + +P L +++ N LT L LS N
Sbjct: 125 LDVDNNQLT-MLPELPALLEYIN---ADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPE 180
Query: 77 HLKALSLGSNPLGGILPPVIG---NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLF 133
L+AL + +N L LP V + + F ++ +IP+ I +L + L
Sbjct: 181 SLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238
Query: 134 NNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCL 193
+N L+ I ++ + S + + + +
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW--FPENKQSDV 296
Query: 194 ASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253
+ + E +N ++ + ++ + + LR +
Sbjct: 297 SQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQV--AAWLEKLSASAELRQQSFA 354
Query: 254 RNQLSGDI---STIGALVDLETLSLASNQFQGPIPESVGSLISL 294
+ + +L L +G G+L+SL
Sbjct: 355 VAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-25
Identities = 55/320 (17%), Positives = 101/320 (31%), Gaps = 21/320 (6%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQW-SFLSALT-NCRHLKAL 81
+++ + S + + ++R + L L + + S + L +L
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211
Query: 82 SLGSNPLGGILPPVIGN-------FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFN 134
P+ + P+ SF + E + L
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271
Query: 135 NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA 194
++ + +R L + L + L+ + I + +K+
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331
Query: 195 SLTSLRELHLGSNKLTSSI---PSSLWSLEYILMINLSSNSLND--SLPSNIQTLKVLRV 249
L SL L L N + + + + + LS N L + TLK L
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391
Query: 250 LDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 309
LD+SRN + + L+L+S + + +LE LD+S NNL
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKT--CIPQTLEVLDVSNNNLD-SFS 447
Query: 310 KSLETLSHLKQFNASHNRLE 329
L L L S N+L+
Sbjct: 448 LFLPRLQEL---YISRNKLK 464
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-24
Identities = 62/365 (16%), Positives = 110/365 (30%), Gaps = 57/365 (15%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DLS N + +L L+L + + T A + L+ L L
Sbjct: 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG--------DAFYSLGSLEHLDLSD 83
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKG-NIPQEIGNLRGLTLLSLFNNDLNGTISP- 143
N L + G S S + + + NL L L + N + I
Sbjct: 84 NHLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
L L L +K +L L ++ ++ + L ++ + + L+S+R L
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202
Query: 204 LGSNKLTS----------------------------------SIPSSLWSLEYILMINLS 229
L L + + L + + +
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262
Query: 230 SNSLNDSLPSNIQTLK--------VLRVLDLSRNQLSGDIS-TIGALVDLETLSLASNQF 280
N L D PS + +R L + + L D+S L ++ +++ +++
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322
Query: 281 QGPIPESVGSLISLESLDLSGNNLSGKIPKS---LETLSHLKQFNASHNRLEGKILVKGS 337
L SLE LDLS N + + K+ L+ S N L
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382
Query: 338 FKNFS 342
Sbjct: 383 LLTLK 387
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 50/338 (14%), Positives = 116/338 (34%), Gaps = 37/338 (10%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+ L + + + L + L L NL +S+ + L
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCK----LKGNIPQEIGNLRGLTLLSLFNNDLNG 139
+L + S F + + L + +++ +
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295
Query: 140 -----TISPTMGRLKQLRGLSLKYNNLEGSIPYDLC-HLKLMYGIRLTGNKLSGHIPP-- 191
+S L++++ ++++ + + +P HLK + + L+ N +
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354
Query: 192 -CLASLTSLRELHLGSNKLTS--SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLR 248
C + SL+ L L N L S L +L+ + +++S N+ + +P + Q + +R
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413
Query: 249 VLDLSRNQLSG-----------------DISTIGA-LVDLETLSLASNQFQGPIPESVGS 290
L+LS + ++ + L L+ L ++ N+ + +P++
Sbjct: 414 FLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT-LPDAS-L 471
Query: 291 LISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
L + +S N L + L+ L++ N
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 1e-18
Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 8/192 (4%)
Query: 154 LSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSI 213
+ + SIP L M + L+ NK++ L + +L+ L L S+++ +
Sbjct: 10 CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66
Query: 214 PSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS--GDISTIGALVDLE 271
+ +SL + ++LS N L+ S L L+ L+L N G S L +L+
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126
Query: 272 TLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330
TL + + + I L SL L++ +L +SL+++ + +
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA- 185
Query: 331 KILVKGSFKNFS 342
L++ S
Sbjct: 186 -FLLEIFADILS 196
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 2e-16
Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 8/218 (3%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
IP + + L L N + + L+ L LK + + L +
Sbjct: 20 IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77
Query: 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTS-SIPSSLWSLEYILMINLSSNSLND 235
+ L+ N LS L+SL+ L+L N + + S +L + + + +
Sbjct: 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137
Query: 236 SLPSN-IQTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLIS 293
+ L L L++ L ++ ++ D+ L+L ++ + L S
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197
Query: 294 LESLDLSGNNLSG---KIPKSLETLSHLKQFNASHNRL 328
+ L+L NL+ E S +K+ + L
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 39/250 (15%), Positives = 82/250 (32%), Gaps = 22/250 (8%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+ + + + L + + + + + S + + L+ L L
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC--------SFSQHLKSLEFLDL 341
Query: 84 GSNPLGGILPPVIGNFSA--SFQNFYAFNCKLK--GNIPQEIGNLRGLTLLSLFNNDLNG 139
N + A S Q L+ + + L+ LT L + N +
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400
Query: 140 TISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199
+ + +++R L+L + L+++ ++ N L L L
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD---VSNNNLD-SFS---LFLPRL 453
Query: 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG 259
+EL++ NKL + +P + +L++ +S N L L L+ + L N
Sbjct: 454 QELYISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511
Query: 260 DISTIGALVD 269
I L
Sbjct: 512 SCPRIDYLSR 521
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-24
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 10/217 (4%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYD-LCHLKLM 175
+P I LL+L N + + L+ L L L N++ +I L +
Sbjct: 58 VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANL 114
Query: 176 YGIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWS-LEYILMINLSSNSL 233
+ L N+L+ IP L+ L+EL L +N + S IPS ++ + + ++L
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKR 172
Query: 234 NDSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLI 292
+ + L LR L+L+ L +I + L+ L+ L L+ N P S L+
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 293 SLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L+ L + + + + + L L + N +HN L
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-20
Identities = 62/273 (22%), Positives = 93/273 (34%), Gaps = 46/273 (16%)
Query: 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTN 74
I +++L N N+F +LRHL L L+ N++ T A
Sbjct: 60 DGISTNT-RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI--------GAFNG 110
Query: 75 CRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFN 134
+L L L N L I G F L L L L N
Sbjct: 111 LANLNTLELFDNRLTTIPN---GAFV----------------------YLSKLKELWLRN 145
Query: 135 NDLNGTISPTM-GRLKQLRGLSLKYNNLEGSIP----YDLCHLKLMYGIRLTGNKLSGHI 189
N + +I R+ LR L L I L +L+ + L L I
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN---LAMCNLR-EI 200
Query: 190 PPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRV 249
P L L L EL L N L++ P S L ++ + + + + + L+ L
Sbjct: 201 PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259
Query: 250 LDLSRNQLSG-DISTIGALVDLETLSLASNQFQ 281
++L+ N L+ L LE + L N +
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-24
Identities = 60/284 (21%), Positives = 109/284 (38%), Gaps = 16/284 (5%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+L+ N S P F NL +L +L L N L T +L L +
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL--------GVFTGLSNLTKLDISE 113
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISP- 143
N + +L + + + ++ + L I L L L+L +L +I
Sbjct: 114 NKIVILLDYMFQDLY-NLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTE 170
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+ L L L L++ N+ Y L + + ++ + P +L L
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSG-DI 261
+ LT+ ++ L Y+ +NLS N + ++ ++ L L+ + L QL+ +
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLAVVEP 289
Query: 262 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L L L+++ NQ S+ +LE+L L N L+
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 62/321 (19%), Positives = 105/321 (32%), Gaps = 64/321 (19%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DL N + F + HL L L N ++ A N +L+ L L S
Sbjct: 38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP--------GAFNNLFNLRTLGLRS 89
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N L I G F+ L LT L + N + + M
Sbjct: 90 NRLKLIPL---GVFT----------------------GLSNLTKLDISENKIV-ILLDYM 123
Query: 146 -GRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYGIRLTGNKLSGHIPP-CLASLTSLREL 202
L L+ L + N+L I + L + + L L+ IP L+ L L L
Sbjct: 124 FQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVL 181
Query: 203 HLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIS 262
L + + S L + ++ +S D++ N L L ++ L+
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT---- 237
Query: 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFN 322
++ + L+ L L+LS N +S L L L++
Sbjct: 238 -----------AVPYLAVRH--------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278
Query: 323 ASHNRLEGKILVKGSFKNFSA 343
+L ++ +F+ +
Sbjct: 279 LVGGQL--AVVEPYAFRGLNY 297
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 1e-21
Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 9/217 (4%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYD-LCHLKLM 175
+P+ I LL L N + L L L N + ++ +L +
Sbjct: 26 VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNL 82
Query: 176 YGIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234
+ L N+L IP L++L +L + NK+ + L + + + N L
Sbjct: 83 RTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 235 DSLPSNI-QTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLI 292
+ L L L L + L+ + L L L L S L
Sbjct: 142 -YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200
Query: 293 SLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L+ L++S + + +L + +H L
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-24
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 8/216 (3%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYD-LCHLKLM 175
+PQ I L+L N++ + T L L L L N++ I L +
Sbjct: 69 VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASL 125
Query: 176 YGIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234
+ L N L+ IP L+ LREL L +N + S + + ++ ++L
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184
Query: 235 DSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLIS 293
+ + + L L+ L+L + D+ + LV LE L ++ N F P S L S
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 294 LESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L+ L + + +S + + L+ L + N +HN L
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 9e-20
Identities = 59/273 (21%), Positives = 85/273 (31%), Gaps = 46/273 (16%)
Query: 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTN 74
IP ++L N+ +TF +L HL L L N++ A
Sbjct: 71 QGIPSNT-RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV--------GAFNG 121
Query: 75 CRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFN 134
L L L N L I G F L L L L N
Sbjct: 122 LASLNTLELFDNWLTVIPS---GAFE----------------------YLSKLRELWLRN 156
Query: 135 NDLNGTISPTM-GRLKQLRGLSLKYNNLEGSIP----YDLCHLKLMYGIRLTGNKLSGHI 189
N + +I R+ L L L I L +LK + L + +
Sbjct: 157 NPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN---LGMCNIK-DM 211
Query: 190 PPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRV 249
P L L L EL + N P S L + + + ++ ++ + L L
Sbjct: 212 PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270
Query: 250 LDLSRNQLSG-DISTIGALVDLETLSLASNQFQ 281
L+L+ N LS L L L L N +
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 1e-19
Identities = 53/212 (25%), Positives = 82/212 (38%), Gaps = 16/212 (7%)
Query: 123 NLRGLTLLSLFNNDLNGTISP-TMGRLKQLRGLSLKYNNLEGSIP----YDLCHLKLMYG 177
+L L +L L N + I L L L L N L IP L L+ ++
Sbjct: 97 HLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW- 153
Query: 178 IRLTGNKLSGHIPP-CLASLTSLRELHLGS-NKLTSSIPSSLWSLEYILMINLSSNSLND 235
L N + IP + SL L LG KL + L + +NL ++
Sbjct: 154 --LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209
Query: 236 SLPSNIQTLKVLRVLDLSRNQLSGDIS-TIGALVDLETLSLASNQFQGPIPESVGSLISL 294
+P+ + L L L++S N + L L+ L + ++Q + L SL
Sbjct: 210 DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268
Query: 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASHN 326
L+L+ NNLS L +L + + HN
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 64/308 (20%), Positives = 116/308 (37%), Gaps = 42/308 (13%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DL +N S + F L+HL +L+L N ++ + ++ A + R L+ L +
Sbjct: 60 DLQNNDISELRKDDFKGLQHLYALVLVNNKIS---KIHEK-----AFSPLRKLQKLYISK 111
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDL-NGTISP 143
N L I P + S S + +++ +P+ + LR + + + N L N P
Sbjct: 112 NHLVEIPPNL---PS-SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDL-CHLKLMYGIRLTGNKLSGHIPP-CLASLTSLRE 201
+L L + L IP DL L ++ L NK+ I L + L
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPKDLPETLNELH---LDHNKIQ-AIELEDLLRYSKLYR 221
Query: 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261
L LG N++ SL L + ++L +N L +P+ + LK+L+V+ L N ++
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT--- 277
Query: 262 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI--PKSLETLSHLK 319
+ N F + L N + P + ++
Sbjct: 278 ------------KVGVNDFCPVGFGV--KRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323
Query: 320 QFNASHNR 327
+ +
Sbjct: 324 AIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 3e-20
Identities = 56/219 (25%), Positives = 85/219 (38%), Gaps = 18/219 (8%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISP-TMGRLKQLRGLSLKYNNLEGSIP----YDLCH 171
+P+EI TLL L NND++ + L+ L L L N + I L
Sbjct: 48 VPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRK 103
Query: 172 LKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231
L+ +Y ++ N L IPP L +SL EL + N++ L + I + N
Sbjct: 104 LQKLY---ISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157
Query: 232 SLNDS-LPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGS 290
L +S L L +S +L+ I L L L N+ Q E +
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK-DLPETLNELHLDHNKIQAIELEDLLR 215
Query: 291 LISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L L L N + SL L L++ + +N+L
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 15/148 (10%)
Query: 198 SLRELHLGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254
LR + L + I L +L +N +++ + + L+ L L L
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLL------DLQNNDISELRKDDFKGLQHLYALVLVN 87
Query: 255 NQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPK-SL 312
N++S L L+ L ++ N IP SL L + N + K+PK
Sbjct: 88 NKISKIHEKAFSPLRKLQKLYISKNHLVE-IPP--NLPSSLVELRIHDNRIR-KVPKGVF 143
Query: 313 ETLSHLKQFNASHNRLEGKILVKGSFKN 340
L ++ N LE G+F
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDG 171
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 36/193 (18%), Positives = 56/193 (29%), Gaps = 45/193 (23%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+ +S +G + L L L N + L L L L
Sbjct: 176 YLRISEAKLTGIPKDLPETLNELH---LDHNKIQAIEL--------EDLLRYSKLYRLGL 224
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
G N + I + + L L L L NN L+ +
Sbjct: 225 GHNQIRMIEN-------------GSLS------------FLPTLRELHLDNNKLS-RVPA 258
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKL------MYGIRLTGNKLS-GHIPPCL-AS 195
+ LK L+ + L NN+ D C + GI L N + + P
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318
Query: 196 LTSLRELHLGSNK 208
+T + G+ K
Sbjct: 319 VTDRLAIQFGNYK 331
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 3e-22
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 9/215 (4%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
+P+++ LL L NN + LK L L L N + P L +
Sbjct: 46 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236
+ L+ N+L +P + +L+EL + N++T S L ++++ L +N L S
Sbjct: 104 RLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Query: 237 -LPSNI-QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISL 294
+ + Q +K L + ++ ++ I G L L L N+ S+ L +L
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNIT-TIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L LS N++S SL HL++ + ++N+L
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 6e-22
Identities = 54/331 (16%), Positives = 104/331 (31%), Gaps = 81/331 (24%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DL +N + F NL++L +L+L N ++ ++ A L+ L L
Sbjct: 58 DLQNNKITEIKDGDFKNLKNLHTLILINNKIS---KISPG-----AFAPLVKLERLYLSK 109
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP-T 144
N L + + + L L + N++ +
Sbjct: 110 NQLKELPEKM----------------------------PKTLQELRVHENEIT-KVRKSV 140
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTSLRELH 203
L Q+ + L N L+ S I + L +
Sbjct: 141 FNGLNQMIVVELGTNPLK-----------------------SSGIENGAFQGMKKLSYIR 177
Query: 204 LGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSG 259
+ +T+ +P SL L +L N + + + + L L L LS N +S
Sbjct: 178 IADTNITTIPQGLPPSLTEL------HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA 230
Query: 260 -DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG------KIPKSL 312
D ++ L L L +N+ +P + ++ + L NN+S P
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289
Query: 313 ETLSHLKQFNASHNRLEGKILVKGSFKNFSA 343
+ + N ++ + +F+
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 37/243 (15%), Positives = 78/243 (32%), Gaps = 53/243 (21%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+ N + + F L + + L N L S + + A + L + +
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLK-SSGIEN-----GAFQGMKKLSYIRIAD 180
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP-T 144
+ I G LT L L N + + +
Sbjct: 181 TNITTIPQ----------------------------GLPPSLTELHLDGNKIT-KVDAAS 211
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+ L L L L +N++ ++ L + + + L NKL +P LA ++ ++
Sbjct: 212 LKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269
Query: 204 LGSNKLTS---------SIPSSLWSLEYILMINLSSNSLN-DSLPSNI-QTLKVLRVLDL 252
L +N +++ + S + +L SN + + + + + V + L
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGV---SLFSNPVQYWEIQPSTFRCVYVRAAVQL 326
Query: 253 SRN 255
Sbjct: 327 GNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 6e-11
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 23/152 (15%)
Query: 198 SLRELHLGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254
LR + L +P L +L +N + + + + LK L L L
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALL------DLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 255 NQLSGDISTIGA-----LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 309
N+ IS I LV LE L L+ NQ + +PE +L+ L + N ++ K+
Sbjct: 86 NK----ISKISPGAFAPLVKLERLYLSKNQLKE-LPE--KMPKTLQELRVHENEIT-KVR 137
Query: 310 K-SLETLSHLKQFNASHNRLEGKILVKGSFKN 340
K L+ + N L+ + G+F+
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-21
Identities = 35/191 (18%), Positives = 78/191 (40%), Gaps = 11/191 (5%)
Query: 116 NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLM 175
NIP + L + T + T ++ L ++L N+ + + +
Sbjct: 16 NIPDS--TFKAYLNGLL---GQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNI 68
Query: 176 YGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND 235
+ + + + P ++ L++L L + +TS +L L + ++++S ++ +D
Sbjct: 69 KDLTINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 236 SLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLE 295
S+ + I TL + +DLS N DI + L +L++L++ + + L
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLN 184
Query: 296 SLDLSGNNLSG 306
L + G
Sbjct: 185 QLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-17
Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 194 ASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253
++ + LG + + + + SL YI L++ ++ D + I+ ++ L ++
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVTDL--TGIEYAHNIKDLTIN 74
Query: 254 RNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLE 313
+ + + I L +LE L + ++ L SL LD+S + I +
Sbjct: 75 NIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 314 TLSHLKQFNASHN 326
TL + + S+N
Sbjct: 134 TLPKVNSIDLSYN 146
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 6e-16
Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 8/137 (5%)
Query: 194 ASLTSLRELHLGSNKLTSSIP-SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252
A + SL + L + +T +++ + +++ + + I L L L +
Sbjct: 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDL---TINNIHATNY--NPISGLSNLERLRI 95
Query: 253 SRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS 311
++ I + L L L ++ + I + +L + S+DLS N I
Sbjct: 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MP 154
Query: 312 LETLSHLKQFNASHNRL 328
L+TL LK N + +
Sbjct: 155 LKTLPELKSLNIQFDGV 171
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 16/173 (9%)
Query: 39 TFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98
T + L+ + L N+T L+ + ++K L++ + P I
Sbjct: 39 TEAQMNSLTYITLANINVTD----------LTGIEYAHNIKDLTINNIHATNYNP--ISG 86
Query: 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKY 158
S + + + + + L LTLL + ++ + +I + L ++ + L Y
Sbjct: 87 LS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145
Query: 159 NNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTS 211
N I L L + + + + + + + L +L+ S +
Sbjct: 146 NGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-10
Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 219 SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASN 278
+ + L L +S + + + +L + L+ ++ D++ I +++ L++ +
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVT-DLTGIEYAHNIKDLTINNI 76
Query: 279 QFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333
+ L +LE L + G +++ +L L+ L + SH+ + IL
Sbjct: 77 HATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 1e-21
Identities = 53/234 (22%), Positives = 86/234 (36%), Gaps = 18/234 (7%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE-GSIP----YDLCH 171
+P I T L L +N L +L QL LSL N L +
Sbjct: 22 VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79
Query: 172 LKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSL-WSLEYILMINLSS 230
LK + L+ N + + L L L + L S+ SL ++ +++S
Sbjct: 80 LKYLD---LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 231 NSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDIS--TIGALVDLETLSLASNQFQGPIPES 287
+ I L L VL ++ N + L +L L L+ Q + P +
Sbjct: 136 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNF 341
SL SL+ L++S NN + L+ L+ + S N + K ++F
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHF 246
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 4e-20
Identities = 52/283 (18%), Positives = 95/283 (33%), Gaps = 58/283 (20%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+L SN F L L+ L L+ N L+ + + + LK L L
Sbjct: 34 ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ------SDFGTTSLKYLDLSF 87
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N + + L L L +++L ++
Sbjct: 88 NGVI--------------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121
Query: 146 -GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTSLRELH 203
L+ L L + + + + L + +++ GN + P L +L L
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDIS 262
L +L P++ SL + ++N+S N+ SL + + L L+VLD S N +
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM---- 236
Query: 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
+ + Q SL L+L+ N+ +
Sbjct: 237 -----------TSKKQELQHF-------PSSLAFLNLTQNDFA 261
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 2e-21
Identities = 51/291 (17%), Positives = 97/291 (33%), Gaps = 47/291 (16%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DLS+N + + +L +L+LT N + T + ++ L+ L L
Sbjct: 58 DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE--------DSFSSLGSLEHLDLSY 109
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N L + F L LT L+L N T+ T
Sbjct: 110 NYLSNLSS---SWFK----------------------PLSSLTFLNLLGNPYK-TLGETS 143
Query: 146 --GRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYGIRLTGNKLSGHIPPCLASLTSLREL 202
L +L+ L + + I L + + + + L + P L S+ ++ L
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
Query: 203 HLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQT--------LKVLRVLDLSR 254
L + + + + + L L+ S + T R + ++
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263
Query: 255 NQLSGDISTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNL 304
L + + + L L + NQ + +P+ + L SL+ + L N
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 4e-20
Identities = 65/316 (20%), Positives = 110/316 (34%), Gaps = 56/316 (17%)
Query: 26 DLSSNSFSGHIP-NTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
SS S + IP ++ L L+ N +T S+ S L C +L+AL L
Sbjct: 37 KGSSGSLN-SIPSGLTEAVKSLD---LSNNRITYISN--------SDLQRCVNLQALVLT 84
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
SN + I +F+ +L L L L N L +S +
Sbjct: 85 SNGINTIEE-------------DSFS------------SLGSLEHLDLSYNYL-SNLSSS 118
Query: 145 M-GRLKQLRGLSLKYNNLEGSIPYDL-CHLKLMYGIRLTGNKLSGHIPP-CLASLTSLRE 201
L L L+L N + L HL + +R+ I A LT L E
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178
Query: 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQL--- 257
L + ++ L S P SL S++ + + L L + L+L L
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF 237
Query: 258 ------SGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS 311
+G+ +++ + + + + + + L L+ S N L +P
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG 295
Query: 312 -LETLSHLKQFNASHN 326
+ L+ L++ N
Sbjct: 296 IFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 44/219 (20%), Positives = 80/219 (36%), Gaps = 8/219 (3%)
Query: 151 LRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKL 209
++ L L N + DL + + LT N ++ I +SL SL L L N L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112
Query: 210 TSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDIS--TIGA 266
++ S L + +NL N +++ L L++L + I
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 267 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHN 326
L LE L + ++ Q P+S+ S+ ++ L L + ++ S ++
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 327 RLEG---KILVKGSFKNFSAESFFGNYALCGLPKFRVPP 362
L+ L G + + F N + F+V
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 32/213 (15%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTT--ESSLADQWSFLS------------- 70
DLS N S + F L L+ L L N T E+SL + L
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 71 ---ALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRG 126
L+ L + ++ L P + + + + + + +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHI-LLLEIFVDVTSS 223
Query: 127 LTLLSLFNNDLNGT--------ISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178
+ L L + DL+ + ++ + R + + +L + L + + +
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282
Query: 179 RLTGNKLSGHIPP-CLASLTSLRELHLGSNKLT 210
+ N+L +P LTSL+++ L +N
Sbjct: 283 EFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 6/139 (4%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
+++ ++ + P + +++++S L+L + S++ C L+ L
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVE-CLELRDTDLD 235
Query: 85 SNPLGGILPPVIGNFS--ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS 142
+ + + +F+N + L + + + + GL L N L
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPD 294
Query: 143 PTMGRLKQLRGLSLKYNNL 161
RL L+ + L N
Sbjct: 295 GIFDRLTSLQKIWLHTNPW 313
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 4e-21
Identities = 69/358 (19%), Positives = 125/358 (34%), Gaps = 46/358 (12%)
Query: 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTN 74
P +P + +DLS NS + +F L+ L L + +
Sbjct: 26 PELPAHVN-YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-------NTFRG 77
Query: 75 CRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKG-NIPQEI-GNLRGLTLLSL 132
L L L N + + + + C L G + L L +L L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 133 FNNDLNGTISPTM--GRLKQLRGLSLKYNNLEGSIPYD---------LCHLKL--MYGIR 179
+N++ I P +++ L L +N ++ SI + L+L +
Sbjct: 137 RDNNIK-KIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQD 194
Query: 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLE-----YILMINLSSNSLN 234
+ L TS+ L L N S+ + L+++ S N +
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254
Query: 235 DSLPSNIQTLKV----------LRVLDLSRNQLSGDISTI-GALVDLETLSLASNQFQGP 283
+N + ++ DLS++++ + ++ DLE L+LA N+
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-K 313
Query: 284 IPESV-GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKN 340
I ++ L L L+LS N L + E L L+ + S+N + + L SF
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI--RALGDQSFLG 369
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-18
Identities = 62/324 (19%), Positives = 102/324 (31%), Gaps = 50/324 (15%)
Query: 26 DLSSNSFSGHI--PNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
L+ + G + N F L L L+L NN+ + F N R L L
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK---KIQPASFF----LNMRRFHVLDL 161
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N + I + NF + L +TL + L
Sbjct: 162 TFNKVKSICEEDLLNFQ---------------GKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLK-----LMYGIRLTGNKLSGHIPPCLASL-- 196
+ + L L N + S+ + + N S
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266
Query: 197 --------TSLRELHLGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTL 244
+ ++ L +K+ + S+ S LE + L+ N +N + N L
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL---TLAQNEIN-KIDDNAFWGL 322
Query: 245 KVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGN 302
L L+LS+N L D L LE L L+ N + + + L +L+ L L N
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTN 381
Query: 303 NLSGKIPKSLETLSHLKQFNASHN 326
L + L+ L++ N
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 47/240 (19%), Positives = 80/240 (33%), Gaps = 34/240 (14%)
Query: 123 NLRGLTLLSLFNNDLNGTISP-TMGRLKQLRGLSLKYNNLEGSIPYD----LCHLKLMYG 177
L+ L L + I T L L L L YN + L +L+++
Sbjct: 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLT- 109
Query: 178 IRLTGNKL-SGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLW-SLEYILMINLSSNSLN 234
LT L + LTSL L L N + P+S + ++ +++L+ N +
Sbjct: 110 --LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV- 166
Query: 235 DSLPSNI---QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSL 291
S+ K +L LS L + +
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITL---------------QDMNEYWLGWEKCGNPFKN 211
Query: 292 ISLESLDLSGNNLSGKIPK---SLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFG 348
S+ +LDLSGN + K + ++ S++ G +FK+ +F G
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 49/266 (18%), Positives = 86/266 (32%), Gaps = 23/266 (8%)
Query: 24 VMDLSSNSFSGHIPNTFGNL--RHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKAL 81
V+DL+ N N +H + L L+ L + W + L
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217
Query: 82 SLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTI 141
L N + F + + L N + N G
Sbjct: 218 DLSGNGFKESMA---KRFFDAIAGTKIQSLILS-NSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 142 SPTMGRLKQLRGLSLKYNNL---EGSIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLT 197
+ ++ L + + S+ L+ + L N+++ I LT
Sbjct: 274 AS------GVKTCDLSKSKIFALLKSVFSHFTDLEQLT---LAQNEIN-KIDDNAFWGLT 323
Query: 198 SLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQ 256
L +L+L N L S +L+ + +++LS N + +L L L+ L L NQ
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ 382
Query: 257 L-SGDISTIGALVDLETLSLASNQFQ 281
L S L L+ + L +N +
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 7/155 (4%)
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRN 255
+ + L N + +S L+ + + + + + +N + L L +L L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 256 QLSG-DISTIGALVDLETLSLASNQFQG-PIPESV-GSLISLESLDLSGNNLSGKIPKSL 312
Q + L +LE L+L G + + L SLE L L NN+ P S
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 313 -ETLSHLKQFNASHNRLEGKILVKGSFKNFSAESF 346
+ + + N++ K + + NF + F
Sbjct: 150 FLNMRRFHVLDLTFNKV--KSICEEDLLNFQGKHF 182
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 8e-13
Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 25/204 (12%)
Query: 164 SIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIP----SSLW 218
+P + ++ L+ N ++ + + L L+ L + I L
Sbjct: 27 ELPAHVNYV------DLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79
Query: 219 SLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGA---LVDLETLS 274
SL + L N L + L L VL L++ L G + + L LE L
Sbjct: 80 SLII---LKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135
Query: 275 LASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPKSLETL--SHLKQFNASHNRLEGK 331
L N + P S ++ LDL+ N + + L H S L+
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD- 194
Query: 332 ILVKGSFKNFSAESFFGNYALCGL 355
+ + + F N ++ L
Sbjct: 195 -MNEYWLGWEKCGNPFKNTSITTL 217
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 41/206 (19%), Positives = 73/206 (35%), Gaps = 20/206 (9%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNC-------RHL 78
DLS N F + F + + + + + + + N +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277
Query: 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDL 137
K L + + +L V +F+ + ++ I L L L+L N L
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL 335
Query: 138 NGTISPTMGRLKQLRGLSLKYNNLEGSIPYD----LCHLKLMYGIRLTGNKLSGHIPP-C 192
S L +L L L YN++ ++ L +LK + L N+L +P
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELA---LDTNQLK-SVPDGI 390
Query: 193 LASLTSLRELHLGSNKLTSSIPSSLW 218
LTSL+++ L +N S P +
Sbjct: 391 FDRLTSLQKIWLHTNPWDCSCPRIDY 416
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 5e-21
Identities = 47/250 (18%), Positives = 106/250 (42%), Gaps = 18/250 (7%)
Query: 69 LSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLT 128
+ + ++ G + + + + AF + I + L L
Sbjct: 12 IFPDPALANAIKIAAGKSNVTDTVT--QADLD-GITTLSAFGTGVT-TIE-GVQYLNNLI 66
Query: 129 LLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGH 188
L L +N + ++P + L ++ L L N L+ ++ + L+ + + LT +++
Sbjct: 67 GLELKDNQIT-DLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD- 121
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLR 248
+ P LA L++L+ L+L N++T+ S L L + +++ + ++D + + L L
Sbjct: 122 VTP-LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLT 176
Query: 249 VLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308
L N++S DIS + +L +L + L +NQ + + +L + L+ ++ +
Sbjct: 177 TLKADDNKIS-DISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQP 233
Query: 309 PKSLETLSHL 318
L
Sbjct: 234 VFYNNNLVVP 243
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 51/279 (18%), Positives = 104/279 (37%), Gaps = 50/279 (17%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
++ + T +L +++L +TT + + +L L L
Sbjct: 25 AAGKSNVTD--TVTQADLDGITTLSAFGTGVTT----------IEGVQYLNNLIGLELKD 72
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N + + P + NL +T L L N L +S +
Sbjct: 73 NQITDLAP---------------------------LKNLTKITELELSGNPLK-NVSA-I 103
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
L+ ++ L L + P L L + + L N+++ +I P LA LT+L+ L +G
Sbjct: 104 AGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIG 159
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIG 265
+ +++ + L +L + + N ++D S + +L L + L NQ+S D+S +
Sbjct: 160 NAQVSDL--TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS-DVSPLA 214
Query: 266 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNL 304
+L ++L + +L+ +
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 219 SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASN 278
+L + I +++ D L + L ++ I + L +L L L N
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73
Query: 279 QFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
Q P + +L + L+LSGN L K ++ L +K + + ++
Sbjct: 74 QITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQI 119
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 5e-21
Identities = 50/214 (23%), Positives = 77/214 (35%), Gaps = 8/214 (3%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
+P I + L N ++ + + + L L L N L L L+
Sbjct: 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 177 GIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND 235
+ L+ N + P L L LHL L P L + + L N+L
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ- 142
Query: 236 SLPSNI-QTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESV-GSLI 292
+LP + + L L L L N++S L L+ L L N+ + L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLG 201
Query: 293 SLESLDLSGNNLSGKIPKSLETLSHLKQFNASHN 326
L +L L NNLS ++L L L+ + N
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 3e-18
Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 6/183 (3%)
Query: 151 LRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKL 209
+ + L N + + + + L N L+ I L L +L L N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQ 92
Query: 210 TSSIPSSLWS-LEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSG-DISTIGA 266
S+ + + L + ++L L L + + L L+ L L N L T
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 267 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHN 326
L +L L L N+ + L SL+ L L N ++ P + L L N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 327 RLE 329
L
Sbjct: 212 NLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 46/241 (19%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+ L N S +F R+L+ L L N L + +A T L+ L L
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--------AAFTGLALLEQLDL 87
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N + P F L L L L L + P
Sbjct: 88 SDNAQLRSVDP--ATFH----------------------GLGRLHTLHLDRCGLQ-ELGP 122
Query: 144 TM-GRLKQLRGLSLKYNNLEGSIP----YDLCHLKLMYGIRLTGNKLSGHIPP-CLASLT 197
+ L L+ L L+ N L+ ++P DL +L ++ L GN++S +P L
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF---LHGNRIS-SVPERAFRGLH 177
Query: 198 SLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQ 256
SL L L N++ P + L ++ + L +N+L +LP+ L+ L+ L L+ N
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNP 236
Query: 257 L 257
Sbjct: 237 W 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 10/149 (6%)
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRN 255
+ + + L N+++ +S + + ++ L SN L + + L +L LDLS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90
Query: 256 QLSGDIS--TIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPK-S 311
+ T L L TL L Q + + L +L+ L L N L +P +
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148
Query: 312 LETLSHLKQFNASHNRLEGKILVKGSFKN 340
L +L NR+ + + +F+
Sbjct: 149 FRDLGNLTHLFLHGNRIS--SVPERAFRG 175
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 95.2 bits (236), Expect = 7e-21
Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 16/243 (6%)
Query: 69 LSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLT 128
+ +L + + + S A N +K ++ Q I L +T
Sbjct: 14 IFPDDAFAETIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIK-SV-QGIQYLPNVT 68
Query: 129 LLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGH 188
L L N L I P + LK L L L N ++ + L LK + + L N +S
Sbjct: 69 KLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-D 123
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLR 248
I L L L L+LG+NK+T + L L + ++L N ++D + L L+
Sbjct: 124 ING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQ 178
Query: 249 VLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308
L LS+N +S D+ + L +L+ L L S + +L+ ++ + +L
Sbjct: 179 NLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 237
Query: 309 PKS 311
S
Sbjct: 238 IIS 240
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 8/83 (9%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
+ + I A + +L + ++ L S++ + + +++
Sbjct: 1 MGETITVSTPIK-QIFPDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK- 56
Query: 307 KIPKSLETLSHLKQFNASHNRLE 329
+ + ++ L ++ + + N+L
Sbjct: 57 SV-QGIQYLPNVTKLFLNGNKLT 78
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 1e-20
Identities = 49/303 (16%), Positives = 87/303 (28%), Gaps = 43/303 (14%)
Query: 40 FGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99
+G R L LL + D + LK L++ + + +
Sbjct: 39 YGGGRSLEYLLKRVDTEADLGQFTD-------IIKSLSLKRLTVRAARIPSRILFGALRV 91
Query: 100 SA--SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT-MGRLKQLRGLSL 156
Q N ++ G P + G L L +++ + L+Q L
Sbjct: 92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151
Query: 157 KYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSI--- 213
K ++ + +L L L N
Sbjct: 152 KVLSIAQ-------------------AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192
Query: 214 ----PSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGA--L 267
P +L+ + + N + + + L+ LDLS N L
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252
Query: 268 VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNR 327
L +L+L+ + +P+ + + L LDLS N L P E L + + N
Sbjct: 253 SQLNSLNLSFTGLKQ-VPKGLPA--KLSVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNP 307
Query: 328 LEG 330
Sbjct: 308 FLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 2e-20
Identities = 49/262 (18%), Positives = 78/262 (29%), Gaps = 17/262 (6%)
Query: 35 HIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94
+ + SL L + + + L+ L+L + + G PP
Sbjct: 54 TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113
Query: 95 VIGNFS-ASFQNFYAFNCKLKG--NIPQEIGNL--RGLTLLSLFNNDLNGTISPTMGRLK 149
+ + N E+ GL +LS+ +
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173
Query: 150 QLRGLSLKYNNLEGSI-------PYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLREL 202
L L L N G P L+++ SG A+ L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
Query: 203 HLGSNKLTSSIPSSLWS-LEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261
L N L + + + +NLS L +P + L VLDLS N+L
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDR-N 289
Query: 262 STIGALVDLETLSLASNQFQGP 283
+ L + LSL N F
Sbjct: 290 PSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 14/145 (9%)
Query: 24 VMDLSSNSFSGHIPNT----FGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLK 79
+DLS N G L L L + T S + + L+
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV-----CSALAAARVQLQ 231
Query: 80 ALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG 139
L L N L ++ + + LK +P+ + L++L L N L+
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLDR 288
Query: 140 TISPTMGRLKQLRGLSLKYNNLEGS 164
P+ L Q+ LSLK N S
Sbjct: 289 N--PSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 20/164 (12%), Positives = 50/164 (30%), Gaps = 24/164 (14%)
Query: 174 LMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSS---LWSLEYILMINLSS 230
L Y ++ + + SL+ L + + ++ S I + + + + L +
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 231 NSLNDSLPSNI--QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESV 288
+ + P + T L +L+L + + + L
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW------------------ 146
Query: 289 GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
L+ L ++ + + + L + S N G+
Sbjct: 147 -LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 1e-20
Identities = 59/336 (17%), Positives = 109/336 (32%), Gaps = 18/336 (5%)
Query: 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHL 78
+ ++ L P + S L + + + D A ++
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTES-LHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRG---LTLLSLFNN 135
K + + + + N N + N I L + S+ N
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 136 DLNG-----TISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIP 190
L G + LK L + + Y M T +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317
Query: 191 PCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN--DSLPSNIQTLKVLR 248
C + ++ L +N LT ++ + L + + L N L + +K L+
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377
Query: 249 VLDLSRNQLSGDISTIG--ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
LD+S+N +S D L +L+++SN I + ++ LDL N +
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK- 434
Query: 307 KIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
IPK + L L++ N + N+L K + G F +
Sbjct: 435 SIPKQVVKLEALQELNVASNQL--KSVPDGIFDRLT 468
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 1e-19
Identities = 53/315 (16%), Positives = 108/315 (34%), Gaps = 13/315 (4%)
Query: 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLK 79
I + + + T NL + + +N + + + L
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228
Query: 80 ALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG-----NLRGLTLLSLFN 134
+ N IL V + + F N KL+G + +L+ L++ + +
Sbjct: 229 NIETTWNSFIRILQLV---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285
Query: 135 NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA 194
+ S + + + + + + N L+ +
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345
Query: 195 SLTSLRELHLGSNKLTS--SIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLD 251
LT L L L N+L I ++ + +++S NS++ K L L+
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405
Query: 252 LSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS 311
+S N L+ D ++ L L SN+ + IP+ V L +L+ L+++ N L
Sbjct: 406 MSSNILT-DTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGI 463
Query: 312 LETLSHLKQFNASHN 326
+ L+ L++ N
Sbjct: 464 FDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 6e-18
Identities = 52/299 (17%), Positives = 104/299 (34%), Gaps = 37/299 (12%)
Query: 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKAL 81
+ + N + L+++ TWN+ + L +
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR----------ILQLVWHTTVWYF 252
Query: 82 SLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGN-------------LRGLT 128
S+ + L G L F++F LK ++ + +
Sbjct: 253 SISNVKLQGQLD---------FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303
Query: 129 LLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLS-- 186
+ + + ++ L N L ++ + HL + + L N+L
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363
Query: 187 GHIPPCLASLTSLRELHLGSNKLTSSIPSSLWS-LEYILMINLSSNSLNDSLPSNIQTLK 245
I + SL++L + N ++ S + +L +N+SSN L D++ +
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR- 422
Query: 246 VLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNL 304
++VLDL N++ + L L+ L++ASNQ + L SL+ + L N
Sbjct: 423 -IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 3e-16
Identities = 57/341 (16%), Positives = 106/341 (31%), Gaps = 39/341 (11%)
Query: 26 DLSSNSF-SGHIPNTFGNLRHLSSLLLTWNNLTTES--------------SLADQWSFLS 70
DLS N+F + I FGN+ L L L+ +L S L + +
Sbjct: 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155
Query: 71 ALTNCRHLKALSLGSNPLGGILPPVIGNFSAS----------FQNFYAFNCKLKGNIPQE 120
+ SL I + S C +I +
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215
Query: 121 IGNLRGLTLLSLFNNDLNGTISPTMGRLKQ--------LRGLSLKYNNLEGSIPYDLCHL 172
+ L+ L+L N + + +L + + L+ Y L
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275
Query: 173 KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNS 232
K + ++ + +++ + + + L ++ S+N
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335
Query: 233 LNDSLPSNIQTLKVLRVLDLSRNQLS---GDISTIGALVDLETLSLASNQFQGPIPESV- 288
L D++ N L L L L NQL + L+ L ++ N +
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 289 GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
SL SL++S N L+ I + L +K + N+++
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 4e-13
Identities = 53/294 (18%), Positives = 99/294 (33%), Gaps = 12/294 (4%)
Query: 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247
H+P L+ L++ N ++ S + SL + ++ +S N + S + + L
Sbjct: 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71
Query: 248 RVLDLSRNQLSGDISTIGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSG 306
LDLS N+L + V+L+ L L+ N F PI + G++ L+ L LS +L
Sbjct: 72 EYLDLSHNKLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129
Query: 307 KIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQG 366
+ L+ K G+ ++F+ ES + F + +
Sbjct: 130 SSVLPIAHLNISKVLL-VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188
Query: 367 DSKSTKNVALIVLKYILPPIVSSVLIVIIIIMYIRC---RKRSTKKSDHEDFLPLATWRR 423
+ + VL+ S+L + + T + L L
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248
Query: 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSF 477
Y I + S S+ +I + +F + F
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS---DVFGFPQSYIYEIF 299
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 53/338 (15%), Positives = 103/338 (30%), Gaps = 61/338 (18%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
++S N S + +L L L+++ N + S + L+ L L
Sbjct: 27 NISQNYISELWTSDILSLSKLRILIISHNRIQYLDI--------SVFKFNQELEYLDLSH 78
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG-TISPT 144
N L I S L L L N + I
Sbjct: 79 NKLVKI----------SCHP------------------TVNLKHLDLSFNAFDALPICKE 110
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
G + QL+ L L +LE S + HL + + + G P L L
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESL 168
Query: 205 GSNKLTSSIPSSL-----WSLEYILMINLSSNSLND------SLPSNIQTLKVLRVLDLS 253
T+ + ++ + + N+ ++ S+ + +QT L L L+
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228
Query: 254 RNQLSG----DISTIGALVDLETLSLASNQFQGPIPESVG-----SLISLESLDLSGNNL 304
+ + I + + S+++ + QG + SL +L + +
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288
Query: 305 SGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
E S++ N + + +++ S
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCPSKIS 324
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 19/214 (8%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+ S+ F + +++ T + L L +
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS--------KISPFLHLDFSN 333
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG---NLRGLTLLSLFNNDLNGTIS 142
N L + G+ + + +LK + + ++ L L + N ++
Sbjct: 334 NLLTDTVFENCGHLT-ELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
Query: 143 PTM-GRLKQLRGLSLKYNNLEGSIPYDLCH-LKLMYGIRLTGNKLSGHIPPCLASLTSLR 200
K L L++ N L +I L +K++ L NK+ IP + L +L+
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLD---LHSNKIK-SIPKQVVKLEALQ 447
Query: 201 ELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234
EL++ SN+L S L + I L +N +
Sbjct: 448 ELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 8e-09
Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 13/206 (6%)
Query: 127 LTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC-HLKLMYGIRLTGNKL 185
T+L++ N ++ + + L +LR L + +N ++ + + + + + L+ NKL
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81
Query: 186 SGHIPPCLASLTSLRELHLGSNKLTS----SIPSSLWSLEYILMINLSSNSLNDSLPSNI 241
I +L+ L L N + ++ L++ + LS+ L S I
Sbjct: 82 V-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF---LGLSTTHLEKSSVLPI 135
Query: 242 QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 301
L + +VL + L D T SL + + +L
Sbjct: 136 AHLNISKVLLVLGETYGEKED-PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 302 NNLSGKIPKSLETLSHLKQFNASHNR 327
+N+ + + + N
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNP 220
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 89.8 bits (222), Expect = 3e-19
Identities = 48/208 (23%), Positives = 75/208 (36%), Gaps = 11/208 (5%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
+ E+ + + L L N TI M L L D +
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423
Query: 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236
+R +K +R LHL LT L L + ++LS N L +
Sbjct: 424 DLR---SKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-A 477
Query: 237 LPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQG-PIPESVGSLISLE 295
LP + L+ L VL S N L ++ + L L+ L L +N+ Q + + S L
Sbjct: 478 LPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536
Query: 296 SLDLSGNNLSGK---IPKSLETLSHLKQ 320
L+L GN+L + + E L +
Sbjct: 537 LLNLQGNSLCQEEGIQERLAEMLPSVSS 564
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 6e-09
Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 12/175 (6%)
Query: 158 YNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSL 217
+ D + ++ L+ K + + L S L+EL + +I +
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM 392
Query: 218 WSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQ---LSGDISTIGALVDLETLS 274
+L+ +L + + ++ + +R L + L + D+ L
Sbjct: 393 RALDPLLYEKETLQYFS-----TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH 447
Query: 275 LASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
LA + + L+ + LDLS N L +P +L L L+ AS N LE
Sbjct: 448 LAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 3e-06
Identities = 26/188 (13%), Positives = 54/188 (28%), Gaps = 29/188 (15%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
++ + + + T L ++ + ++ L L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
L + + + + +L+ +P + LR L +L +N L +
Sbjct: 449 AHKDLTVL--CHLEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG 503
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+ L +L+ L L N L+ ++ L S L L+
Sbjct: 504 -VANLPRLQELLLCNNRLQ-----QSAAIQ------------------PLVSCPRLVLLN 539
Query: 204 LGSNKLTS 211
L N L
Sbjct: 540 LQGNSLCQ 547
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-18
Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 21/254 (8%)
Query: 69 LSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLT 128
+ + +L + + + S A N +K ++ Q I L +T
Sbjct: 17 IFSDDAFAETIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIK-SV-QGIQYLPNVT 71
Query: 129 LLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGH 188
L L N L I P + LK L L L N ++ + L LK + + L N +S
Sbjct: 72 KLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-D 126
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLR 248
I L L L L+LG+NK+T + L L + ++L N ++D + L L+
Sbjct: 127 ING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQ 181
Query: 249 VLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308
L LS+N +S D+ + L +L+ L L S + +L+ ++ + +L
Sbjct: 182 NLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--- 237
Query: 309 PKSLETLSHLKQFN 322
+ E +S +
Sbjct: 238 --TPEIISDDGDYE 249
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 9e-15
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Query: 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPS 239
L ++ L S+ ++ ++ + S + L + + L+ N L D
Sbjct: 31 LKKKSVTD--AVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI--K 84
Query: 240 NIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 299
+ LK L L L N++ D+S++ L L++LSL N + L LESL L
Sbjct: 85 PLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYL 141
Query: 300 SGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
N ++ L L+ L + N++
Sbjct: 142 GNNKITD--ITVLSRLTKLDTLSLEDNQIS 169
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 4e-18
Identities = 60/328 (18%), Positives = 109/328 (33%), Gaps = 18/328 (5%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DL S G + + + L L ++ + S + ++K
Sbjct: 177 DLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIP-QEIGNLRGLTLLSLFNNDLNGTISPT 144
L L + + K ++ + R + L+++N + I
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295
Query: 145 MGR-----LKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199
LK L +K S M L+ + C S +S
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355
Query: 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPS---NIQTLKVLRVLDLSRNQ 256
L+ N T S+ +L+ + + L N L + + + L LD+S N
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNS 414
Query: 257 LSGDI--STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLET 314
L+ T + L+L+SN G + + ++ LDL N + IPK +
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTH 471
Query: 315 LSHLKQFNASHNRLEGKILVKGSFKNFS 342
L L++ N + N+L K + G F +
Sbjct: 472 LQALQELNVASNQL--KSVPDGVFDRLT 497
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 6e-13
Identities = 51/281 (18%), Positives = 89/281 (31%), Gaps = 55/281 (19%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
+++ + + + I + L ++ + L + + S + L
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE---MNIKMLS 337
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
+ I + S SF ++ Q L+ L L L N L
Sbjct: 338 ISDTPFIHMVCPPSPS-SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKV 395
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASL-TSLRELH 203
K + L +L N L+ H + S+ L+
Sbjct: 396 ALMTKNMSSLETLDVSL---------------------NSLNSHAYDRTCAWAESILVLN 434
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIST 263
L SN LT S+ LP ++VLDL N++
Sbjct: 435 LSSNMLTGSVF--------------------RCLPPK------VKVLDLHNNRIMSIPKD 468
Query: 264 IGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNN 303
+ L L+ L++ASNQ + +P+ V L SL+ + L N
Sbjct: 469 VTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 47/324 (14%), Positives = 88/324 (27%), Gaps = 31/324 (9%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLT----------TESSLAD-QWSFL--- 69
V+ LS N + F + L L ++ N L L+ + L
Sbjct: 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVC 139
Query: 70 SALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTL 129
N L L L + + + + S + +KG + + T+
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTV 198
Query: 130 LSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHI 189
L L + + + L L L L + L G L
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN---DENCQRLMTFLSELTRGPTLLNV- 254
Query: 190 PPCLASLTSLRELHLGSNKLTSSIPS-SLWSLEYILMINLSSNSLNDSLPSNIQ--TLKV 246
+L+ + +EY+ + NL+ D LK
Sbjct: 255 --------TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306
Query: 247 LRVLDLSRNQLSGDISTIG-ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L + + + ++ L+ + S S L+ + N +
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366
Query: 306 GKIPKSLETLSHLKQFNASHNRLE 329
+ + TL L+ N L+
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLK 390
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 8e-09
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 195 SLTSLRELHLGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLD 251
S + + LT +P +L +LS NS+++ +I L LRVL
Sbjct: 29 SNELESMVDYSNRNLTHVPKDLPPRTKAL------SLSQNSISELRMPDISFLSELRVLR 82
Query: 252 LSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNL-SGKIP 309
LS N++ D DLE L ++ N+ Q I + SL LDLS N+ +
Sbjct: 83 LSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-IS--CCPMASLRHLDLSFNDFDVLPVC 139
Query: 310 KSLETLSHLKQFNASHNRL 328
K L+ L S +
Sbjct: 140 KEFGNLTKLTFLGLSAAKF 158
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 9e-09
Identities = 36/213 (16%), Positives = 70/213 (32%), Gaps = 19/213 (8%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+ + + F + ++ +L+ ++ + L+
Sbjct: 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS--------PSSFTFLNF 360
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN----G 139
N + Q LK N + + ++ L + LN
Sbjct: 361 TQNVFTDSVFQGCSTLK-RLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSH 418
Query: 140 TISPTMGRLKQLRGLSLKYNNLEGSIPYDL-CHLKLMYGIRLTGNKLSGHIPPCLASLTS 198
T + + L+L N L GS+ L +K++ L N++ IP + L +
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD---LHNNRIM-SIPKDVTHLQA 474
Query: 199 LRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231
L+EL++ SN+L S L + I L N
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 52/320 (16%), Positives = 89/320 (27%), Gaps = 53/320 (16%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
LS NS S L L L L+ N + + + L+ L +
Sbjct: 58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--------HVFLFNQDLEYLDVSH 109
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG-TISPT 144
N L NI + L L L ND + +
Sbjct: 110 NRLQ--------------------------NIS--CCPMASLRHLDLSFNDFDVLPVCKE 141
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY-GIRLTGNKLSGHIPPCLASL-TSLREL 202
G L +L L L + HL L + L + G L T++ L
Sbjct: 142 FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201
Query: 203 HLGSNKLTSSIPS-SLWSLEYILMINLSSNSLN----DSLPSNIQTLKVLRVLDLSRNQL 257
N L S + S+ +L ++ + N+ N N + S + L + L +
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261
Query: 258 SG----DISTIGALVDLETLSLASNQFQGPIPESVG-----SLISLESLDLSGNNLSGKI 308
+ + +E L++ + I +L SL +
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321
Query: 309 PKSLETLSHLKQFNASHNRL 328
+ + S +
Sbjct: 322 EALYSVFAEMNIKMLSISDT 341
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 51/319 (15%), Positives = 95/319 (29%), Gaps = 52/319 (16%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
SN + ++ L L+ L N LT ++ L L+
Sbjct: 91 ACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLD-----------VSQNPLLTYLNCAR 136
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N L I + + + K + + LT L N + +
Sbjct: 137 NTLTEI---DVSHNT-QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT---ELDV 187
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
+ K L L+ NN+ + DL + + + NKL+ I + LT L
Sbjct: 188 SQNKLLNRLNCDTNNIT-KL--DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCS 241
Query: 206 SNKLTSSIPSSLWSLEYILMIN----------------LSSNSLNDSLPSNIQTLKVLRV 249
N LT S+L L + I + ++ L +
Sbjct: 242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYL 301
Query: 250 LDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 309
LD ++ ++ + L L L + + + V L+SL ++
Sbjct: 302 LDCQAAGIT-ELD-LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ-DFS 355
Query: 310 KSLETLSHLKQFNASHNRL 328
S+ + L + +
Sbjct: 356 -SVGKIPALNNNFEAEGQT 373
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 2e-17
Identities = 53/304 (17%), Positives = 99/304 (32%), Gaps = 41/304 (13%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
D ++S + + L L+ L+ T NN+TT L+ +L L+ S
Sbjct: 48 DCHNSSIT-DMTG-IEKLTGLTKLICTSNNITTLD-----------LSQNTNLTYLACDS 94
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N L + V KL + + LT L+ N L +
Sbjct: 95 NKLTNL--DVTPL--TKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT---EIDV 144
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
QL L N + D+ + + + NK++ + ++ L L+
Sbjct: 145 SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCD 199
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIG 265
+N +T + L + ++ SSN L + ++ L L D S N L+ ++ +
Sbjct: 200 TNNITKLDLNQNIQLTF---LDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD-VS 251
Query: 266 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325
L L TL + L G ++ + + L +
Sbjct: 252 TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQA 306
Query: 326 NRLE 329
+
Sbjct: 307 AGIT 310
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 4e-17
Identities = 51/227 (22%), Positives = 84/227 (37%), Gaps = 21/227 (9%)
Query: 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162
F + A +++ L LT L N+ + T + +L L L NN+
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT 77
Query: 163 GSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEY 222
DL + + NKL+ ++ + LT L L+ +NKLT S L Y
Sbjct: 78 T---LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131
Query: 223 ILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQG 282
+N + N+L + ++ L LD N+ + L TL + N+
Sbjct: 132 ---LNCARNTLTE---IDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKITE 184
Query: 283 PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
V L L+ NN++ K+ L L + S N+L
Sbjct: 185 ---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 49/285 (17%), Positives = 91/285 (31%), Gaps = 40/285 (14%)
Query: 27 LSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSN 86
L + L++L ++N +T ++ + L L+ +N
Sbjct: 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-----------VSQNKLLNRLNCDTN 201
Query: 87 PLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMG 146
+ + + + KL I + L LT N L +
Sbjct: 202 NITKL---DLNQNI-QLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVS 251
Query: 147 RLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGS 206
L +L L +L I DL H + + G + + + T L L +
Sbjct: 252 TLSKLTTLHCIQTDLL-EI--DLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQA 306
Query: 207 NKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGA 266
+T S L Y+ L++ L L + L+ L + D S++G
Sbjct: 307 AGITELDLSQNPKLVYL---YLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGK 359
Query: 267 LVDLETLSLASNQFQGPIPESVGSL------ISLESLDLSGNNLS 305
+ L A Q +P+ + +S + LD GN ++
Sbjct: 360 IPALNNNFEAEGQTIT-MPKETLTNNSLTIAVSPDLLDQFGNPMN 403
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 30/233 (12%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
D SSN + I L L+ + N LT ++ L L
Sbjct: 218 DCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELD-----------VSTLSKLTTLHCIQ 263
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
L I + + + Q Y + ++ + L LL + +
Sbjct: 264 TDLLEI------DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDL 314
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
+ +L L L L + D+ H + + + + + +L
Sbjct: 315 SQNPKLVYLYLNNTELT-EL--DVSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEA 369
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258
+ + +L + L I +S + L+ V D + N ++
Sbjct: 370 EGQTITMPKETLTNNS--LTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 405 RSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIK 464
S + +L R +D++ AT+ F+ L+G G FG VYKG + D VA+K
Sbjct: 10 NSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALK 69
Query: 465 IFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC 499
+ + F++E E L H +L+ ++ C
Sbjct: 70 RRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFC 104
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 4e-17
Identities = 42/199 (21%), Positives = 76/199 (38%), Gaps = 14/199 (7%)
Query: 121 IGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180
L +L + + L ++ + +N++ S+ + + + L
Sbjct: 15 DPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70
Query: 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSN 240
+ N++S + P L LT L EL + N+L + L + L +N L D +
Sbjct: 71 SHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRD--TDS 123
Query: 241 IQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 300
+ LK L +L + N+L I +G L LE L L N+ + L + +DL+
Sbjct: 124 LIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180
Query: 301 GNNLSGKIPKSLETLSHLK 319
G + K L
Sbjct: 181 GQKCVNEPVKYQPELYITN 199
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 193 LASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252
L + + +LG +T S L + N ++++ + +Q L+ L L
Sbjct: 15 DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHL 70
Query: 253 SRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSL 312
S NQ+S D+S + L LE LS+ N+ + + L L L N L SL
Sbjct: 71 SHNQIS-DLSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRD--TDSL 124
Query: 313 ETLSHLKQFNASHNRLE 329
L +L+ + +N+L+
Sbjct: 125 IHLKNLEILSIRNNKLK 141
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 9e-12
Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 16/190 (8%)
Query: 69 LSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLT 128
+ + +LG + ++ S QNF N ++ ++ + L
Sbjct: 12 VFPDPGLANAVKQNLGKQSVTDLVS--QKELS-GVQNFNGDNSNIQ-SL-AGMQFFTNLK 66
Query: 129 LLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGH 188
L L +N ++ +SP + L +L LS+ N L+ L ++ L N+L
Sbjct: 67 ELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELR-D 120
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLR 248
L L +L L + +NKL S L L + +++L N + + + LK +
Sbjct: 121 TDS-LIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVN 175
Query: 249 VLDLSRNQLS 258
+DL+ +
Sbjct: 176 WIDLTGQKCV 185
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 410 SDHEDFLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQ 469
++ + + L +R S ++Q A+D F+ N+LG G FG VYKG ++D T VA+K +
Sbjct: 6 AEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVK----R 61
Query: 470 LERAF-----RSFDSECEVLRNVCHRNLIKILSSCSNPD 503
L+ F +E E++ HRNL+++ C P
Sbjct: 62 LKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT 100
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 6e-16
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 20/172 (11%)
Query: 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTS-SIPSSLWSLEYILMINLSSNSLNDSL 237
L+ N L L T L +L+L +LT + +L L ++LS N L SL
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT---LDLSHNQLQ-SL 92
Query: 238 PSNIQTLKVLRVLDLSRNQLSGDISTIGA-----LVDLETLSLASNQFQGPIPESV-GSL 291
P QTL L VLD+S N+ ++++ L +L+ L L N+ + +P +
Sbjct: 93 PLLGQTLPALTVLDVSFNR----LTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPT 147
Query: 292 ISLESLDLSGNNLSGKIPKSL-ETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
LE L L+ NNL+ ++P L L +L N L + KG F +
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHL 196
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 11/197 (5%)
Query: 110 NCKLKG--NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPY 167
NC + +P ++ + T+L L N L T+ +L L+L L
Sbjct: 16 NCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73
Query: 168 DLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMIN 227
L ++ + L+ N+L +P +L +L L + N+LTS +L L + +
Sbjct: 74 G--TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 228 LSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIP 285
L N L +LP + L L L+ N L+ + L +L+TL L N IP
Sbjct: 131 LKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IP 188
Query: 286 ESVGSLISLESLDLSGN 302
+ L L GN
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 2e-12
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQ 256
LHL N L + ++L + +NL L L + TL VL LDLS NQ
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ 88
Query: 257 LSGDISTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPKSLETL 315
L L L L ++ N+ +P L L+ L L GN L P L
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 316 SHLKQFNASHNRL 328
L++ + ++N L
Sbjct: 148 PKLEKLSLANNNL 160
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 5e-12
Identities = 46/214 (21%), Positives = 68/214 (31%), Gaps = 49/214 (22%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
++ LS N T L+ L L LT L L L L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----------LQVDGTLPVLGTLDL 84
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N L ++P L LT+L + N L ++
Sbjct: 85 SHNQL--------------------------QSLPLLGQTLPALTVLDVSFNRLT-SLPL 117
Query: 144 TM-GRLKQLRGLSLKYNNLEGSIPYD----LCHLKLMYGIRLTGNKLSGHIPP-CLASLT 197
L +L+ L LK N L+ ++P L+ + L N L+ +P L L
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLS---LANNNLT-ELPAGLLNGLE 172
Query: 198 SLRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231
+L L L N L +IP + + L N
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 4e-15
Identities = 69/346 (19%), Positives = 107/346 (30%), Gaps = 68/346 (19%)
Query: 24 VMDLSSNSFS-GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALS 82
+D+ S L+ + L LT SAL L L+
Sbjct: 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD----ISSALRVNPALAELN 62
Query: 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT-- 140
L SN LG + Q +CK + LSL N L G
Sbjct: 63 LRSNELG---DVGVHCVLQGLQT---PSCK--------------IQKLSLQNCCLTGAGC 102
Query: 141 --ISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG-----IRLTGNKLS----GHI 189
+S T+ L L+ L L N L + LC L ++L LS +
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162
Query: 190 PPCLASLTSLRELHLGSNK--------LTSSIPSSLWSLEYILMINLSSNSLND----SL 237
L + +EL + +N L + S LE + L S + L
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA---LKLESCGVTSDNCRDL 219
Query: 238 PSNIQTLKVLRVLDLSRNQLSGD-ISTIGALVD-----LETLSLASNQFQGP----IPES 287
+ + LR L L N+L ++ + + L TL + +
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279
Query: 288 VGSLISLESLDLSGNNLSGKIPKSL-----ETLSHLKQFNASHNRL 328
+ + SL+ L L+GN L + + L E L+
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 60/322 (18%), Positives = 104/322 (32%), Gaps = 63/322 (19%)
Query: 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQ 104
+ L L LT S L L+ L L N LG +
Sbjct: 86 KIQKLSLQNCCLTGAGCGV----LSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLL 138
Query: 105 NFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT----ISPTMGRLKQLRGLSLKYNN 160
+ C+ L L L L+ ++ + + L++ N+
Sbjct: 139 D---PQCR--------------LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 161 LEGSIPYDLC------HLKLMYGIRLTGNKLS----GHIPPCLASLTSLRELHLGSNKLT 210
+ + LC +L ++L ++ + +AS SLREL LGSNKL
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEA-LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240
Query: 211 SS-----IPSSLWSLEYILMINLSSNSLND----SLPSNIQTLKVLRVLDLSRNQL--SG 259
P L + + + + L ++ + L+ L L+ N+L G
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300
Query: 260 DISTIGALVD----LETLSLASNQFQGPIPESVGSLI----SLESLDLSGNNLSGKIPKS 311
L++ LE+L + S F S++ L L +S N L +
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360
Query: 312 L-----ETLSHLKQFNASHNRL 328
L + S L+ + +
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDV 382
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 54/296 (18%), Positives = 90/296 (30%), Gaps = 62/296 (20%)
Query: 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQ 104
L L L + +L+ S S L K L++ +N + + +
Sbjct: 143 RLEKLQLEYCSLSAASCEP----LASVLRAKPDFKELTVSNNDIN---EAGVRVLCQGLK 195
Query: 105 NFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN----GTISPTMGRLKQLRGLSLKYNN 160
+ + L L L + + + + LR L+L N
Sbjct: 196 D-----------------SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238
Query: 161 LEGSIPYDLCHLKLMYGIRLTGNKLSG---------HIPPCLASLTSLRELHLGSNKLTS 211
L +LC L RL + + L + SL+EL L N+L
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298
Query: 212 S--------IPSSLWSLEYILMINLSSNSLND----SLPSNIQTLKVLRVLDLSRNQLSG 259
+ LE + + S S S + + L L +S N+L
Sbjct: 299 EGARLLCETLLEPGCQLES---LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355
Query: 260 D-ISTIGALVD-----LETLSLASNQFQ----GPIPESVGSLISLESLDLSGNNLS 305
+ + + L L LA + ++ + SL LDLS N L
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 53/302 (17%), Positives = 93/302 (30%), Gaps = 76/302 (25%)
Query: 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101
+ L +L L +T+++ + + L+ L+LGSN LG
Sbjct: 197 SPCQLEALKLESCGVTSDNCRD----LCGIVASKASLRELALGSNKLG----------DV 242
Query: 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN----GTISPTMGRLKQLRGLSLK 157
L L ++ + G + + + L+ LSL
Sbjct: 243 GMAELCPGLLH----------PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292
Query: 158 YNNLEGS--------IPYDLCHLKLMYGIRLTGNKLSG----HIPPCLASLTSLRELHLG 205
N L + C L+ + + + H LA L EL +
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLES---LWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349
Query: 206 SNKLTSS--------IPSSLWSLEYILMINLSSNSLND----SLPSNIQTLKVLRVLDLS 253
+N+L + + L + L+ ++D SL + + LR LDLS
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVL---WLADCDVSDSSCSSLAATLLANHSLRELDLS 406
Query: 254 RNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLE 313
N + G L +E++ LE L L S ++ L+
Sbjct: 407 NNC----LGDAGILQLVESVRQPGC--------------LLEQLVLYDIYWSEEMEDRLQ 448
Query: 314 TL 315
L
Sbjct: 449 AL 450
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 26/154 (16%), Positives = 58/154 (37%), Gaps = 24/154 (15%)
Query: 197 TSLRELHLGSNKLT-SSIPSSLWSLEYILMINLSSNSLND----SLPSNIQTLKVLRVLD 251
++ L + +L+ + L L+ ++ L L + + S ++ L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 252 LSRNQLSGDISTIGALVD--------LETLSLASNQFQ----GPIPESVGSLISLESLDL 299
L N+L + ++ ++ LSL + G + ++ +L +L+ L L
Sbjct: 63 LRSNELGD--VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120
Query: 300 SGNNLSGKIPKSL-----ETLSHLKQFNASHNRL 328
S N L + L + L++ + L
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 5e-15
Identities = 58/187 (31%), Positives = 80/187 (42%), Gaps = 23/187 (12%)
Query: 165 IPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTS---SIPSSLWSLE 221
IP D L L NKLS LT LR L+L NKL + I L +LE
Sbjct: 35 IPADTKKLDLQS------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 222 YILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGA---LVDLETLSLAS 277
+ ++ N L +LP + L L L L RNQL + L L LSL
Sbjct: 89 T---LWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPP-RVFDSLTKLTYLSLGY 142
Query: 278 NQFQGPIPESV-GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKG 336
N+ Q +P+ V L SL+ L L N L + + L+ LK +N+L K + +G
Sbjct: 143 NELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEG 199
Query: 337 SFKNFSA 343
+F +
Sbjct: 200 AFDSLEK 206
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-13
Identities = 59/183 (32%), Positives = 84/183 (45%), Gaps = 13/183 (7%)
Query: 127 LTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCH-LKLMYGIRLTGNKL 185
L L +N L+ S RL +LR L L N L+ ++P + LK + + +T NKL
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 186 SGHIPPCL-ASLTSLRELHLGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNI 241
+P + L +L EL L N+L S + SL L Y+ +L N L SLP +
Sbjct: 98 Q-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL---SLGYNEL-QSLPKGV 152
Query: 242 -QTLKVLRVLDLSRNQL-SGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 299
L L+ L L NQL L +L+TL L +NQ + + SL L+ L L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 300 SGN 302
N
Sbjct: 213 QEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 9e-13
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 17/182 (9%)
Query: 154 LSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCL-ASLTSLRELHLGSNKLTS- 211
L L+ N L L + + L NKL +P + L +L L + NKL +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 212 --SIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGA-- 266
+ L +L + L N L SLP + +L L L L N+L + G
Sbjct: 101 PIGVFDQLVNLAEL---RLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK-GVFD 154
Query: 267 -LVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324
L L+ L L +NQ + +PE L L++L L N L + ++L LK
Sbjct: 155 KLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 325 HN 326
N
Sbjct: 214 EN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 60/212 (28%), Positives = 78/212 (36%), Gaps = 45/212 (21%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DL SN S F L L L L N L T + L N L+ L +
Sbjct: 43 DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-----FKELKN---LETLWVTD 94
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N L LP G F L L L L N L ++ P +
Sbjct: 95 NKLQA-LPI--GVFD----------------------QLVNLAELRLDRNQLK-SLPPRV 128
Query: 146 -GRLKQLRGLSLKYNNLEGSIPYD----LCHLKLMYGIRLTGNKLSGHIPPCL-ASLTSL 199
L +L LSL YN L+ S+P L LK + L N+L +P LT L
Sbjct: 129 FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELR---LYNNQLK-RVPEGAFDKLTEL 183
Query: 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231
+ L L +N+L + SLE + M+ L N
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 6e-15
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 21/193 (10%)
Query: 123 NLRGLTLLSLFNNDLNGTISP-TMGRLKQLRGLSLKYNNL---EGSIPYDLCHLKLMYGI 178
+ L +L L ++ TI L L L L N + L L+ +
Sbjct: 50 SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV-- 106
Query: 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP----SSLWSLEYILMINLSSNSLN 234
L+ + L +L+EL++ N + S S+L +LE+ ++LSSN +
Sbjct: 107 -AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH---LDLSSNKIQ 162
Query: 235 DSLPSNI----QTLKVLRV-LDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVG 289
S+ + +L + LDLS N ++ + L+ L+L +NQ +
Sbjct: 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221
Query: 290 SLISLESLDLSGN 302
L SL+ + L N
Sbjct: 222 RLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 51/213 (23%), Positives = 79/213 (37%), Gaps = 19/213 (8%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
DLS N +F + L L L+ + T A + HL L L
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLSHLSTLILTG 85
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISPT 144
NP+ L + +S Q A L ++ G+L+ L L++ +N + P
Sbjct: 86 NPIQS-LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 145 M-GRLKQLRGLSLKYNNLEGSIPYD----LCHLK-LMYGIRLTGNKLSGHIPPCLASLTS 198
L L L L N ++ SI L + L + L+ N ++ I P
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201
Query: 199 LRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231
L+EL L +N+L S L + I L +N
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRN 255
S + L L N L S +S + +++LS + ++ Q+L L L L+ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86
Query: 256 QLSG-DISTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNL-SGKIPKSL 312
+ + L L+ L + G L +L+ L+++ N + S K+P+
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 313 ETLSHLKQFNASHNRLEGKILVKGSFKN 340
L++L+ + S N++ + + +
Sbjct: 146 SNLTNLEHLDLSSNKI--QSIYCTDLRV 171
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-14
Identities = 40/211 (18%), Positives = 72/211 (34%), Gaps = 11/211 (5%)
Query: 124 LRGLTLLSLFNNDLNGTISP-TMGRLKQLRGLSLKYNNLEGSIPYDL-CHLKLMYGIRLT 181
L L L TI L + + + + + +L + I +
Sbjct: 30 PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88
Query: 182 GNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIP--SSLWSLEYILMINLSSNSLNDSLP 238
+ +I P L L L+ L + + L P + ++S + ++ ++ N S+P
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIP 147
Query: 239 SNI-QTL-KVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESV--GSLISL 294
N Q L L L N + L+ + L N++ I + G
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207
Query: 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325
LD+S +++ K LE L L N
Sbjct: 208 SLLDVSQTSVTALPSKGLEHLKELIARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 9e-10
Identities = 40/260 (15%), Positives = 85/260 (32%), Gaps = 47/260 (18%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
++ IP+ + + L L +L T S A +N ++ + +
Sbjct: 17 RVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPS--------HAFSNLPNISRIYVSI 64
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP-T 144
+ L ++F NL +T + + N I P
Sbjct: 65 DVTLQQLES------------HSFY------------NLSKVTHIEIRNTRNLTYIDPDA 100
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYD--LCHLKLMYGIRLTGNKLSGHIPP-CLASLTS-LR 200
+ L L+ L + L+ P + + + + +T N IP L +
Sbjct: 101 LKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159
Query: 201 ELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI--QTLKVLRVLDLSRNQLS 258
L L +N TS + ++ + + L+ N + + +LD+S+ ++
Sbjct: 160 TLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
Query: 259 GDISTIGALVDLETLSLASN 278
+ + L L+ L +
Sbjct: 219 -ALPS-KGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 41/249 (16%), Positives = 77/249 (30%), Gaps = 50/249 (20%)
Query: 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLS--AL 72
PS+P + L + F NL ++S + ++ + L +
Sbjct: 27 PSLPPST-QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV---------TLQQLESHSF 76
Query: 73 TNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSL 132
N + + + + + P L L L +
Sbjct: 77 YNLSKVTHIEIRNTRNLTYIDP--DALK----------------------ELPLLKFLGI 112
Query: 133 FNNDLNGTISPT--MGRLKQLRGLSLKYNNLEGSIPYD-LCHL-KLMYGIRLTGNKLSGH 188
FN L + L + N SIP + L ++L N +
Sbjct: 113 FNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S 170
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIP----SSLWSLEYILMINLSSNSLNDSLPSNI-QT 243
+ + T L ++L NK + I ++S +L ++S S+ +LPS +
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL--DVSQTSVT-ALPSKGLEH 227
Query: 244 LKVLRVLDL 252
LK L +
Sbjct: 228 LKELIARNT 236
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 3e-13
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 13/161 (8%)
Query: 154 LSLKYNNLEGSIP--YDLCHLKLMYGIRLTGNKLSGHIPPC-LASLTSLRELHLGSNKLT 210
L L +NNL + + L ++ + L+ N L+ I + +LR L L SN L
Sbjct: 44 LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101
Query: 211 SSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLS----GDISTIG 265
+ L+ + ++ L +N + + N + + L+ L LS+NQ+S I
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 266 ALVDLETLSLASNQFQGPIPESVGSLISL--ESLDLSGNNL 304
L L L L+SN+ + + L + L L N L
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 4e-13
Identities = 42/168 (25%), Positives = 62/168 (36%), Gaps = 25/168 (14%)
Query: 165 IPYDLCHLKLMYGIRLTGNKLSGHIPP--CLASLTSLRELHLGSNKLTSSIPSSLWSLEY 222
+P L L+ N LS + LT+L L L N L + +
Sbjct: 37 LPSYTALL------DLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 223 ILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGA-----LVDLETLSLA 276
+ ++LSSN L+ +L + L+ L VL L N I + + L+ L L+
Sbjct: 90 LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNH----IVVVDRNAFEDMAQLQKLYLS 144
Query: 277 SNQFQGPIPESV----GSLISLESLDLSGNNLSGKIPKSLETLSHLKQ 320
NQ P + L L LDLS N L L+ L +
Sbjct: 145 QNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 57/270 (21%), Positives = 91/270 (33%), Gaps = 50/270 (18%)
Query: 15 PSIPHQIYWVMDLSSNSFSGHIPNT-FGNLRHLSSLLLTWNNLTTESSLADQWSFLSALT 73
S+P ++DLS N+ S L +L SLLL+ N+L SS A
Sbjct: 35 QSLPSYT-ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--------EAFV 85
Query: 74 NCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLF 133
+L+ L L SN L L F +L+ L +L L+
Sbjct: 86 PVPNLRYLDLSSNHL-HTLDE------FLFS------------------DLQALEVLLLY 120
Query: 134 NNDLNGTISP-TMGRLKQLRGLSLKYNNLEGSIP----YDLCHLKLMYGIRLTGNKLSGH 188
NN + + + QL+ L L N + P D L + + L+ NKL
Sbjct: 121 NNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 189 IPPCLASLTSLRE--LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND-----SLPSNI 241
L L + + L+L +N L + LSS +
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLECD-CKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKL 237
Query: 242 QTLKVLRVLDLSRNQLSGDISTIGALVDLE 271
+ L + S + S + +G + +
Sbjct: 238 HNIFSLDFFNCSEYKESAWEAHLGDTLTIR 267
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 425 SYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVL 484
++ + + G FG V+K + + VA+KIF +Q +++++ + E L
Sbjct: 15 GTENLYFQSMPLQLLEVKARGRFGCVWKAQLLN-EYVAVKIFPIQDKQSWQ-NEYEVYSL 72
Query: 485 RNVCHRNLIKILSSCSNPD 503
+ H N+++ + +
Sbjct: 73 PGMKHENILQFIGAEKRGT 91
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDW--TNVAIKIFNLQL--ERAFRSFDSECEVLRNVCH 489
+ N L G ++KG W ++ +K+ ++ R R F+ EC LR H
Sbjct: 10 KQLNFLTKLNENHSGELWKGR---WQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSH 66
Query: 490 RNLIKILSSCSNPDFKALM 508
N++ +L +C +P
Sbjct: 67 PNVLPVLGACQSPPAPHPT 85
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 425 SYLDIQRATDEFNE------CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERA----F 474
S+ +++ T+ F+E N +G G FG VYKG +++ T VA+K ++
Sbjct: 16 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELK 74
Query: 475 RSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507
+ FD E +V+ H NL+++L S+ D L
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCL 107
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-11
Identities = 49/170 (28%), Positives = 67/170 (39%), Gaps = 26/170 (15%)
Query: 165 IPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTS---SIPSSLWSLE 221
IP D L L L+ LT L L+L N+L + + L L
Sbjct: 33 IPADTEKLDLQS------TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 222 YILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGA---LVDLETLSLAS 277
+ L++N L SLP + L L L L NQL + + G L L+ L L +
Sbjct: 87 T---LGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPS-GVFDRLTKLKELRLNT 140
Query: 278 NQFQGPIPESV-GSLISLESLDLSGNNLSGKIPK----SLETLSHLKQFN 322
NQ Q IP L +L++L LS N L +P L L + F
Sbjct: 141 NQLQS-IPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFG 188
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-09
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 15/157 (9%)
Query: 154 LSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTS- 211
L L+ L L + + L N+L + LT L L L +N+L S
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASL 98
Query: 212 --SIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGA-- 266
+ L L+ + L N L SLPS + L L+ L L+ NQL I GA
Sbjct: 99 PLGVFDHLTQLDKL---YLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIPA-GAFD 152
Query: 267 -LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
L +L+TLSL++NQ Q + L L+++ L GN
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-11
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 9/159 (5%)
Query: 184 KLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQT 243
+ ELH + + ++L +L+ + LS+N++ S++
Sbjct: 13 IFEERKSVVATEAEKV-ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI--SSLSG 68
Query: 244 LKVLRVLDLSRNQLSGDISTIGALVD-LETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
++ LR+L L RN + I + A+ D LE L ++ NQ + L++L L +S N
Sbjct: 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNN 125
Query: 303 NLSG-KIPKSLETLSHLKQFNASHNRLEGKILVKGSFKN 340
++ L L L+ + N L +
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 44/195 (22%), Positives = 69/195 (35%), Gaps = 65/195 (33%)
Query: 116 NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLM 175
+ + L+ L+L N++ IS + ++ LR LSL N ++
Sbjct: 39 KMDATLSTLKACKHLALSTNNI-EKISS-LSGMENLRILSLGRNLIK------------- 83
Query: 176 YGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND 235
I A +L EL + N++ S
Sbjct: 84 ------------KIENLDAVADTLEELWISYNQIAS------------------------ 107
Query: 236 SLPSNIQTLKVLRVLDLSRNQLS--GDISTIGALVDLETLSLASNQFQGPIPES------ 287
S I+ L LRVL +S N+++ G+I + AL LE L LA N E+
Sbjct: 108 --LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165
Query: 288 ----VGSLISLESLD 298
V L +L+ LD
Sbjct: 166 RIEVVKRLPNLKKLD 180
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-11
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 178 IRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236
IRL N + IPP + LR + L +N+++ P + L + + L N +
Sbjct: 37 IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-E 94
Query: 237 LPSNI-QTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISL 294
LP ++ + L L++L L+ N+++ + L +L LSL N+ Q + L ++
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 295 ESLDLSGN 302
+++ L+ N
Sbjct: 155 QTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-10
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 10/129 (7%)
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRN 255
++ E+ L N + P + + + I+LS+N + L + Q L+ L L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGN 90
Query: 256 QLSG-DISTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPK--- 310
+++ S L L+ L L +N+ + L +L L L N L I K
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148
Query: 311 -SLETLSHL 318
L + +
Sbjct: 149 SPLRAIQTM 157
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 9e-09
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 45/173 (26%)
Query: 116 NIPQEIGNLRGLTLLSLFNNDLNGTISPTM-GRLKQLRGLSLKYNNLEGSIP----YDLC 170
N+P+ I T + L N + I P K+LR + L N + + L
Sbjct: 29 NLPETI------TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR 80
Query: 171 HLKLMYGIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLS 229
L + L GNK++ +P L SL+ L L +NK+
Sbjct: 81 SLNSLV---LYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN------------------- 117
Query: 230 SNSLNDSLPSNI-QTLKVLRVLDLSRNQL-SGDISTIGALVDLETLSLASNQF 280
L + Q L L +L L N+L + T L ++T+ LA N F
Sbjct: 118 ------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 26/149 (17%)
Query: 206 SNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDI 261
LT ++P ++ + L N++ +P K LR +DLS NQ+S
Sbjct: 20 GKGLTEIPTNLPETITEI------RLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS--- 69
Query: 262 STIGA-----LVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPK-SLET 314
+ L L +L L N+ +P+S+ L SL+ L L+ N ++ + + +
Sbjct: 70 -ELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQD 126
Query: 315 LSHLKQFNASHNRLEGKILVKGSFKNFSA 343
L +L + N+L + + KG+F A
Sbjct: 127 LHNLNLLSLYDNKL--QTIAKGTFSPLRA 153
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 34/159 (21%), Positives = 50/159 (31%), Gaps = 35/159 (22%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
L N+ P F + L + L+ N ++ + A L + L +L L
Sbjct: 38 RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-----FQGLRS---LNSLVLYG 89
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N + LP F L L LL L N +N
Sbjct: 90 NKITE-LPK--SLFE----------------------GLFSLQLLLLNANKINCLRVDAF 124
Query: 146 GRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYGIRLTGN 183
L L LSL N L+ +I L+ + + L N
Sbjct: 125 QDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 6e-11
Identities = 49/345 (14%), Positives = 91/345 (26%), Gaps = 93/345 (26%)
Query: 26 DLSSNSFSG----HIPNTFGNLRHLSSLLLTWNNLTTESSLADQ--WSFLSALTNCRHLK 79
LS N+ + + + L + + L AL C L
Sbjct: 38 VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97
Query: 80 ALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDL-- 137
+ L N G + +F L + L L L NN L
Sbjct: 98 TVRLSDNAFGPTAQEPLIDF-------------LSKH--------TPLEHLYLHNNGLGP 136
Query: 138 -----------NGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLS 186
++ LR + N L N
Sbjct: 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL--------------------ENGSM 176
Query: 187 GHIPPCLASLTSLRELHLGSNKLTSS-----IPSSLWSLEYILMINLSSNSLND----SL 237
S L + + N + + L + + +++L N+ +L
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236
Query: 238 PSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESL 297
+++ LR L L+ +S GA ++ S N L++L
Sbjct: 237 AIALKSWPNLRELGLNDCL----LSARGAAAVVDAFSKLENI-------------GLQTL 279
Query: 298 DLSGNNLSGK----IPKSLET-LSHLKQFNASHNRL--EGKILVK 335
L N + + ++ + L + NR E ++ +
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 324
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 45/305 (14%), Positives = 87/305 (28%), Gaps = 76/305 (24%)
Query: 46 LSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQN 105
+ L + +TTE + + L +K + L N +G +
Sbjct: 6 IEGKSLKLDAITTEDEKS----VFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN------ 55
Query: 106 FYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRL-------KQLRGLSLKY 158
+ +L +F + I + L +L + L
Sbjct: 56 -------IASKK-----DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103
Query: 159 NNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLW 218
N G + L+ T L L+L +N L
Sbjct: 104 NAF--------------------GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ------ 137
Query: 219 SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIG---ALVD---LET 272
+ I L ++N + LR + RN+L + S L T
Sbjct: 138 AGAKIARA-LQELAVNKKAKNA----PPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLHT 191
Query: 273 LSLASNQF-----QGPIPESVGSLISLESLDLSGNNLSGK----IPKSLETLSHLKQFNA 323
+ + N + + E + L+ LDL N + + +L++ +L++
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251
Query: 324 SHNRL 328
+ L
Sbjct: 252 NDCLL 256
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 8e-11
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEV 483
+ + D L+G G +G+VYKG++ + VA+K+F+ ++F +E +
Sbjct: 3 AAASEPSLDLDNLKLLELIGRGRYGAVYKGSLDE-RPVAVKVFSFANR---QNFINEKNI 58
Query: 484 --LRNVCHRNLIKILSSCSNPD 503
+ + H N+ + +
Sbjct: 59 YRVPLMEHDNIARFIVGDERVT 80
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-11
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDW--TNVAIKIFNLQ--LERAFRSFDSECEVLRNVCH 489
+ N +G GSFG+V++ W ++VA+KI Q F E +++ + H
Sbjct: 37 CDLNIKEKIGAGSFGTVHRAE---WHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRH 93
Query: 490 RNLIKILSSCSNP 502
N++ + + + P
Sbjct: 94 PNIVLFMGAVTQP 106
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 47/307 (15%), Positives = 93/307 (30%), Gaps = 69/307 (22%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
+ + IP+ R+ L L A + L+ + +
Sbjct: 15 LCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQK--------GAFSGFGDLEKIEISQ 63
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N + ++ F+ NL L + + + I+P
Sbjct: 64 NDVLEVIEA------------DVFS------------NLPKLHEIRIEKANNLLYINPEA 99
Query: 146 -GRLKQLRGLSLKYNNLEGSIP-YDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTS-LRE 201
L L+ L + ++ +P H + + N I L+
Sbjct: 100 FQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158
Query: 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGD 260
L L N + S+ + + +N+L + LP+++ +LD+SR ++
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIH-- 215
Query: 261 ISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQ 320
SL S + L L + NL K+P +LE L L +
Sbjct: 216 -------------SLPSYGLEN--------LKKLRARST--YNLK-KLP-TLEKLVALME 250
Query: 321 FNASHNR 327
+ ++
Sbjct: 251 ASLTYPS 257
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDW--TNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN 491
E ++G G+FG V K W +VAIK + ER ++F E L V H N
Sbjct: 8 KEIEVEEVVGRGAFGVVCKAK---WRAKDVAIKQIESESER--KAFIVELRQLSRVNHPN 62
Query: 492 LIKILSSCSNP 502
++K+ +C NP
Sbjct: 63 IVKLYGACLNP 73
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQ-------LERAFRSFDSECEVLR 485
+E +G G FG V+KG + D + VAIK L + F+ F E ++
Sbjct: 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78
Query: 486 NVCHRNLIKILSSCSNP 502
N+ H N++K+ NP
Sbjct: 79 NLNHPNIVKLYGLMHNP 95
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQL--ERAFRSFDSECEVLRNVCHR 490
+ +G+GSFG+VYKG W VA+K+ N+ + ++F +E VLR H
Sbjct: 24 GQITVGQRIGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHV 80
Query: 491 NLIKILSSCSNPDF 504
N++ + + P
Sbjct: 81 NILLFMGYSTAPQL 94
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 32/210 (15%)
Query: 128 TLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187
+L + T + T L + + ++++ +L + + L GNKL
Sbjct: 22 IKANLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLHD 77
Query: 188 HIPPCLASLTSLRELHLGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNI-QT 243
L LT+L L L N+L S + L +L+ + L N L SLP +
Sbjct: 78 --ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL---VLVENQLQ-SLPDGVFDK 131
Query: 244 LKVLRVLDLSRNQLSG------DISTIGALVDLETLSLASNQFQGPIPESV-GSLISLES 296
L L L+L+ NQL D L +L L L+ NQ Q +PE V L L+
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFD-----KLTNLTELDLSYNQLQS-LPEGVFDKLTQLKD 185
Query: 297 LDLSGNNLSGKIPK----SLETLSHLKQFN 322
L L N L +P L +L ++ +
Sbjct: 186 LRLYQNQLKS-VPDGVFDRLTSLQYIWLHD 214
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQ 256
+ +L +T ++ + L I I +++ + S+ IQ L +R L L N+
Sbjct: 19 AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNK 74
Query: 257 LSGDISTIGA---LVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPKSL 312
L I A L +L L L NQ Q +P V L +L+ L L N L
Sbjct: 75 LH----DISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 313 ETLSHLKQFNASHNRL 328
+ L++L N +HN+L
Sbjct: 130 DKLTNLTYLNLAHNQL 145
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 17/122 (13%)
Query: 211 SSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDL 270
+ NL S+ + + L + + + + + + I L ++
Sbjct: 15 DDAFAETIKA------NLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKS-VQGIQYLPNV 65
Query: 271 ETLSLASNQFQGPIPESVG---SLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNR 327
L+L N+ + L +L L L+GN L + L++LK+ N+
Sbjct: 66 RYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 328 LE 329
L+
Sbjct: 121 LQ 122
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDW--TNVAIKIFNLQ----LERAFRSFDSE 480
L+I E ++G G FG VY+ W VA+K + + + E
Sbjct: 2 LEIDF--AELTLEEIIGIGGFGKVYRAF---WIGDEVAVKAARHDPDEDISQTIENVRQE 56
Query: 481 CEVLRNVCHRNLIKILSSCSNP 502
++ + H N+I + C
Sbjct: 57 AKLFAMLKHPNIIALRGVCLKE 78
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQL--ERAFRSFDSECEVLRNVCHR 490
++ L+G G FG VY G W VAI++ +++ E ++F E R H
Sbjct: 33 EQLEIGELIGKGRFGQVYHGR---WHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHE 89
Query: 491 NLIKILSSCSNP 502
N++ + +C +P
Sbjct: 90 NVVLFMGACMSP 101
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-10
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 178 IRLTGNKLSGHIPP--CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND 235
+RL N+ + + L LR+++ +NK+T + + I L+SN L +
Sbjct: 37 LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL-E 94
Query: 236 SLPSNI-QTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLIS 293
++ + + L+ L+ L L N+++ + L + LSL NQ P + +L S
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 294 LESLDLSGN 302
L +L+L N
Sbjct: 155 LSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-09
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 197 TSLRELHLGSNKLTSSIPSSLWS-LEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSR 254
EL L +N+ T + ++ L + IN S+N + + + + + L+
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTS 90
Query: 255 NQLSG-DISTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPK-- 310
N+L L L+TL L SN+ + L S+ L L N ++ +
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148
Query: 311 --SLETLSHL 318
+L +LS L
Sbjct: 149 FDTLHSLSTL 158
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-08
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 123 NLRGLTLLSLFNNDLNGTISP-TMGRLKQLRGLSLKYNNLEGSIP----YDLCHLKLMYG 177
L L ++ NN + I + + L N LE ++ L LK +
Sbjct: 55 KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM- 111
Query: 178 IRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234
L N+++ + L+S+R L L N++T+ P + +L + +NL +N N
Sbjct: 112 --LRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 25/146 (17%)
Query: 206 SNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSN--IQTLKVLRVLDLSRNQLSGD 260
+ KL IP L L++N L + + L LR ++ S N+
Sbjct: 20 NQKLNKIPEHIPQYTAELR------LNNNEFT-VLEATGIFKKLPQLRKINFSNNK---- 68
Query: 261 ISTIGA-----LVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPKSLET 314
I+ I + + L SN+ + + + L SL++L L N ++ S
Sbjct: 69 ITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIG 127
Query: 315 LSHLKQFNASHNRLEGKILVKGSFKN 340
LS ++ + N++ + G+F
Sbjct: 128 LSSVRLLSLYDNQI--TTVAPGAFDT 151
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-09
Identities = 28/143 (19%), Positives = 45/143 (31%), Gaps = 33/143 (23%)
Query: 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP 238
+LT + + REL L K+ + NL +
Sbjct: 3 KLTAELIEQ--AAQYTNAVRDRELDLRGYKIPV-------------IENLGA-------- 39
Query: 239 SNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 298
TL +D S N++ + L L+TL + +N+ +L L L
Sbjct: 40 ----TLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94
Query: 299 LSGNNLSGKIPKSLETLSHLKQF 321
L+ N+L L L L
Sbjct: 95 LTNNSLV-----ELGDLDPLASL 112
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 225 MINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIG-ALVDLETLSLASNQFQGP 283
M+ L++ + + + R LDL ++ I +G L + + + N+
Sbjct: 1 MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE---- 53
Query: 284 IP--ESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
I + L L++L ++ N + + L L + ++N L
Sbjct: 54 IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 7e-09
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRN 255
T+ + L+L N++T P SL + + L SN L +LP + +L L VLDL N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98
Query: 256 QLSG------DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 309
QL+ D LV L+ L + N+ +P + L L L L N L IP
Sbjct: 99 QLTVLPSAVFD-----RLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIP 151
Query: 310 K----SLETLSHLKQFN 322
L +L+H F
Sbjct: 152 HGAFDRLSSLTHAYLFG 168
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-08
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 165 IPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTS---SIPSSLWSLE 221
IP + L L N+++ P SL +L+EL+LGSN+L + + SL L
Sbjct: 38 IPTNAQILYLHD------NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91
Query: 222 YILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQF 280
++L +N L LPS + L L+ L + N+L+ I L L L+L NQ
Sbjct: 92 V---LDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Query: 281 QGPIPESVGSLISLESLDLSGN 302
+ + L SL L GN
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 45/181 (24%), Positives = 61/181 (33%), Gaps = 46/181 (25%)
Query: 110 NCKLKG------NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG 163
+C+ K IP L L +N + L L+ L L N L
Sbjct: 25 DCRSKRHASVPAGIPTNAQILY------LHDNQITKLEPGVFDSLINLKELYLGSNQLG- 77
Query: 164 SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPS----SLWS 219
++P + SLT L L LG+N+LT +PS L
Sbjct: 78 ALPVGVFD-----------------------SLTQLTVLDLGTNQLT-VLPSAVFDRLVH 113
Query: 220 LEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL-SGDISTIGALVDLETLSLASN 278
L+ + + N L LP I+ L L L L +NQL S L L L N
Sbjct: 114 LKE---LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Query: 279 Q 279
Sbjct: 170 P 170
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 92 LPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQL 151
V + Q Y + ++ P +L L L L +N L L QL
Sbjct: 31 HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90
Query: 152 RGLSLKYNNLEGSIP---YD-LCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSN 207
L L N L +P +D L HLK ++ + NKL+ +P + LT L L L N
Sbjct: 91 TVLDLGTNQLT-VLPSAVFDRLVHLKELF---MCCNKLTE-LPRGIERLTHLTHLALDQN 145
Query: 208 KLTSSIPS----SLWSLEYILMIN 227
+L SIP L SL + +
Sbjct: 146 QLK-SIPHGAFDRLSSLTHAYLFG 168
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-08
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 226 INLSSNSLND-SLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPI 284
+ L ++ N+ L + L L L+ I+ + L L+ L L+ N+ G +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGL 80
Query: 285 PESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQF 321
+L L+LSGN + K L T+ LK+
Sbjct: 81 EVLAEKCPNLTHLNLSGNKI-----KDLSTIEPLKKL 112
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 195 SLTSLRELHLGSNKLTS-SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253
+ + ++EL L +++ + E + ++ + L +N+ L L+ L+LS
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72
Query: 254 RNQLSGDISTIG-ALVDLETLSLASNQFQGP-IPESVGSLISLESLDLSGN 302
N++SG + + +L L+L+ N+ + E + L +L+SLDL
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 178 IRLTGNKLS-GHIPPCLASLTSLRELHLGSNKLTS-SIPSSLWSLEYILMINLSSNSLND 235
+ L ++ + G + L L + LTS + L L+ + LS N ++
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKL---ELSDNRVSG 78
Query: 236 SLPSNIQTLKVLRVLDLSRNQLS--GDISTIGALVDLETLSLASN 278
L + L L+LS N++ I + L +L++L L +
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 233 LNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLI 292
L + PS+++ L VLD SR+ +LE LS + ++ L
Sbjct: 11 LRNRTPSDVKEL----VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLN 64
Query: 293 SLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L+ L+LS N +SG + E +L N S N+++
Sbjct: 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 147 RLKQLRGLSLKYN-NLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
++ L L + + EG + + + + L+ I L L L++L L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELS 72
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLND-SLPSNIQTLKVLRVLDLSRN 255
N+++ + + +NLS N + D S ++ L+ L+ LDL
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 435 EFNECNL-----LGTGSFGSVYKGTISDW-----TNVAIKIFNLQLERAFRSFDSECEVL 484
+F E +L LG G+FGSV VA+K E R F+ E E+L
Sbjct: 37 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 96
Query: 485 RNVCHRNLIKILSSCSNPDFKALM 508
+++ H N++K C + + L
Sbjct: 97 KSLQHDNIVKYKGVCYSAGRRNLK 120
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 435 EFNECNL-----LGTGSFGSVYKGTISDW-----TNVAIKIFNLQLERAFRSFDSECEVL 484
+F E +L LG G+FGSV VA+K E R F+ E E+L
Sbjct: 6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65
Query: 485 RNVCHRNLIKILSSCSNPDFKALM 508
+++ H N++K C + + L
Sbjct: 66 KSLQHDNIVKYKGVCYSAGRRNLK 89
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-08
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 219 SLEYILMINLSSNSLND-SLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLAS 277
+ + + L + ND + L L L L +S + L L+ L L+
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSE 80
Query: 278 NQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQF 321
N+ G + L +L L+LSGN L + TL LK+
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLK-----DISTLEPLKKL 119
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 225 MINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPI 284
M L + P+ ++ L VLD ++ V+LE LSL +
Sbjct: 10 MKRRIHLELRNRTPAAVREL----VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--S 63
Query: 285 PESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
++ L L+ L+LS N + G + E L +L N S N+L+
Sbjct: 64 VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 30/150 (20%)
Query: 113 LKGNIPQEIGNLR--GLTLLSLFNNDLN-GTISPTMGRLKQLRGLSLKYNNLEGSIPYDL 169
+K I E+ N + L L N N G I L LSL L
Sbjct: 10 MKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI------- 62
Query: 170 CHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLS 229
+S L L L++L L N++ + L + +NLS
Sbjct: 63 --------------SVSN-----LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103
Query: 230 SNSLND-SLPSNIQTLKVLRVLDLSRNQLS 258
N L D S ++ L+ L+ LDL +++
Sbjct: 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 9e-04
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 114 KGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLK 173
G I L LSL N L ++S + +L +L+ L L N + G + L
Sbjct: 38 DGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLP 95
Query: 174 LMYGIRLTGNKLS--GHIPPCLASLTSLRELHLGSNKLTS 211
+ + L+GNKL + P L L L+ L L + ++T+
Sbjct: 96 NLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVTN 134
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIFNLQLERAFRSFDSECEVLRNVCH 489
+ +LG G FG K T + +K E R+F E +V+R + H
Sbjct: 10 SDLIHGEVLGKGCFGQAIKVT---HRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEH 66
Query: 490 RNLIKILSSCSNP 502
N++K +
Sbjct: 67 PNVLKFIGVLYKD 79
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 6e-08
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 416 LPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDW--TNVAIKIFNLQLERA 473
LPL R T IQ +G G +G V+ G W VA+K+F
Sbjct: 27 LPLLVQR-TIAKQIQ-------MVKQIGKGRYGEVWMGK---WRGEKVAVKVFF---TTE 72
Query: 474 FRSFDSECEV--LRNVCHRNLIKILSSCSNPD 503
S+ E E+ + H N++ +++
Sbjct: 73 EASWFRETEIYQTVLMRHENILGFIAADIKGT 104
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 6e-08
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 230 SNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQGPIPES 287
+ ++ + L L + Q + + L +L L++ + + P++
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
L L+LS N L K+++ LS L++ S N L
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 4e-06
Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 25/123 (20%)
Query: 183 NKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQ 242
+ L +L EL++ + + + +++
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLE-----------------------LRDLR 53
Query: 243 TLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 301
L LR L + ++ L L L+L+ N + + +SL+ L LSG
Sbjct: 54 GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSG 112
Query: 302 NNL 304
N L
Sbjct: 113 NPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 5e-06
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 116 NIPQEIGNLRGLTLLSLFNNDLNGTISP-TMGRLKQLRGLSLKYNNLEGSIPYD-LCHLK 173
+ + LT L + N + + L +LR L++ + L + D
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 174 LMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLT 210
+ + L+ N L + SL+EL L N L
Sbjct: 81 RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-05
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 164 SIPYDLCHLKLMYGIRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWSLEY 222
+ L + + + + + H+ L L LR L + + L P +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 223 ILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257
+ +NLS N+L SL L+ L LS N L
Sbjct: 82 LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 250 LDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIP-ESVGSLISLESLDLSGNNLSGKI 308
L +R+ + + +L L + + Q + + L L +L + + L
Sbjct: 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72
Query: 309 PKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFF--GNYALC 353
P + L + N S N L + L + + S + GN C
Sbjct: 73 PDAFHFTPRLSRLNLSFNAL--ESLSWKTVQGLSLQELVLSGNPLHC 117
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 7e-08
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 442 LGTGSFGSVYKGTISD----WTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKI 495
LG G FGSV +G + VA+K L +R F SE +++ H N+I++
Sbjct: 42 LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRL 101
Query: 496 LSSCS 500
L C
Sbjct: 102 LGVCI 106
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 7e-08
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 440 NLLGTGSFGSVYKGTISDW--TNVAIKIFNLQLERAFRSFDSECEV--LRNVCHRNLIKI 495
+G G +G V++G+ W NVA+KIF+ + E +S+ E E+ + H N++
Sbjct: 14 ECVGKGRYGEVWRGS---WQGENVAVKIFSSRDE---KSWFRETELYNTVMLRHENILGF 67
Query: 496 LSSCSNPDFK 505
++S
Sbjct: 68 IASDMTSRHS 77
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 7e-08
Identities = 88/491 (17%), Positives = 147/491 (29%), Gaps = 176/491 (35%)
Query: 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTE-----SSLADQWSFLSAL 72
+I+W+ N ++L L + +S +D S +
Sbjct: 181 DFKIFWL--------------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 73 TNC-----RHLKALSLGSNPLGGIL-----PPVIGNFSASFQNFYAFNCKL------KGN 116
+ R L N L +L F+ +CK+ K
Sbjct: 227 IHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFN--------LSCKILLTTRFKQV 277
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE-GSIPYDLCHLKLM 175
T +SL + + T++P +++ L LKY + +P ++
Sbjct: 278 TDFLSAATT--THISL--DHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVL----- 323
Query: 176 YGIRLTGNKLSGHIPPCLASL--TSLRE--------LHLGSNKLTSSIPSSLWSLE---- 221
T N P S+ S+R+ H+ +KLT+ I SSL LE
Sbjct: 324 -----TTN-------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 222 ---YI-LMINLSSNSLNDSLPSNIQTLKVLRVL--DLSRNQLSGDISTIGALVDLETLSL 275
+ L + S ++I +L ++ D+ ++ D+ + + L SL
Sbjct: 372 RKMFDRLSV------FPPS--AHI-PTILLSLIWFDVIKS----DVMVV--VNKLHKYSL 416
Query: 276 ASNQFQGPIPESVGSLISLESLDLS----GNNLSG---------KIPKSL--ETLS---- 316
Q + S IS+ S+ L N IPK+ + L
Sbjct: 417 VEKQPK-------ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 317 ----------HLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQG 366
HLK +++ F +F F K R
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMV----FLDF---RFLEQ-------KIRHDSTAWN 515
Query: 367 DSKSTKNVALIVLKYILPPIVSSVLIVIIIIMYIR--CRKRSTKKSDHEDFLPLATWR-- 422
S S N L LK+ P YI K + DFLP
Sbjct: 516 ASGSILNT-LQQLKFYKP--------------YICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 423 RTSYLDI-QRA 432
+ Y D+ + A
Sbjct: 561 CSKYTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 47/428 (10%), Positives = 103/428 (24%), Gaps = 153/428 (35%)
Query: 140 TISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP-------- 191
P+M + YN+ + Y++ L+ +R L P
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLELRPAKNVLIDGV 158
Query: 192 ------CLASLTSLRE-------------LHLGSNKLTSSIPSSLWSLEYILMINLSSNS 232
+A L+L + ++ L L Y + N +S S
Sbjct: 159 LGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 233 LN-DSLPSNIQTLK--------------VLRVLDLSRNQ--------------LSGDIST 263
+ ++ I +++ L VL +N +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS---GKIPKSLETLS--HL 318
L T ++ + + E L L +P+ + T + L
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPD-------EVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 319 KQFNAS----HNRLEG---------KILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQ 365
S + +++ S + + + F
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FP------ 382
Query: 366 GDSKSTKNVALIVLKYILPPIVSSVLIVIIIIMYIRCRKRSTKKSDHEDFLPLATWRRTS 425
+ I + +L +I W
Sbjct: 383 ------PSA----------HIPTILLSLI--------------------------WFDVI 400
Query: 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLR 485
D+ ++ ++ +L+ I I ++ LE + E
Sbjct: 401 KSDVMVVVNKLHKYSLV------------EKQPKESTISIPSIYLE-----LKVKLENEY 443
Query: 486 NVCHRNLI 493
+ HR+++
Sbjct: 444 AL-HRSIV 450
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 442 LGTGSFGSVYKGTISD----WTNVAIKIF--NLQLERAFRSFDSECEVLRNVCHRNLIKI 495
LG G FGSV + + + VA+K+ ++ F E ++ H ++ K+
Sbjct: 31 LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKL 90
Query: 496 LSSCSNPD 503
+
Sbjct: 91 VGVSLRSR 98
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 435 EFNECNL-----LGTGSFGSVYKGTISDW-----TNVAIKIFNLQLERAFRSFDSECEVL 484
F E +L LG G+FGSV VA+K R F E ++L
Sbjct: 19 IFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQIL 78
Query: 485 RNVCHRNLIKILSSCSNPDFKALM 508
+ + ++K P ++L
Sbjct: 79 KALHSDFIVKYRGVSYGPGRQSLR 102
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 430 QRATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC 488
+R +F E L+G+G FG V+K D IK E+A R E + L +
Sbjct: 7 KRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER----EVKALAKLD 62
Query: 489 HRNLIK 494
H N++
Sbjct: 63 HVNIVH 68
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 416 LPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFR 475
LPL R T I +G G FG V++G VA+KIF+ + E R
Sbjct: 32 LPLLVQR-TIARTIVLQ-------ESIGKGRFGEVWRGKWRG-EEVAVKIFSSREE---R 79
Query: 476 SFDSECEV--LRNVCHRNLIKILSSCSNPD 503
S+ E E+ + H N++ +++ + +
Sbjct: 80 SWFREAEIYQTVMLRHENILGFIAADNKDN 109
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFN-LQLERAFRSFDSECEVLRNVCHRN 491
+ ++LG G+ +V++G AIK+FN + R E EVL+ + H+N
Sbjct: 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68
Query: 492 LIKIL 496
++K+
Sbjct: 69 IVKLF 73
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 440 NLLGTGSFGSVYKGTISD----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIK 494
++G G FG VY GT+ D + A+K N F +E ++++ H N++
Sbjct: 31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90
Query: 495 ILSSCSNPD 503
+L C +
Sbjct: 91 LLGICLRSE 99
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
+ LG G FG V+ T + T VA+K + +F +E V++ + H L+
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLV 246
Query: 494 KILSSCS 500
K+ + +
Sbjct: 247 KLHAVVT 253
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 429 IQRATDEFNECNLLGTGSFGSVYKGTISDW----TNVAIKIFN-LQLERAFRSFDSECEV 483
I + ++G G FG VY G D AIK + + + +F E +
Sbjct: 16 IPHERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLL 75
Query: 484 LRNVCHRNLIKILSSCSNPD 503
+R + H N++ ++ P+
Sbjct: 76 MRGLNHPNVLALIGIMLPPE 95
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-07
Identities = 56/294 (19%), Positives = 95/294 (32%), Gaps = 70/294 (23%)
Query: 70 SALTNCRHLKALSLGSNPLGGI----LPPVIGNFSASFQNFYAFNCKLKGNIPQEIG--- 122
+ + +L L N L I L N AS + L E+
Sbjct: 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75
Query: 123 --NLRGLTLLSLFNNDLNGTISPTMGRL-----KQLRGLSLKYNNLEGS--------IPY 167
+T L+L N L+ S + + + L L +N+
Sbjct: 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135
Query: 168 DLCHLKLMYGIRLTGNKLSG----HIPPCLASL-TSLRELHLGSNKLTS----------- 211
+ + L GN L + LA++ ++ L+L N L S
Sbjct: 136 LPASITS---LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192
Query: 212 SIPSSLWSLEYILMINLSSNSLNDS--------LPSNIQTLKVLRVLDLSRNQLSGD-IS 262
SIP+S+ SL +LS+N L S + L+L N L G +
Sbjct: 193 SIPASVTSL------DLSANLLGLKSYAELAYIFSSIPNHV---VSLNLCLNCLHGPSLE 243
Query: 263 TIGALVD----LETLSLASNQFQGPIPESVGSLIS-------LESLDLSGNNLS 305
+ L D L+T+ L + + E +L + + +D +G +
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 37/168 (22%), Positives = 56/168 (33%), Gaps = 38/168 (22%)
Query: 193 LASLTSLRELHLGSNKLTSSIPSSLWSL-----EYILMINLSSNSLNDS--------LPS 239
+ + L L N L S L + +NLS NSL L +
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 240 NIQTLKVLRVLDLSRNQLSGD-ISTIG-ALVD----LETLSLASNQFQGPIPESVGSLI- 292
+ L +LS N LS + L + L L N F +S
Sbjct: 78 IPANVTSL---NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS---SKSSSEFKQ 131
Query: 293 -------SLESLDLSGNNLSGK----IPKSLETL-SHLKQFNASHNRL 328
S+ SL+L GN+L K + + L + +++ N N L
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 49/262 (18%), Positives = 86/262 (32%), Gaps = 72/262 (27%)
Query: 123 NLRGLTLLSLFNNDLNGT----ISPTMGRLK-QLRGLSLKYNNL--EG------SIPYDL 169
G+T L L N+L + + L+L N+L + +
Sbjct: 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79
Query: 170 CHLKLMYGIRLTGNKLSGHIPPCLASL-----TSLRELHLGSNKLTS-----------SI 213
++ + L+GN LS L ++ L LG N +S ++
Sbjct: 80 ANVTS---LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136
Query: 214 PSSLWSLEYILMINLSSNSLNDS--------LPSNIQTLKVLRVLDLSRNQLSGDISTIG 265
P+S+ SL NL N L L + + L +L N L +
Sbjct: 137 PASITSL------NLRGNDLGIKSSDELIQILAAIPANVNSL---NLRGNNL-ASKNCAE 186
Query: 266 ---ALVD----LETLSLASNQFQGPIPESVGSL--------ISLESLDLSGNNLSGK--- 307
L + +L L++N +S L + SL+L N L G
Sbjct: 187 LAKFLASIPASVTSLDLSANLLG---LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243
Query: 308 -IPKSLETLSHLKQFNASHNRL 328
+ ++L HL+ ++ +
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIV 265
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 5e-07
Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 18/159 (11%)
Query: 187 GHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMIN--LSSNSLNDSLPSNIQTL 244
+ P L ++ L L + S +L+ + +I+ L + + D L S++ L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221
Query: 245 KVLRVLDLSRNQLSGDIST--------IGALVDLETLSLASNQFQGPIPESVGS---LIS 293
+ L L + D +L+ L + + Q + E L
Sbjct: 222 EKLV-LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 294 LESLDLSGNNLSGK----IPKSLETLSHLKQFNASHNRL 328
LE++D+S L+ + + ++ + HLK N +N L
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 7e-07
Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 19/139 (13%)
Query: 193 LASLTSLRELHLGSNKLTSSIP-----SSLWSLEYILMINLSSNSLNDSLPSNI------ 241
+L+ L + S L S+ S L +LE +++ + D +
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248
Query: 242 QTLKVLRVLDLSRNQLSGD----ISTIGALVDLETLSLASNQFQG----PIPESVGSLIS 293
L+ L + + L LET+ +++ + + V +
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308
Query: 294 LESLDLSGNNLSGKIPKSL 312
L+ +++ N LS ++ K L
Sbjct: 309 LKFINMKYNYLSDEMKKEL 327
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 49.6 bits (117), Expect = 1e-06
Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 18/155 (11%)
Query: 124 LRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC--------HLKLM 175
L + LL+ +S L+ L + L S+ D+ L L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227
Query: 176 YGIR-LTGNKLSGHIPPCLA--SLTSLRELHLGSNKLTSSIPSSLWS---LEYILMINLS 229
G+ + P + +L+ L + + + + L + +++S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287
Query: 230 SNSLNDS----LPSNIQTLKVLRVLDLSRNQLSGD 260
+ L D L ++ +K L+ +++ N LS +
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 431 RATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH 489
R +F E +LG G+FG V K D AIK E + SE +L ++ H
Sbjct: 3 RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNH 61
Query: 490 RNLIKILSS 498
+ +++ ++
Sbjct: 62 QYVVRYYAA 70
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 442 LGTGSFGSVYKGTI------SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495
LG G+FG V+ D VA+K E A + F E E+L + H+++++
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 496 LSSCS 500
C+
Sbjct: 109 FGVCT 113
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 7e-07
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 442 LGTGSFGSVYKGTISDW-----TNVAIKIF-NLQLERAFRSFDSECEVLRNVCHRNLIKI 495
LG G FG V VA+K E E+LRN+ H N++K
Sbjct: 29 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88
Query: 496 LSSCSNPDFKALM 508
C+ +
Sbjct: 89 KGICTEDGGNGIK 101
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFN-LQLERAFRSFDSECEVLRNVCHRN 491
+ ++LG G+ +V++G AIK+FN + R E EVL+ + H+N
Sbjct: 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68
Query: 492 LIKIL 496
++K+
Sbjct: 69 IVKLF 73
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 435 EFNECNL-----LGTGSFGSVYKGTISDW-----TNVAIKIFNLQ---LERAFRSFDSEC 481
F++ L LG G FG V VA+K L+ + + E
Sbjct: 27 VFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKA--LKADAGPQHRSGWKQEI 84
Query: 482 EVLRNVCHRNLIKILSSCSNPDFKALM 508
++LR + H ++IK C + +L
Sbjct: 85 DILRTLYHEHIIKYKGCCEDAGAASLQ 111
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 8e-07
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRN 255
+ EL+L N+ T +P L + +++ +I+LS+N ++ +L + + L L LS N
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN 88
Query: 256 QLSGDISTI--GA---LVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGN 302
+L I L L LSL N +PE L +L L + N
Sbjct: 89 RL----RCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 229 SSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESV 288
S+ L LP I L L NQ + + L + L++N+ +
Sbjct: 18 SNKGL-KVLPKGIPRDV--TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQS 73
Query: 289 -GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKN 340
++ L +L LS N L P++ + L L+ + N + ++ +G+F +
Sbjct: 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI--SVVPEGAFND 124
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 38/134 (28%)
Query: 154 LSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCL-ASLTSLRELHLGSNKLTSS 212
L L N +P +L + K + I L+ N++S + +++T L L L N+L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-- 91
Query: 213 IPSSLWSLEYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDISTI--GA--- 266
+P LK LR+L L N + S + GA
Sbjct: 92 -----------------------CIPPRTFDGLKSLRLLSLHGNDI----SVVPEGAFND 124
Query: 267 LVDLETLSLASNQF 280
L L L++ +N
Sbjct: 125 LSALSHLAIGANPL 138
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 440 NLLGTGSFGSVYKGTISD----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIK 494
++G G FG VY GT+ D + A+K N F +E ++++ H N++
Sbjct: 95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154
Query: 495 ILSSCSNPD 503
+L C +
Sbjct: 155 LLGICLRSE 163
|
| >3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 442 LGTGSFGSVYKGTI------SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495
LG G+FG V+ D VA+K A + F E E+L N+ H +++K
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 496 LSSCS 500
C
Sbjct: 83 YGVCG 87
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 422 RRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN---VAIKIFNLQLERAFRSFD 478
+ L+ DE + +LG G++G VY G D +N +AIK + R +
Sbjct: 10 CESDLLEYDYEYDENGDRVVLGKGTYGIVYAGR--DLSNQVRIAIKEIPERDSRYSQPLH 67
Query: 479 SECEVLRNVCHRNLIKILSSCSNPDF 504
E + +++ H+N+++ L S S F
Sbjct: 68 EEIALHKHLKHKNIVQYLGSFSENGF 93
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 20/156 (12%)
Query: 193 LASLTSLRELHLGSNKLT----SSIPSSLWSLEYIL-MINLSSNSLND-SLPSNIQTLKV 246
L+SLR+L+L ++T + + + L S + L +NL+S L+ L + +
Sbjct: 68 AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR 127
Query: 247 LRVLDLSRNQLSGD-ISTIGAL-----VDLETLSLASNQFQGP----IPESVGSLISLES 296
R L L N L + + L + TL L++N + E + S+
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187
Query: 297 LDLSGNNLSGK----IPKSLETLSHLKQFNASHNRL 328
L L L + + L+ L++ N ++N
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIK 494
LG G FG V K T +T VA+K+ R SE VL+ V H ++IK
Sbjct: 31 LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90
Query: 495 ILSSCS 500
+ +CS
Sbjct: 91 LYGACS 96
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-06
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN------VAIKIFNLQLERAFRSFDSE 480
+ Q + +LLG G+F VY+ T D + +K+ F
Sbjct: 58 TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQL 117
Query: 481 CEVLRNVCHRNLIKILSSCSNPD 503
E L+ +K S+ +
Sbjct: 118 MERLKPSMQHMFMKFYSAHLFQN 140
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIK 494
LG GSFG VY+G T VAIK N R F +E V++ ++++
Sbjct: 33 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 92
Query: 495 ILSSCS 500
+L S
Sbjct: 93 LLGVVS 98
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
+ LG G FG V+ G + T VA+K +F +E +++ + H+ L+
Sbjct: 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP-DAFLAEANLMKQLQHQRLV 71
Query: 494 KILSSCS 500
++ + +
Sbjct: 72 RLYAVVT 78
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 404 KRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNE----CNLLGTGSFGSVYKGT-ISDW 458
K K + D W++ ++ + LG+G+FG V++ +
Sbjct: 17 KYDGPKINDYDKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATG 76
Query: 459 TNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495
K N + +E ++ + H LI +
Sbjct: 77 RVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINL 113
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 433 TDEFNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHR 490
+ + LG G+FG VYK + T A K+ + E + E E+L H
Sbjct: 18 NEVWEIVGELGDGAFGKVYKAKNKE-TGALAAAKVIETKSEEELEDYIVEIEILATCDHP 76
Query: 491 NLIKILSS 498
++K+L +
Sbjct: 77 YIVKLLGA 84
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 431 RATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNL-QLERAFRSFDSECEVLRNVC 488
R +F LG G FG V++ D N AIK L E A E + L +
Sbjct: 2 RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLE 61
Query: 489 HRNLIKILSS 498
H +++ ++
Sbjct: 62 HPGIVRYFNA 71
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 442 LGTGSFGSVYKGT----ISDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKIL 496
+G G FG V++G + VAIK + F E +R H +++K++
Sbjct: 23 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82
Query: 497 SSCS 500
+
Sbjct: 83 GVIT 86
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFN-LQLERAFRSFDSECEVLRNVCHRNLIK 494
LG G+FG VY+G +S VA+K + E+ F E ++ H+N+++
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97
Query: 495 ILSSCS 500
+
Sbjct: 98 CIGVSL 103
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 442 LGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLI 493
LG G+FG V + + VA+K+ R+ SE ++L ++ H N++
Sbjct: 35 LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94
Query: 494 KILSSCSNPD 503
+L +C+ P
Sbjct: 95 NLLGACTKPG 104
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 442 LGTGSFGSVYKGT----ISDWTNVAIKIFNL-QLERAFRSFDSECEVLRNVCHRNLIKIL 496
LG G FG VY+G + NVA+K F SE +++N+ H +++K++
Sbjct: 20 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79
Query: 497 SSCS 500
Sbjct: 80 GIIE 83
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
+ LG G FG V+ GT + T VAIK +F E +V++ + H L+
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLV 242
Query: 494 KILSSCS 500
++ + S
Sbjct: 243 QLYAVVS 249
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 421 WRRTSYLDIQRATD---EFNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFR 475
R +D+ D F L+G G++G VYKG T AIK+ ++ +
Sbjct: 8 ARSLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVK-TGQLAAIKVMDVTGDE-EE 65
Query: 476 SFDSECEVLRNVC-HRNLIK 494
E +L+ HRN+
Sbjct: 66 EIKQEINMLKKYSHHRNIAT 85
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIKIFNL--QLERAFRSFDSECEVLRNVCHRNLIKILS 497
+G GSF +VYKG VA + + F E E+L+ + H N+++
Sbjct: 33 EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92
Query: 498 S 498
S
Sbjct: 93 S 93
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFN-LQLERAFRSFDSECEVLRNVCHRNLIK 494
LG G+FG VY+G +S VA+K + E+ F E ++ H+N+++
Sbjct: 79 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 138
Query: 495 ILSSCS 500
+
Sbjct: 139 CIGVSL 144
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 7e-06
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
+ LG G FG V+ GT + T VAIK +F E +V++ + H L+
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLV 325
Query: 494 KILSSCS 500
++ + S
Sbjct: 326 QLYAVVS 332
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 442 LGTGSFGSVYKGTISD--------WTNVAIKIFN-LQLERAFRSFDSECEVLRNV-CHRN 491
LG G+FG V VA+K+ E+ SE E+++ + H+N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 492 LIKILSSCS 500
+I +L +C+
Sbjct: 103 IINLLGACT 111
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 442 LGTGSFGSVYKGTI--------SDWTNVAIKIFN-LQLERAFRSFDSECEVLRNV-CHRN 491
LG G+FG V + T VA+K+ E+ SE E+++ + H+N
Sbjct: 77 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136
Query: 492 LIKILSSCS 500
+I +L +C+
Sbjct: 137 IINLLGACT 145
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 433 TDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN 491
F +LG+G+F V+ A+K S ++E VL+ + H N
Sbjct: 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN 67
Query: 492 LIKI 495
++ +
Sbjct: 68 IVTL 71
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC 499
+G G FG V G VA+K ++ + ++F +E V+ + H NL+++L
Sbjct: 27 QTIGKGEFGDVMLGDYRG-NKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVI 83
Query: 500 S 500
Sbjct: 84 V 84
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 442 LGTGSFGSVYKGTISDW-----TNVAIKIFNL-QLERAFRSFDSECEVLRNVCHRNLIKI 495
LG+G+FG+VYKG VAIK +A + E V+ +V + ++ ++
Sbjct: 23 LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 82
Query: 496 LSSCSNP 502
L C
Sbjct: 83 LGICLTS 89
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 442 LGTGSFGSVYKGT----ISDWTNVAIKIFN---LQLERAFRSFDSECEVLRNVCHRNLIK 494
LG GSFG V +G +VA+K L A F E + ++ HRNLI+
Sbjct: 26 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85
Query: 495 ILSSCSNP 502
+ P
Sbjct: 86 LYGVVLTP 93
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 442 LGTGSFGSVYKGTISDW-----TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKI 495
LG+G FG+V+KG V IK+ + ++F++ + ++ H +++++
Sbjct: 21 LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRL 80
Query: 496 LSSCSNP 502
L C
Sbjct: 81 LGLCPGS 87
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 442 LGTGSFGSVYKGT--------ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
LG G+F ++KG T V +K+ + SF ++ + H++L+
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75
Query: 494 KILSSCS 500
C
Sbjct: 76 LNYGVCV 82
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 430 QRATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV 487
+ + LGTG FG V + VAIK +L + + E ++++ +
Sbjct: 10 TQTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL 69
Query: 488 CHRNLIKIL 496
H N++
Sbjct: 70 NHPNVVSAR 78
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 435 EFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLI 493
F ++LG G+ G++ + D +VA+K + F D E ++LR H N+I
Sbjct: 25 SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE---CFSFADREVQLLRESDEHPNVI 81
Query: 494 KILSSCSNPDF 504
+ + + F
Sbjct: 82 RYFCTEKDRQF 92
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCS 500
LGTG FG V G +VAIK+ + F E +V+ N+ H L+++ C+
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCT 89
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 440 NLLGTGSFGSVYKGTI---SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIK 494
+++G G+FG V K I + AIK + R F E EVL + H N+I
Sbjct: 31 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 90
Query: 495 ILSSCSN 501
+L +C +
Sbjct: 91 LLGACEH 97
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFN-LQLERAFRSFDSECEVLRNVCHRNLIK 494
+G G+FG V++ +T VA+K+ F E ++ + N++K
Sbjct: 55 IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114
Query: 495 ILSSCS 500
+L C+
Sbjct: 115 LLGVCA 120
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIF--NLQLERAFRSFDSECEVLRNVCHRNLIKILSSC 499
+G+G FG V+ G + VAIK E F E EV+ + H L+++ C
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFI---EEAEVMMKLSHPKLVQLYGVC 72
Query: 500 S 500
Sbjct: 73 L 73
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 433 TDEFNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHR 490
+ +G GS G V + VA+K+ +L+ ++ +E ++R+ H
Sbjct: 44 RLLLDSYVKIGEGSTGIVCLAREKH-SGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102
Query: 491 NLIKILSS 498
N++++ S
Sbjct: 103 NVVEMYKS 110
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQ-LERAFRSFDSECEVLRNV-CHRNLI 493
LG G+FG V + T VA+K+ + SE +VL + H N++
Sbjct: 31 LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIV 90
Query: 494 KILSSCS 500
+L +C+
Sbjct: 91 NLLGACT 97
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 433 TDEFNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHR 490
++ +G G+ G+VY T VAI+ NLQ + +E V+R +
Sbjct: 19 KKKYTRFEKIGQGASGTVYTAMDVA-TGQEVAIRQMNLQQQPKKELIINEILVMRENKNP 77
Query: 491 NLIKILSS 498
N++ L S
Sbjct: 78 NIVNYLDS 85
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 442 LGTGSFGSVYKGTISD--------WTNVAIKIFN-LQLERAFRSFDSECEVLRNV-CHRN 491
LG G FG V VA+K+ E+ SE E+++ + H+N
Sbjct: 89 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 148
Query: 492 LIKILSSCS 500
+I +L +C+
Sbjct: 149 IINLLGACT 157
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 11/107 (10%)
Query: 401 RCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN 460
+ ++ + D+E L + Y + + +G GSFG V++ D
Sbjct: 26 KLQRLGPETEDNEGVLLTEKLKPVDY-EYREEVHWMTHQPRVGRGSFGEVHRMK--DKQT 82
Query: 461 ---VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504
A+K L+ E + ++ + + +
Sbjct: 83 GFQCAVKKVRLE-----VFRVEELVACAGLSSPRIVPLYGAVREGPW 124
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIF--NLQLERAFRSFDSECEVLRNVCHRNLIKILSSC 499
LG+G FG V G +VA+K+ E F E + + + H L+K C
Sbjct: 16 LGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFF---QEAQTMMKLSHPKLVKFYGVC 72
Query: 500 S 500
S
Sbjct: 73 S 73
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQL-----ERAFRSFDSECEVLRNV-CH 489
LG+G+FG V T VA+K L + SE +++ + H
Sbjct: 53 LGSGAFGKVMNATAYGISKTGVSIQVAVK----MLKEKADSSEREALMSELKMMTQLGSH 108
Query: 490 RNLIKILSSCS 500
N++ +L +C+
Sbjct: 109 ENIVNLLGACT 119
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 442 LGTGSFGSVYKGTISDWTN----VAIKIFNL-QLERAFRSFDSECEVLRNVCHRNLIKIL 496
+G+G G V G + VAIK ER R F SE ++ H N+I++
Sbjct: 57 IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLE 116
Query: 497 SSCS 500
+
Sbjct: 117 GVVT 120
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC 499
LG G F V + D A+K ++ E ++ R H N++++++ C
Sbjct: 36 KLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYC 95
Query: 500 SNPD 503
Sbjct: 96 LRER 99
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRN 491
++ +G G+FG V+ G + +D T VA+K L F E +L+ H N
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173
Query: 492 LIKILSSCS 500
+++++ C+
Sbjct: 174 IVRLIGVCT 182
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 403 RKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNL-----LGTGSFGSVYKGT--- 454
R + S+ +D+ + T Y E + +G G FG V++G
Sbjct: 355 RSHTVSVSETDDYAEIIDEEDT-YTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMS 413
Query: 455 -ISDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502
+ VAIK + F E +R H +++K++ +
Sbjct: 414 PENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITEN 463
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 442 LGTGSFGSVYKGT---ISDWTNVAIKIF-NLQLERAFRSFDSECEVLRNVCHRNLIKILS 497
LG G+FGSV +G +VAIK+ + E +++ + + +++++
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403
Query: 498 SCSNP 502
C
Sbjct: 404 VCQAE 408
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 442 LGTGSFGSVYKGTISDW-----TNVAIKIFNL-QLERAFRSFDSECEVLRNVCHRNLIKI 495
LG+G+FG+VYKG VAIK +A + E V+ +V + ++ ++
Sbjct: 23 LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 82
Query: 496 LSSCSNP 502
L C
Sbjct: 83 LGICLTS 89
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 440 NLLGTGSFGSVYKGTISD------WTNVAIKIFNLQ-LERAFRSFDSECEVLRNV-CHRN 491
LG G+FG V + T VA+K+ + SE +++ ++ H N
Sbjct: 52 KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHEN 111
Query: 492 LIKILSSCS 500
++ +L +C+
Sbjct: 112 IVNLLGACT 120
|
| >4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHR 490
+++ +G GSFG D IK N+ + E VL N+ H
Sbjct: 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83
Query: 491 NLIK 494
N+++
Sbjct: 84 NIVQ 87
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 442 LGTGSFGSVYKG-----TISDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKI 495
+G G FG VYKG + VAIK E+ F E ++ H N+I++
Sbjct: 52 IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111
Query: 496 LSSCS 500
S
Sbjct: 112 EGVIS 116
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 34/294 (11%)
Query: 41 GNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100
L +L L + T L S +T+CR +K L + + + +
Sbjct: 135 ARADDLETLKLDKCSGFTTDGLL------SIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188
Query: 101 ASFQNFYAFNCKLKGN-------IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRG 153
+ N + + N R L + + + + L
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV-GDFEILELVGFFKAAANLEE 247
Query: 154 LSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG--HIPPCLASLTSLRELHL-GSNKLT 210
N + +P +L + G G +P +R+L L + T
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307
Query: 211 SSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDL 270
+ + + ++ + + L Q K L+ L + R + LV
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367
Query: 271 ETL-SLASNQFQGPIPESVGSLISLESLDLSGNNLSGK----IPKSLETLSHLK 319
L +LA LE + + ++++ + I L+ L +
Sbjct: 368 RGLIALAQG------------CQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSS 498
+L G F VY+ + A+K E R+ E ++ + H N+++ S+
Sbjct: 35 VLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSA 94
Query: 499 CSNP 502
S
Sbjct: 95 ASIG 98
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQ-LERAFRSFDSECEVLR-NV 487
Q + +LG GS G+V VA+K + + A E ++L +
Sbjct: 11 QSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALM----EIKLLTESD 66
Query: 488 CHRNLIKILSSCSNPDF 504
H N+I+ S + F
Sbjct: 67 DHPNVIRYYCSETTDRF 83
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRN 491
+G+G V++ AIK NL+ + S+ +E L + +
Sbjct: 34 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 87
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH 489
++ + C ++G GSFG V++ + + VAIK R E +++R V H
Sbjct: 36 EQREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNR----ELQIMRIVKH 91
Query: 490 RNLIKIL----SSCSNPDFKAL 507
N++ + S+ D L
Sbjct: 92 PNVVDLKAFFYSNGDKKDEVFL 113
|
| >3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 442 LGTGSFGSVYKGTISDW------TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIK 494
LG FG VYKG + VAIK + F E + + H N++
Sbjct: 17 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76
Query: 495 ILSSCS 500
+L +
Sbjct: 77 LLGVVT 82
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 442 LGTGSFGSVYKGTI----SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKIL 496
+G G FG V G + +VAIK + E+ R F E ++ H N+I++
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLE 112
Query: 497 SSCS 500
+
Sbjct: 113 GVVT 116
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIK---IFNLQLERAFRSFDSECEVLRNVCH 489
F +G G F VY+ + D VA+K IF+L +A E ++L+ + H
Sbjct: 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91
Query: 490 RNLIK 494
N+IK
Sbjct: 92 PNVIK 96
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 442 LGTGSFGSVYKGTI---SDWTNVAIKIF--NLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
LG+G+FG+V KG VA+KI +E V++ + + +++++
Sbjct: 25 LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 84
Query: 497 SSCSNP 502
C
Sbjct: 85 GICEAE 90
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
+G G FG V G VA+K ++ + ++F +E V+ + H NL+++L
Sbjct: 201 IGKGEFGDVMLGDYRG-NKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 257
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 401 RCRKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNE----CNLLGTGSFGSVYKGT-I 455
+ + S + D W++ ++ D + LGTG+FG V++ T
Sbjct: 120 KIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTER 179
Query: 456 SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495
+ N A K E + E + + + H L+ +
Sbjct: 180 ATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNL 219
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 45/141 (31%)
Query: 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247
IP EL L N+L +SS+ L LP L
Sbjct: 26 DIP------LHTTELLLNDNELGR----------------ISSDGLFGRLPH-------L 56
Query: 248 RVLDLSRNQLSGDISTI--GA---LVDLETLSLASNQFQGPIPESV-GSLISLESLDLSG 301
L+L RNQL+ I A ++ L L N+ + I + L L++L+L
Sbjct: 57 VKLELKRNQLT----GIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYD 111
Query: 302 NNLSGKIPK----SLETLSHL 318
N +S + L +L+ L
Sbjct: 112 NQISC-VMPGSFEHLNSLTSL 131
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 38/135 (28%)
Query: 154 LSLKYNNLEGSIPYD--LCHLKLMYGIRLTGNKLSGHIPPCL-ASLTSLRELHLGSNKLT 210
L L N L I D L + + L N+L+G I P + ++EL LG NK+
Sbjct: 34 LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK 91
Query: 211 SSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTI--GA-- 266
I + ++ L L+ L+L NQ+ S + G+
Sbjct: 92 -EISNKMF----------------LGLHQ-------LKTLNLYDNQI----SCVMPGSFE 123
Query: 267 -LVDLETLSLASNQF 280
L L +L+LASN F
Sbjct: 124 HLNSLTSLNLASNPF 138
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHR 490
+++ +GTGS+G K SD + K + E + SE +LR + H
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65
Query: 491 NLIKILSS 498
N+++
Sbjct: 66 NIVRYYDR 73
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
++ +LG G FG V+K + +A KI + + +E V+ + H NLI
Sbjct: 90 TVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLI 149
Query: 494 KI 495
++
Sbjct: 150 QL 151
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 442 LGTGSFGSVYKGT---ISDWTNVAIKIF-NLQLERAFRSFDSECEVLRNVCHRNLIKILS 497
LG G+FGSV +G +VAIK+ + E +++ + + +++++
Sbjct: 18 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77
Query: 498 SCS 500
C
Sbjct: 78 VCQ 80
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 442 LGTGSFGSVYKGT-ISDWTNVAIKIFN--------LQLERAFRSFDSECEVLRNVCHRNL 492
LG+G+ G V VAI+I + + + ++E E+L+ + H +
Sbjct: 143 LGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 202
Query: 493 IKILSSCSNPDF 504
IKI + D+
Sbjct: 203 IKIKNFFDAEDY 214
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-05
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 433 TDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCH 489
+D ++ LG G+F V + + A KI N + R F+ + E + R + H
Sbjct: 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64
Query: 490 RNLIKILSSCSNPDF 504
N++++ S F
Sbjct: 65 PNIVRLHDSIQEESF 79
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 9e-05
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 433 TDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFD-----SECEVLRN 486
+++ +G GS+G V AIKI N R D +E +++
Sbjct: 25 QKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKK 84
Query: 487 VCHRNLIKILSSCSNPDF 504
+ H N+ ++ + +
Sbjct: 85 LHHPNIARLYEVYEDEQY 102
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRN 491
+G+G V++ AIK NL+ + S+ +E L + +
Sbjct: 15 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 68
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 9e-05
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 442 LGTGSFGSVYKGT-ISDWTNVAIKIFN--------LQLERAFRSFDSECEVLRNVCHRNL 492
LG+G+ G V VAIKI + + + ++E E+L+ + H +
Sbjct: 18 LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77
Query: 493 IKI 495
IKI
Sbjct: 78 IKI 80
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 433 TDEFNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFRSFDS---ECEVLRNV 487
F++ +G GSFG+VY + VAIK + +++ + E L+ +
Sbjct: 53 EKLFSDLREIGHGSFGAVYFA-RDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL 111
Query: 488 CHRNLIKILSS 498
H N I+
Sbjct: 112 RHPNTIQYRGC 122
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 442 LGTGSFGSVYKGTISDW-TNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCS 500
LG G +G VY+G + VA+K F E V++ + H NL+++L C+
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 79
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 429 IQRATDEFNE----CNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSEC 481
+ A+ +F++ LG G+F V + + A KI N + R F+ + E
Sbjct: 20 MMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREA 79
Query: 482 EVLRNVCHRNLIKILSSCSNPDF 504
+ R + H N++++ S F
Sbjct: 80 RICRKLQHPNIVRLHDSIQEESF 102
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 433 TDEFNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHR 490
+ + ++G GSFG VY+ + D + VAIK R E +++R + H
Sbjct: 53 EVSYTDTKVIGNGSFGVVYQAKLCD-SGELVAIKKVLQDKRFKNR----ELQIMRKLDHC 107
Query: 491 NLIKIL----SSCSNPDFKAL 507
N++++ SS D L
Sbjct: 108 NIVRLRYFFYSSGEKKDEVYL 128
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNL 492
+ + LG G +G VY+G VA+K F E V++ + H NL
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 278
Query: 493 IKILSSCS 500
+++L C+
Sbjct: 279 VQLLGVCT 286
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 433 TDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFD-----SECEVLRN 486
T+E+ LG G+F V + + A I N + + D E + R
Sbjct: 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIIN---TKKLSARDHQKLEREARICRL 66
Query: 487 VCHRNLIKILSSCSNPDF 504
+ H N++++ S S
Sbjct: 67 LKHPNIVRLHDSISEEGH 84
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRN 491
+G+G V++ AIK NL+ + S+ +E L + +
Sbjct: 62 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 115
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 429 IQRATDEFNEC----NLLGTGSFGSVYKGT-ISDWTNVAIKIFN---LQLERAFRSFDSE 480
+Q +T F++ +LG GSFG V A+K+ + ++ + S E
Sbjct: 17 VQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE 76
Query: 481 CEVLRNVCHRNLIKILSSCSNPDF 504
++L+ + H N++K+ + +
Sbjct: 77 VQLLKQLDHPNIMKLYEFFEDKGY 100
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 442 LGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495
+G GS+G V A K F E E+++++ H N+I++
Sbjct: 17 IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRL 71
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 431 RATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV 487
R T EF+E +G+G FGSV+K D AIK L ++ E +
Sbjct: 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL 67
Query: 488 C-HRNLIKILSS 498
H ++++ S+
Sbjct: 68 GQHSHVVRYFSA 79
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 431 RATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNL-QLERAFRSFDSECEVLRNVC 488
R +F +G G FG V++ D N AIK L E A E + L +
Sbjct: 3 RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLE 62
Query: 489 HRNLIKILSSCSNPDF 504
H +++ ++
Sbjct: 63 HPGIVRYFNAWLETPP 78
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 442 LGTGSFGSVYKGT-ISDWTNVAIKIFN--LQLERAFRSFDSECEVLRNVCHRNLIKILSS 498
LG GSFG V K A+K+ N + + E E+L+ + H N++K+
Sbjct: 30 LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEI 89
Query: 499 CSNPDF 504
+
Sbjct: 90 LEDSSS 95
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 226 INLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL-SGDISTIGALVDLETLSLASNQFQGPI 284
++ S SL S+P+ I T +VL L NQ+ + L L L L +NQ +
Sbjct: 14 VDCSGKSL-ASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-L 69
Query: 285 PESV-GSLISLESLDLSGNNLSGKIPK----SLETLSHLKQFN 322
P V L L L L+ N L IP+ +L++L+H+ N
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLN 111
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 201 ELHLGSNKLTS---SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257
+ S TS IP+ L+ L +NSL L L L L N+L
Sbjct: 11 TVECYSQGRTSVPTGIPAQTTYLD------LETNSLKSLPNGVFDELTSLTQLYLGGNKL 64
Query: 258 SGDISTI-GALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPKSL-ET 314
+ + L L L+L++NQ Q +P V L L+ L L+ N L +P + +
Sbjct: 65 QSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDK 122
Query: 315 LSHLKQFNASHNRLEGKILVKGSFKNFS 342
L+ LK N+L K + G F +
Sbjct: 123 LTQLKDLRLYQNQL--KSVPDGVFDRLT 148
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 39/290 (13%), Positives = 85/290 (29%), Gaps = 44/290 (15%)
Query: 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101
+ ++ L+L+ + LA + CR+LK L L + + + + +F
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLA------AIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181
Query: 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNL 161
++ +L L + L + + + R L+ L L
Sbjct: 182 TY------------------TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-- 221
Query: 162 EGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLE 221
+ L P L L + + S + +L +
Sbjct: 222 ----------------VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265
Query: 222 YILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD--ISTIGALVDLETLSLASNQ 279
+ ++ +++ LP+ L L+LS + + + L+ L +
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325
Query: 280 FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
+ + L L + + P T L + +LE
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 226 INLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL-SGDISTIGALVDLETLSLASNQFQGPI 284
+N + L S+P+ I T + L L+ NQ+ + LV+L+ L SN+ I
Sbjct: 17 VNCQNIRL-ASVPAGIPT--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-I 72
Query: 285 PESV-GSLISLESLDLSGNNLSGKIPK----SLETLSHLKQFN 322
P V L L LDL+ N+L IP+ +L++L+H+ +N
Sbjct: 73 PTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYN 114
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 433 TDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCH 489
+ +N +LG GSFG V K A+K+ N + + E E+L+ + H
Sbjct: 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80
Query: 490 RNLIKILSSCSNPDF 504
N++K+ +
Sbjct: 81 PNIMKLFEILEDSSS 95
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 7/109 (6%)
Query: 403 RKRSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNEC----NLLGTGSFGSVYKGT-ISD 457
S E+ + T + I +E LG+G++G V
Sbjct: 2 HHHHHHSSGRENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVT 61
Query: 458 WTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504
AIKI + E VL+ + H N++K+ +
Sbjct: 62 HVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRN 110
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 433 TDEFNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNL-QLERAFRSFDSECEVLRNVCH 489
+ F + +G GSFG V+KG I + T VAIKI +L + E E VL
Sbjct: 21 EELFTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS 79
Query: 490 RNLIKILSS 498
+ K S
Sbjct: 80 PYVTKYYGS 88
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 442 LGTGSFGSVYKGT-ISDWTNVAIKIFN-LQLERAFRSFDSECEVLRNVCHRNLIKI 495
LG+G+FG V+ S IK N + + ++E EVL+++ H N+IKI
Sbjct: 30 LGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKI 85
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNL 492
D++ ++G+G+ V VAIK NL+ + + L
Sbjct: 15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLE------KCQTSMDELLKE----- 63
Query: 493 IKILSSCSNP 502
I+ +S C +P
Sbjct: 64 IQAMSQCHHP 73
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 423 RTSYLDIQRATDEFNE----CNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSF 477
R + L +T F E +LG G V + A+KI ++ +F +
Sbjct: 2 RDAALPGSHSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAE 61
Query: 478 D---------SECEVLRNVC-HRNLIKILSSCSNPDF 504
+ E ++LR V H N+I++ + F
Sbjct: 62 EVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTF 98
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 9e-04
Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 165 IPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPS----SLWSL 220
IP L+L NKL LT L +L L N++ S+P L L
Sbjct: 26 IPSSATRLELES------NKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKL 78
Query: 221 EYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQL-SGDISTIGALVDLETLSLASN 278
+ L N L SLP+ + L L+ L L NQL S L L+ + L +N
Sbjct: 79 TI---LYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Query: 279 Q 279
Sbjct: 135 P 135
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 524 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.98 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.97 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.97 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.96 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.93 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.93 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.91 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.91 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.91 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.9 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.9 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.9 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.9 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.9 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.89 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.89 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.88 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.87 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.84 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.83 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.83 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.83 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.82 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.82 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.8 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.79 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.79 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.77 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.76 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.75 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.75 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.74 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.73 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.73 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.72 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.71 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.71 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.71 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.7 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.7 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.69 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.69 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.69 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.68 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.67 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.67 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.66 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.64 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.64 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.63 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.63 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.62 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.61 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.6 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.59 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.59 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.59 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.58 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.57 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.56 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.54 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.51 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.5 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.47 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.46 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.45 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.45 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.44 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.44 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.43 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.43 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.42 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.41 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.41 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.4 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.4 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.39 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.39 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.37 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.37 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.36 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.36 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.36 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.36 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.36 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.36 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.35 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.35 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.35 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.35 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.35 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.34 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.34 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.34 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.34 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.34 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.33 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.33 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.33 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.33 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.32 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.32 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.32 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.32 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.32 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.32 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.32 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.32 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.32 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.32 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.32 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.31 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.31 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.31 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.31 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.31 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.31 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.3 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.3 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.3 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.3 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.3 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.3 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.3 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.3 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.3 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.29 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.29 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.29 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.29 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.29 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.28 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.28 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.28 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.28 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.28 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.28 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.28 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.27 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.27 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.27 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.27 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.27 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.26 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.26 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.26 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.26 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.26 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.26 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.26 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.26 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.26 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.25 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.25 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.25 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.25 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.25 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.25 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.25 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.25 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.25 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.25 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.24 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.24 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.24 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.24 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.24 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.24 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.24 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.24 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.24 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.24 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.24 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.23 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.23 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.23 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.23 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.23 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.23 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.23 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.23 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.22 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.22 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.22 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.22 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.22 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.22 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.22 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.22 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.21 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.21 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.21 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.21 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.21 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.21 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.21 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.21 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.21 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.2 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.2 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.2 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.2 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.2 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.19 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.19 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.19 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.19 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.19 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.19 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.19 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.19 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.19 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.18 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.18 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.18 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.18 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.17 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.17 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.16 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.16 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.16 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.16 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.15 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.15 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.15 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.15 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.15 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.14 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.14 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.14 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.13 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.13 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.13 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.13 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.13 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.13 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.12 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.12 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.12 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.12 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.11 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.11 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.11 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.11 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.11 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.11 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.11 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.11 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.1 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.1 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.1 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.09 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.09 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.09 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.09 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.09 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.09 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.09 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.09 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.07 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.07 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.07 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.07 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.06 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.06 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.06 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.05 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.05 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.04 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.04 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.04 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.04 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.04 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.04 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 99.04 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.04 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.02 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.01 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 98.99 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 98.99 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 98.99 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 98.99 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 98.99 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 98.99 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 98.99 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 98.98 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 98.97 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 98.95 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 98.95 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 98.95 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.94 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 98.93 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 98.92 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 98.92 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.91 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 98.91 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 98.91 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 98.9 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 98.9 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 98.9 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 98.89 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 98.88 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.87 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 98.86 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 98.86 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 98.81 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 98.81 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 98.8 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 98.8 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 98.8 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 98.76 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 98.74 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 98.73 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.67 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.56 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.44 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.37 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.33 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 98.19 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.17 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.15 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 97.89 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 97.82 | |
| 3tm0_A | 263 | Aminoglycoside 3'-phosphotransferase; protein kina | 97.57 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.38 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.28 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.19 | |
| 3d1u_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 97.12 | |
| 1nd4_A | 264 | Aminoglycoside 3'-phosphotransferase; protein kina | 97.09 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.07 | |
| 3dxp_A | 359 | Putative acyl-COA dehydrogenase; protein kinase-li | 95.34 | |
| 3f7w_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 94.59 | |
| 3jr1_A | 312 | Putative fructosamine-3-kinase; YP_719053.1, struc | 93.57 | |
| 2olc_A | 397 | MTR kinase, methylthioribose kinase; kinase ADP-2H | 92.09 | |
| 4gkh_A | 272 | Aminoglycoside 3'-phosphotransferase APHA1-IAB; py | 91.89 | |
| 3r70_A | 320 | Aminoglycoside phosphotransferase; structural geno | 90.8 | |
| 3ovc_A | 362 | Hygromycin-B 4-O-kinase; aminoglycoside phosphotra | 88.58 | |
| 3tdw_A | 306 | Gentamicin resistance protein; kinase, phosphoryl | 87.41 | |
| 3cxl_A | 463 | N-chimerin; SH2, RHO-GAP, structural genomics cons | 85.5 | |
| 3ats_A | 357 | Putative uncharacterized protein; hypothetical pro | 82.61 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=386.20 Aligned_cols=343 Identities=33% Similarity=0.546 Sum_probs=292.4
Q ss_pred CCCccEEEccCCcccccCCcc-cccccCCCEEEccccccCC-CCC------------------CccccCccccCCC--CC
Q 040301 19 HQIYWVMDLSSNSFSGHIPNT-FGNLRHLSSLLLTWNNLTT-ESS------------------LADQWSFLSALTN--CR 76 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~-~~~------------------~~~~~~~~~~~~~--l~ 76 (524)
.++|+.|++++|+++|.+|.. |.++++|++|++++|++++ ++. +.+.+| ..+.. ++
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~--~~~~~~~~~ 394 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL--PNLCQNPKN 394 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC--TTTTCSTTC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC--hhhhhcccC
Confidence 356666666666666566554 5666666666666666542 110 011122 33433 67
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
+|++|++++|.+.+.+|..+..+. +|+.|++++|.+++.+|..|+++++|+.|++++|.+.+..|..+..+++|++|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 899999999999888999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc
Q 040301 157 KYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236 (524)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (524)
++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 99999999999999999999999999999989999999999999999999999988999999999999999999988766
Q ss_pred CCcC----------------------------------------------------------------------ccCCCC
Q 040301 237 LPSN----------------------------------------------------------------------IQTLKV 246 (524)
Q Consensus 237 ~~~~----------------------------------------------------------------------~~~l~~ 246 (524)
+|.. ++.+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 6643 334578
Q ss_pred CCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccC
Q 040301 247 LRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325 (524)
Q Consensus 247 L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~ 325 (524)
|+.|++++|++++.. ..++.+++|+.|+|++|++++.+|..++.+++|+.|||++|++++.+|..+..++.|+.+++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 999999999999755 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCccccCCCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 040301 326 NRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGD 367 (524)
Q Consensus 326 n~l~~~~~~~~~~~~~~~~~~~~n~~lc~~p~~~~~~c~~~~ 367 (524)
|+++|.+|..+.+..+....+.||+.+||.|. ++|....
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~C~~~~ 752 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PRCDPSN 752 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CCCCSCC
T ss_pred CcccccCCCchhhccCCHHHhcCCchhcCCCC---cCCCCCc
Confidence 99999999999999999999999999999763 3786443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=358.72 Aligned_cols=326 Identities=34% Similarity=0.497 Sum_probs=240.3
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
++|+.|++++|++++.+|..|+++++|++|++++|.+++ .+|. ..+.++++|++|++++|.+.+.+|..+..+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 366 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG------ELPM-DTLLKMRGLKVLDLSFNEFSGELPESLTNL 366 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE------ECCH-HHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC------cCCH-HHHhcCCCCCEEeCcCCccCccccHHHHhh
Confidence 567777777777777777777777777777777776652 1220 236677777777777777776666665544
Q ss_pred cc--------------------------cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCe
Q 040301 100 SA--------------------------SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRG 153 (524)
Q Consensus 100 ~~--------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 153 (524)
.. +|+.|++++|.+++.+|..|.++++|+.|++++|++++..|..+..+++|+.
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence 22 4555666666666666777777777777777777777777777777777777
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcC
Q 040301 154 LSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSL 233 (524)
Q Consensus 154 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 233 (524)
|++++|.+++.+|..+..+++|+.|++++|++.+..|..+..+++|++|++++|++.+.+|..+..+++|+.|++++|.+
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 77777777777777777777778888888777777777777788888888888888777777788888888888888888
Q ss_pred cccCCcCccCCCCCCEEEcCCCcCcccc-c--------------------------------------------------
Q 040301 234 NDSLPSNIQTLKVLRVLDLSRNQLSGDI-S-------------------------------------------------- 262 (524)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-------------------------------------------------- 262 (524)
.+.+|..+..+++|+.|++++|.+++.. .
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 7777877888888888888887766321 1
Q ss_pred --------------------cccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEE
Q 040301 263 --------------------TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFN 322 (524)
Q Consensus 263 --------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~ 322 (524)
.+..+++|+.|+|++|++++.+|..++.+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 123356788888888888888888888888888888888888888888888888888888
Q ss_pred ccCCcCccccCCC-CcCCCCCcccccCCCCC
Q 040301 323 ASHNRLEGKILVK-GSFKNFSAESFFGNYAL 352 (524)
Q Consensus 323 l~~n~l~~~~~~~-~~~~~~~~~~~~~n~~l 352 (524)
+++|.++|.+|.. ..+..+..+++.+|...
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 8888888887753 45666777777777543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=337.92 Aligned_cols=333 Identities=21% Similarity=0.207 Sum_probs=295.8
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
|..-+++++.|||++|++++..|..|.++++|++|+|++|.++.+.. ..|.++++|++|+|++|.+....+.
T Consensus 27 p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 27 PEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP--------GAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp CSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh--------hhhhCCccCCEEECCCCcCCccCcc
Confidence 44445799999999999998889999999999999999999987643 7899999999999999999987777
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCC
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKL 174 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 174 (524)
.|..+. +|+.|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++
T Consensus 99 ~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred cccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 788887 9999999999999999999999999999999999999998999999999999999999999777778999999
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCC
Q 040301 175 MYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254 (524)
Q Consensus 175 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 254 (524)
|+.|++++|.+.+..+..|..+++|+.|++++|...+.++.......+|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 99999999999988888899999999999999988878887777778999999999999865546789999999999999
Q ss_pred CcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 255 NQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 255 n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
|.+++.+ ..+..+++|+.|+|++|++.+..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++.|.+.
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 9999877 568899999999999999999889999999999999999999998888888999999999999999998765
Q ss_pred CCCcCCCCCcccccCCCCCCCCC
Q 040301 334 VKGSFKNFSAESFFGNYALCGLP 356 (524)
Q Consensus 334 ~~~~~~~~~~~~~~~n~~lc~~p 356 (524)
....+.......+.++...|..|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 338 LLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GHHHHTTTTSSCCTTCCCBEEES
T ss_pred hHhHHhhhhccccCccCceeCCc
Confidence 43222333334555666666543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=333.98 Aligned_cols=333 Identities=20% Similarity=0.212 Sum_probs=234.1
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCC-CCCCccccCccccCCCCCCCCEEEccCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTT-ESSLADQWSFLSALTNCRHLKALSLGSNPLGGIL 92 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 92 (524)
+|. -+++|++|||++|++++..|..|.++++|++|++++|.+.. ++. ..|.++++|++|+|++|.+.+..
T Consensus 25 lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~--------~~~~~l~~L~~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 25 VPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN--------NTFRGLSSLIILKLDYNQFLQLE 95 (455)
T ss_dssp CCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT--------TTTTTCTTCCEEECTTCTTCEEC
T ss_pred CCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc--------ccccccccCCEEeCCCCccCccC
Confidence 344 34899999999999998889999999999999999998863 222 67899999999999999999888
Q ss_pred ChhHhcCcccccEEEeccCcccccCCcc--ccCCCCCCeEEcccCcCcccCCcc-ccCCCCCCeEecccCcccccCCccc
Q 040301 93 PPVIGNFSASFQNFYAFNCKLKGNIPQE--IGNLRGLTLLSLFNNDLNGTISPT-MGRLKQLRGLSLKYNNLEGSIPYDL 169 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~ 169 (524)
|..|..+. +|++|++++|.+++..+.. |.++++|++|++++|++.+..|.. +..+++|++|++++|.+++..+..+
T Consensus 96 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 96 TGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp TTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred hhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 99999998 9999999999998755555 899999999999999999887776 8999999999999999998888777
Q ss_pred cCC--CCCCEEEccCCcccccCCcc--------ccCCCCCCEEEccCCcCCCccChhcc---------------------
Q 040301 170 CHL--KLMYGIRLTGNKLSGHIPPC--------LASLTSLRELHLGSNKLTSSIPSSLW--------------------- 218 (524)
Q Consensus 170 ~~l--~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------- 218 (524)
..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+.
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 665 44555555555554322221 11334455555555544432222211
Q ss_pred ------------------CCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCc
Q 040301 219 ------------------SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQ 279 (524)
Q Consensus 219 ------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~ 279 (524)
..++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+ ..+..+++|+.|+|++|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 1145666666666666656666666666666666666666554 455666666666666666
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCC-CcCCCCCcccccCCCCCCCCC
Q 040301 280 FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVK-GSFKNFSAESFFGNYALCGLP 356 (524)
Q Consensus 280 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~-~~~~~~~~~~~~~n~~lc~~p 356 (524)
+.+..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+.. ..+..+..+++.+|+..|..|
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 66555666666666666666666666555666666666666666666666533321 344555566666666555544
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=327.26 Aligned_cols=165 Identities=21% Similarity=0.222 Sum_probs=100.3
Q ss_pred cccCCCCCCEEEccCCcCCCccC-hhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc--ccccccccC
Q 040301 192 CLASLTSLRELHLGSNKLTSSIP-SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG--DISTIGALV 268 (524)
Q Consensus 192 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~l~ 268 (524)
.+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+ .+..+..++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 34444555555555555554444 455556666666666666665556666666666666666666665 235566666
Q ss_pred CCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCC-CCCccccc
Q 040301 269 DLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFK-NFSAESFF 347 (524)
Q Consensus 269 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~-~~~~~~~~ 347 (524)
+|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++........+. .+..+++.
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEcc
Confidence 67777777777666666666667777777777777766666666667777777777776664332222332 35666666
Q ss_pred CCCCCCCCC
Q 040301 348 GNYALCGLP 356 (524)
Q Consensus 348 ~n~~lc~~p 356 (524)
+|+..|..+
T Consensus 554 ~N~~~c~c~ 562 (606)
T 3vq2_A 554 NNSVACICE 562 (606)
T ss_dssp SCCCCCSST
T ss_pred CCCcccCCc
Confidence 776666533
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=314.95 Aligned_cols=317 Identities=19% Similarity=0.199 Sum_probs=272.1
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC-CChhHhcCc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI-LPPVIGNFS 100 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~ 100 (524)
-+.++.++++++ .+|. + .++|++|+|++|.++++.. ..+.++++|++|++++|.+.+. .+..|..+.
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~--------~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~ 79 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNE--------TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECT--------TTTSSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCCh--------hHhccCccccEEECcCCcccceECcccccccc
Confidence 457899999998 7776 3 3789999999999987643 7899999999999999999755 467788888
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCc--cccCCCCCCeEecccCcccccCCcc-ccCCCCCCE
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP--TMGRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYG 177 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~ 177 (524)
+|++|++++|.+++..|..|+++++|++|++++|++++..+. .+..+++|++|++++|.+++..|.. +..+++|+.
T Consensus 80 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 80 -SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp -TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred -cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 999999999999999999999999999999999999875444 4899999999999999999887876 899999999
Q ss_pred EEccCCcccccCCccccCC--CCCCEEEccCCcCCCccChh--------ccCCCCCCEEEcCCCcCcccCCcCcc-----
Q 040301 178 IRLTGNKLSGHIPPCLASL--TSLRELHLGSNKLTSSIPSS--------LWSLEYILMINLSSNSLNDSLPSNIQ----- 242 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~----- 242 (524)
|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..|..+.
T Consensus 159 L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 238 (455)
T 3v47_A 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238 (455)
T ss_dssp EECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT
T ss_pred EeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc
Confidence 9999999998888888766 68999999999998654333 33568899999999988754333221
Q ss_pred ----------------------------------CCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCccc
Q 040301 243 ----------------------------------TLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPES 287 (524)
Q Consensus 243 ----------------------------------~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~ 287 (524)
..++|+.|++++|.+.+.. ..+..+++|+.|++++|++.+..|..
T Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 318 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318 (455)
T ss_dssp CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence 1268999999999998865 67889999999999999999888989
Q ss_pred ccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcCCCCCcccccCCCC
Q 040301 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSFKNFSAESFFGNYA 351 (524)
Q Consensus 288 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~~~~~~~~~~~n~~ 351 (524)
+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+. ...+..+..+++.+|..
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 99999999999999999988899999999999999999999887554 35677888888888753
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=312.25 Aligned_cols=323 Identities=20% Similarity=0.166 Sum_probs=293.0
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
.-+.++.++++++ .+|..+. +++++|+|++|+++.+.. ..|.++++|++|+|++|.+.+..|..|..+.
T Consensus 12 ~~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 12 QDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQ--------DEFASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp TTTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECT--------TTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECH--------hHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 3468999999998 7887764 589999999999988754 7889999999999999999998899999998
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|.+....+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++
T Consensus 81 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 81 -NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp -TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred -cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 9999999999999777778999999999999999999998999999999999999999999888999999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+++.
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 99999977777899999999999999999987778899999999999999988777777777777999999999999988
Q ss_pred c-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcC
Q 040301 261 I-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSF 338 (524)
Q Consensus 261 ~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~ 338 (524)
+ ..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+. ...+
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 7 5788999999999999999988888899999999999999999998899999999999999999999875443 2445
Q ss_pred CCCCcccccCCCCCCCC
Q 040301 339 KNFSAESFFGNYALCGL 355 (524)
Q Consensus 339 ~~~~~~~~~~n~~lc~~ 355 (524)
..+..+++.+|+..|..
T Consensus 320 ~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 320 GNLETLILDSNPLACDC 336 (477)
T ss_dssp GGCCEEECCSSCEECSG
T ss_pred cccCEEEccCCCccCcc
Confidence 67888999999988863
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=318.08 Aligned_cols=323 Identities=20% Similarity=0.196 Sum_probs=221.1
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP 93 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 93 (524)
+|..-+++++.||+++|++++..|..|.++++|++|+|++|+++++.. ..|.++++|++||+++|.++. +|
T Consensus 46 ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~-lp 116 (562)
T 3a79_B 46 VPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--------HVFLFNQDLEYLDVSHNRLQN-IS 116 (562)
T ss_dssp CCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT--------TTTTTCTTCCEEECTTSCCCE-EC
T ss_pred CCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH--------HHhCCCCCCCEEECCCCcCCc-cC
Confidence 344334899999999999998888899999999999999999987643 778899999999999999984 44
Q ss_pred hhHhcCcccccEEEeccCcccc-cCCccccCCCCCCeEEcccCcCcccCCccccCCCCC--CeEecccCcc--cccCCcc
Q 040301 94 PVIGNFSASFQNFYAFNCKLKG-NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQL--RGLSLKYNNL--EGSIPYD 168 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~ 168 (524)
.. .+. +|++|++++|.+++ ..|..|+++++|++|++++|++.+. .+..+++| ++|++++|.+ ++..|..
T Consensus 117 ~~--~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 117 CC--PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp SC--CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred cc--ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccc
Confidence 44 566 99999999999987 4568899999999999999998753 34455555 8888888888 5555555
Q ss_pred ccCCC---------------------------------------------------------------------------
Q 040301 169 LCHLK--------------------------------------------------------------------------- 173 (524)
Q Consensus 169 ~~~l~--------------------------------------------------------------------------- 173 (524)
+..+.
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 270 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence 54432
Q ss_pred ------CCCEEEccCCcccccCCccc-----------------------------------------------------c
Q 040301 174 ------LMYGIRLTGNKLSGHIPPCL-----------------------------------------------------A 194 (524)
Q Consensus 174 ------~L~~L~l~~n~l~~~~~~~~-----------------------------------------------------~ 194 (524)
+|++|++++|.+.+.+|..+ .
T Consensus 271 ~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 350 (562)
T 3a79_B 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350 (562)
T ss_dssp HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence 56666666666665555543 4
Q ss_pred CCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc--CCcCccCCCCCCEEEcCCCcCcc-cc-ccccccCCC
Q 040301 195 SLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS--LPSNIQTLKVLRVLDLSRNQLSG-DI-STIGALVDL 270 (524)
Q Consensus 195 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~l~~L 270 (524)
.+++|++|++++|.+.+..|..+..+++|+.|++++|++.+. +|..+..+++|+.|++++|.+++ .+ ..+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 455666666666666655566666666666666666666542 23445666666666666666655 33 335556666
Q ss_pred CEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcCCCCCcccccCC
Q 040301 271 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSFKNFSAESFFGN 349 (524)
Q Consensus 271 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~~~~~~~~~~~n 349 (524)
+.|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|.++...+. ...+..+..+++.+|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 6666666666554444332 46666666666666 4555555666666666666666642222 234455555666666
Q ss_pred CCCCC
Q 040301 350 YALCG 354 (524)
Q Consensus 350 ~~lc~ 354 (524)
+..|.
T Consensus 508 ~~~c~ 512 (562)
T 3a79_B 508 PWDCT 512 (562)
T ss_dssp CBCCC
T ss_pred CcCCC
Confidence 65553
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=325.37 Aligned_cols=320 Identities=18% Similarity=0.244 Sum_probs=280.0
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccc-cCCCCCCccccCccccCCCC------CCCCEEEccCCCCCC
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNN-LTTESSLADQWSFLSALTNC------RHLKALSLGSNPLGG 90 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~l------~~L~~L~l~~n~l~~ 90 (524)
..++|++|++++|++.+.+|..|+++++|++|++++|+ +++. .+| ..++++ ++|++|++++|.++
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~-----~lp--~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE-----QLK--DDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH-----HHH--HHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc-----cch--HHHHhhhccccCCCCCEEECCCCcCC-
Confidence 35899999999999999999999999999999999998 7640 233 555554 89999999999999
Q ss_pred CCCh--hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCC-CCeEecccCcccccCCc
Q 040301 91 ILPP--VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQ-LRGLSLKYNNLEGSIPY 167 (524)
Q Consensus 91 ~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~ 167 (524)
.+|. .+..+. +|+.|++++|.+.+.+| .|+++++|+.|++++|+++ .+|..+..+++ |++|++++|.++ .+|.
T Consensus 319 ~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 7787 899998 99999999999998999 8999999999999999999 77888999999 999999999999 7888
Q ss_pred cccCCC--CCCEEEccCCcccccCCcccc-------CCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCC
Q 040301 168 DLCHLK--LMYGIRLTGNKLSGHIPPCLA-------SLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP 238 (524)
Q Consensus 168 ~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 238 (524)
.+..++ +|+.|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+.. +|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB-CC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC-cC
Confidence 887755 899999999999998888888 78899999999999995544556779999999999999984 55
Q ss_pred c-CccCCC-------CCCEEEcCCCcCcccccccc--ccCCCCEEEccCCcccCCCcccccCCCCCCEEeC------CCC
Q 040301 239 S-NIQTLK-------VLRVLDLSRNQLSGDISTIG--ALVDLETLSLASNQFQGPIPESVGSLISLESLDL------SGN 302 (524)
Q Consensus 239 ~-~~~~l~-------~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l------~~N 302 (524)
. .+.... +|+.|++++|.++..+..+. .+++|+.|+|++|++++ +|..+..+++|+.|++ ++|
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 4 343333 99999999999998887776 89999999999999997 8999999999999999 568
Q ss_pred cCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCCCCCcccccCCCCCC
Q 040301 303 NLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALC 353 (524)
Q Consensus 303 ~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~~lc 353 (524)
++.+.+|..+..+++|+.|++++|.+ +.+|.. ....+..+++.+|+..|
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 88889999999999999999999999 556543 33678888888887655
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=318.88 Aligned_cols=308 Identities=21% Similarity=0.234 Sum_probs=221.5
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP 93 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 93 (524)
+|..-+++++.||+++|++++..|..|.++++|++|+|++|+++.+.. ..|.++++|++|+|++|.+.+..|
T Consensus 27 iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 27 IPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE--------DTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp CCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT--------TTTTTCTTCCEEECTTCCCSEECT
T ss_pred CcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh--------hhccCccccCeeeCCCCcccccCh
Confidence 344445689999999999998889999999999999999999987643 788999999999999999998889
Q ss_pred hhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCC
Q 040301 94 PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLK 173 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 173 (524)
..|..+. +|++|++++|.+++..+..|+++++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 99 ~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 99 TALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred hhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 9999998 999999999999987788899999999999999999976555666699999999999999988788888888
Q ss_pred CCC--EEEccCCcccccCCccccCC---------------------------------------------------CCCC
Q 040301 174 LMY--GIRLTGNKLSGHIPPCLASL---------------------------------------------------TSLR 200 (524)
Q Consensus 174 ~L~--~L~l~~n~l~~~~~~~~~~l---------------------------------------------------~~L~ 200 (524)
+|+ .|++++|.+.+..|..+... .+|+
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 888 78888888776555433210 0345
Q ss_pred EEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCc
Q 040301 201 ELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQ 279 (524)
Q Consensus 201 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~ 279 (524)
.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+.+ ..+..+++|+.|++++|.
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 5555555555554555566666666666666665 35555566666666666666655543 345555555555555555
Q ss_pred ccCCCcc-cccCCCCCCEEeCCCCcCCCCC--cccccCCCCCCeEEccCCcCccc
Q 040301 280 FQGPIPE-SVGSLISLESLDLSGNNLSGKI--PKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 280 l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
+.+.+|. .+..+++|+.|++++|.+++.. +..+..+++|+.+++++|.+.+.
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 5533332 2455555555555555555433 44455555555555555555443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=314.83 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=105.8
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
++|+.||+++|++++..|..|.++++|++|+|++|+++++.. ..|.++++|++|||++|.++. +|.. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI--------SVFKFNQELEYLDLSHNKLVK-ISCH--PT 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG--------GGGTTCTTCCEEECCSSCCCE-EECC--CC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh--------HHhhcccCCCEEecCCCceee-cCcc--cc
Confidence 889999999999987777888999999999999998876532 678888999999999998884 4444 56
Q ss_pred cccccEEEeccCcccc-cCCccccCCCCCCeEEcccCcCcccCCccccCCCCC--CeEecccCcc--cccCCccccC
Q 040301 100 SASFQNFYAFNCKLKG-NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQL--RGLSLKYNNL--EGSIPYDLCH 171 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~ 171 (524)
. +|++|++++|.+++ .+|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 90 ~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 90 V-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp C-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred C-CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc
Confidence 5 89999999998886 467888889999999998888874 345555666 7777777766 4444444433
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=319.84 Aligned_cols=303 Identities=23% Similarity=0.232 Sum_probs=277.1
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
+|+.|++++|++++..+..|+++++|++|++++|+++.++ ..+.++++|++|++++|.+.+..|..+..++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp---------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP---------SGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC---------SSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC---------hhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 8999999999999888888999999999999999998654 6788999999999999999988888999998
Q ss_pred ccccEEEeccCcccccCCc-cccCCCCCCeEEcccCcCcccC--CccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 101 ASFQNFYAFNCKLKGNIPQ-EIGNLRGLTLLSLFNNDLNGTI--SPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
+|+.|++++|.+.+.+|. .+.++++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 326 -~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 326 -SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp -TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred -cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 999999999999866655 4899999999999999999776 778999999999999999999888999999999999
Q ss_pred EEccCCcccccCCc-cccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc---CCcCccCCCCCCEEEcC
Q 040301 178 IRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS---LPSNIQTLKVLRVLDLS 253 (524)
Q Consensus 178 L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~ 253 (524)
|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|+.|+++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 99999999877654 488999999999999999988889999999999999999999762 33568899999999999
Q ss_pred CCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcccc
Q 040301 254 RNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332 (524)
Q Consensus 254 ~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 332 (524)
+|.+++.+ ..+..+++|+.|+|++|++++..|..+..+++| .|++++|++++..|..+..+++|+.+++++|++.|.+
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 99999875 778999999999999999999999999999999 9999999999888888999999999999999999877
Q ss_pred CC
Q 040301 333 LV 334 (524)
Q Consensus 333 ~~ 334 (524)
+.
T Consensus 564 ~~ 565 (606)
T 3t6q_A 564 SN 565 (606)
T ss_dssp GG
T ss_pred Cc
Confidence 53
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=314.70 Aligned_cols=140 Identities=24% Similarity=0.260 Sum_probs=94.8
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
|..-+++++.||+++|++++..+..|.++++|++|+|++|+++.++. ..|.++++|++|+|++|.+.+..|.
T Consensus 23 p~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~--------~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 23 PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp CSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT--------TTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc--------ccccCchhCCEEeCcCCcCCccCHh
Confidence 33334678888888888887777778888888888888887776543 5566777777777777777766666
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCccc-CCccccCCCCCCeEecccCcccc
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT-ISPTMGRLKQLRGLSLKYNNLEG 163 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~ 163 (524)
.|..+. +|+.|++++|.+.+..+..|+++++|++|++++|.+.+. .|..++++++|++|++++|.+++
T Consensus 95 ~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 95 AFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred hhcCcc-ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 666666 677777777766655444566666666666666666652 46666666666666666665543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=322.24 Aligned_cols=319 Identities=20% Similarity=0.238 Sum_probs=282.0
Q ss_pred CCCCccEEEccCCccccc-----------------CCcccc--cccCCCEEEccccccCCCCCCccccCccccCCCCCCC
Q 040301 18 PHQIYWVMDLSSNSFSGH-----------------IPNTFG--NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHL 78 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L 78 (524)
..++|++|||++|++++. +|..++ ++++|++|+|++|.+.+ .+| ..+.++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~------~~p--~~l~~l~~L 275 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT------KLP--TFLKALPEM 275 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS------SCC--TTTTTCSSC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc------cCh--HHHhcCCCC
Confidence 458999999999999986 999999 99999999999999865 345 889999999
Q ss_pred CEEEccCCC-CCC-CCChhHhcC------cccccEEEeccCcccccCCc--cccCCCCCCeEEcccCcCcccCCccccCC
Q 040301 79 KALSLGSNP-LGG-ILPPVIGNF------SASFQNFYAFNCKLKGNIPQ--EIGNLRGLTLLSLFNNDLNGTISPTMGRL 148 (524)
Q Consensus 79 ~~L~l~~n~-l~~-~~~~~~~~~------~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 148 (524)
++|++++|+ +++ .+|..+..+ . +|+.|++++|.++ .+|. .|+++++|+.|++++|++.+.+| .+..+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 999999999 998 889998886 6 9999999999999 8888 89999999999999999998888 89999
Q ss_pred CCCCeEecccCcccccCCccccCCCC-CCEEEccCCcccccCCccccCCC--CCCEEEccCCcCCCccChhcc-------
Q 040301 149 KQLRGLSLKYNNLEGSIPYDLCHLKL-MYGIRLTGNKLSGHIPPCLASLT--SLRELHLGSNKLTSSIPSSLW------- 218 (524)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~------- 218 (524)
++|++|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+..+. +|+.|++++|.+.+..|..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 99999999999999 88989999999 999999999998 7788777655 899999999999998888888
Q ss_pred CCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccccc-ccc-------cCCCCEEEccCCcccCCCccccc-
Q 040301 219 SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIST-IGA-------LVDLETLSLASNQFQGPIPESVG- 289 (524)
Q Consensus 219 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~-------l~~L~~L~L~~N~l~~~~~~~~~- 289 (524)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++..+.. +.. +++|+.|+|++|+++ .+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 509 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh
Confidence 788999999999999954444566799999999999999977643 332 238999999999999 6888887
Q ss_pred -CCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc------CCcCccccCC-CCcCCCCCcccccCCCC
Q 040301 290 -SLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS------HNRLEGKILV-KGSFKNFSAESFFGNYA 351 (524)
Q Consensus 290 -~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~------~n~l~~~~~~-~~~~~~~~~~~~~~n~~ 351 (524)
.+++|+.|++++|++++ +|..+..+++|+.|+++ +|.+.+.+|. ...+..+..+++.+|..
T Consensus 510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 99999999999999997 89999999999999994 5667776664 35567788888888865
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=314.77 Aligned_cols=319 Identities=20% Similarity=0.236 Sum_probs=230.3
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
.++|++||+++|++++..|..|.++++|++|++++|+++.+.. ..|.++++|++|++++|.+.+..|..|..
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG--------DAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh--------hhccccccCCEEECCCCccCccCHHHhcc
Confidence 4799999999999998889999999999999999999987653 67899999999999999999888888999
Q ss_pred CcccccEEEeccCcccc-cCCccccCCCCCCeEEcccCc-CcccCCccccCCCCCCeEecccCcccccCCccccC-----
Q 040301 99 FSASFQNFYAFNCKLKG-NIPQEIGNLRGLTLLSLFNND-LNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCH----- 171 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~----- 171 (524)
+. +|++|++++|.+++ ..|..|+++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..
T Consensus 97 l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 97 LS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp CT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 98 99999999999986 467789999999999999998 44444568899999999999999998877776654
Q ss_pred -------------------CCCCCEEEccCCcccccC--Ccc--------------------------------------
Q 040301 172 -------------------LKLMYGIRLTGNKLSGHI--PPC-------------------------------------- 192 (524)
Q Consensus 172 -------------------l~~L~~L~l~~n~l~~~~--~~~-------------------------------------- 192 (524)
+++|+.|++++|++.+.. +..
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 455666666666655421 000
Q ss_pred --------------------------------------------------ccCCCCCCEEEccCCcCCCccChhc-cCCC
Q 040301 193 --------------------------------------------------LASLTSLRELHLGSNKLTSSIPSSL-WSLE 221 (524)
Q Consensus 193 --------------------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~ 221 (524)
+...++|+.|++++|.+. .+|..+ ..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 000123444444444443 334333 4577
Q ss_pred CCCEEEcCCCcCcccCC---cCccCCCCCCEEEcCCCcCcccc---ccccccCCCCEEEccCCcccCCCcccccCCCCCC
Q 040301 222 YILMINLSSNSLNDSLP---SNIQTLKVLRVLDLSRNQLSGDI---STIGALVDLETLSLASNQFQGPIPESVGSLISLE 295 (524)
Q Consensus 222 ~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 295 (524)
+|+.|++++|.+.+..| ..++.+++|++|++++|.+++.+ ..+..+++|+.|++++|+++ .+|..+..+++|+
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~ 413 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc
Confidence 77777777777766442 23566777777777777776554 23666777777777777776 4666666666666
Q ss_pred EEeCCCCcCCCCCccc------------------ccCCCCCCeEEccCCcCccccCCCCcCCCCCcccccCCC
Q 040301 296 SLDLSGNNLSGKIPKS------------------LETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNY 350 (524)
Q Consensus 296 ~L~l~~N~l~~~~~~~------------------~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~ 350 (524)
.|++++|+++. +|.. +..+++|+.|++++|.++ .+|....+..+..+++.+|.
T Consensus 414 ~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 414 FLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp EEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSC
T ss_pred EEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCc
Confidence 66666666652 2221 125778888888888887 34544456667777777764
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=329.42 Aligned_cols=233 Identities=22% Similarity=0.237 Sum_probs=133.1
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC-hhHh
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP-PVIG 97 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 97 (524)
.++|+.|+|++|++++..|..|+++++|++|+|++|.+++.. |....+.++++|++|||++|.+.+..+ ..|.
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV------LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC------STTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc------ccCccccccCCCCEEECCCCcccccccchhHh
Confidence 467888888888888777888888888888888888876521 101336777777888888777776544 5677
Q ss_pred cCcccccEEEeccCcccccCCccccCC--CC------------------------------CCeEEcccCcCcccCCccc
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNL--RG------------------------------LTLLSLFNNDLNGTISPTM 145 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~------------------------------L~~L~l~~n~l~~~~~~~~ 145 (524)
.++ +|++|++++|.+++..+..+..+ ++ |+.|++++|.+++..+..+
T Consensus 146 ~L~-~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 146 KLN-SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp TCS-SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred hCC-CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 776 77777777777765555444333 22 3333333332222111111
Q ss_pred c------------------------------------C--CCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccc
Q 040301 146 G------------------------------------R--LKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 146 ~------------------------------------~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 187 (524)
. . .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence 0 0 1344455555555544444555555555555555555555
Q ss_pred cCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 188 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 55555555555555555555555444555555555555555555555444444555555555555554443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=297.70 Aligned_cols=295 Identities=21% Similarity=0.212 Sum_probs=205.9
Q ss_pred cCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 17 IPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 17 ~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
...++++.|++++|.++...+..|.++++|++|++++|.++.++. ..+.++++|++|++++|.+.+..|..+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--------YAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh--------hhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 345899999999999995555557899999999999999987654 678999999999999999998888889
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCC
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 176 (524)
..+. +|+.|++++|.+....+..|.++++|++|++++|++.+..+..+..+++|++|++++|.+++. .+..+++|+
T Consensus 114 ~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~ 189 (390)
T 3o6n_A 114 QNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF 189 (390)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCS
T ss_pred cCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccc
Confidence 9988 999999999999966666679999999999999999988888899999999999999999854 245566666
Q ss_pred EEEccCCccccc------------------CCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCC
Q 040301 177 GIRLTGNKLSGH------------------IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP 238 (524)
Q Consensus 177 ~L~l~~n~l~~~------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 238 (524)
.|++++|.+.+. .|. ...++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|
T Consensus 190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp EEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred eeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 666666665431 111 1123455555555555432 345555555555665555555555
Q ss_pred cCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCC
Q 040301 239 SNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318 (524)
Q Consensus 239 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 318 (524)
..+..+++|+.|++++|.+++.+..+..+++|+.|++++|++. .+|..+..+++|+.|++++|+++.. + +..+++|
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L 341 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 341 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccC
Confidence 5555555555666655555555444455555555666555555 3444455555555666665555532 2 4445555
Q ss_pred CeEEccCCcCccc
Q 040301 319 KQFNASHNRLEGK 331 (524)
Q Consensus 319 ~~l~l~~n~l~~~ 331 (524)
+.+++++|++.+.
T Consensus 342 ~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 342 KNLTLSHNDWDCN 354 (390)
T ss_dssp SEEECCSSCEEHH
T ss_pred CEEEcCCCCccch
Confidence 5566665555543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=314.98 Aligned_cols=336 Identities=23% Similarity=0.250 Sum_probs=260.2
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCC--Ccc---------------------ccCc--cccCCC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESS--LAD---------------------QWSF--LSALTN 74 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~--~~~---------------------~~~~--~~~~~~ 74 (524)
++|+.||+++|++++..|..|+++++|++|++++|.++.... +.+ .+|. ...+..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 458888888888887777788888888888888887765421 000 0110 014455
Q ss_pred CCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccc--cCCccccCC--CCCCeEEcccCcCcccCCccccCCCC
Q 040301 75 CRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKG--NIPQEIGNL--RGLTLLSLFNNDLNGTISPTMGRLKQ 150 (524)
Q Consensus 75 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~ 150 (524)
+++|++|++++|.+.+..+..|..+. +|+.|++++|.+.. .....|..+ +.|+.|++++|++++..|..+..+++
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCccCCCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 66666666666666666666666665 66666666665422 222223322 46777777778888777888888999
Q ss_pred CCeEecccCcccccCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCC--CccChhccCCCCCCEEE
Q 040301 151 LRGLSLKYNNLEGSIP-YDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLT--SSIPSSLWSLEYILMIN 227 (524)
Q Consensus 151 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~ 227 (524)
|+.|++++|.+++.+| ..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+. +..|..+..+++|+.|+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 9999999999887665 67888999999999999988888888888999999999998876 46788899999999999
Q ss_pred cCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc---------ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEe
Q 040301 228 LSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI---------STIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 298 (524)
Q Consensus 228 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 298 (524)
+++|.+.+..+..+..+++|++|++++|.+++.. ..+..+++|+.|+|++|+++...+..|..+++|+.|+
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 9999999877788999999999999999998753 2378889999999999999965556789999999999
Q ss_pred CCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCC-C-cCCCCCcccccCCCCCCCCC
Q 040301 299 LSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVK-G-SFKNFSAESFFGNYALCGLP 356 (524)
Q Consensus 299 l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~-~-~~~~~~~~~~~~n~~lc~~p 356 (524)
+++|++++..+..+..+++|+.+++++|.+++..+.. + .+..+..+++.+|++.|+.+
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999777777889999999999999998755432 2 46778889999999998755
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=311.67 Aligned_cols=191 Identities=21% Similarity=0.213 Sum_probs=165.1
Q ss_pred CccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCCccChhccCC
Q 040301 142 SPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIP-PCLASLTSLRELHLGSNKLTSSIPSSLWSL 220 (524)
Q Consensus 142 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 220 (524)
+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..+
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred hhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 334444555555555555555 245677788889999999999887766 678999999999999999998889999999
Q ss_pred CCCCEEEcCCCcCcc-cCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEe
Q 040301 221 EYILMINLSSNSLND-SLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 298 (524)
Q Consensus 221 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 298 (524)
++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+++.+ ..+..+++|+.|++++|++++..|..+..+++|+.|+
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 999999999999987 47889999999999999999999876 6789999999999999999998899999999999999
Q ss_pred CCCCcCCCCCcccccCCC-CCCeEEccCCcCccccCC
Q 040301 299 LSGNNLSGKIPKSLETLS-HLKQFNASHNRLEGKILV 334 (524)
Q Consensus 299 l~~N~l~~~~~~~~~~l~-~L~~l~l~~n~l~~~~~~ 334 (524)
+++|+++ .+|..+..++ +|+.+++++|++.|.++.
T Consensus 528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999 6777788887 599999999999987765
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=311.32 Aligned_cols=318 Identities=21% Similarity=0.200 Sum_probs=245.0
Q ss_pred cCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 17 IPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 17 ~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
+..++++.|++++|.++...+..|.++++|++|+|++|.+++++. ..|.++++|++|+|++|.+.+..|..|
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--------YAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh--------HHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 345789999999999996666678899999999999999987653 688899999999999999998888888
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCC
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 176 (524)
..++ +|+.|++++|.+++..+..|+++++|+.|++++|.+++..|..|..+++|+.|++++|.+++.. +..+++|+
T Consensus 120 ~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~ 195 (597)
T 3oja_B 120 QNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLF 195 (597)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCS
T ss_pred cCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhh
Confidence 9988 9999999999999776777899999999999999999888888999999999999999998643 34455555
Q ss_pred EEEccCCccccc------------------CCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCC
Q 040301 177 GIRLTGNKLSGH------------------IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP 238 (524)
Q Consensus 177 ~L~l~~n~l~~~------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 238 (524)
.|++++|.+.+. ++.. ..++|+.|++++|.+++ +..+..+++|+.|+|++|.+.+..|
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred hhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 555555554421 1111 12467777777777764 3667778888888888888887777
Q ss_pred cCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCC
Q 040301 239 SNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318 (524)
Q Consensus 239 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 318 (524)
..+..+++|+.|++++|.+++.+..+..+++|+.|+|++|++. .+|..+..+++|+.|++++|.+++. + +..+++|
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L 347 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 347 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence 7788888888888888888777766677788888888888887 5677777788888888888888744 2 5667788
Q ss_pred CeEEccCCcCccccCCCCcCCCCCcccccCCCCCCCC
Q 040301 319 KQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGL 355 (524)
Q Consensus 319 ~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~~lc~~ 355 (524)
+.|++++|++.|.+.. ..+..+....+.++...|+.
T Consensus 348 ~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 348 KNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp SEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred CEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 8888888888775422 23444444555566666654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=322.08 Aligned_cols=307 Identities=21% Similarity=0.246 Sum_probs=266.7
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccC-CCCCCccccCccccCCCCCCCCEEEccCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLT-TESSLADQWSFLSALTNCRHLKALSLGSNPLGGIL 92 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 92 (524)
+|. -+++++.|||++|++++..|..|.++++|++|+|++|... .++ | ..|.++++|++|+|++|.+.+..
T Consensus 19 vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~------~--~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 19 VPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID------K--EAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC------T--TTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC------H--HHhcCCCCCCEEECCCCcCcccC
Confidence 355 5689999999999999999999999999999999999543 221 2 78999999999999999999999
Q ss_pred ChhHhcCcccccEEEeccCcccccCCcc--ccCCCCCCeEEcccCcCcccCC-ccccCCCCCCeEecccCcccccCCccc
Q 040301 93 PPVIGNFSASFQNFYAFNCKLKGNIPQE--IGNLRGLTLLSLFNNDLNGTIS-PTMGRLKQLRGLSLKYNNLEGSIPYDL 169 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~ 169 (524)
|..|..+. +|++|++++|.+++..|.. |.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+..+
T Consensus 90 p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 90 PDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp TTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred HhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 99999998 9999999999999877665 8999999999999999987755 579999999999999999998888888
Q ss_pred cCC--CCCCEEEccCCcccccCCccccCCCC------CCEEEccCCcCCCccChhccC----------------------
Q 040301 170 CHL--KLMYGIRLTGNKLSGHIPPCLASLTS------LRELHLGSNKLTSSIPSSLWS---------------------- 219 (524)
Q Consensus 170 ~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~~~~---------------------- 219 (524)
..+ ++|+.|++++|.+.+..|..+..+++ |+.|++++|.+.+..+..+..
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 877 89999999999998877776666555 899999999776554433321
Q ss_pred ----------------CCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccC
Q 040301 220 ----------------LEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQG 282 (524)
Q Consensus 220 ----------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~ 282 (524)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.. ..+..+++|+.|+|++|++.+
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 267999999999998888888999999999999999998775 678889999999999999988
Q ss_pred CCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcc
Q 040301 283 PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 283 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 330 (524)
..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 888889999999999999999988777888899999999999998875
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=318.60 Aligned_cols=321 Identities=19% Similarity=0.269 Sum_probs=232.3
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEc-cccccCCCC-------------------------------------
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLL-TWNNLTTES------------------------------------- 60 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l-~~n~l~~~~------------------------------------- 60 (524)
..+++.|+|++|+++|.+|..|+++++|++|+| ++|.+.+..
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 367999999999999999999999999999999 777653331
Q ss_pred ----------------------------------CCccccCccccCCCCCCCCEEEccCCCCCC----------------
Q 040301 61 ----------------------------------SLADQWSFLSALTNCRHLKALSLGSNPLGG---------------- 90 (524)
Q Consensus 61 ----------------------------------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------- 90 (524)
.+.+ +| ..++++++|++|+|++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP--~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS--KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC--GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hh--HHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 1111 44 778888999999999999887
Q ss_pred -CCChhHh--cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCc-Ccc-cCCccccCC-------CCCCeEeccc
Q 040301 91 -ILPPVIG--NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNND-LNG-TISPTMGRL-------KQLRGLSLKY 158 (524)
Q Consensus 91 -~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~ 158 (524)
.+|..++ .+. +|+.|++++|.+.+.+|..|+++++|+.|++++|+ +++ .+|..++.+ ++|+.|++++
T Consensus 479 g~iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 479 QYENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHTTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred ccCChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 2777766 887 89999999998888888888889999999998887 776 566544444 4888888888
Q ss_pred CcccccCCc--cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCC-CCEEEcCCCcCcc
Q 040301 159 NNLEGSIPY--DLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEY-ILMINLSSNSLND 235 (524)
Q Consensus 159 n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~ 235 (524)
|.++ .+|. .+..+++|+.|++++|++. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+.
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 8887 7777 7888888888888888877 566 6777777777777777777 66666777777 777777777766
Q ss_pred cCCcCccCCC-------------------------------CCCEEEcCCCcCcccccc-ccccCCCCEEEccCCcccCC
Q 040301 236 SLPSNIQTLK-------------------------------VLRVLDLSRNQLSGDIST-IGALVDLETLSLASNQFQGP 283 (524)
Q Consensus 236 ~~~~~~~~l~-------------------------------~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~L~~N~l~~~ 283 (524)
.+|..+..++ +|+.|++++|.+...+.. +..+++|+.|+|++|++. .
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-c
Confidence 4554443332 444555555555544422 235678888888888887 4
Q ss_pred CcccccCC--------CCCCEEeCCCCcCCCCCccccc--CCCCCCeEEccCCcCccccCCCCcCCCCCcccccCCC
Q 040301 284 IPESVGSL--------ISLESLDLSGNNLSGKIPKSLE--TLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNY 350 (524)
Q Consensus 284 ~~~~~~~l--------~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~ 350 (524)
+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+++.......+..+..+++.+|.
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 55443322 27888888888888 6677776 7888888888888887732233455666666665543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=316.06 Aligned_cols=318 Identities=21% Similarity=0.265 Sum_probs=232.9
Q ss_pred CCCCccEEEccCCcccc-----------------cCCcccc--cccCCCEEEccccccCCCCCCccccCccccCCCCCCC
Q 040301 18 PHQIYWVMDLSSNSFSG-----------------HIPNTFG--NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHL 78 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~-----------------~~p~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L 78 (524)
..++|+.|+|++|++++ .+|..++ ++++|++|+|++|.+.+ .+| ..+.++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~------~iP--~~l~~L~~L 517 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT------QLP--DFLYDLPEL 517 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC------SCC--GGGGGCSSC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc------cCh--HHHhCCCCC
Confidence 34799999999999998 3888887 99999999999998754 344 788899999
Q ss_pred CEEEccCCC-CCC-CCChhHhcCc------ccccEEEeccCcccccCCc--cccCCCCCCeEEcccCcCcccCCccccCC
Q 040301 79 KALSLGSNP-LGG-ILPPVIGNFS------ASFQNFYAFNCKLKGNIPQ--EIGNLRGLTLLSLFNNDLNGTISPTMGRL 148 (524)
Q Consensus 79 ~~L~l~~n~-l~~-~~~~~~~~~~------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 148 (524)
++|+|++|+ +++ .+|..+..+. ++|+.|++++|.+. .+|. .|+++++|+.|++++|+++ .+| .++.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 999999998 887 7887776652 37999999999998 7887 8999999999999999998 666 88899
Q ss_pred CCCCeEecccCcccccCCccccCCCC-CCEEEccCCcccccCCccccCCCC--CCEEEccCCcCCCccChhc---c--CC
Q 040301 149 KQLRGLSLKYNNLEGSIPYDLCHLKL-MYGIRLTGNKLSGHIPPCLASLTS--LRELHLGSNKLTSSIPSSL---W--SL 220 (524)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l 220 (524)
++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... . .+
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 99999999999998 78888888888 999999999988 67776665543 7788888887776544322 1 23
Q ss_pred CCCCEEEcCCCcCcccCCcCc-cCCCCCCEEEcCCCcCccccccccc--------cCCCCEEEccCCcccCCCccccc--
Q 040301 221 EYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGA--------LVDLETLSLASNQFQGPIPESVG-- 289 (524)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~-- 289 (524)
++|+.|++++|.+.. +|..+ ..+++|+.|++++|.++..+..+.. +++|+.|+|++|+++ .+|..+.
T Consensus 673 ~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 673 INASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred CCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 467777777777763 44433 4666777777777776655532221 226777777777776 5566665
Q ss_pred CCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccC------CcCccccCC-CCcCCCCCcccccCCCC
Q 040301 290 SLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH------NRLEGKILV-KGSFKNFSAESFFGNYA 351 (524)
Q Consensus 290 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~------n~l~~~~~~-~~~~~~~~~~~~~~n~~ 351 (524)
.+++|+.|+|++|++++ +|..+..+++|+.|++++ |.+.+.+|. ...+..+..+++.+|..
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 66777777777777765 566666777777777655 445544443 23455556666666643
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=302.65 Aligned_cols=318 Identities=19% Similarity=0.206 Sum_probs=251.9
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCC-CCChhH
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGG-ILPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~ 96 (524)
..++|++|++++|++++..|..|+++++|++|+|++|+++.++. . .+++|++|++++|.+.+ .+|..+
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~---------~--~l~~L~~L~L~~N~l~~~~~p~~~ 111 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC---------H--PTVNLKHLDLSFNAFDALPICKEF 111 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC---------C--CCCCCSEEECCSSCCSSCCCCGGG
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc---------c--ccCCccEEeccCCccccccchhhh
Confidence 34799999999999998889999999999999999999987642 2 78999999999999997 478999
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCC--CeEEcccCcC--cccCCccccCCC-----------------------
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGL--TLLSLFNNDL--NGTISPTMGRLK----------------------- 149 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~----------------------- 149 (524)
+.+. +|+.|++++|.+.+ ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 112 ~~l~-~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~ 187 (520)
T 2z7x_B 112 GNMS-QLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187 (520)
T ss_dssp GGCT-TCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCT
T ss_pred ccCC-cceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhh
Confidence 9998 99999999999875 456777777 9999999888 556665555532
Q ss_pred ------------------------------------------------------------CCCeEecccCcccccCCccc
Q 040301 150 ------------------------------------------------------------QLRGLSLKYNNLEGSIPYDL 169 (524)
Q Consensus 150 ------------------------------------------------------------~L~~L~L~~n~i~~~~~~~~ 169 (524)
+|++|++++|.+++.+|..+
T Consensus 188 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 267 (520)
T 2z7x_B 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267 (520)
T ss_dssp TCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCC
T ss_pred cccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccch
Confidence 67777777777777777766
Q ss_pred -----cCCCCCCEEEccCCcccccCC-c------------------------c-ccCCCCCCEEEccCCcCCCccChhcc
Q 040301 170 -----CHLKLMYGIRLTGNKLSGHIP-P------------------------C-LASLTSLRELHLGSNKLTSSIPSSLW 218 (524)
Q Consensus 170 -----~~l~~L~~L~l~~n~l~~~~~-~------------------------~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 218 (524)
..+++|+.+++++|.+ .+| . . +..+++|++|++++|.+.+..|..+.
T Consensus 268 ~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 345 (520)
T 2z7x_B 268 FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345 (520)
T ss_dssp CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhc
Confidence 5555555555555544 122 0 0 15678899999999999887888888
Q ss_pred CCCCCCEEEcCCCcCcc--cCCcCccCCCCCCEEEcCCCcCcc-cc-ccccccCCCCEEEccCCcccCCCcccccCCCCC
Q 040301 219 SLEYILMINLSSNSLND--SLPSNIQTLKVLRVLDLSRNQLSG-DI-STIGALVDLETLSLASNQFQGPIPESVGSLISL 294 (524)
Q Consensus 219 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 294 (524)
.+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+ .+ ..+..+++|+.|++++|++++..|..+. ++|
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L 423 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI 423 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC
Confidence 89999999999999886 455678888999999999999887 55 3477788999999999998877776554 689
Q ss_pred CEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcCCCCCcccccCCCCCCCC
Q 040301 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSFKNFSAESFFGNYALCGL 355 (524)
Q Consensus 295 ~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~~~~~~~~~~~n~~lc~~ 355 (524)
+.|++++|+++ .+|..+..+++|+.+++++|.++...+. ...+..+..+++.+|+..|..
T Consensus 424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 99999999988 7787777889999999999988853332 345667778888888877753
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=303.61 Aligned_cols=298 Identities=19% Similarity=0.197 Sum_probs=251.6
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC-CChhH
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI-LPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~ 96 (524)
..++|++|++++|++++..|..|.++++|++|+|++|+++.++. . .+++|++|++++|.+.+. .|..|
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~---------~--~l~~L~~L~Ls~N~l~~l~~p~~~ 142 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC---------C--PMASLRHLDLSFNDFDVLPVCKEF 142 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS---------C--CCTTCSEEECCSSCCSBCCCCGGG
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc---------c--ccccCCEEECCCCCccccCchHhh
Confidence 34799999999999998889999999999999999999987652 2 789999999999999974 56899
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCC--CeEEcccCcC--cccCCccccCCC-----------------------
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGL--TLLSLFNNDL--NGTISPTMGRLK----------------------- 149 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~----------------------- 149 (524)
..+. +|+.|++++|.+... .+..+++| +.|++++|.+ ++..|..+..+.
T Consensus 143 ~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~ 218 (562)
T 3a79_B 143 GNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218 (562)
T ss_dssp GGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEES
T ss_pred cccC-cccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhccc
Confidence 9998 999999999999753 34555555 9999999988 666665554433
Q ss_pred ----------------------------------------------------------CCCeEecccCcccccCCccc--
Q 040301 150 ----------------------------------------------------------QLRGLSLKYNNLEGSIPYDL-- 169 (524)
Q Consensus 150 ----------------------------------------------------------~L~~L~L~~n~i~~~~~~~~-- 169 (524)
+|++|++++|.+++.+|..+
T Consensus 219 ~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp SEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred ccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh
Confidence 67777777787776666554
Q ss_pred ---------------------------------------------------cCCCCCCEEEccCCcccccCCccccCCCC
Q 040301 170 ---------------------------------------------------CHLKLMYGIRLTGNKLSGHIPPCLASLTS 198 (524)
Q Consensus 170 ---------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 198 (524)
..+++|+.|++++|.+.+..|..+..+++
T Consensus 299 ~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 378 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378 (562)
T ss_dssp CCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSS
T ss_pred cccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCC
Confidence 67789999999999999888999999999
Q ss_pred CCEEEccCCcCCCc--cChhccCCCCCCEEEcCCCcCcccCC-cCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEE
Q 040301 199 LRELHLGSNKLTSS--IPSSLWSLEYILMINLSSNSLNDSLP-SNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLS 274 (524)
Q Consensus 199 L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~ 274 (524)
|+.|++++|++++. +|..+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.+++.. ..+. ++|+.|+
T Consensus 379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~ 456 (562)
T 3a79_B 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456 (562)
T ss_dssp CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEE
T ss_pred CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEE
Confidence 99999999999863 35678999999999999999998444 45889999999999999997644 2222 6899999
Q ss_pred ccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCccc-ccCCCCCCeEEccCCcCccccCC
Q 040301 275 LASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS-LETLSHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 275 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~l~l~~n~l~~~~~~ 334 (524)
|++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.+++++|++.|.++.
T Consensus 457 L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9999999 67877779999999999999999 45555 89999999999999999987754
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=303.60 Aligned_cols=332 Identities=23% Similarity=0.223 Sum_probs=261.4
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
|..-+++++.|||++|+|++..|..|.++++|++|+|++|+|+.++. ++|.++++|++|+|++|++++..+.
T Consensus 47 P~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~--------~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT--------TTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh--------hHhcCCCCCCEEEccCCcCCCCCHH
Confidence 43335799999999999998888899999999999999999998764 7899999999999999999988888
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCccc-CCccccCCCCCCeEecccCcccccCCccccCCC
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT-ISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLK 173 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 173 (524)
.|..+. +|++|++++|++++..+..|+++++|++|++++|.+... .|..++.+++|++|++++|.+++..+..+..+.
T Consensus 119 ~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 119 AFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 899998 999999999999988888899999999999999999764 577889999999999999988765443332111
Q ss_pred --------------------------------------------------------------------------------
Q 040301 174 -------------------------------------------------------------------------------- 173 (524)
Q Consensus 174 -------------------------------------------------------------------------------- 173 (524)
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence
Q ss_pred ---------------------------------------------------CCCEEEccCCcccccCCc-----------
Q 040301 174 ---------------------------------------------------LMYGIRLTGNKLSGHIPP----------- 191 (524)
Q Consensus 174 ---------------------------------------------------~L~~L~l~~n~l~~~~~~----------- 191 (524)
.++.|++.+|.+....+.
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 122222222222111000
Q ss_pred --------cccCCCCCCEEEccCCcCCC-------------------------------------------------c-c
Q 040301 192 --------CLASLTSLRELHLGSNKLTS-------------------------------------------------S-I 213 (524)
Q Consensus 192 --------~~~~l~~L~~L~l~~n~l~~-------------------------------------------------~-~ 213 (524)
....+++|+.|+++.|.+.. . .
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 01124566666666665431 0 1
Q ss_pred ChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc--ccccccccCCCCEEEccCCcccCCCcccccCC
Q 040301 214 PSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG--DISTIGALVDLETLSLASNQFQGPIPESVGSL 291 (524)
Q Consensus 214 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 291 (524)
...+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+.. .+..+..+++|+.|+|++|++++..|..|..+
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 1234556677777888888877777888888999999999987543 23678889999999999999999889999999
Q ss_pred CCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCC-CcC-CCCCcccccCCCCCCCC
Q 040301 292 ISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVK-GSF-KNFSAESFFGNYALCGL 355 (524)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~-~~~-~~~~~~~~~~n~~lc~~ 355 (524)
++|+.|+|++|++++..|..+..+++|+.|++++|.+++..+.. ..+ ..+..+++.+|++.|.+
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999888889999999999999999999876653 233 56788899999998863
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=303.99 Aligned_cols=187 Identities=25% Similarity=0.266 Sum_probs=156.0
Q ss_pred cCCCCCCEEEccCCcccccC--CccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCC-cCccCCCC
Q 040301 170 CHLKLMYGIRLTGNKLSGHI--PPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP-SNIQTLKV 246 (524)
Q Consensus 170 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 246 (524)
..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+.. ..+..+++|+.|++++|.+.+..+ ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-EEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc-ccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 45678889999999887553 667888999999999999988544 448889999999999999887655 56888999
Q ss_pred CCEEEcCCCcCcccc-ccccccCCCCEEEccCCccc-CCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 247 LRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQ-GPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 247 L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
|++|++++|.+.+.. ..+..+++|+.|++++|++. +.+|..+..+++|+.|++++|++++..|..+..+++|+.|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 999999999988755 67788999999999999987 5688889999999999999999998888899999999999999
Q ss_pred CCcCccccCC-CCcCCCCCcccccCCCCCCCCCC
Q 040301 325 HNRLEGKILV-KGSFKNFSAESFFGNYALCGLPK 357 (524)
Q Consensus 325 ~n~l~~~~~~-~~~~~~~~~~~~~~n~~lc~~p~ 357 (524)
+|.+++..+. ...+..+..+++.+|+..|..|.
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999886654 35567788888999988877553
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=306.57 Aligned_cols=305 Identities=21% Similarity=0.278 Sum_probs=217.6
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP 93 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 93 (524)
+|..-+++++.||+++|++++..+..|.++++|++|+|++|.++.+.. ..+.++++|++|+|++|.+....+
T Consensus 19 ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 19 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP--------ELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT--------THHHHCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH--------HHHhcccCcCEEECCCCccCccCh
Confidence 343334789999999999997777789999999999999999887643 678888999999999999987666
Q ss_pred hhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCcccc--C
Q 040301 94 PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC--H 171 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~ 171 (524)
..|..+. +|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .
T Consensus 91 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 6788887 999999999999877778899999999999999999888888888899999999999988876665543 4
Q ss_pred CCCCCEEEccCCcccccCCccccCC---------------------------CCCCEEEccCCcCCCccChhccCCCC--
Q 040301 172 LKLMYGIRLTGNKLSGHIPPCLASL---------------------------TSLRELHLGSNKLTSSIPSSLWSLEY-- 222 (524)
Q Consensus 172 l~~L~~L~l~~n~l~~~~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~-- 222 (524)
+++|+.|++++|.+.+..|..+..+ ++|+.|++++|.+.+..+..+..++.
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 5788888888888876666555433 44566666666666555566655543
Q ss_pred CCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccC-----CCcc----cccCCC
Q 040301 223 ILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQG-----PIPE----SVGSLI 292 (524)
Q Consensus 223 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~-----~~~~----~~~~l~ 292 (524)
|+.|++++|.+.+..+..+..+++|++|++++|.+.+.. ..+..+++|+.|++++|...+ .+|. .+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 777777777766666666666777777777777666544 345555555555555543322 1111 344555
Q ss_pred CCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCc
Q 040301 293 SLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNR 327 (524)
Q Consensus 293 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~ 327 (524)
+|+.|++++|.+++..+..+..+++|+.+++++|.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 55555555555555555555555555555555544
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=276.59 Aligned_cols=303 Identities=22% Similarity=0.312 Sum_probs=259.2
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++|+.|++++|+++ .+| .+..+++|++|++++|+++++ ..+.++++|++|++++|.+... + .+.
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~----------~~~~~l~~L~~L~L~~n~i~~~-~-~~~ 107 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI----------SPLSNLVKLTNLYIGTNKITDI-S-ALQ 107 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCC-G-GGT
T ss_pred hcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc----------hhhhcCCcCCEEEccCCcccCc-h-HHc
Confidence 4579999999999998 455 489999999999999999875 3388899999999999999864 3 588
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.+. +|++|++++|.+.+..+ +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 108 ~l~-~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 108 NLT-NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TCT-TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred CCC-cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 887 99999999999985433 889999999999999766444 458999999999999999985443 889999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.. . +..+++|++|++++|.+
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCC
T ss_pred EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCcc
Confidence 9999999985433 8889999999999999985543 888999999999999998643 3 88999999999999999
Q ss_pred ccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCc
Q 040301 258 SGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGS 337 (524)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~ 337 (524)
++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+..+..+++|+.+++++|++++..+ ...
T Consensus 256 ~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~ 331 (347)
T 4fmz_A 256 SDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LAS 331 (347)
T ss_dssp CCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGG
T ss_pred CCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhh
Confidence 875 5688899999999999999864 458899999999999999998888999999999999999999988766 456
Q ss_pred CCCCCcccccCCC
Q 040301 338 FKNFSAESFFGNY 350 (524)
Q Consensus 338 ~~~~~~~~~~~n~ 350 (524)
+..+..+++.+|+
T Consensus 332 l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 332 LSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEESSSCC-
T ss_pred hhccceeehhhhc
Confidence 7777778877774
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=280.15 Aligned_cols=253 Identities=32% Similarity=0.519 Sum_probs=145.3
Q ss_pred ccEEEeccCcccc--cCCccccCCCCCCeEEccc-CcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 103 FQNFYAFNCKLKG--NIPQEIGNLRGLTLLSLFN-NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 103 L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
++.|++++|.+.+ .+|..|.++++|++|++++ |.+.+..|..++++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 4444444444443 3444444444444444442 444444444444444455555555544444444444555555555
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCC-CCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLE-YILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
+++|.+.+..|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|..+..++ |+.|++++|.++
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 555555444444555555555555555555444455555554 555555555555555555555554 555555555555
Q ss_pred ccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCc
Q 040301 259 GDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGS 337 (524)
Q Consensus 259 ~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~ 337 (524)
+.. ..+..+++|+.|+|++|++++..|. +..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+.
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 289 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence 433 4455566666666666666644443 56667777777777777777777777777777777777777777776666
Q ss_pred CCCCCcccccCCCCCCCCCC
Q 040301 338 FKNFSAESFFGNYALCGLPK 357 (524)
Q Consensus 338 ~~~~~~~~~~~n~~lc~~p~ 357 (524)
+..+..+++.+|+.+||.|.
T Consensus 290 l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTS
T ss_pred ccccChHHhcCCCCccCCCC
Confidence 77777778888888888653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=276.08 Aligned_cols=283 Identities=26% Similarity=0.400 Sum_probs=246.7
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++|++|++++|++++. +. |.++++|++|++++|.++.+ ..+.++++|++|++++|.+.+..+ +.
T Consensus 64 ~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~----------~~~~~l~~L~~L~l~~n~i~~~~~--~~ 129 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI----------SALQNLTNLRELYLNEDNISDISP--LA 129 (347)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC----------GGGTTCTTCSEEECTTSCCCCCGG--GT
T ss_pred hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc----------hHHcCCCcCCEEECcCCcccCchh--hc
Confidence 458999999999999954 44 99999999999999999875 568899999999999999996544 77
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.+. +|+.|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.
T Consensus 130 ~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 203 (347)
T 4fmz_A 130 NLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203 (347)
T ss_dssp TCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred cCC-ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccce
Confidence 787 99999999997664444 48999999999999999985543 8899999999999999985433 889999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred eecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCcc
Confidence 9999999985544 8889999999999999985533 88999999999999999863 5688999999999999999
Q ss_pred ccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCc
Q 040301 258 SGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329 (524)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~ 329 (524)
++. ..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++++..| +..+++|+.+++++|+++
T Consensus 278 ~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 278 SDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 876 568889999999999999998888999999999999999999997666 889999999999999875
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=300.72 Aligned_cols=320 Identities=24% Similarity=0.254 Sum_probs=213.9
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC-CChhHh
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI-LPPVIG 97 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~ 97 (524)
.++|++|++++|++++..|..|.++++|++|+|++|++++.+. ..++++++|++|++++|.+.+. .|..+.
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS--------SWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH--------HHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH--------HHhccCCCCcEEECCCCcccccchhhhhh
Confidence 4688888888888887777888888888888888888876542 4467777777777777777753 455666
Q ss_pred cCcccccEEEeccCcc-cccCCccccCCCCCCeEEcccCcCcccCCccccC------------------------CCCCC
Q 040301 98 NFSASFQNFYAFNCKL-KGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGR------------------------LKQLR 152 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------l~~L~ 152 (524)
.+. +|++|++++|.+ ....+..|.++++|++|++++|++.+..|..+.. +++|+
T Consensus 121 ~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 121 NLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199 (549)
T ss_dssp TCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred ccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhccccc
Confidence 666 777777777763 3333356667777777777777776655555433 44555
Q ss_pred eEecccCccccc--------------------------------------------------------------------
Q 040301 153 GLSLKYNNLEGS-------------------------------------------------------------------- 164 (524)
Q Consensus 153 ~L~L~~n~i~~~-------------------------------------------------------------------- 164 (524)
+|++++|.+++.
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 556666555431
Q ss_pred ---------------------------------------------CCccc-cCCCCCCEEEccCCcccccCC---ccccC
Q 040301 165 ---------------------------------------------IPYDL-CHLKLMYGIRLTGNKLSGHIP---PCLAS 195 (524)
Q Consensus 165 ---------------------------------------------~~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~ 195 (524)
+|..+ ..+++|+.|++++|++.+..| ..+..
T Consensus 280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 359 (549)
T 2z81_A 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359 (549)
T ss_dssp CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred hcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence 11111 235556666666666654432 22455
Q ss_pred CCCCCEEEccCCcCCCccC--hhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEE
Q 040301 196 LTSLRELHLGSNKLTSSIP--SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETL 273 (524)
Q Consensus 196 l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 273 (524)
+++|+.|++++|.+++..+ ..+..+++|+.|++++|++. .+|..+..+++|++|++++|.+++.+..+ .++|+.|
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L 436 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVL 436 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEE
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCceEE
Confidence 6666666666666654321 34566666777777777666 45666666667777777777666544322 2466777
Q ss_pred EccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcCCCCCcccccCCCCC
Q 040301 274 SLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSFKNFSAESFFGNYAL 352 (524)
Q Consensus 274 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~~~~~~~~~~~n~~l 352 (524)
++++|++++. +..+++|+.|++++|+++ .+|. ...+++|+.|++++|.+++..+. ...+..+..+++.+|+..
T Consensus 437 ~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 437 DVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp ECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred ECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 7777766643 247889999999999998 5665 46789999999999999886664 356777888899999988
Q ss_pred CCCC
Q 040301 353 CGLP 356 (524)
Q Consensus 353 c~~p 356 (524)
|..|
T Consensus 511 ~~~~ 514 (549)
T 2z81_A 511 CSCP 514 (549)
T ss_dssp CCHH
T ss_pred CCCc
Confidence 8654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=273.58 Aligned_cols=290 Identities=21% Similarity=0.251 Sum_probs=219.4
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+++.++++++.++ .+|..+. ++|++|++++|+++.++. ..+.++++|++|++++|.+.+..|..|..+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKD--------GDFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeCh--------hhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 36888888888887 6676653 578888888888887653 567888888888888888887778888888
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc--cCCccccCCCCCCE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG--SIPYDLCHLKLMYG 177 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~ 177 (524)
. +|+.|++++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|+.
T Consensus 100 ~-~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 100 V-KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp T-TCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred C-CCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 7 8888888888887 4554443 688888888888887777778888888888888888853 56677888888888
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|.+.. +|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 176 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 176 IRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp EECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred EECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 8888888773 444433 6788888888888766677788888888888888888776666777888888888888888
Q ss_pred ccccccccccCCCCEEEccCCcccCCCcccccC------CCCCCEEeCCCCcCCC--CCcccccCCCCCCeEEccCCc
Q 040301 258 SGDISTIGALVDLETLSLASNQFQGPIPESVGS------LISLESLDLSGNNLSG--KIPKSLETLSHLKQFNASHNR 327 (524)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~l~l~~n~ 327 (524)
+..+..+..+++|+.|++++|++++..+..|.. .+.++.|++++|.+.. ..|..+..+++++.+++++|+
T Consensus 253 ~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 253 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 877777777788888888888887665555533 3667788888887753 455677777778888877763
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=281.41 Aligned_cols=252 Identities=27% Similarity=0.460 Sum_probs=218.8
Q ss_pred CCCCEEEccCCCCCC--CCChhHhcCcccccEEEecc-CcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCC
Q 040301 76 RHLKALSLGSNPLGG--ILPPVIGNFSASFQNFYAFN-CKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLR 152 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 152 (524)
.++++|+|++|.+.+ .+|..+..+. +|+.|++++ |.+.+.+|..|+++++|++|++++|.+++..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467888888888887 7788888887 888888884 788888888888888888888888888888888888888888
Q ss_pred eEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCC-CCCEEEccCCcCCCccChhccCCCCCCEEEcCCC
Q 040301 153 GLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLT-SLRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231 (524)
Q Consensus 153 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 231 (524)
+|++++|.+++.+|..+..+++|++|++++|++.+.+|..+..++ +|+.|++++|.+.+.+|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888888888888888888888888888888888888888888887 888999988888888888888887 999999999
Q ss_pred cCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCccc
Q 040301 232 SLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS 311 (524)
Q Consensus 232 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 311 (524)
.+.+..|..+..+++|+.|++++|.+++.+..+..+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|..
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 98888888888999999999999999877766888899999999999999899999999999999999999999888886
Q ss_pred ccCCCCCCeEEccCCcCcc
Q 040301 312 LETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 312 ~~~l~~L~~l~l~~n~l~~ 330 (524)
..+++|+.+++++|+.-+
T Consensus 288 -~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEE
T ss_pred -ccccccChHHhcCCCCcc
Confidence 788999999999998433
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=274.53 Aligned_cols=288 Identities=20% Similarity=0.259 Sum_probs=228.5
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
+++.+++++++++ .+|..+. ++|++|++++|.++.+.. ..+.++++|++|++++|.+.+..|..|..+.
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRK--------DDFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECT--------TTTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCH--------hHhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 6888999998888 6777663 688999999998877643 5788888899999999998888888888887
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc--cCCccccCCCCCCEE
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG--SIPYDLCHLKLMYGI 178 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L 178 (524)
+|+.|++++|.+. .+|..+. ++|++|++++|++....+..+..+++|+.|++++|.++. ..+..+..+ +|+.|
T Consensus 103 -~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 103 -KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp -TCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred -CCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 8899999988887 4555444 788899999888887777778888889999998888863 566777777 88888
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
++++|++++ +|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 178 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 178 RISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp BCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 888888874 454443 68888888888888777778888888888888888888777777888888888888888888
Q ss_pred cccccccccCCCCEEEccCCcccCCCcccccC------CCCCCEEeCCCCcCC--CCCcccccCCCCCCeEEccCCc
Q 040301 259 GDISTIGALVDLETLSLASNQFQGPIPESVGS------LISLESLDLSGNNLS--GKIPKSLETLSHLKQFNASHNR 327 (524)
Q Consensus 259 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~l~l~~n~ 327 (524)
..+..+..+++|+.|++++|++++..+..|.. .++|+.|++++|.+. +..|..+..+++|+.+++++|.
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 77777888888888888888888766655544 356888888888876 5667778888888888888774
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=281.50 Aligned_cols=298 Identities=25% Similarity=0.330 Sum_probs=169.3
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++|++||+++|++++..| |.++++|++|++++|.++.. ..+.++++|++|++++|.+.+..+ +.
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~L~~n~l~~~~~--~~ 131 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI----------TPLANLTNLTGLTLFNNQITDIDP--LK 131 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCCGG--GT
T ss_pred hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC----------hhhcCCCCCCEEECCCCCCCCChH--Hc
Confidence 34788888888888885433 78888888888888887765 237778888888888888876533 67
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.++ +|++|++++|.+.+. + .+.++++|+.|+++ |.+.+. ..+.++++|++|++++|.+++. ..+..+++|+.
T Consensus 132 ~l~-~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 203 (466)
T 1o6v_A 132 NLT-NLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLES 203 (466)
T ss_dssp TCT-TCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred CCC-CCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCE
Confidence 776 888888888887642 2 35555555555553 223222 1255566666666666665532 23555566666
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277 (466)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC
T ss_pred EEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCcc
Confidence 6666666554333 44455555555555555432 234555555555555555554322 45555555555555555
Q ss_pred ccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCc
Q 040301 258 SGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGS 337 (524)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~ 337 (524)
++.+. +..+++|+.|++++|++.+..+ +..+++|+.|++++|++++..| +..+++|+.|++++|.+++. +....
T Consensus 278 ~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~ 351 (466)
T 1o6v_A 278 SNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLAN 351 (466)
T ss_dssp CCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTT
T ss_pred Ccccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhcc
Confidence 54433 4455555555555555553322 4455555555555555554333 44455555555555555443 22223
Q ss_pred CCCCCcccccCC
Q 040301 338 FKNFSAESFFGN 349 (524)
Q Consensus 338 ~~~~~~~~~~~n 349 (524)
+..+..+++.+|
T Consensus 352 l~~L~~L~l~~n 363 (466)
T 1o6v_A 352 LTNINWLSAGHN 363 (466)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEeCCCC
Confidence 334444444444
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-32 Score=264.79 Aligned_cols=273 Identities=22% Similarity=0.264 Sum_probs=236.7
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
|..-+++++.|++++|++++..+..|.++++|++|++++|+++.+.. ..+.++++|++|++++|.++. +|.
T Consensus 47 p~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~-l~~ 117 (330)
T 1xku_A 47 PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP--------GAFAPLVKLERLYLSKNQLKE-LPE 117 (330)
T ss_dssp CCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEECCSSCCSB-CCS
T ss_pred CccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH--------HHhcCCCCCCEEECCCCcCCc-cCh
Confidence 44345799999999999998888889999999999999999987632 788999999999999999994 454
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcc--cCCccccCCCCCCeEecccCcccccCCccccCC
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG--TISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHL 172 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 172 (524)
.+. . +|++|++++|.+.+..+..|.++++|+.|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+.
T Consensus 118 ~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~-- 191 (330)
T 1xku_A 118 KMP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP-- 191 (330)
T ss_dssp SCC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--
T ss_pred hhc--c-cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--
Confidence 433 3 89999999999998888889999999999999999964 67788999999999999999998 4565554
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEc
Q 040301 173 KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252 (524)
Q Consensus 173 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 252 (524)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 89999999999999888899999999999999999999777778999999999999999998 68888999999999999
Q ss_pred CCCcCcccc-cccc------ccCCCCEEEccCCcccC--CCcccccCCCCCCEEeCCCCc
Q 040301 253 SRNQLSGDI-STIG------ALVDLETLSLASNQFQG--PIPESVGSLISLESLDLSGNN 303 (524)
Q Consensus 253 ~~n~l~~~~-~~~~------~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 303 (524)
++|.+++.+ ..+. ..+.|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999876 3443 24789999999999864 567889999999999999985
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=275.33 Aligned_cols=292 Identities=20% Similarity=0.209 Sum_probs=208.4
Q ss_pred cccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccc
Q 040301 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI 121 (524)
Q Consensus 42 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 121 (524)
.+.++++|++++|.++.++. ..+.++++|++|++++|.+.+..+..|..+. +|+.|++++|.+.+..|..|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~--------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA--------ALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESCEESEECT--------HHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEecCCchhhCCh--------hHhcccccCcEEECCCCcccccChhhccCCC-CcCEEECCCCCCCcCCHHHh
Confidence 46899999999999998764 5578899999999999999988888999998 99999999999999889999
Q ss_pred cCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040301 122 GNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 201 (524)
+++++|++|++++|++....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.. +..+++|+.
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~ 190 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 190 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSE
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccce
Confidence 99999999999999999766667899999999999999999888888999999999999999998642 445666666
Q ss_pred EEccCCcCCCc------------------cChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-c
Q 040301 202 LHLGSNKLTSS------------------IPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-S 262 (524)
Q Consensus 202 L~l~~n~l~~~------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~ 262 (524)
|++++|.+.+. ++. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.. .
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 66666655421 111 1123455555555555432 34555566666666666655543 4
Q ss_pred cccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCCCCC
Q 040301 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342 (524)
Q Consensus 263 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~ 342 (524)
.+..+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++... ...+..+.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~ 342 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLK 342 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCS
T ss_pred HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCC
Confidence 45555666666666666553 3444455566666666666655 34444555566666666666655421 23344555
Q ss_pred cccccCCCCCC
Q 040301 343 AESFFGNYALC 353 (524)
Q Consensus 343 ~~~~~~n~~lc 353 (524)
.+++.+|+.-|
T Consensus 343 ~L~l~~N~~~~ 353 (390)
T 3o6n_A 343 NLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCEEH
T ss_pred EEEcCCCCccc
Confidence 55555555444
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=276.28 Aligned_cols=298 Identities=25% Similarity=0.358 Sum_probs=256.6
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
.++++.|++++|.++ .+| .+..+++|++|++++|.++.++ . +.++++|++|++++|.+.+..+ +..
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~---------~-~~~l~~L~~L~l~~n~l~~~~~--~~~ 110 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDIT---------P-LKNLTKLVDILMNNNQIADITP--LAN 110 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG---------G-GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCch---------h-hhccccCCEEECCCCccccChh--hcC
Confidence 479999999999998 566 4899999999999999998752 3 8899999999999999997655 888
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
+. +|+.|++++|.+.+..+ +.++++|++|++++|.+.+. ..+..+++|++|+++ |.+.+.. .+..+++|+.|
T Consensus 111 l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L 182 (466)
T 1o6v_A 111 LT-NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERL 182 (466)
T ss_dssp CT-TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEE
T ss_pred CC-CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEE
Confidence 87 99999999999986543 89999999999999999854 358999999999997 4555333 38899999999
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 183 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 183 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 9999998754 348889999999999999986654 77899999999999999853 46889999999999999998
Q ss_pred cccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCcC
Q 040301 259 GDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSF 338 (524)
Q Consensus 259 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~ 338 (524)
+.+. +..+++|+.|++++|++.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+++..+ ...+
T Consensus 257 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l 330 (466)
T 1o6v_A 257 NLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSL 330 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGC
T ss_pred cchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccC
Confidence 7665 8889999999999999996544 8899999999999999996544 7899999999999999988665 4567
Q ss_pred CCCCcccccCCC
Q 040301 339 KNFSAESFFGNY 350 (524)
Q Consensus 339 ~~~~~~~~~~n~ 350 (524)
..+..+++.+|.
T Consensus 331 ~~L~~L~l~~n~ 342 (466)
T 1o6v_A 331 TKLQRLFFYNNK 342 (466)
T ss_dssp TTCCEEECCSSC
T ss_pred ccCCEeECCCCc
Confidence 778888888774
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=265.36 Aligned_cols=272 Identities=23% Similarity=0.297 Sum_probs=236.2
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
|..-.++++.|++++|++++..|..|.++++|++|++++|+++.+.. ..+.++++|++|++++|.+.. +|.
T Consensus 49 p~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~-l~~ 119 (332)
T 2ft3_A 49 PKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE--------KAFSPLRKLQKLYISKNHLVE-IPP 119 (332)
T ss_dssp CSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--------GGSTTCTTCCEEECCSSCCCS-CCS
T ss_pred CCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--------hHhhCcCCCCEEECCCCcCCc-cCc
Confidence 44345799999999999998888899999999999999999987632 788999999999999999994 444
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCc--ccCCccccCCCCCCeEecccCcccccCCccccCC
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN--GTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHL 172 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 172 (524)
.+. . +|++|++++|.+....+..|.++++|+.|++++|.+. +..+..+..+ +|++|++++|.+++ +|..+.
T Consensus 120 ~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~-- 192 (332)
T 2ft3_A 120 NLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP-- 192 (332)
T ss_dssp SCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--
T ss_pred ccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--
Confidence 443 3 8999999999999877788999999999999999996 3677888888 99999999999985 665554
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEc
Q 040301 173 KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252 (524)
Q Consensus 173 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 252 (524)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 78999999999999888889999999999999999999887788999999999999999998 68888999999999999
Q ss_pred CCCcCcccc-ccccc------cCCCCEEEccCCccc--CCCcccccCCCCCCEEeCCCCc
Q 040301 253 SRNQLSGDI-STIGA------LVDLETLSLASNQFQ--GPIPESVGSLISLESLDLSGNN 303 (524)
Q Consensus 253 ~~n~l~~~~-~~~~~------l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~ 303 (524)
++|.+++.+ ..+.. .+.|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999876 44433 467999999999987 6778889999999999999985
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=287.18 Aligned_cols=307 Identities=22% Similarity=0.237 Sum_probs=246.8
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
.++|++|||++|+|++..|..|.++++|++|+|++|+++.++. ..|.++++|++|+|++|++++..+..|+.
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~--------~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--------GAFSGLSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG--------GGGTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH--------HHhcCCCCCCEEECCCCcCCCCChhhhhc
Confidence 4789999999999998888899999999999999999988754 67899999999999999999887778888
Q ss_pred CcccccEEEeccCcccc-cCCccccCCCCCCeEEcccCcCcccCCccccCC-----------------------------
Q 040301 99 FSASFQNFYAFNCKLKG-NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRL----------------------------- 148 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----------------------------- 148 (524)
+. +|++|++++|.+.+ ..|..++.+++|++|++++|++.+..+..+..+
T Consensus 147 L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~ 225 (635)
T 4g8a_A 147 LK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 225 (635)
T ss_dssp CT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred Cc-ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchh
Confidence 88 99999999999875 467888999999999999998865543332111
Q ss_pred --------------------------------------------------------------------------------
Q 040301 149 -------------------------------------------------------------------------------- 148 (524)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (524)
T Consensus 226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 305 (635)
T 4g8a_A 226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL 305 (635)
T ss_dssp EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence
Q ss_pred ----------------------CCCCeEecccCcccccCCc-------------------cccCCCCCCEEEccCCcccc
Q 040301 149 ----------------------KQLRGLSLKYNNLEGSIPY-------------------DLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 149 ----------------------~~L~~L~L~~n~i~~~~~~-------------------~~~~l~~L~~L~l~~n~l~~ 187 (524)
.+|+.|++.+|.+....+. ....+++|+.|++++|.+..
T Consensus 306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred cccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence 1222333333332211110 11234566666666665431
Q ss_pred -------------------------------------------------c-CCccccCCCCCCEEEccCCcCCCccChhc
Q 040301 188 -------------------------------------------------H-IPPCLASLTSLRELHLGSNKLTSSIPSSL 217 (524)
Q Consensus 188 -------------------------------------------------~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 217 (524)
. .+..+..+.+++.++++.|.+.+..+..+
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 1 11234566788888999999988888889
Q ss_pred cCCCCCCEEEcCCCcC-cccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCC
Q 040301 218 WSLEYILMINLSSNSL-NDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLE 295 (524)
Q Consensus 218 ~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 295 (524)
..++.|+.|++++|.+ .+..|..+..+++|+.|++++|++++.+ ..+..+++|+.|+|++|++++..|..|..+++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 9999999999999975 4457888999999999999999999876 7789999999999999999998888999999999
Q ss_pred EEeCCCCcCCCCCcccccCC-CCCCeEEccCCcCccccCC
Q 040301 296 SLDLSGNNLSGKIPKSLETL-SHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 296 ~L~l~~N~l~~~~~~~~~~l-~~L~~l~l~~n~l~~~~~~ 334 (524)
.|++++|++++..|..+..+ ++|+.|++++|++.|.+..
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999999988 6899999999999998753
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-32 Score=285.01 Aligned_cols=293 Identities=20% Similarity=0.214 Sum_probs=247.2
Q ss_pred cccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccc
Q 040301 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI 121 (524)
Q Consensus 42 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 121 (524)
.+.+++.|++++|.++.++. ..+.++++|++|+|++|.+.+..|..|..+. +|+.|++++|.+++..|..|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPA--------ALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESSCEESEECT--------HHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEeeCCCCCCcCH--------HHHccCCCCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHH
Confidence 46789999999999988764 5678899999999999999998888999998 99999999999999889999
Q ss_pred cCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040301 122 GNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 201 (524)
+++++|+.|+|++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.. +..+++|+.
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~ 196 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 196 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSE
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhh
Confidence 99999999999999999777777899999999999999999888889999999999999999998653 334455555
Q ss_pred EEccCCcCCC------------------ccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-c
Q 040301 202 LHLGSNKLTS------------------SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-S 262 (524)
Q Consensus 202 L~l~~n~l~~------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~ 262 (524)
|++++|.+.+ .++.. ..++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+.+ .
T Consensus 197 L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp EECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred hhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 5555554432 11111 13578888888888875 367888999999999999998875 6
Q ss_pred cccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCCCCC
Q 040301 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342 (524)
Q Consensus 263 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~ 342 (524)
.+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++.. ...+..+.
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLK 348 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCS
T ss_pred HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCC
Confidence 78899999999999999985 5777788999999999999998 67888888999999999999987643 44577888
Q ss_pred cccccCCCCCCC
Q 040301 343 AESFFGNYALCG 354 (524)
Q Consensus 343 ~~~~~~n~~lc~ 354 (524)
.+++.+|+.-|.
T Consensus 349 ~L~l~~N~~~~~ 360 (597)
T 3oja_B 349 NLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSCEEHH
T ss_pred EEEeeCCCCCCh
Confidence 899999987774
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.1e-31 Score=267.48 Aligned_cols=295 Identities=20% Similarity=0.178 Sum_probs=219.6
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++|+.||+++|++++. | .|+++++|++|++++|+++++ .++++++|++|++++|.+++. + +.
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-----------~~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-----------DLSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-----------CCTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-----------ccccCCCCCEEECcCCCCcee-e--cC
Confidence 357899999999999954 6 689999999999999998874 267788999999999999875 3 77
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.+. +|+.|++++|.+++. | ++++++|++|++++|++++. .++.+++|++|++++|...+.+ .+..+++|+.
T Consensus 104 ~l~-~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 104 PLT-KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TCT-TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCC-cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 777 899999999998863 4 88899999999999999864 3778888999999888654444 4778888899
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|++++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|++.+ +| +..+++|+.|++++|.+
T Consensus 175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 9999888885 34 77788888888888888754 37778888888888888886 55 77888888888888888
Q ss_pred cccc-ccccccC-------CCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcc--------cccCCCCCCeE
Q 040301 258 SGDI-STIGALV-------DLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPK--------SLETLSHLKQF 321 (524)
Q Consensus 258 ~~~~-~~~~~l~-------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--------~~~~l~~L~~l 321 (524)
++.+ ..+..+. +|+.|++++|++.+.+| +..+++|+.|++++|...+.+|. .+..+++|+.+
T Consensus 246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 8765 2222222 34445555555444444 35667777777777776555543 24455677777
Q ss_pred EccCCcCccccCCCCcCCCCCcccccCCC
Q 040301 322 NASHNRLEGKILVKGSFKNFSAESFFGNY 350 (524)
Q Consensus 322 ~l~~n~l~~~~~~~~~~~~~~~~~~~~n~ 350 (524)
++++|.+++. + ...+..+..+++.+|.
T Consensus 324 ~L~~N~l~~l-~-l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 324 YLNNTELTEL-D-VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp ECTTCCCSCC-C-CTTCTTCSEEECCSSC
T ss_pred ECCCCccccc-c-cccCCcCcEEECCCCC
Confidence 7777777763 2 3445556666666654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=261.01 Aligned_cols=275 Identities=18% Similarity=0.138 Sum_probs=231.2
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++|+.|++++|++++. | ++++++|++|++++|+++++ .++++++|++|++++|.+++. | +.
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-----------~~~~l~~L~~L~L~~N~l~~l-~--~~ 124 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-----------DVTPLTKLTYLNCDTNKLTKL-D--VS 124 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-----------CCTTCTTCCEEECCSSCCSCC-C--CT
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-----------ecCCCCcCCEEECCCCcCCee-c--CC
Confidence 458999999999999964 4 89999999999999999874 267889999999999999974 4 77
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.++ +|+.|++++|.+++. + ++++++|+.|++++|+..+.. .+..+++|++|++++|.+++ +| +..+++|+.
T Consensus 125 ~l~-~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~ 195 (457)
T 3bz5_A 125 QNP-LLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNR 195 (457)
T ss_dssp TCT-TCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCE
T ss_pred CCC-cCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCE
Confidence 787 999999999999974 3 889999999999999665554 57889999999999999996 45 889999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|++++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|.+.+..+ +.+++|+.|++++|.+
T Consensus 196 L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 196 LNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDL 266 (457)
T ss_dssp EECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCC
T ss_pred EECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCC
Confidence 99999999865 38889999999999999996 55 8889999999999999997543 4556666655555554
Q ss_pred cccc---------ccccccCCCCEEEccCCcccCCCcc--------cccCCCCCCEEeCCCCcCCCCCcccccCCCCCCe
Q 040301 258 SGDI---------STIGALVDLETLSLASNQFQGPIPE--------SVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQ 320 (524)
Q Consensus 258 ~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 320 (524)
.... ..+..+++|+.|++++|+..+.+|. .+..+++|+.|++++|++++. + +..+++|+.
T Consensus 267 ~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~ 343 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKS 343 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSE
T ss_pred CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcE
Confidence 4321 1245679999999999987766554 256678999999999999974 3 889999999
Q ss_pred EEccCCcCcc
Q 040301 321 FNASHNRLEG 330 (524)
Q Consensus 321 l~l~~n~l~~ 330 (524)
|++++|.+++
T Consensus 344 L~l~~N~l~~ 353 (457)
T 3bz5_A 344 LSCVNAHIQD 353 (457)
T ss_dssp EECCSSCCCB
T ss_pred EECCCCCCCC
Confidence 9999999987
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=250.78 Aligned_cols=277 Identities=18% Similarity=0.179 Sum_probs=169.1
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC--CChhHhcC
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI--LPPVIGNF 99 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~ 99 (524)
-+.+++++++++ .+|..+. ++|++|++++|+++.++. ..+.++++|++|++++|.+... .+..+..+
T Consensus 9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 77 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPH--------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77 (306)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCT--------TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC
T ss_pred CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCH--------hHhhccccCCEEECCCCccCcccCcccccccc
Confidence 357888888888 6776553 588999999998887653 5578888899999999888743 24555555
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCC-ccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS-PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
. +|+.|++++|.+. .+|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 78 ~-~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 78 T-SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp S-CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred c-ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 5 6666666666665 344556666666666666666664433 355556666666666666555555555555555555
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
++++|.+.+. ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus 156 ~l~~n~l~~~-----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 156 KMAGNSFQEN-----------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp ECTTCEEGGG-----------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCccccc-----------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 5555555430 23444444555555555555555444555555556666666666655
Q ss_pred ccc-ccccccCCCCEEEccCCcccCCCcccccCCC-CCCEEeCCCCcCCCCCc--ccccCCCCCCeEEccCCcCccccCC
Q 040301 259 GDI-STIGALVDLETLSLASNQFQGPIPESVGSLI-SLESLDLSGNNLSGKIP--KSLETLSHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 259 ~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~--~~~~~l~~L~~l~l~~n~l~~~~~~ 334 (524)
+.+ ..+..+++|+.|++++|++++..|..+..++ +|+.|++++|.+++..+ .....+...+.+.+..+.+.|..|.
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 544 3455666677777777777766676677664 77888888887765422 1111122333444455566655443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=257.11 Aligned_cols=280 Identities=19% Similarity=0.204 Sum_probs=211.9
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
.....|+++++++ .+|..+. ++|++|++++|+++.++. ..+.++++|++|++++|.+++..|..|..+.
T Consensus 32 ~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 32 RNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISN--------SDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp TTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCH--------HHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 3445899999998 7777664 489999999999987653 5788899999999999999988888888887
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCC-ccccCCCCCCeEecccC-cccccCCccccCCCCCCEE
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS-PTMGRLKQLRGLSLKYN-NLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L 178 (524)
+|++|++++|.+++..+..|.++++|++|++++|++....+ ..+..+++|++|++++| .++...+..+..+++|+.|
T Consensus 101 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 -SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp -TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred -CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 89999999999986655668889999999999999886544 47888999999999988 4666667788888889999
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------- 244 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------- 244 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------
Confidence 99998888877888888888888888888886443334456788888888888887644332221
Q ss_pred cccccccccCCCCEEEccCCcccC----CCcccccCCCCCCEEeCCCCcCCCCCccc-ccCCCCCCeEEccCCcCccccC
Q 040301 259 GDISTIGALVDLETLSLASNQFQG----PIPESVGSLISLESLDLSGNNLSGKIPKS-LETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 259 ~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
......++.++++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.+++++|+++|.++
T Consensus 245 -----~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 -----GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -----ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1112334445555554443 35666777888888888888887 44444 5778888888888888877665
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=258.97 Aligned_cols=275 Identities=16% Similarity=0.167 Sum_probs=195.1
Q ss_pred CCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecc
Q 040301 78 LKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLK 157 (524)
Q Consensus 78 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 157 (524)
....+++++.++. +|..+. .+|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus 33 ~~~c~~~~~~l~~-iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 33 NGICKGSSGSLNS-IPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TSEEECCSTTCSS-CCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEeeCCCCCccc-cccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 3445555555552 333222 155666666666655555566677777777777777776666667777777777777
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCC-cCCCccChhccCCCCCCEEEcCCCcCcc
Q 040301 158 YNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIP-PCLASLTSLRELHLGSN-KLTSSIPSSLWSLEYILMINLSSNSLND 235 (524)
Q Consensus 158 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 235 (524)
+|.+++..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++| .+....+..+..+++|+.|++++|.+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 777774444446777777777777777764333 36777778888888777 3554455677778888888888888887
Q ss_pred cCCcCccCCCCCCEEEcCCCcCccccc-cccccCCCCEEEccCCcccCCCcccc---cCCCCCCEEeCCCCcCCC----C
Q 040301 236 SLPSNIQTLKVLRVLDLSRNQLSGDIS-TIGALVDLETLSLASNQFQGPIPESV---GSLISLESLDLSGNNLSG----K 307 (524)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~----~ 307 (524)
..|..+..+++|++|++++|.+...+. .+..+++|+.|++++|++++..+..+ .....++.++++++.+++ .
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 778888888888888888888876663 34457888899999998887554443 346778999999999875 3
Q ss_pred CcccccCCCCCCeEEccCCcCccccCC-CCcCCCCCcccccCCCCCCCCC
Q 040301 308 IPKSLETLSHLKQFNASHNRLEGKILV-KGSFKNFSAESFFGNYALCGLP 356 (524)
Q Consensus 308 ~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~~~~~~~~~~~n~~lc~~p 356 (524)
+|..+..+++|+.|++++|.++..... ...+..+..+++.+|+..|..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 677889999999999999999854333 2567788899999999888644
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=248.79 Aligned_cols=232 Identities=22% Similarity=0.224 Sum_probs=187.5
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCccc--CCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT--ISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
+++.|++++|.+....+..|.++++|++|++++|+++.. .+..+..+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 455555555555433334456677777777777776632 2445556777777777777776 4566677788888888
Q ss_pred ccCCcccccCC-ccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcc-cCCcCccCCCCCCEEEcCCCcC
Q 040301 180 LTGNKLSGHIP-PCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND-SLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 180 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l 257 (524)
+++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 88888775544 567888899999999999887778888999999999999999986 5788999999999999999999
Q ss_pred cccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC-CCCeEEccCCcCccccCC
Q 040301 258 SGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS-HLKQFNASHNRLEGKILV 334 (524)
Q Consensus 258 ~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~l~l~~n~l~~~~~~ 334 (524)
++.+ ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|+.+++++|+++|.+..
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 9875 6788999999999999999987777899999999999999999999999999985 999999999999987643
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=245.19 Aligned_cols=226 Identities=19% Similarity=0.301 Sum_probs=185.8
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
..+++.|||++|+++ .+|..+.++++|++|+|++|.++.++ ..+.++++|++|+|++|.+. .+|..+..
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp---------~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELP---------DTMQQFAGLETLTLARNPLR-ALPASIAS 148 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCC---------SCGGGGTTCSEEEEESCCCC-CCCGGGGG
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchh---------HHHhccCCCCEEECCCCccc-cCcHHHhc
Confidence 378999999999998 88888999999999999999988543 67888999999999999999 77888888
Q ss_pred CcccccEEEeccCcccccCCccccC---------CCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccc
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGN---------LRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDL 169 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 169 (524)
+. +|+.|++++|++.+.+|..+.. +++|+.|++++|+++ .+|..+..+++|++|++++|.++ .+|..+
T Consensus 149 l~-~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l 225 (328)
T 4fcg_A 149 LN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225 (328)
T ss_dssp CT-TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG
T ss_pred Cc-CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh
Confidence 88 9999999998888888877654 888888888888887 66777888888888888888887 456667
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCE
Q 040301 170 CHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRV 249 (524)
Q Consensus 170 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 249 (524)
..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 78888888888888877777777888888888888887777777777788888888888888777778888888888887
Q ss_pred EEcCCCcCc
Q 040301 250 LDLSRNQLS 258 (524)
Q Consensus 250 L~l~~n~l~ 258 (524)
+++..+.+.
T Consensus 306 l~l~~~~~~ 314 (328)
T 4fcg_A 306 ILVPPHLQA 314 (328)
T ss_dssp EECCGGGSC
T ss_pred EeCCHHHHH
Confidence 777766544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-29 Score=253.67 Aligned_cols=249 Identities=21% Similarity=0.190 Sum_probs=169.1
Q ss_pred CEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEeccc
Q 040301 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKY 158 (524)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 158 (524)
..++.+++.++. +|..+. .+++.|++++|.+++..+..|.++++|+.|+|++|++.++.+..|.++++|++|+|++
T Consensus 57 ~~v~c~~~~l~~-iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcCc-cCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455555555552 332221 2556666666666655566666666666666666666666666666666666666666
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC-cCCCccChhccCCCCCCEEEcCCCcCcccC
Q 040301 159 NNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSN-KLTSSIPSSLWSLEYILMINLSSNSLNDSL 237 (524)
Q Consensus 159 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 237 (524)
|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|++++| .+....+..+..+++|+.|++++|.+.+ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 6666555555666666666666666666555556666777777777663 3433333456677777777777777764 3
Q ss_pred CcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 040301 238 PSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 316 (524)
Q Consensus 238 ~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 316 (524)
| .+..+++|+.|++++|.+++.. ..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3 4667777888888888877664 5677778888888888888877777788888888888888888877677777888
Q ss_pred CCCeEEccCCcCccccC
Q 040301 317 HLKQFNASHNRLEGKIL 333 (524)
Q Consensus 317 ~L~~l~l~~n~l~~~~~ 333 (524)
+|+.+++++|++.|.+.
T Consensus 291 ~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 291 YLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TCCEEECCSSCEECSTT
T ss_pred CCCEEEccCCCcCCCCC
Confidence 88888888888877654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-30 Score=244.07 Aligned_cols=226 Identities=20% Similarity=0.228 Sum_probs=155.3
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
.-+.++.++++++ .+|..+ .++|++|++++|.++.++. ..+.++++|++|++++|.+.+..|..+..+.
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 12 PKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPA--------ASFRACRNLTILWLHSNVLARIDAAAFTGLA 80 (285)
T ss_dssp SSCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCH--------HHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence 3478888888887 666554 4588888888888877653 5677888888888888888877677777766
Q ss_pred ccccEEEeccCc-ccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 101 ASFQNFYAFNCK-LKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 101 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
+|+.|++++|. +....|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 81 -~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 81 -LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp -TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred -CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 77777777775 6655566677777777777777777766666677777777777777777655555566666677777
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
+++|++++..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 7666666555555666666666666666666555566666666666666666666544444555666666666666554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=249.00 Aligned_cols=261 Identities=28% Similarity=0.335 Sum_probs=142.9
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
++|+.||+++|++++ +|.. +++|++|++++|++++++.. .++|++|++++|.+.+ +| .+..+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~------------~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL------------PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC------------CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC------------CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 678888888888885 6643 35677777777777654311 0345555555555553 33 24444
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc----------------
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG---------------- 163 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~---------------- 163 (524)
. +|+.|++++|++++ +|.. ..+|++|++++|++.+ +| .++.+++|++|++++|.+++
T Consensus 153 ~-~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 153 S-FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 225 (454)
T ss_dssp T-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred C-CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence 4 55555555555443 2322 1344555555555443 22 34444455555554444442
Q ss_pred ---cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcC
Q 040301 164 ---SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSN 240 (524)
Q Consensus 164 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 240 (524)
.+| .+..+++|+.|++++|++.+ +|.. .++|+.|++++|.+.+ +|.. +++|+.|++++|.+.+ ++.
T Consensus 226 ~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~- 294 (454)
T 1jl5_A 226 ILEELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE- 294 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC-
T ss_pred cCCccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC-
Confidence 333 24444555555555554442 2221 2444555555554442 2221 2445555555555543 111
Q ss_pred ccCCCCCCEEEcCCCcCcccccccccc-CCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 040301 241 IQTLKVLRVLDLSRNQLSGDISTIGAL-VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLK 319 (524)
Q Consensus 241 ~~~l~~L~~L~l~~n~l~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 319 (524)
..++|+.|++++|.+++.+ .+ ++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+
T Consensus 295 --~~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 295 --LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp --CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred --cCCcCCEEECcCCcCCccc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhcc
Confidence 0135555555555554322 22 478888888888885 5543 578888888888888 4555 467888
Q ss_pred eEEccCCcCcc
Q 040301 320 QFNASHNRLEG 330 (524)
Q Consensus 320 ~l~l~~n~l~~ 330 (524)
.+++++|++++
T Consensus 361 ~L~L~~N~l~~ 371 (454)
T 1jl5_A 361 QLHVEYNPLRE 371 (454)
T ss_dssp EEECCSSCCSS
T ss_pred EEECCCCCCCc
Confidence 88888888887
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-29 Score=252.85 Aligned_cols=230 Identities=23% Similarity=0.250 Sum_probs=143.0
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+++.|++++|++....+..|.++++|+.|+|++|.+..+.+..|.++++|++|+|++|.++...+..|..+++|+.|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44455555555544444555555555555555555555555555555555555555555554444455555555555555
Q ss_pred CCcccccCCccccCCCCCCEEEccCC-cCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSN-KLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
+|.+....+..|..+++|+.|++++| .+....+..|..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence 55555444455555666666666653 3332223355666666666666666653 33 356666777777777777665
Q ss_pred c-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 261 I-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 261 ~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
. ..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.+++++|++.|.+.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 4 566677777777777777777667777777788888888888876666677777888888888888777654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=251.23 Aligned_cols=228 Identities=22% Similarity=0.223 Sum_probs=146.6
Q ss_pred CCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEe
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLS 155 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 155 (524)
++|++|+|++|++.+..+..|..+. +|+.|++++|.+.+..+..|.++++|++|+|++|+++...+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3455555555555555555555554 555555555555555555566666666666666666655555566666666666
Q ss_pred cccCcccccCCccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCc
Q 040301 156 LKYNNLEGSIPYDLCHLKLMYGIRLTG-NKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234 (524)
Q Consensus 156 L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 234 (524)
|++|.++...+..|..+++|+.|++++ |.+....+..|..+++|+.|++++|.+.+. | .+..+++|+.|+|++|.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 666666655555566666666666666 333333334566666777777777766632 3 3566677777777777777
Q ss_pred ccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCC
Q 040301 235 DSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306 (524)
Q Consensus 235 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 306 (524)
+..|..|..+++|+.|++++|.+++.. ..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 666667777777777777777776654 556777777777777777776666667778888888888887753
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=250.04 Aligned_cols=247 Identities=21% Similarity=0.216 Sum_probs=139.6
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
....++.++++++ .+|..+. ++++.|+|++|+++.+.. ..|.++++|++|+|++|.+....+..|..+.
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKV--------NSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECT--------TTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCH--------HHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence 3455666666665 5555443 456666666666655433 4555666666666666666554444444444
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|+++...+..|.++++|++|++++|++....+. .|..+++|+.|++
T Consensus 113 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------------------~~~~l~~L~~L~l 167 (440)
T 3zyj_A 113 -NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY------------------------AFNRIPSLRRLDL 167 (440)
T ss_dssp -SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT------------------------TTTTCTTCCEEEC
T ss_pred -cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHH------------------------HhhhCcccCEeCC
Confidence 455555555544444344444444455555444444444444 4444455555555
Q ss_pred cCC-cccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc
Q 040301 181 TGN-KLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG 259 (524)
Q Consensus 181 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 259 (524)
++| .+....+..|..+++|+.|++++|.++ .+| .+..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+++
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 442 223223334555555555555555555 223 24555666666666666665556666666666666666666665
Q ss_pred cc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 040301 260 DI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305 (524)
Q Consensus 260 ~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 305 (524)
.. ..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 54 45666667777777777777655666677777777777777765
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=239.26 Aligned_cols=227 Identities=24% Similarity=0.226 Sum_probs=124.5
Q ss_pred CEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEeccc
Q 040301 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKY 158 (524)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 158 (524)
++++.+++.+.. +|..+ ..+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 566666666663 23222 12555555555555554445555555555555555555554455555555555555555
Q ss_pred Cc-ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccC
Q 040301 159 NN-LEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSL 237 (524)
Q Consensus 159 n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 237 (524)
|. ++...+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 90 n~~l~~~~~~~~~~l------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 90 NAQLRSVDPATFHGL------------------------GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp CTTCCCCCTTTTTTC------------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCccccCHHHhcCC------------------------cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 54 443334444444 45555555555444444444445555555555555554444
Q ss_pred CcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 040301 238 PSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 316 (524)
Q Consensus 238 ~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 316 (524)
+..+..+++|++|++++|.+++.+ ..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+..++
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 444555555555555555555444 2355556666666666666655566666666666666666666655555566666
Q ss_pred CCCeEEccCCcCccccC
Q 040301 317 HLKQFNASHNRLEGKIL 333 (524)
Q Consensus 317 ~L~~l~l~~n~l~~~~~ 333 (524)
+|+.+++++|++.+.++
T Consensus 226 ~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TCCEEECCSSCEECSGG
T ss_pred ccCEEeccCCCccCCCC
Confidence 66666666666665544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=241.59 Aligned_cols=284 Identities=26% Similarity=0.324 Sum_probs=215.0
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
+++.|++++|++++ +|.. .++|++|++++|.+++++ .. +++|++|++++|.+.+... ..
T Consensus 72 ~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~lp---------~~---~~~L~~L~l~~n~l~~l~~-----~~ 130 (454)
T 1jl5_A 72 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTELP---------EL---PQSLKSLLVDNNNLKALSD-----LP 130 (454)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCC---------CC---CTTCCEEECCSSCCSCCCS-----CC
T ss_pred CCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCccc---------cc---cCCCcEEECCCCccCcccC-----CC
Confidence 56999999999994 5542 368999999999998754 22 3789999999999996422 21
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
.+|++|++++|++++ +| .|+++++|++|++++|++++ +|.. .++|++|++++|.+++ +| .+..+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 389999999999996 67 59999999999999999986 4543 3599999999999996 56 6899999999999
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
++|.+.+ +|... ++|+.|++++|.+. .+|. +..+++|+.|++++|++.+ +|.. +++|+.|++++|.+++.
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc
Confidence 9999885 44332 58889999988887 5664 7888888899998888875 4432 36777777777777664
Q ss_pred cccccccCCCCEEEccCCcccC--CCccc-------------ccCC-CCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 261 ISTIGALVDLETLSLASNQFQG--PIPES-------------VGSL-ISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 261 ~~~~~~l~~L~~L~L~~N~l~~--~~~~~-------------~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
+.. .++|+.|++++|++++ ..|.. +..+ ++|+.|++++|++++ +|.. +++|+.++++
T Consensus 273 ~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 273 PEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred Ccc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 432 2455555555555554 12211 1123 589999999999985 5554 5889999999
Q ss_pred CCcCccccCCCCcCCCCCcccccCCCCCC
Q 040301 325 HNRLEGKILVKGSFKNFSAESFFGNYALC 353 (524)
Q Consensus 325 ~n~l~~~~~~~~~~~~~~~~~~~~n~~lc 353 (524)
+|.++. +|. .+..+..+++.+|....
T Consensus 346 ~N~l~~-lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 346 FNHLAE-VPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSS
T ss_pred CCcccc-ccc--hhhhccEEECCCCCCCc
Confidence 999985 444 46778888888886543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=237.95 Aligned_cols=232 Identities=23% Similarity=0.282 Sum_probs=117.4
Q ss_pred CCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEe
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLS 155 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 155 (524)
++++.|+|++|.+. .+|..+..+. +|+.|++++|.+. .+|..++++++|++|++++|.+. .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 44555555555555 3344444444 5555555555555 45555555555555555555555 4455555555555555
Q ss_pred cccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcc
Q 040301 156 LKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND 235 (524)
Q Consensus 156 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 235 (524)
+++|++.+.+|..+... ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+
T Consensus 157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 55555554555443320 00111223444444444444444 334444444444444444444442
Q ss_pred cCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccC
Q 040301 236 SLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLET 314 (524)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 314 (524)
+|..+..+++|++|++++|.+.+.. ..+..+++|+.|+|++|++.+.+|..+..+++|+.|++++|.+.+.+|+.+..
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 3333444444444444444443322 33444555555555555555556666666666666666666666666666666
Q ss_pred CCCCCeEEccCCcC
Q 040301 315 LSHLKQFNASHNRL 328 (524)
Q Consensus 315 l~~L~~l~l~~n~l 328 (524)
+++++.+++..+.+
T Consensus 300 L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 300 LPANCIILVPPHLQ 313 (328)
T ss_dssp SCTTCEEECCGGGS
T ss_pred ccCceEEeCCHHHH
Confidence 66666666665543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=246.11 Aligned_cols=262 Identities=25% Similarity=0.337 Sum_probs=220.7
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+++.|++++|+++ .+|..+. ++|++|++++|.++.++ . .+++|++|+|++|++++ +|. .+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp---------~---~l~~L~~L~Ls~N~l~~-lp~---~l 100 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP---------A---LPPELRTLEVSGNQLTS-LPV---LP 100 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCC---------C---CCTTCCEEEECSCCCSC-CCC---CC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCC---------C---cCCCCCEEEcCCCcCCc-CCC---CC
Confidence 47999999999999 8888776 79999999999998654 2 46899999999999995 444 44
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
. +|+.|++++|.+++ +|. .+++|+.|++++|+++.+ |. .+++|++|++++|.+++ +|. .+++|+.|+
T Consensus 101 ~-~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~ 167 (622)
T 3g06_A 101 P-GLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLW 167 (622)
T ss_dssp T-TCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred C-CCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEE
Confidence 5 99999999999985 444 678999999999999864 43 35899999999999984 444 357899999
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG 259 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 259 (524)
+++|.+++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.+.. +|. .+++|+.|++++|.+++
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~ 235 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS 235 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc
Confidence 99999985 55 456899999999999985 4443 5789999999999984 554 35889999999999998
Q ss_pred ccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 260 DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 260 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
.+ ..+++|+.|+|++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus 236 lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 236 LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 76 45689999999999999 4665 6789999999999999 778999999999999999999987654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-30 Score=247.29 Aligned_cols=247 Identities=19% Similarity=0.208 Sum_probs=169.6
Q ss_pred CCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCccc-ccCCcccc-------CCCCCCeEEcccCcCcccCCcc
Q 040301 73 TNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLK-GNIPQEIG-------NLRGLTLLSLFNNDLNGTISPT 144 (524)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~ 144 (524)
...++|++|++++|.+ .+|..+.. .|+.|++++|.+. ..+|..+. ++++|++|++++|++++..|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3445677777777777 45555443 3666777777763 34555554 6777777777777777666665
Q ss_pred c--cCCCCCCeEecccCcccccCCccccCC-----CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCc--cCh
Q 040301 145 M--GRLKQLRGLSLKYNNLEGSIPYDLCHL-----KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSS--IPS 215 (524)
Q Consensus 145 ~--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~ 215 (524)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 6777777777777777755 6666655 7777777777777766667777777777777777776543 233
Q ss_pred hc--cCCCCCCEEEcCCCcCcc---cCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEEEccCCcccCCCcccc
Q 040301 216 SL--WSLEYILMINLSSNSLND---SLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQGPIPESV 288 (524)
Q Consensus 216 ~~--~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~ 288 (524)
.+ ..+++|+.|++++|.+.+ .....+..+++|+.|++++|.+++.+ ..+..+++|+.|+|++|+++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 667777777777777762 11123346677788888888777654 34555677888888888887 566665
Q ss_pred cCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcc
Q 040301 289 GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 289 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 330 (524)
. ++|+.|++++|++++. |. +..+++|+.+++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5 7788888888888755 55 7778888888888888765
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=246.88 Aligned_cols=250 Identities=21% Similarity=0.233 Sum_probs=212.0
Q ss_pred ccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCC-CCCChhHh-------cCcccccEEEecc
Q 040301 39 TFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLG-GILPPVIG-------NFSASFQNFYAFN 110 (524)
Q Consensus 39 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~~~~~L~~L~l~~ 110 (524)
.++..++|++|++++|.+ .++ ..+... |++|+|++|.+. ..+|..+. .+. +|++|++++
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p---------~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~ 104 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADL---------GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLEN 104 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCC---------HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEE
T ss_pred EEccCCCceeEeeccccc-ccH---------HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccC
Confidence 456778899999999999 443 333332 899999999994 45777665 676 999999999
Q ss_pred CcccccCCccc--cCCCCCCeEEcccCcCcccCCccccCC-----CCCCeEecccCcccccCCccccCCCCCCEEEccCC
Q 040301 111 CKLKGNIPQEI--GNLRGLTLLSLFNNDLNGTISPTMGRL-----KQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGN 183 (524)
Q Consensus 111 n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 183 (524)
|.+++..|..+ ..+++|++|++++|++++. |..++.+ ++|++|++++|++++..|..+..+++|+.|++++|
T Consensus 105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred CcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 99999899886 8999999999999999977 7777777 99999999999999888899999999999999999
Q ss_pred ccccc--CCccc--cCCCCCCEEEccCCcCCCc--cC-hhccCCCCCCEEEcCCCcCcccCC-cCccCCCCCCEEEcCCC
Q 040301 184 KLSGH--IPPCL--ASLTSLRELHLGSNKLTSS--IP-SSLWSLEYILMINLSSNSLNDSLP-SNIQTLKVLRVLDLSRN 255 (524)
Q Consensus 184 ~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n 255 (524)
++.+. .+..+ ..+++|++|++++|.+.+. ++ ..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 97654 23344 7899999999999999832 22 445688999999999999998664 55677899999999999
Q ss_pred cCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCC
Q 040301 256 QLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306 (524)
Q Consensus 256 ~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 306 (524)
.++..+..+. ++|+.|+|++|++++. |. +..+++|+.|++++|++++
T Consensus 264 ~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 264 GLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9997776655 8899999999999975 66 8999999999999999985
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-30 Score=249.54 Aligned_cols=266 Identities=21% Similarity=0.196 Sum_probs=168.5
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
+++..+++.+.+.......+..+++|++|+|++|+++.+.. ..+.++++|++|+|++|.+.+..+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~------- 75 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA--------ADLAPFTKLELLNLSSNVLYETLD------- 75 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCH--------HHHTTCTTCCEEECTTSCCEEEEE-------
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCH--------HHhhCCCcCCEEECCCCcCCcchh-------
Confidence 35555566666554444444455566666666666554321 345555556666666555553322
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
|..+++|++|++++|++++.. ..++|++|++++|.+++..+.. +++|+.|++
T Consensus 76 --------------------~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l 127 (317)
T 3o53_A 76 --------------------LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYL 127 (317)
T ss_dssp --------------------ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEEC
T ss_pred --------------------hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEEC
Confidence 445555555555555555322 2255666666666665443322 355666666
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhc-cCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSL-WSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG 259 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 259 (524)
++|++++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+. +. ...+++|++|++++|.+++
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence 6666665555566666677777777777665545544 3567777777777777653 22 2347788888888888887
Q ss_pred ccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCC-CCCcccccCCCCCCeEEccCC-cCcccc
Q 040301 260 DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS-GKIPKSLETLSHLKQFNASHN-RLEGKI 332 (524)
Q Consensus 260 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~l~l~~n-~l~~~~ 332 (524)
.+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+. +..|..+..+++|+.+++.++ .+++..
T Consensus 206 l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 7766778888888888888888 46777888888888888888887 677788888888888888743 344433
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-31 Score=269.39 Aligned_cols=308 Identities=23% Similarity=0.190 Sum_probs=216.7
Q ss_pred CCccEEEccCCcccccCCcc-cccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 20 QIYWVMDLSSNSFSGHIPNT-FGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
++|+.||+++|+++...... +..+++|++|++++|+++.... ..++ ..+..+++|++|+|++|.+....+..+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--~~l~--~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--KDIS--SALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--HHHH--HHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH--HHHH--HHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 56888888888887554333 6778888888888888774310 0111 55667788888888888887654544444
Q ss_pred Ccc----cccEEEeccCcccc----cCCccccCCCCCCeEEcccCcCcccCCccc-----cCCCCCCeEecccCccccc-
Q 040301 99 FSA----SFQNFYAFNCKLKG----NIPQEIGNLRGLTLLSLFNNDLNGTISPTM-----GRLKQLRGLSLKYNNLEGS- 164 (524)
Q Consensus 99 ~~~----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~i~~~- 164 (524)
... +|++|++++|.++. .++..+..+++|++|++++|.++...+..+ ...++|++|++++|.+++.
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 222 48888888888874 457778888888888888888875433322 2356788888888888763
Q ss_pred ---CCccccCCCCCCEEEccCCcccccCCcccc-----CCCCCCEEEccCCcCCCc----cChhccCCCCCCEEEcCCCc
Q 040301 165 ---IPYDLCHLKLMYGIRLTGNKLSGHIPPCLA-----SLTSLRELHLGSNKLTSS----IPSSLWSLEYILMINLSSNS 232 (524)
Q Consensus 165 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~ 232 (524)
++..+..+++|+.|++++|.+.+..+..+. ..++|+.|++++|.++.. ++..+..+++|+.|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 355666778888888888887654333332 356888888888888753 46667778888888888888
Q ss_pred CcccC-----CcCccCCCCCCEEEcCCCcCcc-----ccccccccCCCCEEEccCCcccCCCccccc-----CCCCCCEE
Q 040301 233 LNDSL-----PSNIQTLKVLRVLDLSRNQLSG-----DISTIGALVDLETLSLASNQFQGPIPESVG-----SLISLESL 297 (524)
Q Consensus 233 l~~~~-----~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L 297 (524)
+.+.. +..+..+++|++|++++|.+++ .+..+..+++|+.|++++|++.+..+..+. ..++|+.|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 76532 2223357888888888888876 335566678888888888887654333332 23688888
Q ss_pred eCCCCcCCCC----CcccccCCCCCCeEEccCCcCccc
Q 040301 298 DLSGNNLSGK----IPKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 298 ~l~~N~l~~~----~~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
++++|.+++. ++..+..+++|+.|++++|.+++.
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 8888888755 455666778888888888887654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-29 Score=246.65 Aligned_cols=241 Identities=19% Similarity=0.169 Sum_probs=203.1
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
.++.++++++.+...++..+...+ +|++|++++|.+++..|..|.++++|++|++++|++++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGG-GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCC-CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 355666677766644444444444 88888888888887777889999999999999999987654 899999999999
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc
Q 040301 157 KYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236 (524)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (524)
++|.+++.. ..++|+.|++++|++.+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999998432 4489999999999998665443 67899999999999987777899999999999999999987
Q ss_pred CCcCc-cCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCC
Q 040301 237 LPSNI-QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETL 315 (524)
Q Consensus 237 ~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 315 (524)
.+..+ ..+++|++|++++|.+++.+. ...+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 66666 478999999999999987753 3358999999999999995 5556899999999999999999 578889999
Q ss_pred CCCCeEEccCCcCccc
Q 040301 316 SHLKQFNASHNRLEGK 331 (524)
Q Consensus 316 ~~L~~l~l~~n~l~~~ 331 (524)
++|+.+++++|++.+.
T Consensus 237 ~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTCCEEECTTCCCBHH
T ss_pred CCCCEEEccCCCccCc
Confidence 9999999999999843
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-30 Score=265.12 Aligned_cols=303 Identities=20% Similarity=0.201 Sum_probs=163.7
Q ss_pred CCccEEEccCCcccc----cCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCC----CCCEEEccCCCCCC-
Q 040301 20 QIYWVMDLSSNSFSG----HIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCR----HLKALSLGSNPLGG- 90 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~n~l~~- 90 (524)
++|+.|++++|++++ .++..+..+++|++|+|++|.+++... . .....++ +|++|+|++|.++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-----~--~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV-----H--CVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH-----H--HHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH-----H--HHHHHHhhCCCceeEEEccCCCCCHH
Confidence 567777777777663 234555666777777777776654210 0 0111222 56677777666663
Q ss_pred ---CCChhHhcCcccccEEEeccCcccccCCcccc-----CCCCCCeEEcccCcCcccC----CccccCCCCCCeEeccc
Q 040301 91 ---ILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG-----NLRGLTLLSLFNNDLNGTI----SPTMGRLKQLRGLSLKY 158 (524)
Q Consensus 91 ---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~ 158 (524)
.++..+..++ +|++|++++|.++...+..+. ..++|++|++++|++++.. +..+..+++|++|++++
T Consensus 101 ~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 101 GCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp GHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 2355555665 666666666666543333222 2445666666666666432 33445556666666666
Q ss_pred CcccccCCcccc-----CCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCcCCCcc-----ChhccCCCCCC
Q 040301 159 NNLEGSIPYDLC-----HLKLMYGIRLTGNKLSGH----IPPCLASLTSLRELHLGSNKLTSSI-----PSSLWSLEYIL 224 (524)
Q Consensus 159 n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~ 224 (524)
|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+.... +..+..+++|+
T Consensus 180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence 666543333332 244666666666666542 3444555666666666666654321 11222456666
Q ss_pred EEEcCCCcCccc----CCcCccCCCCCCEEEcCCCcCcccc-cccc-----ccCCCCEEEccCCcccCC----CcccccC
Q 040301 225 MINLSSNSLNDS----LPSNIQTLKVLRVLDLSRNQLSGDI-STIG-----ALVDLETLSLASNQFQGP----IPESVGS 290 (524)
Q Consensus 225 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~-----~l~~L~~L~L~~N~l~~~----~~~~~~~ 290 (524)
.|++++|.+++. ++..+..+++|++|++++|.+.+.. ..+. ..++|+.|++++|.+++. ++..+..
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 666666666542 3444555666666666666654322 1111 124566666666666543 2344455
Q ss_pred CCCCCEEeCCCCcCCCCCcccccC-----CCCCCeEEccCCcCcc
Q 040301 291 LISLESLDLSGNNLSGKIPKSLET-----LSHLKQFNASHNRLEG 330 (524)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~l~l~~n~l~~ 330 (524)
+++|+.|++++|.+++..+..+.. .++|+.|++++|.+++
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 566666666666665443333321 4566666666666553
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=253.82 Aligned_cols=233 Identities=21% Similarity=0.202 Sum_probs=133.0
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
+|++|+|++|.+.+..|..|..++ +|+.|++++|.+++..| |..+++|+.|++++|.+++..+ .++|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 566666666666655555555555 55555555555554443 5666666666666666654322 256666666
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhcc-CCCCCCEEEcCCCcCcc
Q 040301 157 KYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLW-SLEYILMINLSSNSLND 235 (524)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 235 (524)
++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|+|++|.+.+
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 66666644332 235566666666666655555566666666666666666655555544 45666666666666654
Q ss_pred cCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCC-CCCcccccC
Q 040301 236 SLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS-GKIPKSLET 314 (524)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~ 314 (524)
. +. ...+++|+.|++++|.+++.+..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 184 V-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred c-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 3 21 224566666666666666555555556666666666666663 4555555666666666666665 344445555
Q ss_pred CCCCCeEEc
Q 040301 315 LSHLKQFNA 323 (524)
Q Consensus 315 l~~L~~l~l 323 (524)
++.++.+++
T Consensus 261 l~~L~~l~~ 269 (487)
T 3oja_A 261 NQRVQTVAK 269 (487)
T ss_dssp CHHHHHHHH
T ss_pred CCCCcEEec
Confidence 544444443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=237.65 Aligned_cols=255 Identities=26% Similarity=0.287 Sum_probs=212.1
Q ss_pred CCCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCC
Q 040301 13 DSPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGIL 92 (524)
Q Consensus 13 ~~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 92 (524)
.+|..-+++|+.|++++|+|+ .+|. .+++|++|+|++|+++.++ . .+++|++|++++|.+.+..
T Consensus 54 ~lp~~l~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp---------~---~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 54 TLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLP---------V---LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp CCCSCCCTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCC---------C---CCTTCCEEEECSCCCCCCC
T ss_pred ccChhhCCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCC---------C---CCCCCCEEECcCCcCCCCC
Confidence 334433489999999999999 6666 5789999999999998653 2 5789999999999999654
Q ss_pred ChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCC
Q 040301 93 PPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHL 172 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 172 (524)
+ .+. +|+.|++++|+++. +|.. +++|++|++++|++++. |. .+++|+.|++++|.+++ +| ..+
T Consensus 118 ~----~l~-~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~ 180 (622)
T 3g06_A 118 A----LPS-GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLP 180 (622)
T ss_dssp C----CCT-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred C----CCC-CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccC
Confidence 3 344 89999999999985 5543 58999999999999854 33 35789999999999994 55 457
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEc
Q 040301 173 KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252 (524)
Q Consensus 173 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 252 (524)
++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.. +++|+.|++++|.+++ +| ..+++|+.|++
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L 248 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMV 248 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence 899999999999985 4443 478999999999998 44543 5889999999999986 55 46689999999
Q ss_pred CCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 040301 253 SRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 316 (524)
Q Consensus 253 ~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 316 (524)
++|.++.++. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus 249 s~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 249 SGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999997766 5789999999999999 6788999999999999999999988888766544
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-28 Score=248.73 Aligned_cols=234 Identities=20% Similarity=0.165 Sum_probs=147.1
Q ss_pred CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCC
Q 040301 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNL 124 (524)
Q Consensus 45 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 124 (524)
+|++|+|++|.++.++. ..+.++++|++|+|++|.+++..| +..++ +|+.|++++|.+++.. ..
T Consensus 35 ~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~-----~~ 98 (487)
T 3oja_A 35 NVKELDLSGNPLSQISA--------ADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELL-----VG 98 (487)
T ss_dssp GCCEEECCSSCCCCCCG--------GGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEE-----EC
T ss_pred CccEEEeeCCcCCCCCH--------HHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCC-----CC
Confidence 45555555555544321 344455555555555555544333 44444 5555555555554322 12
Q ss_pred CCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCcccc-CCCCCCEEE
Q 040301 125 RGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA-SLTSLRELH 203 (524)
Q Consensus 125 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ 203 (524)
++|+.|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 5666666666666654433 345667777777777666666666677777777777777666665554 567777777
Q ss_pred ccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCccc-C
Q 040301 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQ-G 282 (524)
Q Consensus 204 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~-~ 282 (524)
+++|.+++. + ....+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++.+..+..+++|+.|++++|++. +
T Consensus 176 Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 176 LQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 777777644 2 22346777777777777775 444477777888888888888777766777788888888888877 5
Q ss_pred CCcccccCCCCCCEEeCC
Q 040301 283 PIPESVGSLISLESLDLS 300 (524)
Q Consensus 283 ~~~~~~~~l~~L~~L~l~ 300 (524)
.+|..+..++.|+.++++
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 566777777777776664
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-26 Score=215.29 Aligned_cols=208 Identities=22% Similarity=0.202 Sum_probs=126.0
Q ss_pred CCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040301 126 GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205 (524)
Q Consensus 126 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 205 (524)
+|++|++++|++++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444445555555555555555554444445555555555555555554444555555555555555
Q ss_pred CCcCCCccChhccCCCCCCEEEcCCCcCccc-CCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCC----EEEccCCc
Q 040301 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDS-LPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLE----TLSLASNQ 279 (524)
Q Consensus 206 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~----~L~L~~N~ 279 (524)
+|.+.+..+..+..+++|+.|++++|.+.+. +|..+..+++|++|++++|.+++.+ ..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555544444455566666666666665542 4556666666666666666666544 3444444444 77888888
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC
Q 040301 280 FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 280 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 334 (524)
+.+..+..+ ...+|+.|++++|++++..+..+..+++|+.+++++|+++|.++.
T Consensus 189 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 189 MNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 875444444 344788888888888866666678888888888888888887654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=214.08 Aligned_cols=207 Identities=20% Similarity=0.167 Sum_probs=138.1
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+++.|++++|.+++..+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 44455555555544444455556666666666666665555556666666666666666665555566666666666666
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCCc-cChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCC----EEEcCCCc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSS-IPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLR----VLDLSRNQ 256 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l~~n~ 256 (524)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|.+.+..+..+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666655554566667777777777776642 466677777777777777777665555565555555 78888888
Q ss_pred CccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCC
Q 040301 257 LSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308 (524)
Q Consensus 257 l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 308 (524)
+++.+.......+|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 8776654444557888999999888766666788999999999999988543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=206.72 Aligned_cols=203 Identities=25% Similarity=0.292 Sum_probs=125.6
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+.+.+|+++++++ .+|..+. ++|++|++++|+++.++. ..+.++++|++|++++|.+....+..|..+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPS--------KAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCT--------TSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCH--------HHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 46788999999998 6776664 579999999999887653 578888899999999888885555445555
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
. +|++|++++|.+....+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++.
T Consensus 85 ~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------- 148 (270)
T 2o6q_A 85 K-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL--------------- 148 (270)
T ss_dssp T-TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------
T ss_pred C-CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc---------------
Confidence 4 566666665555544444555555555555555555554444555555555555555555433
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
.+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 149 ---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 149 ---------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ---------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 3333444555555555555555444444555555555555555555444444555666666666666554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=204.66 Aligned_cols=204 Identities=22% Similarity=0.237 Sum_probs=125.1
Q ss_pred CCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 040301 127 LTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGS 206 (524)
Q Consensus 127 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 206 (524)
.+.+++++++++. +|..+. ++|++|++++|++++..+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3445555555542 222221 3455555555555544444455555555555555555544444445556666666666
Q ss_pred CcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCc
Q 040301 207 NKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIP 285 (524)
Q Consensus 207 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~ 285 (524)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.+ ..+..+++|+.|+|++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 6665444455556666666666666666555555666667777777777666655 335667777777777777776656
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 286 ESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 286 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
..|..+++|+.|++++|++++..+..+..+++|+.+++++|++.+.+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 667777888888888888876656667777888888888888777654
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-26 Score=214.55 Aligned_cols=138 Identities=25% Similarity=0.229 Sum_probs=75.1
Q ss_pred cccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 040301 120 EIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199 (524)
Q Consensus 120 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 199 (524)
.+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 34455556666666666655555555555666666666665554444445555555555555555554444445555555
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 5555555555544444445555555555555555544444445555555555555543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=205.97 Aligned_cols=205 Identities=22% Similarity=0.177 Sum_probs=158.2
Q ss_pred ccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040301 121 IGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200 (524)
Q Consensus 121 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 200 (524)
++++++|+.+++++|.++. +|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 5667777777777777774 333332 577777888777777667777777788888888877765433 26677888
Q ss_pred EEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCc
Q 040301 201 ELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQ 279 (524)
Q Consensus 201 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~ 279 (524)
.|++++|.+. .+|..+..+++|+.|++++|++.+..+..|..+++|++|++++|++++.+ ..+..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 8888888887 56777778888888888888888766677888888888888888888776 456778888888888888
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcccc
Q 040301 280 FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332 (524)
Q Consensus 280 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 332 (524)
+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|++.|.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 88666666778889999999999988 67777778888999999999988755
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-25 Score=210.16 Aligned_cols=224 Identities=21% Similarity=0.219 Sum_probs=156.4
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
.+..+++..+.+++. ..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+. ..+..+.
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~----------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~ 85 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV----------QGIQYLPNVRYLALGGNKLHDI--SALKELT 85 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC----------TTGGGCTTCCEEECTTSCCCCC--GGGTTCT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc----------cccccCCCCcEEECCCCCCCCc--hhhcCCC
Confidence 445556666666533 2355677777777777777654 3456677777777777777653 3566665
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 86 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 86 -NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp -TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 7777777777777666666777777777777777777666666777777777777777777666666777777778888
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++|+.|++..|.+++.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGG
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCc
Confidence 7777776666666777778888888887776666667777788888888777654 244677777777777664
Q ss_pred c-ccccc
Q 040301 261 I-STIGA 266 (524)
Q Consensus 261 ~-~~~~~ 266 (524)
. ..++.
T Consensus 238 ip~~~~~ 244 (272)
T 3rfs_A 238 VRNSAGS 244 (272)
T ss_dssp BBCTTSC
T ss_pred ccCcccc
Confidence 4 34443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-24 Score=204.01 Aligned_cols=154 Identities=24% Similarity=0.187 Sum_probs=74.5
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+++.|++++|.+++..+..|.++++|+.|++++|.+++..+. +.+++|++|++++|.++ .+|..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 444444444444444445555556666666666665543322 45555555555555555 344444455555555555
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
+|++++..+..|..+++|+.|++++|++.+..+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|+++
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 55554444444444555555555555544333333444444444444444444333333334444444444444443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-25 Score=221.25 Aligned_cols=254 Identities=20% Similarity=0.179 Sum_probs=163.4
Q ss_pred EEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCC-CCCEEEccCCCCCCCCChhHhcC---
Q 040301 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCR-HLKALSLGSNPLGGILPPVIGNF--- 99 (524)
Q Consensus 24 ~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~--- 99 (524)
.++++.|++++.+|..+...++|++|+|++|.+++... ..+...+.+++ +|++|+|++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST----VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHH----HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 47899999998888877777779999999999887531 00113456777 89999999999998877777775
Q ss_pred --cccccEEEeccCcccccCCcccc----CC-CCCCeEEcccCcCcccCCccc----cC-CCCCCeEecccCcccccC--
Q 040301 100 --SASFQNFYAFNCKLKGNIPQEIG----NL-RGLTLLSLFNNDLNGTISPTM----GR-LKQLRGLSLKYNNLEGSI-- 165 (524)
Q Consensus 100 --~~~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~i~~~~-- 165 (524)
. +|++|++++|.+++..+..+. .+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++..
T Consensus 78 ~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 78 IPA-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp SCT-TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred cCC-CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 5 888888888888876666443 33 788888888888876555443 33 357888888888887432
Q ss_pred --CccccCCC-CCCEEEccCCcccccCCccc----cCC-CCCCEEEccCCcCCCc----cChhccC-CCCCCEEEcCCCc
Q 040301 166 --PYDLCHLK-LMYGIRLTGNKLSGHIPPCL----ASL-TSLRELHLGSNKLTSS----IPSSLWS-LEYILMINLSSNS 232 (524)
Q Consensus 166 --~~~~~~l~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~ 232 (524)
+..+..++ +|+.|++++|++++..+..+ ..+ ++|+.|++++|.+... ++..+.. .++|+.|+|++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 33344454 77777777777765544333 333 4777777777776642 3334443 3466666666666
Q ss_pred CcccCC----cCccCCCCCCEEEcCCCcCcccc--------ccccccCCCCEEEccCCcccC
Q 040301 233 LNDSLP----SNIQTLKVLRVLDLSRNQLSGDI--------STIGALVDLETLSLASNQFQG 282 (524)
Q Consensus 233 l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~l~~L~~L~L~~N~l~~ 282 (524)
+.+..+ ..+..+++|+.|++++|.+.+.. ..+..+++|+.|++++|++..
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 654322 22344555666666655532211 223344444555555555443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-25 Score=217.09 Aligned_cols=256 Identities=15% Similarity=0.236 Sum_probs=135.4
Q ss_pred CCccEEEccCCcccccCCcccccc--cCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC-CChhH
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNL--RHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI-LPPVI 96 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~ 96 (524)
..++.+|+++|++. +..+..+ ++++.|++++|.+.+.. ..+.++++|++|++++|.+.+. ++..+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~---------~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 114 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPL---------AEHFSPFRVQHMDLSNSVIEVSTLHGIL 114 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCC---------CSCCCCBCCCEEECTTCEECHHHHHHHH
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccc---------hhhccCCCCCEEEccCCCcCHHHHHHHH
Confidence 34777888877776 3455666 67788888877776543 2344567777777777776644 45555
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCCCeEEcccC-cCccc-CCccccCCCCCCeEecccC-ccccc-CCccccCC
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNN-DLNGT-ISPTMGRLKQLRGLSLKYN-NLEGS-IPYDLCHL 172 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l 172 (524)
..++ +|++|++++|.+++..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..+
T Consensus 115 ~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 115 SQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp TTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred hhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 5554 5666666666555555555555566666666555 34431 3333445555555555555 45432 33334444
Q ss_pred C-CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCC-CccChhccCCCCCCEEEcCCCc-CcccCCcCccCCCCCCE
Q 040301 173 K-LMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLT-SSIPSSLWSLEYILMINLSSNS-LNDSLPSNIQTLKVLRV 249 (524)
Q Consensus 173 ~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 249 (524)
+ +|+.|++++|.+ .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++
T Consensus 194 ~~~L~~L~l~~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 194 SETITQLNLSGYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp CTTCCEEECCSCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred ccCCCEEEeCCCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 4 444444444421 222 2233444445555555555555 44344444555555555
Q ss_pred EEcCCCc-Ccccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCccccc
Q 040301 250 LDLSRNQ-LSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLE 313 (524)
Q Consensus 250 L~l~~n~-l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 313 (524)
|++++|. +.... ..+..+++|+.|++++| +....-..+. .++..|++++|++++..|..+.
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 5555553 21111 23455566666666665 3321111111 1244455666666666665544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=196.10 Aligned_cols=196 Identities=20% Similarity=0.177 Sum_probs=134.5
Q ss_pred CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCC-CCCCCChhHhcCcccccEEEecc-CcccccCCcccc
Q 040301 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNP-LGGILPPVIGNFSASFQNFYAFN-CKLKGNIPQEIG 122 (524)
Q Consensus 45 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~ 122 (524)
+|++|++++|+++.++. ..+.++++|++|++++|. ++...+..|..+. +|+.|++++ |.++...+..|.
T Consensus 32 ~l~~L~l~~n~l~~i~~--------~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS--------HAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp TCCEEEEESCCCSEECT--------TTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEE
T ss_pred cccEEEEeCCcceEECH--------HHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhC
Confidence 66777777776666543 456666677777777775 6655555666665 677777776 666666666677
Q ss_pred CCCCCCeEEcccCcCcccCCccccCCCCCC---eEecccC-cccccCCccccCCCCCC-EEEccCCcccccCCccccCCC
Q 040301 123 NLRGLTLLSLFNNDLNGTISPTMGRLKQLR---GLSLKYN-NLEGSIPYDLCHLKLMY-GIRLTGNKLSGHIPPCLASLT 197 (524)
Q Consensus 123 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~ 197 (524)
++++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|++....+..+.. +
T Consensus 103 ~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T 179 (239)
T ss_dssp CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C
Confidence 77777777777777775 443 66777777 7777777 77766566677777777 7777777777433333443 6
Q ss_pred CCCEEEccCCc-CCCccChhccCC-CCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCC
Q 040301 198 SLRELHLGSNK-LTSSIPSSLWSL-EYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRN 255 (524)
Q Consensus 198 ~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 255 (524)
+|+.|++++|+ ++...+..|..+ ++|+.|++++|.+.+ +|.. .+++|+.|+++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 78888888884 775555667777 788888888888874 4433 5677888887765
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-25 Score=219.51 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=53.8
Q ss_pred CCCCCCCCEEEccCCCCCCCCC----hhHhcCcccccEEEeccCcccccCCccccCC-----CCCCeEEcccCcCcccCC
Q 040301 72 LTNCRHLKALSLGSNPLGGILP----PVIGNFSASFQNFYAFNCKLKGNIPQEIGNL-----RGLTLLSLFNNDLNGTIS 142 (524)
Q Consensus 72 ~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~ 142 (524)
+...++|++|||++|.+++..+ ..+..++.+|++|++++|.+++..+..+..+ ++|++|++++|.+++..+
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3334446666666666555444 3344333245555555555554444444443 555555555555554333
Q ss_pred cc----ccCC-CCCCeEecccCcccccCCccc----cC-CCCCCEEEccCCccc
Q 040301 143 PT----MGRL-KQLRGLSLKYNNLEGSIPYDL----CH-LKLMYGIRLTGNKLS 186 (524)
Q Consensus 143 ~~----~~~l-~~L~~L~L~~n~i~~~~~~~~----~~-l~~L~~L~l~~n~l~ 186 (524)
.. +..+ ++|++|++++|.+++..+..+ .. .++|+.|++++|.+.
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 32 2222 455555555555543333222 12 134555555555444
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-25 Score=223.37 Aligned_cols=265 Identities=17% Similarity=0.205 Sum_probs=169.9
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCC---CCCChhHhc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLG---GILPPVIGN 98 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~ 98 (524)
|+...++...+. .++..+..+++|++|+|++|.++.... ..+ ...+.++++|++|+|++|.+. +.+|..+..
T Consensus 11 L~~~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l--~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~ 85 (386)
T 2ca6_A 11 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAA--RWL--SENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85 (386)
T ss_dssp CEESSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHH--HHH--HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH
T ss_pred cccCCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHH--HHH--HHHHHhCCCccEEeCcccccCccccchhHHHHH
Confidence 333334444443 466677778888888888888765311 001 134667888888888886443 334444422
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcc----cCCccccCCCCCCeEecccCcccccCCcc----cc
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG----TISPTMGRLKQLRGLSLKYNNLEGSIPYD----LC 170 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~ 170 (524)
+ ...+..+++|++|+|++|.++. .++..+..+++|++|+|++|.++...+.. +.
T Consensus 86 l------------------~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 147 (386)
T 2ca6_A 86 L------------------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147 (386)
T ss_dssp H------------------HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred H------------------HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHH
Confidence 1 1234556666666666666664 24445566666666666666665332222 22
Q ss_pred CC---------CCCCEEEccCCccc-ccCC---ccccCCCCCCEEEccCCcCCC-----ccChhccCCCCCCEEEcCCCc
Q 040301 171 HL---------KLMYGIRLTGNKLS-GHIP---PCLASLTSLRELHLGSNKLTS-----SIPSSLWSLEYILMINLSSNS 232 (524)
Q Consensus 171 ~l---------~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~ 232 (524)
.+ ++|+.|++++|++. ...+ ..+..+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.
T Consensus 148 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred HHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 23 67777777777765 2233 345567777888887777762 233366777888888888887
Q ss_pred Cc----ccCCcCccCCCCCCEEEcCCCcCccc-----cccc--cccCCCCEEEccCCcccC----CCcccc-cCCCCCCE
Q 040301 233 LN----DSLPSNIQTLKVLRVLDLSRNQLSGD-----ISTI--GALVDLETLSLASNQFQG----PIPESV-GSLISLES 296 (524)
Q Consensus 233 l~----~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~--~~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~ 296 (524)
++ ..+|..+..+++|+.|++++|.+++. +..+ +.+++|+.|+|++|++++ .+|..+ .++++|+.
T Consensus 228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 75 45666777788888888888887654 2334 337888888888888886 366666 56789999
Q ss_pred EeCCCCcCCCCCc
Q 040301 297 LDLSGNNLSGKIP 309 (524)
Q Consensus 297 L~l~~N~l~~~~~ 309 (524)
|++++|.+++..+
T Consensus 308 L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 308 LELNGNRFSEEDD 320 (386)
T ss_dssp EECTTSBSCTTSH
T ss_pred EEccCCcCCcchh
Confidence 9999999886663
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=202.40 Aligned_cols=223 Identities=19% Similarity=0.202 Sum_probs=130.9
Q ss_pred CCCEEEccCCCCCCCCCh---hHhcCcccccEEEeccCcccccCCccc--cCCCCCCeEEcccCcCcccCC----ccccC
Q 040301 77 HLKALSLGSNPLGGILPP---VIGNFSASFQNFYAFNCKLKGNIPQEI--GNLRGLTLLSLFNNDLNGTIS----PTMGR 147 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~ 147 (524)
.++.|.+.++.+....-. .+.... +|++|++++|.+.+..|..+ .++++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 467777777776532111 111222 57777777777777777666 677777777777777775433 23345
Q ss_pred CCCCCeEecccCcccccCCccccCCCCCCEEEccCCccccc--C--CccccCCCCCCEEEccCCcCCCccCh----hccC
Q 040301 148 LKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGH--I--PPCLASLTSLRELHLGSNKLTSSIPS----SLWS 219 (524)
Q Consensus 148 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~ 219 (524)
+++|++|++++|.+++..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|+++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 67777777777777766666777777777777777765431 1 2223556677777777777652 222 2455
Q ss_pred CCCCCEEEcCCCcCcccCCcCccCC---CCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCE
Q 040301 220 LEYILMINLSSNSLNDSLPSNIQTL---KVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLES 296 (524)
Q Consensus 220 l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 296 (524)
+++|++|+|++|.+.+..|..+..+ ++|++|++++|.++..+..+. ++|+.|+|++|++++. |. +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 6677777777777766555555444 456666666665554443332 4555555555555532 22 344455555
Q ss_pred EeCCCCcCC
Q 040301 297 LDLSGNNLS 305 (524)
Q Consensus 297 L~l~~N~l~ 305 (524)
|++++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 555555544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=193.35 Aligned_cols=195 Identities=18% Similarity=0.184 Sum_probs=103.4
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCc-ccccCCccccCCCCCCeEEccc-CcCcccCCccccCCCCCCeE
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCK-LKGNIPQEIGNLRGLTLLSLFN-NDLNGTISPTMGRLKQLRGL 154 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 154 (524)
+|++|++++|++++..+..|..+. +|+.|++++|. ++...+..|.++++|++|++++ |+++...+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666666655555555555 66666666664 5544555566666666666665 66655555555566666666
Q ss_pred ecccCcccccCCccccCCCCCC---EEEccCC-cccccCCccccCCCCCC-EEEccCCcCCCccChhccCCCCCCEEEcC
Q 040301 155 SLKYNNLEGSIPYDLCHLKLMY---GIRLTGN-KLSGHIPPCLASLTSLR-ELHLGSNKLTSSIPSSLWSLEYILMINLS 229 (524)
Q Consensus 155 ~L~~n~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 229 (524)
++++|.+++ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ .|++++|.++ .+|..
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~------------- 174 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY------------- 174 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT-------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh-------------
Confidence 666666553 343 44555554 5555555 55444444444555555 5555555544 22222
Q ss_pred CCcCcccCCcCccCCCCCCEEEcCCCc-Ccccc-cccccc-CCCCEEEccCCcccCCCcccccCCCCCCEEeCCCC
Q 040301 230 SNSLNDSLPSNIQTLKVLRVLDLSRNQ-LSGDI-STIGAL-VDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302 (524)
Q Consensus 230 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 302 (524)
.+.. ++|+.|++++|. +++.+ ..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 175 ----------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 ----------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ----------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred ----------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 2222 445555555552 44433 334444 555555555555553 3322 4455666666554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=203.13 Aligned_cols=211 Identities=20% Similarity=0.296 Sum_probs=110.4
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
++..+.+..+++++.. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..+ +..+.
T Consensus 20 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l----------~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~ 85 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI----------EGVQYLNNLIGLELKDNQITDLAP--LKNLT 85 (308)
T ss_dssp HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GTTCC
T ss_pred HHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc----------hhhhccCCCCEEEccCCcCCCChh--HccCC
Confidence 3444455555555332 245567777777777776654 335556677777777777664332 44444
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|.+.+. ..+..+++|+.|++++|++++.. .+..+++|++|++++|.+++..+
T Consensus 86 -~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-------------- 146 (308)
T 1h6u_A 86 -KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP-------------- 146 (308)
T ss_dssp -SCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--------------
T ss_pred -CCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--------------
Confidence 555555555555432 23555555555555555554321 24555555555555555543221
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 147 ------------l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 147 ------------LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp ------------GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred ------------ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 44444555555555544432 11 4445555555555555543221 44555555555555555544
Q ss_pred cccccccCCCCEEEccCCccc
Q 040301 261 ISTIGALVDLETLSLASNQFQ 281 (524)
Q Consensus 261 ~~~~~~l~~L~~L~L~~N~l~ 281 (524)
+ .+..+++|+.|++++|+++
T Consensus 211 ~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 211 S-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp G-GGTTCTTCCEEEEEEEEEE
T ss_pred c-cccCCCCCCEEEccCCeee
Confidence 4 2455556666666666655
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-25 Score=214.98 Aligned_cols=250 Identities=20% Similarity=0.223 Sum_probs=201.9
Q ss_pred CCCCEEEccCCCCCCCCChhHhcC--cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCccc-CCccccCCCCCC
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNF--SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT-ISPTMGRLKQLR 152 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 152 (524)
..++.||+++|.+. +..+..+ . +++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~-~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQ-GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHT-TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC---HHHHHhhhhc-cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34789999998877 4556655 4 899999999999876665 56799999999999998865 677888999999
Q ss_pred eEecccCcccccCCccccCCCCCCEEEccCC-ccccc-CCccccCCCCCCEEEccCC-cCCCc-cChhccCCC-CCCEEE
Q 040301 153 GLSLKYNNLEGSIPYDLCHLKLMYGIRLTGN-KLSGH-IPPCLASLTSLRELHLGSN-KLTSS-IPSSLWSLE-YILMIN 227 (524)
Q Consensus 153 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~ 227 (524)
+|++++|.+++..+..+..+++|+.|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999999999888888999999999999999 57653 5666888999999999999 88754 567788899 999999
Q ss_pred cCCC--cCc-ccCCcCccCCCCCCEEEcCCCc-Ccc-ccccccccCCCCEEEccCCc-ccCCCcccccCCCCCCEEeCCC
Q 040301 228 LSSN--SLN-DSLPSNIQTLKVLRVLDLSRNQ-LSG-DISTIGALVDLETLSLASNQ-FQGPIPESVGSLISLESLDLSG 301 (524)
Q Consensus 228 L~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 301 (524)
+++| .++ +.++..+..+++|++|++++|. +++ .+..+..+++|+.|++++|. +.......+..+++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 9999 454 3466677889999999999999 554 34778899999999999995 3322223578899999999999
Q ss_pred CcCCCCCcccccCC-CCCCeEEccCCcCccccCC
Q 040301 302 NNLSGKIPKSLETL-SHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 302 N~l~~~~~~~~~~l-~~L~~l~l~~n~l~~~~~~ 334 (524)
| ++.. .+..+ .+++.|++++|.+++..+.
T Consensus 282 ~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 282 I-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp S-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred c-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 9 5432 23333 2366777899999987654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-25 Score=218.76 Aligned_cols=239 Identities=17% Similarity=0.216 Sum_probs=183.4
Q ss_pred ChhHhcCcccccEEEeccCccccc----CCccccCCCCCCeEEcccCc---CcccCCccc-------cCCCCCCeEeccc
Q 040301 93 PPVIGNFSASFQNFYAFNCKLKGN----IPQEIGNLRGLTLLSLFNND---LNGTISPTM-------GRLKQLRGLSLKY 158 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~L~~ 158 (524)
+..+..++ +|+.|++++|.++.. ++..+..+++|++|+|++|. +.+..|..+ ..+++|++|+|++
T Consensus 25 ~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 25 FAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33444443 455555555554433 22336678889999988864 444444444 7899999999999
Q ss_pred Ccccc----cCCccccCCCCCCEEEccCCcccccCCccc----cCC---------CCCCEEEccCCcCC-CccC---hhc
Q 040301 159 NNLEG----SIPYDLCHLKLMYGIRLTGNKLSGHIPPCL----ASL---------TSLRELHLGSNKLT-SSIP---SSL 217 (524)
Q Consensus 159 n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~l~~n~l~-~~~~---~~~ 217 (524)
|.++. .++..+..+++|+.|++++|.+....+..+ ..+ ++|++|++++|.+. ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99997 477788999999999999999875443333 333 89999999999997 3344 467
Q ss_pred cCCCCCCEEEcCCCcCcc-----cCCcCccCCCCCCEEEcCCCcCc-----cccccccccCCCCEEEccCCcccCC----
Q 040301 218 WSLEYILMINLSSNSLND-----SLPSNIQTLKVLRVLDLSRNQLS-----GDISTIGALVDLETLSLASNQFQGP---- 283 (524)
Q Consensus 218 ~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~l~~L~~L~L~~N~l~~~---- 283 (524)
..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++ ..+..+..+++|+.|+|++|++.+.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 788999999999999873 24447889999999999999995 2346778899999999999999865
Q ss_pred Cccccc--CCCCCCEEeCCCCcCCC----CCcccc-cCCCCCCeEEccCCcCcccc
Q 040301 284 IPESVG--SLISLESLDLSGNNLSG----KIPKSL-ETLSHLKQFNASHNRLEGKI 332 (524)
Q Consensus 284 ~~~~~~--~l~~L~~L~l~~N~l~~----~~~~~~-~~l~~L~~l~l~~n~l~~~~ 332 (524)
++..+. .+++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 456663 38999999999999997 477777 66899999999999987643
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=189.64 Aligned_cols=179 Identities=21% Similarity=0.202 Sum_probs=107.8
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
++.+.+|+++++++ .+|..+. ++|++|+|++|+++.+.. ..+.++++|++|+|++|.+.+..+..|..+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 82 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSD--------ATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCH--------hHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence 45677888888887 6666554 477888888887776543 567777777777777777776665555555
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
. +|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 83 ~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 T-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp T-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred C-cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 5 566666666666555555555566666666666666554444455555555555555555544444455555555555
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCC
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLT 210 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 210 (524)
+++|++.+..+..+..+++|+.|++++|.+.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5555554444444444455555555555443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-23 Score=199.61 Aligned_cols=227 Identities=19% Similarity=0.192 Sum_probs=172.0
Q ss_pred CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH--hcCcccccEEEeccCcccccCC----
Q 040301 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI--GNFSASFQNFYAFNCKLKGNIP---- 118 (524)
Q Consensus 45 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~---- 118 (524)
.++.|.+.++.++.... .....+..+++|++|++++|.+.+..|..+ ..+. +|++|++++|.+.+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLL-----VGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp CCCEEEECSCCCBHHHH-----HHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHH
T ss_pred ceeEEEEeCCcCCHHHH-----HHHHHhcccCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHH
Confidence 46777777776653210 000112234668888888888888887776 6676 88888898888886555
Q ss_pred ccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccccc--C--CccccCCCCCCEEEccCCcccccCCc---
Q 040301 119 QEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGS--I--PYDLCHLKLMYGIRLTGNKLSGHIPP--- 191 (524)
Q Consensus 119 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~--- 191 (524)
..+..+++|++|++++|++.+..+..++.+++|++|++++|++.+. + +..+..+++|++|++++|+++. ++.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 217 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA 217 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH
Confidence 3456788999999999999888888888999999999999987642 2 2334678899999999998863 222
Q ss_pred -cccCCCCCCEEEccCCcCCCccChhccCC---CCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccccccccc
Q 040301 192 -CLASLTSLRELHLGSNKLTSSIPSSLWSL---EYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGAL 267 (524)
Q Consensus 192 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l 267 (524)
.+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|++. .+|..+. ++|+.|++++|++++.+. +..+
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l 293 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDEL 293 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSC
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhC
Confidence 24678899999999999987767666665 68999999999998 5676664 799999999999987643 6778
Q ss_pred CCCCEEEccCCcccC
Q 040301 268 VDLETLSLASNQFQG 282 (524)
Q Consensus 268 ~~L~~L~L~~N~l~~ 282 (524)
++|+.|+|++|+++.
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 899999999999874
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=186.08 Aligned_cols=180 Identities=21% Similarity=0.220 Sum_probs=98.9
Q ss_pred CCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040301 126 GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205 (524)
Q Consensus 126 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 205 (524)
..+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456677776666 3333332 466666666666665555556666666666666666665555555556666666666
Q ss_pred CCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCc
Q 040301 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIP 285 (524)
Q Consensus 206 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 285 (524)
+|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.+ +
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------~ 148 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-----------------------A 148 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------T
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-----------------------H
Confidence 66655444445555555555555555555444444444555555555555444433 3
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccc
Q 040301 286 ESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 286 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
..+..+++|+.|++++|++++..+..+..+++|+.+++++|++++.
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 3444555555555555555544444455555555555555555443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=194.04 Aligned_cols=192 Identities=27% Similarity=0.383 Sum_probs=99.8
Q ss_pred CCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 040301 124 LRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203 (524)
Q Consensus 124 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 203 (524)
+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+. + .+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 44444444444444421 2 34444444444444444442222 44445555555555544422 2 344555555555
Q ss_pred ccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCC
Q 040301 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGP 283 (524)
Q Consensus 204 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~ 283 (524)
+++|.+.+. + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.+. +..+++|+.|++++|++++.
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC
Confidence 555555432 2 25555555555555555553222 5555566666666665554433 55556666666666666543
Q ss_pred CcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcc
Q 040301 284 IPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 284 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 330 (524)
.+ +..+++|+.|++++|++++.. .+..+++|+.+++++|++++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 22 556666666666666666433 25666666666666666654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-22 Score=196.32 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=130.7
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC-hhHhcCcc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP-PVIGNFSA 101 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ 101 (524)
++++.++++++ .+|..+ .+++++|+|++|+|+.++. ..|.++++|++|+|++|++.+.+| ..|..+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~--------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~- 79 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQK--------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLP- 79 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECT--------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCH--------HHHcCCCCCCEEECcCCCCCCccChhHhhcch-
Confidence 67899999998 788776 3589999999999998765 678999999999999999865544 4556665
Q ss_pred cccE-EEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEeccc-CcccccCCccccCCC-CCCEE
Q 040301 102 SFQN-FYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKY-NNLEGSIPYDLCHLK-LMYGI 178 (524)
Q Consensus 102 ~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~-~L~~L 178 (524)
++.+ +.+..|++....|..|.++++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 4443 55556777766677777777777777777777766555555666666666644 445544444455443 45566
Q ss_pred EccCCcccccCCccccCCCCCCEEEccC-CcCCCccChhccCCCCCCEEEcCCCcCcc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGS-NKLTSSIPSSLWSLEYILMINLSSNSLND 235 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 235 (524)
++++|+++...+. .....+|+.|++.+ |.++...++.|..+++|+.|++++|+++.
T Consensus 160 ~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 160 WLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp ECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ccccccccCCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 6666666533332 22344566666643 44443333445556666666666666653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-24 Score=229.32 Aligned_cols=323 Identities=11% Similarity=0.047 Sum_probs=163.6
Q ss_pred CccEEEccCCc-ccc-cCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC----CCh
Q 040301 21 IYWVMDLSSNS-FSG-HIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI----LPP 94 (524)
Q Consensus 21 ~l~~Ldls~n~-l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~ 94 (524)
+|++|+|++|. ++. .++....++++|++|+|++|.+++... ..++ ....++++|++|++++|.+.+. ++.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~l~--~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 214 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG--KWLH--ELAQHNTSLEVLNFYMTEFAKISPKDLET 214 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCS--HHHH--HHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcch--hHHH--HHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence 47777777665 221 122222356677777777776644210 0011 2234556666666666666522 233
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcC--------------------------cccCCccccCC
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDL--------------------------NGTISPTMGRL 148 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------------------------~~~~~~~~~~l 148 (524)
.+..++ +|+.|++++|.+.+ +|..+.++++|+.|+++++.. ...+|..+..+
T Consensus 215 ~~~~~~-~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 215 IARNCR-SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp HHHHCT-TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred HHhhCC-CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 334444 66666666666553 344455555555555543211 11233344455
Q ss_pred CCCCeEecccCcccccCC-ccccCCCCCCEEEccCCccc-ccCCccccCCCCCCEEEccC-----------CcCCCc-cC
Q 040301 149 KQLRGLSLKYNNLEGSIP-YDLCHLKLMYGIRLTGNKLS-GHIPPCLASLTSLRELHLGS-----------NKLTSS-IP 214 (524)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~-----------n~l~~~-~~ 214 (524)
++|++|++++|.+++... ..+..+++|+.|+++ +.+. +.++..+..+++|+.|++++ |.++.. ++
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 566666666666543322 224555666666665 2222 12222234456666666662 334322 12
Q ss_pred hhccCCCCCCEEEcCCCcCcccCCcCccC-CCCCCEEEcC----CCcCcccc------ccccccCCCCEEEccCCc--cc
Q 040301 215 SSLWSLEYILMINLSSNSLNDSLPSNIQT-LKVLRVLDLS----RNQLSGDI------STIGALVDLETLSLASNQ--FQ 281 (524)
Q Consensus 215 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~------~~~~~l~~L~~L~L~~N~--l~ 281 (524)
..+..+++|+.|+++.|.+++..+..+.. +++|+.|+++ .|.+++.+ ..+..+++|+.|++++|. ++
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 22344666666666666665544444433 6666776664 45555432 224456666666665432 44
Q ss_pred CCCcccc-cCCCCCCEEeCCCCcCCC-CCcccccCCCCCCeEEccCCcCccccCC--CCcCCCCCcccccCCC
Q 040301 282 GPIPESV-GSLISLESLDLSGNNLSG-KIPKSLETLSHLKQFNASHNRLEGKILV--KGSFKNFSAESFFGNY 350 (524)
Q Consensus 282 ~~~~~~~-~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~l~l~~n~l~~~~~~--~~~~~~~~~~~~~~n~ 350 (524)
+..+..+ ..+++|+.|++++|.+++ .++..+..+++|+.|++++|++++.... ...+..+..+++.+|.
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 3333333 236667777777777664 2334445667777777777766533111 1224455555555554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-24 Score=224.34 Aligned_cols=306 Identities=15% Similarity=0.111 Sum_probs=226.3
Q ss_pred CCccEEEccCCccccc----CCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChh
Q 040301 20 QIYWVMDLSSNSFSGH----IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPV 95 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 95 (524)
++|++|+|++|.+++. ++..+.++++|++|++++|.++.+.. +.++ ..+.++++|++|++++|.+.+ +|..
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~--~~l~--~~~~~~~~L~~L~L~~~~~~~-l~~~ 238 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP--KDLE--TIARNCRSLVSVKVGDFEILE-LVGF 238 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH--HHHH--HHHHHCTTCCEEECSSCBGGG-GHHH
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH--HHHH--HHHhhCCCCcEEeccCccHHH-HHHH
Confidence 7899999999998866 33345678999999999999874321 1222 445678999999999998875 5677
Q ss_pred HhcCcccccEEEeccCcc--------------------------cccCCccccCCCCCCeEEcccCcCcccCC-ccccCC
Q 040301 96 IGNFSASFQNFYAFNCKL--------------------------KGNIPQEIGNLRGLTLLSLFNNDLNGTIS-PTMGRL 148 (524)
Q Consensus 96 ~~~~~~~L~~L~l~~n~l--------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l 148 (524)
+..++ +|++|+++.+.. ...+|..+..+++|++|++++|.+++... ..+..+
T Consensus 239 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 239 FKAAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317 (592)
T ss_dssp HHHCT-TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC
T ss_pred Hhhhh-HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC
Confidence 77776 888888764211 23456667788999999999999765433 346889
Q ss_pred CCCCeEecccCcccccCCccccCCCCCCEEEccC-----------Cccccc-CCccccCCCCCCEEEccCCcCCCccChh
Q 040301 149 KQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG-----------NKLSGH-IPPCLASLTSLRELHLGSNKLTSSIPSS 216 (524)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 216 (524)
++|++|+++++-..+.++..+..+++|+.|++++ |.+++. ++.....+++|+.|++..|.+++..+..
T Consensus 318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 9999999994333333444557789999999993 555533 2223456899999999888888766666
Q ss_pred ccC-CCCCCEEEcC----CCcCccc-----CCcCccCCCCCCEEEcCCCc--Ccccc-ccc-cccCCCCEEEccCCcccC
Q 040301 217 LWS-LEYILMINLS----SNSLNDS-----LPSNIQTLKVLRVLDLSRNQ--LSGDI-STI-GALVDLETLSLASNQFQG 282 (524)
Q Consensus 217 ~~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~-~~~-~~l~~L~~L~L~~N~l~~ 282 (524)
+.. +++|+.|+++ .|.+++. ++..+..+++|+.|+++++. +++.. ..+ ..+++|+.|++++|++++
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 655 8999999996 6677653 22336678999999997543 54433 333 347899999999999886
Q ss_pred -CCcccccCCCCCCEEeCCCCcCCCC-CcccccCCCCCCeEEccCCcCccc
Q 040301 283 -PIPESVGSLISLESLDLSGNNLSGK-IPKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 283 -~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
.++..+..+++|+.|++++|.+++. ++..+..+++|+.|++++|+++..
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 3455568899999999999998754 344556789999999999998754
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=172.65 Aligned_cols=162 Identities=24% Similarity=0.210 Sum_probs=98.6
Q ss_pred CCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 040301 125 RGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204 (524)
Q Consensus 125 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 204 (524)
++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666666555555666666666666666666444445556666666666666666544445566666666666
Q ss_pred cCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCC
Q 040301 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPI 284 (524)
Q Consensus 205 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~ 284 (524)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +.+++|+.|++..|++++.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCcee
Confidence 666666554455566666666666666666544445666666666666666543 23455666666666666666
Q ss_pred cccccCCC
Q 040301 285 PESVGSLI 292 (524)
Q Consensus 285 ~~~~~~l~ 292 (524)
|..++.++
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 66555443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=185.33 Aligned_cols=221 Identities=16% Similarity=0.098 Sum_probs=99.8
Q ss_pred CCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCC-ccccCCCCCCe-EEcccCcCcccCCccccCCCCCCe
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIP-QEIGNLRGLTL-LSLFNNDLNGTISPTMGRLKQLRG 153 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~ 153 (524)
+++++|+|++|+|+.+.+..|..+. +|+.|++++|++.+.+| ..|.++++|++ +.+.+|++..+.|..|..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 3455555555555544444444444 45555555554433222 23444444443 333344444444444444555555
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC-CcCCCccChhccCCC-CCCEEEcCCC
Q 040301 154 LSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGS-NKLTSSIPSSLWSLE-YILMINLSSN 231 (524)
Q Consensus 154 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~L~~n 231 (524)
|++++|.++ ...+..+....++..+++.+ +.+....+..|..+. .++.|++++|
T Consensus 109 L~l~~n~l~------------------------~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 109 LLISNTGIK------------------------HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEEEECCS------------------------SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred ccccccccc------------------------cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 555555444 33333333333444444433 333322223333332 3455555555
Q ss_pred cCcccCCcCccCCCCCCEEEcC-CCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCc
Q 040301 232 SLNDSLPSNIQTLKVLRVLDLS-RNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 309 (524)
Q Consensus 232 ~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 309 (524)
++.. ++.......+|+.|+++ +|.++.++ ..+..+++|+.|+|++|+++...+.. +.+|+.|.+.++.-...+|
T Consensus 165 ~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 165 GIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp CCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC
T ss_pred cccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC
Confidence 5543 22222233445555554 24444444 33455555556666665555322222 3344444444333222444
Q ss_pred ccccCCCCCCeEEccCC
Q 040301 310 KSLETLSHLKQFNASHN 326 (524)
Q Consensus 310 ~~~~~l~~L~~l~l~~n 326 (524)
.+..+++|+.+++.++
T Consensus 241 -~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 -TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CTTTCCSCCEEECSCH
T ss_pred -CchhCcChhhCcCCCC
Confidence 2555666666666543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-21 Score=172.79 Aligned_cols=178 Identities=21% Similarity=0.183 Sum_probs=96.7
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.++++++.++ .+|..+ .++|++|++++|+++.++. ..+.++++|++|++++|.+.+..+..|..+. +
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~ 77 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPN--------GVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-S 77 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCT--------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-T
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCCh--------hhhcccccCcEEECCCCccCccChhhcCCCC-C
Confidence 45666666666 445443 3466777777776665432 4456666666666666666654444445554 5
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccC
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG 182 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 182 (524)
|+.|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 55555555555544444455555555555555555554444455555555555555555544444445555555555555
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCCCccChhccC
Q 040301 183 NKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWS 219 (524)
Q Consensus 183 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 219 (524)
|.+.+ .+++|+.|++..|.+++.+|..+..
T Consensus 158 N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 158 NPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 54331 2234444445555555444444433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=192.96 Aligned_cols=184 Identities=25% Similarity=0.294 Sum_probs=106.7
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
+|+.|+|++|.+++ +|..+. . +|+.|++++|.++ .+| ..+++|+.|++++|++++ +|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 78888888888876 444332 3 6777777777776 455 346777777777777775 444 443 7777777
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc
Q 040301 157 KYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236 (524)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (524)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|+|++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 7777764 444 45666677777766664 343 35566666666666664 444 33 56666666666665 3
Q ss_pred CCcCccCCCCC-------CEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccc
Q 040301 237 LPSNIQTLKVL-------RVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESV 288 (524)
Q Consensus 237 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 288 (524)
+|. +.. +| +.|++++|.++.++..+..+++|+.|+|++|++++.+|..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 444 332 34 44555555444444434444444444444444444444433
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=198.20 Aligned_cols=192 Identities=22% Similarity=0.304 Sum_probs=144.1
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.++..++++.+.+++..+ +..+++|+.|++++|.+..+ ..+..+++|+.|+|++|.+.+..| +..+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l----------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l 86 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV----------QGIQYLPNVTKLFLNGNKLTDIKP--LTNL 86 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC----------TTGGGCTTCCEEECTTSCCCCCGG--GGGC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC----------hHHccCCCCCEEEeeCCCCCCChh--hccC
Confidence 456667778877775443 56788888999988888765 356778888899998888886554 7777
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
. +|+.|+|++|.+.+ +| .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+
T Consensus 87 ~-~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 87 K-NLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp T-TCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred C-CCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 6 88888888888874 23 577888888888888888753 4577788888888888888754 5677788888888
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (524)
|++|.+.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88888775544 77778888888888877643 3577777888888888777653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-22 Score=211.61 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCccEEEccCCcccccCCcccc-cccCCCEEEcccc-ccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFG-NLRHLSSLLLTWN-NLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
++|+.|+|++|.+++..+..+. .+++|++|+|++| .++... ++ ..+.++++|++|+|++|.+++..+..+.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~-----l~--~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG-----LA--AIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH-----HH--HHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH-----HH--HHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 5788888888887766666664 5777888888777 443210 11 2233566777777777776554433333
Q ss_pred ----cCcccccEEEeccCc--ccc-cCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 98 ----NFSASFQNFYAFNCK--LKG-NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 98 ----~~~~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
.++ +|+.|++++|. +.. .++..+.++++|++|++++|.....++..+..+++|++|++
T Consensus 178 ~~~~~~~-~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 178 HFPDTYT-SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp GSCTTCC-CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred HHhhcCC-cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 233 66777776665 211 11112234566667766666221123333444444444443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-21 Score=182.25 Aligned_cols=191 Identities=24% Similarity=0.349 Sum_probs=100.8
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
++..+++..+.+++.. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..+ +..+.
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~----------~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~ 90 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV----------QGIQYLPNVTKLFLNGNKLTDIKP--LANLK 90 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC----------hhHhcCCCCCEEEccCCccCCCcc--cccCC
Confidence 3444455555555332 244566677777777766654 234556666666666666664332 44443
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|.+.+ + ..+..+++|++|++++|++.+. ..+..+++|+.|++
T Consensus 91 -~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--------------------------~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 91 -NLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--------------------------NGLVHLPQLESLYL 141 (291)
T ss_dssp -TCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--------------------------GGGGGCTTCCEEEC
T ss_pred -CCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--------------------------hhhcCCCCCCEEEc
Confidence 44555555444442 1 1244444444444444444432 23444455555555
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+...
T Consensus 142 ~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred cCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 55555432 345555566666666666554322 5556666666666666654 22 255666666666666666543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=186.88 Aligned_cols=188 Identities=23% Similarity=0.296 Sum_probs=149.4
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+++.|++++|.+++ +|..+ +++|+.|++++|+++ .+| ..+++|+.|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78899999999886 66655 378999999999998 455 457889999999999986 666 655 89999999
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 261 (524)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++.++
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchh
Confidence 999886 555 57889999999999885 555 56889999999999886 666 65 88999999999988766
Q ss_pred ccccccCCC-------CEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 040301 262 STIGALVDL-------ETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 316 (524)
Q Consensus 262 ~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 316 (524)
. +.. +| +.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 6 443 66 88999999888 5777777788999999999999888887776643
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-22 Score=209.62 Aligned_cols=324 Identities=14% Similarity=0.111 Sum_probs=206.4
Q ss_pred CCCccEEEccCC-ccccc-CCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCC--CCCC-CC
Q 040301 19 HQIYWVMDLSSN-SFSGH-IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNP--LGGI-LP 93 (524)
Q Consensus 19 ~~~l~~Ldls~n-~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~-~~ 93 (524)
.++|+.|++++| .+++. ++..+.++++|++|+|++|.+++... ..++ .....+++|++|++++|. +... ++
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~--~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG--HWLS--HFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG--GGGG--GSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch--HHHH--HHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 379999999999 66643 44445689999999999999776421 0111 333477899999999997 2211 12
Q ss_pred hhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCc--------------------------Ccc----cCCc
Q 040301 94 PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNND--------------------------LNG----TISP 143 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--------------------------l~~----~~~~ 143 (524)
..+..++ +|+.|++++|.....++..+..+++|+.|+++.+. +.. .++.
T Consensus 205 ~l~~~~~-~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 205 RLVTRCP-NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHHHHCT-TCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHHHhCC-CCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 2223345 89999999983322366667777788888755442 111 1222
Q ss_pred cccCCCCCCeEecccCcccccCC-ccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEEccC---------CcCCCc
Q 040301 144 TMGRLKQLRGLSLKYNNLEGSIP-YDLCHLKLMYGIRLTGNKLSGH-IPPCLASLTSLRELHLGS---------NKLTSS 212 (524)
Q Consensus 144 ~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~ 212 (524)
.+..+++|++|++++|.+++... ..+..+++|+.|++++| +... ++.....+++|+.|++.+ +.++..
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 23357889999999998764332 33567889999999887 4322 222233578888888833 344432
Q ss_pred cChhc-cCCCCCCEEEcCCCcCcccCCcCcc-CCCCCCEEEcC--C----CcCcccc------ccccccCCCCEEEccCC
Q 040301 213 IPSSL-WSLEYILMINLSSNSLNDSLPSNIQ-TLKVLRVLDLS--R----NQLSGDI------STIGALVDLETLSLASN 278 (524)
Q Consensus 213 ~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~------~~~~~l~~L~~L~L~~N 278 (524)
....+ ..+++|+.|.+..|.+++.....+. .+++|+.|+++ + +.+++.+ ..+..+++|+.|++++
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence 22222 3478888888887877654444443 47888888888 3 5555322 2255677888888876
Q ss_pred cccCCCcccccC-CCCCCEEeCCCCcCCCCCcccc-cCCCCCCeEEccCCcCccccC--CCCcCCCCCcccccCC
Q 040301 279 QFQGPIPESVGS-LISLESLDLSGNNLSGKIPKSL-ETLSHLKQFNASHNRLEGKIL--VKGSFKNFSAESFFGN 349 (524)
Q Consensus 279 ~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~l~l~~n~l~~~~~--~~~~~~~~~~~~~~~n 349 (524)
.+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++... ....+..+..+++.++
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 555544444544 7788888888888865544444 567888888888888754322 1223455566665555
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=164.30 Aligned_cols=151 Identities=19% Similarity=0.282 Sum_probs=94.0
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.+++++++++ .+|..+. ++|++|++++|+++.++. ..|.++++|++|+|++|.+.+..|..|..+. +
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~--------~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~ 81 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPP--------GAFSPYKKLRRIDLSNNQISELAPDAFQGLR-S 81 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECT--------TSSTTCTTCCEEECCSSCCCEECTTTTTTCS-S
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCH--------hHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-C
Confidence 56788888887 6666554 578888888888776643 5677777788888877777766566666555 5
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccC
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG 182 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 182 (524)
|+.|++++|.++...+..|.++++|+.|+|++|++.+..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++
T Consensus 82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 66666666655544444455555555666555555555555555555555555555555544444455555555555555
Q ss_pred Ccc
Q 040301 183 NKL 185 (524)
Q Consensus 183 n~l 185 (524)
|.+
T Consensus 162 N~~ 164 (220)
T 2v9t_B 162 NPF 164 (220)
T ss_dssp SCE
T ss_pred CCc
Confidence 544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-20 Score=176.87 Aligned_cols=168 Identities=30% Similarity=0.359 Sum_probs=138.3
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+|+.|++++|.+... + .+..+++|+.|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 455555555555432 2 36677888888888888876544 7888888888888888875 33 48889999999999
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 261 (524)
+|++.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.+
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh
Confidence 9999854 4688999999999999999864 678999999999999999987544 889999999999999998765
Q ss_pred ccccccCCCCEEEccCCcccC
Q 040301 262 STIGALVDLETLSLASNQFQG 282 (524)
Q Consensus 262 ~~~~~l~~L~~L~L~~N~l~~ 282 (524)
.+..+++|+.|++++|++..
T Consensus 195 -~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 195 -ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GGTTCTTCSEEEEEEEEEEC
T ss_pred -hhccCCCCCEEECcCCcccC
Confidence 58889999999999999985
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=164.09 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=100.0
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.+++++|+++ .+|..+. ..+++|+|++|+++.+.. ...+.++++|++|+|++|.+++..+..|..+. +
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~ 82 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEA-------TGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-G 82 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECC-------CCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-T
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCc-------hhhhccCCCCCEEECCCCcCCEECHHHhCCCC-C
Confidence 57888888887 5676653 356788888888876531 03467778888888888887766665666665 6
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccC
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG 182 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 182 (524)
|+.|++++|.+++..+..|.++++|++|+|++|++.+..|..|..+++|+.|+|++|.+++..|..|..+++|+.|++++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 66666666666655555566666666666666666655566666666666666666666655555555555555555555
Q ss_pred Cccc
Q 040301 183 NKLS 186 (524)
Q Consensus 183 n~l~ 186 (524)
|.+.
T Consensus 163 N~l~ 166 (220)
T 2v70_A 163 NPFN 166 (220)
T ss_dssp CCEE
T ss_pred cCCc
Confidence 5554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-20 Score=191.87 Aligned_cols=194 Identities=23% Similarity=0.311 Sum_probs=157.0
Q ss_pred ccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCcccc
Q 040301 43 LRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG 122 (524)
Q Consensus 43 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 122 (524)
+.++..+.+..+.+.++ ..+..+++|+.|++++|.+... + .+..+. +|+.|+|++|.+.+..+ +.
T Consensus 20 l~~l~~l~l~~~~i~~~----------~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~-~L~~L~Ls~N~l~~~~~--l~ 84 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDA----------VTQNELNSIDQIIANNSDIKSV-Q-GIQYLP-NVTKLFLNGNKLTDIKP--LT 84 (605)
T ss_dssp HHHHHHHHTTCSCTTSE----------ECHHHHTTCCCCBCTTCCCCCC-T-TGGGCT-TCCEEECTTSCCCCCGG--GG
T ss_pred HHHHHHHhccCCCcccc----------cchhcCCCCCEEECcCCCCCCC-h-HHccCC-CCCEEEeeCCCCCCChh--hc
Confidence 45666777777777654 3456778899999999999854 3 477777 99999999999986555 88
Q ss_pred CCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 040301 123 NLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLREL 202 (524)
Q Consensus 123 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 202 (524)
.+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|
T Consensus 85 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 158 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 158 (605)
T ss_dssp GCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE
T ss_pred cCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE
Confidence 999999999999999853 3688899999999999998853 4588889999999999998854 568888999999
Q ss_pred EccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc
Q 040301 203 HLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261 (524)
Q Consensus 203 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 261 (524)
+|++|.+.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.+
T Consensus 159 ~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 159 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred ECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 999998886655 88888999999999988763 35788889999999988887654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=162.44 Aligned_cols=154 Identities=22% Similarity=0.297 Sum_probs=105.7
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCc
Q 040301 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQ 256 (524)
Q Consensus 177 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 256 (524)
.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|+.|+|++|.+.+..|..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4455555554 3333332 456666666666665444566666666666666666666556667777777777777777
Q ss_pred Ccccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 257 LSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 257 l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
++..+ ..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++.|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 76665 345667777777777777777777778888888888888888887777778888888888888888877553
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=179.52 Aligned_cols=180 Identities=21% Similarity=0.164 Sum_probs=104.1
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCC-CCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALT-NCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
-+.+++++++++ .+|..+. ..++.|+|++|+++.++. ..+. ++++|++|+|++|.+.+..+..|..+.
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~--------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRA--------EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECT--------TSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccCh--------hhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 357888888887 5676553 357888888888877653 4555 777788888888877765555555554
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|++....+..|.++++|+.|+|++|++....+..|..+++|+.|+|++|.++...+..|..
T Consensus 89 -~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--------- 158 (361)
T 2xot_A 89 -NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD--------- 158 (361)
T ss_dssp -TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----------
T ss_pred -CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC---------
Confidence 5555555555555544445555555555555555555555555555555555555555554322222200
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCC--CCEEEcCCCcCc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEY--ILMINLSSNSLN 234 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~ 234 (524)
+..+++|+.|++++|.+....+..+..++. ++.|+|++|.+.
T Consensus 159 ------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 159 ------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ---------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ------------cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 034555566666666555433344555554 355666666654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=166.24 Aligned_cols=155 Identities=24% Similarity=0.270 Sum_probs=109.3
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCCccC-hhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCC
Q 040301 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP-SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRN 255 (524)
Q Consensus 177 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 255 (524)
.+++++|.++ .+|..+. ..++.|++++|.+++..+ ..|..+++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555555554 2343332 244666666666664433 34566777777777777776655666777777777777777
Q ss_pred cCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC
Q 040301 256 QLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 256 ~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 334 (524)
.+++.+ ..+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..+..+++|+.+++++|++.|.++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 777666 4567777888888888888877777888888888888888888877788888888888888888888876653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=177.40 Aligned_cols=179 Identities=24% Similarity=0.186 Sum_probs=103.6
Q ss_pred CeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCcccc-CCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 040301 128 TLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC-HLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGS 206 (524)
Q Consensus 128 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 206 (524)
+.++++++++.. +|..+. +.++.|+|++|.+++..+..+. .+++|+.|++++|++.+..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467777777763 343332 3467777777777765555555 666666666666666655555666666666666666
Q ss_pred CcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcc
Q 040301 207 NKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPE 286 (524)
Q Consensus 207 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 286 (524)
|.+....+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+++.+. .
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-----------------------~ 154 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-----------------------E 154 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-----------------------G
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-----------------------H
Confidence 66664444555666666666666666655555555555555555555555554432 2
Q ss_pred cc---cCCCCCCEEeCCCCcCCCCCcccccCCCC--CCeEEccCCcCcccc
Q 040301 287 SV---GSLISLESLDLSGNNLSGKIPKSLETLSH--LKQFNASHNRLEGKI 332 (524)
Q Consensus 287 ~~---~~l~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~l~l~~n~l~~~~ 332 (524)
.+ ..+++|+.|+|++|+++...+..+..++. ++.+++++|++.|.+
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 22 34555555555555555444444555544 255666666665543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-19 Score=161.13 Aligned_cols=154 Identities=16% Similarity=0.235 Sum_probs=109.6
Q ss_pred cccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCc
Q 040301 40 FGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQ 119 (524)
Q Consensus 40 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 119 (524)
...+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +..+..++ +|+.|++++|.+++..+.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l----------~~l~~l~~L~~L~l~~n~~~~--~~~l~~l~-~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDL----------TGIEYAHNIKDLTINNIHATN--YNPISGLS-NLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCC----------TTGGGCTTCSEEEEESCCCSC--CGGGTTCT-TCCEEEEECTTCBGGGSC
T ss_pred hhhcCCccEEeccCCCccCh----------HHHhcCCCCCEEEccCCCCCc--chhhhcCC-CCCEEEeECCccCcccCh
Confidence 45667777777777777654 235566777777777775542 23566665 777777777777766677
Q ss_pred cccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCc-ccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 040301 120 EIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNN-LEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTS 198 (524)
Q Consensus 120 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 198 (524)
.|+.+++|+.|++++|++++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+.+ ++ .+..+++
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~ 182 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPK 182 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSS
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCC
Confidence 77788888888888888877667777788888888888887 55 444 57778888888888888774 33 5777888
Q ss_pred CCEEEccCCcCC
Q 040301 199 LRELHLGSNKLT 210 (524)
Q Consensus 199 L~~L~l~~n~l~ 210 (524)
|+.|++++|++.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 888888888765
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=158.30 Aligned_cols=136 Identities=27% Similarity=0.288 Sum_probs=80.4
Q ss_pred CCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEc
Q 040301 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSL 275 (524)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L 275 (524)
++|+.|++++|.+.+..+..+..+++|+.|+|++|.+....+..|..+++|+.|++++|.+++.+ ..+..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45555555555555544555555555555555555555444444555556666666666655554 33455666666666
Q ss_pred cCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 276 ASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 276 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.+++++|++.|.++
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 666666 455666666666666666666665555556666667777777776666543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-18 Score=156.66 Aligned_cols=136 Identities=26% Similarity=0.251 Sum_probs=86.3
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEc
Q 040301 173 KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252 (524)
Q Consensus 173 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 252 (524)
++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44555555555555444555555555555555555555443444555666666666666666544555566666667777
Q ss_pred CCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCC
Q 040301 253 SRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308 (524)
Q Consensus 253 ~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 308 (524)
++|.++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 77766666666666777777777777777655566777888888888888877543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-19 Score=166.66 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=88.5
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
.++++.+++++|++++. + .+..+++|++|++++|+++.+ ..+..+++|++|++++|.+.+..+ +..
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l----------~~l~~l~~L~~L~L~~N~i~~~~~--l~~ 83 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL----------AGMQFFTNLKELHLSHNQISDLSP--LKD 83 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc----------hHHhhCCCCCEEECCCCccCCChh--hcc
Confidence 34566677777777633 3 466777777777777777654 345566777777777777764433 555
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
++ +|+.|++++|++++. |. +.. ++|+.|++++|++++. ..+..+++|+.|++++|++++. + .+..+++|+.|
T Consensus 84 l~-~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L 155 (263)
T 1xeu_A 84 LT-KLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL 155 (263)
T ss_dssp CS-SCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE
T ss_pred CC-CCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE
Confidence 54 555555555555432 21 111 4555555555555432 2344455555555555555432 1 34444444444
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCC
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLT 210 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 210 (524)
++++|++.+. ..+..+++|+.|++++|.+.
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 4444444432 23344444444444444433
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=154.37 Aligned_cols=154 Identities=17% Similarity=0.194 Sum_probs=125.1
Q ss_pred CCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCC
Q 040301 73 TNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLR 152 (524)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 152 (524)
+.+++|++|++++|.+. .+| .+..++ +|+.|++++|.+. .+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAH-NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCT-TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCC-CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 56678999999999988 445 577777 8999999999665 344788899999999999999877788888999999
Q ss_pred eEecccCcccccCCccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCC
Q 040301 153 GLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNK-LSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231 (524)
Q Consensus 153 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 231 (524)
+|++++|.+++..+..+..+++|+.|++++|. +. .++ .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 99999999988778888899999999999998 55 444 58888999999999998875 33 6788899999999999
Q ss_pred cCcc
Q 040301 232 SLND 235 (524)
Q Consensus 232 ~l~~ 235 (524)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-21 Score=198.16 Aligned_cols=217 Identities=22% Similarity=0.191 Sum_probs=128.3
Q ss_pred CCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCC
Q 040301 73 TNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLR 152 (524)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 152 (524)
..+++|+.|+|++|.+. .+|..++.+. +|++|++++|......|.. +..+...+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence 55677778888888776 5677777776 7777777665421111100 001112334444555555555
Q ss_pred eEe-cccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCC
Q 040301 153 GLS-LKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231 (524)
Q Consensus 153 ~L~-L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 231 (524)
.|+ ++.|.+. .|..+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|+|++|
T Consensus 413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 413 AVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred cCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence 555 4444332 22233444444442211 135666666666664 444 666666677777766
Q ss_pred cCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCC-cccccCCCCCCEEeCCCCcCCCCCcc
Q 040301 232 SLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPI-PESVGSLISLESLDLSGNNLSGKIPK 310 (524)
Q Consensus 232 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~ 310 (524)
.+. .+|..++.+++|+.|++++|.+++++ .++.+++|+.|+|++|++++.. |..+..+++|+.|++++|.+++..|.
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 666 46666667777777777777776655 6666777777777777777655 77777777777777777777755432
Q ss_pred ---cccCCCCCCeEEc
Q 040301 311 ---SLETLSHLKQFNA 323 (524)
Q Consensus 311 ---~~~~l~~L~~l~l 323 (524)
.+..+++|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 2233677777653
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-19 Score=166.07 Aligned_cols=80 Identities=26% Similarity=0.414 Sum_probs=32.8
Q ss_pred CCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCC
Q 040301 221 EYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 300 (524)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 300 (524)
++|+.|++++|.+.+ + ..+..+++|+.|++++|++++.+ .+..+++|+.|++++|++++. ..+..+++|+.|+++
T Consensus 106 ~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 344444444444432 1 12334444444444444443332 333344444444444444432 233444444444444
Q ss_pred CCcCC
Q 040301 301 GNNLS 305 (524)
Q Consensus 301 ~N~l~ 305 (524)
+|+++
T Consensus 181 ~N~~~ 185 (263)
T 1xeu_A 181 GQKCV 185 (263)
T ss_dssp EEEEE
T ss_pred CCccc
Confidence 44443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-21 Score=197.43 Aligned_cols=215 Identities=20% Similarity=0.158 Sum_probs=103.3
Q ss_pred ccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCcc
Q 040301 41 GNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQE 120 (524)
Q Consensus 41 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 120 (524)
..+++|+.|+|++|+++.++ ..++++++|+.|++++|......|.. + ..+...+..|..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp---------~~i~~l~~L~~L~l~~n~~l~~l~~l-------l-----~~~~~~~~~~~~ 404 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQ---------SELESCKELQELEPENKWCLLTIILL-------M-----RALDPLLYEKET 404 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHH---------HHHHHHHHHHHHCTTCHHHHHHHHHH-------H-----HHHCTGGGHHHH
T ss_pred ccCccceeccCChhhHHhhH---------HHHHHHHHHHHhccccchhhhhHHHH-------H-----HhcccccCCHHH
Confidence 45678888888888887543 67788888888888666411000100 0 011122334444
Q ss_pred ccCCCCCCeEE-cccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 040301 121 IGNLRGLTLLS-LFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199 (524)
Q Consensus 121 ~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 199 (524)
++++++|+.|+ ++.|.+. .|+.+++++|.++...+ ..|+.|++++|.+++ +|. +..+++|
T Consensus 405 l~~l~~L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L 465 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV 465 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC
T ss_pred HHHHHhcccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC
Confidence 44555555554 3333221 23333344444332111 124444444444442 233 4444455
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc--cccccccCCCCEEEccC
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD--ISTIGALVDLETLSLAS 277 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~L~~ 277 (524)
+.|++++|.++ .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|++++|.+++. +..+..+++|+.|+|++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 55555555444 344444455555555555555543 33 444555555555555555544 34455555555555555
Q ss_pred CcccCCCcc---cccCCCCCCEEe
Q 040301 278 NQFQGPIPE---SVGSLISLESLD 298 (524)
Q Consensus 278 N~l~~~~~~---~~~~l~~L~~L~ 298 (524)
|++++..|. .+..+++|+.|+
T Consensus 543 N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 543 NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcCCCCccHHHHHHHHCcccCccC
Confidence 555543221 122355555554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-18 Score=169.30 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=84.5
Q ss_pred CCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCC-EEEccCCcccCCCcccccCCCCCCEE
Q 040301 220 LEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLE-TLSLASNQFQGPIPESVGSLISLESL 297 (524)
Q Consensus 220 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L 297 (524)
+++|+.+++++|.+....+..|..+++|+.+++.+| +..+. ..|.++.+|+ .+++.+ .++...+..|..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 788899999988888777778888889999999887 66655 6788888898 898888 6776677888889999999
Q ss_pred eCCCCcCCCCCcccccCCCCCCeEEc
Q 040301 298 DLSGNNLSGKIPKSLETLSHLKQFNA 323 (524)
Q Consensus 298 ~l~~N~l~~~~~~~~~~l~~L~~l~l 323 (524)
++++|.++...+..|..+++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99888888777778888888888764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=144.41 Aligned_cols=135 Identities=21% Similarity=0.159 Sum_probs=109.9
Q ss_pred cCCCCccEEEccCCccc-ccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChh
Q 040301 17 IPHQIYWVMDLSSNSFS-GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPV 95 (524)
Q Consensus 17 ~~~~~l~~Ldls~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 95 (524)
..+++|+.|++++|+++ +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----------SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----------SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----------hhhccCCCCCEEECcCCcCchHHHHH
Confidence 34578999999999998 78898899999999999999999865 46778899999999999999878887
Q ss_pred HhcCcccccEEEeccCcccccC-CccccCCCCCCeEEcccCcCcccCC---ccccCCCCCCeEecccCccc
Q 040301 96 IGNFSASFQNFYAFNCKLKGNI-PQEIGNLRGLTLLSLFNNDLNGTIS---PTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 96 ~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~ 162 (524)
+..++ +|+.|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 91 ~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 AEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHCT-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HhhCC-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777 8888888888887532 2667788888888888888875554 46777888888888887776
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-18 Score=161.21 Aligned_cols=90 Identities=23% Similarity=0.351 Sum_probs=79.3
Q ss_pred ccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|...+.||+|+||+||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++..||
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 56888899999999999999863 467899999987666677889999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.++|++
T Consensus 93 V~Ey~~~G~L~~~l~~ 108 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRA 108 (299)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEEcCCCCcHHHHHHh
Confidence 9999999999999964
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=162.02 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=80.9
Q ss_pred ccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|...+.||+|+||+||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++.+||
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 46777789999999999999863 467899999987666677889999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.++|++
T Consensus 121 V~Ey~~~G~L~~~l~~ 136 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRS 136 (329)
T ss_dssp EEECCTTCBHHHHHHT
T ss_pred EEEcCCCCcHHHHHHh
Confidence 9999999999999864
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=147.39 Aligned_cols=128 Identities=27% Similarity=0.316 Sum_probs=66.0
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccCh-hccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCC
Q 040301 176 YGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPS-SLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254 (524)
Q Consensus 176 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 254 (524)
+.+++++|.++ .+|..+. .+++.|++++|.+.+..+. .+..+++|+.|+|++|.+.+..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666654 3444332 2556666666665543332 355555555555555555555455555555555555555
Q ss_pred CcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCC
Q 040301 255 NQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306 (524)
Q Consensus 255 n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 306 (524)
|.+++.+ ..+..+++|+.|+|++|++++..|..+..+++|+.|++++|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 5555444 234444555555555555554444444444455555555554443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-18 Score=185.48 Aligned_cols=197 Identities=17% Similarity=0.221 Sum_probs=108.0
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccC-ccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWS-FLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
+...++.|+|++|.+.. .+.. .|+.++|+.|.+.........+. .+..+..++.|+.|+|++|.+. .+|..+
T Consensus 171 s~~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~ 243 (727)
T 4b8c_D 171 STPLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANI 243 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG
T ss_pred cCCccceEEeeCCCCCc-chhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhh
Confidence 34678999999999984 4443 35556666666554421111100 1166778888999999999988 566666
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCC
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 176 (524)
..+. +|+.|+|++|.++ .+|..|+++++|+.|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|..+++|+
T Consensus 244 ~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 244 FKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319 (727)
T ss_dssp GGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCC
T ss_pred cCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCcc
Confidence 6776 8888888888888 77888888888888888888888 66778888888888888888887 6777788888888
Q ss_pred EEEccCCcccccCCccccCCCC-CCEEEccCCcCCCccChhccCCCCCCEEEcCCC
Q 040301 177 GIRLTGNKLSGHIPPCLASLTS-LRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231 (524)
Q Consensus 177 ~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 231 (524)
.|+|++|.+.+.+|..+..+.. ...+++++|.+.+.+|.. |..|+++.|
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 8888888888777766644321 123567778777666553 444555555
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-18 Score=181.75 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=59.6
Q ss_pred cCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccC
Q 040301 116 NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLAS 195 (524)
Q Consensus 116 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 195 (524)
..+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555555666666666666655 34444445555555555555555 45555555555555555555555 34444555
Q ss_pred CCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcC
Q 040301 196 LTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSN 240 (524)
Q Consensus 196 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 240 (524)
+++|++|+|++|.+. .+|..|..+++|+.|+|++|.+.+.+|..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 555555555555544 33444444455555555555444444433
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-17 Score=160.40 Aligned_cols=263 Identities=11% Similarity=0.046 Sum_probs=188.4
Q ss_pred CCCccEEEccCCcccccCCccccc-ccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGN-LRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..+++.|+++++ +.......+.. +++|++|||++|++..... .-+.++.+..+++..|.| .+..|.
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~---------~~~~~~~~~~~~~~~~~I---~~~aF~ 90 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSG---------KAGTYPNGKFYIYMANFV---PAYAFS 90 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEE---------SSSSSGGGCCEEECTTEE---CTTTTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecC---------cccccccccccccccccc---CHHHhc
Confidence 367999999874 33222234444 7889999999999983221 111122245566666643 345566
Q ss_pred c--------CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcc----cccC
Q 040301 98 N--------FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNL----EGSI 165 (524)
Q Consensus 98 ~--------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i----~~~~ 165 (524)
. +. +|+.+++.+ .+..+.+.+|.++++|+.|++.+|.+..+.+.+|.++.++..+.+..+.. ....
T Consensus 91 ~~~~~~~~g~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 91 NVVNGVTKGKQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp EEETTEEEECT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred ccccccccccC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence 6 66 889999988 78777788899999999999999988878888888888887777665322 1122
Q ss_pred CccccCCCCCC-EEEc-------------------------cCCcccccCCccc-cCCCCCCEEEccCCcCCCccChhcc
Q 040301 166 PYDLCHLKLMY-GIRL-------------------------TGNKLSGHIPPCL-ASLTSLRELHLGSNKLTSSIPSSLW 218 (524)
Q Consensus 166 ~~~~~~l~~L~-~L~l-------------------------~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~ 218 (524)
...|..+..|+ .+.+ .++-.. .....+ ..+++|+.+++++|.++...+..|.
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 33454445544 2322 221100 000111 1378999999999999866677899
Q ss_pred CCCCCCEEEcCCCcCcccCCcCccCCCCCC-EEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCE
Q 040301 219 SLEYILMINLSSNSLNDSLPSNIQTLKVLR-VLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLES 296 (524)
Q Consensus 219 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 296 (524)
.+++|+.+++.+| +....+..|.++++|+ .+++.+ .++.+. ..|.++++|+.+++++|+++...+..|.++++|+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 9999999999998 7767778899999999 999988 676665 78999999999999999999888889999999999
Q ss_pred EeC
Q 040301 297 LDL 299 (524)
Q Consensus 297 L~l 299 (524)
++.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 874
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=143.41 Aligned_cols=130 Identities=26% Similarity=0.303 Sum_probs=83.6
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.+|+++|+++ .+|..+.. +|++|++++|+++.++. ...+.++++|++|+|++|.+++..|..|..+. +
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISS-------DGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-H 79 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCC-------SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-T
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCC-------ccccccCCCCCEEECCCCCCCCcCHhHcCCcc-c
Confidence 67888888886 66665543 77888888887776542 02366777777777777777766666666655 6
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG 163 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 163 (524)
|+.|++++|++++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 6666666666665555556666666666666666665555555556666666666665553
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-17 Score=138.87 Aligned_cols=129 Identities=20% Similarity=0.179 Sum_probs=102.7
Q ss_pred CCCCccEEEccCCccc-ccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 18 PHQIYWVMDLSSNSFS-GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
.+++++.|++++|+++ +.+|..+..+++|++|++++|.++.+ ..+.++++|++|++++|.+.+.+|..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----------ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----------TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----------hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 3478999999999998 78888889999999999999998875 467788999999999999997777777
Q ss_pred hcCcccccEEEeccCccccc-CCccccCCCCCCeEEcccCcCcccCC---ccccCCCCCCeEecc
Q 040301 97 GNFSASFQNFYAFNCKLKGN-IPQEIGNLRGLTLLSLFNNDLNGTIS---PTMGRLKQLRGLSLK 157 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~ 157 (524)
..++ +|+.|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 85 ~~l~-~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCT-TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCC-CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7776 788888888887753 34667777777777777777776554 456677777777665
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=157.30 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=76.5
Q ss_pred cccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+++..+.||+|+||+||+|++. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.+++..+|
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 4566789999999999999962 45789999996543 3346789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|||.++|++
T Consensus 107 V~Ey~~~G~L~~~L~~ 122 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVM 122 (308)
T ss_dssp EEECCSSCBHHHHHHT
T ss_pred EEEcCCCCcHHHHHHh
Confidence 9999999999999953
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-17 Score=157.02 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=76.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.++|+..+.||+|+||+||+|+. .+|+.||||++.... ....+.|.+|+++|++++|||||++++++.+++.+||||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 36799999999999999999996 578999999997543 345678999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||+||+|.++|++
T Consensus 103 Ey~~gg~L~~~i~~ 116 (350)
T 4b9d_A 103 DYCEGGDLFKRINA 116 (350)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred eCCCCCcHHHHHHH
Confidence 99999999999953
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-15 Score=149.43 Aligned_cols=266 Identities=11% Similarity=0.102 Sum_probs=194.5
Q ss_pred cccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccc
Q 040301 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI 121 (524)
Q Consensus 42 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 121 (524)
.+..++.+.+.. .++.+.. .+|.+. +|+.+++..+ +..+....|... +|+.+.+.+ .+......+|
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~--------~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPK--------DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp ECSSCSEEECCT-TCCEECT--------TTTTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTT
T ss_pred ecCCccEEEECC-ccCEehH--------hhcccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHh
Confidence 346677777754 4666554 667764 6888888766 666666677763 788888876 6666677788
Q ss_pred cCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040301 122 GNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 201 (524)
.++++|+.+++.+|.+..+...+|. +.+|+.+.+..+ ++..-..+|..+++|+.+.+..+ +...-...|.+ .+|+.
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 8888888988888888877777776 588888888744 66566678888888888888775 55455566666 78888
Q ss_pred EEccCCcCCCccChhccCCCCCCEEEcCCCcCc-----ccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEc
Q 040301 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN-----DSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSL 275 (524)
Q Consensus 202 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L 275 (524)
+.+. +.++.....+|..+++|+.+++.+|.+. ...+..|..+++|+.+++. +.++.+. ..|.++.+|+.+.|
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 8884 4455455678888888888888877654 3455678888888888887 4466555 67778888888888
Q ss_pred cCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC-CCCeEEccCCcCc
Q 040301 276 ASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS-HLKQFNASHNRLE 329 (524)
Q Consensus 276 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~l~l~~n~l~ 329 (524)
..| ++......|..+ +|+.+++.+|.+....+..|..++ .+..+++..+.+.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 654 665666778888 888888888887766666677664 6777877766544
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-17 Score=156.85 Aligned_cols=90 Identities=23% Similarity=0.229 Sum_probs=81.2
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
..|+..+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|+.++|||||+++++|.+++.+|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 4688889999999999999997 578999999997655444567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
+||+|.+++++
T Consensus 154 ~gg~L~~~l~~ 164 (346)
T 4fih_A 154 EGGALTDIVTH 164 (346)
T ss_dssp TTEEHHHHHHH
T ss_pred CCCcHHHHHHc
Confidence 99999999864
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-17 Score=153.63 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=81.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||+||+|+. .+++.||||++.+.. ....+.+.+|+++|++++|||||++++++.+++.+||||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5799999999999999999996 578999999997543 234567999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||+||+|.++|++
T Consensus 112 Ey~~gG~L~~~i~~ 125 (311)
T 4aw0_A 112 SYAKNGELLKYIRK 125 (311)
T ss_dssp CCCTTEEHHHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 99999999999964
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-16 Score=138.29 Aligned_cols=127 Identities=24% Similarity=0.339 Sum_probs=81.8
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.+++++|+++ .+|..+. ++|++|++++|+++.++ ..+.++++|++|+|++|.+++..+..|..+. +
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip---------~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~ 79 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVP---------KELSNYKHLTLIDLSNNRISTLSNQSFSNMT-Q 79 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCC---------GGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-T
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhH---------HHhhcccCCCEEECCCCcCCEeCHhHccCCC-C
Confidence 56788888877 6666553 47778888887776543 5667777777777777777766555566555 6
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
|+.|++++|.+++..|..|.++++|+.|+|++|+++...+..|..+++|+.|++++|.+.
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666666666666555555666666666666666665544445555555666665555554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.1e-15 Score=146.53 Aligned_cols=264 Identities=11% Similarity=0.077 Sum_probs=205.2
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+++.+.+.+ +++......|.+. +|+.+.+..+ ++.+.. .+|.+ .+|+.+++.+ .+..+.+..|..+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~--------~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c 179 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGD--------MAFFN-STVQEIVFPS-TLEQLKEDIFYYC 179 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECT--------TTTTT-CCCCEEECCT-TCCEECSSTTTTC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECH--------HhcCC-CCceEEEeCC-CccEehHHHhhCc
Confidence 4566666654 4555566777774 7999998766 777654 67777 4699999985 6776777888888
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
. +|+.+++.+|.+.......|. ..+|+.+.+..+ +..+...+|.++++|+.+++..+ ++..-..+|.. .+|+.+.
T Consensus 180 ~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 180 Y-NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp T-TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred c-cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 7 899999999988877667776 589999999744 77777889999999999999875 55455566777 7899999
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCC-----CccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCC
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLT-----SSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 254 (524)
+. +.++......|.++++|+.+++.+|.+. ...+..|..+++|+.+.+.+ .+.......|.++.+|+.+++..
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 94 4466566788999999999999887664 34567889999999999984 47666677899999999999965
Q ss_pred CcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCC-CCCEEeCCCCcCC
Q 040301 255 NQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLI-SLESLDLSGNNLS 305 (524)
Q Consensus 255 n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~ 305 (524)
| ++.+. ..|.++ +|+.+.+.+|.+....+..|..++ +++.|++..+.+.
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5 55554 678888 999999999988877777787774 7888988777653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=137.19 Aligned_cols=131 Identities=21% Similarity=0.151 Sum_probs=59.4
Q ss_pred CCCCeEecccCccc-ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEE
Q 040301 149 KQLRGLSLKYNNLE-GSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMIN 227 (524)
Q Consensus 149 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 227 (524)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------- 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------- 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH--------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh--------
Confidence 44555555555554 34444444444555555555444432 33444444444444444444333333333
Q ss_pred cCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEEEccCCcccCCCc---ccccCCCCCCEEeCCCC
Q 040301 228 LSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQGPIP---ESVGSLISLESLDLSGN 302 (524)
Q Consensus 228 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N 302 (524)
+++|++|++++|.+++.+ ..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|
T Consensus 94 ----------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 ----------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ----------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ----------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 444444444444443322 334444444444444444443222 24445555555555555
Q ss_pred cCC
Q 040301 303 NLS 305 (524)
Q Consensus 303 ~l~ 305 (524)
.+.
T Consensus 158 ~~~ 160 (168)
T 2ell_A 158 EDQ 160 (168)
T ss_dssp TSC
T ss_pred Chh
Confidence 544
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-16 Score=157.95 Aligned_cols=91 Identities=23% Similarity=0.226 Sum_probs=81.9
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
...|+..+.||+|+||.||+|+. .+|+.||||++........+.+.+|+.+|+.++|||||+++++|.+++.+||||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 45699999999999999999997 57899999999765544456788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
|+||+|.+++++
T Consensus 230 ~~gG~L~~~i~~ 241 (423)
T 4fie_A 230 LEGGALTDIVTH 241 (423)
T ss_dssp CTTEEHHHHHHH
T ss_pred CCCCcHHHHHhc
Confidence 999999999864
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=134.70 Aligned_cols=130 Identities=24% Similarity=0.321 Sum_probs=89.9
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCC
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASN 278 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N 278 (524)
+.+++++|.++ .+|..+ .++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.+ ..+..+++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34556666555 334332 245666666666665 45566666667777777777766655 45667777777777777
Q ss_pred cccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 279 QFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 279 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
++++..+..|..+++|+.|++++|.++...+..+..+++|+.+++++|++.|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 7777667778888888888888888886666677888888888888888877554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=133.15 Aligned_cols=129 Identities=20% Similarity=0.240 Sum_probs=76.2
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 101 (524)
.+.+++++|+++ .+|..+ .++|++|++++|+++.++. ..+.++++|++|++++|.+++..+..+..+.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 76 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPH--------GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT- 76 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCT--------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCH--------HHhcCcccccEEECCCCcceEeChhHccCCC-
Confidence 466777777777 455444 2577777777777765543 4566677777777777777755544455554
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
+|+.|++++|.+++..+..|.++++|+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555555555555444444555555555555555555444444455555555555555554
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=148.82 Aligned_cols=92 Identities=27% Similarity=0.369 Sum_probs=78.1
Q ss_pred hhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
|+...+++...+.||+|+||+||+|++.+ .||||+++... ....++|.+|++++++++|||||+++|+|. ++.++
T Consensus 31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~ 107 (307)
T 3omv_A 31 WEIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLA 107 (307)
T ss_dssp CBCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE
T ss_pred cEEcHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEE
Confidence 34455678888999999999999999743 69999996433 445678999999999999999999999885 45789
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
||||||++|+|.++|++
T Consensus 108 iVmEy~~gGsL~~~l~~ 124 (307)
T 3omv_A 108 IVTQWCEGSSLYKHLHV 124 (307)
T ss_dssp EEEECCSSCBHHHHHHT
T ss_pred EEEEcCCCCCHHHHHhh
Confidence 99999999999999964
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8e-16 Score=131.56 Aligned_cols=36 Identities=22% Similarity=0.175 Sum_probs=14.5
Q ss_pred ccccCCCCEEEccCCcccCCCc---ccccCCCCCCEEeC
Q 040301 264 IGALVDLETLSLASNQFQGPIP---ESVGSLISLESLDL 299 (524)
Q Consensus 264 ~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l 299 (524)
+..+++|+.|++++|++++..+ ..+..+++|+.|++
T Consensus 109 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 109 LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 3334444444444444443222 23344444444443
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-16 Score=145.73 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=75.0
Q ss_pred cccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCcceEEE
Q 040301 437 NECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDFKALMW 509 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~~lv~ 509 (524)
...+.||+|+||+||+|.. .+++.||+|.+.... ....+.|.+|++++++++|||||+++++|.+ ++.+||||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 5566899999999999997 468899999997543 3456789999999999999999999999865 34589999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.++|++
T Consensus 109 Ey~~gg~L~~~l~~ 122 (290)
T 3fpq_A 109 ELMTSGTLKTYLKR 122 (290)
T ss_dssp ECCCSCBHHHHHHH
T ss_pred eCCCCCCHHHHHHh
Confidence 99999999999964
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=146.17 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=76.2
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC--------
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-------- 503 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-------- 503 (524)
.+|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 4689999999999999999996 578999999997544 344578999999999999999999999987544
Q ss_pred ----cceEEEcccCCCCHHHHHHh
Q 040301 504 ----FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ----~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+|+|||||++|+|.+++++
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~ 108 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNG 108 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHT
T ss_pred CCCcEEEEEEecCCCCcHHHHHHh
Confidence 37999999999999999864
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=129.51 Aligned_cols=131 Identities=24% Similarity=0.268 Sum_probs=77.7
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCC
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASN 278 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N 278 (524)
+.++++++.+. .+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+++.+ ..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44455555544 223222 245555666666555444444555666666666666665554 33456666666666666
Q ss_pred cccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 279 QFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 279 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
++++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.+.++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6665555556667777777777777775555555667777777777777766554
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-15 Score=142.81 Aligned_cols=89 Identities=21% Similarity=0.239 Sum_probs=74.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||+||+|+. .+|+.||||.++... ....+.+.+|++++++++|||||++++++.+++.+|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 5799999999999999999996 578999999997543 233567999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||| +|+|.+++++
T Consensus 93 Ey~-~g~L~~~l~~ 105 (275)
T 3hyh_A 93 EYA-GNELFDYIVQ 105 (275)
T ss_dssp ECC-CEEHHHHHHH
T ss_pred eCC-CCCHHHHHHH
Confidence 999 6899999864
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=131.50 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=82.5
Q ss_pred CCCCccEEEccCCcccccCCccccccc-CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLR-HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
...+|+.|++++|+++ .+|. +..+. +|++|++++|.++++ ..+.++++|++|++++|.+++..+..+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~----------~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL----------DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE----------CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc----------cccccCCCCCEEECCCCcccccCcchh
Confidence 4567888888888887 4454 44444 788888888887764 456667778888888887776555555
Q ss_pred hcCcccccEEEeccCcccccCCc--cccCCCCCCeEEcccCcCcccCCc----cccCCCCCCeEecccCccc
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQ--EIGNLRGLTLLSLFNNDLNGTISP----TMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~ 162 (524)
..++ +|+.|++++|.+. .+|. .+..+++|+.|++++|.+.. .|. .+..+++|+.|+++.|.+.
T Consensus 85 ~~l~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALP-DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCT-TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCC-CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6665 6666666666664 2333 55566666666666666653 233 2555566666666555544
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=148.05 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=83.0
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCC-CCccceeE
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCH-RNLIKILS 497 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H-~niv~l~~ 497 (524)
..+|+...++|+..+.||+|+||+||+|.+. .++.||||.+.... ....++|.+|+++|++++| ||||+++|
T Consensus 56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g 135 (353)
T 4ase_A 56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 135 (353)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred CcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence 3567777889999999999999999999852 23579999997654 3456789999999999966 89999999
Q ss_pred EEEcC-CcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSNP-DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~~-~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+|.++ +.++||||||++|+|.++|++
T Consensus 136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~ 162 (353)
T 4ase_A 136 ACTKPGGPLMVIVEFCKFGNLSTYLRS 162 (353)
T ss_dssp EECCTTSCCEEEEECCTTEEHHHHHHH
T ss_pred EEEecCCEEEEEEEcCCCCCHHHHHHh
Confidence 99764 578999999999999999974
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=145.03 Aligned_cols=88 Identities=19% Similarity=0.171 Sum_probs=72.5
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC----cceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----FKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----~~~lv~ 509 (524)
++|...+.||+|+||+||+|++ +|+.||||+++.... ....+.+|+..+.+++|||||+++|+|.+++ .+||||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 5678889999999999999998 578999999975432 2223345666677899999999999998754 579999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.++|++
T Consensus 81 Ey~~~gsL~~~l~~ 94 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR 94 (303)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred cCCCCCcHHHHHHh
Confidence 99999999999975
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=147.10 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=76.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.||+|+||.||+|+. .+|+.||||+++.... ..+|+.+++.++|||||++++++.+++.+|||||
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence 345678888999999999999996 5789999999975432 2479999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
||+||+|.++|++
T Consensus 131 y~~gg~L~~~l~~ 143 (336)
T 4g3f_A 131 LLEGGSLGQLIKQ 143 (336)
T ss_dssp CCTTCBHHHHHHH
T ss_pred ccCCCcHHHHHHH
Confidence 9999999999964
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-16 Score=148.59 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=73.5
Q ss_pred ccccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|+..+.||+|+||+||+|+. .+++.||||.++... ......+.+|+++|++++|||||++++++.+++.+|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 5799999999999999999985 246789999997543 2233468899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||+||+|.++|++
T Consensus 104 vmEy~~gg~L~~~l~~ 119 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSK 119 (304)
T ss_dssp EECCCTTCEEHHHHHH
T ss_pred EEEcCCCCCHHHHHHh
Confidence 9999999999999864
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-17 Score=146.53 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=90.5
Q ss_pred CCccEEEccCCcccccCCc------ccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC
Q 040301 20 QIYWVMDLSSNSFSGHIPN------TFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP 93 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 93 (524)
.+++.++++.+++++..|. .|.++++|++|++++|+++.+ ..+.++++|++|++++|.+. .+|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l----------~~~~~l~~L~~L~l~~n~l~-~l~ 86 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI----------SSLSGMENLRILSLGRNLIK-KIE 86 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC----------CCHHHHTTCCEEEEEEEEEC-SCS
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc----------cccccCCCCCEEECCCCCcc-ccc
Confidence 4666777777777766665 777888888888888887764 34556677888888888777 456
Q ss_pred hhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCC-ccccCCCCCCeEecccCcccccCC
Q 040301 94 PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS-PTMGRLKQLRGLSLKYNNLEGSIP 166 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~ 166 (524)
..+..++ +|+.|++++|.+++ +| .+..+++|+.|++++|+++...+ ..+..+++|++|++++|.+++..|
T Consensus 87 ~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 87 NLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred chhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 5666555 77777777777764 33 46667777777777777764322 356666677777777776665443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-15 Score=128.57 Aligned_cols=131 Identities=19% Similarity=0.204 Sum_probs=72.3
Q ss_pred ccCCCCCCeEEcccCcCcccCCccccCC-CCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 040301 121 IGNLRGLTLLSLFNNDLNGTISPTMGRL-KQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199 (524)
Q Consensus 121 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 199 (524)
+.++.+|+.|++++|++... +. +..+ ++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45566677777777776633 33 3333 3666776666666643 455556666666666666654433334556666
Q ss_pred CEEEccCCcCCCccCh--hccCCCCCCEEEcCCCcCcccCCcC----ccCCCCCCEEEcCCCcC
Q 040301 200 RELHLGSNKLTSSIPS--SLWSLEYILMINLSSNSLNDSLPSN----IQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l 257 (524)
++|++++|.+. .+|. .+..+++|+.|++++|.+.. .|.. +..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666654 3333 45555555555555555542 3332 44455555555555444
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-14 Score=148.82 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=82.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|++.+.||+|+||.||+|.. .+|+.||+|.+........+.+.+|+++|+.++|||||++++++.+++.+||||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 36799999999999999999996 57899999999876655677899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
|+||+|.++|.
T Consensus 236 ~~gg~L~~~i~ 246 (573)
T 3uto_A 236 MSGGELFEKVA 246 (573)
T ss_dssp CCCCBHHHHHT
T ss_pred cCCCcHHHHHH
Confidence 99999999985
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-16 Score=144.07 Aligned_cols=131 Identities=25% Similarity=0.339 Sum_probs=63.8
Q ss_pred cccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCC
Q 040301 192 CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLE 271 (524)
Q Consensus 192 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~ 271 (524)
.+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.+ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 34444444444444444442 23 3444444444444444444 23333444445555555555554433 344455555
Q ss_pred EEEccCCcccCCCc-ccccCCCCCCEEeCCCCcCCCCCcc----------cccCCCCCCeEEccCCcC
Q 040301 272 TLSLASNQFQGPIP-ESVGSLISLESLDLSGNNLSGKIPK----------SLETLSHLKQFNASHNRL 328 (524)
Q Consensus 272 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~l~l~~n~l 328 (524)
.|++++|++++..+ ..+..+++|+.|++++|.+.+..|. .+..+++|+.++ +|++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 55555555553211 2455566666666666666544333 255566666664 4444
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-12 Score=127.73 Aligned_cols=199 Identities=14% Similarity=0.079 Sum_probs=107.1
Q ss_pred CCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCC
Q 040301 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASL 196 (524)
Q Consensus 117 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 196 (524)
...+|.++.+|+.+.+.++. ..+...+|.++++|+.+.+..+ ++......|..+..|+.+.+..+... ..+.+...
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~ 229 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK 229 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred chhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc
Confidence 44568888889999887553 4466778888889998888766 55455567777888877777655432 22223334
Q ss_pred CCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccC---------------------CCCCCEEEcCCC
Q 040301 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQT---------------------LKVLRVLDLSRN 255 (524)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------l~~L~~L~l~~n 255 (524)
.+|+.+.+..+. .......+..+..++.+.+..+... .....|.. +.+|+.+.+..+
T Consensus 230 ~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 230 TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT
T ss_pred CCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc
Confidence 556666554332 2223344555556666665544322 23333444 444444444332
Q ss_pred cCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 256 QLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 256 ~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
+..+. ..|.++.+|+.+.|..+ ++.....+|.++.+|+.+++..+ ++.....+|..+.+|+.+++.
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 22222 33444555555555432 33333444555555555555444 333334445555555555543
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-14 Score=139.06 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=76.6
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------Cc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------DF 504 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------~~ 504 (524)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|+.++|||||++++++... +.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 5799999999999999999996 579999999996533 34567789999999999999999999998643 56
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
+|||||||+ |+|.+++++
T Consensus 134 ~~ivmE~~~-g~L~~~i~~ 151 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHS 151 (398)
T ss_dssp EEEEEECCS-EEHHHHHTS
T ss_pred EEEEEeCCC-CCHHHHHHh
Confidence 899999996 689998854
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=117.63 Aligned_cols=105 Identities=25% Similarity=0.251 Sum_probs=61.4
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 101 (524)
.+.||+++|+++ .+|..+. ++|++|+|++|+++.+.. ..|.++++|++|+|++|.+++.
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~--------~~~~~l~~L~~L~Ls~N~l~~l---------- 69 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEP--------GVFDRLTQLTRLDLDNNQLTVL---------- 69 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCT--------TTTTTCTTCSEEECCSSCCCCC----------
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccCh--------hhhcCcccCCEEECCCCCcCcc----------
Confidence 456666666665 4554442 456666666666655432 4455555555665555555543
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
.+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 70 ---------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 70 ---------------PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---------------ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 3444555666666666666666555555666666666666666665
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=135.85 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=80.3
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcC
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNP 502 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~ 502 (524)
.+....+.|++.+.||+|+||+||+|+. .+++.||+|.+.... ...++.+|+++|+.+ +|||||++++++.++
T Consensus 15 ~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~ 92 (361)
T 4f9c_A 15 AVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKN 92 (361)
T ss_dssp HSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEET
T ss_pred hcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEEC
Confidence 3344567899999999999999999984 246789999986543 235678999999988 699999999999999
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.+|+|||||++|+|.+++++
T Consensus 93 ~~~~lvmE~~~g~~L~~~~~~ 113 (361)
T 4f9c_A 93 DHVVIAMPYLEHESFLDILNS 113 (361)
T ss_dssp TEEEEEEECCCCCCHHHHHTT
T ss_pred CEEEEEEeCCCcccHHHHHcC
Confidence 999999999999999999865
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-14 Score=136.21 Aligned_cols=101 Identities=27% Similarity=0.447 Sum_probs=89.5
Q ss_pred cccchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 422 RRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 422 ~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
..+++.++..++++|+..+.||+|+||.||+|...+++.||||++........+.+.+|+++++.++||||+++++++.+
T Consensus 27 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 106 (321)
T 2qkw_B 27 YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE 106 (321)
T ss_dssp ---CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred eeecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence 35566777888999999999999999999999987889999999876655567789999999999999999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHH
Q 040301 502 PDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~ 522 (524)
++..++||||+++|+|.++++
T Consensus 107 ~~~~~lv~e~~~~~~L~~~l~ 127 (321)
T 2qkw_B 107 RNEMILIYKYMENGNLKRHLY 127 (321)
T ss_dssp TTCCEEEEECCTTCBTGGGSS
T ss_pred CCeEEEEEEcCCCCcHHHHHh
Confidence 999999999999999998774
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-13 Score=115.80 Aligned_cols=88 Identities=23% Similarity=0.226 Sum_probs=45.9
Q ss_pred CCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEc
Q 040301 245 KVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323 (524)
Q Consensus 245 ~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l 323 (524)
++|+.|++++|.+++.+ ..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444442 33444455555555555555444444455555555555555555444445555556666666
Q ss_pred cCCcCcccc
Q 040301 324 SHNRLEGKI 332 (524)
Q Consensus 324 ~~n~l~~~~ 332 (524)
++|++++.+
T Consensus 110 ~~N~~~c~c 118 (170)
T 3g39_A 110 LNNPWDCAC 118 (170)
T ss_dssp CSSCBCTTB
T ss_pred CCCCCCCCc
Confidence 666655544
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-13 Score=141.16 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=76.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHH---HHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSF---DSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~---~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.++|+..+.||+|+||.||+|+. .+|+.||||++++.. ......+ .+++.+++.++|||||+++++|.+++.+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 46899999999999999999996 578999999997543 1122233 3446677888999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|+|||||+||+|.++|++
T Consensus 268 ylVmEy~~GGdL~~~l~~ 285 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQ 285 (689)
T ss_dssp EEEECCCCSCBHHHHHHH
T ss_pred EEEEecCCCCcHHHHHHh
Confidence 999999999999999864
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=134.24 Aligned_cols=104 Identities=33% Similarity=0.518 Sum_probs=91.3
Q ss_pred cccccchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEE
Q 040301 420 TWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSS 498 (524)
Q Consensus 420 ~~~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~ 498 (524)
....+++.++..+.++|+..+.||+|+||.||+|...+++.||||++..... .....+.+|+++++.++||||++++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence 3467889999999999999999999999999999987889999999975432 223468899999999999999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.+++..++||||+++|+|.+++++
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~ 120 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRE 120 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHC
T ss_pred EecCCceEEEEEeccCCCHHHHHHh
Confidence 9999999999999999999999864
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.2e-13 Score=115.71 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=64.9
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 101 (524)
-+.+++++|+++ .+|..+. ++|++|+|++|+++.+.. ..|.++++|++|+|++|.+++..+.
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~i~~~------- 75 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEP--------GVFDHLVNLQQLYFNSNKLTAIPTG------- 75 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSSCCCCCCTT-------
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCH--------HHhcCCcCCCEEECCCCCCCccChh-------
Confidence 366777777776 5666553 567777777777766532 5566667777777777766644333
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
.|.++++|+.|+|++|++.+..+..|..+++|+.|+|++|.+.
T Consensus 76 ------------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 76 ------------------VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ------------------HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 3445556666666666665544445566666666666666655
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-13 Score=138.63 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=86.3
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEE
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSC 499 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~ 499 (524)
..++++....++|+..+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|+.++..++||||++++++|
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 143 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF 143 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 345677778899999999999999999999974 578899999975331 1233488999999999999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+++..|+|||||++|+|.+++++
T Consensus 144 ~~~~~~~lV~Ey~~gg~L~~~l~~ 167 (437)
T 4aw2_A 144 QDDNNLYLVMDYYVGGDLLTLLSK 167 (437)
T ss_dssp ECSSEEEEEECCCTTCBHHHHHHT
T ss_pred eeCCEEEEEEecCCCCcHHHHHHH
Confidence 999999999999999999999965
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.6e-13 Score=128.14 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=83.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|...+.||+|+||.||+|.. .+++.||+|.+........+.|.+|++++++++||||+++++++.+++..++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 46788899999999999999997 46889999999766666778899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 89 ~~~~~L~~~l~~ 100 (310)
T 3s95_A 89 IKGGTLRGIIKS 100 (310)
T ss_dssp CTTCBHHHHHHH
T ss_pred cCCCcHHHHHHh
Confidence 999999999875
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=114.57 Aligned_cols=105 Identities=22% Similarity=0.197 Sum_probs=88.4
Q ss_pred CEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEeccc
Q 040301 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKY 158 (524)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 158 (524)
+.+++++|.+. .+|..+. .+|+.|++++|++.+..|..|.++++|+.|+|++|+++++.+..|..+++|+.|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 67777777776 3444332 2788888888888877788899999999999999999988777889999999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccc
Q 040301 159 NNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 159 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 187 (524)
|++++..+..|..+++|+.|++++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99997666679999999999999999873
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-13 Score=129.88 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=87.1
Q ss_pred cccchhhhhhhhcc----------ccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCC
Q 040301 422 RRTSYLDIQRATDE----------FNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHR 490 (524)
Q Consensus 422 ~~~~~~~l~~~~~~----------~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~ 490 (524)
..++++++..+++. |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 45677777766653 666779999999999999974 7899999999765555567889999999999999
Q ss_pred CccceeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 491 NLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 491 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
||+++++++...+..++||||+++|+|.+++++
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 135 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ 135 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHh
Confidence 999999999999999999999999999998864
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-13 Score=127.47 Aligned_cols=92 Identities=23% Similarity=0.234 Sum_probs=82.5
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.||+|+||.||+|.. .+++.||||.+........+.+.+|+.+++.++||||+++++++..++..++|||
T Consensus 18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 97 (297)
T 3fxz_A 18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME 97 (297)
T ss_dssp GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence 346799999999999999999995 5789999999976554456778999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 98 ~~~~~~L~~~~~~ 110 (297)
T 3fxz_A 98 YLAGGSLTDVVTE 110 (297)
T ss_dssp CCTTCBHHHHHHH
T ss_pred CCCCCCHHHHHhh
Confidence 9999999999864
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.39 E-value=7.8e-13 Score=128.53 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=82.6
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
...++|+..+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++.+++..|+
T Consensus 12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l 91 (328)
T 3fe3_A 12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYL 91 (328)
T ss_dssp CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEE
Confidence 3456799999999999999999997 678999999997543 3456778999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++++
T Consensus 92 v~e~~~~~~L~~~l~~ 107 (328)
T 3fe3_A 92 IMEYASGGEVFDYLVA 107 (328)
T ss_dssp EECCCTTCBHHHHHHH
T ss_pred EEECCCCCcHHHHHHH
Confidence 9999999999999853
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-13 Score=127.15 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=83.5
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
.+..++....++|+..+.||+|+||.||+|.. +++.||||.+.... ....+++.+|++++++++||||+++++++..
T Consensus 27 ~~~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~ 105 (309)
T 3p86_A 27 MDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQ 105 (309)
T ss_dssp -----CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CCcccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE
Confidence 34455556677899999999999999999987 57889999996543 3456789999999999999999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+..++||||+++|+|.+++++
T Consensus 106 ~~~~~lv~e~~~~~~L~~~l~~ 127 (309)
T 3p86_A 106 PPNLSIVTEYLSRGSLYRLLHK 127 (309)
T ss_dssp TTCCEEEEECCTTCBHHHHHHS
T ss_pred CCceEEEEecCCCCcHHHHHhh
Confidence 9999999999999999999864
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-13 Score=132.89 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=84.5
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
..+....++|...+.||+|+||.||+|... +++.||||.+.... ....++|.+|++++++++||||+++++++..++.
T Consensus 107 ~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~ 186 (377)
T 3cbl_A 107 DKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP 186 (377)
T ss_dssp CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred cccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCC
Confidence 344556678999999999999999999974 78899999997543 3345678999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++|||||++|+|.+++++
T Consensus 187 ~~lv~e~~~~g~L~~~l~~ 205 (377)
T 3cbl_A 187 IYIVMELVQGGDFLTFLRT 205 (377)
T ss_dssp CEEEEECCTTCBHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHh
Confidence 9999999999999999863
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=124.03 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=81.6
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
...++|+..+.||+|+||.||+|...+++.||+|++..... ..+++.+|++++++++||||+++++++.+++..++|||
T Consensus 7 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (269)
T 4hcu_A 7 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFE 85 (269)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred eChhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEE
Confidence 34467899999999999999999987888899999975432 34678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 86 ~~~~~~L~~~l~~ 98 (269)
T 4hcu_A 86 FMEHGCLSDYLRT 98 (269)
T ss_dssp CCTTCBHHHHHHT
T ss_pred eCCCCcHHHHHHh
Confidence 9999999999864
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=126.62 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=77.9
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD------- 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------- 503 (524)
.++|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||++++++|.+.+
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 357899999999999999999974 78999999997543 345678999999999999999999999986643
Q ss_pred --------------------------------------------------cceEEEcccCCCCHHHHHHh
Q 040301 504 --------------------------------------------------FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 --------------------------------------------------~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++|||||++|+|.+++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 154 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNR 154 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHT
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhc
Confidence 27999999999999999864
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=130.00 Aligned_cols=91 Identities=22% Similarity=0.340 Sum_probs=79.9
Q ss_pred hccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..+|+..+.||+|+||.||+|+.. ++..||||.++... ....++|.+|+.++++++||||+++++++.+++..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 457999999999999999999863 46779999997543 4456789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 124 v~e~~~~~sL~~~l~~ 139 (373)
T 2qol_A 124 VTEYMENGSLDSFLRK 139 (373)
T ss_dssp EEECCTTCBHHHHHHT
T ss_pred EEeCCCCCcHHHHHHh
Confidence 9999999999999864
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=124.77 Aligned_cols=90 Identities=9% Similarity=-0.009 Sum_probs=80.5
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
+.|+..+.||+|+||.||+|... +++.||||.+.... ....+.|.+|+..+++++||||+++++++..++..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 56999999999999999999974 58899999997543 334578999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 111 e~~~g~~L~~~l~~ 124 (286)
T 3uqc_A 111 EWIRGGSLQEVADT 124 (286)
T ss_dssp ECCCEEEHHHHHTT
T ss_pred EecCCCCHHHHHhc
Confidence 99999999999864
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-13 Score=133.71 Aligned_cols=98 Identities=11% Similarity=0.171 Sum_probs=84.6
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
+.++....++|+..+.||+|+||.||+|+. .+++.||+|++..... ...+.+.+|+.+++.++|||||+++++|.+
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 455666788999999999999999999997 4688999999975321 123457899999999999999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..|+|||||++|+|.+++++
T Consensus 141 ~~~~~lV~E~~~gg~L~~~l~~ 162 (410)
T 3v8s_A 141 DRYLYMVMEYMPGGDLVNLMSN 162 (410)
T ss_dssp SSEEEEEECCCTTEEHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHc
Confidence 9999999999999999999864
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-13 Score=132.38 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=86.6
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEE
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSC 499 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~ 499 (524)
+.+++.....++|+..+.||+|+||.||+|+. .+++.||||++.+.. ....+.+.+|+.++..++||||+++++++
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 130 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF 130 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence 34566667788999999999999999999997 478999999997533 12234588999999999999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+++..|+|||||++|+|.+++++
T Consensus 131 ~~~~~~~lVmE~~~gg~L~~~l~~ 154 (412)
T 2vd5_A 131 QDENYLYLVMEYYVGGDLLTLLSK 154 (412)
T ss_dssp ECSSEEEEEECCCCSCBHHHHHHH
T ss_pred eeCCEEEEEEcCCCCCcHHHHHHh
Confidence 999999999999999999999864
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=128.78 Aligned_cols=92 Identities=22% Similarity=0.345 Sum_probs=80.3
Q ss_pred hhccccccCcccCCCCceEEEEEe--------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI--------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSN 501 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 501 (524)
..++|+..+.||+|+||.||+|+. .++..||||.++... ....+.+.+|+++++++ +||||++++++|.+
T Consensus 79 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 158 (370)
T 2psq_A 79 PRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 158 (370)
T ss_dssp CGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred cHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence 456789999999999999999985 234579999997543 44567899999999999 89999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..|+||||+++|+|.+++++
T Consensus 159 ~~~~~lv~e~~~~g~L~~~l~~ 180 (370)
T 2psq_A 159 DGPLYVIVEYASKGNLREYLRA 180 (370)
T ss_dssp SSSCEEEEECCTTCBHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHh
Confidence 9999999999999999999864
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=124.16 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=82.3
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...+....++|+..+.||+|+||.||+|...++..||+|.+..... ..+++.+|++++++++||||+++++++.+++..
T Consensus 16 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 94 (283)
T 3gen_A 16 YGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPI 94 (283)
T ss_dssp CCTTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred CCCccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCe
Confidence 3455566778999999999999999999988888899999976432 346789999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 95 ~lv~e~~~~~~L~~~l~~ 112 (283)
T 3gen_A 95 FIITEYMANGCLLNYLRE 112 (283)
T ss_dssp EEEECCCTTCBHHHHHHC
T ss_pred EEEEeccCCCcHHHHHHH
Confidence 999999999999999864
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-11 Score=119.23 Aligned_cols=271 Identities=13% Similarity=0.035 Sum_probs=177.2
Q ss_pred cccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEecc
Q 040301 31 SFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFN 110 (524)
Q Consensus 31 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 110 (524)
+++......|.++.+|+++.+.. .++.+.. .+|.++++|+.++|.++ +..+....|.... +|+.+.+..
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~--------~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~-~L~~i~~p~ 126 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGE--------FAFENCSKLEIINIPDS-VKMIGRCTFSGCY-ALKSILLPL 126 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECT--------TTTTTCTTCCEECCCTT-CCEECTTTTTTCT-TCCCCCCCT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcch--------hHhhCCCCCcEEEeCCC-ceEccchhhcccc-cchhhcccC
Confidence 45656677899999999999974 4777765 78999999999999755 6656667777776 788877665
Q ss_pred CcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCC
Q 040301 111 CKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIP 190 (524)
Q Consensus 111 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 190 (524)
+ +......+|.+...++...... ...+...+|.++++|+.+.+..+- .......|..+.+|+.+.+..+ +.....
T Consensus 127 ~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~ 201 (394)
T 4fs7_A 127 M-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRD 201 (394)
T ss_dssp T-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECT
T ss_pred c-eeeecceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCc
Confidence 4 4445566677765444333332 333456789999999999998664 3356678999999999999876 554566
Q ss_pred ccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCC
Q 040301 191 PCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDL 270 (524)
Q Consensus 191 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L 270 (524)
..|.++..|+.+.+..+.. .+.+.+.....|+.+.+..+ +.......+..+..|+.+.+..+...-....+..+..+
T Consensus 202 ~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l 278 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGL 278 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTC
T ss_pred hhhccccccceeecCCCce--EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeecccccccccc
Confidence 7788899999988877644 23455566678999988754 33344567788899999998876543222344444455
Q ss_pred CEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 271 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 271 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
+.+....+.+. ...|..+.+|+.+.+..+ ++.....+|..+.+|+.+++.
T Consensus 279 ~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 279 KKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp CEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 54444433221 123344444444444332 222233344444444444443
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=123.55 Aligned_cols=101 Identities=31% Similarity=0.473 Sum_probs=89.7
Q ss_pred ccccchhhhhhhhcccccc------CcccCCCCceEEEEEeCCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcCCCC
Q 040301 421 WRRTSYLDIQRATDEFNEC------NLLGTGSFGSVYKGTISDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNVCHR 490 (524)
Q Consensus 421 ~~~~~~~~l~~~~~~~~~~------~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l~H~ 490 (524)
...+++.++..++.+|... +.||+|+||.||+|.. +++.||||.+.... ....+.+.+|+.+++.++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 4578899999999998877 8899999999999997 67899999996432 33467899999999999999
Q ss_pred CccceeEEEEcCCcceEEEcccCCCCHHHHHH
Q 040301 491 NLIKILSSCSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 491 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
||+++++++.+++..++||||+++|+|.++++
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 122 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 122 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHH
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHH
Confidence 99999999999999999999999999999986
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-10 Score=116.10 Aligned_cols=287 Identities=9% Similarity=0.092 Sum_probs=155.1
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccc---cCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNN---LTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
|+.+.+.. .++......|.++.+|+.+.+..|. ++.+.. .+|.++.+|+.+.+..+ +..+....|..
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~--------~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGR--------QAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECT--------TTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEech--------hhchhcccceeeccCCc-cceehhhhhhh
Confidence 55555543 2444444555555555555555442 333332 44555555555544332 33233334444
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
.. +|+.+.+..+ +.......|.+...|+.+.+..+ +..+...+|.. .+|+.+.+..+-.. .-...|..+.++...
T Consensus 136 c~-~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 136 CE-ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTI 210 (394)
T ss_dssp CT-TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEE
T ss_pred hc-ccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcccccee
Confidence 43 5555555432 22233344555555555555433 33233334432 34555555433222 333445555555555
Q ss_pred EccCCcccccCCcc-------------ccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCC
Q 040301 179 RLTGNKLSGHIPPC-------------LASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLK 245 (524)
Q Consensus 179 ~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 245 (524)
....+......... +.....+..+.+.. .+......+|..+..|+.+.+..+... .....|.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~ 288 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCP 288 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccccc
Confidence 44433221110000 00111222333221 122233456778888888888765443 4556778888
Q ss_pred CCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 246 VLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 246 ~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
+|+.+.+. +.+..+. ..|.++.+|+.+.|..+ ++.....+|..+.+|+.+.+..+ ++..-..+|.++.+|+.+++.
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 89998886 4455555 67888889999998765 55555677888899999988654 665666788889999999988
Q ss_pred CCcC
Q 040301 325 HNRL 328 (524)
Q Consensus 325 ~n~l 328 (524)
++..
T Consensus 366 ~~~~ 369 (394)
T 4gt6_A 366 GSRS 369 (394)
T ss_dssp SCHH
T ss_pred Ccee
Confidence 7754
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=126.98 Aligned_cols=98 Identities=18% Similarity=0.363 Sum_probs=84.9
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEE
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSS 498 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~ 498 (524)
+..+....++|+..+.||+|+||.||+|... +++.||||.+.... ....+.|.+|+.++++++||||++++++
T Consensus 39 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~ 118 (343)
T 1luf_A 39 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGV 118 (343)
T ss_dssp HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred cceeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 3445556788999999999999999999963 34789999997543 3456789999999999999999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.+++..++||||+++|+|.+++++
T Consensus 119 ~~~~~~~~lv~e~~~~~~L~~~l~~ 143 (343)
T 1luf_A 119 CAVGKPMCLLFEYMAYGDLNEFLRS 143 (343)
T ss_dssp ECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred EccCCceEEEEecCCCCcHHHHHHH
Confidence 9999999999999999999999864
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=122.91 Aligned_cols=92 Identities=22% Similarity=0.250 Sum_probs=81.7
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
...++|+..+.||+|+||.||+|...++..||+|.+..... ..+++.+|++++++++||||+++++++.++...++|||
T Consensus 5 l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 83 (268)
T 3sxs_A 5 LKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE 83 (268)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred echhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEE
Confidence 34578999999999999999999988888899999975432 34678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 84 ~~~~~~L~~~l~~ 96 (268)
T 3sxs_A 84 YISNGCLLNYLRS 96 (268)
T ss_dssp CCTTCBHHHHHHH
T ss_pred ccCCCcHHHHHHH
Confidence 9999999999864
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=127.37 Aligned_cols=90 Identities=14% Similarity=0.272 Sum_probs=79.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-----HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
.+.|+..+.||+|+||.||+|.. .+++.||||.+..... ...+.+.+|+.+++.++||||+++++++.+++..|
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 35799999999999999999996 5689999999965331 13577999999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+|||||++|+|.+++.
T Consensus 103 lv~e~~~g~~L~~~l~ 118 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIV 118 (351)
T ss_dssp EEEECCSSCBHHHHHH
T ss_pred EEEeCCCCCCHHHHHH
Confidence 9999999999998875
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=125.54 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=79.5
Q ss_pred hccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.+.|...+.||+|+||.||+|... .+..||||.+.... ....+.|.+|++++++++||||+++++++.+++..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 456888999999999999999973 34469999997643 4456789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 128 v~e~~~~~~L~~~l~~ 143 (325)
T 3kul_A 128 VTEYMENGSLDTFLRT 143 (325)
T ss_dssp EEECCTTCBHHHHHHT
T ss_pred EeeCCCCCcHHHHHHh
Confidence 9999999999999853
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=131.98 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=84.1
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
..+++...++|...+.||+|+||.||+|.+.++..||||.++.... ..++|.+|++++++++|||||++++++. .+..
T Consensus 180 ~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~ 257 (454)
T 1qcf_A 180 KDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM-SVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPI 257 (454)
T ss_dssp TTCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSC
T ss_pred ccceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCc-cHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCcc
Confidence 3555667788999999999999999999998788899999976432 4678999999999999999999999986 6679
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 258 ~lv~e~~~~g~L~~~l~~ 275 (454)
T 1qcf_A 258 YIITEFMAKGSLLDFLKS 275 (454)
T ss_dssp EEEECCCTTCBHHHHHHS
T ss_pred EEEEeecCCCcHHHHHHh
Confidence 999999999999999863
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=127.11 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=80.9
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
..+.|+..+.||+|+||.||+|.. .+|+.||+|.+..... ...+.+.+|+.+++.++||||+++++++.+.+.
T Consensus 10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~ 89 (361)
T 2yab_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD 89 (361)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence 346799999999999999999997 4689999999975432 135678999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++.+
T Consensus 90 ~~lv~e~~~gg~L~~~l~~ 108 (361)
T 2yab_A 90 VVLILELVSGGELFDFLAQ 108 (361)
T ss_dssp EEEEEECCCSCBHHHHHTT
T ss_pred EEEEEEcCCCCcHHHHHHh
Confidence 9999999999999999854
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-12 Score=125.42 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=80.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|+. .+++.||+|.++... ....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 46789999999999999999997 468999999997542 23456788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 84 ~E~~~gg~L~~~l~~ 98 (337)
T 1o6l_A 84 MEYANGGELFFHLSR 98 (337)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EeCCCCCcHHHHHHh
Confidence 999999999998853
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-14 Score=139.64 Aligned_cols=164 Identities=20% Similarity=0.181 Sum_probs=73.5
Q ss_pred CCCCEEEccCCCCCCCCChhHhcC----cccccEEEeccCcccccCCccc-cCCCCCCeEEcccCcCcccCCccc-----
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNF----SASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISPTM----- 145 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~----- 145 (524)
+.|++|+|++|.++......+... ..+|++|++++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456677777777664433333332 1155555555555543222222 123455555555555543322222
Q ss_pred cCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCc----cChhccCCC
Q 040301 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSS----IPSSLWSLE 221 (524)
Q Consensus 146 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~ 221 (524)
...++|++|+|++|.++..-.. .++..+...++|++|+|++|.+... +...+...+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 1234555555555555421100 1122223344444444444444321 123344444
Q ss_pred CCCEEEcCCCcCccc----CCcCccCCCCCCEEEcCCCcCcc
Q 040301 222 YILMINLSSNSLNDS----LPSNIQTLKVLRVLDLSRNQLSG 259 (524)
Q Consensus 222 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 259 (524)
+|+.|+|++|.+++. +...+...++|++|++++|.+.+
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 555555555555431 22223344556666666666543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-14 Score=139.97 Aligned_cols=163 Identities=19% Similarity=0.137 Sum_probs=99.3
Q ss_pred ccCCCEEEccccccCCCCCCccccCccccCC-CCCCCCEEEccCCCCCCCCChhHhc-CcccccEEEeccCcccccCCcc
Q 040301 43 LRHLSSLLLTWNNLTTESSLADQWSFLSALT-NCRHLKALSLGSNPLGGILPPVIGN-FSASFQNFYAFNCKLKGNIPQE 120 (524)
Q Consensus 43 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~ 120 (524)
++.|++|+|++|.++.... ..+. ..+. ..++|++|+|++|.++......+.. +. +|+.|++++|.++......
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~--~~l~--~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC--TVVA--AVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH--HHHH--HHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHH--HHHH--HHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHH
Confidence 4578888888888765321 0000 1222 2367888888888876543333332 33 7888888888886544444
Q ss_pred c-----cCCCCCCeEEcccCcCccc----CCccccCCCCCCeEecccCccccc----CCccccCCCCCCEEEccCCcccc
Q 040301 121 I-----GNLRGLTLLSLFNNDLNGT----ISPTMGRLKQLRGLSLKYNNLEGS----IPYDLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 121 ~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~ 187 (524)
+ ...++|+.|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|+.|++++|.+++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 4 2467899999999988742 333446678888888888888742 23445555566666666666543
Q ss_pred c----CCccccCCCCCCEEEccCCcCC
Q 040301 188 H----IPPCLASLTSLRELHLGSNKLT 210 (524)
Q Consensus 188 ~----~~~~~~~l~~L~~L~l~~n~l~ 210 (524)
. +...+...++|++|++++|.+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 2 2222333455555555555554
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=123.83 Aligned_cols=91 Identities=25% Similarity=0.318 Sum_probs=80.0
Q ss_pred hccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--Ccc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~ 505 (524)
.++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++... ...
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46789999999999999999984 35788999999876666678899999999999999999999998654 458
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 89 ~lv~e~~~~~~L~~~l~~ 106 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQK 106 (295)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHh
Confidence 999999999999999864
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=124.08 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=80.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|+. .+|+.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 35789999999999999999997 478999999997543 22356788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 85 ~e~~~gg~L~~~l~~ 99 (318)
T 1fot_A 85 MDYIEGGELFSLLRK 99 (318)
T ss_dssp ECCCCSCBHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 999999999999864
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=126.70 Aligned_cols=93 Identities=20% Similarity=0.323 Sum_probs=82.0
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
...++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+++..|+
T Consensus 26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 105 (362)
T 2bdw_A 26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 105 (362)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 3456799999999999999999997 468999999997543 3456778999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++.+
T Consensus 106 v~e~~~gg~L~~~l~~ 121 (362)
T 2bdw_A 106 VFDLVTGGELFEDIVA 121 (362)
T ss_dssp EECCCCSCBHHHHHTT
T ss_pred EEecCCCCCHHHHHHH
Confidence 9999999999998853
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=127.19 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=83.9
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-----hHHHHHHHHHHHHHhcCCCCCccceeEEEE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-----ERAFRSFDSECEVLRNVCHRNLIKILSSCS 500 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~ 500 (524)
.++....++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++.
T Consensus 19 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~ 98 (345)
T 3hko_A 19 GSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE 98 (345)
T ss_dssp BCHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred chhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc
Confidence 44556678899999999999999999996 568899999996542 234578999999999999999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHH
Q 040301 501 NPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
+.+..++|||||++|+|.++++
T Consensus 99 ~~~~~~lv~e~~~gg~L~~~l~ 120 (345)
T 3hko_A 99 DEQYICLVMELCHGGHLLDKLN 120 (345)
T ss_dssp CSSEEEEEEECCCSCBHHHHEE
T ss_pred cCCeEEEEEeCCCCCcHHHHHH
Confidence 9999999999999999999874
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-12 Score=123.78 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=80.0
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|+..+.||+|+||.||+|.. .+++.+|+|.+.... .....+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 46789999999999999999997 467889999997543 3456788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
|++|+|.+++++
T Consensus 83 ~~g~~L~~~l~~ 94 (321)
T 1tki_A 83 ISGLDIFERINT 94 (321)
T ss_dssp CCCCBHHHHHTS
T ss_pred CCCCCHHHHHHh
Confidence 999999999853
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-12 Score=121.85 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=80.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.+.|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.|.+|+.++++++||||+++++++.+++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 35699999999999999999996 468899999985432 34567899999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 90 ~e~~~g~~L~~~l~~ 104 (294)
T 4eqm_A 90 MEYIEGPTLSEYIES 104 (294)
T ss_dssp EECCCSCBHHHHHHH
T ss_pred EeCCCCCCHHHHHHh
Confidence 999999999999864
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=134.41 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=83.8
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
..++....+|+..+.||+|+||.||+|.+. ++..||||.++.... ..++|.+|+.+|++++|||||+++++|..++..
T Consensus 213 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~ 291 (495)
T 1opk_A 213 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF 291 (495)
T ss_dssp SCCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred cccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcE
Confidence 344555677899999999999999999975 478899999975432 357899999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 292 ~lv~E~~~~g~L~~~l~~ 309 (495)
T 1opk_A 292 YIITEFMTYGNLLDYLRE 309 (495)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEEccCCCCHHHHHHh
Confidence 999999999999999974
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=128.48 Aligned_cols=101 Identities=20% Similarity=0.292 Sum_probs=86.1
Q ss_pred ccchhhhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccc
Q 040301 423 RTSYLDIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIK 494 (524)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~ 494 (524)
.+...++....++|+..+.||+|+||.||+|.+ .+++.||||++.... ....+.+.+|+++++++ +||||++
T Consensus 11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~ 90 (359)
T 3vhe_A 11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 90 (359)
T ss_dssp CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 445677778889999999999999999999983 345789999997643 34557899999999999 7999999
Q ss_pred eeEEEEcCC-cceEEEcccCCCCHHHHHHh
Q 040301 495 ILSSCSNPD-FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 495 l~~~~~~~~-~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++++.+.+ ..++|||||++|+|.+++++
T Consensus 91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~ 120 (359)
T 3vhe_A 91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRS 120 (359)
T ss_dssp EEEEECSTTSCCEEEEECCTTEEHHHHHHT
T ss_pred eeeeeecCCCceEEEEEecCCCcHHHHHHh
Confidence 999998755 48999999999999999964
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=127.05 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=81.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.+.|+..+.||+|+||.||+|.. .+++.+|+|.+..........+.+|+++++.++||||+++++++.+....++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 35799999999999999999997 46889999999876555567899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
|++|+|.++++
T Consensus 130 ~~gg~L~~~l~ 140 (387)
T 1kob_A 130 LSGGELFDRIA 140 (387)
T ss_dssp CCCCBHHHHTT
T ss_pred CCCCcHHHHHH
Confidence 99999999875
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=126.89 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=72.6
Q ss_pred cccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCC
Q 040301 437 NECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNI 515 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~g 515 (524)
...+.||+|+||.||+|.. .+|+.||+|.+........+.+.+|++++++++||||+++++++.+.+..++|||||++|
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 3356899999999999996 568999999998766566778999999999999999999999999999999999999999
Q ss_pred CHHHHHH
Q 040301 516 SITIIRR 522 (524)
Q Consensus 516 sL~~~l~ 522 (524)
+|.+++.
T Consensus 172 ~L~~~l~ 178 (373)
T 2x4f_A 172 ELFDRII 178 (373)
T ss_dssp EEHHHHH
T ss_pred cHHHHHH
Confidence 9999885
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=124.94 Aligned_cols=101 Identities=23% Similarity=0.258 Sum_probs=87.5
Q ss_pred ccchhhhhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccce
Q 040301 423 RTSYLDIQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKI 495 (524)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l 495 (524)
.+..+++....++|+..+.||+|+||.||+|... +++.||+|.+.... ......+.+|+++++.++||||+++
T Consensus 14 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 93 (322)
T 1p4o_A 14 VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRL 93 (322)
T ss_dssp CCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCE
T ss_pred ccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeee
Confidence 3455677788889999999999999999999853 36779999997543 3455679999999999999999999
Q ss_pred eEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 496 LSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 496 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++++.+++..++||||+++|+|.+++++
T Consensus 94 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 121 (322)
T 1p4o_A 94 LGVVSQGQPTLVIMELMTRGDLKSYLRS 121 (322)
T ss_dssp EEEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred EEEEccCCccEEEEEeCCCCcHHHHHHH
Confidence 9999999999999999999999999864
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-12 Score=122.41 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=80.7
Q ss_pred hccccccCcccCCCCceEEEEEeC-CC-------CEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DW-------TNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
.++|...+.||+|+||.||+|... ++ ..||+|.+........+.+.+|++++++++||||+++++++.+++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 457888999999999999999863 23 4699999977665667889999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++++
T Consensus 87 ~~lv~e~~~~~~L~~~l~~ 105 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKK 105 (289)
T ss_dssp CEEEEECCTTCBHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHh
Confidence 9999999999999999864
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-12 Score=121.93 Aligned_cols=90 Identities=22% Similarity=0.397 Sum_probs=79.5
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--CcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~lv 508 (524)
.++|+..+.||+|+||.||+|+.. ++.+|||.+.... ....+.|.+|+.++++++||||+++++++.+. +..++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 457888999999999999999984 7889999997543 34567899999999999999999999999887 778999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 88 ~e~~~~~~L~~~l~~ 102 (271)
T 3kmu_A 88 THWMPYGSLYNVLHE 102 (271)
T ss_dssp EECCTTCBHHHHHHS
T ss_pred ecccCCCcHHHHHhh
Confidence 999999999999864
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=123.78 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=80.2
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.+.|...+.||+|+||.||+|.. .+++.||+|.+..... ...+.+.+|+.++++++||||+++++++.+++..
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 35689999999999999999997 4689999999975431 1357799999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 90 ~lv~e~~~~~~L~~~l~~ 107 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAE 107 (326)
T ss_dssp EEEEECCCSCBHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHh
Confidence 999999999999999854
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-12 Score=123.43 Aligned_cols=96 Identities=27% Similarity=0.348 Sum_probs=83.0
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEE
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCS 500 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~ 500 (524)
++....++|...+.||+|+||.||+|.. .+++.||||.+.... ....+.+.+|++++++++||||+++++++.
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~ 96 (314)
T 2ivs_A 17 KWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS 96 (314)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred ccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEe
Confidence 3444567899999999999999999985 234789999997543 445678999999999999999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++..++||||+++|+|.+++++
T Consensus 97 ~~~~~~lv~e~~~~~~L~~~l~~ 119 (314)
T 2ivs_A 97 QDGPLLLIVEYAKYGSLRGFLRE 119 (314)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHH
T ss_pred cCCceEEEEeecCCCCHHHHHHH
Confidence 99999999999999999999864
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-12 Score=126.46 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=80.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+++++.++|||||++++++.+.+..|+|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 46799999999999999999996 468899999997543 23356788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 94 ~e~~~gg~L~~~l~~ 108 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQ 108 (384)
T ss_dssp ECCCTTEEHHHHHHT
T ss_pred EecCCCCcHHHHHHh
Confidence 999999999999864
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=122.67 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=86.0
Q ss_pred chhhhhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 425 SYLDIQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 425 ~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
.++++....++|+..+.||+|+||.||+|... ++..||+|.+..... ..+.+.+|++++++++||||+++++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 82 (288)
T 3kfa_A 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 82 (288)
T ss_dssp TCCTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCST-HHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred chhcccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEccCC
Confidence 34566667788999999999999999999974 478899999975432 4577899999999999999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 83 ~~~~v~e~~~~~~L~~~~~~ 102 (288)
T 3kfa_A 83 PFYIITEFMTYGNLLDYLRE 102 (288)
T ss_dssp SEEEEEECCTTEEHHHHHHH
T ss_pred CEEEEEEcCCCCcHHHHHHh
Confidence 99999999999999999864
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-12 Score=120.36 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=81.3
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..++|+..+.||+|+||.||+|...+++.||+|.+..... ..+++.+|++++++++||||+++++++.+++..++||||
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (267)
T 3t9t_A 6 DPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF 84 (267)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred chhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence 4467889999999999999999987888999999976442 346789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 85 ~~~~~L~~~~~~ 96 (267)
T 3t9t_A 85 MEHGCLSDYLRT 96 (267)
T ss_dssp CTTCBHHHHHHH
T ss_pred CCCCcHHHHHhh
Confidence 999999999864
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-12 Score=126.09 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=82.5
Q ss_pred hhhccccccCcccCC--CCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 431 RATDEFNECNLLGTG--SFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g--~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...++|+..+.||+| +||.||+|+.. +++.||||++.... ....+.+.+|+++++.++|||||++++++.+++..
T Consensus 22 ~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 101 (389)
T 3gni_B 22 PEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNEL 101 (389)
T ss_dssp CCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred CCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEE
Confidence 345679999999999 99999999974 78999999997543 34567788999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 102 ~lv~e~~~~~~L~~~l~~ 119 (389)
T 3gni_B 102 WVVTSFMAYGSAKDLICT 119 (389)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEEccCCCCHHHHHhh
Confidence 999999999999999864
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-12 Score=130.85 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=82.6
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...++...++|+..+.||+|+||.||+|.+.++..||||.++.... ..++|.+|+++|++++||||+++++++.+ +..
T Consensus 176 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~ 253 (452)
T 1fmk_A 176 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPI 253 (452)
T ss_dssp TTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred ccccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-Cce
Confidence 3445566778999999999999999999987777899999976432 35679999999999999999999999876 779
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++|||||++|+|.++++
T Consensus 254 ~iv~e~~~~gsL~~~l~ 270 (452)
T 1fmk_A 254 YIVTEYMSKGSLLDFLK 270 (452)
T ss_dssp EEEECCCTTCBHHHHHS
T ss_pred EEEehhhcCCCHHHHHH
Confidence 99999999999999986
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=120.54 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=80.9
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.+.|+..+.||+|+||.||+|... ++..+|+|++........+.+.+|++++++++||||+++++++.+++..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 457899999999999999999974 5778999999876555567899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+++|+|.+++.
T Consensus 88 ~~~~~L~~~~~ 98 (277)
T 3f3z_A 88 CTGGELFERVV 98 (277)
T ss_dssp CCSCBHHHHHH
T ss_pred cCCCcHHHHHH
Confidence 99999999875
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-12 Score=126.02 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=79.6
Q ss_pred hccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.++|+..+.||+|+||.||+|++. +++.||||+++... .....++.+|+.++++++|||||++++++..+...
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 457889999999999999999942 45689999996543 44566799999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 150 ~lv~e~~~~g~L~~~l~~ 167 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRE 167 (367)
T ss_dssp EEEEECCTTEEHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHh
Confidence 999999999999999864
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-12 Score=124.36 Aligned_cols=91 Identities=23% Similarity=0.218 Sum_probs=80.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|+. .+|+.||+|.+.... ....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 35789999999999999999997 468999999997543 23456788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 120 ~e~~~gg~L~~~l~~ 134 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRR 134 (350)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EcCCCCCcHHHHHHH
Confidence 999999999999864
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-12 Score=128.38 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=79.6
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
..++|+..+.||+|+||.||+|.. .+|+.+|+|.+.... ....+.+.+|+++++.++|||||++++++.+++..|+|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 456799999999999999999996 578899999997543 34567789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++.+
T Consensus 89 ~E~~~gg~L~~~i~~ 103 (444)
T 3soa_A 89 FDLVTGGELFEDIVA 103 (444)
T ss_dssp ECCCBCCBHHHHHHH
T ss_pred EEeCCCCCHHHHHHH
Confidence 999999999998853
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-12 Score=122.93 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=79.8
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 507 (524)
.++|+..+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|+.++.++ +||||+++++++.+++..|+
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 35789999999999999999997 468899999997543 34456788999999987 89999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 88 v~e~~~gg~L~~~l~~ 103 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQR 103 (345)
T ss_dssp EECCCCSCBHHHHHHH
T ss_pred EEeCCCCCcHHHHHHH
Confidence 9999999999998864
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.1e-12 Score=124.56 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=80.2
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..++|+..+.||+|+||.||++... +++.||||.+..... ..+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 96 (361)
T 3uc3_A 18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME 96 (361)
T ss_dssp CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence 3467999999999999999999974 789999999975432 23568899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
||++|+|.+++++
T Consensus 97 ~~~~~~L~~~l~~ 109 (361)
T 3uc3_A 97 YASGGELYERICN 109 (361)
T ss_dssp CCCSCBHHHHHHH
T ss_pred eCCCCCHHHHHHh
Confidence 9999999998853
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.7e-12 Score=122.09 Aligned_cols=91 Identities=23% Similarity=0.290 Sum_probs=79.0
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC--cceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD--FKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~--~~~lv 508 (524)
.+.|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 357899999999999999999974 58999999997543 334577889999999999999999999998765 67999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 88 ~e~~~~~~L~~~l~~ 102 (319)
T 4euu_A 88 MEFCPCGSLYTVLEE 102 (319)
T ss_dssp EECCTTCBHHHHHHS
T ss_pred EeCCCCCCHHHHHHH
Confidence 999999999999864
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-12 Score=119.83 Aligned_cols=90 Identities=23% Similarity=0.202 Sum_probs=80.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.+.|...+.||+|+||.||+|.. .++..+|+|.+.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 35789999999999999999996 468899999997644 2345788999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|.+++.
T Consensus 101 ~~~~~~L~~~l~ 112 (285)
T 3is5_A 101 TCEGGELLERIV 112 (285)
T ss_dssp CCSCCBHHHHHH
T ss_pred eCCCCcHHHHHH
Confidence 999999999884
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-12 Score=129.34 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=81.7
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-cc
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-FK 505 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-~~ 505 (524)
.++....++|+..+.||+|+||.||+|.+. ++.||||.++... ..+.|.+|+++|++++|||||++++++...+ ..
T Consensus 186 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 262 (450)
T 1k9a_A 186 SGWALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL 262 (450)
T ss_dssp TTCBCCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCE
T ss_pred cccccChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCce
Confidence 444556678999999999999999999984 6799999997543 4567999999999999999999999987765 79
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 263 ~iv~e~~~~g~L~~~l~~ 280 (450)
T 1k9a_A 263 YIVTEYMAKGSLVDYLRS 280 (450)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHh
Confidence 999999999999999964
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-12 Score=124.00 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=74.8
Q ss_pred hhccccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
..++|+..+.||+|+||.||+|+. .+++.||+|.+.... ......+.+|+.+++.++||||+++++++..++
T Consensus 15 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 94 (327)
T 3a62_A 15 RPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG 94 (327)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSS
T ss_pred CHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC
Confidence 346799999999999999999996 468899999997542 223456889999999999999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..|+||||+++|+|.+++++
T Consensus 95 ~~~lv~e~~~~~~L~~~l~~ 114 (327)
T 3a62_A 95 KLYLILEYLSGGELFMQLER 114 (327)
T ss_dssp CEEEEEECCTTEEHHHHHHH
T ss_pred EEEEEEeCCCCCcHHHHHHh
Confidence 99999999999999998863
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=122.41 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=77.8
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc----c
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF----K 505 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~----~ 505 (524)
....++|+..+.||+|+||.||+|+.. ++.||||++..... ....+.+|+.++++++|||||++++++..... .
T Consensus 20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 97 (322)
T 3soc_A 20 YFQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL 97 (322)
T ss_dssp EETTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred ccchhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceE
Confidence 344568999999999999999999975 68899999975443 34456679999999999999999999987543 6
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 98 ~lv~e~~~~g~L~~~l~~ 115 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKA 115 (322)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHh
Confidence 999999999999999864
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.6e-12 Score=123.73 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=79.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 507 (524)
.++|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|.++++.+ +||||+++++++.+.+..|+
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 46799999999999999999997 468999999997543 23456688999999988 79999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++++
T Consensus 102 v~E~~~gg~L~~~l~~ 117 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQK 117 (353)
T ss_dssp EEECCCSCBHHHHHHH
T ss_pred EEeCCCCCcHHHHHHH
Confidence 9999999999999864
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-12 Score=120.57 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=77.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|...+.||+|+||.||+|.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL 87 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence 45789999999999999999997 47899999999865544556788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+++|+|.+++.
T Consensus 88 ~~~~~L~~~l~ 98 (304)
T 2jam_A 88 VSGGELFDRIL 98 (304)
T ss_dssp CCSCBHHHHHH
T ss_pred CCCccHHHHHH
Confidence 99999999885
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=122.25 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=83.0
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEE
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSC 499 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~ 499 (524)
++....++|+..+.||+|+||.||+|+. .+++.||||.+.... ....+.+.+|+.+++++ +||||+++++++
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~ 96 (313)
T 1t46_A 17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGAC 96 (313)
T ss_dssp GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEE
Confidence 3445567899999999999999999984 346789999997544 34567899999999999 999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++..++||||+++|+|.+++++
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~ 120 (313)
T 1t46_A 97 TIGGPTLVITEYCCYGDLLNFLRR 120 (313)
T ss_dssp CSSSSCEEEEECCTTEEHHHHHHH
T ss_pred ecCCCcEEEEecCCCCCHHHHHHh
Confidence 999999999999999999999864
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-12 Score=123.27 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=81.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.++++++||||+++++++..++..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 46799999999999999999997 468899999997643 4456789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 112 ~~~~~~L~~~l~~ 124 (360)
T 3eqc_A 112 HMDGGSLDQVLKK 124 (360)
T ss_dssp CCTTCBHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9999999999864
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=120.06 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=78.5
Q ss_pred cccccc-CcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNEC-NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e 510 (524)
+.|+.. +.||+|+||.||+|.. .+++.||||++........+.+.+|++++.++ +||||+++++++.+++..++|||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e 91 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE 91 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence 457764 6899999999999995 57899999999765544567889999999985 79999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 92 ~~~~~~L~~~l~~ 104 (316)
T 2ac3_A 92 KMRGGSILSHIHK 104 (316)
T ss_dssp CCTTCBHHHHHHH
T ss_pred cCCCCcHHHHHhc
Confidence 9999999999853
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=123.11 Aligned_cols=95 Identities=21% Similarity=0.326 Sum_probs=81.2
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe--------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEE
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI--------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSS 498 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~ 498 (524)
+....++|+..+.||+|+||.||+|.. .++..||||++.... ....+.+.+|+++++++ +||||++++++
T Consensus 30 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 109 (334)
T 2pvf_A 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGA 109 (334)
T ss_dssp TBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred ccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEE
Confidence 344567899999999999999999985 246789999997543 44567899999999999 99999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..++..++||||+++|+|.+++++
T Consensus 110 ~~~~~~~~lv~e~~~~~~L~~~l~~ 134 (334)
T 2pvf_A 110 CTQDGPLYVIVEYASKGNLREYLRA 134 (334)
T ss_dssp ECSSSCCEEEEECCTTCBHHHHHHT
T ss_pred EccCCceEEEEECCCCCcHHHHHHH
Confidence 9999999999999999999999864
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.4e-12 Score=123.34 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=79.7
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~ 505 (524)
...++|+..+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|.+++..+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 3457899999999999999999997 468899999997643 22356678899999876 999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|+||||+++|+|.+++++
T Consensus 94 ~lv~E~~~gg~L~~~l~~ 111 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQS 111 (345)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEeCCCCCcHHHHHHH
Confidence 999999999999999864
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-12 Score=132.36 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=83.0
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...++...++|+..+.||+|+||.||+|.+.++..||||+++.... ..++|.+|+++|++++|||||++++++.+ +..
T Consensus 259 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~ 336 (535)
T 2h8h_A 259 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPI 336 (535)
T ss_dssp TTCSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred ccceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccc
Confidence 4555666778999999999999999999987777899999976442 35679999999999999999999999876 779
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++|||||++|+|.++++
T Consensus 337 ~lv~e~~~~gsL~~~l~ 353 (535)
T 2h8h_A 337 YIVTEYMSKGSLLDFLK 353 (535)
T ss_dssp EEEECCCTTEEHHHHHS
T ss_pred eEeeehhcCCcHHHHHh
Confidence 99999999999999986
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-12 Score=124.46 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=73.5
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.||+|+||.||+|... +++.||||.+.... ..+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 4567999999999999999999974 57889999997543 34668899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 129 ~~~~~~L~~~l~~ 141 (349)
T 2w4o_A 129 LVTGGELFDRIVE 141 (349)
T ss_dssp CCCSCBHHHHHTT
T ss_pred eCCCCCHHHHHHh
Confidence 9999999998854
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-12 Score=125.26 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=76.8
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|... +++.||||.+.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 367999999999999999999974 78899999996543 2334678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
||++|+|.++++
T Consensus 86 ~~~~~~L~~~l~ 97 (323)
T 3tki_A 86 YCSGGELFDRIE 97 (323)
T ss_dssp CCTTEEGGGGSB
T ss_pred cCCCCcHHHHHh
Confidence 999999988764
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-12 Score=125.25 Aligned_cols=94 Identities=21% Similarity=0.323 Sum_probs=81.0
Q ss_pred hhhhccccccCcccCCCCceEEEEEe--------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI--------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSC 499 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~ 499 (524)
....++|...+.||+|+||.||+|.. .++..||||++.... ....+++.+|+++++++ +||||+++++++
T Consensus 65 ~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~ 144 (382)
T 3tt0_A 65 ELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGAC 144 (382)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeee
Confidence 34456889999999999999999985 123579999997543 44567899999999999 999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+++..++||||+++|+|.+++++
T Consensus 145 ~~~~~~~lv~e~~~~g~L~~~l~~ 168 (382)
T 3tt0_A 145 TQDGPLYVIVEYASKGNLREYLQA 168 (382)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHH
T ss_pred ccCCceEEEEEecCCCcHHHHHHH
Confidence 999999999999999999999864
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=118.25 Aligned_cols=92 Identities=23% Similarity=0.183 Sum_probs=81.4
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..+.||+|+||.||+|... +++.||+|.+.... .....++.+|+..+..+ +||||+++++++.+++..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 4567999999999999999999974 78999999997532 34567788999999999 99999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 89 v~e~~~~~~L~~~l~~ 104 (289)
T 1x8b_A 89 QNEYCNGGSLADAISE 104 (289)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEEecCCCcHHHHHHh
Confidence 9999999999999864
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=118.47 Aligned_cols=90 Identities=26% Similarity=0.395 Sum_probs=77.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
++|.....||+|+||.||+|.. .+++.||||.+........+.+.+|+.+++.++||||+++++++...+..++||||+
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 3455566999999999999996 568899999997765556678999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 102 ~~~~L~~~l~~ 112 (295)
T 2clq_A 102 PGGSLSALLRS 112 (295)
T ss_dssp SEEEHHHHHHH
T ss_pred CCCCHHHHHHh
Confidence 99999999864
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-12 Score=119.78 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=78.9
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.||+|+||.||+|... +++.+|+|.+........+.+.+|+++++.++||||+++++++..++..++|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 4467999999999999999999974 588999999976554556789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 97 ~~~~~~l~~~~~~ 109 (302)
T 2j7t_A 97 FCPGGAVDAIMLE 109 (302)
T ss_dssp CCTTEEHHHHHHH
T ss_pred eCCCCcHHHHHHh
Confidence 9999999998753
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.6e-12 Score=120.31 Aligned_cols=94 Identities=15% Similarity=0.079 Sum_probs=80.3
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCc
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDF 504 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~ 504 (524)
....++|+..+.||+|+||.||++.. .+++.||||++........+.+.+|+++++.++||||+++++++.. ...
T Consensus 25 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (317)
T 2buj_A 25 IIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE 104 (317)
T ss_dssp EETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEE
T ss_pred EECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCce
Confidence 34457899999999999999999996 5789999999976666667889999999999999999999999973 447
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++++
T Consensus 105 ~~lv~e~~~~~~L~~~l~~ 123 (317)
T 2buj_A 105 AWLLLPFFKRGTLWNEIER 123 (317)
T ss_dssp EEEEEECCTTCBHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHHH
Confidence 8999999999999999864
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-12 Score=119.37 Aligned_cols=94 Identities=18% Similarity=0.292 Sum_probs=81.3
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
+++....++|+..+.||+|+||.||+|...++..||+|.+..... ..+.+.+|++++++++||||+++++++. .+..+
T Consensus 6 ~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~ 83 (279)
T 1qpc_A 6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIY 83 (279)
T ss_dssp CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred hhcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcE
Confidence 345556678999999999999999999988788899999975432 3567899999999999999999999986 55689
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+||||+++|+|.++++
T Consensus 84 ~v~e~~~~~~L~~~l~ 99 (279)
T 1qpc_A 84 IITEYMENGSLVDFLK 99 (279)
T ss_dssp EEEECCTTCBHHHHTT
T ss_pred EEEecCCCCCHHHHHh
Confidence 9999999999999885
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=116.96 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=80.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 46799999999999999999996 468899999997543 345577889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+++|+|.+++.
T Consensus 85 e~~~~~~l~~~~~ 97 (284)
T 3kk8_A 85 DLVTGGELFEDIV 97 (284)
T ss_dssp CCCCSCBHHHHHH
T ss_pred ecCCCCCHHHHHH
Confidence 9999999988774
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=9.4e-12 Score=118.04 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=80.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ......+.+|++++++++||||+++++++.+.+..++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 456799999999999999999996 467789999996543 2235678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 87 v~e~~~~~~l~~~l~~ 102 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQK 102 (279)
T ss_dssp EECCCTTEEHHHHHHH
T ss_pred EEecCCCCcHHHHHHh
Confidence 9999999999998864
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-12 Score=123.28 Aligned_cols=96 Identities=19% Similarity=0.300 Sum_probs=80.8
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEE
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSC 499 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~ 499 (524)
++....++|...+.||+|+||.||+|.. .++..||||.+.... ....+.+.+|+.+++++ +||||+++++++
T Consensus 39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 118 (344)
T 1rjb_A 39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC 118 (344)
T ss_dssp GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 4455678899999999999999999995 235679999997543 33456789999999999 999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...+..++||||+++|+|.+++++
T Consensus 119 ~~~~~~~lv~e~~~~g~L~~~l~~ 142 (344)
T 1rjb_A 119 TLSGPIYLIFEYCCYGDLLNYLRS 142 (344)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHT
T ss_pred eeCCccEEEEecCCCCcHHHHHhh
Confidence 999999999999999999999864
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-12 Score=120.63 Aligned_cols=93 Identities=19% Similarity=0.304 Sum_probs=78.9
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+...++|+..+.||+|+||.||+|...+++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..++
T Consensus 17 q~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 96 (311)
T 3niz_A 17 QGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTL 96 (311)
T ss_dssp ECSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEE
T ss_pred cchHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEE
Confidence 34457899999999999999999998889999999996543 2235678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||+ |+|.+++.+
T Consensus 97 v~e~~~-~~l~~~~~~ 111 (311)
T 3niz_A 97 VFEFME-KDLKKVLDE 111 (311)
T ss_dssp EEECCS-EEHHHHHHT
T ss_pred EEcCCC-CCHHHHHHh
Confidence 999998 488887753
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-10 Score=110.23 Aligned_cols=297 Identities=12% Similarity=0.121 Sum_probs=198.6
Q ss_pred ccccCCccccccc-CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCC---CCCCCChhHhcCcccccEEE
Q 040301 32 FSGHIPNTFGNLR-HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNP---LGGILPPVIGNFSASFQNFY 107 (524)
Q Consensus 32 l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~~~~L~~L~ 107 (524)
++......|.++. .|+.+.+-. .++.+.. .+|.++++|+.+.+..|. ++.+....|.... +|+.+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~--------~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~-~L~~i~ 120 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGS--------NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCS-ELTDIP 120 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT-TCCEECT--------TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCT-TCCBCG
T ss_pred eeEcCHhhccCCCCcCEEEEECC-CeeEEhH--------HHhhCCccCceEeecCCCCCeeeEechhhchhcc-cceeec
Confidence 3434456677764 589999865 4777765 789999999999998764 5555556676665 777777
Q ss_pred eccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccc
Q 040301 108 AFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 108 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 187 (524)
+..+ +.......|.+..+|+.+.+..+ +..+...+|..+.+|+.+.+..+ ++..-..+|. ...|+.+.+..+-..
T Consensus 121 ~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~- 195 (394)
T 4gt6_A 121 ILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR- 195 (394)
T ss_dssp GGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-
T ss_pred cCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-
Confidence 6654 44455667888899999998654 44466778888999999988765 4434344454 467888888765432
Q ss_pred cCCccccCCCCCCEEEccCCcCCCccChhc--------------cCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcC
Q 040301 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSL--------------WSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253 (524)
Q Consensus 188 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 253 (524)
.....|..+.+++......+.... ....+ .....+..+.+.. .+...-...|..+..|+.+.+.
T Consensus 196 i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp 273 (394)
T 4gt6_A 196 IGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMP 273 (394)
T ss_dssp ECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECC
T ss_pred cccchhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecc
Confidence 455667778888887766554331 11111 1122344444432 2333345678889999999997
Q ss_pred CCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 254 RNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 254 ~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
.+...-....+..+++|+.+.+.. .++......|..+.+|+.+++..+ ++.....+|..+.+|+.+.+..+ ++. +.
T Consensus 274 ~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I~ 349 (394)
T 4gt6_A 274 DSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-IP 349 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-CC
T ss_pred cccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-Eh
Confidence 665432236788899999999974 566566678999999999999765 55566678999999999999754 321 11
Q ss_pred --CCCcCCCCCcccccCC
Q 040301 334 --VKGSFKNFSAESFFGN 349 (524)
Q Consensus 334 --~~~~~~~~~~~~~~~n 349 (524)
.......+..+.+.++
T Consensus 350 ~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp GGGGTTCTTCCEEEESSC
T ss_pred HhHhhCCCCCCEEEECCc
Confidence 1122345555565554
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=120.29 Aligned_cols=92 Identities=21% Similarity=0.198 Sum_probs=80.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
..+.|+..+.||+|+||.||+|.. .+++.||+|.+..... ...+++.+|+.+++.++||||+++++++.+++.
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 89 (321)
T 2a2a_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD 89 (321)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence 346799999999999999999997 4688999999975431 135779999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++++
T Consensus 90 ~~lv~e~~~~~~L~~~l~~ 108 (321)
T 2a2a_A 90 VVLILELVSGGELFDFLAQ 108 (321)
T ss_dssp EEEEECCCCSCBHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHh
Confidence 9999999999999999864
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=7e-12 Score=127.70 Aligned_cols=91 Identities=22% Similarity=0.213 Sum_probs=80.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|...+.||+|+||.||+|.. .+|+.||||++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 35789999999999999999997 4789999999975432 2356789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++.+
T Consensus 95 ~E~~~gg~L~~~l~~ 109 (476)
T 2y94_A 95 MEYVSGGELFDYICK 109 (476)
T ss_dssp EECCSSEEHHHHTTS
T ss_pred EeCCCCCcHHHHHHh
Confidence 999999999998853
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.2e-12 Score=124.55 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=77.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 507 (524)
.++|+..+.||+|+||.||+|+. .+++.||+|+++... ....+.+.+|..++.++ +|||||++++++.+++..|+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 45799999999999999999997 467889999997643 22334578899999876 89999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++++
T Consensus 131 V~E~~~gg~L~~~l~~ 146 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQR 146 (396)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEEcCCCCcHHHHHHH
Confidence 9999999999998864
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.7e-12 Score=129.45 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=81.2
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..+.||+|+||.||+|+. .+|+.||||++.... ......+.+|+++++.++|||||++++++.+.+..|+
T Consensus 182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l 261 (576)
T 2acx_A 182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL 261 (576)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence 456799999999999999999997 478999999997543 2235678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||+||+|.+++++
T Consensus 262 VmEy~~gg~L~~~l~~ 277 (576)
T 2acx_A 262 VLTLMNGGDLKFHIYH 277 (576)
T ss_dssp EECCCCSCBHHHHHHS
T ss_pred EEEcCCCCcHHHHHHh
Confidence 9999999999999864
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=119.90 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=79.9
Q ss_pred hccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~ 505 (524)
.++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. ....
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 35788999999999999999984 4578899999987666667789999999999999999999999874 5568
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 102 ~lv~e~~~~~~L~~~l~~ 119 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQR 119 (327)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEeecCCCCHHHHHHh
Confidence 999999999999999864
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=120.48 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=78.5
Q ss_pred hhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
...++|+..+.||+|+||.||+|.. .+++.||||.+.... .....++.+|+.++++++||||+++++++...+
T Consensus 27 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 106 (327)
T 2yfx_A 27 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 106 (327)
T ss_dssp CCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC
Confidence 3456899999999999999999984 346789999996443 445678999999999999999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 107 ~~~lv~e~~~~~~L~~~l~~ 126 (327)
T 2yfx_A 107 PRFILMELMAGGDLKSFLRE 126 (327)
T ss_dssp SCEEEEECCTTEEHHHHHHH
T ss_pred CcEEEEecCCCCcHHHHHHh
Confidence 99999999999999999864
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.5e-12 Score=120.39 Aligned_cols=89 Identities=19% Similarity=0.316 Sum_probs=64.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 46799999999999999999996 468999999997543 2234678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|++ |+|.++++
T Consensus 84 ~~~-~~L~~~l~ 94 (317)
T 2pmi_A 84 FMD-NDLKKYMD 94 (317)
T ss_dssp CCC-CBHHHHHH
T ss_pred ecC-CCHHHHHH
Confidence 998 69999885
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=117.60 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=79.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc---chHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ---LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..+.||+|+||.||+|.. .+++.||+|.+... .....+.+.+|+.++++++||||+++++++..++..++
T Consensus 30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 109 (310)
T 2wqm_A 30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI 109 (310)
T ss_dssp SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence 345799999999999999999996 57899999999752 24456789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 110 v~e~~~~~~L~~~l~~ 125 (310)
T 2wqm_A 110 VLELADAGDLSRMIKH 125 (310)
T ss_dssp EEECCCSCBHHHHHHH
T ss_pred EEecCCCCCHHHHHHH
Confidence 9999999999999863
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=126.70 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=77.2
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-------------HHHHHHHHHHHHHhcCCCCCccceeE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-------------RAFRSFDSECEVLRNVCHRNLIKILS 497 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-------------~~~~~~~~Ei~~l~~l~H~niv~l~~ 497 (524)
..+.|...+.||+|+||.||+|.. .+++.||+|.+..... ...+.+.+|+.++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 456799999999999999999997 4678999999975331 23467899999999999999999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHH
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
++.++...++|||||++|+|.+++.
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~ 138 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQII 138 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHH
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHH
Confidence 9999999999999999999999875
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=127.87 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=75.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.+.|+..+.||+|+||.||+|+. .++..||+|.+.... ......+.+|+.+++.++|||||+++++|.+....|+||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 45699999999999999999997 468899999997543 223567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
|||++|+|.+++.
T Consensus 116 e~~~~g~L~~~~~ 128 (494)
T 3lij_A 116 ECYKGGELFDEII 128 (494)
T ss_dssp ECCCSCBHHHHHH
T ss_pred ecCCCCcHHHHHH
Confidence 9999999998875
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=116.87 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=80.9
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|...+.||+|+||.||+|... +++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++.+++..++
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l 92 (294)
T 2rku_A 13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV 92 (294)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEE
Confidence 3467899999999999999999974 57889999997542 3456788999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 93 v~e~~~~~~L~~~~~~ 108 (294)
T 2rku_A 93 VLELCRRRSLLELHKR 108 (294)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEecCCCCCHHHHHHh
Confidence 9999999999998753
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-12 Score=124.53 Aligned_cols=91 Identities=23% Similarity=0.290 Sum_probs=78.9
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC--cceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD--FKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~--~~~lv 508 (524)
.+.|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 357899999999999999999974 58999999997543 334567889999999999999999999998765 67999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++++
T Consensus 88 ~e~~~~g~L~~~l~~ 102 (396)
T 4eut_A 88 MEFCPCGSLYTVLEE 102 (396)
T ss_dssp ECCCTTEEHHHHTTS
T ss_pred EecCCCCCHHHHHHh
Confidence 999999999999864
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=116.88 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=79.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~~l 507 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++.. ....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 46799999999999999999997 468999999997543 3456789999999999999999999998854 567899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 85 v~e~~~~~~L~~~l~~ 100 (279)
T 2w5a_A 85 VMEYCEGGDLASVITK 100 (279)
T ss_dssp EEECCTTEEHHHHHHH
T ss_pred EEeCCCCCCHHHHHHh
Confidence 9999999999999863
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=119.75 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=83.4
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeC-CC-----CEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTIS-DW-----TNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSS 498 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~-----~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~ 498 (524)
+.+....++|+..+.||+|+||.||+|... ++ ..||+|.+.... ....+.+.+|+++++.+ +||||++++++
T Consensus 39 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~ 118 (333)
T 2i1m_A 39 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA 118 (333)
T ss_dssp GGGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred ccccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence 345666788999999999999999999963 22 479999997643 34567899999999999 89999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..++..++||||+++|+|.+++++
T Consensus 119 ~~~~~~~~lv~e~~~~g~L~~~l~~ 143 (333)
T 2i1m_A 119 CTHGGPVLVITEYCCYGDLLNFLRR 143 (333)
T ss_dssp ECSSSSCEEEEECCTTEEHHHHHHH
T ss_pred EecCCceEEEEecCCCCcHHHHHHH
Confidence 9999999999999999999999863
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=116.88 Aligned_cols=92 Identities=20% Similarity=0.333 Sum_probs=80.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..+.||+|+||.||+|+. .+++.||||.+..... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 88 (278)
T 3cok_A 9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL 88 (278)
T ss_dssp SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence 346799999999999999999996 5789999999975432 224678999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 89 v~e~~~~~~L~~~l~~ 104 (278)
T 3cok_A 89 VLEMCHNGEMNRYLKN 104 (278)
T ss_dssp EEECCTTEEHHHHHHT
T ss_pred EEecCCCCcHHHHHhh
Confidence 9999999999999864
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=116.83 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=79.6
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch------HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
++|+..+.||+|+||.||+|... +++.||+|.+..... ...+.+.+|+.++++++||||+++++++..++..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 56889999999999999999974 689999999975431 13578999999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 85 lv~e~~~~~~L~~~l~~ 101 (283)
T 3bhy_A 85 LILELVSGGELFDFLAE 101 (283)
T ss_dssp EEEECCCSCBHHHHHHH
T ss_pred EEEeecCCCcHHHHHHh
Confidence 99999999999999853
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=116.13 Aligned_cols=91 Identities=22% Similarity=0.218 Sum_probs=80.2
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|...+.||+|+||.||+|... +++.||||.+..... ...+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 357899999999999999999974 789999999975432 2356789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 90 ~e~~~~~~L~~~l~~ 104 (276)
T 2h6d_A 90 MEYVSGGELFDYICK 104 (276)
T ss_dssp EECCCSCBHHHHHHH
T ss_pred EeccCCCcHHHHHhc
Confidence 999999999999853
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=118.81 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=72.9
Q ss_pred cCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEEcccCCCC
Q 040301 439 CNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMWGRLLNIS 516 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~e~~~~gs 516 (524)
.+.||+|+||.||+|.. .+++.||||.+.... ...+.+|+.+++.+. ||||+++++++.++...|+|||||++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRM---EANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGG---HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChhh---hhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 37899999999999997 468999999997543 356778999999997 9999999999999999999999999999
Q ss_pred HHHHHHh
Q 040301 517 ITIIRRH 523 (524)
Q Consensus 517 L~~~l~~ 523 (524)
|.+++++
T Consensus 93 L~~~l~~ 99 (325)
T 3kn6_A 93 LFERIKK 99 (325)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=119.02 Aligned_cols=91 Identities=25% Similarity=0.319 Sum_probs=79.0
Q ss_pred hccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC--cc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD--FK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~--~~ 505 (524)
.++|+..+.||+|+||.||+|.+ .+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 45688899999999999999984 357889999998766666788999999999999999999999987654 78
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 120 ~lv~e~~~~~~L~~~l~~ 137 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQK 137 (326)
T ss_dssp EEEECCCTTCBHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHh
Confidence 999999999999999864
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=118.89 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=81.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|...+.||+|+||.||++.. .+++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus 39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 118 (335)
T 2owb_A 39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV 118 (335)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence 346799999999999999999997 457889999997542 3456788999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 119 v~e~~~~~~L~~~~~~ 134 (335)
T 2owb_A 119 VLELCRRRSLLELHKR 134 (335)
T ss_dssp EECCCTTCBHHHHHHH
T ss_pred EEecCCCCCHHHHHhc
Confidence 9999999999998753
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-11 Score=126.98 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=80.3
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
..+.|+..+.||+|+||.||+|.. .+++.||||++.... ......+.+|++++++++||||+++++++.+....++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 346799999999999999999997 478999999996432 23457789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
||||++|+|.+++.
T Consensus 100 ~e~~~~~~L~~~~~ 113 (486)
T 3mwu_A 100 GELYTGGELFDEII 113 (486)
T ss_dssp ECCCCSCBHHHHHH
T ss_pred EEcCCCCcHHHHHH
Confidence 99999999998874
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.8e-12 Score=121.37 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=77.9
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|...+.||+|+||.||+|.. .+++.||+|.+..... ...+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 35799999999999999999996 6789999999975431 2245788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||+ +|+|.+++.
T Consensus 88 ~E~~-~g~l~~~l~ 100 (336)
T 3h4j_B 88 IEYA-GGELFDYIV 100 (336)
T ss_dssp ECCC-CEEHHHHHH
T ss_pred EECC-CCcHHHHHH
Confidence 9999 689999875
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-12 Score=121.26 Aligned_cols=91 Identities=15% Similarity=0.260 Sum_probs=78.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc---
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK--- 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~--- 505 (524)
.+.|+..+.||+|+||.||+|+. .+++.||||.+.... ......+.+|++++++++||||+++++++......
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46799999999999999999996 578899999997543 33456789999999999999999999999876544
Q ss_pred -eEEEcccCCCCHHHHHHh
Q 040301 506 -ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 -~lv~e~~~~gsL~~~l~~ 523 (524)
|+||||+++|+|.+++++
T Consensus 91 ~~lv~e~~~g~~L~~~l~~ 109 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHT 109 (311)
T ss_dssp EEEEEECCCEEEHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHh
Confidence 999999999999999863
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=126.70 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=80.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|...+.||+|+||.||+|+. .+|+.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 46788899999999999999997 4689999999975432 2356788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||+||+|.+++++
T Consensus 264 mE~~~gg~L~~~l~~ 278 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYN 278 (543)
T ss_dssp ECCCTTCBHHHHHHT
T ss_pred EEeccCCCHHHHHHH
Confidence 999999999999864
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=120.45 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=74.4
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCC-C---CEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEE
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISD-W---TNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSC 499 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~---~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~ 499 (524)
++++....++|+..+.||+|+||.||+|.... + ..||||.+.... ....+++.+|++++++++||||+++++++
T Consensus 15 ~~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 94 (323)
T 3qup_A 15 LEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVS 94 (323)
T ss_dssp -CTTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEE
T ss_pred hhhcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhcee
Confidence 44555667789999999999999999999643 3 279999997542 34567899999999999999999999999
Q ss_pred EcCCcc------eEEEcccCCCCHHHHHH
Q 040301 500 SNPDFK------ALMWGRLLNISITIIRR 522 (524)
Q Consensus 500 ~~~~~~------~lv~e~~~~gsL~~~l~ 522 (524)
...+.. ++||||+++|+|.++++
T Consensus 95 ~~~~~~~~~~~~~~v~e~~~~~~L~~~l~ 123 (323)
T 3qup_A 95 LRSRAKGRLPIPMVILPFMKHGDLHAFLL 123 (323)
T ss_dssp ECC-------CEEEEEECCTTCBHHHHHH
T ss_pred eccccccCCCccEEEEEeccCCcHHHHHH
Confidence 887665 99999999999999985
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=122.36 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=70.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHH-HhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEV-LRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~-l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.++|+..+.||+|+||.||+|+. .+++.||||++.... ......+.+|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 46799999999999999999997 468899999997643 2234556777776 577899999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 117 v~E~~~gg~L~~~l~~ 132 (373)
T 2r5t_A 117 VLDYINGGELFYHLQR 132 (373)
T ss_dssp EEECCCSCBHHHHHHH
T ss_pred EEeCCCCCcHHHHHHh
Confidence 9999999999999864
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=117.60 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=74.9
Q ss_pred ccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--Ccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFK 505 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~ 505 (524)
+.|+..+.||+|+||.||+|++ .+++.||+|.+.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 4588889999999999999984 467889999997543 23457789999999999999999999999876 668
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++||||+++|+|.++++
T Consensus 101 ~lv~e~~~~~~L~~~l~ 117 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLP 117 (302)
T ss_dssp EEEEECCTTCBHHHHHH
T ss_pred EEEEEeCCCCcHHHHHH
Confidence 99999999999999984
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=118.21 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=78.9
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 5788999999999999999997 468999999986543 3345778899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|.++++
T Consensus 83 ~~~~~~l~~~~~ 94 (311)
T 4agu_A 83 YCDHTVLHELDR 94 (311)
T ss_dssp CCSEEHHHHHHH
T ss_pred eCCCchHHHHHh
Confidence 999999998875
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=116.50 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=79.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---------hHHHHHHHHHHHHHhcCC-CCCccceeEEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---------ERAFRSFDSECEVLRNVC-HRNLIKILSSCS 500 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---------~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~ 500 (524)
-.++|+..+.||+|+||.||+|.. .+++.||||.++... ....+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 346799999999999999999997 468899999996532 123567889999999995 999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.++..++||||+++|+|.+++++
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~ 117 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTE 117 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHH
T ss_pred cCCeEEEEEeccCCCcHHHHHhc
Confidence 99999999999999999999863
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=117.58 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=80.2
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.++++++||||+++++++..++..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 46799999999999999999997 468889999997543 23457889999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 113 ~e~~~~~~L~~~l~~ 127 (309)
T 2h34_A 113 MRLINGVDLAAMLRR 127 (309)
T ss_dssp EECCCCEEHHHHHHH
T ss_pred EEecCCCCHHHHHHh
Confidence 999999999999864
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=9e-12 Score=117.56 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=74.1
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccch----HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE----RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|... ++.+|||.+..... ...+.+.+|+++++.++||||+++++++.+++..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 457889999999999999999974 78899999865432 2356789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||+++|+|.++++
T Consensus 85 ~e~~~~~~L~~~~~ 98 (271)
T 3dtc_A 85 MEFARGGPLNRVLS 98 (271)
T ss_dssp EECCTTEEHHHHHT
T ss_pred EEcCCCCCHHHHhh
Confidence 99999999999875
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=116.58 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=78.8
Q ss_pred hhhhhccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
.....++|+..+.||+|+||.||+|... .+..||+|.+.... ....+.+.+|+.++++++||||+++++++ .++
T Consensus 10 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~ 88 (281)
T 1mp8_A 10 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TEN 88 (281)
T ss_dssp CBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSS
T ss_pred eEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccC
Confidence 3445578999999999999999999963 24569999986533 44567899999999999999999999998 456
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.++++.
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~ 108 (281)
T 1mp8_A 89 PVWIIMELCTLGELRSFLQV 108 (281)
T ss_dssp SCEEEEECCTTEEHHHHHHH
T ss_pred ccEEEEecCCCCCHHHHHHh
Confidence 78999999999999999863
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=117.42 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=76.0
Q ss_pred ccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--CcceE
Q 040301 436 FNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKAL 507 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~l 507 (524)
|+..+.||+|+||.||++.+ .+++.||||++.... ....+.+.+|++++++++||||+++++++.+. ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 48889999999999999875 257889999997543 44567899999999999999999999999874 56899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 113 v~e~~~~~~L~~~l~~ 128 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPR 128 (318)
T ss_dssp EECCCTTCBHHHHGGG
T ss_pred EEecccCCcHHHHHhh
Confidence 9999999999999864
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=118.09 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=77.9
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.||+|+||.||+|...+++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 4688899999999999999998778999999996543 22346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++ +|.++++.
T Consensus 82 ~~~-~l~~~~~~ 92 (288)
T 1ob3_A 82 LDQ-DLKKLLDV 92 (288)
T ss_dssp CSE-EHHHHHHT
T ss_pred cCC-CHHHHHHh
Confidence 985 99988753
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=118.56 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=84.0
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccce
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKI 495 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l 495 (524)
+....+....++|+..+.||+|+||.||+|.. .+++.||||.+.... ....+.+.+|+++++++ +||||+++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34456666778999999999999999999984 346789999997644 34456899999999999 79999999
Q ss_pred eEEEEcCC-cceEEEcccCCCCHHHHHHh
Q 040301 496 LSSCSNPD-FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 496 ~~~~~~~~-~~~lv~e~~~~gsL~~~l~~ 523 (524)
++++...+ ..++||||+++|+|.+++++
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 125 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRS 125 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHT
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHh
Confidence 99988754 58999999999999999864
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=116.39 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=79.5
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|++++++++||||+++++++.+++..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 357899999999999999999974 57789999996543 22356789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 93 ~e~~~~~~L~~~l~~ 107 (284)
T 2vgo_A 93 LEFAPRGELYKELQK 107 (284)
T ss_dssp ECCCTTEEHHHHHHH
T ss_pred EEeCCCCcHHHHHHh
Confidence 999999999998863
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=120.89 Aligned_cols=92 Identities=20% Similarity=0.127 Sum_probs=79.6
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcce
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~ 506 (524)
..++|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|..++..+ +||+|+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 3467999999999999999999974 57889999997643 23356788999999988 8999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 98 lv~E~~~gg~L~~~l~~ 114 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQ 114 (353)
T ss_dssp EEEECCCSCBHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHh
Confidence 99999999999999864
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=117.98 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=74.9
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.++|+..+.||+|+||.||+|... ++.||||.+.... ..+.|.+|++++++++||||+++++++. +..++||||+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~ 81 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESES--ERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYA 81 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSSTT--HHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECC
T ss_pred HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecChh--HHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcC
Confidence 356888899999999999999974 6789999996532 4578999999999999999999999886 4589999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 82 ~~~~L~~~l~~ 92 (307)
T 2eva_A 82 EGGSLYNVLHG 92 (307)
T ss_dssp TTCBHHHHHHC
T ss_pred CCCCHHHHHhc
Confidence 99999999864
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.5e-12 Score=126.42 Aligned_cols=92 Identities=22% Similarity=0.196 Sum_probs=72.2
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..+.||+|+||.||+|.. .+++.||||.+.... ......+.+|+++++.++||||+++++++.+.+..++
T Consensus 146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l 225 (446)
T 4ejn_A 146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF 225 (446)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence 346799999999999999999996 578999999997542 2345678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++++
T Consensus 226 v~e~~~~~~L~~~l~~ 241 (446)
T 4ejn_A 226 VMEYANGGELFFHLSR 241 (446)
T ss_dssp EECCCSSCBHHHHHHH
T ss_pred EEeeCCCCcHHHHHHh
Confidence 9999999999998853
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=116.46 Aligned_cols=91 Identities=25% Similarity=0.258 Sum_probs=80.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.+.|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 35688899999999999999996 568899999997543 3346789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 101 ~~~~~~L~~~~~~ 113 (303)
T 3a7i_A 101 YLGGGSALDLLEP 113 (303)
T ss_dssp CCTTEEHHHHHTT
T ss_pred eCCCCcHHHHHhc
Confidence 9999999998853
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.7e-12 Score=119.69 Aligned_cols=94 Identities=21% Similarity=0.238 Sum_probs=66.2
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
....++|+..+.||+|+||.||+|.. .+++.||||.+.... ....+++.+|+.++++++||||+++++++..++..++
T Consensus 11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 90 (303)
T 2vwi_A 11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL 90 (303)
T ss_dssp --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence 34457899999999999999999996 468899999986543 3345678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 91 v~e~~~~~~L~~~l~~ 106 (303)
T 2vwi_A 91 VMKLLSGGSVLDIIKH 106 (303)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EehhccCCchHHHHHH
Confidence 9999999999999863
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=120.42 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=84.9
Q ss_pred ccccchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEE
Q 040301 421 WRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSS 498 (524)
Q Consensus 421 ~~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~ 498 (524)
...+++.++....+.|+..+.||+|+||.||+|.. .+++.||||.+..... ..+.+.+|+.+++++ +||||++++++
T Consensus 11 ~~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~ 89 (326)
T 2x7f_A 11 LDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGA 89 (326)
T ss_dssp -----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEE
T ss_pred chhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeE
Confidence 34566777778889999999999999999999997 5789999999975432 346788999999998 89999999999
Q ss_pred EEc------CCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSN------PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~------~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.. .+..++||||+++|+|.+++++
T Consensus 90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 120 (326)
T 2x7f_A 90 FIKKNPPGMDDQLWLVMEFCGAGSVTDLIKN 120 (326)
T ss_dssp EEECC--CCCCEEEEEEECCTTEEHHHHHHH
T ss_pred EeeccCccccceEEEEEEcCCCCcHHHHHHh
Confidence 987 4678999999999999999864
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-11 Score=117.32 Aligned_cols=103 Identities=19% Similarity=0.197 Sum_probs=61.9
Q ss_pred EEEccCC-cccccCCcccccccCCCEEEccc-cccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcc
Q 040301 24 VMDLSSN-SFSGHIPNTFGNLRHLSSLLLTW-NNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101 (524)
Q Consensus 24 ~Ldls~n-~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 101 (524)
.++++++ +++ .+|. |..+++|++|+|++ |.++.++. ..|.++++|++|+|++|.+.+..|..|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~--------~~~~~l~~L~~L~l~~N~l~~~~~~~~----- 76 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLEL--------RDLRGLGELRNLTIVKSGLRFVAPDAF----- 76 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECG--------GGSCSCCCCSEEECCSSCCCEECTTGG-----
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcCh--------hHhccccCCCEEECCCCccceeCHHHh-----
Confidence 4577776 676 4666 77777777777775 77766543 556667777777777776665555444
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
.++++|+.|+|++|++++..+..|..++ |+.|+|.+|.+.
T Consensus 77 --------------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 --------------------HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp --------------------GSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred --------------------cCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4455555555555555544444444333 555555555554
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-11 Score=114.55 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=77.0
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCcce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~~ 506 (524)
..|...+.||+|+||.||+|.. .++..||+|.+.... ....+.+.+|+.++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 3477778999999999999997 467889999997543 4456789999999999999999999999875 35689
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 106 lv~e~~~~~~L~~~l~~ 122 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKR 122 (290)
T ss_dssp EEEECCCSCBHHHHHHH
T ss_pred EEEEecCCCCHHHHHHH
Confidence 99999999999999864
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=116.74 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=79.7
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 467899999999999999999974 68899999997543 3446788999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|.++++
T Consensus 86 ~~~~~~L~~~l~ 97 (276)
T 2yex_A 86 YCSGGELFDRIE 97 (276)
T ss_dssp CCTTEEGGGGSB
T ss_pred ecCCCcHHHHHh
Confidence 999999988764
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=125.30 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=81.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..+.|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus 24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 103 (484)
T 3nyv_A 24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 103 (484)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 345799999999999999999997 478999999996532 2346789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++.+
T Consensus 104 v~e~~~~~~L~~~~~~ 119 (484)
T 3nyv_A 104 VGEVYTGGELFDEIIS 119 (484)
T ss_dssp EECCCCSCBHHHHHHT
T ss_pred EEecCCCCCHHHHHHh
Confidence 9999999999998853
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=121.09 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=76.1
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 509 (524)
..++|+..+.||+|+||.||+|.. .+++.||||.++.... .+.+|++++.++ +||||+++++++.+++..|+||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 356799999999999999999997 4688999999976432 234688888887 7999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.+++.+
T Consensus 96 E~~~gg~L~~~i~~ 109 (342)
T 2qr7_A 96 ELMKGGELLDKILR 109 (342)
T ss_dssp CCCCSCBHHHHHHT
T ss_pred eCCCCCcHHHHHHH
Confidence 99999999998854
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-11 Score=116.19 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=78.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc----------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN---------- 501 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~---------- 501 (524)
.++|+..+.||+|+||.||+|+. .+++.||||.+... ....+.+.+|++++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 46799999999999999999996 47899999999653 3345788999999999999999999999865
Q ss_pred ---CCcceEEEcccCCCCHHHHHHh
Q 040301 502 ---PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ---~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
....++||||+++|+|.+++++
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~ 108 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHS 108 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHH
T ss_pred cccCCceEEEEecCCCCCHHHhhhc
Confidence 3567999999999999999863
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-11 Score=115.68 Aligned_cols=89 Identities=18% Similarity=0.299 Sum_probs=75.8
Q ss_pred hccccccC-cccCCCCceEEEEEeC---CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECN-LLGTGSFGSVYKGTIS---DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~-~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.++|.... .||+|+||.||+|.+. ++..||||.+.... ....+.+.+|++++++++||||+++++++ ..+..++
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 45566666 8999999999999853 56789999997643 44567899999999999999999999999 4567999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||+++|+|.++++
T Consensus 87 v~e~~~~~~L~~~l~ 101 (287)
T 1u59_A 87 VMEMAGGGPLHKFLV 101 (287)
T ss_dssp EEECCTTEEHHHHHT
T ss_pred EEEeCCCCCHHHHHH
Confidence 999999999999985
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=118.19 Aligned_cols=91 Identities=23% Similarity=0.336 Sum_probs=77.9
Q ss_pred hccccccCcccCCCCceEEEEEeCC-----CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISD-----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
...|+..+.||+|+||.||+|.... +..||||.+.... ......+.+|++++++++||||+++++++.+.+..+
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 122 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 122 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence 3467778899999999999998632 2459999997543 345667999999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 123 lv~e~~~~~~L~~~l~~ 139 (333)
T 1mqb_A 123 IITEYMENGALDKFLRE 139 (333)
T ss_dssp EEEECCTTEEHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHh
Confidence 99999999999999864
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=115.21 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=75.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 4688999999999999999997 468899999997543 3345778899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++ ++.+++.
T Consensus 82 ~~~~-~l~~~~~ 92 (292)
T 3o0g_A 82 FCDQ-DLKKYFD 92 (292)
T ss_dssp CCSE-EHHHHHH
T ss_pred cCCC-CHHHHHH
Confidence 9985 6665553
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-11 Score=116.02 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=77.5
Q ss_pred hhhhhhhccccccC-cccCCCCceEEEEEe---CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEE
Q 040301 427 LDIQRATDEFNECN-LLGTGSFGSVYKGTI---SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCS 500 (524)
Q Consensus 427 ~~l~~~~~~~~~~~-~ig~g~~g~v~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~ 500 (524)
+++......|...+ .||+|+||.||+|.+ .+++.||||.+.... ....+++.+|+++++.++||||+++++++
T Consensus 9 ~~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~- 87 (291)
T 1xbb_A 9 KEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC- 87 (291)
T ss_dssp --CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-
T ss_pred ceeeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-
Confidence 34444556788877 999999999999964 346789999997543 33467899999999999999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
..+..++||||+++|+|.+++++
T Consensus 88 ~~~~~~lv~e~~~~~~L~~~l~~ 110 (291)
T 1xbb_A 88 EAESWMLVMEMAELGPLNKYLQQ 110 (291)
T ss_dssp ESSSEEEEEECCTTEEHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHh
Confidence 56778999999999999999864
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.4e-11 Score=114.65 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=80.5
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
..++|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 99 (287)
T 2wei_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (287)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence 3467999999999999999999974 68899999996543 23467889999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||+++|+|.+++.
T Consensus 100 ~e~~~~~~L~~~l~ 113 (287)
T 2wei_A 100 GELYTGGELFDEII 113 (287)
T ss_dssp ECCCCSCBHHHHHH
T ss_pred EEccCCCCHHHHHH
Confidence 99999999998874
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-11 Score=116.45 Aligned_cols=89 Identities=24% Similarity=0.217 Sum_probs=39.4
Q ss_pred ccCCCCCCeEEccc-CcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 040301 121 IGNLRGLTLLSLFN-NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199 (524)
Q Consensus 121 ~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 199 (524)
+..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++.+..+..|..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44444444444443 444444444444444444444444444444444444444444444444444433333333332 4
Q ss_pred CEEEccCCcCC
Q 040301 200 RELHLGSNKLT 210 (524)
Q Consensus 200 ~~L~l~~n~l~ 210 (524)
+.|++.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 44555444443
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-11 Score=117.60 Aligned_cols=90 Identities=27% Similarity=0.398 Sum_probs=75.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCE--EEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTN--VAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~--vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv 508 (524)
++|+..+.||+|+||.||+|+. .++.. +|+|.+.... ....+.+.+|+++++++ +||||+++++++.+++..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 5788889999999999999996 35554 4999987533 33456789999999999 999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 105 ~e~~~~~~L~~~l~~ 119 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRK 119 (327)
T ss_dssp ECCCTTCBHHHHHHT
T ss_pred EecCCCCCHHHHHHh
Confidence 999999999999864
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.8e-11 Score=117.79 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=81.0
Q ss_pred hhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--------hHHHHHHHHHHHHHhcC-CCCCccceeEE
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--------ERAFRSFDSECEVLRNV-CHRNLIKILSS 498 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~Ei~~l~~l-~H~niv~l~~~ 498 (524)
.....++|+..+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.+++++ +||||++++++
T Consensus 89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 168 (365)
T 2y7j_A 89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS 168 (365)
T ss_dssp HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 3444567999999999999999999974 78999999996532 12245788999999999 89999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHH
Q 040301 499 CSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
+......++||||+++|+|.++++
T Consensus 169 ~~~~~~~~lv~e~~~g~~L~~~l~ 192 (365)
T 2y7j_A 169 YESSSFMFLVFDLMRKGELFDYLT 192 (365)
T ss_dssp EEBSSEEEEEECCCTTCBHHHHHH
T ss_pred EeeCCEEEEEEEeCCCCcHHHHHH
Confidence 999999999999999999999985
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-11 Score=118.06 Aligned_cols=89 Identities=22% Similarity=0.237 Sum_probs=77.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
...|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+++..++|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 34588889999999999999996 578899999997532 33456789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||++ |++.+++.
T Consensus 133 ~e~~~-g~l~~~l~ 145 (348)
T 1u5q_A 133 MEYCL-GSASDLLE 145 (348)
T ss_dssp EECCS-EEHHHHHH
T ss_pred EecCC-CCHHHHHH
Confidence 99998 68888774
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-11 Score=118.58 Aligned_cols=89 Identities=17% Similarity=0.267 Sum_probs=71.8
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--------------------------HHHHHHHHHHHHHh
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--------------------------RAFRSFDSECEVLR 485 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--------------------------~~~~~~~~Ei~~l~ 485 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.+..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 35799999999999999999996 5688999999965321 11356889999999
Q ss_pred cCCCCCccceeEEEEc--CCcceEEEcccCCCCHHHHH
Q 040301 486 NVCHRNLIKILSSCSN--PDFKALMWGRLLNISITIIR 521 (524)
Q Consensus 486 ~l~H~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l 521 (524)
+++||||+++++++.+ .+..++||||+++|+|.+++
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~ 129 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP 129 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh
Confidence 9999999999999987 56789999999999887643
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-11 Score=118.38 Aligned_cols=92 Identities=24% Similarity=0.307 Sum_probs=76.6
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
...++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+++..++
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 3456799999999999999999996 578899999996543 2235678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||++ |+|.+++++
T Consensus 111 v~e~~~-~~L~~~~~~ 125 (329)
T 3gbz_A 111 IFEYAE-NDLKKYMDK 125 (329)
T ss_dssp EEECCS-EEHHHHHHH
T ss_pred EEecCC-CCHHHHHhh
Confidence 999998 599998864
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-11 Score=118.61 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=87.9
Q ss_pred cccccchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-----CCCcc
Q 040301 420 TWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-----HRNLI 493 (524)
Q Consensus 420 ~~~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-----H~niv 493 (524)
....+++++.....++|...+.||+|+||.||+|+. .+++.||||.+.... ...+.+.+|+++++.+. ||||+
T Consensus 21 ~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv 99 (360)
T 3llt_A 21 EIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIV 99 (360)
T ss_dssp GGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBC
T ss_pred cceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCee
Confidence 345667777777888999999999999999999997 578899999997533 34566788999999886 99999
Q ss_pred ceeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 494 KILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 494 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++++++...+..++||||+ +|+|.+++++
T Consensus 100 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~ 128 (360)
T 3llt_A 100 KYHGKFMYYDHMCLIFEPL-GPSLYEIITR 128 (360)
T ss_dssp CEEEEEEETTEEEEEECCC-CCBHHHHHHH
T ss_pred cccceeeECCeeEEEEcCC-CCCHHHHHHh
Confidence 9999999999999999999 8999999864
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-11 Score=114.40 Aligned_cols=88 Identities=26% Similarity=0.348 Sum_probs=74.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HH----HHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RA----FRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~----~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
.++|+..+.||+|+||.||+|+. .+++.||+|.+..... .. .+.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 46788999999999999999997 5788999999964331 11 167899999999999999999999986554
Q ss_pred ceEEEcccCCCCHHHHHH
Q 040301 505 KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~ 522 (524)
++||||+++|+|.+++.
T Consensus 97 -~lv~e~~~~~~L~~~l~ 113 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLL 113 (287)
T ss_dssp -EEEEECCTTCBHHHHHH
T ss_pred -eEEEEecCCCCHHHHHh
Confidence 79999999999998874
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-11 Score=114.90 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=77.1
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-CcceEE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-DFKALM 508 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-~~~~lv 508 (524)
....++|+..+.||+|+||.||+|.. +++.||||.++... ..+.+.+|++++++++||||+++++++.+. +..++|
T Consensus 17 ~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv 93 (278)
T 1byg_A 17 ALNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 93 (278)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred cCChhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEE
Confidence 34457899999999999999999987 47899999997543 456789999999999999999999997654 478999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 94 ~e~~~~~~L~~~l~~ 108 (278)
T 1byg_A 94 TEYMAKGSLVDYLRS 108 (278)
T ss_dssp ECCCTTEEHHHHHHH
T ss_pred EecCCCCCHHHHHHh
Confidence 999999999999864
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-11 Score=116.44 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=78.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 45789999999999999999997 458999999986543 334567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+++++|.+++.
T Consensus 104 e~~~~~~l~~~~~ 116 (331)
T 4aaa_A 104 EFVDHTILDDLEL 116 (331)
T ss_dssp ECCSEEHHHHHHH
T ss_pred ecCCcchHHHHHh
Confidence 9999999888754
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.5e-11 Score=115.37 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=73.9
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.||+|+||.||+|... +|+.||+|.+.... ..+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 4467999999999999999999974 58999999997543 34678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|.++++
T Consensus 105 ~~~~~~L~~~~~ 116 (314)
T 3com_A 105 YCGAGSVSDIIR 116 (314)
T ss_dssp CCTTEEHHHHHH
T ss_pred cCCCCCHHHHHH
Confidence 999999999985
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.9e-12 Score=122.24 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=77.6
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHH-----------------HHHHHHHHHHHhcCCCCCccce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERA-----------------FRSFDSECEVLRNVCHRNLIKI 495 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~Ei~~l~~l~H~niv~l 495 (524)
.++|+..+.||+|+||.||+|.. +++.||||.+....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999999 88999999997543211 1789999999999999999999
Q ss_pred eEEEEcCCcceEEEcccCCCCHHHH
Q 040301 496 LSSCSNPDFKALMWGRLLNISITII 520 (524)
Q Consensus 496 ~~~~~~~~~~~lv~e~~~~gsL~~~ 520 (524)
++++.+.+..++||||+++|+|.++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~ 133 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKF 133 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHH
Confidence 9999999999999999999999877
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-11 Score=115.91 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=74.0
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||+||+|... +++.||||++.... .....++.+|+..+.++ +||||++++++|.+++..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57999999999999999999974 78999999986432 33445566677666655 9999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+ +|+|.+++.+
T Consensus 137 e~~-~~~L~~~~~~ 149 (311)
T 3p1a_A 137 ELC-GPSLQQHCEA 149 (311)
T ss_dssp ECC-CCBHHHHHHH
T ss_pred ecc-CCCHHHHHHh
Confidence 999 6799988753
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.9e-11 Score=114.74 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=73.0
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEE-----------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCS----------- 500 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~----------- 500 (524)
.++|+..+.||+|+||.||+|... +++.||+|++........+++.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 357889999999999999999974 58899999998766666788999999999999999999999874
Q ss_pred ---cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 ---NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ---~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+....++||||++ |+|.+++++
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~ 114 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQ 114 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTT
T ss_pred cccccCceeEEeeccC-CCHHHHhhc
Confidence 3467899999998 699998853
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-11 Score=126.83 Aligned_cols=88 Identities=18% Similarity=0.299 Sum_probs=73.7
Q ss_pred ccccccC-cccCCCCceEEEEEeC---CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECN-LLGTGSFGSVYKGTIS---DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~-~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
+++.... .||+|+||.||+|.+. ++..||||.++... ....++|.+|+++|++++|||||+++++|.. +..++|
T Consensus 335 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv 413 (613)
T 2ozo_A 335 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV 413 (613)
T ss_dssp TSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEE
T ss_pred cceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEE
Confidence 3444444 7999999999999863 45679999997643 3456789999999999999999999999976 569999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
||||++|+|.++++
T Consensus 414 ~E~~~~g~L~~~l~ 427 (613)
T 2ozo_A 414 MEMAGGGPLHKFLV 427 (613)
T ss_dssp EECCTTCBHHHHHT
T ss_pred EEeCCCCcHHHHHh
Confidence 99999999999985
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.4e-11 Score=113.51 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=72.9
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhc--CCCCCccceeEEEEcC----Ccc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRN--VCHRNLIKILSSCSNP----DFK 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~--l~H~niv~l~~~~~~~----~~~ 505 (524)
..++|+..+.||+|+||.||+|.. +++.||||++.... .+.+.+|.+++.. ++||||+++++++... ...
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~ 81 (301)
T 3q4u_A 6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD---EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL 81 (301)
T ss_dssp CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc---chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence 346899999999999999999998 67899999997543 3455667777665 7999999999997653 458
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 82 ~lv~e~~~~g~L~~~l~~ 99 (301)
T 3q4u_A 82 WLITHYHEMGSLYDYLQL 99 (301)
T ss_dssp EEEECCCTTCBHHHHHTT
T ss_pred EEehhhccCCCHHHHHhh
Confidence 999999999999999864
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.2e-11 Score=116.55 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=79.7
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCC--CCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCH--RNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H--~niv~l~~~~~~~~~~~l 507 (524)
..+.|+..+.||+|+||.||++...+++.||||++.... ....+.+.+|++++++++| |||+++++++.+++..++
T Consensus 7 ~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 86 (343)
T 3dbq_A 7 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 86 (343)
T ss_dssp SSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred ecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence 346799999999999999999998888999999997543 3456789999999999987 999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||| +.+|+|.+++++
T Consensus 87 v~e-~~~~~L~~~l~~ 101 (343)
T 3dbq_A 87 VME-CGNIDLNSWLKK 101 (343)
T ss_dssp EEC-CCSEEHHHHHHH
T ss_pred EEe-CCCCCHHHHHHh
Confidence 999 567899999864
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-11 Score=114.87 Aligned_cols=98 Identities=22% Similarity=0.348 Sum_probs=77.6
Q ss_pred chhhhhhhhccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEE
Q 040301 425 SYLDIQRATDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSS 498 (524)
Q Consensus 425 ~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~ 498 (524)
.++++....++|...+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.++++++||||++++++
T Consensus 25 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 104 (313)
T 3brb_A 25 KLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGV 104 (313)
T ss_dssp CTTTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEE
T ss_pred hHHhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEE
Confidence 34556667788999999999999999999852 34579999997542 3456789999999999999999999999
Q ss_pred EEcCCc-----ceEEEcccCCCCHHHHHH
Q 040301 499 CSNPDF-----KALMWGRLLNISITIIRR 522 (524)
Q Consensus 499 ~~~~~~-----~~lv~e~~~~gsL~~~l~ 522 (524)
+.+.+. .++||||+++|+|.+++.
T Consensus 105 ~~~~~~~~~~~~~~v~e~~~~~~L~~~l~ 133 (313)
T 3brb_A 105 CIEMSSQGIPKPMVILPFMKYGDLHTYLL 133 (313)
T ss_dssp EEC-------CEEEEEECCTTCBHHHHHH
T ss_pred EeeccccCCcccEEEEecccCCCHHHHHH
Confidence 987653 499999999999999983
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-11 Score=113.61 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=75.1
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc----------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN---------- 501 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~---------- 501 (524)
..+|+..+.||+|+||.||+|... +++.||+|.+.... +.+.+|++++++++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 357899999999999999999974 78999999997643 346689999999999999999999864
Q ss_pred ------CCcceEEEcccCCCCHHHHHHh
Q 040301 502 ------PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ------~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
....++||||+++|+|.+++++
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 113 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEK 113 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHH
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhh
Confidence 3458999999999999999853
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-11 Score=122.86 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=74.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--------HHHHHHHHHHHHHhcCCCCCccceeEEEEcC
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--------RAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 502 (524)
..++|...+.||+|+||.||+|.. .+++.||||.+..... .....+.+|++++++++||||+++++++..
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~- 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA- 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence 456799999999999999999996 5688999999975321 122358899999999999999999999864
Q ss_pred CcceEEEcccCCCCHHHHHH
Q 040301 503 DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~ 522 (524)
+..++|||||++|+|.+++.
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~ 231 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVV 231 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTS
T ss_pred CceEEEEEcCCCCcHHHHHh
Confidence 55899999999999988764
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-11 Score=119.40 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=78.3
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEE------eCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC---CCCccceeE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGT------ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC---HRNLIKILS 497 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~------~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~---H~niv~l~~ 497 (524)
.++....+.|...+.||+|+||.||+|. ..+++.||||++.... ..++.+|++++.+++ |+||+++++
T Consensus 58 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~ 134 (365)
T 3e7e_A 58 TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYS 134 (365)
T ss_dssp CEEECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEE
T ss_pred eeEEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhhe
Confidence 3445566789999999999999999994 3567889999997654 346777888877776 999999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHH
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
++..++..++|||||++|+|.++++
T Consensus 135 ~~~~~~~~~lv~e~~~~g~L~~~l~ 159 (365)
T 3e7e_A 135 AHLFQNGSVLVGELYSYGTLLNAIN 159 (365)
T ss_dssp EEECSSCEEEEECCCCSCBHHHHHH
T ss_pred eeecCCCcEEEEeccCCCcHHHHHH
Confidence 9999999999999999999999996
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-11 Score=118.37 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=82.5
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc-----------hHHHHHHHHHHHHHhcCCCCCc
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL-----------ERAFRSFDSECEVLRNVCHRNL 492 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~-----------~~~~~~~~~Ei~~l~~l~H~ni 492 (524)
...+++....++|+..+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++||||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 34577788889999999999999999999998779999999995422 1224789999999999999999
Q ss_pred cceeEEEEcC-----CcceEEEcccCCCCHHHHHH
Q 040301 493 IKILSSCSNP-----DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 493 v~l~~~~~~~-----~~~~lv~e~~~~gsL~~~l~ 522 (524)
+++++++... ...++||||++ |+|.+++.
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~ 125 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIH 125 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHH
T ss_pred cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHH
Confidence 9999998543 35799999998 68888875
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-11 Score=116.36 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=73.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--------hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--------ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
.++|...+.||+|+||.||+|.. .+++.||||.+.... ......+.+|++++++++||||+++++++..++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 45799999999999999999997 467889999996532 112345889999999999999999999997655
Q ss_pred cceEEEcccCCCCHHHHHH
Q 040301 504 FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~ 522 (524)
.++||||+++|+|.+++.
T Consensus 89 -~~lv~e~~~~~~L~~~~~ 106 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVV 106 (322)
T ss_dssp -EEEEEECCTTEETHHHHS
T ss_pred -eEEEEecCCCCcHHHHHh
Confidence 899999999999999875
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.13 E-value=6.8e-11 Score=113.17 Aligned_cols=91 Identities=21% Similarity=0.330 Sum_probs=75.6
Q ss_pred hccccccCcccCCCCceEEEEEeCC----CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEE-cCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISD----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCS-NPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~-~~~~~~ 506 (524)
...|+..+.||+|+||.||+|...+ +..+|+|.+.... ....+.+.+|+.++++++||||+++++++. .++..+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3568888999999999999999632 2358999987543 445678999999999999999999999865 456789
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 104 ~v~e~~~~~~L~~~l~~ 120 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRN 120 (298)
T ss_dssp EEEECCTTCBHHHHHHC
T ss_pred EEEeCCCCCCHHHHHHh
Confidence 99999999999999864
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-11 Score=117.92 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=78.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--------HHHHHHHHHHHHHhcCCCCCccceeEEEEcC
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--------RAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 502 (524)
..++|+..+.||+|+||.||+|.. .+++.||||.+..... ...+.+.+|++++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 346799999999999999999996 5688899999975431 1234577899999999999999999999999
Q ss_pred CcceEEEcccCCC-CHHHHHHh
Q 040301 503 DFKALMWGRLLNI-SITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~g-sL~~~l~~ 523 (524)
+..++||||+.+| +|.+++++
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~ 123 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDR 123 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHT
T ss_pred CEEEEEEEeCCCCccHHHHHHh
Confidence 9999999999877 99998864
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.8e-11 Score=118.00 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=74.8
Q ss_pred ccccccCcccCCCCceEEEEEe--CCC--CEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEc-CCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI--SDW--TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSN-PDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~--~~~--~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~~~~~l 507 (524)
..|...+.||+|+||.||+|.. .++ ..+|||.+.... ....++|.+|+.++++++||||++++++|.. ++..++
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 3466778999999999999996 232 358999986533 4556789999999999999999999998765 457899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 169 v~e~~~~g~L~~~l~~ 184 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRN 184 (373)
T ss_dssp EEECCTTCBHHHHHHC
T ss_pred EEECCCCCCHHHHHhh
Confidence 9999999999999864
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-11 Score=119.31 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=78.3
Q ss_pred hccccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCC
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPD 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~ 503 (524)
.++|+..+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++.+ +||||+++++++..++
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 36799999999999999999996 368899999986432 22345677899999999 6999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~ 152 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQ 152 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHH
T ss_pred eEEEEeecCCCCCHHHHHHH
Confidence 99999999999999999863
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.9e-11 Score=111.04 Aligned_cols=92 Identities=21% Similarity=0.289 Sum_probs=77.2
Q ss_pred hhhccccccCcccCCCCceEEEEEeCC----CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISD----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...++|...+.||+|+||.||+|.... +..||+|.+.... ....+.+.+|++++++++||||+++++++.+ +..
T Consensus 9 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~ 87 (281)
T 3cc6_A 9 IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPT 87 (281)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSC
T ss_pred ecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCC
Confidence 345789999999999999999998522 3459999997643 4456789999999999999999999999864 567
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 88 ~~v~e~~~~~~L~~~l~~ 105 (281)
T 3cc6_A 88 WIIMELYPYGELGHYLER 105 (281)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHh
Confidence 999999999999999853
|
| >2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=7.1e-11 Score=113.10 Aligned_cols=89 Identities=22% Similarity=0.332 Sum_probs=75.1
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+..+.||+|+||.||+|+.. +++.||||.+.... ....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57888999999999999999974 68999999986543 2234678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|++ |+|.++++.
T Consensus 83 ~~~-~~L~~~~~~ 94 (299)
T 2r3i_A 83 FLH-QDLKKFMDA 94 (299)
T ss_dssp CCS-EEHHHHHHH
T ss_pred ccc-CCHHHHHHh
Confidence 998 699998853
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=111.74 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=74.7
Q ss_pred cccccCcccCCCCceEEEEEe-CCC---CEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc-eEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDW---TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK-ALM 508 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~---~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~-~lv 508 (524)
.|...+.||+|+||.||+|.. .++ ..+|+|.+.... ....+.+.+|+.++++++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 355668999999999999985 222 369999997543 44567899999999999999999999999876665 999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+.+|+|.+++++
T Consensus 102 ~e~~~~~~L~~~~~~ 116 (298)
T 3pls_A 102 LPYMCHGDLLQFIRS 116 (298)
T ss_dssp ECCCTTCBHHHHHHC
T ss_pred EecccCCCHHHHHhc
Confidence 999999999999864
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=113.08 Aligned_cols=88 Identities=18% Similarity=0.337 Sum_probs=77.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEc--CCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSN--PDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~--~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.+.... .+.+.+|++++++++ ||||+++++++.. ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 36799999999999999999996 578899999997543 366889999999997 9999999999988 5678999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 112 ~e~~~~~~l~~~~~~ 126 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQT 126 (330)
T ss_dssp EECCCCCCHHHHGGG
T ss_pred EeccCchhHHHHHHh
Confidence 999999999998764
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=116.34 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=78.8
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCC--CCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVC--HRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~~~~~~~lv 508 (524)
.+.|+..+.||+|+||.||+|...+++.||||.+.... ....+.+.+|+.++++++ ||||+++++++..++..|+|
T Consensus 55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 134 (390)
T 2zmd_A 55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 134 (390)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence 35699999999999999999998778999999996533 445678999999999996 59999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|| +.+|+|.+++++
T Consensus 135 ~E-~~~~~L~~~l~~ 148 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKK 148 (390)
T ss_dssp EE-CCSEEHHHHHHH
T ss_pred Ee-cCCCCHHHHHHh
Confidence 99 567899999864
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=113.46 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=77.3
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhc--CCCCCccceeEEEEcCC----c
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRN--VCHRNLIKILSSCSNPD----F 504 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~--l~H~niv~l~~~~~~~~----~ 504 (524)
...++|+..+.||+|+||.||+|.. +++.||||.+.... .+.+.+|++++.. ++||||+++++++...+ .
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~ 114 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 114 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCC
T ss_pred cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchh---HHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccce
Confidence 3456899999999999999999998 57899999996543 3567789998887 79999999999998876 7
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++++
T Consensus 115 ~~lv~e~~~~g~L~~~l~~ 133 (342)
T 1b6c_B 115 LWLVSDYHEHGSLFDYLNR 133 (342)
T ss_dssp EEEEECCCTTCBHHHHHHH
T ss_pred eEEEEeecCCCcHHHHHhc
Confidence 8999999999999999864
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-11 Score=115.31 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=76.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.+..... .+.+.+|+++++++ +||||+++++++..++..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 36799999999999999999996 5788999999865432 24578999999999 99999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+ +|+|.++++.
T Consensus 86 ~~-~~~L~~~~~~ 97 (330)
T 2izr_A 86 LL-GPSLEDLFDL 97 (330)
T ss_dssp CC-CCBHHHHHHH
T ss_pred eC-CCCHHHHHHH
Confidence 99 8999999864
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=8.6e-11 Score=116.03 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=71.6
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----- 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 503 (524)
..+.|+..+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++...+
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 346799999999999999999997 578999999995432 344677899999999999999999999998763
Q ss_pred -cceEEEcccCCCCHHHHHHh
Q 040301 504 -FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 -~~~lv~e~~~~gsL~~~l~~ 523 (524)
..|+||||+ +++|.+++++
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~ 122 (367)
T 1cm8_A 103 TDFYLVMPFM-GTDLGKLMKH 122 (367)
T ss_dssp CCCEEEEECC-SEEHHHHHHH
T ss_pred ceEEEEEecC-CCCHHHHHhc
Confidence 459999999 7899998864
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=111.21 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=73.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcCCCCCccceeEEEE--cCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNVCHRNLIKILSSCS--NPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~--~~~~~ 505 (524)
.++|...+.||+|+||.||+|.. .+++.+|+|.+.... ....+.+.+|++++++++||||+++++++. +....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 36799999999999999999996 468899999997543 234578999999999999999999999985 34578
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++||||+++| +.+++.
T Consensus 84 ~lv~e~~~~~-l~~~~~ 99 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLD 99 (305)
T ss_dssp EEEEECCSEE-HHHHHH
T ss_pred EEEehhccCC-HHHHHH
Confidence 9999999976 777664
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-11 Score=117.82 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=74.3
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|...+.||+|+||.||+|... +++.||+|++..... .....+.+|++++++++||||+++++++.+++..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 46889999999999999999974 788999999965432 1222456899999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
++ |+|.+++.+
T Consensus 82 ~~-~~l~~~~~~ 92 (324)
T 3mtl_A 82 LD-KDLKQYLDD 92 (324)
T ss_dssp CS-EEHHHHHHH
T ss_pred cc-cCHHHHHHh
Confidence 98 599988754
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.11 E-value=8.6e-11 Score=114.17 Aligned_cols=90 Identities=26% Similarity=0.359 Sum_probs=70.8
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCE----EEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTN----VAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
.++|+..+.||+|+||.||+|+. .+++. ||+|.+.... ....++|.+|+.++++++||||++++++|.++. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 35688999999999999999996 34443 5888875433 344678999999999999999999999998754 78
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|+||+++|+|.+++++
T Consensus 93 ~v~e~~~~g~L~~~l~~ 109 (327)
T 3poz_A 93 LITQLMPFGCLLDYVRE 109 (327)
T ss_dssp EEEECCTTCBHHHHHHH
T ss_pred EEEEecCCCcHHHHHHh
Confidence 99999999999999864
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=112.07 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=74.5
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC--CCCCccceeEEEEcC----C
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV--CHRNLIKILSSCSNP----D 503 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l--~H~niv~l~~~~~~~----~ 503 (524)
....++|+..+.||+|+||.||+|+.. ++.||||++.... ...+.+|.+++... +||||+++++++... .
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 108 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT 108 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence 344578999999999999999999975 7899999996543 23445566666554 999999999999887 6
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 109 ~~~lv~e~~~~g~L~~~l~~ 128 (337)
T 3mdy_A 109 QLYLITDYHENGSLYDYLKS 128 (337)
T ss_dssp EEEEEECCCTTCBHHHHHHH
T ss_pred ceEEEEeccCCCcHHHHhhc
Confidence 78999999999999999864
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=110.90 Aligned_cols=90 Identities=24% Similarity=0.379 Sum_probs=76.3
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+...++|+..+.||+|+||.||+|... ..+|+|.+.... ....+.|.+|++++++++||||+++++++ ..+..++
T Consensus 20 ei~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~l 96 (289)
T 3og7_A 20 EIPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAI 96 (289)
T ss_dssp BCCTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEE
T ss_pred ccCccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEE
Confidence 344567999999999999999999863 359999996433 45567899999999999999999999965 5667899
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||+++|+|.++++
T Consensus 97 v~e~~~~~~L~~~l~ 111 (289)
T 3og7_A 97 VTQWCEGSSLYHHLH 111 (289)
T ss_dssp EEECCCEEEHHHHHT
T ss_pred EEEecCCCcHHHHHh
Confidence 999999999999885
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=110.07 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=73.8
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
...++|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.++...++.++||||+++++++.+++..++
T Consensus 4 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~l 83 (290)
T 3fme_A 4 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 83 (290)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEE
T ss_pred ccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEE
Confidence 3457899999999999999999996 578899999997543 2223344455556888999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||++ |+|.+++++
T Consensus 84 v~e~~~-~~l~~~l~~ 98 (290)
T 3fme_A 84 CMELMD-TSLDKFYKQ 98 (290)
T ss_dssp EEECCS-EEHHHHHHH
T ss_pred EEehhc-cchHHHHHH
Confidence 999998 598888753
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=118.40 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=68.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-----Cc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-----DF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~~ 504 (524)
.++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++|||||++++++... ..
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 46799999999999999999996 478999999996532 34567899999999999999999999999543 56
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.|+||||+. |+|.+++++
T Consensus 132 ~~lv~e~~~-~~L~~~~~~ 149 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRT 149 (458)
T ss_dssp EEEEECCCS-EEHHHHHHS
T ss_pred EEEEEeccc-cchhhhccc
Confidence 899999985 799998864
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-10 Score=112.77 Aligned_cols=101 Identities=14% Similarity=0.194 Sum_probs=85.0
Q ss_pred cccchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCC--CCCccceeE
Q 040301 422 RRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVC--HRNLIKILS 497 (524)
Q Consensus 422 ~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~--H~niv~l~~ 497 (524)
+.+.++.+....++|+..+.||+|+||.||++...+++.||||.+.... ....+.+.+|++++++++ ||||+++++
T Consensus 16 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~ 95 (313)
T 3cek_A 16 ENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD 95 (313)
T ss_dssp ----CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEE
T ss_pred CCCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEE
Confidence 4456677777788899999999999999999998788999999996432 445678999999999997 599999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..++..++||| +.+|+|.+++++
T Consensus 96 ~~~~~~~~~lv~e-~~~~~L~~~l~~ 120 (313)
T 3cek_A 96 YEITDQYIYMVME-CGNIDLNSWLKK 120 (313)
T ss_dssp EEECSSEEEEEEC-CCSEEHHHHHHH
T ss_pred EeecCCEEEEEEe-cCCCcHHHHHHh
Confidence 9999999999999 567899999864
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=122.79 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=71.0
Q ss_pred CcccCCCCceEEEEEe---CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI---SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.+ ..++.||||+++... ....++|.+|++++++++|||||+++++|.. +..++|||||++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 4799999999999975 345789999997543 3346789999999999999999999999964 568999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 454 g~L~~~l~~ 462 (635)
T 4fl3_A 454 GPLNKYLQQ 462 (635)
T ss_dssp EEHHHHHHH
T ss_pred CCHHHHHhh
Confidence 999999864
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=114.43 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=70.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCC--cc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPD--FK 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~--~~ 505 (524)
..++|+..+.||+|+||.||+|.. .+++.||||++... .....+.+.+|+.+++++. ||||+++++++..++ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 456799999999999999999996 57899999999543 2445677889999999997 999999999998654 68
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|+|||||+ |+|.++++.
T Consensus 87 ~lv~e~~~-~~L~~~~~~ 103 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRA 103 (388)
T ss_dssp EEEEECCS-EEHHHHHHH
T ss_pred EEEecccC-cCHHHHHHc
Confidence 99999998 699988863
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.9e-11 Score=114.05 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=80.4
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEc---
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSN--- 501 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~--- 501 (524)
+.+.....+|+..+.||+|+||.||+|.. .+++.||||++........+.+.+|+.++.++. ||||+++++++..
T Consensus 21 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~ 100 (337)
T 3ll6_A 21 QTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKE 100 (337)
T ss_dssp CEEEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTT
T ss_pred ceeeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhcccccccccc
Confidence 44445556899999999999999999996 478999999997666566778999999999996 9999999999953
Q ss_pred -----CCcceEEEcccCCCCHHHHHHh
Q 040301 502 -----PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 -----~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
....++||||+. |+|.+++++
T Consensus 101 ~~~~~~~~~~lv~e~~~-g~L~~~l~~ 126 (337)
T 3ll6_A 101 ESDTGQAEFLLLTELCK-GQLVEFLKK 126 (337)
T ss_dssp TSTTSSEEEEEEEECCS-EEHHHHHHH
T ss_pred ccccCCceEEEEEEecC-CCHHHHHHH
Confidence 344799999997 799998864
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=122.10 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=79.6
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
.+.....++|+..+.||+|+||.||+|.+. .+..||+|.+.... ....+.|.+|+.++++++||||+++++++.
T Consensus 383 ~~~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~- 461 (656)
T 2j0j_A 383 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT- 461 (656)
T ss_dssp GGTBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-
T ss_pred cccccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-
Confidence 344455677888999999999999999963 24569999986533 445678999999999999999999999984
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..++||||+++|+|.++++.
T Consensus 462 ~~~~~lv~E~~~~g~L~~~l~~ 483 (656)
T 2j0j_A 462 ENPVWIIMELCTLGELRSFLQV 483 (656)
T ss_dssp SSSCEEEEECCTTCBHHHHHHH
T ss_pred cCceEEEEEcCCCCcHHHHHHh
Confidence 5679999999999999999863
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.2e-11 Score=117.00 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=70.7
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------ 502 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------ 502 (524)
....++|+..+.||+|+||.||+|.. .+++.||||++..... ...+|+++++.++|||||++++++...
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 44567899999999999999999996 5789999999965432 223799999999999999999998543
Q ss_pred --------------------------------CcceEEEcccCCCCHHHHHHh
Q 040301 503 --------------------------------DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 --------------------------------~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...++|||||+ |+|.+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~ 130 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKS 130 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHH
Confidence 34889999998 588887753
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=117.59 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=78.3
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-----C
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-----D 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~ 503 (524)
..++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++||||+++++++... .
T Consensus 24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 346899999999999999999996 467889999997532 34567899999999999999999999999876 5
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..|+||||++ |+|.+++++
T Consensus 104 ~~~lv~e~~~-~~L~~~~~~ 122 (432)
T 3n9x_A 104 ELYIVLEIAD-SDLKKLFKT 122 (432)
T ss_dssp CEEEEEECCS-EEHHHHHHS
T ss_pred eEEEEEecCC-cCHHHHHhc
Confidence 6899999997 599998864
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.8e-11 Score=114.72 Aligned_cols=91 Identities=23% Similarity=0.377 Sum_probs=72.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-----HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
..++|+..+.||+|+||.||+|.. .+|+.||||.+..... ...+.+.+|++++++++||||+++++++...+..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 456799999999999999999997 4689999999965331 1134688999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++ +|.+++++
T Consensus 88 ~lv~e~~~~-~l~~~~~~ 104 (346)
T 1ua2_A 88 SLVFDFMET-DLEVIIKD 104 (346)
T ss_dssp EEEEECCSE-EHHHHHTT
T ss_pred EEEEEcCCC-CHHHHHHh
Confidence 999999985 88888753
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-11 Score=114.23 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=83.3
Q ss_pred ccchhhhhhhhcccccc-CcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC-CCCCccceeE
Q 040301 423 RTSYLDIQRATDEFNEC-NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV-CHRNLIKILS 497 (524)
Q Consensus 423 ~~~~~~l~~~~~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l-~H~niv~l~~ 497 (524)
.+.++....-.+.|... +.||+|+||.||+|.. .+++.||+|.+.... ......+.+|+.++..+ .||||+++++
T Consensus 17 n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~ 96 (327)
T 3lm5_A 17 NLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96 (327)
T ss_dssp CCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEE
T ss_pred hhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 34455556666677776 7899999999999997 468999999997543 23357889999999999 5699999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHH
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
++.+.+..++||||+++|+|.+++.
T Consensus 97 ~~~~~~~~~lv~e~~~~~~L~~~~~ 121 (327)
T 3lm5_A 97 VYENTSEIILILEYAAGGEIFSLCL 121 (327)
T ss_dssp EEECSSEEEEEEECCTTEEGGGGGS
T ss_pred EEEeCCeEEEEEEecCCCcHHHHHH
Confidence 9999999999999999999988763
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=109.83 Aligned_cols=90 Identities=24% Similarity=0.320 Sum_probs=69.3
Q ss_pred hccccccCcccCCCCceEEEEEe--CCCC--EEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI--SDWT--NVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~--~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.++|+..+.||+|+||.||+|.+ .+++ .||||.+.... ....+.+.+|++++++++||||+++++++..+. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 46799999999999999999985 2333 58999986542 345678999999999999999999999998755 8
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 96 ~~v~e~~~~~~L~~~l~~ 113 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRK 113 (291)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred eeeEecccCCCHHHHHHh
Confidence 999999999999999863
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=117.24 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=75.1
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----- 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 503 (524)
..++|+..+.||+|+||.||+|.. .+++.||||++... .....+.+.+|+.+++.++|||||++++++....
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 356799999999999999999996 46889999999754 2345678899999999999999999999997654
Q ss_pred -cceEEEcccCCCCHHHHHH
Q 040301 504 -FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 -~~~lv~e~~~~gsL~~~l~ 522 (524)
..|+|||||++ ++.+.++
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~ 158 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQ 158 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHT
T ss_pred CeEEEEEeCCCC-CHHHHHh
Confidence 46999999986 5666553
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=122.53 Aligned_cols=92 Identities=20% Similarity=0.128 Sum_probs=79.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcce
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~ 506 (524)
..++|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|..++..+ +||+|+++++++.+.+.+|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 346799999999999999999997 468889999997542 23356688899999987 7999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 419 lV~E~~~gg~L~~~l~~ 435 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQ 435 (674)
T ss_dssp EEEECCCSCBHHHHHHH
T ss_pred EEEeCcCCCcHHHHHHh
Confidence 99999999999999864
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-08 Score=98.51 Aligned_cols=284 Identities=10% Similarity=0.056 Sum_probs=160.1
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
++|+.+.+.. .++......|.++.+|+.++|..+ ++.+.. .+|.+. +|+.+.+-.+ +..+....|..
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~--------~aF~~c-~l~~i~~~~~-l~~I~~~aF~~- 112 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGD--------GAFADT-KLQSYTGMER-VKKFGDYVFQG- 112 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECT--------TTTTTC-CCCEEEECTT-CCEECTTTTTT-
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEech--------hhhcCC-CCceEECCce-eeEeccceecc-
Confidence 4566666653 455455566667777777777543 555543 555554 4666655432 33333334433
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc------------cCCc
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG------------SIPY 167 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~------------~~~~ 167 (524)
. +|+.+.+..+.. ......|.+. .|+.+.+.. .+..+...+|..+.+++.+.+..+.... ....
T Consensus 113 ~-~L~~i~lp~~~~-~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 113 T-DLDDFEFPGATT-EIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp C-CCSEEECCTTCC-EECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred C-CcccccCCCccc-cccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceec
Confidence 2 566666654422 2233334333 455554433 2333445556666666666554433221 1111
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCC
Q 040301 168 DLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247 (524)
Q Consensus 168 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 247 (524)
.+.....+..+.+..... ......+....+|+.+.+..+ +.......+..+..|+.+.+..+ +...-...|..+.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 233334444444433221 133344555667777776544 33344566777777888877665 444445567777788
Q ss_pred CEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccC
Q 040301 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325 (524)
Q Consensus 248 ~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~ 325 (524)
+.+.+..+ +.... ..+..+.+|+.+.+.++.++......|.++.+|+.+.+..+ ++..-..+|..+.+|+.+.+..
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 88877544 43333 56777788888888877777666677788888888888654 5545556777777787776654
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-11 Score=118.83 Aligned_cols=92 Identities=11% Similarity=0.194 Sum_probs=74.5
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc---chHHHHHHHHHH---HHHhcCCCCCcccee-------
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ---LERAFRSFDSEC---EVLRNVCHRNLIKIL------- 496 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~Ei---~~l~~l~H~niv~l~------- 496 (524)
...++|+..+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+ +.+++++|||||+++
T Consensus 70 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~ 149 (377)
T 3byv_A 70 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF 149 (377)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCS
T ss_pred CCCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhh
Confidence 3457899999999999999999996 56899999999743 234567899999 556666899999998
Q ss_pred EEEEcCC-----------------cceEEEcccCCCCHHHHHHh
Q 040301 497 SSCSNPD-----------------FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 497 ~~~~~~~-----------------~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++..++ ..|+||||+ +|+|.+++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~ 192 (377)
T 3byv_A 150 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEV 192 (377)
T ss_dssp EEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHH
T ss_pred hhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHh
Confidence 6666553 278999999 6899999864
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.7e-12 Score=123.02 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=70.4
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--------hHHHHHHHHHHHHHhcCC---------CCCccce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--------ERAFRSFDSECEVLRNVC---------HRNLIKI 495 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~Ei~~l~~l~---------H~niv~l 495 (524)
.++|+..+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|+.++++++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46789999999999999999998 67899999997542 123467889999988885 7777777
Q ss_pred eEEEE------------------------------cCCcceEEEcccCCCCHHHHH
Q 040301 496 LSSCS------------------------------NPDFKALMWGRLLNISITIIR 521 (524)
Q Consensus 496 ~~~~~------------------------------~~~~~~lv~e~~~~gsL~~~l 521 (524)
.+.+. .++..|+|||||++|++.+.+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~ 153 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQM 153 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGG
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHH
Confidence 77643 267899999999999765554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.6e-11 Score=126.23 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=75.2
Q ss_pred hccccccCcccCCCCceEEEEEeC--CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc-----
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS--DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF----- 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~----- 504 (524)
.++|+..+.||+|+||.||+|... +++.||||.+.... ......+.+|++++++++|||||++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 367999999999999999999974 57899999986433 3456678999999999999999999999987665
Q ss_pred ceEEEcccCCCCHHHHHH
Q 040301 505 KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~ 522 (524)
.|+||||+++|+|.++++
T Consensus 159 ~~lv~E~~~g~~L~~~~~ 176 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKG 176 (681)
T ss_dssp EEEEEECCCCEECC----
T ss_pred eEEEEEeCCCCcHHHHHh
Confidence 699999999999988764
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.7e-11 Score=124.36 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=76.9
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc-chHHHHHHHHHHHHHhcCCCCCccceeEEEEc------CCc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ-LERAFRSFDSECEVLRNVCHRNLIKILSSCSN------PDF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~------~~~ 504 (524)
.++|+..+.||+|+||.||+|.. .+|+.||||.+... .....+.+.+|++++++++||||+++++++.. ++.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 36799999999999999999996 56889999998654 34456789999999999999999999998765 667
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++|||||++|+|.+++++
T Consensus 93 ~~LVmEy~~ggsL~~~L~~ 111 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQ 111 (676)
T ss_dssp CCCEEECCSSCBHHHHHHS
T ss_pred EEEEEEeCCCCCHHHHHHh
Confidence 8999999999999999864
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-10 Score=111.77 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=76.0
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD------ 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------ 503 (524)
.++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 46799999999999999999996 468889999997532 345677889999999999999999999998765
Q ss_pred cceEEEcccCCCCHHHHHH
Q 040301 504 FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~ 522 (524)
..++||||++ |+|.++++
T Consensus 104 ~~~lv~e~~~-~~l~~~~~ 121 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQ 121 (371)
T ss_dssp EEEEEEECCS-EEHHHHHH
T ss_pred ceEEEEEcCC-CCHHHHHh
Confidence 6799999998 47888775
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-10 Score=111.36 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=77.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-----Cc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-----DF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~~ 504 (524)
..++|+..+.||+|+||.||+|.. .+|+.||||.+.... ......+.+|++++++++||||+++++++..+ ..
T Consensus 9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 88 (353)
T 2b9h_A 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE 88 (353)
T ss_dssp SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence 346899999999999999999997 468899999996543 34466788999999999999999999998764 67
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||++ |+|.+++++
T Consensus 89 ~~lv~e~~~-~~L~~~~~~ 106 (353)
T 2b9h_A 89 VYIIQELMQ-TDLHRVIST 106 (353)
T ss_dssp EEEEECCCS-EEHHHHHHH
T ss_pred EEEEEeccC-ccHHHHHhh
Confidence 899999998 699988753
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-11 Score=116.45 Aligned_cols=98 Identities=21% Similarity=0.431 Sum_probs=82.9
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
...+++....++|+..+.||+|+||.||+|...+ .+|+|.+.... ....+.+.+|+.++++++||||+++++++.+
T Consensus 23 ~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~ 100 (319)
T 2y4i_B 23 IFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMS 100 (319)
T ss_dssp CCGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEEC
T ss_pred cccccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEec
Confidence 3456666777889999999999999999999743 48999986432 2234567789999999999999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..++||||+++|+|.+++++
T Consensus 101 ~~~~~iv~e~~~~~~L~~~l~~ 122 (319)
T 2y4i_B 101 PPHLAIITSLCKGRTLYSVVRD 122 (319)
T ss_dssp SSCEEEECBCCCSEEHHHHTTS
T ss_pred CCceEEEeecccCCcHHHHHHh
Confidence 9999999999999999999864
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-10 Score=114.31 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=70.4
Q ss_pred cccccc-CcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHh-cCCCCCccceeEEEEc----CCcce
Q 040301 434 DEFNEC-NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLR-NVCHRNLIKILSSCSN----PDFKA 506 (524)
Q Consensus 434 ~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~-~l~H~niv~l~~~~~~----~~~~~ 506 (524)
++|... +.||+|+||.||+|.. .+++.||||+++.. ..+.+|++++. ..+||||+++++++.. ....|
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 456665 6899999999999996 46889999999643 34667888874 4589999999999875 56789
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|||||++|+|.+++++
T Consensus 136 lv~E~~~gg~L~~~l~~ 152 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQD 152 (400)
T ss_dssp EEEECCCSEEHHHHHHC
T ss_pred EEEEeCCCCcHHHHHHH
Confidence 99999999999999864
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-10 Score=112.59 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=79.2
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC---
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--- 502 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--- 502 (524)
+.......|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++||||+++++++...
T Consensus 21 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 100 (364)
T 3qyz_A 21 QVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIE 100 (364)
T ss_dssp CBCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTT
T ss_pred EeccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCcc
Confidence 3334556899999999999999999996 467889999997533 34457889999999999999999999999765
Q ss_pred --CcceEEEcccCCCCHHHHHHh
Q 040301 503 --DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 --~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...++||||++ |+|.+++++
T Consensus 101 ~~~~~~iv~e~~~-~~L~~~l~~ 122 (364)
T 3qyz_A 101 QMKDVYIVQDLME-TDLYKLLKT 122 (364)
T ss_dssp TCCCEEEEEECCS-EEHHHHHHH
T ss_pred ccceEEEEEcccC-cCHHHHHHh
Confidence 36899999998 599988764
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6e-10 Score=108.15 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=75.2
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHH-HHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECE-VLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~-~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
...++|+..+.||+|+||.||+|.. .+++.||||.+.... .....++.+|+. +++.++||||+++++++..++..++
T Consensus 19 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l 98 (327)
T 3aln_A 19 FTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI 98 (327)
T ss_dssp CCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred cCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence 3457899999999999999999997 468899999997643 334456666766 6778899999999999999999999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||+++ +|.++++
T Consensus 99 v~e~~~~-~l~~~~~ 112 (327)
T 3aln_A 99 CMELMST-SFDKFYK 112 (327)
T ss_dssp EECCCSE-EHHHHHH
T ss_pred EEeecCC-ChHHHHH
Confidence 9999985 8888775
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-10 Score=108.86 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=71.9
Q ss_pred cccccc-CcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHH-hcCCCCCccceeEEEEc----CCcce
Q 040301 434 DEFNEC-NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVL-RNVCHRNLIKILSSCSN----PDFKA 506 (524)
Q Consensus 434 ~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l-~~l~H~niv~l~~~~~~----~~~~~ 506 (524)
++|... +.||+|+||.||+|.. .+++.||+|.++.. ..+.+|++++ +..+||||+++++++.. ....+
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 91 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 91 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence 456666 6799999999999996 57889999999643 3466788887 66699999999999987 66789
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 92 lv~e~~~~~~L~~~l~~ 108 (299)
T 3m2w_A 92 IVMECLDGGELFSRIQD 108 (299)
T ss_dssp EEECCCCSCBHHHHHHH
T ss_pred EEEeecCCCcHHHHHHh
Confidence 99999999999999864
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.9e-11 Score=114.32 Aligned_cols=89 Identities=22% Similarity=0.353 Sum_probs=72.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCE----EEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTN----VAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|+..+.||+|+||.||+|.. .+++. ||+|.+.... ....+.+.+|+.+++.++||||+++++++. ++..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 5688899999999999999996 34443 7888775432 223356778999999999999999999986 567899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 92 v~e~~~~~~L~~~l~~ 107 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQ 107 (325)
T ss_dssp EEECCTTCBSHHHHHS
T ss_pred EEEeCCCCCHHHHHHH
Confidence 9999999999999864
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.5e-10 Score=111.00 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=75.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------- 502 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------- 502 (524)
.++|+..+.||+|+||.||+|+. .+++.||||++.... ......+.+|+++++.++||||+++++++...
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 46799999999999999999997 578999999985433 22345788999999999999999999999874
Q ss_pred -CcceEEEcccCCCCHHHHHHh
Q 040301 503 -DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 -~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..++||||+++ ++.+.+.+
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~ 116 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSN 116 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHC
T ss_pred CceEEEEEeccCC-CHHHHHhh
Confidence 468999999985 77777643
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-10 Score=110.04 Aligned_cols=90 Identities=26% Similarity=0.359 Sum_probs=74.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCE----EEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTN----VAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
.++|+..+.||+|+||.||+|.. .+++. ||+|.+.... ....+.+.+|+.++++++||||+++++++..+. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 35799999999999999999996 34443 5777775432 345678999999999999999999999998764 88
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|+||+++|+|.+++++
T Consensus 93 ~v~~~~~~g~L~~~l~~ 109 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVRE 109 (327)
T ss_dssp EEECCCSSCBHHHHHHH
T ss_pred EEEEecCCCcHHHHHHh
Confidence 99999999999999864
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-10 Score=112.63 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=71.6
Q ss_pred ccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
|...+.||+|+||+||.+...+|+.||||++.... .+.+.+|+++++++ +|||||++++++.+++..++|||||.
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~- 92 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN- 92 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-
T ss_pred eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-
Confidence 44467899999999987666689999999987543 34578899999876 89999999999999999999999996
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 93 gsL~~~l~~ 101 (434)
T 2rio_A 93 LNLQDLVES 101 (434)
T ss_dssp EEHHHHHHT
T ss_pred CCHHHHHhc
Confidence 699999864
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-10 Score=112.21 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=69.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------ 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------ 502 (524)
..++|+..+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++++.++||||+++++++...
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 457899999999999999999996 56889999999653 234567888999999999999999999999764
Q ss_pred CcceEEEcccCCCCHHHHHH
Q 040301 503 DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~ 522 (524)
...|+|+||+ +++|.++++
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~ 125 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVK 125 (367)
T ss_dssp CCCEEEEECC-CEECC----
T ss_pred CeEEEEeccc-CCCHHHHHh
Confidence 5679999999 689888775
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-10 Score=107.53 Aligned_cols=91 Identities=21% Similarity=0.322 Sum_probs=71.7
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-----HHHHHHHHHHHHHhcC---CCCCccceeEEEEcC
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNV---CHRNLIKILSSCSNP 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~~~ 502 (524)
..++|+..+.||+|+||.||+|+. .+++.||||.+..... .....+.+|+.+++++ +||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 356899999999999999999996 5789999999964321 1134566788777666 499999999999876
Q ss_pred C-----cceEEEcccCCCCHHHHHHh
Q 040301 503 D-----FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~-----~~~lv~e~~~~gsL~~~l~~ 523 (524)
. ..++||||++ |+|.+++++
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~ 111 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDK 111 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHT
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhh
Confidence 5 4799999998 699999864
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-10 Score=112.22 Aligned_cols=96 Identities=25% Similarity=0.293 Sum_probs=70.2
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcC----CCCCcccee
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNV----CHRNLIKIL 496 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l----~H~niv~l~ 496 (524)
+.....++|+..+.||+|+||.||+|.. .+++.||||.+..... .....+.+|+.++.++ +||||++++
T Consensus 25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~ 104 (312)
T 2iwi_A 25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL 104 (312)
T ss_dssp --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence 3344567899999999999999999996 5688999999965431 1233466799999888 899999999
Q ss_pred EEEEcCCcceEEEcc-cCCCCHHHHHHh
Q 040301 497 SSCSNPDFKALMWGR-LLNISITIIRRH 523 (524)
Q Consensus 497 ~~~~~~~~~~lv~e~-~~~gsL~~~l~~ 523 (524)
+++...+..++|||| +++|+|.+++++
T Consensus 105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~ 132 (312)
T 2iwi_A 105 DWFETQEGFMLVLERPLPAQDLFDYITE 132 (312)
T ss_dssp EEC-----CEEEEECCSSEEEHHHHHHH
T ss_pred EEEecCCeEEEEEEecCCCCCHHHHHHh
Confidence 999999999999999 899999999863
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.8e-10 Score=110.86 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=76.6
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc---
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK--- 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~--- 505 (524)
..+.|...+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.+++.++||||+++++++...+..
T Consensus 40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 346799999999999999999996 468899999997532 34467889999999999999999999999887655
Q ss_pred ---eEEEcccCCCCHHHHHH
Q 040301 506 ---ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ---~lv~e~~~~gsL~~~l~ 522 (524)
++||||++ |+|.+++.
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~ 138 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMG 138 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTT
T ss_pred eeEEEEEcccc-ccHHHHhh
Confidence 99999998 68887654
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-10 Score=106.99 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=77.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.+.... ..+.+.+|+++++.+ +|++++++++++..+...++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 45799999999999999999996 578899999986543 234577899999999 89999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+ +|+|.+++++
T Consensus 87 ~~-~~~L~~~l~~ 98 (298)
T 1csn_A 87 LL-GPSLEDLLDL 98 (298)
T ss_dssp CC-CCBHHHHHHH
T ss_pred ec-CCCHHHHHHH
Confidence 99 9999999874
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-10 Score=111.29 Aligned_cols=93 Identities=24% Similarity=0.341 Sum_probs=74.8
Q ss_pred hhhhccccccCcccCCCCceEEEEEe--CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC---CCCCccceeEEEE--
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI--SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV---CHRNLIKILSSCS-- 500 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~-- 500 (524)
..+.++|+..+.||+|+||.||+|.. .+++.||+|++.... ......+.+|+.+++.+ +||||+++++++.
T Consensus 7 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~ 86 (326)
T 1blx_A 7 CRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS 86 (326)
T ss_dssp CCGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred cCchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence 34567899999999999999999997 467889999996533 11223566788777665 8999999999997
Q ss_pred ---cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 ---NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ---~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.....++||||++ |+|.+++++
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~l~~ 111 (326)
T 1blx_A 87 RTDRETKLTLVFEHVD-QDLTTYLDK 111 (326)
T ss_dssp ECSSEEEEEEEEECCS-CBHHHHHHH
T ss_pred ccCCCceEEEEEecCC-CCHHHHHHh
Confidence 4567899999998 699999864
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.4e-10 Score=109.51 Aligned_cols=88 Identities=24% Similarity=0.332 Sum_probs=69.5
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHH--HhcCCCCCccceeEEEEc-----CCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEV--LRNVCHRNLIKILSSCSN-----PDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~--l~~l~H~niv~l~~~~~~-----~~~ 504 (524)
..++|+..+.||+|+||.||+|.. +++.||||++..... +.+..|.++ +..++||||+++++++.. ...
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 11 DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred ChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence 346789999999999999999987 678999999975432 334445444 556899999999986543 235
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++|||||++|+|.+++++
T Consensus 87 ~~lv~e~~~~g~L~~~l~~ 105 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSL 105 (336)
T ss_dssp EEEEECCCTTCBHHHHHHH
T ss_pred EEEEEecCCCCcHHHHHhh
Confidence 7899999999999999864
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.7e-10 Score=109.54 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=71.8
Q ss_pred hhccccccCcccCCCCceEEEEEeCC------CCEEEEEEeeccchHH-----------HHHHHHHHHHHhcCCCCCccc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISD------WTNVAIKIFNLQLERA-----------FRSFDSECEVLRNVCHRNLIK 494 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~~~~~~~~~-----------~~~~~~Ei~~l~~l~H~niv~ 494 (524)
..++|+..+.||+|+||.||+|.... ++.||||.+....... ...+.+|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 45689999999999999999999743 4679999987543211 123456677788899999999
Q ss_pred eeEEEEcC----CcceEEEcccCCCCHHHHHHh
Q 040301 495 ILSSCSNP----DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 495 l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++++... ...++||||| +|+|.+++++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~ 144 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEA 144 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHH
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHh
Confidence 99999775 4589999999 9999999864
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.1e-10 Score=109.53 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=68.9
Q ss_pred hccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccchH-----------HHHHHHHHHHHHhcCCCCCccceeE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQLER-----------AFRSFDSECEVLRNVCHRNLIKILS 497 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~Ei~~l~~l~H~niv~l~~ 497 (524)
.++|...+.||+|+||.||+|... ++..+|+|.+...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 367999999999999999999974 5678999999754311 1234778899999999999999999
Q ss_pred EEEc----CCcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSN----PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~----~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++.. ....++||||+ +|+|.+++++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~ 144 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQ 144 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBG
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHh
Confidence 9988 67899999999 9999998753
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.4e-10 Score=109.75 Aligned_cols=89 Identities=20% Similarity=0.221 Sum_probs=75.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc-----
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF----- 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~----- 504 (524)
.++|...+.||+|+||.||+|.. .+|+.||||.+.... ....+.+.+|+.+++.++||||+++++++...+.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 46799999999999999999996 468899999996532 3446778999999999999999999999987754
Q ss_pred -ceEEEcccCCCCHHHHHH
Q 040301 505 -KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 -~~lv~e~~~~gsL~~~l~ 522 (524)
.++||||++ |+|.++++
T Consensus 103 ~~~lv~e~~~-~~l~~~~~ 120 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMG 120 (353)
T ss_dssp CCEEEEECCS-EEGGGTTT
T ss_pred eEEEEecccc-CCHHHHhc
Confidence 499999998 58876653
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-10 Score=112.55 Aligned_cols=85 Identities=8% Similarity=0.096 Sum_probs=71.4
Q ss_pred hccccccCcccCCCCceEEEEEeC---------CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccc---------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS---------DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK--------- 494 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~---------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~--------- 494 (524)
.++|+..+.||+|+||.||+|+.. +++.||+|.+... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 368999999999999999999974 3788999998754 35778999999999999987
Q ss_pred ------eeEEEEc-CCcceEEEcccCCCCHHHHHHh
Q 040301 495 ------ILSSCSN-PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 495 ------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++++.. ++..++||||+ +|+|.+++++
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~ 150 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDV 150 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHH
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHh
Confidence 6777776 67899999999 9999999864
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-07 Score=93.09 Aligned_cols=274 Identities=11% Similarity=0.021 Sum_probs=190.4
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+|+.++|..+ ++......|.+. +|+.+.+.. .++.+.. .+|.. .+|+.+++..+ +.......|...
T Consensus 69 ~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~--------~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~ 135 (379)
T 4h09_A 69 YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGD--------YVFQG-TDLDDFEFPGA-TTEIGNYIFYNS 135 (379)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECT--------TTTTT-CCCSEEECCTT-CCEECTTTTTTC
T ss_pred CCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEecc--------ceecc-CCcccccCCCc-cccccccccccc
Confidence 68999999754 776677788876 788888864 4665544 56665 47999999765 333444445443
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcc------------cCCccccCCCCCCeEecccCcccccCCc
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG------------TISPTMGRLKQLRGLSLKYNNLEGSIPY 167 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 167 (524)
+++.+.+..+ +.......|.+..+++.+.+..+.... .....+.....+..+.+..... .....
T Consensus 136 --~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~ 211 (379)
T 4h09_A 136 --SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAY 211 (379)
T ss_dssp --CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTT
T ss_pred --eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeec
Confidence 6777766654 444556678888899988876654321 1122344455666665544432 24556
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCC
Q 040301 168 DLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247 (524)
Q Consensus 168 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 247 (524)
.+....+|+.+.+..+ +.......|..+..|+.+.+..+ ++......|..+.+|+.+.+..+ +.......|..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 6777888988888665 34355667888899999998766 55455677888899999998754 544556678899999
Q ss_pred CEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCC
Q 040301 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETL 315 (524)
Q Consensus 248 ~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 315 (524)
+.+.+.++.++.+. ..|.++.+|+.+.|..+ ++.....+|.++.+|+.+.+..+ ++..-..+|..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 99999988887666 67889999999999765 66556678899999999988654 443444555554
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.9e-10 Score=111.17 Aligned_cols=86 Identities=23% Similarity=0.211 Sum_probs=65.6
Q ss_pred ccccc-cCcccCCCCceEEEEEeC---CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcceE
Q 040301 434 DEFNE-CNLLGTGSFGSVYKGTIS---DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFKAL 507 (524)
Q Consensus 434 ~~~~~-~~~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~~l 507 (524)
+.|+. .++||+|+||.||+|... +++.||||.+.... ....+.+|++++++++|||||++++++.. +...++
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 34655 458999999999999964 57789999997543 23467899999999999999999999954 668999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||++ |+|.++++
T Consensus 98 v~e~~~-~~l~~~~~ 111 (405)
T 3rgf_A 98 LFDYAE-HDLWHIIK 111 (405)
T ss_dssp EEECCS-EEHHHHHH
T ss_pred EEeCCC-CCHHHHHH
Confidence 999997 58888775
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=103.06 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=67.1
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hH-HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ER-AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~-~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.....++|+..+.||+|+||.||+|.. .+++.||||.+.... .. ..+.+..+..+++.++||||+++++++.+++..
T Consensus 20 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~ 99 (318)
T 2dyl_A 20 YQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDV 99 (318)
T ss_dssp EECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred hhhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcE
Confidence 344556789999999999999999997 478999999997543 22 233444555678888999999999999999999
Q ss_pred eEEEcccCCCCHHHHH
Q 040301 506 ALMWGRLLNISITIIR 521 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l 521 (524)
++||||+ ++.+..+.
T Consensus 100 ~lv~e~~-~~~~~~l~ 114 (318)
T 2dyl_A 100 FIAMELM-GTCAEKLK 114 (318)
T ss_dssp EEEECCC-SEEHHHHH
T ss_pred EEEEecc-CCcHHHHH
Confidence 9999999 45665554
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.5e-10 Score=112.07 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=73.9
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 509 (524)
....+|...+.||+|+||+||.....+++.||||++..... ..+.+|+++++++ +|||||++++++.+.+..|+||
T Consensus 21 i~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~ 97 (432)
T 3p23_A 21 VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAI 97 (432)
T ss_dssp ETTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEE
T ss_pred EccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEE
Confidence 34456888899999999996655556789999999965332 2345799999999 8999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||+ |+|.+++++
T Consensus 98 E~~~-g~L~~~l~~ 110 (432)
T 3p23_A 98 ELCA-ATLQEYVEQ 110 (432)
T ss_dssp ECCS-EEHHHHHHS
T ss_pred ECCC-CCHHHHHHh
Confidence 9997 699999864
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=106.78 Aligned_cols=160 Identities=13% Similarity=0.138 Sum_probs=72.6
Q ss_pred cccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCcccc--CCCCCCEEEccC--CcccccCCccccC
Q 040301 120 EIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC--HLKLMYGIRLTG--NKLSGHIPPCLAS 195 (524)
Q Consensus 120 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~--n~l~~~~~~~~~~ 195 (524)
.+..+|+|+.|++++|.-. .++. +. +++|+.|++..+.++......+. .+|+|+.|+|+. |...+.. .+
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~-- 239 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DM-- 239 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CG--
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hH--
Confidence 3455666777777665211 1222 22 56667776666665533222232 456666666542 1111000 00
Q ss_pred CCCCCEEEccCCcCCCccChhc--cCCCCCCEEEcCCCcCcccCCcCc---cCCCCCCEEEcCCCcCcccc-----cccc
Q 040301 196 LTSLRELHLGSNKLTSSIPSSL--WSLEYILMINLSSNSLNDSLPSNI---QTLKVLRVLDLSRNQLSGDI-----STIG 265 (524)
Q Consensus 196 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~-----~~~~ 265 (524)
. .+...+ ..+++|+.|+|.+|.+.+..+..+ ..+++|++|+|+.|.+.+.. ..+.
T Consensus 240 --------------~-~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 240 --------------N-VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304 (362)
T ss_dssp --------------G-GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred --------------H-HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc
Confidence 0 000001 123455555555554432111111 13456666666666655421 2234
Q ss_pred ccCCCCEEEccCCcccCCCcccccC-CCCCCEEeCCCCc
Q 040301 266 ALVDLETLSLASNQFQGPIPESVGS-LISLESLDLSGNN 303 (524)
Q Consensus 266 ~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~ 303 (524)
.+++|+.|+|++|.++...-..+.. + ...+++++++
T Consensus 305 ~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 4566777777766665433222322 1 3456666665
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=106.85 Aligned_cols=93 Identities=18% Similarity=0.134 Sum_probs=63.9
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc-
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF- 504 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~- 504 (524)
.......++|+..+.||+|+||.||+|.. .+++.||||++..... ....+.+|++.++.++||||+++++++...+.
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 34456678899999999999999999997 4689999999865432 23456678888899999999999999976433
Q ss_pred ------ceEEEcccCCCCHHHHH
Q 040301 505 ------KALMWGRLLNISITIIR 521 (524)
Q Consensus 505 ------~~lv~e~~~~gsL~~~l 521 (524)
.++||||+++ ++.+.+
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~ 116 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCC 116 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHH
T ss_pred cccceeEEEEeecccc-cHHHHH
Confidence 7899999986 555544
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-09 Score=109.76 Aligned_cols=86 Identities=14% Similarity=-0.040 Sum_probs=63.6
Q ss_pred cccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--------hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 437 NECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--------ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
...+.||+|+||.||+|.. .++.+|+|+..... ....+.|.+|++++++++||||+++..++...+..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 3456899999999999964 56788999874322 11245689999999999999999777777788889999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++++
T Consensus 418 mE~~~ggsL~~~l~~ 432 (540)
T 3en9_A 418 MSYINGKLAKDVIED 432 (540)
T ss_dssp EECCCSEEHHHHSTT
T ss_pred EECCCCCCHHHHHHH
Confidence 999999999998764
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=105.38 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=68.7
Q ss_pred hhccccccC-cccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCcc
Q 040301 432 ATDEFNECN-LLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDFK 505 (524)
Q Consensus 432 ~~~~~~~~~-~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~ 505 (524)
..++|...+ .||+|+||.||+|... +++.||||++..... ..+ .....++.++||||+++++++.. +...
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~---e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK-ARQ---EVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH-HHH---HHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH-HHH---HHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 446788854 6999999999999974 689999999965321 112 12233567799999999999976 4458
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 102 ~lv~e~~~gg~L~~~l~~ 119 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQE 119 (336)
T ss_dssp EEEEECCTTEEHHHHHHT
T ss_pred EEEEeccCCCCHHHHHHh
Confidence 999999999999999864
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-09 Score=107.91 Aligned_cols=90 Identities=20% Similarity=0.313 Sum_probs=75.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC------CCCCccceeEEEEcCCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV------CHRNLIKILSSCSNPDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l------~H~niv~l~~~~~~~~~ 504 (524)
....|+..+.||+|+||.||+|.. .+++.||||++.... ...+++.+|+++++.+ .|+||+++++++...+.
T Consensus 95 ~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 173 (429)
T 3kvw_A 95 VAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH 173 (429)
T ss_dssp ETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred ccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence 345699999999999999999986 468899999997543 3345677888887766 67899999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+. |+|.+++++
T Consensus 174 ~~lv~e~~~-~~L~~~l~~ 191 (429)
T 3kvw_A 174 ICMTFELLS-MNLYELIKK 191 (429)
T ss_dssp EEEEECCCC-CBHHHHHHH
T ss_pred EEEEEeccC-CCHHHHHHh
Confidence 999999997 699998864
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=107.04 Aligned_cols=90 Identities=9% Similarity=0.087 Sum_probs=62.3
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHH---HHHhcCCCCCcccee-------E
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSEC---EVLRNVCHRNLIKIL-------S 497 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei---~~l~~l~H~niv~l~-------~ 497 (524)
....|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+ ..++. +||||++++ +
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d 138 (371)
T 3q60_A 60 GERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSD 138 (371)
T ss_dssp CEEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCE
T ss_pred CceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeeh
Confidence 455689999999999999999996 478899999997643 23456677885 55556 799988755 4
Q ss_pred EEEcC-----------------CcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSNP-----------------DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~~-----------------~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..+ ...|+|||||+ |+|.+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~ 180 (371)
T 3q60_A 139 AVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFST 180 (371)
T ss_dssp EEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHH
T ss_pred heecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHH
Confidence 44432 23799999999 899999974
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-09 Score=105.83 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=75.9
Q ss_pred hccccccCcccCCCCceEEEEEe--CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCC------ccceeEEEEcCCc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI--SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN------LIKILSSCSNPDF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~n------iv~l~~~~~~~~~ 504 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.++... ...+.+.+|+++++.++|++ ++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 45799999999999999999986 367889999997543 34567889999988886654 9999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+ +|+|.+++++
T Consensus 92 ~~lv~e~~-~~~l~~~l~~ 109 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKE 109 (339)
T ss_dssp EEEEEECC-CCBHHHHHHH
T ss_pred EEEEEcCC-CCCHHHHHHh
Confidence 99999999 8899999864
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-09 Score=108.24 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=73.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC--------CCCccceeEEEE---
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC--------HRNLIKILSSCS--- 500 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~--------H~niv~l~~~~~--- 500 (524)
.++|+..+.||+|+||.||+|+. .+++.||||++.... ...+.+.+|+++++.++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 46799999999999999999996 568889999997543 34567889999999885 788999999998
Q ss_pred -cCCcceEEEcccCCCCHHHHHH
Q 040301 501 -NPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 501 -~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
.....++||||+ +|++.+++.
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~ 136 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWII 136 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHH
Confidence 556799999999 567776664
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.5e-10 Score=107.83 Aligned_cols=178 Identities=16% Similarity=0.203 Sum_probs=89.4
Q ss_pred CCCCeEEcccCcCcc-c-------CCccccCCCCCCeEecccCccc---------ccCCccccCCCCCCEEEccCCcccc
Q 040301 125 RGLTLLSLFNNDLNG-T-------ISPTMGRLKQLRGLSLKYNNLE---------GSIPYDLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 125 ~~L~~L~l~~n~l~~-~-------~~~~~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~l~~n~l~~ 187 (524)
..++.|.+......+ . +......+++|+.|.+..+... +.+...+..+|+|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456677776655431 1 1222445678888887654331 112334456677777777766311
Q ss_pred cCCccccCCCCCCEEEccCCcCCCccChhcc--CCCCCCEEEcCC--CcCccc-----CCcCc--cCCCCCCEEEcCCCc
Q 040301 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLW--SLEYILMINLSS--NSLNDS-----LPSNI--QTLKVLRVLDLSRNQ 256 (524)
Q Consensus 188 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~ 256 (524)
.++. +. +++|+.|++..+.+.......+. .+|+|+.|+|+. |...+. +...+ ..+++|+.|++.+|.
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1222 32 66777777776666533223332 567777777642 111110 11111 235666666666665
Q ss_pred Ccccc----ccccccCCCCEEEccCCcccCC----CcccccCCCCCCEEeCCCCcCC
Q 040301 257 LSGDI----STIGALVDLETLSLASNQFQGP----IPESVGSLISLESLDLSGNNLS 305 (524)
Q Consensus 257 l~~~~----~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 305 (524)
+.+.. .....+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 54321 1112345566666666655542 1222233455666666666554
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-09 Score=109.44 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=68.0
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------Ccce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------DFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------~~~~ 506 (524)
..|+..+.||+|+||.||+|+. .+++.||||++..... .+.+|+++++.++|||||+++++|... .+++
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 4688899999999999999997 4689999999965431 234799999999999999999998542 2367
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+||||+++ ++.+.++
T Consensus 130 lv~e~~~~-~l~~~~~ 144 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVAR 144 (420)
T ss_dssp EEEECCCE-EHHHHHH
T ss_pred eehhcccc-cHHHHHH
Confidence 99999985 6766654
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-09 Score=105.94 Aligned_cols=94 Identities=27% Similarity=0.305 Sum_probs=78.0
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcCC--CCCccceeEEEE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVC--HRNLIKILSSCS 500 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~ 500 (524)
....++|+..+.||+|+||.||+|.. .+++.||||.+..... ...+.+.+|+.++++++ ||||+++++++.
T Consensus 39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~ 118 (320)
T 3a99_A 39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE 118 (320)
T ss_dssp -CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred CCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence 33456799999999999999999996 5688999999975431 12245678999999996 599999999999
Q ss_pred cCCcceEEEcccCC-CCHHHHHHh
Q 040301 501 NPDFKALMWGRLLN-ISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~-gsL~~~l~~ 523 (524)
.++..++||||+.+ |+|.+++++
T Consensus 119 ~~~~~~lv~e~~~~~~~L~~~l~~ 142 (320)
T 3a99_A 119 RPDSFVLILERPEPVQDLFDFITE 142 (320)
T ss_dssp CSSEEEEEEECCSSEEEHHHHHHH
T ss_pred cCCcEEEEEEcCCCCccHHHHHhc
Confidence 99999999999987 899999863
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-09 Score=100.77 Aligned_cols=88 Identities=20% Similarity=0.326 Sum_probs=73.5
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEE-EcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC-SNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~-~~~~~~~lv~ 509 (524)
..++|+..+.||+|+||.||+|+. .+++.||||.+..... .+++.+|+++++.++|++++..++++ ..++..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 3uzp_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence 346799999999999999999996 6788999999865432 24588999999999998877666665 5567789999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+ +|+|.++++
T Consensus 85 e~~-~~~L~~~~~ 96 (296)
T 3uzp_A 85 ELL-GPSLEDLFN 96 (296)
T ss_dssp ECC-CCBHHHHHH
T ss_pred Eec-CCCHHHHHH
Confidence 999 899999986
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-09 Score=105.55 Aligned_cols=89 Identities=18% Similarity=0.267 Sum_probs=75.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-----------CCCccceeEEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-----------HRNLIKILSSCS 500 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-----------H~niv~l~~~~~ 500 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.+.... ...+.+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 35799999999999999999996 578899999997543 34567889999988876 899999999998
Q ss_pred cCC----cceEEEcccCCCCHHHHHHh
Q 040301 501 NPD----FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~----~~~lv~e~~~~gsL~~~l~~ 523 (524)
..+ ..++||||+ +|+|.+++++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~ 122 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKK 122 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHH
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHH
Confidence 654 789999999 8999999864
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.2e-09 Score=103.84 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=78.0
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CC-----CccceeEEE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HR-----NLIKILSSC 499 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~-----niv~l~~~~ 499 (524)
+.-....++|+..+.||+|+||.||+|.. .+++.||||++.... ...+++.+|+++++.++ |+ +|+++++++
T Consensus 47 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~ 125 (382)
T 2vx3_A 47 KNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHF 125 (382)
T ss_dssp CTTCEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEE
T ss_pred ecCCEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeee
Confidence 34445567899999999999999999996 467889999997543 34566778888888775 45 499999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...+..++||||++ |+|.+++++
T Consensus 126 ~~~~~~~lv~e~~~-~~L~~~l~~ 148 (382)
T 2vx3_A 126 MFRNHLCLVFEMLS-YNLYDLLRN 148 (382)
T ss_dssp EETTEEEEEEECCC-CBHHHHHHH
T ss_pred ccCCceEEEEecCC-CCHHHHHhh
Confidence 99999999999996 599999864
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.5e-09 Score=100.23 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=69.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEE-EcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC-SNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~-~~~~~~~lv~ 509 (524)
..++|+..+.||+|+||.||+|+. .+++.||||.+.... ..+++.+|+++++.++|++++..++++ ..++..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 456799999999999999999996 578899999875433 224577899999999988877777766 5677889999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+ +|+|.++++
T Consensus 85 e~~-~~~L~~~~~ 96 (296)
T 4hgt_A 85 ELL-GPSLEDLFN 96 (296)
T ss_dssp ECC-CCBHHHHHH
T ss_pred Ecc-CCCHHHHHH
Confidence 999 899999986
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-09 Score=106.04 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=65.1
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc------ce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF------KA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~------~~ 506 (524)
...|+..+.||+|+||.||+|....+..+|+|++..... ...+|+++++.++||||+++++++..... .+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 356999999999999999999986666799998864331 12369999999999999999999965433 78
Q ss_pred EEEcccCCCC
Q 040301 507 LMWGRLLNIS 516 (524)
Q Consensus 507 lv~e~~~~gs 516 (524)
+||||++++.
T Consensus 115 lv~e~~~~~l 124 (394)
T 4e7w_A 115 LVLEYVPETV 124 (394)
T ss_dssp EEEECCSEEH
T ss_pred EEeeccCccH
Confidence 9999998643
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=104.23 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=72.9
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC-CCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH-RNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H-~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|+. .+++.||||.+..... ..++.+|+++++.++| ++|..+..++...+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46799999999999999999996 5789999998865432 2357789999999987 556666667777888999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+ +|+|.++++.
T Consensus 84 ~~-g~sL~~ll~~ 95 (483)
T 3sv0_A 84 LL-GPSLEDLFNF 95 (483)
T ss_dssp CC-CCBHHHHHHH
T ss_pred CC-CCCHHHHHHh
Confidence 99 8999999863
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=9.7e-09 Score=97.12 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=69.7
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccch------------------HHHHHHHHHHHHHhcC
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE------------------RAFRSFDSECEVLRNV 487 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~Ei~~l~~l 487 (524)
+..+......|...+.||+|+||.||+|...+|+.||+|.++.... .....+.+|+++++++
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l 161 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 161 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 3445555566777799999999999999997789999999964321 2356789999999999
Q ss_pred CCCCccceeEEEEcCCcceEEEcccCCCCHHH
Q 040301 488 CHRNLIKILSSCSNPDFKALMWGRLLNISITI 519 (524)
Q Consensus 488 ~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~ 519 (524)
+ | +++.+++. .+..++|||||++|+|.+
T Consensus 162 ~--~-~~v~~~~~-~~~~~lvmE~~~g~~L~~ 189 (282)
T 1zar_A 162 Q--G-LAVPKVYA-WEGNAVLMELIDAKELYR 189 (282)
T ss_dssp T--T-SSSCCEEE-EETTEEEEECCCCEEGGG
T ss_pred c--C-CCcCeEEe-ccceEEEEEecCCCcHHH
Confidence 9 4 66666554 356799999999999976
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=9.9e-09 Score=100.55 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=74.0
Q ss_pred hccccccCcccCCCCceEEEEEeC-CC-CEEEEEEeeccchHHHHHHHHHHHHHhcCCCCC------ccceeEEEEcCCc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DW-TNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN------LIKILSSCSNPDF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~-~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~n------iv~l~~~~~~~~~ 504 (524)
.++|+..+.||+|+||.||+|... ++ +.||+|.++... ...+.+.+|+.++++++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 467999999999999999999963 44 689999997543 34567888999999887766 9999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+ +|++.+++.+
T Consensus 97 ~~lv~e~~-~~~l~~~l~~ 114 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKE 114 (355)
T ss_dssp EEEEEECC-CCBHHHHHHH
T ss_pred EEEEEecc-CCChHHHHHh
Confidence 99999999 5677777653
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-08 Score=104.84 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=61.2
Q ss_pred ccCCCCceEEEEE-eCCCCEEEEEEeeccc----------hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEE
Q 040301 442 LGTGSFGSVYKGT-ISDWTNVAIKIFNLQL----------ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 442 ig~g~~g~v~~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.+.|+.|....++ +-.|+.+|||.+.... ....++|.+|+++|+++ .|+||+++++++.++...||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 4455555554443 2357889999996531 23456799999999999 7999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||++||+|.++|++
T Consensus 322 Eyv~G~~L~d~i~~ 335 (569)
T 4azs_A 322 EKLPGRLLSDMLAA 335 (569)
T ss_dssp ECCCSEEHHHHHHT
T ss_pred ecCCCCcHHHHHHh
Confidence 99999999999975
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-08 Score=90.37 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=28.8
Q ss_pred CcccccccCCCEEEcccc-ccCCCCCCccccCccccCCCCCCCCEEEccCCCCCC
Q 040301 37 PNTFGNLRHLSSLLLTWN-NLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGG 90 (524)
Q Consensus 37 p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 90 (524)
...+...++|++|+|++| .+.... ...+...+...++|++|+|++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g----~~~l~~~L~~~~~L~~L~Ls~n~i~~ 79 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPT----LKACAEALKTNTYVKKFSIVGTRSND 79 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHH----HHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHH----HHHHHHHHHhCCCcCEEECcCCCCCh
Confidence 334455667777777777 665421 11111345556677777777777664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-08 Score=85.59 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=31.5
Q ss_pred cccCCCCCCEEEccCC-cCCCc----cChhccCCCCCCEEEcCCCcCccc----CCcCccCCCCCCEEEcCCCcCc
Q 040301 192 CLASLTSLRELHLGSN-KLTSS----IPSSLWSLEYILMINLSSNSLNDS----LPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 192 ~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
.+...++|++|+|++| .+... +...+...++|+.|+|++|.+.+. +...+...++|++|+|++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445556666666666 55421 223344445555555555555431 1122233344555555555444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.7e-08 Score=90.59 Aligned_cols=63 Identities=33% Similarity=0.459 Sum_probs=28.9
Q ss_pred CCCCCCEEEcCCCcCcc--cCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEEEccCCcccC
Q 040301 219 SLEYILMINLSSNSLND--SLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQG 282 (524)
Q Consensus 219 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~L~~N~l~~ 282 (524)
.+++|+.|+|++|++.+ .++..+..+++|+.|+|++|++++.. ..+..+ +|++|+|++|++.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 34555555555555544 22333444555555555555554431 112222 44555555555443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.33 E-value=4.7e-07 Score=83.87 Aligned_cols=100 Identities=21% Similarity=0.159 Sum_probs=65.8
Q ss_pred EEccCCccc---ccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc-
Q 040301 25 MDLSSNSFS---GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS- 100 (524)
Q Consensus 25 Ldls~n~l~---~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~- 100 (524)
++++.|+.. ..++....++++|++|+|++|+++++.. +| ..+..+++|+.|+|++|.+.+. ..+..+.
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~----l~--~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~ 219 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD----MS--SIVQKAPNLKILNLSGNELKSE--RELDKIKG 219 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGG----GT--THHHHSTTCCEEECTTSCCCSG--GGGGGGTT
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCcc----ch--hHHhhCCCCCEEECCCCccCCc--hhhhhccc
Confidence 667777443 2222222467888888888888877642 12 4455778888888888888865 2222221
Q ss_pred ccccEEEeccCcccccCC-------ccccCCCCCCeEEc
Q 040301 101 ASFQNFYAFNCKLKGNIP-------QEIGNLRGLTLLSL 132 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l 132 (524)
.+|++|++.+|.+.+..| ..+..+++|+.||-
T Consensus 220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 168888888888876555 24678899998874
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=8.9e-07 Score=82.43 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=60.7
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCE--EEEEEeeccch------------------------HHHHHHHHHHHHHhcC
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTN--VAIKIFNLQLE------------------------RAFRSFDSECEVLRNV 487 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~--vavK~~~~~~~------------------------~~~~~~~~Ei~~l~~l 487 (524)
-|+..+.||+|+||.||+|.. .+|+. ||||.++.... .....+.+|++++.++
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 366778999999999999997 67888 99998754311 1123678999999999
Q ss_pred CCCCc--cceeEEEEcCCcceEEEcccCC-C----CHHHHH
Q 040301 488 CHRNL--IKILSSCSNPDFKALMWGRLLN-I----SITIIR 521 (524)
Q Consensus 488 ~H~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l 521 (524)
.|+++ ...+++ ...++||||+.+ | +|.++.
T Consensus 128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~ 164 (258)
T 1zth_A 128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELG 164 (258)
T ss_dssp HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHG
T ss_pred HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHh
Confidence 88864 344432 467999999942 4 676654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.17 E-value=9e-07 Score=75.99 Aligned_cols=84 Identities=10% Similarity=0.087 Sum_probs=40.7
Q ss_pred CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCC-CCCCCChhHhcC---cccccEEEeccCc-ccccCCc
Q 040301 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNP-LGGILPPVIGNF---SASFQNFYAFNCK-LKGNIPQ 119 (524)
Q Consensus 45 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~---~~~L~~L~l~~n~-l~~~~~~ 119 (524)
+|++||++++.+++... ..+.++++|++|+|++|. ++...-..+..+ ..+|++|++++|. ++...-.
T Consensus 62 ~L~~LDLs~~~Itd~GL--------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF--------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCCCCGGGG--------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCCccHHHH--------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 45555555555544322 334455556666666553 433222223322 1145555555553 4433333
Q ss_pred cccCCCCCCeEEcccCc
Q 040301 120 EIGNLRGLTLLSLFNND 136 (524)
Q Consensus 120 ~~~~l~~L~~L~l~~n~ 136 (524)
.+..+++|++|++++|.
T Consensus 134 ~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HGGGCTTCCEEEEESCT
T ss_pred HHhcCCCCCEEECCCCC
Confidence 44556666666666654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.15 E-value=6e-07 Score=77.08 Aligned_cols=85 Identities=7% Similarity=0.053 Sum_probs=68.5
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccc-cCCCCCCccccCccccCCCC----CCCCEEEccCCC-CCCCC
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNN-LTTESSLADQWSFLSALTNC----RHLKALSLGSNP-LGGIL 92 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~ 92 (524)
.-+|+.||+|+|.++...-..+..+++|++|+|++|. +++... ..++.+ ++|++|+|++|. |+...
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL--------~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL--------ERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH--------HHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH--------HHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4579999999999998877788999999999999995 766321 344443 379999999986 77655
Q ss_pred ChhHhcCcccccEEEeccCc
Q 040301 93 PPVIGNFSASFQNFYAFNCK 112 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~ 112 (524)
-..+..++ +|+.|++++|.
T Consensus 132 l~~L~~~~-~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFR-NLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCT-TCCEEEEESCT
T ss_pred HHHHhcCC-CCCEEECCCCC
Confidence 55677776 99999999985
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.5e-06 Score=81.82 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=48.4
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCC
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCH 489 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H 489 (524)
+......|...+.||+|+||.||+|+. .+|+.||||++.... ....+.|.+|+.+++.++|
T Consensus 73 ~~~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~ 137 (413)
T 3dzo_A 73 LGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG 137 (413)
T ss_dssp SSSCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred CCCCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence 334556788889999999999999995 578999999987332 2235678999999999987
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=97.82 E-value=1.9e-05 Score=76.98 Aligned_cols=91 Identities=8% Similarity=0.023 Sum_probs=60.8
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc-----------------hHH-----HHHHHHHHHHH
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL-----------------ERA-----FRSFDSECEVL 484 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~-----------------~~~-----~~~~~~Ei~~l 484 (524)
..+...-.-|++...||.|+||.||+|...+|+.||||.++... ... .-...+|...|
T Consensus 88 ~~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL 167 (397)
T 4gyi_A 88 HTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFM 167 (397)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 44444444488999999999999999998889999999875321 000 01124677788
Q ss_pred hcCCCCCccceeEEEEcCCcceEEEcccCCCCHHH
Q 040301 485 RNVCHRNLIKILSSCSNPDFKALMWGRLLNISITI 519 (524)
Q Consensus 485 ~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~ 519 (524)
.++.+..+.-..-+.. ...+|||||++|++|.+
T Consensus 168 ~rL~~~gv~vp~p~~~--~~~~LVME~i~G~~L~~ 200 (397)
T 4gyi_A 168 KALYEEGFPVPEPIAQ--SRHTIVMSLVDALPMRQ 200 (397)
T ss_dssp HHHHHTTCSCCCEEEE--ETTEEEEECCSCEEGGG
T ss_pred HHHHhcCCCCCeeeec--cCceEEEEecCCccHhh
Confidence 8886555432222222 23479999999988754
|
| >3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=68.05 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=70.4
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~ 509 (524)
....+|+.....+.|+.+.||++... ++.+++|............+.+|+++++.+. |..+.++++++...+..|+||
T Consensus 11 ~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~ 89 (263)
T 3tm0_A 11 KLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM 89 (263)
T ss_dssp HHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred HHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEE
Confidence 34456877778888888999999854 6789999987532222345888999998884 678889999999888999999
Q ss_pred cccCCCCHHHH
Q 040301 510 GRLLNISITII 520 (524)
Q Consensus 510 e~~~~gsL~~~ 520 (524)
||++|.++.+.
T Consensus 90 e~i~G~~l~~~ 100 (263)
T 3tm0_A 90 SEADGVLCSEE 100 (263)
T ss_dssp ECCSSEEHHHH
T ss_pred EecCCeehhhc
Confidence 99999998764
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=3.4e-05 Score=67.48 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=24.0
Q ss_pred ccccCCCEEEcccc-ccCCCCCCccccCccccCCCCCCCCEEEccCCCCCC
Q 040301 41 GNLRHLSSLLLTWN-NLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGG 90 (524)
Q Consensus 41 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 90 (524)
.+-+.|++|+|++| +|.+. |...+...+..-+.|+.|+|++|.+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~----ga~~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKE----RIRSLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHH----HHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred hcCCCccEEECCCCCCCCHH----HHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence 33456666666664 55432 111112344555666666666666653
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00011 Score=64.17 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=18.6
Q ss_pred hccCCCCCCEEEcCCCcCcccC----CcCccCCCCCCEEEcCCCcCc
Q 040301 216 SLWSLEYILMINLSSNSLNDSL----PSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 216 ~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~ 258 (524)
.+..-+.|+.|+|++|.+.+.- ...+..-..|++|+|+.|.|.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3344445555555555554321 112223344555555555543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00074 Score=55.01 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=47.2
Q ss_pred CEEEccCCccc-CCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 271 ETLSLASNQFQ-GPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 271 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|++++|++.+.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 36777888776 24565432 468999999999997777788889999999999999987654
|
| >1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00041 Score=64.06 Aligned_cols=84 Identities=10% Similarity=0.031 Sum_probs=61.2
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCC--ccceeEEEEcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN--LIKILSSCSNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~n--iv~l~~~~~~~~~~~lv~ 509 (524)
...++......+.|..+.||++...+|+.+++|...... ...+.+|+++++.+.+.+ +.+++++...++..++||
T Consensus 18 ~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~---~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~ 94 (264)
T 1nd4_A 18 RLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA---LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL 94 (264)
T ss_dssp TTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCT---TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred hcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCccc---chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEE
Confidence 334455433334556689999987777889999876532 245678999988885544 556888888888899999
Q ss_pred cccCCCCHH
Q 040301 510 GRLLNISIT 518 (524)
Q Consensus 510 e~~~~gsL~ 518 (524)
||++|.++.
T Consensus 95 e~i~G~~l~ 103 (264)
T 1nd4_A 95 GEVPGQDLL 103 (264)
T ss_dssp ECCSSEETT
T ss_pred EecCCcccC
Confidence 999998774
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00098 Score=54.28 Aligned_cols=57 Identities=28% Similarity=0.419 Sum_probs=45.6
Q ss_pred cEEEccCCccc-ccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCC
Q 040301 23 WVMDLSSNSFS-GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLG 89 (524)
Q Consensus 23 ~~Ldls~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 89 (524)
+.+|.++++++ ..+|..+. ++|++|+|++|+|+.++. ..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~--------~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPP--------GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCT--------TTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccCh--------hhhhhccccCEEEecCCCee
Confidence 47899999886 45665542 368999999999998875 67788889999999999875
|
| >3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.016 Score=56.19 Aligned_cols=78 Identities=8% Similarity=0.100 Sum_probs=56.0
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEee--ccc-hHHHHHHHHHHHHHhcCC--CCCccceeEEEEcC---CcceEEEc
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFN--LQL-ERAFRSFDSECEVLRNVC--HRNLIKILSSCSNP---DFKALMWG 510 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~~~---~~~~lv~e 510 (524)
.+.++.|.++.||+....+ ..+++|+.. ... ......+.+|+++++.+. +..+.++++++.+. +..|+|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 4578899999999988754 578888776 332 123456788999998886 45688999988776 34899999
Q ss_pred ccCCCCH
Q 040301 511 RLLNISI 517 (524)
Q Consensus 511 ~~~~gsL 517 (524)
|++|..+
T Consensus 122 ~v~G~~l 128 (359)
T 3dxp_A 122 FVSGRVL 128 (359)
T ss_dssp CCCCBCC
T ss_pred ecCCeec
Confidence 9998776
|
| >3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.028 Score=52.59 Aligned_cols=78 Identities=13% Similarity=0.015 Sum_probs=56.0
Q ss_pred ccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC---CCccceeEEEEcCCcceEEEccc
Q 040301 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH---RNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H---~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
...+..+|.|..+.||+.+..+|+.+.+|+-..........|.+|.+.|+.+.- --+.+.+++ +.-++||||+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e~l 92 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAMEWV 92 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEECC
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEEee
Confidence 444567899999999999999999999998754433333567889998887732 234455543 2357899999
Q ss_pred CCCCH
Q 040301 513 LNISI 517 (524)
Q Consensus 513 ~~gsL 517 (524)
+++..
T Consensus 93 ~~~~~ 97 (288)
T 3f7w_A 93 DERPP 97 (288)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 88754
|
| >3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.21 Score=47.13 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=59.7
Q ss_pred ccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC---CCCccceeEEEEcCCcceEEEcccCC
Q 040301 438 ECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC---HRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 438 ~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~---H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
....++.|.+..+|+... ++..+++|..... ....|.+|.+.|+.+. ...+.+.++++...+..++||||+++
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence 345788999999999886 4667888887643 2466888988888773 36688899888888889999999998
Q ss_pred CCH
Q 040301 515 ISI 517 (524)
Q Consensus 515 gsL 517 (524)
..+
T Consensus 116 ~~~ 118 (312)
T 3jr1_A 116 SKN 118 (312)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
|
| >2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.13 Score=50.39 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=48.8
Q ss_pred cCcccCCCCceEEEEEeC-CCCEEEEEEeeccch-------HHHHHHHHHHHHHhcCCC--CC-ccceeEEEEcCCcceE
Q 040301 439 CNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE-------RAFRSFDSECEVLRNVCH--RN-LIKILSSCSNPDFKAL 507 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~Ei~~l~~l~H--~n-iv~l~~~~~~~~~~~l 507 (524)
.+.+|.|.++.||++... +++.++||...+... .....+.+|.++++.+.. |. +.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 357899999999999753 467899998753211 112356778888887632 33 3455543 3556789
Q ss_pred EEcccCCC
Q 040301 508 MWGRLLNI 515 (524)
Q Consensus 508 v~e~~~~g 515 (524)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999864
|
| >4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.52 Score=43.14 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=56.8
Q ss_pred cccCCCCc-eEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 441 LLGTGSFG-SVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 441 ~ig~g~~g-~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
.+..|..+ .||+.... ++..+.+|.-+.. ...++.+|...|+.+. +--+.+.++++.+++..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 34445555 58987754 4567888876543 3456788999888773 33477888999988999999999999887
Q ss_pred HHHH
Q 040301 518 TIIR 521 (524)
Q Consensus 518 ~~~l 521 (524)
.+..
T Consensus 108 ~~~~ 111 (272)
T 4gkh_A 108 FQVL 111 (272)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6543
|
| >3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A* | Back alignment and structure |
|---|
Probab=87.41 E-value=0.87 Score=42.66 Aligned_cols=75 Identities=8% Similarity=0.012 Sum_probs=53.1
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCC---CccceeEEEE-cCCcceEEEcccCC
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHR---NLIKILSSCS-NPDFKALMWGRLLN 514 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~---niv~l~~~~~-~~~~~~lv~e~~~~ 514 (524)
...++.|....||+. +..+++|.-.. ......+.+|.++|+.+.+. .+.+.+.++. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 345677888889887 45677887422 23456788999999988653 3566776664 34557899999999
Q ss_pred CCHHH
Q 040301 515 ISITI 519 (524)
Q Consensus 515 gsL~~ 519 (524)
..+.+
T Consensus 98 ~~l~~ 102 (306)
T 3tdw_A 98 QILGE 102 (306)
T ss_dssp EECHH
T ss_pred eECch
Confidence 87764
|
| >3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A | Back alignment and structure |
|---|
Probab=85.50 E-value=0.12 Score=51.84 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=17.3
Q ss_pred cCcccCCCCceEEEEEeCC-CCEEEE------EEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 439 CNLLGTGSFGSVYKGTISD-WTNVAI------KIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
.+.+| ||.||+|.+.. ...||| |..+... ....+.|.+|..+++..+|||+++.+++...
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 34555 99999999843 357888 7665422 2334578899999999999999999887654
|
| >3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A* | Back alignment and structure |
|---|
Probab=82.61 E-value=0.35 Score=46.51 Aligned_cols=79 Identities=10% Similarity=-0.040 Sum_probs=52.9
Q ss_pred Ccc-cCCCCceEEEEEeC-------CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCC-C--CCccceeEEEEcC---
Q 040301 440 NLL-GTGSFGSVYKGTIS-------DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVC-H--RNLIKILSSCSNP--- 502 (524)
Q Consensus 440 ~~i-g~g~~g~v~~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~-H--~niv~l~~~~~~~--- 502 (524)
+.+ +.|....+|+.... ++..+++|...... ......+.+|+.+++.+. + -.+.++++++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 456 77888889988753 25678888765422 001235677888887773 2 3577788877655
Q ss_pred CcceEEEcccCCCCHH
Q 040301 503 DFKALMWGRLLNISIT 518 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~ 518 (524)
+..++||||++|..+.
T Consensus 106 g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPP 121 (357)
T ss_dssp SSCEEEEECCCCBCCC
T ss_pred CCceEEEEecCCCChh
Confidence 3468999999986653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 524 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 8e-18 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 9e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.001 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-04 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 0.002 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-17 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-08 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 3e-12 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 4e-12 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 5e-12 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 5e-12 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 1e-11 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 1e-11 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 4e-11 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 1e-10 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 1e-10 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 1e-10 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 2e-10 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 3e-10 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 4e-10 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 4e-10 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 4e-10 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 5e-10 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 7e-10 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 8e-10 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 2e-09 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 2e-09 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 3e-09 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 3e-09 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 3e-09 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 3e-09 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 4e-09 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 4e-09 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 4e-09 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 5e-09 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 5e-09 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 6e-09 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 7e-09 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 7e-09 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 8e-09 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 1e-08 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 2e-08 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 2e-08 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 4e-08 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 4e-08 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 4e-08 | |
| d1omwa3 | 364 | d.144.1.7 (A:186-549) G-protein coupled receptor k | 4e-08 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 6e-08 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 7e-08 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 8e-08 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 9e-08 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 1e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-04 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 1e-07 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 1e-07 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 2e-07 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 3e-07 | |
| d3blha1 | 318 | d.144.1.7 (A:8-325) Cell division protein kinase 9 | 4e-07 | |
| d1rdqe_ | 350 | d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni | 5e-07 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 5e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 1e-06 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 2e-06 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 3e-06 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 4e-06 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 4e-06 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 7e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-04 | |
| d1phka_ | 277 | d.144.1.7 (A:) gamma-subunit of glycogen phosphory | 2e-05 | |
| d1zara2 | 191 | d.144.1.9 (A:91-281) Rio2 serine protein kinase C- | 2e-05 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 2e-05 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 6e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-04 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 1e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.001 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.003 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.0 bits (201), Expect = 8e-18
Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 11/270 (4%)
Query: 76 RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNN 135
L L +N + I N + N K+ P L L L L N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 136 DLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLAS 195
L L++LR + + S+ L + ++ + K SG
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQG 148
Query: 196 LTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRN 255
+ L + + +T+ SL + +L N + ++++ L L L LS N
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 256 QLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG------KIP 309
+S + A +N +P + ++ + L NN+S P
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265
Query: 310 KSLETLSHLKQFNASHNRLEGKILVKGSFK 339
+ + N ++ + +F+
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.8 bits (177), Expect = 1e-14
Identities = 57/288 (19%), Positives = 98/288 (34%), Gaps = 43/288 (14%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
++DL +N + F NL++L +L+L N ++ S A L+ L L
Sbjct: 35 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP--------GAFAPLVKLERLYL 86
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
N L + + Q ++ L + ++ L N L +
Sbjct: 87 SKNQLKELPE----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--- 139
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
G +K + IR+ ++ IP L SL ELH
Sbjct: 140 -------------------GIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELH 177
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIST 263
L NK+T +SL L + + LS NS++ ++ LR L L+ N+L
Sbjct: 178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 237
Query: 264 IGALVDLETLSLASNQFQG------PIPESVGSLISLESLDLSGNNLS 305
+ ++ + L +N P S + L N +
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.1 bits (165), Expect = 3e-13
Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 3/206 (1%)
Query: 151 LRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLT 210
L L+ N + D +LK ++ + L NK+S P A L L L+L N+L
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 211 SSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDL 270
+L+ + + + S+ + + + V+ + + + L
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 271 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330
+ +A IP+ G SL L L GN ++ SL+ L++L + S N +
Sbjct: 153 SYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 331 KILVKGSFKNFSAESFFGNYALCGLP 356
+ E N L +P
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVP 235
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.8 bits (164), Expect = 4e-13
Identities = 48/233 (20%), Positives = 82/233 (35%), Gaps = 5/233 (2%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
+P+++ LL L NN + LK L L L N + P L +
Sbjct: 25 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82
Query: 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236
+ L+ N+L +L LR K+ S+ + L + + + S
Sbjct: 83 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI- 141
Query: 237 LPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLES 296
Q +K L + ++ ++ G L L L N+ S+ L +L
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199
Query: 297 LDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGN 349
L LS N++S SL HL++ + ++N+L K N
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 82.7 bits (203), Expect = 9e-18
Identities = 71/331 (21%), Positives = 118/331 (35%), Gaps = 45/331 (13%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
++ S+N + P NL L +L+ N + + LA+ + + +
Sbjct: 70 QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127
Query: 84 GSNPLGGILPPVIGN----------------------------FSASFQNFYAFNCKLKG 115
N + N + K
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187
Query: 116 NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLM 175
+ + L L L NN ++ + L LSL N L+ L L +
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNL 243
Query: 176 YGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND 235
+ L N++S P L+ LT L EL LG+N++++ P L L + + L+ N L D
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 299
Query: 236 SLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLE 295
S I LK L L L N +S IS + +L L+ L A+N+ S+ +L ++
Sbjct: 300 --ISPISNLKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNIN 354
Query: 296 SLDLSGNNLSGKIPKSLETLSHLKQFNASHN 326
L N +S P L L+ + Q +
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 55.4 bits (132), Expect = 7e-09
Identities = 60/337 (17%), Positives = 121/337 (35%), Gaps = 53/337 (15%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
L + + + + +L +++L + + + + +L ++ +
Sbjct: 28 VLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS----------IDGVEYLNNLTQINFSN 75
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
N L I P + N + N + NL GLTL + D++ + T
Sbjct: 76 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHL------------KLMYGIRLTGNKLSGHIPPCL 193
+L ++ + + L RL + L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 194 ASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253
A LT+L L +N+++ P + + + ++L+ N L D + +L L LDL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249
Query: 254 RNQLSGDISTIGALVDLETLSLASNQFQGPIP--------------------ESVGSLIS 293
NQ+S ++ + L L L L +NQ P + +L +
Sbjct: 250 NNQISN-LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308
Query: 294 LESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330
L L L NN+S P + +L+ L++ ++N++
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 42.7 bits (99), Expect = 8e-05
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 3 WRWGNHSPHGDSPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSL 62
+ SP + + L N+ S P +L L L N ++
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD---- 343
Query: 63 ADQWSFLSALTNCRHLKALSLGSNPLGGILP 93
+S+L N ++ LS G N + + P
Sbjct: 344 ------VSSLANLTNINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 0.001
Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 20/225 (8%)
Query: 121 IGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIP------YDLCHLKL 174
+ L LT ++ NN L + L +L + + N + P L
Sbjct: 62 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119
Query: 175 MYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234
+ K ++ S ++ ++ S + S + + + +
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179
Query: 235 DSLPSNIQT-------LKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPES 287
+ SN + L L L + NQ+S I+ +G L +L+ LSL NQ + +
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISD-ITPLGILTNLDELSLNGNQLKD--IGT 236
Query: 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
+ SL +L LDL+ N +S P L L+ L + N++
Sbjct: 237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 279
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.0 bits (198), Expect = 1e-17
Identities = 56/263 (21%), Positives = 96/263 (36%), Gaps = 11/263 (4%)
Query: 44 RHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASF 103
+ L N ++ + ++ CR+L L L SN L I +
Sbjct: 32 AASQRIFLHGNRISHVPA--------ASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 104 QNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG 163
Q + N +L+ P L L L L L L L+ L L+ N L+
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 164 SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYI 223
L + + L GN++S L SL L L N++ P + L +
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203
Query: 224 LMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGP 283
+ + L +N+L+ + L+ L+ L L+ N D L+ +S++
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263
Query: 284 IPESVGSLISLESLDLSGNNLSG 306
+P+ L + L+ N+L G
Sbjct: 264 LPQ---RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 5e-05
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 2/155 (1%)
Query: 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSL 237
I L GN++S + +L L L SN L ++ L + ++LS N+ S+
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 238 -PSNIQTLKVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLE 295
P+ L L L L R L L L+ L L N Q ++ L +L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 296 SLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330
L L GN +S ++ L L + NR+
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 32/133 (24%), Positives = 40/133 (30%), Gaps = 21/133 (15%)
Query: 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLA----------------DQW 66
+ L N S F L L LLL N + A
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 67 SFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRG 126
AL R L+ L L NP A Q F + ++ ++PQ L G
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQ---RLAG 270
Query: 127 LTLLSLFNNDLNG 139
L L NDL G
Sbjct: 271 RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.002
Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 5/165 (3%)
Query: 170 CHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLS 229
C+ + L +P + + + + L N+++ +S + + ++ L
Sbjct: 8 CYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLH 64
Query: 230 SNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIS--TIGALVDLETLSLASNQFQGPIPES 287
SN L + L +L LDLS N + T L L TL L Q P
Sbjct: 65 SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124
Query: 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
L +L+ L L N L + L +L NR+
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 79.8 bits (195), Expect = 5e-17
Identities = 72/296 (24%), Positives = 120/296 (40%), Gaps = 29/296 (9%)
Query: 70 SALTNCRHLKALSLGSNPLGGI--LPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGL 127
T + L L L +P + N + L G IP I L L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 128 TLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187
L + + +++G I + ++K L L YN L G++P + L + GI GN++SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247
IP S + L S + ++ + ++LS N L + K
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 248 RVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGK 307
+ + L++N L+ D+ +G +L L L +N+ G +P+ + L L SL++S NNL G+
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 308 IPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPC 363
IP+ G+ + F ++ N LCG P +P C
Sbjct: 284 IPQG------------------------GNLQRFDVSAYANNKCLCGSP---LPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 69.0 bits (167), Expect = 2e-13
Identities = 48/264 (18%), Positives = 91/264 (34%), Gaps = 13/264 (4%)
Query: 26 DLSSNSFSG--HIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
DLS + IP++ NL +L+ L + N A+ L L +
Sbjct: 56 DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-------GPIPPAIAKLTQLHYLYI 108
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
+ G +P + +++N G +P I +L L ++ N ++G I
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+ G +L N L + L +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIST 263
+ + + + + ++L +N + +LP + LK L L++S N L G+I
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 264 IGALVDLETLSLASNQFQ--GPIP 285
G L + + A+N+ P+P
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLP 310
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 53.2 bits (126), Expect = 3e-08
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 1 MGWRWGNHSPHGDSPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTES 60
N + +DL +N G +P L+ L SL +++NNL E
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE- 283
Query: 61 SLADQWSFLSALTNCRHLKALSLGSNPL--GGILPP 94
+ N + + +N G LP
Sbjct: 284 --------IPQGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.3 bits (156), Expect = 3e-12
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
+ LGTG FG V G +VAIK+ + F E +V+ N+ H L+
Sbjct: 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLV 62
Query: 494 KILSSCSNPDFKALMW 509
++ C+ ++
Sbjct: 63 QLYGVCTKQRPIFIIT 78
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.8 bits (157), Expect = 4e-12
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 425 SYLDIQRATDEFNEC---------NLLGTGSFGSVYKGTISDWTN----VAIKIFNLQL- 470
++ D A EF + ++G G FG V G + VAIK
Sbjct: 8 TFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT 67
Query: 471 ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508
E+ R F SE ++ H N+I + + ++
Sbjct: 68 EKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMII 105
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.3 bits (156), Expect = 5e-12
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
+ LG G FG V+ G + T VA+K + +F +E +++ + H+ L+
Sbjct: 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLV 71
Query: 494 KILSSCSNPDFKALM 508
++ + + +
Sbjct: 72 RLYAVVTQEPIYIIT 86
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.9 bits (155), Expect = 5e-12
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
E +G+G FG V+ G + VAIK F E EV+ + H L+
Sbjct: 5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHPKLV 63
Query: 494 KILSSCSNPDFKALMW 509
++ C L++
Sbjct: 64 QLYGVCLEQAPICLVF 79
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.2 bits (153), Expect = 1e-11
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
+ LG G FG V+ GT + T VAIK + +F E +V++ + H L+
Sbjct: 17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 75
Query: 494 KILSSCSNPDFKALM 508
++ + S +
Sbjct: 76 QLYAVVSEEPIYIVT 90
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.5 bits (154), Expect = 1e-11
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 429 IQRATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRS-FDSECEVLRN 486
++ D+F + + LG G+ G V+K + +A K+ +L+++ A R+ E +VL
Sbjct: 1 MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60
Query: 487 VCHRNLIKILSSCSNPDFKAL 507
++ + + ++
Sbjct: 61 CNSPYIVGFYGAFYSDGEISI 81
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (148), Expect = 4e-11
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIFNLQL---ERAFRSFDSECEVLRN 486
+ LG GSFG V +G + VA+K + A F E + +
Sbjct: 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67
Query: 487 VCHRNLIKILSSCSNPDFKALM 508
+ HRNLI++ P K +
Sbjct: 68 LDHRNLIRLYGVVLTPPMKMVT 89
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (144), Expect = 1e-10
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
E +G G FG V G VA+K ++ + ++F +E V+ + H NL+
Sbjct: 7 KELKLLQTIGKGEFGDVMLGDYRG-NKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLV 63
Query: 494 KILSSCSNPD 503
++L
Sbjct: 64 QLLGVIVEEK 73
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.0 bits (145), Expect = 1e-10
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRN 491
+ +G+GSFG+VYKG +VA+K+ N+ + ++F +E VLR H N
Sbjct: 8 GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65
Query: 492 LIKILSSCSNPDFKALM 508
++ + + P +
Sbjct: 66 ILLFMGYSTAPQLAIVT 82
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (144), Expect = 1e-10
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTN-----VAIKIFNLQL-ERAFRSFDSECEVLRNV 487
++G G FG VYKG + + VAIK E+ F E ++
Sbjct: 7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66
Query: 488 CHRNLIKILSSCSNPDFKALMW 509
H N+I++ S ++
Sbjct: 67 SHHNIIRLEGVISKYKPMMIIT 88
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (144), Expect = 2e-10
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 433 TDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN 491
++ +G G+ G+VY ++ VAI+ NLQ + +E V+R + N
Sbjct: 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78
Query: 492 LIKILSSCSNPDFKAL----MWGRLL 513
++ L S D + + G L
Sbjct: 79 IVNYLDSYLVGDELWVVMEYLAGGSL 104
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.6 bits (141), Expect = 3e-10
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDW-TNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNL 492
+ + LG G +G VY+G + VA+K F E V++ + H NL
Sbjct: 17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNL 75
Query: 493 IKILSSCSNPDFKALMW 509
+++L C+ ++
Sbjct: 76 VQLLGVCTREPPFYIIT 92
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.6 bits (141), Expect = 4e-10
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIFNLQLERAFRS-FDSE 480
++ I ++ + ++G G FG VY GT+ D A+K N + S F +E
Sbjct: 19 HVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTE 78
Query: 481 CEVLRNVCHRNLIKILSSCSNPDFKALM 508
++++ H N++ +L C + L+
Sbjct: 79 GIIMKDFSHPNVLSLLGICLRSEGSPLV 106
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 58.4 bits (140), Expect = 4e-10
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRN 491
++++ +G G++G VYK + A+K L+ E + E +L+ + H N
Sbjct: 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61
Query: 492 LIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
++K+ L++ L ++
Sbjct: 62 IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVC 93
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.6 bits (141), Expect = 4e-10
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISD-----WTNVAIKIFNLQL-ERAFRSFDSE 480
L I + T+ F + +LG+G+FG+VYKG VAIK +A + E
Sbjct: 3 LRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDE 61
Query: 481 CEVLRNVCHRNLIKILSSCSNPDFKALM 508
V+ +V + ++ ++L C + +
Sbjct: 62 AYVMASVDNPHVCRLLGICLTSTVQLIT 89
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.5 bits (141), Expect = 5e-10
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 433 TDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNL---QLERAFRSFDSECEVLRNVC 488
F++ +G GSFG+VY + + VAIK + Q ++ E L+ +
Sbjct: 14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73
Query: 489 HRNLIKILSSCSNPDFKALM 508
H N I+ L+
Sbjct: 74 HPNTIQYRGCYLREHTAWLV 93
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (140), Expect = 7e-10
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 426 YLDIQR---ATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSEC 481
Y + R D + LG G+FG VYK A K+ + + E + E
Sbjct: 1 YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEI 60
Query: 482 EVLRNVCHRNLIKILSSCSNPDFKAL----MWGRLLNISITIIRRHL 524
++L + H N++K+L + + + G ++ + + R L
Sbjct: 61 DILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPL 107
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (139), Expect = 8e-10
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 430 QRATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL---ERAFRSFDSECEVLR 485
++ ++F +LG GSF +V ++ AIKI + E E +V+
Sbjct: 4 KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 63
Query: 486 NVCHRNLIKILSSCSNPD 503
+ H +K+ + + +
Sbjct: 64 RLDHPFFVKLYFTFQDDE 81
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 57.0 bits (137), Expect = 2e-09
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNL 492
D ++ LG+G+FG V++ + K N + +E ++ + H L
Sbjct: 29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88
Query: 493 IKILSSCSNPDF 504
I + + +
Sbjct: 89 INLHDAFEDKYE 100
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (134), Expect = 2e-09
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNL-QLERAFRSFDSECEVLRNVCHRN 491
++++ LG G++G V VA+KI ++ + + E + + + H N
Sbjct: 5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64
Query: 492 LIKILSSCSNPDFKAL 507
++K + + L
Sbjct: 65 VVKFYGHRREGNIQYL 80
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (134), Expect = 3e-09
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN---VAIKIFNLQL--ERAFRSFDSE 480
YLD + T E E LG+G+FG+V KG VA+KI + +E
Sbjct: 2 YLDRKLLTLEDKE---LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAE 58
Query: 481 CEVLRNVCHRNLIKILSSCSNPDFKALM 508
V++ + + +++++ C + +M
Sbjct: 59 ANVMQQLDNPYIVRMIGICEAESWMLVM 86
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 3e-09
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
+G G FG V++G VA+KIF+ + ER++ ++E + H N++ +++ +
Sbjct: 11 IGKGRFGEVWRGKWRG-EEVAVKIFSSREERSWF-REAEIYQTVMLRHENILGFIAADNK 68
Query: 502 PD 503
+
Sbjct: 69 DN 70
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.8 bits (134), Expect = 3e-09
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 421 WRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQ-LERAFRSFD 478
W++ DI+ D ++ ++LGTG+F V VAIK + LE S +
Sbjct: 1 WKQAE--DIR---DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSME 55
Query: 479 SECEVLRNVCHRNLIKILSSCSNPD 503
+E VL + H N++ + +
Sbjct: 56 NEIAVLHKIKHPNIVALDDIYESGG 80
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 55.5 bits (133), Expect = 3e-09
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 433 TDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVC 488
+D + +LG G V+ + +VA+K+ L + F E + +
Sbjct: 6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65
Query: 489 HRNLIKILSSCSNPD 503
H ++ + +
Sbjct: 66 HPAIVAVYDTGEAET 80
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 56.2 bits (135), Expect = 4e-09
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNL 492
D ++ LGTG+FG V++ T + N A K E + E + + + H L
Sbjct: 26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85
Query: 493 IKILSSCSNPD 503
+ + + + +
Sbjct: 86 VNLHDAFEDDN 96
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 4e-09
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 429 IQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIFNLQLERAFRS-FDSECEV 483
IQR + +G G FG V++G N VAIK + R F E
Sbjct: 4 IQR--ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALT 61
Query: 484 LRNVCHRNLIKILSSCSNPDFKALM 508
+R H +++K++ + +M
Sbjct: 62 MRQFDHPHIVKLIGVITENPVWIIM 86
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 4e-09
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 433 TDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFN-LQLERAFRSFDSECEVLRNVCHR 490
+ + +G G++G V + VAIK + + + + E ++L H
Sbjct: 7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66
Query: 491 NLIKILSSCSNPDFK 505
N+I I P +
Sbjct: 67 NIIGINDIIRAPTIE 81
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.0 bits (132), Expect = 5e-09
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHR 490
+++ +GTGS+G K SD + K + E + SE +LR + H
Sbjct: 4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 63
Query: 491 NLIKILSSCSNPDFKALM 508
N+++ + L
Sbjct: 64 NIVRYYDRIIDRTNTTLY 81
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.3 bits (132), Expect = 5e-09
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 434 DEFNECNLLGTGSFGSVYKGT------ISDWTNVAIKIFNL-QLERAFRSFDSECEVLRN 486
++ LG GSFG VY+G T VAIK N R F +E V++
Sbjct: 20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79
Query: 487 VCHRNLIKILSSCSNPDFKALMW 509
+++++L S ++
Sbjct: 80 FNCHHVVRLLGVVSQGQPTLVIM 102
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 6e-09
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISD---WTNVAIKIFNLQLER-AFRSFDSECEVLRNVC- 488
++ +++G G+FG V K I + AIK + R F E EVL +
Sbjct: 10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69
Query: 489 HRNLIKILSSCSNPDFKALMW 509
H N+I +L +C + + L
Sbjct: 70 HPNIINLLGACEHRGYLYLAI 90
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.1 bits (132), Expect = 7e-09
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCH 489
+F LGTGSFG V+ + A+K+ ++ + + E +L V H
Sbjct: 4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63
Query: 490 RNLIKILSSCSNPDF 504
+I++ + +
Sbjct: 64 PFIIRMWGTFQDAQQ 78
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (131), Expect = 7e-09
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 442 LGTGSFGSVYKGTI---SDWTNVAIKIFNLQLERAFR-SFDSECEVLRNVCHRNLIKILS 497
LG G+FGSV +G +VAIK+ E+A E +++ + + +++++
Sbjct: 17 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 76
Query: 498 SCSNPDF 504
C
Sbjct: 77 VCQAEAL 83
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (130), Expect = 8e-09
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFN---LQLERAFRSFDSECEVLRNVCH 489
++F LG G FG+VY +A+K+ L+ E E+ ++ H
Sbjct: 6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65
Query: 490 RNLIKILSSCSNPDFKALMW 509
N++++ + L+
Sbjct: 66 PNILRLYGYFHDATRVYLIL 85
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 1e-08
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHR 490
+ F + +G G++G VYK VA+K L E + E +L+ + H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 491 NLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
N++K+L + L++ L +
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQDLKKFMDAS 94
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (128), Expect = 2e-08
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 436 FNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ VAIK + E +++R + H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF----KNRELQIMRKLDHCNIVR 77
Query: 495 ILSSCSNPD 503
+ +
Sbjct: 78 LRYFFYSSG 86
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 2e-08
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 433 TDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCH 489
+ + + +G+G++GSV VA+K + + E +L+++ H
Sbjct: 17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKH 76
Query: 490 RNLIKILSSCSNPD 503
N+I +L +
Sbjct: 77 ENVIGLLDVFTPAR 90
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.5 bits (125), Expect = 4e-08
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 425 SYLDIQRATDEFNECNLLGTGSFGSVYKGT------ISDWTNVAIKIFNLQLERAFRS-F 477
L ++ + +G G+FG V++ +T VA+K+ + ++ F
Sbjct: 4 KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADF 63
Query: 478 DSECEVLRNVCHRNLIKILSSCSNPDFKALM 508
E ++ + N++K+L C+ L+
Sbjct: 64 QREAALMAEFDNPNIVKLLGVCAVGKPMCLL 94
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 4e-08
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTN------VAIKIFNLQLERAFR-SFDSECEVLRN 486
+ + LG G+FG V + T VA+K+ R + SE +VL
Sbjct: 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82
Query: 487 VC-HRNLIKILSSCSNPDFKALM 508
+ H N++ +L +C+ ++
Sbjct: 83 LGNHMNIVNLLGACTIGGPTLVI 105
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 4e-08
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCH 489
++F+ LLG G+FG V + A+KI ++ + +E VL+N H
Sbjct: 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64
Query: 490 RNLIKILSSCSNPDF 504
L + + D
Sbjct: 65 PFLTALKYAFQTHDR 79
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.8 bits (126), Expect = 4e-08
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNL------QLERAFRSFDSECEVLRN 486
++F+ ++G G FG VY A+K + Q E + ++
Sbjct: 4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63
Query: 487 VCHRNLIKILSSCSNPD 503
++ + + PD
Sbjct: 64 GDCPFIVCMSYAFHTPD 80
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 6e-08
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 440 NLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL-----ERAFRSFDSECEVLRNVCHRNLI 493
+ LG G F +VYK + VAIK L + R+ E ++L+ + H N+I
Sbjct: 4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63
Query: 494 KILSSCSNPDFKALMW 509
+L + + +L++
Sbjct: 64 GLLDAFGHKSNISLVF 79
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 7e-08
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL------ERAFRSFDSECEVLRN 486
D ++ LG+G F V K S A K + + + E +L+
Sbjct: 10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69
Query: 487 VCHRNLIKILSSCSNPDF 504
+ H N+I + N
Sbjct: 70 IQHPNVITLHEVYENKTD 87
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 8e-08
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 428 DIQRATDEFNE----CNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSE 480
++ + E +G+G++G+V VAIK E + E
Sbjct: 8 EVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRE 67
Query: 481 CEVLRNVCHRNLIKILSSCSNPD 503
+L+++ H N+I +L + +
Sbjct: 68 LRLLKHMRHENVIGLLDVFTPDE 90
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (122), Expect = 9e-08
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHR 490
++ + +G G++G+V+K VA+K L E S E +L+ + H+
Sbjct: 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61
Query: 491 NLIKILSSCSNPDFKALMW 509
N++++ + L++
Sbjct: 62 NIVRLHDVLHSDKKLTLVF 80
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (122), Expect = 1e-07
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTN------VAIKIFNLQLERAFR-SFDSECEVLRN 486
+ +LG+G+FG V T + VA+K+ + + + R + SE +++
Sbjct: 37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96
Query: 487 VC-HRNLIKILSSCSNPDFKAL 507
+ H N++ +L +C+ L
Sbjct: 97 LGSHENIVNLLGACTLSGPIYL 118
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.2 bits (114), Expect = 1e-07
Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 28/122 (22%)
Query: 225 MINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDL-------------- 270
+++L+ L ++ +++ L ++ LDLS N+L + AL L
Sbjct: 2 VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 271 --------ETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSGK---IPKSLETLSHL 318
+ L L +N+ Q + + S L L+L GN+L + + E L +
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119
Query: 319 KQ 320
Sbjct: 120 SS 121
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.0 bits (98), Expect = 2e-05
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPS--SLWSLEYILMINLSSNSLNDSL 237
L L+ + L L + L L N+L + P+ +L LE + + + +++
Sbjct: 5 LAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 238 PSNIQTLKVLRVLDLSRNQLSG--DISTIGALVDLETLSLASNQFQGPIPESVGSLISL 294
+ L L N+L I + + L L+L N L +
Sbjct: 63 NLPRL-----QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.2 bits (96), Expect = 3e-05
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 25/107 (23%)
Query: 248 RVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISL------------- 294
RVL L+ L+ + + L+ + L L+ N+ + P ++ +L L
Sbjct: 1 RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58
Query: 295 ---------ESLDLSGNNL-SGKIPKSLETLSHLKQFNASHNRLEGK 331
+ L L N L + L + L N N L +
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 7e-04
Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
+ + L +T L L +N L P + L+ L L N LE +
Sbjct: 12 VLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVDGVANLPR--LQ 68
Query: 177 GIRLTGNKL-SGHIPPCLASLTSLRELHLGSNKLT------SSIPSSLWSLEYIL 224
+ L N+L L S L L+L N L + L S+ IL
Sbjct: 69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (122), Expect = 1e-07
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNL 492
+++ LG G FG V++ S K ++ E +L HRN+
Sbjct: 5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVL-VKKEISILNIARHRNI 63
Query: 493 IKILSSCSNPDFKALMW 509
+ + S + + +++
Sbjct: 64 LHLHESFESMEELVMIF 80
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 1e-07
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 429 IQRATDEFNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQL--ERAFRSFDSECEVL 484
+ RA ++ +G G++G V+K VA+K +Q E S E VL
Sbjct: 2 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 61
Query: 485 R---NVCHRNLIKILSSCSNPDFK 505
R H N++++ C+
Sbjct: 62 RHLETFEHPNVVRLFDVCTVSRTD 85
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 50.6 bits (120), Expect = 2e-07
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRN 491
D++ LG G + V++ I++ V +KI ++ + E ++L N+ N
Sbjct: 35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIK---REIKILENLRGGPN 91
Query: 492 LIKILSSCSNPDFKALM 508
+I + +P +
Sbjct: 92 IITLADIVKDPVSRTPA 108
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.5 bits (117), Expect = 3e-07
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 431 RATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH 489
R + + +G+GSFG +Y GT I+ VAIK+ ++ + E ++ + +
Sbjct: 4 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQG 61
Query: 490 RNLIKILSSC 499
I + C
Sbjct: 62 GVGIPTIRWC 71
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (117), Expect = 4e-07
Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 431 RATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV 487
++ + +G G+FG V+K VA+K ++ E + E ++L+ +
Sbjct: 7 DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL 66
Query: 488 CHRNLIKILSSCSNPDFKALMWGRLLNI 515
H N++ ++ C + +
Sbjct: 67 KHENVVNLIEICRTKASPYNRCKGSIYL 94
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.4 bits (117), Expect = 5e-07
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCH 489
D+F+ LGTGSFG V + A+KI + Q + +E +L+ V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 490 RNLIKILSSCSNPDF 504
L+K+ S +
Sbjct: 101 PFLVKLEFSFKDNSN 115
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 5e-07
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFN---LQLERAFRSFDSECEVLRNVC- 488
++F +LG GSFG V+ AIK + ++ E VL
Sbjct: 2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61
Query: 489 HRNLIKILSSCSNPDFKALM 508
H L + + + +
Sbjct: 62 HPFLTHMFCTFQTKENLFFV 81
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 48.7 bits (114), Expect = 8e-07
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 170 CHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLS 229
L + N S I SL EL++ +NKL +P+ LE + S
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIAS 312
Query: 230 SNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDL 270
N L +P Q LK L + N L ++ DL
Sbjct: 313 FNHLA-EVPELPQNLK---QLHVEYNPLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.9 bits (99), Expect = 5e-05
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 132 LFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP 191
+ N + I L L++ N L +P L+ + + N L+ +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPE 321
Query: 192 CLASLTSLRELHLGSNKLTS--SIPSSLWSL 220
+L++LH+ N L IP S+ L
Sbjct: 322 ---LPQNLKQLHVEYNPLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.7 bits (88), Expect = 0.001
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 270 LETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
LE L++++N+ +P L E L S N+L+ ++P E +LKQ + +N L
Sbjct: 286 LEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVP---ELPQNLKQLHVEYNPLR 337
Query: 330 G 330
Sbjct: 338 E 338
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (114), Expect = 1e-06
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 442 LGTGSFGSVYKGTISDWTN-VAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G GSF +VYKG ++ T VA + + + F E E+L+ + H N+++ S
Sbjct: 17 IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDS 76
Query: 499 CSNPD 503
+
Sbjct: 77 WESTV 81
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHR 490
+ +G+G+ G V NVAIK + + + E +++ V H+
Sbjct: 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK 76
Query: 491 NLIKILSSCSNPD 503
N+I +L+ +
Sbjct: 77 NIISLLNVFTPQK 89
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 2e-06
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 434 DEFNECNLLGTGSFGSVYKGT--------ISDWTNVAIKIFNLQL-ERAFRSFDSECEVL 484
D LG G+FG V + T VA+K+ E+ SE E++
Sbjct: 13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72
Query: 485 RNVC-HRNLIKILSSCSNPDFKALM 508
+ + H+N+I +L +C+ ++
Sbjct: 73 KMIGKHKNIINLLGACTQDGPLYVI 97
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (110), Expect = 3e-06
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 247 LRVLDLSRNQLSGD--ISTIGALVDLETLSLASNQFQG----PIPESVGSLISLESLDLS 300
++ LD+ +LS + L + + L I ++ +L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 301 GNNLSGKIPKSL 312
N L +
Sbjct: 64 SNELGDVGVHCV 75
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 3e-05
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 238 PSNIQTLKVLRVLDLSRNQLSGD-----ISTIGALVDLETLSLASNQFQGPIPESVGSLI 292
Q VLRVL L+ +S +T+ A L L L++N + +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 293 -----SLESLDLSGNNLSGKIPKSLETL 315
LE L L S ++ L+ L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 5e-05
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 226 INLSSNSLNDS-LPSNIQTLKVLRVLDLSRNQLSGDI-----STIGALVDLETLSLASNQ 279
+++ L+D+ + L+ +V+ L L+ S + L L+L SN+
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 280 FQGPIPESVGSLI-----SLESLDLSGNN 303
V + ++ L L
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 2e-04
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 198 SLRELHLGSNKLTSSIPSSLWS-LEYILMINLSSNSLND----SLPSNIQTLKVLRVLDL 252
++ L + +L+ + + L L+ ++ L L + + S ++ L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 253 SRNQLSGD 260
N+L
Sbjct: 63 RSNELGDV 70
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 2e-04
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 25 MDLSSNSFS-GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
+D+ S L+ + L LT SAL L L+L
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD----ISSALRVNPALAELNL 62
Query: 84 GSNPLGGILPPVIGN 98
SN LG + +
Sbjct: 63 RSNELGDVGVHCVLQ 77
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.001
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 151 LRGLSLKYNNLEGSIPYDLC-HLKLMYGIRLTGNKLSG----HIPPCLASLTSLRELHLG 205
++ L ++ L + +L L+ +RL L+ I L +L EL+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLND 235
SN+L + + SL +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.003
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 270 LETLSLASNQFQG----PIPESVGSLISLESLDLSGNNLSGKIPKSL-----ETLSHLKQ 320
L L LA + ++ + SL LDLS N L L + L+Q
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 321 FNASHNRLEGKI 332
++
Sbjct: 431 LVLYDIYWSEEM 442
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.0 bits (110), Expect = 3e-06
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC 499
LG G F +V+ + + T+VA+KI + + + E ++L+ V + K S
Sbjct: 20 KLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMG 78
Query: 500 SNPDFKALMWG 510
+N K L
Sbjct: 79 ANHILKLLDHF 89
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 4e-06
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 434 DEFNECNLLGTGSFGSVYKGT------ISDWTNVAIKIFNL-QLERAFRSFDSECEVLRN 486
D LG G+FG V + + VA+K+ R+ SE ++L +
Sbjct: 13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72
Query: 487 VCHRNLIKILSSCSNPDFKALM 508
+ H + L LM
Sbjct: 73 IGHHLNVVNLLGACTKPGGPLM 94
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (109), Expect = 4e-06
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRS------FDSECEVLRNV--CHRN 491
LLG+G FGSVY G +SD VAIK + E +L+ V
Sbjct: 11 LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70
Query: 492 LIKILSSCSNPDFKALMW 509
+I++L PD L+
Sbjct: 71 VIRLLDWFERPDSFVLIL 88
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 7e-06
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 434 DEFNECNLLGTGSFGSVYKG--TISDWTN--VAIKIFN----LQLERAFRSFDSECEVLR 485
+ F +LGTG++G V+ T A+K+ +Q + +E +VL
Sbjct: 24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83
Query: 486 NVCHRNLIKILSSCSNPDFKALMW 509
++ + L + K +
Sbjct: 84 HIRQSPFLVTLHYAFQTETKLHLI 107
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 248 RVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGK 307
+ LDL+ L D++ + + P+ E S ++ +DLS + +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVS 61
Query: 308 -IPKSLETLSHLKQFNASHNRLEGKIL 333
+ L S L+ + RL I+
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIV 88
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 6e-05
Identities = 45/296 (15%), Positives = 88/296 (29%), Gaps = 49/296 (16%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLG 84
+DL+ + P+ G L + + LA+ +S ++ + L
Sbjct: 5 LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-------VQHMDLS 54
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
++ + I + + QN +L I + L L+L
Sbjct: 55 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC--------- 105
Query: 145 MGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204
G S S L L L + T + + ++T L
Sbjct: 106 -------SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158
Query: 205 GSNKLTSSIPSSLWSLEYILMINLSSNSL-NDSLPSNIQTLKVLRVLDLSRNQLSGDIST 263
N S + + + ++ ++LS + + + L L+ L LSR
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC-------- 210
Query: 264 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLK 319
+G + +L++L + G G + E L HL+
Sbjct: 211 --------------YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 1e-05
Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 23/186 (12%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDL------- 169
+P ++ + T+L L N L T+ +L L+L L
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82
Query: 170 --------------CHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPS 215
L + + ++ N+L+ L L L+EL+L N+L + P
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 216 SLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSL 275
L + ++L++N+L + + L+ L L L N L L L
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 276 ASNQFQ 281
N +
Sbjct: 203 HGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 36/186 (19%), Positives = 49/186 (26%), Gaps = 13/186 (6%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSL 83
++ LS N T L+ L L LT L L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL----QVDGTLPVLGTLDLSHNQLQ 90
Query: 84 GSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP 143
+G + +L + L L L L N+L
Sbjct: 91 SLPL--------LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 144 TMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203
+ +L LSL NNL L L+ + + L N L IP L
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201
Query: 204 LGSNKL 209
L N
Sbjct: 202 LHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 6/209 (2%)
Query: 120 EIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179
E+ + ++ +L + P + K L L N L L + +
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPS 239
L +L+ + +L + + +L +L + + SL
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 240 NIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 299
+ L+ L + L + T ++ +L+ +N + L +L++L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA--NNNLTELPAGLLNGLENLDTLLL 179
Query: 300 SGNNLSGKIPKSLETLSHLKQFNASHNRL 328
N+L IPK L N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 34/185 (18%), Positives = 59/185 (31%), Gaps = 5/185 (2%)
Query: 76 RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNN 135
+ L L N L + ++ N ++ + ++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYT----RLTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86
Query: 136 DLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLAS 195
+ ++ L L L + +N L L L + + L GN+L P L
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 196 LTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRN 255
L +L L +N LT L LE + + L NS ++P +L L N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205
Query: 256 QLSGD 260
+
Sbjct: 206 PWLCN 210
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 44.3 bits (104), Expect = 2e-05
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 434 DEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNL---------QLERAFRSFDSECEV 483
+ + +LG G V + A+KI ++ +++ + E ++
Sbjct: 3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62
Query: 484 LRNV-CHRNLIKILSSCSNPDF 504
LR V H N+I++ + F
Sbjct: 63 LRKVSGHPNIIQLKDTYETNTF 84
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.2 bits (101), Expect = 2e-05
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 10/70 (14%)
Query: 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQL----------ERAFRSFDSECEVLRNVCH 489
L+G G +V+ + +K + + F
Sbjct: 6 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65
Query: 490 RNLIKILSSC 499
R L K+
Sbjct: 66 RALQKLQGLA 75
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 2e-05
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 7/158 (4%)
Query: 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP 238
L ++ + ++ + L L S L + +++N S+ + +L
Sbjct: 3 ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRRSS-MAATLR 58
Query: 239 SNIQTLKVLRVLDLSRNQLSGD---ISTIGALVDLETLSLASNQFQGPIPESVGSLISLE 295
+ + L L+LS N+L S + +L+ L+L+ N+ + + LE
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 296 SLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333
L L GN+LS +S +++ RL+G L
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHEL 156
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 42.9 bits (100), Expect = 6e-05
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
+G GSFG +++GT + + VAIK + + E + + I +
Sbjct: 12 RIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA--PQLRDEYRTYKLLAGCTGIPNV 66
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 46/335 (13%), Positives = 97/335 (28%), Gaps = 35/335 (10%)
Query: 46 LSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQN 105
+ L + +TTE D+ S + L +K + L N +G + AS ++
Sbjct: 5 IEGKSLKLDAITTE----DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60
Query: 106 F------YAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYN 159
F ++K IP+ + L L + + + + ++ L +
Sbjct: 61 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120
Query: 160 NLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWS 219
+ L G ++ + + LR + G N+L +
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180
Query: 220 LEYILMINLSSNSLNDSLPSNIQTLKVLRVLD--------------LSRNQLSGDISTIG 265
+ + + + + +L L + S +
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240
Query: 266 ALVDLETLSLASNQFQGPIPESVG------SLISLESLDLSGNNLSGKIPKSL-----ET 314
+ +L L L +V I L++L L N + ++L E
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300
Query: 315 LSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGN 349
+ L + NR + V + + G
Sbjct: 301 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (97), Expect = 1e-04
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSS 498
+LG G G V + A+K+ +A R E E+ ++++I+
Sbjct: 19 VLGLGINGKVLQIFNKRTQEKFALKMLQ-DCPKARR----EVELHWRASQCPHIVRIVDV 73
Query: 499 CSNPD 503
N
Sbjct: 74 YENLY 78
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 43/216 (19%), Positives = 72/216 (33%), Gaps = 17/216 (7%)
Query: 110 NCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDL 169
+ + Q +L G+T LS F + TI + L L GL LK N + P
Sbjct: 28 KSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLAPLKN 83
Query: 170 CHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLS 229
+ K I + T ++ + S+L L L +
Sbjct: 84 LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN 143
Query: 230 SNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVG 289
+ L ++ +V D ++ + L L TL N+ P +
Sbjct: 144 ISPLAGLTNLQYLSIGNAQVSD---------LTPLANLSKLTTLKADDNKISDISP--LA 192
Query: 290 SLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325
SL +L + L N +S P L S+L ++
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.001
Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 29/217 (13%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
++ + + T +L +++L +TT + + +L L L
Sbjct: 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT----------IEGVQYLNNLIGLELKD 72
Query: 86 NPL------GGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG 139
N + + S + + L+ ++ + + + L
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 140 TISPTMGRLKQLRGLSLKYNNLEGSIPYD--LCHLKLMYGIRLT-----GNKLSGHIPPC 192
+ + ++ + L+ N SI L +LT NK+S P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 193 LASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLS 229
LASL +L E+HL +N+++ P L + + ++ L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 3e-04
Identities = 24/214 (11%), Positives = 50/214 (23%), Gaps = 8/214 (3%)
Query: 26 DLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS 85
F L + ++ N++ + L
Sbjct: 35 RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 94
Query: 86 NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTM 145
NP P + S K + Q++ N + +
Sbjct: 95 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI-----QDNINIHTIERNSFV 149
Query: 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205
G + L L N ++ +L N L + L +
Sbjct: 150 GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 209
Query: 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPS 239
++ S L +L+ + + + LP+
Sbjct: 210 RTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.001
Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 25/196 (12%)
Query: 123 NLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG 182
+L + + T L + + ++++ + +L + + L G
Sbjct: 22 AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77
Query: 183 NKLSGHIPPCLASLTSLRELHLGSNKLT-----------------SSIPSSLWSLEYILM 225
NKL+ LA+L +L L L NK+ + S + L ++
Sbjct: 78 NKLTDI--KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135
Query: 226 INLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIP 285
+ N + + + DI + L L+ L L+ N
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--L 193
Query: 286 ESVGSLISLESLDLSG 301
++ L +L+ L+L
Sbjct: 194 RALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.003
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 17/207 (8%)
Query: 73 TNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSL 132
+L + + N S A N +K I L +T L L
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75
Query: 133 FNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPC 192
N L + L L+ L + + + I
Sbjct: 76 NGNKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130
Query: 193 LASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252
+ + ++ S L L+ + + + + + + L L+ L L
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-----VPLAGLTKLQNLYL 185
Query: 253 SRNQLSGDISTIGALVDLETLSLASNQ 279
S+N +S D+ + L +L+ L L +Q
Sbjct: 186 SKNHIS-DLRALAGLKNLDVLEL-FSQ 210
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 524 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.94 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.93 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.9 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.8 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.79 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.78 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.78 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.76 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.75 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.72 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.71 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.66 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.65 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.64 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.64 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.63 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.63 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.62 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.62 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.62 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.62 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.61 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.61 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.61 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.61 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.6 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.6 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.59 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.59 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.59 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.58 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.58 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.58 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.57 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.57 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.57 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.56 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.56 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.55 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.55 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.55 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.54 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.54 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.54 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.54 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.53 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.53 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.52 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.52 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.51 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.51 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.5 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.49 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.47 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.46 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.45 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.45 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.45 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.45 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.45 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.43 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.41 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.41 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.4 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.38 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.37 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.34 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.32 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.32 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.32 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.31 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.31 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.3 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.29 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.29 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.29 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.25 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.22 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.21 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.13 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.12 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 98.99 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 98.46 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.45 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.39 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 98.39 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.83 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.76 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.39 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.1 | |
| d1j7la_ | 263 | Type IIIa 3',5"-aminoglycoside phosphotransferase | 93.82 | |
| d1nd4a_ | 255 | Aminoglycoside 3'-phosphotransferase IIa (Kanamyci | 90.75 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=6.7e-31 Score=253.20 Aligned_cols=258 Identities=29% Similarity=0.519 Sum_probs=144.1
Q ss_pred CCCEEEccCCCCCCC--CChhHhcCcccccEEEecc-CcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCe
Q 040301 77 HLKALSLGSNPLGGI--LPPVIGNFSASFQNFYAFN-CKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRG 153 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 153 (524)
+++.|||++|.+.+. +|..+++++ +|++|++++ |++++.+|..|+++++|++|+|++|++.+..+..+..+.+|+.
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 455566666655542 445555554 555555543 4444445555555555555555555555444444444555555
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCC-CEEEcCCCc
Q 040301 154 LSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYI-LMINLSSNS 232 (524)
Q Consensus 154 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~ 232 (524)
+++++|.+.+.+|.. +..++.++.+++++|.+.+.+|..+..+..+ +.+++++|+
T Consensus 130 l~l~~N~~~~~~p~~------------------------l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~ 185 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPS------------------------ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSSEEESCCCGG------------------------GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred cccccccccccCchh------------------------hccCcccceeecccccccccccccccccccccccccccccc
Confidence 555555544444444 4444445555555554444444444444443 445555555
Q ss_pred CcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCccc
Q 040301 233 LNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS 311 (524)
Q Consensus 233 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 311 (524)
+.+..+..+..+..+ .++++++...+.. ..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|++++.+|+.
T Consensus 186 l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~ 263 (313)
T d1ogqa_ 186 LTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGG
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChH
Confidence 554444444444322 4555555544433 334455566666666666654433 4566666777777777777667777
Q ss_pred ccCCCCCCeEEccCCcCccccCCCCcCCCCCcccccCCCCCCCCCCCCCCCCC
Q 040301 312 LETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCK 364 (524)
Q Consensus 312 ~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~~lc~~p~~~~~~c~ 364 (524)
+..+++|+.|++++|.++|.+|..+.+..+..+++.||+.+||.|. |.|+
T Consensus 264 l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~pl---p~c~ 313 (313)
T d1ogqa_ 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL---PACT 313 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS---SCCC
T ss_pred HhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCC---CCCC
Confidence 7777777777777777777666655666777777888888888663 4563
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=5.8e-31 Score=253.66 Aligned_cols=252 Identities=28% Similarity=0.442 Sum_probs=193.5
Q ss_pred cCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccC-CCCCCCCChhHhcCcccccEEEeccCcccccCCcccc
Q 040301 44 RHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGS-NPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG 122 (524)
Q Consensus 44 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 122 (524)
.++++|+|++|.+++. ..+| ..++++++|++|||++ |++.|.+|..+.++. +|+.|++++|++.+..+..+.
T Consensus 50 ~~v~~L~L~~~~l~g~----~~lp--~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~~~ 122 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKP----YPIP--SSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSC----EECC--GGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGG
T ss_pred EEEEEEECCCCCCCCC----CCCC--hHHhcCcccccccccccccccccccccccccc-ccchhhhcccccccccccccc
Confidence 3799999999988753 1234 8999999999999997 889999999999998 999999999999999999999
Q ss_pred CCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCC-CEEEccCCcccccCCccccCCCCCCE
Q 040301 123 NLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLM-YGIRLTGNKLSGHIPPCLASLTSLRE 201 (524)
Q Consensus 123 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~ 201 (524)
.+.+|+.+++++|.+.+..|..+.++++|+.+++++|.+++.+|..+..+..+ +.+++++|++++..|..+..+.. ..
T Consensus 123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~ 201 (313)
T d1ogqa_ 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AF 201 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SE
T ss_pred chhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 99999999999999999999999999999999999999998899888877765 77788888887777766655433 35
Q ss_pred EEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCccc
Q 040301 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQ 281 (524)
Q Consensus 202 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~ 281 (524)
+++..+...+.+|..+..+++++.+++++| .+.+.+..+..+++|+.|+|++|+++
T Consensus 202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~------------------------~l~~~~~~~~~~~~L~~L~Ls~N~l~ 257 (313)
T d1ogqa_ 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKN------------------------SLAFDLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSS------------------------EECCBGGGCCCCTTCCEEECCSSCCE
T ss_pred cccccccccccccccccccccccccccccc------------------------cccccccccccccccccccCccCeec
Confidence 666655555555554444455555555544 44444444455556666666666666
Q ss_pred CCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcC
Q 040301 282 GPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328 (524)
Q Consensus 282 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l 328 (524)
+.+|..+..+++|++|+|++|+++|.+|. +..+++|+.+++++|+.
T Consensus 258 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred ccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence 66777777777777777777777766664 45666777777777763
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=1.2e-27 Score=237.08 Aligned_cols=303 Identities=24% Similarity=0.343 Sum_probs=199.7
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
+.....+|++|++++|+|+. + ..++.+++|++|++++|+++++ ..++++++|++|++++|++.+..+
T Consensus 39 ~~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l----------~~l~~L~~L~~L~L~~n~i~~i~~- 105 (384)
T d2omza2 39 SQTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI----------TPLKNLTKLVDILMNNNQIADITP- 105 (384)
T ss_dssp CHHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred CHHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCC----------ccccCCcccccccccccccccccc-
Confidence 33345789999999999984 3 4688999999999999999876 458889999999999999986543
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCc------------------------------------
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN------------------------------------ 138 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------------ 138 (524)
+..++ +|+.|+++++.+++..+ ......+..+....|.+.
T Consensus 106 -l~~l~-~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (384)
T d2omza2 106 -LANLT-NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181 (384)
T ss_dssp -GTTCT-TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred -ccccc-ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccc
Confidence 77777 99999999887764322 122223333333222211
Q ss_pred -----ccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCcc
Q 040301 139 -----GTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSI 213 (524)
Q Consensus 139 -----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 213 (524)
......+..+++++.+++++|.+++..| +...++|+.|++++|.++. + +.+..+++|+.|++++|.+.+..
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~ 257 (384)
T d2omza2 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA 257 (384)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred ccccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC
Confidence 1122344556677777777777765433 3455677777777777663 2 34666777777777777776432
Q ss_pred ChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCC
Q 040301 214 PSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLIS 293 (524)
Q Consensus 214 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 293 (524)
.+..+++|+.|++++|.+.+.. .+..++.++.++++.|.+.+. ..+..+++++.|++++|++++.. .+..+++
T Consensus 258 --~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~ 330 (384)
T d2omza2 258 --PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDIS--PVSSLTK 330 (384)
T ss_dssp --GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTT
T ss_pred --cccccccCCEeeccCcccCCCC--ccccccccccccccccccccc-cccchhcccCeEECCCCCCCCCc--ccccCCC
Confidence 3666777777777777776432 255667777777777776653 34566677777777777776532 2666777
Q ss_pred CCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCCCCCcccccC
Q 040301 294 LESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFG 348 (524)
Q Consensus 294 L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~ 348 (524)
|+.|++++|++++ ++ .+..+++|++|++++|++++..+ ...+..+..+++.+
T Consensus 331 L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~ 382 (384)
T d2omza2 331 LQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 382 (384)
T ss_dssp CCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCC
T ss_pred CCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCC
Confidence 7777777777763 33 46677777777777777766443 23344455444443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2.7e-26 Score=219.88 Aligned_cols=269 Identities=19% Similarity=0.265 Sum_probs=147.4
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
..+.+|-++++++ .+|..+. +++++|+|++|+|+.++. ..|.++++|++|++++|.+....|..|..+.
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~--------~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~ 79 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKD--------GDFKNLKNLHTLILINNKISKISPGAFAPLV 79 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcCh--------hHhhccccccccccccccccccchhhhhCCC
Confidence 4567777777777 6666653 477788888887777653 4677777777777777777765555555555
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|+++. +|.. ....|..|++.+|.+....+..+.....+..++...|....
T Consensus 80 -~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------- 138 (305)
T d1xkua_ 80 -KLERLYLSKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------- 138 (305)
T ss_dssp -TCCEEECCSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----------------
T ss_pred -ccCEecccCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccc-----------------
Confidence 55555555555552 2222 12345555555555554444444444455555544443221
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
....+..+..+++|+.+++++|.+. .++..+ .++|+.|++++|...+..+..+..++.++.|++++|.+.+.
T Consensus 139 -----~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~ 210 (305)
T d1xkua_ 139 -----SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210 (305)
T ss_dssp -----GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred -----cCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccc
Confidence 1112233444444555555544443 222221 34455555555555544445555555555555555555544
Q ss_pred c-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCccc------ccCCCCCCeEEccCCcCcc
Q 040301 261 I-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS------LETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 261 ~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~------~~~l~~L~~l~l~~n~l~~ 330 (524)
+ ..+..+++|++|+|++|+++ .+|.++..+++|+.|++++|+|+...... ....++|+.+++++|+++.
T Consensus 211 ~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~ 286 (305)
T d1xkua_ 211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286 (305)
T ss_dssp CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence 3 44455555556666666555 34555556666666666666665332222 2344567777777777653
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=5e-26 Score=217.97 Aligned_cols=242 Identities=21% Similarity=0.274 Sum_probs=191.3
Q ss_pred CccCCCCCCCCCCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEE
Q 040301 3 WRWGNHSPHGDSPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALS 82 (524)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 82 (524)
++|.+..+...++.+ ++++++|||++|+|+...+..|.++++|++|++++|.+..+.. ..|.++++|++|+
T Consensus 15 ~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~--------~~f~~l~~L~~L~ 85 (305)
T d1xkua_ 15 VQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP--------GAFAPLVKLERLY 85 (305)
T ss_dssp EECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEE
T ss_pred EEecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccch--------hhhhCCCccCEec
Confidence 345555555443334 4789999999999996556689999999999999999998753 6789999999999
Q ss_pred ccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCc--ccCCccccCCCCCCeEecccCc
Q 040301 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN--GTISPTMGRLKQLRGLSLKYNN 160 (524)
Q Consensus 83 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~ 160 (524)
+++|+++.. |..+. ..+..|.+..|.+....+..+.....+..++...|... ...+..+..+++|+.+++++|.
T Consensus 86 l~~n~l~~l-~~~~~---~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~ 161 (305)
T d1xkua_ 86 LSKNQLKEL-PEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161 (305)
T ss_dssp CCSSCCSBC-CSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ccCCccCcC-ccchh---hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence 999999954 43322 27899999999999877777888899999999887654 3345678888999999999998
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcC
Q 040301 161 LEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSN 240 (524)
Q Consensus 161 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 240 (524)
+. .+|..+ .++|+.|++++|......+..+..++.++.|++++|.+.+..+..+..+++|+.|+|++|.+. .+|..
T Consensus 162 l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~ 237 (305)
T d1xkua_ 162 IT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237 (305)
T ss_dssp CC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred cc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccc
Confidence 87 444433 567888888888888777778888888888888888888766777788888888888888887 45677
Q ss_pred ccCCCCCCEEEcCCCcCcccc
Q 040301 241 IQTLKVLRVLDLSRNQLSGDI 261 (524)
Q Consensus 241 ~~~l~~L~~L~l~~n~l~~~~ 261 (524)
+..+++|+.|++++|+|+.+.
T Consensus 238 l~~l~~L~~L~Ls~N~i~~i~ 258 (305)
T d1xkua_ 238 LADHKYIQVVYLHNNNISAIG 258 (305)
T ss_dssp TTTCSSCCEEECCSSCCCCCC
T ss_pred cccccCCCEEECCCCccCccC
Confidence 777888888888888777543
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=8.1e-26 Score=223.69 Aligned_cols=296 Identities=24% Similarity=0.317 Sum_probs=235.2
Q ss_pred EEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccc
Q 040301 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASF 103 (524)
Q Consensus 24 ~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L 103 (524)
..+++.+++++.+. ...+.+|++|++++++|+++ ..+..+++|++||+++|++++..+ +..++ +|
T Consensus 26 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l----------~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~-~L 90 (384)
T d2omza2 26 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI----------DGVEYLNNLTQINFSNNQLTDITP--LKNLT-KL 90 (384)
T ss_dssp HHHTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GTTCT-TC
T ss_pred HHHhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc----------cccccCCCCCEEeCcCCcCCCCcc--ccCCc-cc
Confidence 34677778876554 46788999999999999876 456788999999999999996543 88887 99
Q ss_pred cEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc--------------------
Q 040301 104 QNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG-------------------- 163 (524)
Q Consensus 104 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-------------------- 163 (524)
++|++++|.+.+.. .++++++|+.|++++|.+++..+ ......+..+....|.+..
T Consensus 91 ~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 166 (384)
T d2omza2 91 VDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT 166 (384)
T ss_dssp CEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC
T ss_pred cccccccccccccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998643 38999999999999999885443 2334455555444433221
Q ss_pred ---------------------cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCC
Q 040301 164 ---------------------SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEY 222 (524)
Q Consensus 164 ---------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 222 (524)
.....+..+++++.+++++|.+.+..| +...++|+.|++++|.++. + ..+..+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~ 242 (384)
T d2omza2 167 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTN 242 (384)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTT
T ss_pred hhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccc
Confidence 123456677899999999999986544 4667899999999999974 3 46788999
Q ss_pred CCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCC
Q 040301 223 ILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302 (524)
Q Consensus 223 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 302 (524)
|+.+++++|.+.+.. .+..+++|++|++++|.+++.. .+..++.++.+.+..|.+.+. ..+..+++++.|++++|
T Consensus 243 L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n 317 (384)
T d2omza2 243 LTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFN 317 (384)
T ss_dssp CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSS
T ss_pred cchhccccCccCCCC--cccccccCCEeeccCcccCCCC-ccccccccccccccccccccc--cccchhcccCeEECCCC
Confidence 999999999998643 3788999999999999998654 467788999999999999853 45788999999999999
Q ss_pred cCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCCCCCcccccCCC
Q 040301 303 NLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNY 350 (524)
Q Consensus 303 ~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~ 350 (524)
++++.. .+..+++|+.|++++|+++. ++....+..++.+++.+|.
T Consensus 318 ~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~ 362 (384)
T d2omza2 318 NISDIS--PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQ 362 (384)
T ss_dssp CCSCCG--GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSC
T ss_pred CCCCCc--ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCc
Confidence 999653 38899999999999999986 3334556778888888775
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8.1e-27 Score=221.03 Aligned_cols=228 Identities=21% Similarity=0.235 Sum_probs=181.3
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
..-..++.++++++ .+|..+. +.+++|+|++|+|+.++. ..|.++++|++||+++|.+....+..+...
T Consensus 11 ~~~~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~--------~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~ 79 (284)
T d1ozna_ 11 EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPA--------ASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (284)
T ss_dssp SSSCEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCeEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCH--------HHhhcccccccccccccccccccccccccc
Confidence 33456788998988 7787664 478999999999988764 678899999999999999998777777766
Q ss_pred cccccEEEec-cCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 100 SASFQNFYAF-NCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 100 ~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
. .+..+... .+.+....+..|.++++|+.|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|
T Consensus 80 ~-~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L 158 (284)
T d1ozna_ 80 A-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (284)
T ss_dssp T-TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred c-cccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhc
Confidence 6 77777654 556666667788888888888888888877777778888888888888888886666777788888888
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
++++|++....+..|.++++|+.+++++|++.+..|..|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+.
T Consensus 159 ~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence 88888887777777788888888888888887777777888888888888888887766677777788888888877765
Q ss_pred c
Q 040301 259 G 259 (524)
Q Consensus 259 ~ 259 (524)
.
T Consensus 239 C 239 (284)
T d1ozna_ 239 C 239 (284)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.5e-26 Score=214.27 Aligned_cols=210 Identities=22% Similarity=0.209 Sum_probs=145.0
Q ss_pred CCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc-CCcccccCCccccCCCCCCEEE
Q 040301 125 RGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT-GNKLSGHIPPCLASLTSLRELH 203 (524)
Q Consensus 125 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~ 203 (524)
+.+++|+|++|+++.+.+..|.++++|++|++++|.+....+..+..++.++.+... .+.+....+..|.++++|++|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 345566666666655555556666666666666666665555555556666665543 3445544556666677777777
Q ss_pred ccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccC
Q 040301 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQG 282 (524)
Q Consensus 204 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~ 282 (524)
+++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|++++.+ ..+..+++|+.+++++|++++
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~ 191 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence 7777666555556666677777777777776655666777777777777777777665 566777778888888888877
Q ss_pred CCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC
Q 040301 283 PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 283 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 334 (524)
..|..|..+++|++|++++|++.+..+..+..+++|+++++++|++.|.+..
T Consensus 192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~ 243 (284)
T d1ozna_ 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (284)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence 7778888888888888888888877777888888888888888888876643
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.4e-23 Score=193.67 Aligned_cols=179 Identities=24% Similarity=0.181 Sum_probs=112.2
Q ss_pred CCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcC
Q 040301 150 QLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLS 229 (524)
Q Consensus 150 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 229 (524)
++++|+|++|.|++..+..|..+++|++|++++|+++. ++ .+..+++|++|++++|++. ..+..+..+++|+.|+++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~ 108 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccc-cccccccccccccccccc
Confidence 34444444444443333444444444444444444442 12 1344555666666666555 234455556666666666
Q ss_pred CCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCC
Q 040301 230 SNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308 (524)
Q Consensus 230 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 308 (524)
+|.+.+..+..+..+.+++.|++++|.+...+ ..+..+++|+.+++++|++++..+..|..+++|++|+|++|+|+ .+
T Consensus 109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l 187 (266)
T d1p9ag_ 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (266)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence 66665555555666666777777777666655 44556677777777777777666677777888888888888887 67
Q ss_pred cccccCCCCCCeEEccCCcCcccc
Q 040301 309 PKSLETLSHLKQFNASHNRLEGKI 332 (524)
Q Consensus 309 ~~~~~~l~~L~~l~l~~n~l~~~~ 332 (524)
|+.+..+++|+.+++++|++.|.+
T Consensus 188 p~~~~~~~~L~~L~L~~Np~~CdC 211 (266)
T d1p9ag_ 188 PKGFFGSHLLPFAFLHGNPWLCNC 211 (266)
T ss_dssp CTTTTTTCCCSEEECCSCCBCCSG
T ss_pred ChhHCCCCCCCEEEecCCCCCCCc
Confidence 777777888888888888887754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=6.8e-23 Score=191.59 Aligned_cols=197 Identities=23% Similarity=0.185 Sum_probs=89.6
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
.+.++|.++++++. +|..+. .+++.|+|++|.+++..+..|.++++|++|+|++|+++... .++.+++|++|++
T Consensus 11 ~~~~v~C~~~~L~~-iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 11 SHLEVNCDKRNLTA-LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDL 84 (266)
T ss_dssp TCCEEECTTSCCSS-CCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEEC
T ss_pred CCeEEEccCCCCCe-eCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccc
Confidence 34444555555442 232221 13444444444444333444555555555555555554321 2344455555555
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc
Q 040301 157 KYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236 (524)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (524)
++|+++ ..+..+..+++|+.|++++|.+.+..+..+..+.+ ++.|++++|.+...
T Consensus 85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~------------------------l~~L~l~~n~l~~l 139 (266)
T d1p9ag_ 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE------------------------LQELYLKGNELKTL 139 (266)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT------------------------CCEEECTTSCCCCC
T ss_pred cccccc-ccccccccccccccccccccccceeeccccccccc------------------------ccccccccccccee
Confidence 555544 22333444444444444444443333333333444 44444444444433
Q ss_pred CCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 040301 237 LPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305 (524)
Q Consensus 237 ~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 305 (524)
.+..+..+++|+.|++++|++++.+ ..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus 140 ~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 3333344444444444444444433 33444455555555555555 44555555556666666666554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=3.3e-18 Score=166.09 Aligned_cols=266 Identities=26% Similarity=0.311 Sum_probs=166.2
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.++++|||++|+++ .+|+. .++|++|+|++|+|+.++ .. +.+|+.|++++|.++.. + .+
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~lp---------~~---~~~L~~L~l~~n~l~~l-~----~l 96 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELP---------EL---PQSLKSLLVDNNNLKAL-S----DL 96 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSCC---------CC---CTTCCEEECCSSCCSCC-C----SC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCcccc---------cc---hhhhhhhhhhhcccchh-h----hh
Confidence 57999999999998 67864 578999999999998764 22 35799999999999843 2 23
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
+..|++|++++|.+. .+|. ++++++|+.|++++|.+..... ....+..+.+..+... .+..+..++.++.+.
T Consensus 97 p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~ 168 (353)
T d1jl5a_ 97 PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIY 168 (353)
T ss_dssp CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEE
T ss_pred ccccccccccccccc-cccc-hhhhccceeecccccccccccc----ccccccchhhcccccc--ccccccccccceecc
Confidence 447999999999998 4553 6889999999999998873322 2345556665555443 233455566666666
Q ss_pred ccCCcccccC------------------CccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCc
Q 040301 180 LTGNKLSGHI------------------PPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNI 241 (524)
Q Consensus 180 l~~n~l~~~~------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 241 (524)
+.+|...... ...+..++.|+.+++++|.... .+. ...++..+.+..+.+.. .+.
T Consensus 169 l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~-~~~-- 241 (353)
T d1jl5a_ 169 ADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPE-- 241 (353)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCC--
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-ccc---ccccccccccccccccc-ccc--
Confidence 6666543211 1123445666666666665542 222 23445555555555542 111
Q ss_pred cCCCCCCEEEcCCCcCcccc-----------------ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcC
Q 040301 242 QTLKVLRVLDLSRNQLSGDI-----------------STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNL 304 (524)
Q Consensus 242 ~~l~~L~~L~l~~n~l~~~~-----------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 304 (524)
....+...++..+.+.+.. .....+++|++|+|++|+++ .+|. .+++|+.|++++|++
T Consensus 242 -~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L 316 (353)
T d1jl5a_ 242 -LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHL 316 (353)
T ss_dssp -CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred -ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcC
Confidence 1223333343333322111 01122467778888888777 4554 356777788888877
Q ss_pred CCCCcccccCCCCCCeEEccCCcCcc
Q 040301 305 SGKIPKSLETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 305 ~~~~~~~~~~l~~L~~l~l~~n~l~~ 330 (524)
+ .+|.. +++|+.|++++|+++.
T Consensus 317 ~-~l~~~---~~~L~~L~L~~N~L~~ 338 (353)
T d1jl5a_ 317 A-EVPEL---PQNLKQLHVEYNPLRE 338 (353)
T ss_dssp S-CCCCC---CTTCCEEECCSSCCSS
T ss_pred C-ccccc---cCCCCEEECcCCcCCC
Confidence 7 45542 4567778888777764
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.80 E-value=1.2e-19 Score=165.13 Aligned_cols=206 Identities=20% Similarity=0.294 Sum_probs=107.7
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
++..++++.+++++.. .+..+.+|++|++++|+++++ ..+..+++|++|++++|.+.+..| +..+.
T Consensus 20 ~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l----------~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~ 85 (227)
T d1h6ua2 20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI----------EGVQYLNNLIGLELKDNQITDLAP--LKNLT 85 (227)
T ss_dssp HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GTTCC
T ss_pred HHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc----------hhHhcCCCCcEeecCCceeecccc--ccccc
Confidence 3445666666766443 456677777777777777654 345667777777777777664322 44444
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+++.+++++|.++. + ..++++++|+.++++++...+. ..+...+.++.+.++++.+..
T Consensus 86 -~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~----------------- 143 (227)
T d1h6ua2 86 -KITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN----------------- 143 (227)
T ss_dssp -SCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC-----------------
T ss_pred -cccccccccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhch-----------------
Confidence 55555555554442 1 2344555555555555544322 123334444444444444432
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|++.+ ++ .++.+++|++|++++|++++.
T Consensus 144 -------~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i 210 (227)
T d1h6ua2 144 -------I--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV 210 (227)
T ss_dssp -------C--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred -------h--hhhccccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC
Confidence 1 1234445555555555554422 224455555555555555543 22 245555556666655555543
Q ss_pred cccccccCCCCEEEcc
Q 040301 261 ISTIGALVDLETLSLA 276 (524)
Q Consensus 261 ~~~~~~l~~L~~L~L~ 276 (524)
+ .+..+++|+.|+++
T Consensus 211 ~-~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 211 S-PLANTSNLFIVTLT 225 (227)
T ss_dssp G-GGTTCTTCCEEEEE
T ss_pred c-ccccCCCCCEEEee
Confidence 3 34555566666554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.79 E-value=2.6e-19 Score=162.85 Aligned_cols=185 Identities=22% Similarity=0.308 Sum_probs=138.9
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+|+.|++.+|.++. + ..+..+++|++|++++|++.+.. .+..+++|+.+++++|.++. + ..+..+++|+.+.++
T Consensus 42 ~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~ 115 (227)
T d1h6ua2 42 GITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT 115 (227)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred CcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccccccccc
Confidence 44555555555443 2 23666777777777777776443 26777777777777777763 2 246777888888888
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 261 (524)
++...+. ..+...+.++.+.++.+.+... ..+..+++|+.|++++|.+.+. ..++.+++|+.|++++|++++.+
T Consensus 116 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~ 189 (227)
T d1h6ua2 116 STQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDIS 189 (227)
T ss_dssp TSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG
T ss_pred ccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCCCh
Confidence 8776533 3366678899999999888643 4577889999999999998753 34889999999999999998754
Q ss_pred ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCC
Q 040301 262 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 301 (524)
Q Consensus 262 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 301 (524)
.+..+++|++|+|++|++++. + .+.++++|+.|++++
T Consensus 190 -~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 190 -PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred -hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 578899999999999999964 4 388999999999863
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.1e-19 Score=162.08 Aligned_cols=199 Identities=15% Similarity=0.134 Sum_probs=110.0
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCC-ChhHhcCcc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGIL-PPVIGNFSA 101 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~ 101 (524)
+.++.++++++ .+|..+. +++++|++++|+++.++. ..|.++++|++|++++|.+...+ +..|..+.
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~--------~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~- 78 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQK--------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLP- 78 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECT--------TTTTTCTTCCEEEEESCTTCCEECSSSEESCT-
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccCh--------hHhhccchhhhhhhccccccceeecccccccc-
Confidence 57888888888 7776653 478888888888887654 56788888888888888876543 34455554
Q ss_pred cccEEEecc-CcccccCCccccCCCCCCeEEcccCcCcccCCc-cccCCCCCCeEecccCcccccCCccccCCC-CCCEE
Q 040301 102 SFQNFYAFN-CKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP-TMGRLKQLRGLSLKYNNLEGSIPYDLCHLK-LMYGI 178 (524)
Q Consensus 102 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L 178 (524)
+++++.+.. |.+....+..|.++++|+.|++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|
T Consensus 79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L 158 (242)
T d1xwdc1 79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 158 (242)
T ss_dssp TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceee
Confidence 666666543 455555566666666777777766666533221 122233333444444455433333444332 34455
Q ss_pred EccCCcccccCCccccCCCCCCEE-EccCCcCCCccChhccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLREL-HLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 234 (524)
++++|+++...+.. ...++++.+ ++.+|.++...+..|..+++|+.|++++|+++
T Consensus 159 ~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~ 214 (242)
T d1xwdc1 159 WLNKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 214 (242)
T ss_dssp ECCSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred eccccccccccccc-ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence 55555554322222 222333222 23444444222233444444555555444444
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.78 E-value=6.1e-17 Score=156.98 Aligned_cols=266 Identities=24% Similarity=0.251 Sum_probs=175.4
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP 93 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 93 (524)
.|+. +++|++|++++|+|+ .+|..+ .+|+.|++++|+++.++. +| +.|++|++++|.+... |
T Consensus 53 lp~~-~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~~----lp--------~~L~~L~L~~n~l~~l-p 114 (353)
T d1jl5a_ 53 LPEL-PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSD----LP--------PLLEYLGVSNNQLEKL-P 114 (353)
T ss_dssp CCSC-CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCCS----CC--------TTCCEEECCSSCCSSC-C
T ss_pred CCCC-CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhhh----hc--------cccccccccccccccc-c
Confidence 3544 368999999999999 778754 589999999999987642 11 4699999999999854 4
Q ss_pred hhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccccc---------
Q 040301 94 PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGS--------- 164 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--------- 164 (524)
. +..+. +|+.|++.+|.+....+ ....+..+.+..+... ....+..++.++.+++++|.....
T Consensus 115 ~-~~~l~-~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~ 186 (353)
T d1jl5a_ 115 E-LQNSS-FLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLES 186 (353)
T ss_dssp C-CTTCT-TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred c-hhhhc-cceeecccccccccccc----ccccccchhhcccccc--ccccccccccceecccccccccccccccccccc
Confidence 3 46676 99999999988764322 2345556666555443 233455566666666665554321
Q ss_pred ---------CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcc
Q 040301 165 ---------IPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND 235 (524)
Q Consensus 165 ---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 235 (524)
....+..++.|+.+++++|.... .+. ...++..+.+..+.+... +.. ...+...++..+.+.+
T Consensus 187 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~~---~~~l~~~~~~~~~~~~ 258 (353)
T d1jl5a_ 187 IVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSG 258 (353)
T ss_dssp EECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSE
T ss_pred cccccccccccccccccccccccccccccccc-ccc---cccccccccccccccccc-ccc---cccccccccccccccc
Confidence 11234567888999999887653 332 245677777777766522 111 2233333333322221
Q ss_pred ----------------cCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeC
Q 040301 236 ----------------SLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 299 (524)
Q Consensus 236 ----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 299 (524)
.++.....+++|++|++++|+++.++. .+++|+.|+|++|+++ .+|. .+++|+.|++
T Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L 331 (353)
T d1jl5a_ 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHV 331 (353)
T ss_dssp ESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred cccccchhcccccccCccccccccCCCCCEEECCCCccCcccc---ccCCCCEEECCCCcCC-cccc---ccCCCCEEEC
Confidence 111222346899999999999987764 3578999999999998 5665 3568999999
Q ss_pred CCCcCCCCCcccccCCCCCCeEEcc
Q 040301 300 SGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 300 ~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
++|+++ .+|+.. .+|+.|.+.
T Consensus 332 ~~N~L~-~lp~~~---~~L~~L~~~ 352 (353)
T d1jl5a_ 332 EYNPLR-EFPDIP---ESVEDLRMN 352 (353)
T ss_dssp CSSCCS-SCCCCC---TTCCEEECC
T ss_pred cCCcCC-CCCccc---cccCeeECc
Confidence 999998 566533 356666553
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.3e-18 Score=156.33 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=97.1
Q ss_pred CCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccC-CccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEE
Q 040301 126 GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSI-PYDLCHLKLMYGIRLTG-NKLSGHIPPCLASLTSLRELH 203 (524)
Q Consensus 126 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 203 (524)
++++|++++|+++.+.+.+|.++++|++|++++|.+...+ +..|..++.++.+.+.. |.+....+..|.++++|++++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~ 109 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence 4455555555554444444455555555555555444322 22344455555554432 344444444455555555555
Q ss_pred ccCCcCCCccC-hhccCCCCCCEEEcCCCcCcccCCcCccCCC-CCCEEEcCCCcCccccccccccCCCCEE-EccCCcc
Q 040301 204 LGSNKLTSSIP-SSLWSLEYILMINLSSNSLNDSLPSNIQTLK-VLRVLDLSRNQLSGDISTIGALVDLETL-SLASNQF 280 (524)
Q Consensus 204 l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~L~~L-~L~~N~l 280 (524)
+++|.+....+ ..+..+..+..+...++.+....+..+..++ .++.|++++|+++..........++..+ .+++|++
T Consensus 110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l 189 (242)
T d1xwdc1 110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189 (242)
T ss_dssp EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC
T ss_pred cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccc
Confidence 55555542211 1222334444444455555443344444432 5566666666666554333333444443 4555666
Q ss_pred cCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEE
Q 040301 281 QGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFN 322 (524)
Q Consensus 281 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~ 322 (524)
+...+..|..+++|+.|++++|+++...+..+..+++|+.++
T Consensus 190 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~ 231 (242)
T d1xwdc1 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 231 (242)
T ss_dssp CCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred ccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence 644444566677777777777777644344455544444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=2.3e-18 Score=152.89 Aligned_cols=179 Identities=25% Similarity=0.382 Sum_probs=91.4
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
..++++.+++++..+ ...+.++++|++++|.++.+ ..+..+++|++|++++|++++..| +..++ +
T Consensus 21 i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l----------~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~-~ 85 (199)
T d2omxa2 21 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI----------DGVEYLNNLTQINFSNNQLTDITP--LKNLT-K 85 (199)
T ss_dssp HHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GTTCT-T
T ss_pred HHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc----------cccccCCCcCcCccccccccCccc--ccCCc-c
Confidence 345566666664432 34566777777777777654 345556677777777777664322 44444 4
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccC
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG 182 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 182 (524)
|+.|++++|.+.. ++ .++++++|+.|++++|.+... .. +..+++|+.|++++
T Consensus 86 L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~------------------------~~~l~~L~~L~l~~ 137 (199)
T d2omxa2 86 LVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DP------------------------LKNLTNLNRLELSS 137 (199)
T ss_dssp CCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GG------------------------GTTCTTCSEEECCS
T ss_pred ccccccccccccc-cc-ccccccccccccccccccccc--cc------------------------cchhhhhHHhhhhh
Confidence 5555555544432 11 244444555555544444321 12 34444444555554
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEE
Q 040301 183 NKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVL 250 (524)
Q Consensus 183 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 250 (524)
|++.. + +.+..+++|+.|++.+|++++. ..+..+++|+.|++++|++++ ++ .++.+++|+.|
T Consensus 138 n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 138 NTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp SCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred hhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence 44432 1 2344455555555555555432 124555555555555555543 22 34555555543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.75 E-value=7.3e-19 Score=155.20 Aligned_cols=130 Identities=25% Similarity=0.301 Sum_probs=101.9
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCC-CCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTE-SSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
.+.+|.++++++ .+|..+. +++++|+|++|+|+.. .. ..|.++++|++|+|++|.+....+..+..+.
T Consensus 10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~--------~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~ 78 (192)
T d1w8aa_ 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSD--------GLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCS--------CSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccc--------cccCCCceEeeeecccccccccccccccccc
Confidence 457899999998 7777663 5888999999988753 22 6677888889999988888877777777776
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG 163 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 163 (524)
+|++|++++|++....+..|.++++|++|+|++|+++.+.+.+|..+++|++|+|++|.+..
T Consensus 79 -~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 79 -HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp -TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred -ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence 78888888888877777777788888888888888877777777777788888887777763
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=1.9e-18 Score=154.77 Aligned_cols=180 Identities=27% Similarity=0.373 Sum_probs=99.4
Q ss_pred EEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccccc
Q 040301 25 MDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQ 104 (524)
Q Consensus 25 Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 104 (524)
.++..+++++.++. ..+.+|++|++++|+++.+ ..+..+++|++|++++|++++..
T Consensus 29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l----------~~l~~l~~L~~L~L~~n~i~~l~------------ 84 (210)
T d1h6ta2 29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV----------QGIQYLPNVTKLFLNGNKLTDIK------------ 84 (210)
T ss_dssp HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC----------TTGGGCTTCCEEECCSSCCCCCG------------
T ss_pred HHhCcCccCCccCH--HHhcCccEEECcCCCCCCc----------hhHhhCCCCCEEeCCCccccCcc------------
Confidence 34555555544332 3455666666666666554 23445556666666666555321
Q ss_pred EEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCc
Q 040301 105 NFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNK 184 (524)
Q Consensus 105 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 184 (524)
.++++++|+.|++++|++++. + .+..+++|+.|++++|.+.. ...+..++.++.+++++|.
T Consensus 85 ---------------~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~ 145 (210)
T d1h6ta2 85 ---------------PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNK 145 (210)
T ss_dssp ---------------GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSC
T ss_pred ---------------ccccCcccccccccccccccc-c-cccccccccccccccccccc--ccccccccccccccccccc
Confidence 134455555555555555532 2 34555555666655555542 1235555666666666666
Q ss_pred ccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcC
Q 040301 185 LSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253 (524)
Q Consensus 185 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 253 (524)
+.+ +..+..+++|+.+++++|++.+. + .+..+++|+.|++++|.+++ ++ .+..+++|++|+++
T Consensus 146 l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 146 ITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp CCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred ccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 542 22345566666666666666532 2 25666677777777776653 33 46667777777765
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=9.2e-18 Score=150.23 Aligned_cols=165 Identities=22% Similarity=0.253 Sum_probs=109.2
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
...+|+.|++++|++++ ++ .+.++++|++|++++|+++++ ..++++++|++|++++|++++. | .+.
T Consensus 44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l----------~~~~~l~~L~~L~l~~n~i~~l-~-~l~ 109 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI----------KPLANLKNLGWLFLDENKVKDL-S-SLK 109 (210)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCG-G-GGT
T ss_pred HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc----------cccccCcccccccccccccccc-c-ccc
Confidence 45689999999999984 33 488999999999999999876 4567899999999999998843 3 355
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.++ +|+.|++++|.+.. ...+..++.|+.+++++|.+++ +..+..+++|+.+++++|++++. + .+..+++|+.
T Consensus 110 ~l~-~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~ 182 (210)
T d1h6ta2 110 DLK-KLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQN 182 (210)
T ss_dssp TCT-TCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred ccc-cccccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCE
Confidence 555 66666666666542 2345666666666666666653 22345566666666666666532 2 2555555555
Q ss_pred EEccCCcccccCCccccCCCCCCEEEcc
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLG 205 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 205 (524)
|++++|+++. ++ .+..+++|++|+++
T Consensus 183 L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 183 LYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp EECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred EECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 5555555542 22 35555555555543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.7e-19 Score=181.78 Aligned_cols=306 Identities=21% Similarity=0.205 Sum_probs=196.7
Q ss_pred CccEEEccCCcccccC-CcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc-
Q 040301 21 IYWVMDLSSNSFSGHI-PNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN- 98 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~- 98 (524)
+|+.||+++|++++.. .+.+..++++++|+|++|+++.... ..+. ..+..+++|++|||++|+++...-..+..
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~--~~l~--~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~ 78 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--KDIS--SALRVNPALAELNLRSNELGDVGVHCVLQG 78 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--HHHH--HHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHH--HHHH--HHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence 6899999999998543 4446778999999999999875321 0111 44678899999999999986432222222
Q ss_pred ---CcccccEEEeccCccccc----CCccccCCCCCCeEEcccCcCcccCCcc---------------------------
Q 040301 99 ---FSASFQNFYAFNCKLKGN----IPQEIGNLRGLTLLSLFNNDLNGTISPT--------------------------- 144 (524)
Q Consensus 99 ---~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------------------- 144 (524)
...+|+.|++++|+++.. ++..+..+++|++|++++|.++......
T Consensus 79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (460)
T d1z7xw1 79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 158 (460)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence 123799999999998753 4556778899999999999875311000
Q ss_pred ------ccCCCCCCeEecccCccccc---------------------------------CCccccCCCCCCEEEccCCcc
Q 040301 145 ------MGRLKQLRGLSLKYNNLEGS---------------------------------IPYDLCHLKLMYGIRLTGNKL 185 (524)
Q Consensus 145 ------~~~l~~L~~L~L~~n~i~~~---------------------------------~~~~~~~l~~L~~L~l~~n~l 185 (524)
+.....++.++++++.+... ....+...+.++.+++++|.+
T Consensus 159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~ 238 (460)
T d1z7xw1 159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238 (460)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence 11124555666655543310 001122345566677666654
Q ss_pred ccc-----CCccccCCCCCCEEEccCCcCCCc----cChhccCCCCCCEEEcCCCcCcccCCcC----c-cCCCCCCEEE
Q 040301 186 SGH-----IPPCLASLTSLRELHLGSNKLTSS----IPSSLWSLEYILMINLSSNSLNDSLPSN----I-QTLKVLRVLD 251 (524)
Q Consensus 186 ~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~ 251 (524)
... ..........++.+++++|.+... ....+...+.+..+++++|.+.+..... + .....|+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~ 318 (460)
T d1z7xw1 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 318 (460)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred cccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence 321 122234456788888888876532 2234456778888888888775421111 1 2345788888
Q ss_pred cCCCcCcccc-----ccccccCCCCEEEccCCcccCC----Cccccc-CCCCCCEEeCCCCcCCCC----CcccccCCCC
Q 040301 252 LSRNQLSGDI-----STIGALVDLETLSLASNQFQGP----IPESVG-SLISLESLDLSGNNLSGK----IPKSLETLSH 317 (524)
Q Consensus 252 l~~n~l~~~~-----~~~~~l~~L~~L~L~~N~l~~~----~~~~~~-~l~~L~~L~l~~N~l~~~----~~~~~~~l~~ 317 (524)
+++|.+.... ..+...++|++|+|++|++.+. ++..+. ..+.|++|++++|.++.. +.+.+..+++
T Consensus 319 l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 398 (460)
T d1z7xw1 319 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398 (460)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred ccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCC
Confidence 8888876543 2234556889999999888643 233332 456789999999988743 3455667788
Q ss_pred CCeEEccCCcCcc
Q 040301 318 LKQFNASHNRLEG 330 (524)
Q Consensus 318 L~~l~l~~n~l~~ 330 (524)
|++|++++|+++.
T Consensus 399 L~~L~Ls~N~i~~ 411 (460)
T d1z7xw1 399 LRELDLSNNCLGD 411 (460)
T ss_dssp CCEEECCSSSCCH
T ss_pred CCEEECCCCcCCH
Confidence 9999999988864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=4.1e-17 Score=144.67 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=131.4
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++++.|++++|+++. ++ .++++++|++|++++|+++++ ..+.++++|++|++++|.+... + .+.
T Consensus 38 ~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~----------~~l~~l~~L~~L~l~~n~~~~~-~-~l~ 103 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI----------TPLKNLTKLVDILMNNNQIADI-T-PLA 103 (199)
T ss_dssp HHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCC-G-GGT
T ss_pred HhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCc----------ccccCCcccccccccccccccc-c-ccc
Confidence 45799999999999984 43 588999999999999999875 4588899999999999998854 3 377
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.+. +|+.|++++|.+... ..+..+++|+.|++++|++... +.+..+++|+.|++.+|.+++. + .+..+++|+.
T Consensus 104 ~l~-~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~ 176 (199)
T d2omxa2 104 NLT-NLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLER 176 (199)
T ss_dssp TCT-TCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred ccc-ccccccccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC-c-cccCCCCCCE
Confidence 777 999999999988753 3588999999999999998743 4688899999999999998853 2 3777888888
Q ss_pred EEccCCcccccCCccccCCCCCCEE
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLREL 202 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L 202 (524)
|++++|++++ ++ .+..+++|+.|
T Consensus 177 L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 177 LDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp EECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred EECCCCCCCC-Cc-cccCCCCCCcC
Confidence 8888888764 33 46677777664
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=1.1e-17 Score=147.57 Aligned_cols=109 Identities=24% Similarity=0.345 Sum_probs=52.7
Q ss_pred CCCeEecccCcccccC-CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEc
Q 040301 150 QLRGLSLKYNNLEGSI-PYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINL 228 (524)
Q Consensus 150 ~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 228 (524)
++++|+|++|.|+..+ +..|..+++|+.|++++|.+....+..|..+++|+.|++++|++....+.+|.++++|+.|+|
T Consensus 30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L 109 (192)
T d1w8aa_ 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence 3444444444443222 233344444444444444444444444444455555555555554444444555555555555
Q ss_pred CCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 229 SSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 229 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
++|++++..+.+|..+++|++|++++|.+.
T Consensus 110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccccccCHHHhcCCcccccccccccccc
Confidence 555555444455555555555555555554
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=4.5e-17 Score=152.78 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=86.9
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 502 (524)
..+++|+...++|+..+.||+|+||+||+|++. +++.||||+++.... ..++|.+|+++|++++|||||+++|+|.++
T Consensus 7 p~~~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~E~~il~~l~HpnIv~~~~~~~~~ 85 (287)
T d1opja_ 7 PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTRE 85 (287)
T ss_dssp TTCCTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CCCcccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc-hHHHHHHHHHHHHhCCCCCEecCCccEeeC
Confidence 355667777788999999999999999999974 588899999975432 456799999999999999999999999999
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..++|||||++|+|.+++++
T Consensus 86 ~~~~iv~E~~~~g~l~~~l~~ 106 (287)
T d1opja_ 86 PPFYIITEFMTYGNLLDYLRE 106 (287)
T ss_dssp SSCEEEEECCTTCBHHHHHHH
T ss_pred CeeEEEeecccCcchHHHhhh
Confidence 999999999999999999864
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.5e-18 Score=170.56 Aligned_cols=307 Identities=21% Similarity=0.166 Sum_probs=189.6
Q ss_pred CCccEEEccCCccccc----CCcccccccCCCEEEccccccCCCCCCccccCccccCC-CCCCCCEEEccCCCCCCC---
Q 040301 20 QIYWVMDLSSNSFSGH----IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALT-NCRHLKALSLGSNPLGGI--- 91 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--- 91 (524)
++++.|+|++|+++.. +...+..+++|++|+|++|.++.... ..+...+. ...+|++|+|++|+++..
T Consensus 27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~----~~l~~~l~~~~~~L~~L~L~~n~it~~~~~ 102 (460)
T d1z7xw1 27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV----HCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102 (460)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH----HHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHH----HHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence 5667777777766632 23444566667777777776643210 00001221 224567777777766543
Q ss_pred -CChhHhcCcccccEEEeccCcccccCC---------------------------------ccccCCCCCCeEEcccCcC
Q 040301 92 -LPPVIGNFSASFQNFYAFNCKLKGNIP---------------------------------QEIGNLRGLTLLSLFNNDL 137 (524)
Q Consensus 92 -~~~~~~~~~~~L~~L~l~~n~l~~~~~---------------------------------~~~~~l~~L~~L~l~~n~l 137 (524)
++..+...+ +|++|++++|.+..... ..+.....++.++++++..
T Consensus 103 ~l~~~l~~~~-~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~ 181 (460)
T d1z7xw1 103 VLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181 (460)
T ss_dssp HHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred cccchhhccc-cccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccc
Confidence 223334444 66777776665432100 0011234455555544432
Q ss_pred c-----------------------------cc----CCccccCCCCCCeEecccCcccc-----cCCccccCCCCCCEEE
Q 040301 138 N-----------------------------GT----ISPTMGRLKQLRGLSLKYNNLEG-----SIPYDLCHLKLMYGIR 179 (524)
Q Consensus 138 ~-----------------------------~~----~~~~~~~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~ 179 (524)
. .. ....+...+.++.+++++|.+.. ...........++.++
T Consensus 182 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~ 261 (460)
T d1z7xw1 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 261 (460)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccc
Confidence 2 10 00112345788899999988753 2233455678899999
Q ss_pred ccCCccccc----CCccccCCCCCCEEEccCCcCCCccCh----hc-cCCCCCCEEEcCCCcCcccCCc----CccCCCC
Q 040301 180 LTGNKLSGH----IPPCLASLTSLRELHLGSNKLTSSIPS----SL-WSLEYILMINLSSNSLNDSLPS----NIQTLKV 246 (524)
Q Consensus 180 l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~-~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~ 246 (524)
+++|.+... ....+...+.++.+++++|.+...... .+ .....|+.+++++|.+...... .+...++
T Consensus 262 l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~ 341 (460)
T d1z7xw1 262 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 341 (460)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccc
Confidence 999987643 223355678999999999988643222 22 2346899999999998754322 3345678
Q ss_pred CCEEEcCCCcCcccc-----cccc-ccCCCCEEEccCCcccCC----CcccccCCCCCCEEeCCCCcCCCCCccc----c
Q 040301 247 LRVLDLSRNQLSGDI-----STIG-ALVDLETLSLASNQFQGP----IPESVGSLISLESLDLSGNNLSGKIPKS----L 312 (524)
Q Consensus 247 L~~L~l~~n~l~~~~-----~~~~-~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~ 312 (524)
|++|+|++|.+.+.. ..+. ..+.|++|+|++|+++.. ++..+..+++|++|++++|+++...... +
T Consensus 342 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l 421 (460)
T d1z7xw1 342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421 (460)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred hhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHH
Confidence 999999999987532 2232 456799999999999753 3455667899999999999998543322 3
Q ss_pred c-CCCCCCeEEccCCcCccc
Q 040301 313 E-TLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 313 ~-~l~~L~~l~l~~n~l~~~ 331 (524)
. ....|+.+++.+|.+...
T Consensus 422 ~~~~~~L~~l~l~~~~~~~~ 441 (460)
T d1z7xw1 422 RQPGCLLEQLVLYDIYWSEE 441 (460)
T ss_dssp TSTTCCCCEEECTTCCCCHH
T ss_pred HhCCCccCEEECCCCCCCHH
Confidence 2 334799999999988653
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.3e-16 Score=147.93 Aligned_cols=89 Identities=22% Similarity=0.293 Sum_probs=80.6
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
++|+..+.||+|+||+||+|.+.+++.||||+++... ...++|.+|++++++++|||||+++|+|..++..++|||||+
T Consensus 5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~ 83 (263)
T d1sm2a_ 5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 83 (263)
T ss_dssp SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecC
Confidence 5788889999999999999999888889999997543 235679999999999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 040301 514 NISITIIRRH 523 (524)
Q Consensus 514 ~gsL~~~l~~ 523 (524)
+|+|.++++.
T Consensus 84 ~g~L~~~l~~ 93 (263)
T d1sm2a_ 84 HGCLSDYLRT 93 (263)
T ss_dssp TCBHHHHHHT
T ss_pred CCcHHHHhhc
Confidence 9999999854
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.5e-16 Score=147.78 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=82.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.+.|+..+.||+|+||+||+|.. .+|+.||||++........+.+.+|++++++++|||||++++++.+++..|+||||
T Consensus 19 ~~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy 98 (293)
T d1yhwa1 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (293)
T ss_dssp TTTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred ccccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEe
Confidence 34699999999999999999996 57899999999765544567899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
|++|+|.+++++
T Consensus 99 ~~gg~L~~~~~~ 110 (293)
T d1yhwa1 99 LAGGSLTDVVTE 110 (293)
T ss_dssp CTTCBHHHHHHH
T ss_pred cCCCcHHHHhhc
Confidence 999999998764
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.9e-16 Score=145.94 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=80.4
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccC
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 513 (524)
++|+..++||+|+||.||+|++++++.||||.++.... ..++|.+|+.++++++|||||+++|+|.+++.+++||||++
T Consensus 4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~ 82 (258)
T d1k2pa_ 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA 82 (258)
T ss_dssp CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCT
T ss_pred HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccC
Confidence 57899999999999999999998888999999976543 35689999999999999999999999999999999999999
Q ss_pred CCCHHHHHH
Q 040301 514 NISITIIRR 522 (524)
Q Consensus 514 ~gsL~~~l~ 522 (524)
+|+|.+++.
T Consensus 83 ~g~l~~~~~ 91 (258)
T d1k2pa_ 83 NGCLLNYLR 91 (258)
T ss_dssp TEEHHHHHH
T ss_pred CCcHHHhhh
Confidence 999999874
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.3e-16 Score=152.29 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=83.0
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
...++|+..+.||+|+||+||+|+. .+|+.||+|+++... ....+.+.+|+.+|++++|||||+++++|.+++..|+|
T Consensus 3 l~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iV 82 (322)
T d1s9ja_ 3 LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC 82 (322)
T ss_dssp CCGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 3457899999999999999999996 578999999997543 34467899999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++++
T Consensus 83 mEy~~gg~L~~~l~~ 97 (322)
T d1s9ja_ 83 MEHMDGGSLDQVLKK 97 (322)
T ss_dssp EECCTTEEHHHHHHH
T ss_pred EEcCCCCcHHHHHhh
Confidence 999999999999864
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.5e-16 Score=146.08 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=78.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~~l 507 (524)
.++|+..+.||+|+||+||+|+. .+|+.||||.++... ....+.+.+|++++++++|||||++++++.+ ++.+|+
T Consensus 3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~i 82 (269)
T d2java1 3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 82 (269)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEE
T ss_pred chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEE
Confidence 36899999999999999999996 578999999997543 3456779999999999999999999999965 456899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++++
T Consensus 83 vmEy~~~g~L~~~i~~ 98 (269)
T d2java1 83 VMEYCEGGDLASVITK 98 (269)
T ss_dssp EEECCTTEEHHHHHHH
T ss_pred EEecCCCCcHHHHHHh
Confidence 9999999999999853
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.6e-16 Score=150.26 Aligned_cols=92 Identities=21% Similarity=0.177 Sum_probs=76.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
..+.|+..+.||+|+||+||+|+. .+++.||||.+.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 7 i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvm 86 (307)
T d1a06a_ 7 IRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIM 86 (307)
T ss_dssp GGGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 445699999999999999999997 468999999997544 233466889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||+||+|.++|++
T Consensus 87 E~~~gg~L~~~l~~ 100 (307)
T d1a06a_ 87 QLVSGGELFDRIVE 100 (307)
T ss_dssp CCCCSCBHHHHHHT
T ss_pred eccCCCcHHHhhhc
Confidence 99999999999864
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.8e-16 Score=148.49 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=81.5
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
+.|+..+.||+|+||.||+|+. .+++.||||+++.......+.|.+|++++++++|||||++++++.+++..|+|||||
T Consensus 12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~ 91 (288)
T d2jfla1 12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC 91 (288)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence 4688899999999999999996 578999999998665556678999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++.+
T Consensus 92 ~~g~L~~~~~~ 102 (288)
T d2jfla1 92 AGGAVDAVMLE 102 (288)
T ss_dssp TTEEHHHHHHH
T ss_pred CCCcHHHHHHh
Confidence 99999998753
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2e-16 Score=147.28 Aligned_cols=94 Identities=18% Similarity=0.292 Sum_probs=80.8
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
++++...++|+..+.||+|+||.||+|.+++++.||||+++.... ..++|.+|++++++++|||||+++|++. ++..+
T Consensus 6 ~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~ 83 (272)
T d1qpca_ 6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIY 83 (272)
T ss_dssp CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred CCeecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC-CHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeE
Confidence 345555678999999999999999999998888999999975432 3567999999999999999999999875 45689
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+|||||++|+|.++++
T Consensus 84 iv~Ey~~~g~L~~~~~ 99 (272)
T d1qpca_ 84 IITEYMENGSLVDFLK 99 (272)
T ss_dssp EEEECCTTCBHHHHTT
T ss_pred EEEEeCCCCcHHHHHh
Confidence 9999999999998764
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.5e-16 Score=146.63 Aligned_cols=90 Identities=19% Similarity=0.194 Sum_probs=80.4
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc------hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL------ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~------~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
+.|+..+.||+|+||+||+|+. .+|+.||||++.... ....+.|.+|+++|++++|||||++++++.+++..|
T Consensus 10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ 89 (293)
T d1jksa_ 10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 89 (293)
T ss_dssp GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence 5699999999999999999997 578999999996532 123578999999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|||||++|+|.++|++
T Consensus 90 iv~E~~~gg~L~~~i~~ 106 (293)
T d1jksa_ 90 LILELVAGGELFDFLAE 106 (293)
T ss_dssp EEEECCCSCBHHHHHHH
T ss_pred EEEEcCCCccccchhcc
Confidence 99999999999999864
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=3.9e-16 Score=147.22 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=76.3
Q ss_pred ccccccCcccCCCCceEEEEEeC-CC---CEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DW---TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
++|+..+.||+|+||+||+|.+. ++ ..||||.+.... ....++|.+|+++|++++|||||+++|+|.+++..++|
T Consensus 26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv 105 (299)
T d1jpaa_ 26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMII 105 (299)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence 34566789999999999999963 33 258999986543 45567899999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++++
T Consensus 106 ~Ey~~~g~L~~~~~~ 120 (299)
T d1jpaa_ 106 TEFMENGSLDSFLRQ 120 (299)
T ss_dssp EECCTTEEHHHHHHT
T ss_pred EEecCCCcceeeecc
Confidence 999999999998864
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.1e-16 Score=148.55 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=77.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++.+++..|+||||
T Consensus 5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy 84 (271)
T d1nvra_ 5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 84 (271)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence 5799999999999999999997 578999999997543 33456789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
|++|+|.++|++
T Consensus 85 ~~gg~L~~~l~~ 96 (271)
T d1nvra_ 85 CSGGELFDRIEP 96 (271)
T ss_dssp CTTEEGGGGSBT
T ss_pred cCCCcHHHHHhc
Confidence 999999998753
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.5e-16 Score=143.71 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=80.4
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||+||+|+. .+++.||+|++.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm 85 (263)
T d2j4za1 6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL 85 (263)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence 4689999999999999999997 468899999997543 233567899999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.+++++
T Consensus 86 Ey~~~g~L~~~l~~ 99 (263)
T d2j4za1 86 EYAPLGTVYRELQK 99 (263)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred eecCCCcHHHHHhh
Confidence 99999999999864
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.61 E-value=5.2e-16 Score=149.38 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=82.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|++.+.||+|+||.||+|+. .+|+.||||++........+.+.+|++++++++|||||++++++.+++.+|+||||
T Consensus 25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~ 104 (350)
T d1koaa2 25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 104 (350)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence 35799999999999999999996 57899999999776666677899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
|++|+|.+++.
T Consensus 105 ~~gg~L~~~l~ 115 (350)
T d1koaa2 105 MSGGELFEKVA 115 (350)
T ss_dssp CCSCBHHHHHT
T ss_pred CCCCCHHHHHH
Confidence 99999999984
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=5.3e-16 Score=145.18 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=80.5
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||+||+|.. .+++.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm 87 (288)
T d1uu3a_ 8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 87 (288)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence 5799999999999999999997 578999999997543 233567999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.+++++
T Consensus 88 Ey~~gg~L~~~~~~ 101 (288)
T d1uu3a_ 88 SYAKNGELLKYIRK 101 (288)
T ss_dssp CCCTTEEHHHHHHH
T ss_pred EccCCCCHHHhhhc
Confidence 99999999998864
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=5e-16 Score=145.62 Aligned_cols=126 Identities=12% Similarity=0.156 Sum_probs=68.4
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC-CChhHhcCcc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI-LPPVIGNFSA 101 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~ 101 (524)
+.||++++.+.......+.. ..+..+.+++..+.... .......+|++||+++|.+... ++..+...+
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~---------~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~- 71 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL---------AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS- 71 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC---------CSCCCCBCCCEEECTTCEECHHHHHHHHTTBC-
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch---------hhhccCCCCCEEECCCCccCHHHHHHHHHhCC-
Confidence 46888888775322222211 13556666665554321 1223345788888888877643 233344444
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccC-cCccc-CCccccCCCCCCeEecccC
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNN-DLNGT-ISPTMGRLKQLRGLSLKYN 159 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n 159 (524)
+|++|++.+|.+++..+..++.+++|++|++++| .++.. +...+..+++|++|+++++
T Consensus 72 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c 131 (284)
T d2astb2 72 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131 (284)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence 6666666666666555556666666667766664 33321 1111234566666666654
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=8.9e-16 Score=146.17 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=80.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|++.+.||+|+||+||+|.. .+++.||||.++.... ....+.+|+++|+.++|||||++++++.+++.+|+||||
T Consensus 4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~ 82 (321)
T d1tkia_ 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence 35789999999999999999997 4688999999976543 345688999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
|+||+|.++|++
T Consensus 83 ~~gg~L~~~i~~ 94 (321)
T d1tkia_ 83 ISGLDIFERINT 94 (321)
T ss_dssp CCCCBHHHHHTS
T ss_pred CCCCcHHHHHHh
Confidence 999999999864
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.59 E-value=7.9e-16 Score=148.21 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=81.5
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
+.|+..+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|++++++++|||||++++++.+++.+|+|||||
T Consensus 29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~ 108 (352)
T d1koba_ 29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 108 (352)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence 5699999999999999999996 578999999998766556678899999999999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 040301 513 LNISITIIRR 522 (524)
Q Consensus 513 ~~gsL~~~l~ 522 (524)
++|+|.+++.
T Consensus 109 ~gg~L~~~~~ 118 (352)
T d1koba_ 109 SGGELFDRIA 118 (352)
T ss_dssp CCCBHHHHTT
T ss_pred CCChHHHHHH
Confidence 9999998874
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.2e-15 Score=129.68 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=55.6
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.++++|||++|+|+ .++..+..+++|+.|+|++|+|+.+ +.+..+++|++|++++|.++...+..+..+
T Consensus 18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l----------~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l 86 (162)
T d1a9na_ 18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL----------DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 86 (162)
T ss_dssp TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE----------CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc----------CCcccCcchhhhhcccccccCCCccccccc
Confidence 45666666666665 3444455566666666666666554 234555666666666666654444444444
Q ss_pred cccccEEEeccCcccccC-CccccCCCCCCeEEcccCcCc
Q 040301 100 SASFQNFYAFNCKLKGNI-PQEIGNLRGLTLLSLFNNDLN 138 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 138 (524)
+ +|++|++++|++.... ...+..+++|++|++++|.++
T Consensus 87 ~-~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 87 P-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp T-TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred c-ccccceeccccccccccccccccccccchhhcCCCccc
Confidence 4 4555555555444211 123444444444444444443
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=7.3e-16 Score=143.45 Aligned_cols=93 Identities=25% Similarity=0.373 Sum_probs=79.1
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
+|+...++|+..+.||+|+||+||+|++. ..||||+++... ....+.|.+|++++++++|||||+++|++. ++..
T Consensus 2 dwei~~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~~ 78 (276)
T d1uwha_ 2 DWEIPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQL 78 (276)
T ss_dssp CCBCCTTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSC
T ss_pred CcccccccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccEE
Confidence 34455678999999999999999999864 369999996432 445678999999999999999999999875 4578
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 79 ~lv~Ey~~~g~L~~~l~~ 96 (276)
T d1uwha_ 79 AIVTQWCEGSSLYHHLHI 96 (276)
T ss_dssp EEEEECCCEEEHHHHHHT
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 999999999999999864
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.58 E-value=1.1e-16 Score=154.83 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=57.0
Q ss_pred CCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC---CChhHhcCcccccEEEeccCc
Q 040301 36 IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI---LPPVIGNFSASFQNFYAFNCK 112 (524)
Q Consensus 36 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~~L~~L~l~~n~ 112 (524)
+...+.+...|++|+|++|.+.... ...+...+...++|+.|+++++..... .+..+..
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~----~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-------------- 84 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEA----ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL-------------- 84 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHH----HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH--------------
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHH----HHHHHHHHHhCCCCCEEECCCCcccccccccchHHHH--------------
Confidence 4455666777888888888775421 000113456677788888877655422 1211111
Q ss_pred ccccCCccccCCCCCCeEEcccCcCcccC----CccccCCCCCCeEecccCccc
Q 040301 113 LKGNIPQEIGNLRGLTLLSLFNNDLNGTI----SPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 113 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~ 162 (524)
+...+...++|+.|++++|.++... ...+..+++|++|++++|.++
T Consensus 85 ----l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 134 (344)
T d2ca6a1 85 ----LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 134 (344)
T ss_dssp ----HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred ----HHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence 1223444566667777666665321 222334566666666666554
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=9.7e-16 Score=143.15 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=80.9
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
++++...++|+..+.||+|+||+||+|...+++.||||+++... ...+.|.+|+.++++++|||||+++|+|. ++..+
T Consensus 10 ~~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~ 87 (285)
T d1fmka3 10 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIY 87 (285)
T ss_dssp TCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred cceEcCHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeE
Confidence 34445567899999999999999999999877889999997543 24577999999999999999999999985 56789
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+|||||++|+|.++++
T Consensus 88 lv~Ey~~~g~l~~~~~ 103 (285)
T d1fmka3 88 IVTEYMSKGSLLDFLK 103 (285)
T ss_dssp EEECCCTTCBHHHHHS
T ss_pred EEEEecCCCchhhhhh
Confidence 9999999999998874
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.1e-15 Score=142.75 Aligned_cols=90 Identities=18% Similarity=0.287 Sum_probs=75.0
Q ss_pred hccccccC-cccCCCCceEEEEEeC---CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECN-LLGTGSFGSVYKGTIS---DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~-~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.++|...+ .||+|+||.||+|.+. ++..||||.++... ....++|.+|+++|++++|||||+++|+|.+ +..|+
T Consensus 7 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~l 85 (285)
T d1u59a_ 7 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALML 85 (285)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEE
T ss_pred ccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEE
Confidence 34566666 4999999999999863 34579999997544 4456789999999999999999999999975 56899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++++
T Consensus 86 vmE~~~~g~L~~~l~~ 101 (285)
T d1u59a_ 86 VMEMAGGGPLHKFLVG 101 (285)
T ss_dssp EEECCTTEEHHHHHTT
T ss_pred EEEeCCCCcHHHHhhc
Confidence 9999999999999753
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=8.7e-16 Score=141.71 Aligned_cols=90 Identities=21% Similarity=0.263 Sum_probs=75.9
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc-CCcceEEE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN-PDFKALMW 509 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~~~~~lv~ 509 (524)
...++|+..+.||+|+||.||+|.+ .|+.||||+++... ..++|.+|++++++++|||||+++|+|.+ .+.+++||
T Consensus 4 i~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ 80 (262)
T d1byga_ 4 LNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT 80 (262)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEE
T ss_pred cCHHHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEE
Confidence 3456788889999999999999998 46789999996543 45679999999999999999999999965 45689999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.++|++
T Consensus 81 ey~~~g~L~~~l~~ 94 (262)
T d1byga_ 81 EYMAKGSLVDYLRS 94 (262)
T ss_dssp CCCTTEEHHHHHHH
T ss_pred eccCCCCHHHHHHh
Confidence 99999999999854
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.7e-15 Score=138.94 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=75.3
Q ss_pred ccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCcceEE
Q 040301 436 FNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDFKALM 508 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~~lv 508 (524)
|+..+.||+|+||+||+|+. .+++.||+|.+.... ....+.|.+|+++|++++|||||++++++.+ +..+|+|
T Consensus 11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~iv 90 (270)
T d1t4ha_ 11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 90 (270)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEE
Confidence 35566899999999999997 468899999997543 4456789999999999999999999999865 3468999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++++
T Consensus 91 mE~~~~g~L~~~l~~ 105 (270)
T d1t4ha_ 91 TELMTSGTLKTYLKR 105 (270)
T ss_dssp EECCCSCBHHHHHHH
T ss_pred EeCCCCCcHHHHHhc
Confidence 999999999999864
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.2e-15 Score=142.91 Aligned_cols=220 Identities=23% Similarity=0.229 Sum_probs=117.9
Q ss_pred CEEEccCCCCCCCCChhHhcCc-ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCccc-CCccccCCCCCCeEec
Q 040301 79 KALSLGSNPLGGILPPVIGNFS-ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT-ISPTMGRLKQLRGLSL 156 (524)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L 156 (524)
+.||++++.+.. +.+.++. .....+.+..+.+.... .......+|++|++++|.++.. +...+..+++|++|++
T Consensus 3 ~~lDLs~~~l~~---~~l~~l~~~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L 78 (284)
T d2astb2 3 QTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78 (284)
T ss_dssp SEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred CEEECCCCCCCc---hHHHHHHhccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence 366777666542 2222221 13444555544443222 2223445677777777766533 2334566777777777
Q ss_pred ccCcccccCCccccCCCCCCEEEccCC-ccccc-CCccccCCCCCCEEEccCCc-CCCc-cChhcc-CCCCCCEEEcCCC
Q 040301 157 KYNNLEGSIPYDLCHLKLMYGIRLTGN-KLSGH-IPPCLASLTSLRELHLGSNK-LTSS-IPSSLW-SLEYILMINLSSN 231 (524)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~-~l~~L~~L~L~~n 231 (524)
++|.+++..+..+..+++|+.|+++++ .+++. +......+++|++|+++++. ++.. +...+. ..+.|+.|+++++
T Consensus 79 ~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~ 158 (284)
T d2astb2 79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158 (284)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence 777776666666666777777777764 33321 11123456677777777643 3211 112222 2356777777654
Q ss_pred c--Cccc-CCcCccCCCCCCEEEcCCCc-Ccccc-ccccccCCCCEEEccCC-cccCCCcccccCCCCCCEEeCCCC
Q 040301 232 S--LNDS-LPSNIQTLKVLRVLDLSRNQ-LSGDI-STIGALVDLETLSLASN-QFQGPIPESVGSLISLESLDLSGN 302 (524)
Q Consensus 232 ~--l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 302 (524)
. +++. +...+..+++|++|++++|. +++.. ..+..+++|++|++++| .+++.....++.+++|+.|+++++
T Consensus 159 ~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 2 2211 22223455667777776643 44322 45556666777777664 455444455666667777777665
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.56 E-value=2.7e-15 Score=139.51 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=79.4
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---------hHHHHHHHHHHHHHhcCC-CCCccceeEEEEcC
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---------ERAFRSFDSECEVLRNVC-HRNLIKILSSCSNP 502 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---------~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~ 502 (524)
++|+..+.||+|+||+||+|+. .+++.||||+++... ....+.+.+|+.++++++ |||||++++++.++
T Consensus 3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 82 (277)
T d1phka_ 3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN 82 (277)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence 5789999999999999999996 578999999996532 122456889999999997 99999999999999
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.+|||||||++|+|.++|++
T Consensus 83 ~~~~ivmE~~~~g~L~~~l~~ 103 (277)
T d1phka_ 83 TFFFLVFDLMKKGELFDYLTE 103 (277)
T ss_dssp SEEEEEEECCTTCBHHHHHHH
T ss_pred cceEEEEEcCCCchHHHHHHh
Confidence 999999999999999999964
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=2.3e-15 Score=142.31 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=78.5
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
..|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+++|++++|||||++++++.+++..|+||
T Consensus 15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~ 94 (309)
T d1u5ra_ 15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 94 (309)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence 4588999999999999999996 578899999997543 334567999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
|||++|++..++.
T Consensus 95 E~~~~g~l~~~~~ 107 (309)
T d1u5ra_ 95 EYCLGSASDLLEV 107 (309)
T ss_dssp ECCSEEHHHHHHH
T ss_pred EecCCCchHHHHH
Confidence 9999999987654
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=3.6e-15 Score=140.90 Aligned_cols=99 Identities=18% Similarity=0.360 Sum_probs=86.9
Q ss_pred chhhhhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeE
Q 040301 425 SYLDIQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILS 497 (524)
Q Consensus 425 ~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~ 497 (524)
.+.+++...++|+..+.||+|+||.||+|++. +++.||||+++... .+..++|.+|++++++++||||+++++
T Consensus 4 ~~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~ 83 (301)
T d1lufa_ 4 KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLG 83 (301)
T ss_dssp HHHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred chhhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCccccee
Confidence 35667778889999999999999999999852 35789999997544 345678999999999999999999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+|.+.+..++||||+++|+|.++++.
T Consensus 84 ~~~~~~~~~~v~e~~~~g~L~~~l~~ 109 (301)
T d1lufa_ 84 VCAVGKPMCLLFEYMAYGDLNEFLRS 109 (301)
T ss_dssp EECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred eeccCCceEEEEEecCCCcHHHHHHh
Confidence 99999999999999999999999864
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.9e-15 Score=127.31 Aligned_cols=129 Identities=18% Similarity=0.111 Sum_probs=73.5
Q ss_pred ccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCC
Q 040301 39 TFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIP 118 (524)
Q Consensus 39 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 118 (524)
.|.+..+|++|+|++|+|+.++ ..+..+++|++|||++|.|... +
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~i~---------~~~~~l~~L~~L~Ls~N~i~~l-~------------------------- 57 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPVIE---------NLGATLDQFDAIDFSDNEIRKL-D------------------------- 57 (162)
T ss_dssp EEECTTSCEEEECTTSCCCSCC---------CGGGGTTCCSEEECCSSCCCEE-C-------------------------
T ss_pred hccCcCcCcEEECCCCCCCccC---------ccccccccCCEEECCCCCCCcc-C-------------------------
Confidence 3556667777777777777663 3345566777777777776632 1
Q ss_pred ccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCC-ccccCCCCCCEEEccCCcccccC---Ccccc
Q 040301 119 QEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIP-YDLCHLKLMYGIRLTGNKLSGHI---PPCLA 194 (524)
Q Consensus 119 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~ 194 (524)
.|..+++|++|++++|+++...+..+..+++|++|++++|.++.... ..+..+++|+.|++++|.+.... +..+.
T Consensus 58 -~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~ 136 (162)
T d1a9na_ 58 -GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 136 (162)
T ss_dssp -CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHH
T ss_pred -CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHH
Confidence 13445555555555555554444444455555566665555552211 24555666666666666654221 12355
Q ss_pred CCCCCCEEE
Q 040301 195 SLTSLRELH 203 (524)
Q Consensus 195 ~l~~L~~L~ 203 (524)
.+++|++||
T Consensus 137 ~lp~L~~LD 145 (162)
T d1a9na_ 137 KVPQVRVLD 145 (162)
T ss_dssp HCTTCSEET
T ss_pred HCCCcCeeC
Confidence 566777665
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4e-15 Score=142.23 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=81.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|+.+|++++|||||++++++.+++.+|+|
T Consensus 4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv 83 (337)
T d1o6la_ 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence 35799999999999999999996 578999999997543 23457789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++++
T Consensus 84 ~ey~~gg~L~~~~~~ 98 (337)
T d1o6la_ 84 MEYANGGELFFHLSR 98 (337)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred eeccCCCchhhhhhc
Confidence 999999999999864
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.54 E-value=1.8e-15 Score=146.21 Aligned_cols=210 Identities=16% Similarity=0.196 Sum_probs=152.9
Q ss_pred ccCCCCCCeEEcccCcCccc----------CCccccCCCCCCeEecccCccccc----CCccccCCCCCCEEEccCCccc
Q 040301 121 IGNLRGLTLLSLFNNDLNGT----------ISPTMGRLKQLRGLSLKYNNLEGS----IPYDLCHLKLMYGIRLTGNKLS 186 (524)
Q Consensus 121 ~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~ 186 (524)
+...++|+.|+++++..... +...+..+++|++|++++|.++.. +...+...++|+.|++++|.+.
T Consensus 55 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 134 (344)
T d2ca6a1 55 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 134 (344)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence 45667888888877654321 123456688999999999998753 3345567899999999999875
Q ss_pred ccCCc-------------cccCCCCCCEEEccCCcCCCc----cChhccCCCCCCEEEcCCCcCccc-----CCcCccCC
Q 040301 187 GHIPP-------------CLASLTSLRELHLGSNKLTSS----IPSSLWSLEYILMINLSSNSLNDS-----LPSNIQTL 244 (524)
Q Consensus 187 ~~~~~-------------~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l 244 (524)
..-.. .....+.|+.+++++|.+... +...+...+.|+.|++++|.+... +...+..+
T Consensus 135 ~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~ 214 (344)
T d2ca6a1 135 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 214 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred ccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcch
Confidence 32111 123567899999999988633 334566788999999999998642 34456788
Q ss_pred CCCCEEEcCCCcCccc-----cccccccCCCCEEEccCCcccCCCccc----cc--CCCCCCEEeCCCCcCCCCC----c
Q 040301 245 KVLRVLDLSRNQLSGD-----ISTIGALVDLETLSLASNQFQGPIPES----VG--SLISLESLDLSGNNLSGKI----P 309 (524)
Q Consensus 245 ~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~--~l~~L~~L~l~~N~l~~~~----~ 309 (524)
++|+.|++++|.+... ...+..+++|++|+|++|++.+..... +. ..++|+.|++++|.+.... .
T Consensus 215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~ 294 (344)
T d2ca6a1 215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 294 (344)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHH
Confidence 9999999999998643 245678899999999999988643222 32 2467999999999987432 2
Q ss_pred cccc-CCCCCCeEEccCCcCcc
Q 040301 310 KSLE-TLSHLKQFNASHNRLEG 330 (524)
Q Consensus 310 ~~~~-~l~~L~~l~l~~n~l~~ 330 (524)
..+. +.+.|+.+++++|.+..
T Consensus 295 ~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 295 TVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHccCCCCCEEECCCCcCCC
Confidence 3342 57889999999999854
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=4.6e-15 Score=140.74 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=80.4
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+.+++.++|||||++++++.+++..|+||
T Consensus 4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm 83 (316)
T d1fota_ 4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 83 (316)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence 5799999999999999999996 568999999997543 234577899999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||+||++.+++++
T Consensus 84 E~~~gg~l~~~~~~ 97 (316)
T d1fota_ 84 DYIEGGELFSLLRK 97 (316)
T ss_dssp CCCCSCBHHHHHHH
T ss_pred eecCCccccccccc
Confidence 99999999988754
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.3e-15 Score=138.32 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=69.4
Q ss_pred CcccCCCCceEEEEEeC---CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTIS---DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||+||+|.+. .++.||||+++... ....++|.+|+++|++++|||||+++|+|.+ +..++|||||++
T Consensus 13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~ 91 (277)
T d1xbba_ 13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 91 (277)
T ss_dssp EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence 47999999999999863 34679999996433 3346789999999999999999999999965 457899999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 92 g~L~~~l~~ 100 (277)
T d1xbba_ 92 GPLNKYLQQ 100 (277)
T ss_dssp EEHHHHHHH
T ss_pred CcHHHHHhh
Confidence 999999864
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.7e-14 Score=116.52 Aligned_cols=102 Identities=26% Similarity=0.285 Sum_probs=61.9
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.|||++|+++ .++ .++++++|++|++++|+++.++ ..++.+++|++|++++|.+++. | .
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp---------~~~~~l~~L~~L~l~~N~i~~l-~-~------- 60 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALP---------PALAALRCLEVLQASDNALENV-D-G------- 60 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCC---------GGGGGCTTCCEEECCSSCCCCC-G-G-------
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcch---------hhhhhhhccccccccccccccc-C-c-------
Confidence 46777777777 444 3777777777777777776543 4566677777777777777632 2 2
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccC-CccccCCCCCCeEecccCccc
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTI-SPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~ 162 (524)
+.++++|+.|++++|++.... ...+..+++|+.|++++|.++
T Consensus 61 ------------------~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 61 ------------------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp ------------------GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ------------------cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 344555555555555555332 134455555555555555554
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.8e-15 Score=141.12 Aligned_cols=95 Identities=24% Similarity=0.317 Sum_probs=82.3
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEE
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCS 500 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~ 500 (524)
+|+...++|+..+.||+|+||.||+|++. +++.||||+++... .+....|.+|++++++++|||||+++|+|.
T Consensus 14 ~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~ 93 (308)
T d1p4oa_ 14 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS 93 (308)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred ceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEe
Confidence 45555678899999999999999999862 35689999997543 445667999999999999999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHH
Q 040301 501 NPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
.++..++|||||++|+|.++++
T Consensus 94 ~~~~~~lv~e~~~~g~l~~~~~ 115 (308)
T d1p4oa_ 94 QGQPTLVIMELMTRGDLKSYLR 115 (308)
T ss_dssp SSSSCEEEEECCTTCBHHHHHH
T ss_pred cCCceeEEEeecCCCCHHHHHH
Confidence 9999999999999999999885
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=2.4e-14 Score=115.52 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=84.9
Q ss_pred EEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccC
Q 040301 80 ALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYN 159 (524)
Q Consensus 80 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 159 (524)
+|||++|+++.. + .+..+. +|++|++++|.++ .+|..|+.+++|+.|++++|.++.. | .+..+++|++|++++|
T Consensus 2 ~L~Ls~n~l~~l-~-~l~~l~-~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 2 VLHLAHKDLTVL-C-HLEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp EEECTTSCCSSC-C-CGGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred EEEcCCCCCCCC-c-ccccCC-CCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 455555555522 2 244554 5666666666665 4566788889999999999999854 3 5899999999999999
Q ss_pred cccccC-CccccCCCCCCEEEccCCcccccC---CccccCCCCCCEE
Q 040301 160 NLEGSI-PYDLCHLKLMYGIRLTGNKLSGHI---PPCLASLTSLREL 202 (524)
Q Consensus 160 ~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L 202 (524)
+++... ...+..+++|+.|++++|.+.... ......+|+|+.|
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 998543 257889999999999999997432 2234457888776
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.6e-15 Score=140.65 Aligned_cols=90 Identities=27% Similarity=0.405 Sum_probs=75.1
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCC--EEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWT--NVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~--~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv 508 (524)
++|+..+.||+|+||.||+|++. ++. .||||+++... ....++|.+|+++|+++ +|||||+++|+|.+++..++|
T Consensus 10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV 89 (309)
T d1fvra_ 10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 89 (309)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence 56778889999999999999973 444 47888886443 34567899999999998 799999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.++|++
T Consensus 90 ~ey~~~g~L~~~l~~ 104 (309)
T d1fvra_ 90 IEYAPHGNLLDFLRK 104 (309)
T ss_dssp ECCCTTCBHHHHHHT
T ss_pred EEecCCCcHHHHHhh
Confidence 999999999999964
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5.6e-15 Score=140.19 Aligned_cols=95 Identities=20% Similarity=0.247 Sum_probs=82.6
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEE
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCS 500 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~ 500 (524)
++...++|+..+.||+|+||.||+|++ .+++.||||+++... .....+|.+|+.+++++ +|||||+++|+|.
T Consensus 18 ~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~ 97 (311)
T d1t46a_ 18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT 97 (311)
T ss_dssp GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred ccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEe
Confidence 445567899999999999999999985 345689999997644 44567899999999999 6999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++..++|||||++|+|.+++++
T Consensus 98 ~~~~~~lvmE~~~~g~l~~~l~~ 120 (311)
T d1t46a_ 98 IGGPTLVITEYCCYGDLLNFLRR 120 (311)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHH
T ss_pred eCCEEEEEEEcCCCCCHHHHHHh
Confidence 99999999999999999999864
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=8.1e-15 Score=139.27 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=78.0
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHh-cCCCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLR-NVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~-~l~H~niv~l~~~~~~~~~~~lv 508 (524)
++|+..+.||+|+||+||+|+. .+++.||||+++... ....+.+.+|+.++. .++|||||++++++.+++..|||
T Consensus 2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv 81 (320)
T d1xjda_ 2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV 81 (320)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence 5799999999999999999997 478999999997543 233556778888765 68999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++++
T Consensus 82 mEy~~~g~L~~~i~~ 96 (320)
T d1xjda_ 82 MEYLNGGDLMYHIQS 96 (320)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EeecCCCcHHHHhhc
Confidence 999999999999864
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9.1e-15 Score=136.71 Aligned_cols=91 Identities=23% Similarity=0.339 Sum_probs=78.2
Q ss_pred hccccccCcccCCCCceEEEEEeCC-C----CEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISD-W----TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~-~----~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
.++|+..+.||+|+||.||+|.+.. + ..||||++.... .....+|.+|++++++++|||||+++|+|.+.+..+
T Consensus 6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~ 85 (283)
T d1mqba_ 6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 85 (283)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceE
Confidence 3568888999999999999999632 2 369999997544 345567999999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|||||++|++.+++++
T Consensus 86 ~v~e~~~~~~l~~~~~~ 102 (283)
T d1mqba_ 86 IITEYMENGALDKFLRE 102 (283)
T ss_dssp EEEECCTTEEHHHHHHH
T ss_pred EEEEecccCcchhhhhc
Confidence 99999999999988754
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=7.4e-15 Score=140.17 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=77.9
Q ss_pred hhhhccccccCcccCCCCceEEEEEeC-CC-----CEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEc
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTIS-DW-----TNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSN 501 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~-----~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 501 (524)
+...++|+..+.||+|+||+||+|+.. .+ ..||||.+.... ....+.|.+|+.+++++ +|||||+++++|.+
T Consensus 33 ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~ 112 (325)
T d1rjba_ 33 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL 112 (325)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred cCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEee
Confidence 345578999999999999999999952 22 369999986543 34456799999999998 89999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+..++|||||++|+|.++|++
T Consensus 113 ~~~~~lv~Ey~~~g~L~~~l~~ 134 (325)
T d1rjba_ 113 SGPIYLIFEYCCYGDLLNYLRS 134 (325)
T ss_dssp SSSCEEEEECCTTCBHHHHHHT
T ss_pred CCeEEEEEEcCCCCcHHHHHHh
Confidence 9999999999999999999964
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.50 E-value=1.4e-14 Score=135.04 Aligned_cols=91 Identities=14% Similarity=0.248 Sum_probs=78.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC----c
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----F 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----~ 504 (524)
.++|++.+.||+|+||.||+|+. .+|+.||||.++... ....+.|.+|+++++.++|||||++++++...+ .
T Consensus 6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~ 85 (277)
T d1o6ya_ 6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 85 (277)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence 35699999999999999999996 578999999997543 334567999999999999999999999998754 3
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.|+|||||+||+|.+++++
T Consensus 86 ~~lvmE~~~g~~L~~~~~~ 104 (277)
T d1o6ya_ 86 PYIVMEYVDGVTLRDIVHT 104 (277)
T ss_dssp EEEEEECCCEEEHHHHHHH
T ss_pred EEEEEECCCCCEehhhhcc
Confidence 7999999999999998753
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.4e-14 Score=134.69 Aligned_cols=93 Identities=16% Similarity=0.177 Sum_probs=77.6
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCC----CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISD----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
+...++|+..+.||+|+||.||+|++.. +..||||.++... ....+.|.+|++++++++|||||+++|++. ++.
T Consensus 3 ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~ 81 (273)
T d1mp8a_ 3 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENP 81 (273)
T ss_dssp BCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSS
T ss_pred CcCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCe
Confidence 3445689999999999999999998632 3468999886543 445678999999999999999999999995 567
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.|+|||||++|++.+++.+
T Consensus 82 ~~iv~E~~~~g~l~~~~~~ 100 (273)
T d1mp8a_ 82 VWIIMELCTLGELRSFLQV 100 (273)
T ss_dssp CEEEEECCTTEEHHHHHHH
T ss_pred EEEEEEeccCCcHHhhhhc
Confidence 9999999999999998753
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.47 E-value=3.4e-14 Score=137.39 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=75.6
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHH---HHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFD---SECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~---~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
++|++.+.||+|+||.||+|+. .+|+.||||++.... ......+. +|+++++.++|||||++++++.+++..|
T Consensus 4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ 83 (364)
T d1omwa3 4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 83 (364)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence 5799999999999999999996 578999999996533 11223343 4467788889999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|||||++|+|.++|++
T Consensus 84 ivmE~~~gg~L~~~l~~ 100 (364)
T d1omwa3 84 FILDLMNGGDLHYHLSQ 100 (364)
T ss_dssp EEECCCCSCBHHHHHHH
T ss_pred EEEEecCCCcHHHHHHh
Confidence 99999999999999864
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.46 E-value=8.6e-16 Score=135.38 Aligned_cols=130 Identities=21% Similarity=0.246 Sum_probs=92.2
Q ss_pred CCccEEEccCC--cccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 20 QIYWVMDLSSN--SFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 20 ~~l~~Ldls~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
...+.++++++ .++ .++.++..+++|++|+|++|+|+.+ ..+.++++|++|+|++|.++. +|..+.
T Consensus 23 ~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i----------~~l~~l~~L~~L~Ls~N~i~~-i~~~~~ 90 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI----------SSLSGMENLRILSLGRNLIKK-IENLDA 90 (198)
T ss_dssp TTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC----------CCHHHHTTCCEEECCEEEECS-CSSHHH
T ss_pred cccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc----------ccccCCccccChhhccccccc-cccccc
Confidence 34566677664 344 5667788889999999999988875 346677889999999998874 454444
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCC-ccccCCCCCCeEecccCccccc
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS-PTMGRLKQLRGLSLKYNNLEGS 164 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~ 164 (524)
... +|+.|++++|+++.. ..+..+++|+.|++++|+++.... ..+..+++|+.|++++|.+...
T Consensus 91 ~~~-~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 91 VAD-TLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHH-HCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred ccc-ccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 444 788888888887743 346777788888888887764322 3567777777777777777643
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5.6e-14 Score=132.53 Aligned_cols=89 Identities=19% Similarity=0.172 Sum_probs=71.3
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC----cceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----FKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----~~~lv 508 (524)
+++|...+.||+|+||.||+|++ +|+.||||+++.... ....+.+|+..++.++|||||+++|+|.+++ .+|+|
T Consensus 2 ~~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~-~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv 79 (303)
T d1vjya_ 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV 79 (303)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred CcEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEE
Confidence 35678888999999999999997 678999999965432 1222334555566789999999999998754 57999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.++|++
T Consensus 80 ~Ey~~~g~L~~~l~~ 94 (303)
T d1vjya_ 80 SDYHEHGSLFDYLNR 94 (303)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EecccCCCHHHHHhc
Confidence 999999999999975
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=6e-14 Score=134.83 Aligned_cols=90 Identities=23% Similarity=0.225 Sum_probs=80.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+++|+.++|||||++++++.+....++||
T Consensus 41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~ 120 (350)
T d1rdqe_ 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence 5799999999999999999997 578999999997533 233567899999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+.+|+|.+++.+
T Consensus 121 e~~~~g~l~~~l~~ 134 (350)
T d1rdqe_ 121 EYVAGGEMFSHLRR 134 (350)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred ccccccchhhhHhh
Confidence 99999999998854
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.5e-14 Score=130.97 Aligned_cols=88 Identities=24% Similarity=0.282 Sum_probs=67.9
Q ss_pred ccccccCcccCCCCceEEEEEe--CCC--CEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI--SDW--TNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~--~~~--~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
++|+..+.||+|+||+||+|++ .++ ..||||+++... .+..++|.+|++++++++|||||+++|+|.+ +..+
T Consensus 8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~ 86 (273)
T d1u46a_ 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK 86 (273)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence 5789999999999999999985 333 368999986532 3446789999999999999999999999965 5789
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+|||||++|++.+++.
T Consensus 87 lv~e~~~~~~l~~~~~ 102 (273)
T d1u46a_ 87 MVTELAPLGSLLDRLR 102 (273)
T ss_dssp EEEECCTTCBHHHHHH
T ss_pred eeeeeecCcchhhhhh
Confidence 9999999999998874
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.2e-14 Score=133.22 Aligned_cols=95 Identities=21% Similarity=0.304 Sum_probs=75.7
Q ss_pred hhhhhccccccCcccCCCCceEEEEEeC--------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEE
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTIS--------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSS 498 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~ 498 (524)
+....++|+..+.||+|+||.||+|+.. ++..||||+++... .....++.+|+..+.++ +|||||+++++
T Consensus 8 ~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~ 87 (299)
T d1fgka_ 8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGA 87 (299)
T ss_dssp TBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred CcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccc
Confidence 3345578999999999999999999851 22479999997654 34567899999999888 89999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
|.+++..++|||||++|+|.++|+.
T Consensus 88 ~~~~~~~~~v~e~~~~g~l~~~i~~ 112 (299)
T d1fgka_ 88 CTQDGPLYVIVEYASKGNLREYLQA 112 (299)
T ss_dssp ECSSSSCEEEECCCTTCBHHHHHHT
T ss_pred cccCCeEEEEEEccCCCcHHHHHHh
Confidence 9999999999999999999999964
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=7.4e-14 Score=132.04 Aligned_cols=85 Identities=22% Similarity=0.369 Sum_probs=72.0
Q ss_pred cCcccCCCCceEEEEEeCC--C--CEEEEEEeecc-chHHHHHHHHHHHHHhcCCCCCccceeEEEEc-CCcceEEEccc
Q 040301 439 CNLLGTGSFGSVYKGTISD--W--TNVAIKIFNLQ-LERAFRSFDSECEVLRNVCHRNLIKILSSCSN-PDFKALMWGRL 512 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~--~--~~vavK~~~~~-~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~~~~~lv~e~~ 512 (524)
.++||+|+||+||+|++.+ + ..||||+++.. .....++|.+|+++|++++|||||+++|++.. +...++|||||
T Consensus 32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~ 111 (311)
T d1r0pa_ 32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM 111 (311)
T ss_dssp EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence 4689999999999999733 2 25899999753 45567889999999999999999999999876 45799999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.++++.
T Consensus 112 ~~g~l~~~~~~ 122 (311)
T d1r0pa_ 112 KHGDLRNFIRN 122 (311)
T ss_dssp TTCBHHHHHHC
T ss_pred ecCchhhhhcc
Confidence 99999998863
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=6.3e-14 Score=132.05 Aligned_cols=87 Identities=23% Similarity=0.345 Sum_probs=73.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+++.+|++++++++|||||++++++.+++..|+|||
T Consensus 2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e 81 (298)
T d1gz8a_ 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 81 (298)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence 5799999999999999999996 578999999996543 2235678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHH
Q 040301 511 RLLNISITIIR 521 (524)
Q Consensus 511 ~~~~gsL~~~l 521 (524)
||.+ ++.+++
T Consensus 82 ~~~~-~~~~~~ 91 (298)
T d1gz8a_ 82 FLHQ-DLKKFM 91 (298)
T ss_dssp CCSE-EHHHHH
T ss_pred ecCC-chhhhh
Confidence 9986 445444
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1e-13 Score=132.45 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=72.2
Q ss_pred hccccccC-cccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhc-CCCCCccceeEEEEc----CCcc
Q 040301 433 TDEFNECN-LLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRN-VCHRNLIKILSSCSN----PDFK 505 (524)
Q Consensus 433 ~~~~~~~~-~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~-l~H~niv~l~~~~~~----~~~~ 505 (524)
.++|.+.. .||+|+||.||+|+. .+++.||||+++.. ..+.+|++++.+ .+|||||+++++|.+ +..+
T Consensus 10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~ 84 (335)
T d2ozaa1 10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 84 (335)
T ss_dssp GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEE
Confidence 35788765 699999999999996 57899999999643 346689998765 489999999999875 4568
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|+|||||+||+|.++|++
T Consensus 85 ~ivmEy~~gg~L~~~i~~ 102 (335)
T d2ozaa1 85 LIVMECLDGGELFSRIQD 102 (335)
T ss_dssp EEEEECCCSEEHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHh
Confidence 999999999999999965
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.41 E-value=7.4e-14 Score=130.82 Aligned_cols=89 Identities=19% Similarity=0.294 Sum_probs=78.0
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.||+|+||.||+|+.++|+.||||+++... ....+.+.+|+.+|++++|||||++++++..++..++++||
T Consensus 2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~ 81 (286)
T d1ob3a_ 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (286)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence 4788999999999999999999889999999996543 22356899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+.++.+..+.+
T Consensus 82 ~~~~~~~~~~~ 92 (286)
T d1ob3a_ 82 LDQDLKKLLDV 92 (286)
T ss_dssp CSEEHHHHHHT
T ss_pred ehhhhHHHHHh
Confidence 99877666554
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.2e-13 Score=129.39 Aligned_cols=89 Identities=26% Similarity=0.349 Sum_probs=72.5
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCC----EEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWT----NVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.+|+..+.||+|+||+||+|.+ .+|+ .||+|++.... .+..++|.+|++++++++|||||+++|+|.++ ..++
T Consensus 9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~ 87 (317)
T d1xkka_ 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL 87 (317)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEE
T ss_pred HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeE
Confidence 4699999999999999999996 3444 58899886533 34567899999999999999999999999865 5778
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
++||+.+|+|.+++++
T Consensus 88 v~e~~~~~~l~~~~~~ 103 (317)
T d1xkka_ 88 ITQLMPFGCLLDYVRE 103 (317)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEEeccCCcccccccc
Confidence 8999999999998754
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.2e-13 Score=130.28 Aligned_cols=83 Identities=27% Similarity=0.348 Sum_probs=68.5
Q ss_pred cCcccCCCCceEEEEEe-CCCCEEEEEEeeccchH-----HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 439 CNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~-----~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.++||+|+||+||+|+. .+|+.||||+++..... ..+.+.+|+.++++++|||||++++++.+++..|+|||||
T Consensus 3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~ 82 (299)
T d1ua2a_ 3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM 82 (299)
T ss_dssp EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence 46899999999999996 56899999999654321 1346889999999999999999999999999999999999
Q ss_pred CCCCHHHHH
Q 040301 513 LNISITIIR 521 (524)
Q Consensus 513 ~~gsL~~~l 521 (524)
++|++..+.
T Consensus 83 ~~~~~~~~~ 91 (299)
T d1ua2a_ 83 ETDLEVIIK 91 (299)
T ss_dssp SEEHHHHHT
T ss_pred cchHHhhhh
Confidence 988776554
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4.5e-13 Score=125.83 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=79.9
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+..+.||+|+||+||+|+. .+++.||||+++... ....+++.+|+.+++.++|||||++++++.+.+..++|+|
T Consensus 2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~ 81 (292)
T d1unla_ 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence 4689999999999999999996 578899999996543 3456789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+.++++..+++.
T Consensus 82 ~~~~~~l~~~~~~ 94 (292)
T d1unla_ 82 FCDQDLKKYFDSC 94 (292)
T ss_dssp CCSEEHHHHHHHT
T ss_pred ecccccccccccc
Confidence 9999998887653
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=6.9e-13 Score=124.93 Aligned_cols=97 Identities=21% Similarity=0.306 Sum_probs=77.0
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSS 498 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~ 498 (524)
..++...++|+..+.||+|+||.||+|++. +++.||||+++... ....+.+.+|+.++.++ +|+|||.++++
T Consensus 6 ~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~ 85 (299)
T d1ywna1 6 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 85 (299)
T ss_dssp HHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred ccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeee
Confidence 445555678999999999999999999852 34679999997543 34567788899888877 68999999999
Q ss_pred EEcC-CcceEEEcccCCCCHHHHHHh
Q 040301 499 CSNP-DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~~-~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.++ ...++|||||++|+|.++|+.
T Consensus 86 ~~~~~~~~~iv~E~~~~g~L~~~l~~ 111 (299)
T d1ywna1 86 CTKPGGPLMVIVEFCKFGNLSTYLRS 111 (299)
T ss_dssp ECSTTSCCEEEEECCTTCBHHHHHHH
T ss_pred eccCCCeEEEEEEecCCCcHHHHHHh
Confidence 8765 468999999999999999864
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.32 E-value=6.5e-13 Score=126.88 Aligned_cols=87 Identities=20% Similarity=0.369 Sum_probs=74.9
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEcC--CcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSNP--DFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~--~~~~lv~ 509 (524)
++|+..+.||+|+||+||+|+. .+++.||||+++... .+++.+|+++|+++. ||||+++++++... ..+++||
T Consensus 35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~ 111 (328)
T d3bqca1 35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 111 (328)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence 5799999999999999999996 578999999997543 356889999999995 99999999999854 5689999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.++.+.
T Consensus 112 e~~~~~~L~~~~~~ 125 (328)
T d3bqca1 112 EHVNNTDFKQLYQT 125 (328)
T ss_dssp ECCCSCBGGGTTTS
T ss_pred eecCCCcHHHHhcC
Confidence 99999999876543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.32 E-value=1.5e-14 Score=127.25 Aligned_cols=85 Identities=33% Similarity=0.377 Sum_probs=32.9
Q ss_pred ccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCC
Q 040301 193 LASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDL 270 (524)
Q Consensus 193 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L 270 (524)
+..+++|+.|++++|.++ .++..+..+++|+.|++++|.++. + +.+..+++|+.|++++|.++... ..+..+++|
T Consensus 66 l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L 142 (198)
T d1m9la_ 66 LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142 (198)
T ss_dssp HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred ccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCcc
Confidence 334444444444444443 222222223334444444444432 1 11333344444444444443322 223344444
Q ss_pred CEEEccCCcc
Q 040301 271 ETLSLASNQF 280 (524)
Q Consensus 271 ~~L~L~~N~l 280 (524)
+.|+|++|++
T Consensus 143 ~~L~L~~N~l 152 (198)
T d1m9la_ 143 EDLLLAGNPL 152 (198)
T ss_dssp SEEEECSSHH
T ss_pred ceeecCCCcc
Confidence 4444444443
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.9e-13 Score=128.55 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=77.7
Q ss_pred ccccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcCCC-CCccceeEEEEcCCc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNVCH-RNLIKILSSCSNPDF 504 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l~H-~niv~l~~~~~~~~~ 504 (524)
++|+..+.||+|+||+||+|.. .+|+.||||.++... ....+.+.+|++++++++| |||+++++++.+...
T Consensus 24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~ 103 (322)
T d1vzoa_ 24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 103 (322)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence 5699999999999999999985 247899999986432 2234668899999999977 899999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++|||||.+|+|.++++.
T Consensus 104 ~~~v~e~~~~~~L~~~i~~ 122 (322)
T d1vzoa_ 104 LHLILDYINGGELFTHLSQ 122 (322)
T ss_dssp EEEEECCCCSCBHHHHHHH
T ss_pred eeeeeecccccHHHHHHHh
Confidence 9999999999999999853
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=9e-13 Score=127.19 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=70.6
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------Cc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------DF 504 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------~~ 504 (524)
+.|+..+.||+|+||+||+|.. .+|+.||||++.... ....+.+.+|+.++++++|||||+++++|... ..
T Consensus 17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~ 96 (355)
T d2b1pa1 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD 96 (355)
T ss_dssp TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence 5699999999999999999996 468999999997543 34456789999999999999999999999653 57
Q ss_pred ceEEEcccCCCCHHH
Q 040301 505 KALMWGRLLNISITI 519 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~ 519 (524)
.|+|||||.+|.+..
T Consensus 97 ~~iv~Ey~~~~l~~~ 111 (355)
T d2b1pa1 97 VYLVMELMDANLCQV 111 (355)
T ss_dssp EEEEEECCSEEHHHH
T ss_pred eEEEEeccchHHHHh
Confidence 899999998655443
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1e-12 Score=126.40 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=70.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD------ 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------ 503 (524)
.+.|+..+.||+|+||+||+|.. .+|+.||||++.... ....+.+.+|+++|++++|||||+++++|...+
T Consensus 17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~ 96 (346)
T d1cm8a_ 17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 96 (346)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence 46799999999999999999996 579999999997532 345678899999999999999999999998765
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+|+||||| +++|.+++++
T Consensus 97 ~~~lv~e~~-~~~l~~~~~~ 115 (346)
T d1cm8a_ 97 DFYLVMPFM-GTDLGKLMKH 115 (346)
T ss_dssp CCEEEEECC-SEEHHHHHHH
T ss_pred eEEEEEecc-cccHHHHHHh
Confidence 469999999 5688877653
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.9e-12 Score=107.64 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=71.7
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEcccc-ccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWN-NLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
..+.++.++++++ ..|..+..+++|++|++++| .++.++. ..|.++++|+.|+|++|+|..+.+..|..+
T Consensus 9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~--------~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 79 (156)
T d2ifga3 9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLEL--------RDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79 (156)
T ss_dssp SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECG--------GGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCc--------hhhccccccCcceeeccccCCccccccccc
Confidence 3456888888887 66777888888888888765 4777654 667888888888888888876666666665
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCc
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN 138 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 138 (524)
. +|+.|+|++|+++...+..|..+ .|+.|+|++|.+.
T Consensus 80 ~-~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~ 116 (156)
T d2ifga3 80 P-RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116 (156)
T ss_dssp S-CCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred c-cccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence 5 66666666666653333333332 4555666555553
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4.3e-13 Score=124.45 Aligned_cols=90 Identities=28% Similarity=0.320 Sum_probs=75.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcCC--CCCccceeEEEEcCCc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVC--HRNLIKILSSCSNPDF 504 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~~~~~ 504 (524)
++|++.+.||+|+||.||+|+. .+|+.||||++..... ....++.+|+.++++++ |||||++++++.+++.
T Consensus 4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~ 83 (273)
T d1xwsa_ 4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS 83 (273)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence 4699999999999999999996 5789999999975321 12234678999999986 9999999999999999
Q ss_pred ceEEEcccCC-CCHHHHHHh
Q 040301 505 KALMWGRLLN-ISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~-gsL~~~l~~ 523 (524)
.++||||+.+ +++.+++++
T Consensus 84 ~~lv~e~~~~~~~l~~~~~~ 103 (273)
T d1xwsa_ 84 FVLILERPEPVQDLFDFITE 103 (273)
T ss_dssp EEEEEECCSSEEEHHHHHHH
T ss_pred EEEEEEeccCcchHHHHHhc
Confidence 9999999986 688888753
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.2e-12 Score=126.08 Aligned_cols=92 Identities=17% Similarity=0.264 Sum_probs=77.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----- 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 503 (524)
.++.|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++....
T Consensus 16 ~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~ 95 (348)
T d2gfsa1 16 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 95 (348)
T ss_dssp EETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTC
T ss_pred CCCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccC
Confidence 356799999999999999999996 578999999997543 345567899999999999999999999997543
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++|+||+.+|+|.++++.
T Consensus 96 ~~~~i~~~~~gg~L~~~~~~ 115 (348)
T d2gfsa1 96 NDVYLVTHLMGADLNNIVKC 115 (348)
T ss_dssp CCCEEEEECCSEEHHHHHTT
T ss_pred ceEEEEEeecCCchhhhccc
Confidence 34677788899999999853
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.1e-12 Score=124.11 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=72.9
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc----c
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF----K 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~----~ 505 (524)
.+..|+..+.||+|+||+||+|+. .+|+.||||+++... ....+++.+|+++|+.++||||+++++++..... .
T Consensus 6 i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~ 85 (345)
T d1pmea_ 6 VGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD 85 (345)
T ss_dssp CCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred cCCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccce
Confidence 345699999999999999999996 579999999997543 4456789999999999999999999999976532 3
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++++||+.+|+|.++++.
T Consensus 86 ~~l~~~~~~g~L~~~l~~ 103 (345)
T d1pmea_ 86 VYLVTHLMGADLYKLLKT 103 (345)
T ss_dssp EEEEEECCCEEHHHHHHH
T ss_pred EEEEEeecCCchhhhhhc
Confidence 455566779999999863
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.1e-11 Score=102.31 Aligned_cols=104 Identities=22% Similarity=0.141 Sum_probs=50.7
Q ss_pred CeEecccCcccccCCccccCCCCCCEEEccCC-cccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCC
Q 040301 152 RGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGN-KLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSS 230 (524)
Q Consensus 152 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 230 (524)
+.++.+++.+. ..|..+..+++|++|++.+| .++...+..|.++++|+.|++++|+++...+.+|..+++|+.|+|++
T Consensus 11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 34444444444 33444444455555555433 24444444455555555555555555544445555555555555555
Q ss_pred CcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 231 NSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 231 n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++....+..+. ..+|+.|+|++|.+
T Consensus 90 N~l~~l~~~~~~-~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 90 NALESLSWKTVQ-GLSLQELVLSGNPL 115 (156)
T ss_dssp SCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred CCCcccChhhhc-cccccccccCCCcc
Confidence 555532223332 22455555555554
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.3e-12 Score=121.32 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=71.2
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------- 502 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------- 502 (524)
.++|+..+.||+|+||+||+|+. .+|+.||||++.... ....+++.+|+.+|++++||||+++++++...
T Consensus 9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~ 88 (318)
T d3blha1 9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 88 (318)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence 57899999999999999999996 578999999985432 23356788999999999999999999998663
Q ss_pred -CcceEEEcccCCCCHHHH
Q 040301 503 -DFKALMWGRLLNISITII 520 (524)
Q Consensus 503 -~~~~lv~e~~~~gsL~~~ 520 (524)
...|+|||||+++.+..+
T Consensus 89 ~~~~~iv~e~~~~~~~~~~ 107 (318)
T d3blha1 89 KGSIYLVFDFCEHDLAGLL 107 (318)
T ss_dssp --CEEEEEECCCEEHHHHH
T ss_pred CceEEEEEeccCCCccchh
Confidence 457999999998766543
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.6e-12 Score=123.59 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=65.9
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------CcceE
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------DFKAL 507 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------~~~~l 507 (524)
+|+..++||+|+||+||+|+. .+|+.||||++..... ...+|+++|++++|||||+++++|... .++++
T Consensus 21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l 96 (350)
T d1q5ka_ 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL 96 (350)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence 588888999999999999997 5789999999975432 234799999999999999999998543 34789
Q ss_pred EEcccCCCCHH
Q 040301 508 MWGRLLNISIT 518 (524)
Q Consensus 508 v~e~~~~gsL~ 518 (524)
|||||++|.+.
T Consensus 97 v~Ey~~~~~~~ 107 (350)
T d1q5ka_ 97 VLDYVPETVYR 107 (350)
T ss_dssp EEECCSEEHHH
T ss_pred EEeccCCccHH
Confidence 99999876433
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=9.7e-12 Score=117.29 Aligned_cols=90 Identities=24% Similarity=0.350 Sum_probs=69.0
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CC-CCEEEEEEeeccc--hHHHHHHHHHHHHHhcC---CCCCccceeEEEEc--
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SD-WTNVAIKIFNLQL--ERAFRSFDSECEVLRNV---CHRNLIKILSSCSN-- 501 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~-~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~~-- 501 (524)
.+.++|+..+.||+|+||+||+|+. .+ ++.||||+++... ......+.+|+.+++.+ +|||||+++++|..
T Consensus 4 ~~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~ 83 (305)
T d1blxa_ 4 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 83 (305)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CCcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccc
Confidence 3457899999999999999999996 34 5679999996533 22233466777776654 89999999999864
Q ss_pred ---CCcceEEEcccCCCCHHHH
Q 040301 502 ---PDFKALMWGRLLNISITII 520 (524)
Q Consensus 502 ---~~~~~lv~e~~~~gsL~~~ 520 (524)
....+++||||++|++...
T Consensus 84 ~~~~~~~~~~~e~~~~~~~~~~ 105 (305)
T d1blxa_ 84 TDRETKLTLVFEHVDQDLTTYL 105 (305)
T ss_dssp CSSEEEEEEEEECCSCBHHHHH
T ss_pred cccCceEEEEEEeccCCchhhh
Confidence 3468999999998776544
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.12 E-value=3.3e-11 Score=112.66 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=74.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC-CCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH-RNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H-~niv~l~~~~~~~~~~~lv~e~ 511 (524)
+.|++.+.||+|+||+||+|+. .+++.||||.++... ....+.+|++.++.++| +|++.+++++..+...++||||
T Consensus 5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~ 82 (293)
T d1csna_ 5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL 82 (293)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEe
Confidence 5789999999999999999996 468899999986543 22346788899999865 8999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+ +|+|.+++++
T Consensus 83 ~-~~~l~~~~~~ 93 (293)
T d1csna_ 83 L-GPSLEDLLDL 93 (293)
T ss_dssp C-CCBHHHHHHH
T ss_pred c-CCCHHHHHHh
Confidence 9 6899998864
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=2.3e-10 Score=107.32 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=68.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccce-eEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI-LSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l-~~~~~~~~~~~lv~e~ 511 (524)
+.|+..+.||+|+||.||+|+. .+++.||||.+.... ..+++.+|+++++.++|+|+|.. .++..+++..++||||
T Consensus 7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~ 84 (299)
T d1ckia_ 7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL 84 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCT--TSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhc--cCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence 4699999999999999999996 568899999986543 22457889999999987765554 5555777889999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+. |++.+.++
T Consensus 85 ~~-~~l~~~~~ 94 (299)
T d1ckia_ 85 LG-PSLEDLFN 94 (299)
T ss_dssp CC-CBHHHHHH
T ss_pred cC-Cchhhhhh
Confidence 95 57776654
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.46 E-value=9.3e-08 Score=82.57 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=59.6
Q ss_pred cccCcccCCCCceEEEEEeCCCCEEEEEEeeccc------------------hHHHHHHHHHHHHHhcCCCCCccceeEE
Q 040301 437 NECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL------------------ERAFRSFDSECEVLRNVCHRNLIKILSS 498 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~------------------~~~~~~~~~Ei~~l~~l~H~niv~l~~~ 498 (524)
...+.||+|+||.||+|...+|+.||||.++... ........+|...+.++.|++++..+++
T Consensus 3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~ 82 (191)
T d1zara2 3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW 82 (191)
T ss_dssp EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence 4567899999999999998889999999875321 0112345678899999999999988765
Q ss_pred EEcCCcceEEEcccCCCCHH
Q 040301 499 CSNPDFKALMWGRLLNISIT 518 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~ 518 (524)
. ..++||||++++.+.
T Consensus 83 ~----~~~lvme~~~~~~~~ 98 (191)
T d1zara2 83 E----GNAVLMELIDAKELY 98 (191)
T ss_dssp E----TTEEEEECCCCEEGG
T ss_pred c----CCEEEEEeecccccc
Confidence 3 247999999986543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=5.7e-09 Score=87.72 Aligned_cols=83 Identities=25% Similarity=0.203 Sum_probs=43.8
Q ss_pred ccCCCCCCeEEcccCcCcccC--CccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCc-------
Q 040301 121 IGNLRGLTLLSLFNNDLNGTI--SPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPP------- 191 (524)
Q Consensus 121 ~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------- 191 (524)
+.++++|+.|+|++|+++... +..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|.+......
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~ 140 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence 344566666666666665432 22344556666666666666533222233344566666666666533221
Q ss_pred cccCCCCCCEEE
Q 040301 192 CLASLTSLRELH 203 (524)
Q Consensus 192 ~~~~l~~L~~L~ 203 (524)
.+..+|+|+.||
T Consensus 141 i~~~~P~L~~LD 152 (162)
T d1koha1 141 IRERFPKLLRLD 152 (162)
T ss_dssp HHTTSTTCCEET
T ss_pred HHHHCCCCCEEC
Confidence 244567777664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.6e-08 Score=84.92 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=31.8
Q ss_pred cccCCCCCCEEEccCCcccccC--CccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCc
Q 040301 168 DLCHLKLMYGIRLTGNKLSGHI--PPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234 (524)
Q Consensus 168 ~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 234 (524)
.+..+++|+.|++++|+++... +..+..+++|+.|++++|.++...+-.+....+|+.|++++|.+.
T Consensus 60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 3344555555555555554321 223444555555555555555322212223334555555555554
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=1.1e-07 Score=90.99 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=62.7
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-----------CCCccceeEEEEcC
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-----------HRNLIKILSSCSNP 502 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-----------H~niv~l~~~~~~~ 502 (524)
.|+..+.||+|+||+||+|+. .+|+.||||+++.... ..+.+.+|+.++++++ |+|||++++++...
T Consensus 14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~-~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~ 92 (362)
T d1q8ya_ 14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV-YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK 92 (362)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH-HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc-chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence 499999999999999999996 5789999999976432 3456778998887765 57899999988653
Q ss_pred --CcceEEEcccCCCC
Q 040301 503 --DFKALMWGRLLNIS 516 (524)
Q Consensus 503 --~~~~lv~e~~~~gs 516 (524)
...+++++++..+.
T Consensus 93 ~~~~~~~~~~~~~~~~ 108 (362)
T d1q8ya_ 93 GPNGVHVVMVFEVLGE 108 (362)
T ss_dssp ETTEEEEEEEECCCCE
T ss_pred cccceeeeeeeccccc
Confidence 45666666665543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.83 E-value=2.2e-06 Score=71.83 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=9.0
Q ss_pred CCCCCCCCEEEccCCCCC
Q 040301 72 LTNCRHLKALSLGSNPLG 89 (524)
Q Consensus 72 ~~~l~~L~~L~l~~n~l~ 89 (524)
+...++|++|+|++|.+.
T Consensus 40 L~~n~~L~~L~Ls~n~l~ 57 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAIS 57 (167)
T ss_dssp HTTCSCCCEEECTTSCCB
T ss_pred HhhCCccceeeccccccc
Confidence 344445555555555544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.76 E-value=8.5e-06 Score=68.05 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=27.6
Q ss_pred cCCCCEEEccCCcccCC----CcccccCCCCCCEEeCCCCcCCCC-------CcccccCCCCCCeEEccCC
Q 040301 267 LVDLETLSLASNQFQGP----IPESVGSLISLESLDLSGNNLSGK-------IPKSLETLSHLKQFNASHN 326 (524)
Q Consensus 267 l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~-------~~~~~~~l~~L~~l~l~~n 326 (524)
.+.|+.|+|++|.+... +...+...++|+.|++++|.+... +...+...++|+.++++.+
T Consensus 71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 34455555555544431 112234445556666655544321 1223334455666655544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.39 E-value=1.3e-05 Score=66.81 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=23.6
Q ss_pred cccCCCEEEccc-cccCCCCCCccccCccccCCCCCCCCEEEccCCCCCC
Q 040301 42 NLRHLSSLLLTW-NNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGG 90 (524)
Q Consensus 42 ~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 90 (524)
+.++|++|+|++ +.++.. +..++...+...++|++|+|++|.++.
T Consensus 15 ~~~~L~~L~L~~~~~i~~~----~~~~l~~al~~n~~L~~L~Ls~n~l~~ 60 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVP----TLKACAEALKTNTYVKKFSIVGTRSND 60 (166)
T ss_dssp TCTTCCEEECTTCTTCCHH----HHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred cCCCCcEEEcCCCCCCCHH----HHHHHHHHHhcCCccCeeeccCCcccH
Confidence 445666666665 334332 111222444556666667776666653
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.10 E-value=9.2e-05 Score=61.42 Aligned_cols=10 Identities=10% Similarity=0.102 Sum_probs=4.2
Q ss_pred CCCCEEEccC
Q 040301 173 KLMYGIRLTG 182 (524)
Q Consensus 173 ~~L~~L~l~~ 182 (524)
+.|++|++++
T Consensus 17 ~~L~~L~L~~ 26 (166)
T d1io0a_ 17 PDLEEVNLNN 26 (166)
T ss_dssp TTCCEEECTT
T ss_pred CCCcEEEcCC
Confidence 4444444443
|
| >d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Type IIIa 3',5"-aminoglycoside phosphotransferase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.82 E-value=0.056 Score=47.29 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=59.5
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv 508 (524)
..--+.|+..+..+-++-+.||+... +++.+.+|+...........+.+|...+..+. +--+.+++++...++..++|
T Consensus 10 ~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv 88 (263)
T d1j7la_ 10 KKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL 88 (263)
T ss_dssp HHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred HHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEE
Confidence 33334555444433333467998875 55667888886544333345667888877653 44467888888888889999
Q ss_pred EcccCCCCHHHH
Q 040301 509 WGRLLNISITII 520 (524)
Q Consensus 509 ~e~~~~gsL~~~ 520 (524)
||+++|.++.+.
T Consensus 89 ~~~l~G~~~~~~ 100 (263)
T d1j7la_ 89 MSEADGVLCSEE 100 (263)
T ss_dssp EECCSSEEHHHH
T ss_pred EEeccccccccc
Confidence 999999877543
|
| >d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]
Probab=90.75 E-value=0.25 Score=42.59 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=51.8
Q ss_pred cccCCCC-ceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC--CCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 441 LLGTGSF-GSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC--HRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 441 ~ig~g~~-g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
.+..|.. +.||+....++..+.+|....... ..+.+|...++.+. +--+.+++++..+++..++||||++|-++
T Consensus 17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~---~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~ 93 (255)
T d1nd4a_ 17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL---NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL 93 (255)
T ss_dssp ECSCTTSSCEEEEEECTTSCCEEEEEECSCTT---SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred EcCCcccCCeEEEEEeCCCCEEEEEeCCccCH---hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence 3344443 578999887777788887654432 33556777776553 33467788888888889999999998654
|