Citrus Sinensis ID: 040316

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------
MAGTSIMETLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKENISSVNTDNLASEVPESVFARMSCENSDLATSEAPASSEQHDSFNPRNINQSFGDLSIENGGDATVSNSQASTSASLGRNSFTHESIVNLFNIVELALGPLSRSHDVEIQERARNVLGFTDLIEQEILNPVVQGEENLARAETEASRVVKLMCDAFSEELGPVSTSAQDRVPVPDGLLLKENLADLETICGDIQLPLSSSFSLSSTPLGEAVDISRTNLQSKDETEPSHESTSLLAEHRKRHGLYYLASEKSEGASNDYPPANDPMSQDKLNDDAEDLLKLTEQSLAPKKKPNQAKPRPVVLKLDGDEISVAAKKPELKDDLLSGVVQDVLLGNDGVPSSSRSNRSENLSGKSKGKEKLSTDLSLETKENVPGEKMPDHVNTSSRRSKHRSHGKERRQKGQGKDGEEKEDNGQKEKRKSNHHRGKHKAHQRADEPLNVVAQTPVIPDFLL
ccccHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHEEEEcccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccc
cccHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHcccccccccHHHHccccHcccHHHHHcccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccEEEEcccccccccccEEHccHHHHHHHHccccccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHcccEEcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccEEEEEcccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcc
MAGTSIMETLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIkstdlptksAALRKLSYLSslhgadmsFAAFHAVEvmsspqffykkIGYHavtqsfnddtPVILLITNQLRkdlnssnqFEVSLALECLSRignvdlardlTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELclkdprsylplapEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFlvdddpnlkylglqaLSIIAPKHLWAVLENKDFVIKslsdgdyniKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMvriphcqkgeeIEHQIIDIAMRVKDVRPALVHVCRNLlidpallgnpfLHRILSAAAWvsgeyvefsrnPFELMEALLQprtnlllpsIRAVYVQSVFKVLIFCAHSYllhkenissvntdnlasevpeSVFArmscensdlatseapasseqhdsfnprninqsfgdlsienggdatvsnsqastsaslgrnsfthESIVNLFNIVElalgplsrshdvEIQERARNVLGFTDLIEQEILNPVVQGEENLARAETEASRVVKLMCDAFseelgpvstsaqdrvpvpdglllKENLADLETIcgdiqlplsssfslsstplgeavdisrtnlqskdetepshestSLLAEHRKRHGLYYlaseksegasndyppandpmsqdklnDDAEDLLKLTEqslapkkkpnqakprpvvlkldgdeisvaakkpelkddllsGVVQdvllgndgvpsssrsnrsenlsgkskgkeklstdlsletkenvpgekmpdhvntssrrskhrshgkerrqkgqgkdgeekedngqkekrksnhhrgkhkahqradeplnvvaqtpvipdfll
magtsimeTLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRReikstdlptksaALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKlatleprlakrvvepICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKenissvntdnlASEVPESVFARMSCENSDLATSEAPASSEQHDSFNPRNINQSFGDLSIENGGDATVSNSQASTSASLGRNSFTHESIVNLFNIVELALGPLSRSHDVEIQERARNVLGFTDLIEQEILNPVVQGEENLARAETEASRVVKLMCDAFSEelgpvstsaqdrvPVPDGLLLKENLADLETICGDIQLPLSSSFSLSSTPLGEAVDISRtnlqskdetepshestsllaeHRKRHGLYYLASEKSEGASNDYPPANDPMSQDKLNDDAEDLLKLTeqslapkkkpnqakprpvvlkLDGDEISVAakkpelkddllSGVVQDVLlgndgvpsssrsnrsenlsgkskgkeklstdlsletkenvpgekmpdhvntssrrskhrshgkerrqkgqgkdgeekedngqkekrksnhhrgkhkahqradeplnvvaqtpvipdfll
MAGTSIMETLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKENISSVNTDNLASEVPESVFARMSCENSDLATSEAPASSEQHDSFNPRNINQSFGDLSIENGGDATVSNSQASTSASLGRNSFTHESIVNLFNIVELALGPLSRSHDVEIQERARNVLGFTDLIEQEILNPVVQGEENLARAETEASRVVKLMCDAFSEELGPVSTSAQDRVPVPDGLLLKENLADLETICGDIQlplsssfslsstplGEAVDISRTNLQSKDETEPSHESTSLLAEHRKRHGLYYLASEKSEGASNDYPPANDPMSQDKLNDDAEDLLKLTEQSLAPKKKPNQAKPRPVVLKLDGDEISVAAKKPELKDDLLSGVVQDVLLGNDGVPsssrsnrsenlsgkskgkeklsTDLSLETKENVPGEKMPDHVNTssrrskhrshgkerrQKGQGKDGEEKEDNGQKEKRKSNHHRGKHKAHQRADEPLNVVAQTPVIPDFLL
********TLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIK********AALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKENISSV****************************************************************************FTHESIVNLFNIVELALGPLSRSHDVEIQERARNVLGFTDLIEQEILNPVVQGEENLARA*TEASRVVKLMCDAFSE************VPVPDGLLLKENLADLETICGDIQLPL***********************************************YY***************************************************************************LLSGVVQDVLL**********************************************************************************************************************
**************LDDLIKGIRQQQIKESLFISKAIEEIRR********TKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKENISSVNTDNLASEVPESVFARMSCEN********************************************************************************************************************************AFSEE******************************************************************************************************************************************************************************************************************************************************************************************TPVIPDFLL
MAGTSIMETLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKENISSVNTDNLASEVPESVFARMS*******************SFNPRNINQSFGDLSIENGGD***************RNSFTHESIVNLFNIVELALGPLSRSHDVEIQERARNVLGFTDLIEQEILNPVVQGEENLARAETEASRVVKLMCDAFSEELGPVSTSAQDRVPVPDGLLLKENLADLETICGDIQLPLSSSFSLSSTPLGEAVDISRT******************AEHRKRHGLYYLASEKSEGASNDYPPANDPMSQDKLNDDAEDLLKLTEQSLAPKKKPNQAKPRPVVLKLDGDEISVAAKKPELKDDLLSGVVQDVLLGNDG***************************SLETKENVPG**********************************************************ADEPLNVVAQTPVIPDFLL
*****IMETLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKENISSVNTDNLASEVPESVFARMSCENSDLATSEAPASSEQ*D**N***************************************ESIVNLFNIVELALGPLSRSHDVEIQERARNVLGFTDLIEQEILNPVVQGEENLARAETEASRVVKLMCDAFSEELGPVSTSAQDRVPVPDGLLLKENLADLETICGDIQLPLSSSFSLSSTPLGEAVDI*******************LLAEHRKRHGLYYLASEKSEGASNDYPPANDPMSQ*KLNDDAEDLLKLTEQSLAPKK***QAKPRPVVLKLDGDEISVAAKK****DDLLSGVVQDVLLGN*****************************************************************************************************LNVVAQTPVIPDFLL
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MAGTSIMETLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKENISSVNTDNLASEVPESVFARMSCENSDLATSEAPASSEQHDSFNPRNINQSFGDLSIENGGDATVSNSQASTSASLGRNSFTHESIVNLFNIVELALGPLSRSHDVEIQERARNVLGFTDLIEQEILNPVVQGEENLARAETEASRVVKLMCDAFSEELGPVSTSAQDRVPVPDGLLLKENLADLETICGDIQLPLSSSFSLSSTPLGEAVDISRTNLQSKDETEPSHESTSLLAEHRKRHGLYYLASEKSEGASNDYPPANDPMSQDKLNDDAEDLLKLTEQSLAPKKKPNQAKPRPVVLKLDGDEISVAAKKPELKDDLLSGVVQDVLLGNDGVPSSSRSNRSENLSGKSKGKEKLSTDLSLETKENVPGEKMPDHVNTSSRRSKHRSHGKERRQKGQGKDGEEKEDNGQKEKRKSNHHRGKHKAHQRADEPLNVVAQTPVIPDFLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query957 2.2.26 [Sep-21-2011]
Q9C744869 AP-3 complex subunit delt yes no 0.528 0.582 0.717 0.0
O14617 1153 AP-3 complex subunit delt yes no 0.508 0.422 0.389 1e-103
O54774 1199 AP-3 complex subunit delt yes no 0.549 0.438 0.369 1e-102
Q54WN0 1143 AP-3 complex subunit delt yes no 0.505 0.423 0.393 1e-101
Q865S1 1207 AP-3 complex subunit delt yes no 0.508 0.403 0.385 1e-101
P543621034 AP-3 complex subunit delt yes no 0.517 0.478 0.372 1e-96
Q9UTL8825 AP-3 complex subunit delt yes no 0.500 0.580 0.346 4e-77
Q755A1899 AP-3 complex subunit delt yes no 0.497 0.529 0.296 1e-59
Q08951932 AP-3 complex subunit delt yes no 0.501 0.515 0.283 7e-55
Q8I8U2895 AP-1 complex subunit gamm no no 0.366 0.392 0.258 3e-28
>sp|Q9C744|AP3D_ARATH AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR PE=1 SV=1 Back     alignment and function desciption
 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/527 (71%), Positives = 444/527 (84%), Gaps = 21/527 (3%)

Query: 2   AGTSIMETLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSY 61
           + TSIM+ LFQR L+DLIKG R Q + ES FIS+A+EEIRREIK+TDL TKS AL KLSY
Sbjct: 4   SSTSIMDNLFQRSLEDLIKGFRLQLLGESNFISRAVEEIRREIKATDLSTKSTALHKLSY 63

Query: 62  LSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSS 121
           L++LHG DMS+AAFHAVEV+SS +F +K+IGY A+TQSFND T V+LLITNQ+RKDLNS+
Sbjct: 64  LAALHGVDMSWAAFHAVEVVSSSRFQHKRIGYQAITQSFNDQTSVMLLITNQVRKDLNSA 123

Query: 122 NQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS---------------------NAVRV 160
           N++EVSLALECLSRIG  DLARDLTPEVFTLL S                     +AV+V
Sbjct: 124 NEYEVSLALECLSRIGTHDLARDLTPEVFTLLGSSKSFVKKKAIGVVLRVFEKYHDAVKV 183

Query: 161 CFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLK 220
           CFKRLVENLE+S+P ILSAVVGVFCEL  KDP+S LPLAPEFYK+LVDS+NNW+LIKVLK
Sbjct: 184 CFKRLVENLETSDPQILSAVVGVFCELATKDPQSCLPLAPEFYKVLVDSRNNWVLIKVLK 243

Query: 221 IFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVRE 280
           IFAKLA +EPRL K+V EPICE MRRT AKSL+FEC+RTV+SSLS+ E+AVKLAV K+RE
Sbjct: 244 IFAKLALIEPRLGKKVAEPICEHMRRTVAKSLVFECVRTVVSSLSDNEAAVKLAVAKIRE 303

Query: 281 FLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE 340
           FLV+DDPNLKYLGL ALSI+APKHLWAVLENK+ V+K++SD D N+KLE+L LLM+MV+E
Sbjct: 304 FLVEDDPNLKYLGLNALSIVAPKHLWAVLENKEVVVKAMSDEDPNVKLEALHLLMAMVNE 363

Query: 341 SNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHC 400
            NV+EISR+L+NYALKSDP FCN+I+ S+LS C RN YE+IVDFDWY SLLGEM RIPHC
Sbjct: 364 DNVSEISRILMNYALKSDPLFCNEIIFSVLSACSRNAYEIIVDFDWYLSLLGEMARIPHC 423

Query: 401 QKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEF 460
           Q+GE+IEHQ+IDI MRV+D RP LV V   LLIDPALLGN FLH ILSAAAWVSGEYVEF
Sbjct: 424 QRGEDIEHQLIDIGMRVRDARPQLVRVSWALLIDPALLGNLFLHPILSAAAWVSGEYVEF 483

Query: 461 SRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKE 507
           S+NP+E +EALLQPRT+LL PSI+A+Y+ S FKVL+FC  SY   +E
Sbjct: 484 SKNPYETVEALLQPRTDLLPPSIKAIYIHSAFKVLVFCLGSYFSSQE 530
Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.
Arabidopsis thaliana (taxid: 3702)
>sp|O14617|AP3D1_HUMAN AP-3 complex subunit delta-1 OS=Homo sapiens GN=AP3D1 PE=1 SV=1 Back     alignment and function description
>sp|O54774|AP3D1_MOUSE AP-3 complex subunit delta-1 OS=Mus musculus GN=Ap3d1 PE=1 SV=1 Back     alignment and function description
>sp|Q54WN0|AP3D_DICDI AP-3 complex subunit delta OS=Dictyostelium discoideum GN=ap3d1 PE=3 SV=1 Back     alignment and function description
>sp|Q865S1|AP3D1_BOVIN AP-3 complex subunit delta-1 OS=Bos taurus GN=AP3D1 PE=1 SV=2 Back     alignment and function description
>sp|P54362|AP3D_DROME AP-3 complex subunit delta OS=Drosophila melanogaster GN=g PE=1 SV=4 Back     alignment and function description
>sp|Q9UTL8|AP3D_SCHPO AP-3 complex subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl5 PE=3 SV=2 Back     alignment and function description
>sp|Q755A1|AP3D_ASHGO AP-3 complex subunit delta OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL5 PE=3 SV=1 Back     alignment and function description
>sp|Q08951|AP3D_YEAST AP-3 complex subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APL5 PE=1 SV=1 Back     alignment and function description
>sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query957
224121278968 predicted protein [Populus trichocarpa] 0.984 0.973 0.668 0.0
225455986914 PREDICTED: AP-3 complex subunit delta-li 0.929 0.973 0.637 0.0
449439415977 PREDICTED: AP-3 complex subunit delta-li 0.995 0.975 0.612 0.0
357521163968 AP-3 complex subunit delta-1 [Medicago t 0.981 0.970 0.611 0.0
297734231868 unnamed protein product [Vitis vinifera] 0.880 0.971 0.611 0.0
224133098799 predicted protein [Populus trichocarpa] 0.808 0.968 0.650 0.0
356527843862 PREDICTED: AP-3 complex subunit delta-li 0.805 0.894 0.578 0.0
255567864848 conserved hypothetical protein [Ricinus 0.755 0.852 0.659 0.0
15221961869 AP-3 complex subunit delta [Arabidopsis 0.528 0.582 0.717 0.0
297852502863 delta-adaptin [Arabidopsis lyrata subsp. 0.528 0.586 0.719 0.0
>gi|224121278|ref|XP_002318543.1| predicted protein [Populus trichocarpa] gi|222859216|gb|EEE96763.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1285 bits (3325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/983 (66%), Positives = 783/983 (79%), Gaps = 41/983 (4%)

Query: 1   MAGTSIMETLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLS 60
           MA  S+M+TLFQR LDD+IKG+R QQ  ES FISK IEEIRREIK+TDL TKS AL+KL+
Sbjct: 1   MASPSLMDTLFQRSLDDIIKGLRHQQSTESTFISKVIEEIRREIKTTDLQTKSTALQKLT 60

Query: 61  YLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNS 120
           YL+S+H  DMS+A+FHA+E +SSP F +KKIGY A++QSFN+ TPVILLITNQLRKDLNS
Sbjct: 61  YLNSIHSIDMSWASFHAIECISSPTFAHKKIGYLAISQSFNESTPVILLITNQLRKDLNS 120

Query: 121 SNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS---------------------NAVR 159
            N+FEVSLAL+CLSRIG VDL RDLT EVFTL+S+                     +AVR
Sbjct: 121 GNEFEVSLALDCLSRIGTVDLCRDLTSEVFTLMSTSKVFVRKKAVSVVLRLFEKYPDAVR 180

Query: 160 VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVL 219
           VCFKRLVE+LESS+  I+SAVVGVFCEL  K+PRSYLPLAPEFY+ILVDS+NNW+LIKVL
Sbjct: 181 VCFKRLVESLESSDSQIVSAVVGVFCELASKEPRSYLPLAPEFYRILVDSRNNWVLIKVL 240

Query: 220 KIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVR 279
           KIFA LA LEPRLAKRVVEPIC+ MR+T AKS++FECIRTV++S +EYESAVKLA VK+R
Sbjct: 241 KIFANLAPLEPRLAKRVVEPICDHMRKTGAKSMVFECIRTVVTSFTEYESAVKLAAVKIR 300

Query: 280 EFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVS 339
           EFL++DDPNLKYLGL  LSI+APK+LWAVLENKD VI+SLSD D NIKL+SL L+M+MVS
Sbjct: 301 EFLLEDDPNLKYLGLHVLSIMAPKNLWAVLENKDVVIQSLSDEDPNIKLKSLCLVMAMVS 360

Query: 340 ESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPH 399
           ESNV EI RVL+NYALKSDPEFCN+ILGSILSTCC+N+YE+I+DFDWY SLLGEM RIPH
Sbjct: 361 ESNVVEICRVLVNYALKSDPEFCNEILGSILSTCCQNVYEIIIDFDWYVSLLGEMSRIPH 420

Query: 400 CQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVE 459
           CQKGEEIE+Q+IDI MRVKDVRP LV V R+LLIDPALLGNPFLHRILSAAAWV GEYVE
Sbjct: 421 CQKGEEIENQLIDIGMRVKDVRPELVRVGRHLLIDPALLGNPFLHRILSAAAWVCGEYVE 480

Query: 460 FSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKENISSVNTDNLAS 519
           FSRNP ELMEALLQPRT LL  SIR VY+QS FKVLIFC  SYL+ KE+++S  +D LAS
Sbjct: 481 FSRNPVELMEALLQPRTGLLPSSIRTVYMQSAFKVLIFCVCSYLVQKEDMTSEVSD-LAS 539

Query: 520 EVPESVFARMSCENSDLATSEAPASSEQHDSFNPRNINQSFGDLSIENGGDATVSNSQAS 579
           +       R   E+SDLA+++AP   +Q + FNPRN NQS+ D S+ NGG     + Q S
Sbjct: 540 K-------RECSESSDLASAKAPVERDQDEGFNPRNSNQSYEDPSVVNGG-----HGQLS 587

Query: 580 TSASLGRNSFTHESIVNLFNIVELALGPLSRSHDVEIQERARNVLGFTDLIEQEILNPVV 639
           TSA +   SFTHESI  L N++ELA+ PL  S+DVEI+ERARN LGF +L++++ILNP +
Sbjct: 588 TSALMEEKSFTHESIFKLLNLMELAMCPLLGSYDVEIEERARNALGFIELVKRDILNPSL 647

Query: 640 QGEENLARAETEASRVVKLMCDAFSEELGPVSTSAQDRVPVPDGLLLKENLADLETICGD 699
           + E NL   E  ASR+V+ + DAFSEELGPVS +AQ+RV +PD L+LKENLADLE ICG+
Sbjct: 648 R-EANLETEEVSASRIVEWVHDAFSEELGPVSITAQERVLIPDELVLKENLADLEAICGN 706

Query: 700 IQLPLSSSFSLSSTPLGEAVDISRTNLQSKDETEPSHESTSLLAEHRKRHGLYYLASEKS 759
           ++LP S SFSL S   GE+  IS +NLQ +++ EPS E+TSLL EHRK H LYYL SEK+
Sbjct: 707 VELPSSCSFSLRSPYYGESAGISFSNLQDEEDPEPSTEATSLLTEHRKLHELYYLPSEKN 766

Query: 760 EGAS--NDYPPANDPMSQDKLNDDAEDLLKLTEQSLAPKKKPNQAKPRPVVLKLD-GDEI 816
           E  +  NDYPPAN P S    NDD +DL+ LT QSL  K+KPN AKPRPVV+KLD GD  
Sbjct: 767 ETITIANDYPPANYPSSGINTNDDTQDLVTLTNQSLVSKRKPNHAKPRPVVVKLDEGDAA 826

Query: 817 SVAAKKPELKDDLLSGVVQDV-LLGNDGVPSSSRSNRSENLSGKSKGKEKLSTDLSLETK 875
            V AKKPE+KDDLLSG ++D+ LLGN+  P+SS+SN S+  S K KGKEKL+ DLS ++K
Sbjct: 827 PVTAKKPEVKDDLLSGAIRDILLLGNEAKPASSQSNPSDKSSIKKKGKEKLNVDLS-DSK 885

Query: 876 ENVPGEKMPDHVNTSSRRSKHRSHGKERRQKGQG-KDGEEKEDNGQKEKRKSNHHRGKHK 934
           E++   + P+  N SSRRSKHR HGKE+ +K QG KDG+  ED G+KEK+KS +  GKHK
Sbjct: 886 EDLAVREQPNPENPSSRRSKHRGHGKEKSKKSQGKKDGDGSEDGGEKEKQKSRNRNGKHK 945

Query: 935 AHQRADEPLNVVAQTPVIPDFLL 957
             QRAD PLNVVAQTP IPDFLL
Sbjct: 946 TRQRADAPLNVVAQTPPIPDFLL 968

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455986|ref|XP_002276686.1| PREDICTED: AP-3 complex subunit delta-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439415|ref|XP_004137481.1| PREDICTED: AP-3 complex subunit delta-like [Cucumis sativus] gi|449503121|ref|XP_004161844.1| PREDICTED: AP-3 complex subunit delta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357521163|ref|XP_003630870.1| AP-3 complex subunit delta-1 [Medicago truncatula] gi|355524892|gb|AET05346.1| AP-3 complex subunit delta-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297734231|emb|CBI15478.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133098|ref|XP_002321481.1| predicted protein [Populus trichocarpa] gi|222868477|gb|EEF05608.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527843|ref|XP_003532516.1| PREDICTED: AP-3 complex subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|255567864|ref|XP_002524910.1| conserved hypothetical protein [Ricinus communis] gi|223535873|gb|EEF37534.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|15221961|ref|NP_175308.1| AP-3 complex subunit delta [Arabidopsis thaliana] gi|30694404|ref|NP_849785.1| AP-3 complex subunit delta [Arabidopsis thaliana] gi|79319515|ref|NP_001031156.1| AP-3 complex subunit delta [Arabidopsis thaliana] gi|75169245|sp|Q9C744.1|AP3D_ARATH RecName: Full=AP-3 complex subunit delta; AltName: Full=Adapter-related protein complex 3 subunit delta; AltName: Full=Delta-adaptin; Short=At-d-Ad; Short=At-delta-Ad gi|12597810|gb|AAG60121.1|AC073555_5 delta-adaptin, putative [Arabidopsis thaliana] gi|15810217|gb|AAL07009.1| At1g48760/F11I4_7 [Arabidopsis thaliana] gi|332194224|gb|AEE32345.1| AP-3 complex subunit delta [Arabidopsis thaliana] gi|332194225|gb|AEE32346.1| AP-3 complex subunit delta [Arabidopsis thaliana] gi|332194226|gb|AEE32347.1| AP-3 complex subunit delta [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297852502|ref|XP_002894132.1| delta-adaptin [Arabidopsis lyrata subsp. lyrata] gi|297339974|gb|EFH70391.1| delta-adaptin [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query957
TAIR|locus:2008129869 delta-ADR "AT1G48760" [Arabido 0.391 0.431 0.715 1.9e-263
UNIPROTKB|O14617 1153 AP3D1 "AP-3 complex subunit de 0.361 0.300 0.392 4.2e-101
MGI|MGI:107734 1199 Ap3d1 "adaptor-related protein 0.402 0.321 0.371 7.2e-101
UNIPROTKB|Q865S1 1207 AP3D1 "AP-3 complex subunit de 0.401 0.318 0.375 6.5e-100
DICTYBASE|DDB_G0279537 1143 ap3d1 "delta adaptin" [Dictyos 0.380 0.318 0.360 1.4e-99
UNIPROTKB|E2QXV5 1216 AP3D1 "Uncharacterized protein 0.402 0.316 0.371 2.6e-99
ZFIN|ZDB-GENE-050208-437 1247 ap3d1 "adaptor-related protein 0.361 0.277 0.392 5.2e-99
UNIPROTKB|E1BWK3 1153 AP3D1 "Uncharacterized protein 0.402 0.333 0.361 2e-97
UNIPROTKB|E1C262 1208 AP3D1 "Uncharacterized protein 0.402 0.318 0.361 1.3e-96
FB|FBgn00010871034 g "garnet" [Drosophila melanog 0.357 0.330 0.376 1.5e-95
TAIR|locus:2008129 delta-ADR "AT1G48760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1403 (498.9 bits), Expect = 1.9e-263, Sum P(4) = 1.9e-263
 Identities = 269/376 (71%), Positives = 321/376 (85%)

Query:   156 NAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLL 215
             +AV+VCFKRLVENLE+S+P ILSAVVGVFCEL  KDP+S LPLAPEFYK+LVDS+NNW+L
Sbjct:   179 DAVKVCFKRLVENLETSDPQILSAVVGVFCELATKDPQSCLPLAPEFYKVLVDSRNNWVL 238

Query:   216 IKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAV 275
             IKVLKIFAKLA +EPRL K+V EPICE MRRT AKSL+FEC+RTV+SSLS+ E+AVKLAV
Sbjct:   239 IKVLKIFAKLALIEPRLGKKVAEPICEHMRRTVAKSLVFECVRTVVSSLSDNEAAVKLAV 298

Query:   276 VKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLM 335
              K+REFLV+DDPNLKYLGL ALSI+APKHLWAVLENK+ V+K++SD D N+KLE+L LLM
Sbjct:   299 AKIREFLVEDDPNLKYLGLNALSIVAPKHLWAVLENKEVVVKAMSDEDPNVKLEALHLLM 358

Query:   336 SMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMV 395
             +MV+E NV+EISR+L+NYALKSDP FCN+I+ S+LS C RN YE+IVDFDWY SLLGEM 
Sbjct:   359 AMVNEDNVSEISRILMNYALKSDPLFCNEIIFSVLSACSRNAYEIIVDFDWYLSLLGEMA 418

Query:   396 RIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSG 455
             RIPHCQ+GE+IEHQ+IDI MRV+D RP LV V   LLIDPALLGN FLH ILSAAAWVSG
Sbjct:   419 RIPHCQRGEDIEHQLIDIGMRVRDARPQLVRVSWALLIDPALLGNLFLHPILSAAAWVSG 478

Query:   456 EYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKE-NISSVNT 514
             EYVEFS+NP+E +EALLQPRT+LL PSI+A+Y+ S FKVL+FC  SY   +E   SS+  
Sbjct:   479 EYVEFSKNPYETVEALLQPRTDLLPPSIKAIYIHSAFKVLVFCLGSYFSSQEPTSSSLAQ 538

Query:   515 DNLASEVPESVFARMS 530
             ++ +  +  +VF   S
Sbjct:   539 ESSSGSLLVNVFTHES 554
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;IMP
GO:0008565 "protein transporter activity" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030276 "clathrin binding" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0007032 "endosome organization" evidence=IMP
GO:0080171 "lytic vacuole organization" evidence=IMP
GO:1990019 "protein storage vacuole organization" evidence=IMP
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
UNIPROTKB|O14617 AP3D1 "AP-3 complex subunit delta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107734 Ap3d1 "adaptor-related protein complex 3, delta 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q865S1 AP3D1 "AP-3 complex subunit delta-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279537 ap3d1 "delta adaptin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXV5 AP3D1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-437 ap3d1 "adaptor-related protein complex 3, delta 1 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWK3 AP3D1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C262 AP3D1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0001087 g "garnet" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C744AP3D_ARATHNo assigned EC number0.71720.52870.5822yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query957
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 1e-62
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 2e-04
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  220 bits (564), Expect = 1e-62
 Identities = 131/458 (28%), Positives = 214/458 (46%), Gaps = 48/458 (10%)

Query: 32  FISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKI 91
            I + +  I    +  D   K  A++KL YL  + G D+SF  F  V++++S  F  K++
Sbjct: 3   RIQQELARILNSFRD-DPRKKKEAVKKLIYLI-MLGEDISFLFFEVVKLVASNDFTLKRL 60

Query: 92  GYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFT 151
           GY  +     +   + +L+TN ++KDL S N     LAL  LS I   +LARDL P++  
Sbjct: 61  GYLYLKLLAEESPDLAILVTNSIKKDLQSPNPLIRGLALRTLSCIRVPELARDLAPDIKK 120

Query: 152 LLSS--NAVR----VC----------------FKRLVENLESSEPVILSAVVGVFCELCL 189
           LL      VR    +                    L E L   +P ++SA V +  E+  
Sbjct: 121 LLVDRDPYVRKKAALAILKLYRKDPDLVRDFLVPELKELLSDKDPGVVSAAVALLYEIRK 180

Query: 190 KDPRSYLPLAPEFYKILVD---SKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRR 246
            D      L P   + L +     N WL +K+L++  + A  +PR  K ++E I   + +
Sbjct: 181 NDRLYLNKLLPLLVRRLCNLLTVCNPWLQVKILRLLTRYAPQDPREPKELLEDILNLL-Q 239

Query: 247 TEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW 306
               ++L+E ++T++  L      + LAV  +   L   D NL+Y+ L+ L+ I  KH  
Sbjct: 240 NSNNAVLYEAVKTII-HLDPEPELIVLAVNALGRLLSSPDENLRYVALRNLNKILEKHPP 298

Query: 307 AVLENKDFVIKSL-SDGDYNIKLESLRLLMSMVSESNVAEISRVLINYAL-KSDPEFCNQ 364
           AV  + D +I  L +D D +I+L +L LL  +V ESNV EI + L+ Y    +DPEF  +
Sbjct: 299 AVQ-HLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEFKIK 357

Query: 365 ILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPAL 424
           ++ +I             D +W   +L E++ +      +EI   I DI  +  ++R  +
Sbjct: 358 LVKAI-GRLAEK---FPTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYPELREYI 413

Query: 425 V-HVCRNL--LIDPALLGNPFLHRILSAAAWVSGEYVE 459
           + H+C  L  +  P            +AA W+ GEY E
Sbjct: 414 LEHLCELLEDIESP---------EARAAALWILGEYGE 442

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 957
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 100.0
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 99.96
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 99.95
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.23
PTZ00429746 beta-adaptin; Provisional 98.81
PRK09687280 putative lyase; Provisional 98.44
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.41
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.38
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.33
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.17
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.02
PRK09687280 putative lyase; Provisional 97.96
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.95
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.83
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 97.83
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.82
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.81
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 97.78
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.76
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.7
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 97.66
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 97.6
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 97.56
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.51
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.35
PF05804708 KAP: Kinesin-associated protein (KAP) 97.33
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.24
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.21
KOG18241233 consensus TATA-binding protein-interacting protein 97.14
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.09
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.08
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.81
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.4
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.29
KOG22741005 consensus Predicted importin 9 [Intracellular traf 96.26
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.18
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.08
KOG1242569 consensus Protein containing adaptin N-terminal re 96.02
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 95.83
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 95.8
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 95.75
COG5096757 Vesicle coat complex, various subunits [Intracellu 95.61
KOG18241233 consensus TATA-binding protein-interacting protein 95.47
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.46
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 95.38
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 95.19
PF05804708 KAP: Kinesin-associated protein (KAP) 95.06
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 94.93
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 94.83
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 94.75
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.46
KOG2259823 consensus Uncharacterized conserved protein [Funct 94.28
TIGR02270410 conserved hypothetical protein. Members are found 94.2
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 93.96
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 93.57
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 93.56
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 93.44
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.42
COG1413335 FOG: HEAT repeat [Energy production and conversion 93.28
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 93.18
KOG09151702 consensus Uncharacterized conserved protein [Funct 93.06
KOG1242569 consensus Protein containing adaptin N-terminal re 93.05
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.04
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 92.97
COG1413335 FOG: HEAT repeat [Energy production and conversion 92.91
PF08167165 RIX1: rRNA processing/ribosome biogenesis 92.77
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 92.46
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 92.2
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 91.95
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 91.89
TIGR02270410 conserved hypothetical protein. Members are found 91.82
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 91.74
KOG04141251 consensus Chromosome condensation complex Condensi 91.64
KOG2956516 consensus CLIP-associating protein [General functi 91.48
KOG4224550 consensus Armadillo repeat protein VAC8 required f 91.47
KOG01681051 consensus Putative ubiquitin fusion degradation pr 91.3
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 90.34
KOG2038988 consensus CAATT-binding transcription factor/60S r 90.26
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 89.98
PF1036392 DUF2435: Protein of unknown function (DUF2435) 89.81
KOG12481176 consensus Uncharacterized conserved protein [Funct 89.39
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 89.36
PF06375154 BLVR: Bovine leukaemia virus receptor (BLVR); Inte 89.31
KOG01681051 consensus Putative ubiquitin fusion degradation pr 89.3
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 89.21
KOG4224550 consensus Armadillo repeat protein VAC8 required f 89.09
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 88.6
KOG4199461 consensus Uncharacterized conserved protein [Funct 88.38
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 88.34
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 88.16
PF14500262 MMS19_N: Dos2-interacting transcription regulator 88.04
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 87.67
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 87.57
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 87.44
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 87.18
PF13251182 DUF4042: Domain of unknown function (DUF4042) 86.46
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 85.98
PF05004309 IFRD: Interferon-related developmental regulator ( 85.24
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 84.82
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 84.12
KOG09151702 consensus Uncharacterized conserved protein [Funct 83.99
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 83.01
KOG2025892 consensus Chromosome condensation complex Condensi 82.94
cd03561133 VHS VHS domain family; The VHS domain is present i 82.63
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 82.47
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 82.41
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 81.49
KOG2137700 consensus Protein kinase [Signal transduction mech 81.41
PF1036392 DUF2435: Protein of unknown function (DUF2435) 80.55
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-144  Score=1230.74  Aligned_cols=739  Identities=43%  Similarity=0.635  Sum_probs=648.8

Q ss_pred             hhhhHHhhhhHHHHHHHHhhcChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCC
Q 040316            5 SIMETLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSP   84 (957)
Q Consensus         5 ~~~~~~f~rsL~dfIr~IR~~k~~E~~~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~   84 (957)
                      +.|+++|+|+|.|||||||+|..+|++||.+++.|||+++++.+.+.|.+|++||.|++|+ |+||+|+.||++++|+|+
T Consensus         6 ~~~~~~f~ksl~dlikgir~~~~~e~~fis~~l~e~r~E~k~~d~~~k~~a~~kl~yl~ml-g~d~swa~f~iveVmsss   84 (877)
T KOG1059|consen    6 APIDRFFEKSLKDLIKGIRSHKEDEEKFISQCLEEIRQELKSDDLNVKSNAVLKLTYLEML-GVDMSWAAFHIVEVMSSS   84 (877)
T ss_pred             chHHHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH-cchHHHHhhhhhhhhhhh
Confidence            5899999999999999999999999999999999999999999999999999999999997 999999999999999999


Q ss_pred             CccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhh---------
Q 040316           85 QFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS---------  155 (957)
Q Consensus        85 ~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~---------  155 (957)
                      +|.+||+||+|++|+|+.++|++||+||+++|||+|+|.|..|+||.+||+|.||++|+||+++|+.+|+|         
T Consensus        85 k~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkA  164 (877)
T KOG1059|consen   85 KFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKA  164 (877)
T ss_pred             hhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999         


Q ss_pred             ------------hhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHH
Q 040316          156 ------------NAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFA  223 (957)
Q Consensus       156 ------------~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~  223 (957)
                                  +|+|.|||||++.|+|+||+|++|||+||||++++||++|++|+|.||++|+++.|||+.|||||+|+
T Consensus       165 Il~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~  244 (877)
T KOG1059|consen  165 ILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFA  244 (877)
T ss_pred             HHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHh
Confidence                        47889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhh-----cCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 040316          224 KLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSS-----LSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALS  298 (957)
Q Consensus       224 ~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~-----l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~  298 (957)
                      .++|.||+|++|++++|+++|++|.++|++|||||||+.+     ++++.+.+++|+++|+.|+.++|||+||+||.+|.
T Consensus       245 aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~  324 (877)
T KOG1059|consen  245 ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMS  324 (877)
T ss_pred             hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987     67888999999999999999999999999999999


Q ss_pred             HHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcCh-HHHHHHHHHHHHHHhhhh
Q 040316          299 IIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDP-EFCNQILGSILSTCCRNL  377 (957)
Q Consensus       299 ~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~-~~r~elI~aI~~ic~~~~  377 (957)
                      +|+.+||++|+.|.+.|+.||+|.|.+||.+||+||++||+++|+.+||+.||.|+..+++ .||.+++.+|+.+|++.+
T Consensus       325 KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~sn  404 (877)
T KOG1059|consen  325 KILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSN  404 (877)
T ss_pred             HHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999988 899999999999999999


Q ss_pred             cccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCC----cccCCCchHHHHHHHhhh
Q 040316          378 YEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDP----ALLGNPFLHRILSAAAWV  453 (957)
Q Consensus       378 y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~----~~l~~~~~~~~l~a~aWI  453 (957)
                      |++++||+||+.+|++|.++.|...|..|.+|++|+++|||++|+++|..+..+|.|+    +...|...++++.+||||
T Consensus       405 Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi  484 (877)
T KOG1059|consen  405 YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWI  484 (877)
T ss_pred             hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999876    223344578999999999


Q ss_pred             hccCCCCCCCHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccCCChhhHhhhccccc
Q 040316          454 SGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKENISSVNTDNLASEVPESVFARMSCEN  533 (957)
Q Consensus       454 lGEY~~~i~~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (957)
                      +|||++++.||.++++.|+++++..+|+++|++|+++++|+|..    |+.+.+.+                        
T Consensus       485 ~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~----~~~~~ee~------------------------  536 (877)
T KOG1059|consen  485 LGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCS----WCSQFEET------------------------  536 (877)
T ss_pred             HHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHH----HHhhcCcc------------------------
Confidence            99999999999999999999999999999999999999999988    77754420                        


Q ss_pred             ccccccCCCCCccccCCCCCCCCCcccCCccccCCCCccccccccccccccCCCCCchhHHHHHHHHHHHHhcCCCCCCC
Q 040316          534 SDLATSEAPASSEQHDSFNPRNINQSFGDLSIENGGDATVSNSQASTSASLGRNSFTHESIVNLFNIVELALGPLSRSHD  613 (957)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~s~~  613 (957)
                                                                             .+++.+..|.+.|+.+|++|..|.|
T Consensus       537 -------------------------------------------------------~~~e~~~sL~~~i~~~l~qf~~s~d  561 (877)
T KOG1059|consen  537 -------------------------------------------------------KDFEGIVSLVNLILSFLEQFSGSSD  561 (877)
T ss_pred             -------------------------------------------------------cchhHHHHHHHHHHHHhhcccCccc
Confidence                                                                   1356788889999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHhcCCccccccchhcccchhHHHHHHhHHhhhcccCCCCchhhccCCCCCCccCCccchhh
Q 040316          614 VEIQERARNVLGFTDLIEQEILNPVVQGEENLARAETEASRVVKLMCDAFSEELGPVSTSAQDRVPVPDGLLLKENLADL  693 (957)
Q Consensus       614 ~EVQERA~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~eL~PVa~~aQ~kV~~P~~LdLd~~l~~l  693 (957)
                      +||||||.++++|+++++..+..       .++..+...+  ...+..+|++||||||++||+|||||||||||+||+++
T Consensus       562 ~EvQERA~~~~~li~~i~~~~~~-------~~~~~~m~~~--~~~~~~lf~~EL~PVA~kAQrKV~vpdgLDLd~~i~~~  632 (877)
T KOG1059|consen  562 LEVQERASEVLELIRLIREALAE-------DTDGQPMELS--EVEMSLLFAGELNPVAPKAQRKVPVPDGLDLDEWINEP  632 (877)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhh-------cccchhhhhH--HHHHHHHhccccCccchhhcccCCCCCCcCcccccCCc
Confidence            99999999999999999875553       2334444444  33567789999999999999999999999999999999


Q ss_pred             HhhhcCCCCCCCccc--cCCCCCCCccccccccccCcCCCCCCCccchhhHHHHHhhcCccccccccccC----CcCCCC
Q 040316          694 ETICGDIQLPLSSSF--SLSSTPLGEAVDISRTNLQSKDETEPSHESTSLLAEHRKRHGLYYLASEKSEG----ASNDYP  767 (957)
Q Consensus       694 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~rk~~~~~yl~~~~~~~----~~~~~~  767 (957)
                      |++|.....++.|--  ..++|+-+|+.+.+.-.-++...+....|..+++||||+.||||||++++.+-    ..++||
T Consensus       633 ~~~~~~~~sds~sd~d~~~~s~~~~ee~~~~~k~~~~~~~ske~le~~~~~reqe~~nnPyYlks~~~~~~~~~~~~~~e  712 (877)
T KOG1059|consen  633 EAADKELLSDSESDADEDLMSFIMDEELEGRFKDRDSSYESKEELERRRILREQEQMNNPYYLKSSPEAQTKLLTLSEYE  712 (877)
T ss_pred             ccccchhcccchhhhhhhhcCccchhhccCcccccchhhcChhhHHHHHHHHHHHHhcCCeeecCCccccccCCCccccc
Confidence            999965554443322  33444444555544433222223334556778999999999999999988773    568999


Q ss_pred             CCC-CCCCCCCCCchHHHHHHHhhhhcCCCCCCCCCCCCceEEeec-CCccccccCCc------cccccchhhhhHHhH
Q 040316          768 PAN-DPMSQDKLNDDAEDLLKLTEQSLAPKKKPNQAKPRPVVLKLD-GDEISVAAKKP------ELKDDLLSGVVQDVL  838 (957)
Q Consensus       768 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~  838 (957)
                      -.| +|.-+.++.++.---+-+.++  ...+|+++.|++++|+|+| ++....++++.      .-.++.+..+|.-+.
T Consensus       713 ~~~~~pei~~~ls~~~~n~l~~~~~--~~e~k~~~g~k~~~~~~~~~~~~~kk~~kr~~~~~t~sd~e~~~~~~vn~~~  789 (877)
T KOG1059|consen  713 NVNKIPEIQLPLSDPSFNPLSLSQT--LIERKKKKGKKKKKVQKKDDKKVIKKAPKRKDNFQTPSDEESTPLHKVNLAT  789 (877)
T ss_pred             cccccchhcccccccccccchhhHH--HHHhhhhccCcccceeecccchhhhcccccccccCCCCcccccHHHHHHHhh
Confidence            888 333333322221111111111  2278999999999999999 77766555442      112445666665443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query957
1w63_A618 Ap1 Clathrin Adaptor Core Length = 618 1e-19
2jkr_A623 Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm 1e-19
2vgl_A621 Ap2 Clathrin Adaptor Core Length = 621 1e-19
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618 Back     alignment and structure 
Iteration: 1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 180/393 (45%), Gaps = 49/393 (12%)
Query: 15  LDDLIKGIR--QQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSF 72
           L +LI+ IR  + Q +E   I K    IR   +  D   +   + KL Y+  L G    F
Sbjct: 12  LRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHML-GYPAHF 70
Query: 73  AAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALEC 132
                +++++S +F  K+IGY       ++   V LL+TN ++ DLN S QF   LAL  
Sbjct: 71  GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCT 130
Query: 133 LSRIGNVDLARDLTPEVFTLLSSN-----------AVRVCFKRLVENLESSEPV------ 175
           L  +G+ ++ RDL  EV  LL ++           AV V  +++ E +E   P       
Sbjct: 131 LGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHV-IRKVPELMEMFLPATKNLLN 189
Query: 176 -----ILSAVVGVFCELCLKDP---RSYLPLAPEFYKILVD--------------SKNNW 213
                +L   V +  E+C + P     +  L P+  +IL +                + +
Sbjct: 190 EKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249
Query: 214 LLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTE-----AKSLLFECIRTVLSSLSEYE 268
           L +++L++   L   +   ++ + + + +    TE       ++L+E + T++   SE  
Sbjct: 250 LQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESG 309
Query: 269 SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKL 328
             V LA+  +  FL+++D N++Y+ L +L         AV  ++  ++  L D D +IK 
Sbjct: 310 LRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKR 368
Query: 329 ESLRLLMSMVSESNVAEISRVLINYALKSDPEF 361
            ++ L  ++V+ +N+  + + L+ +    +PEF
Sbjct: 369 RAMELSFALVNGNNIRGMMKELLYFLDSCEPEF 401
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm( Phosphos)qikrllse Length = 623 Back     alignment and structure
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core Length = 621 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query957
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-111
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 6e-99
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 4e-68
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 6e-38
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
 Score =  355 bits (913), Expect = e-111
 Identities = 102/535 (19%), Positives = 210/535 (39%), Gaps = 56/535 (10%)

Query: 7   METLFQRDLDDLIKGIRQQQIK--ESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSS 64
           M       L +LI+ IR  + +  E   I K    IR   +  D   +   + KL Y+  
Sbjct: 4   MSMPAPIRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHM 63

Query: 65  LHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQF 124
           L G    F     +++++S +F  K+IGY       ++   V LL+TN ++ DLN S QF
Sbjct: 64  L-GYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQF 122

Query: 125 EVSLALECLSRIGNVDLARDLTPEVFTLLSS---------------------NAVRVCFK 163
              LAL  L  +G+ ++ RDL  EV  LL +                       + +   
Sbjct: 123 VQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLP 182

Query: 164 RLVENLESSEPVILSAVVGVFCELCLKDP---RSYLPLAPEFYKILVD------------ 208
                L      +L   V +  E+C + P     +  L P+  +IL +            
Sbjct: 183 ATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDV 242

Query: 209 --SKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAK-----SLLFECIRTVL 261
               + +L +++L++   L   +   ++ + + + +    TE       ++L+E + T++
Sbjct: 243 SGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIM 302

Query: 262 SSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSD 321
             +        LA+  +  FL+++D N++Y+ L +L         AV  ++  ++  L D
Sbjct: 303 -DIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKD 361

Query: 322 GDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVI 381
            D +IK  ++ L  ++V+ +N+  + + L+ +    +PEF       I     +      
Sbjct: 362 LDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKY----A 417

Query: 382 VDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNP 441
               W+   +  ++        ++    +I +     ++    V      ++        
Sbjct: 418 PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYS---- 473

Query: 442 FLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLI 496
               ++  AAW  GEY +   +     E  +Q   + +L  + +V + ++   + 
Sbjct: 474 -QQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVT 527
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query957
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.29
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.25
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.22
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.16
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.15
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.11
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.09
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.08
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.07
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.98
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.98
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.93
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.91
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.88
1qgr_A876 Protein (importin beta subunit); transport recepto 98.87
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.85
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.84
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.84
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.83
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.78
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.78
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.75
1qgr_A876 Protein (importin beta subunit); transport recepto 98.74
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.72
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.72
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.71
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.68
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.66
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.64
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.56
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.52
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.51
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.51
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.49
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.44
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.37
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.3
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.27
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.23
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.22
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.18
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.18
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.13
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.03
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.83
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.75
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.64
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.55
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.5
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.34
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.24
3nmz_A458 APC variant protein; protein-protein complex, arma 97.16
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.14
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.11
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.08
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.08
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.06
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.04
2x1g_F971 Cadmus; transport protein, developmental protein, 96.95
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 96.82
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 96.81
2x19_B963 Importin-13; nuclear transport, protein transport; 96.75
2db0_A253 253AA long hypothetical protein; heat repeats, hel 96.75
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.67
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 96.53
3nmz_A458 APC variant protein; protein-protein complex, arma 96.51
2x1g_F971 Cadmus; transport protein, developmental protein, 96.4
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.4
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.32
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 96.1
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.04
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.01
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 95.87
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 95.83
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 94.99
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 94.97
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 94.5
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 94.41
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.47
2x19_B963 Importin-13; nuclear transport, protein transport; 93.34
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 93.17
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 92.31
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 92.16
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 92.13
3grl_A651 General vesicular transport factor P115; vesicle t 92.03
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 91.11
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 88.4
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 88.12
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 88.03
3grl_A651 General vesicular transport factor P115; vesicle t 85.88
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 85.8
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 85.17
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 80.29
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
Probab=100.00  E-value=3.9e-81  Score=749.55  Aligned_cols=476  Identities=24%  Similarity=0.385  Sum_probs=432.0

Q ss_pred             HhhhhHHHHHHHHhhcC--hHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCC
Q 040316           10 LFQRDLDDLIKGIRQQQ--IKESLFISKAIEEIRREIKS---TDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSP   84 (957)
Q Consensus        10 ~f~rsL~dfIr~IR~~k--~~E~~~I~~elaEIR~eL~S---~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~   84 (957)
                      .=+|+|++||++||+|+  .+|+++|++|+++||++|++   .+.+.|+++|+|+||++|+ |||++|+||+|+++|+|+
T Consensus         8 ~~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~-G~d~s~~~~~vvkl~~s~   86 (621)
T 2vgl_A            8 EGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL-GHDIDFGHMEAVNLLSSN   86 (621)
T ss_dssp             -CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHH-SCCCCSCHHHHHHGGGCS
T ss_pred             CCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc-CCCCchhHHHHHHHhcCC
Confidence            34599999999999997  57999999999999999995   3678999999999999886 999999999999999999


Q ss_pred             CccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhh--hh--hhHH-
Q 040316           85 QFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLL--SS--NAVR-  159 (957)
Q Consensus        85 ~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL--~~--~AvR-  159 (957)
                      ++..||+||||++++++.++|+++|+||+|+|||+|+||++||+|||+||+|++|++++++.++|.++|  .|  +.|| 
T Consensus        87 ~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK  166 (621)
T 2vgl_A           87 RYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQ  166 (621)
T ss_dssp             CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999  66  2333 


Q ss_pred             --------------------HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhh-----cC----
Q 040316          160 --------------------VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVD-----SK----  210 (957)
Q Consensus       160 --------------------~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~-----~~----  210 (957)
                                          .+++++.++|.|+|++|+.+|++++++|++.+|+.|.+++|.++++|.+     ..    
T Consensus       167 ~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~  246 (621)
T 2vgl_A          167 SAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQD  246 (621)
T ss_dssp             HHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCST
T ss_pred             HHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccc
Confidence                                1356788899999999999999999999999999999999998887753     12    


Q ss_pred             -------ChHHHHHHHHHHHhhccC-ChHHHhHHHHHHHHHhhc-------------CCcchHHHHHHHHHHhhcCCcHH
Q 040316          211 -------NNWLLIKVLKIFAKLATL-EPRLAKRVVEPICEFMRR-------------TEAKSLLFECIRTVLSSLSEYES  269 (957)
Q Consensus       211 -------npWlqIkILkLL~~l~p~-ep~L~~kLl~~L~~lL~~-------------t~a~SVLyE~I~~Ii~~l~~~~~  269 (957)
                             +||+|+++|++|+.|++. +|+..+.+.+.+..++++             |.++||+|||+++|+... ..++
T Consensus       247 ~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~  325 (621)
T 2vgl_A          247 YTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPN  325 (621)
T ss_dssp             TEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHH
T ss_pred             hhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHH
Confidence                   799999999999999986 588888888888777642             225699999999999864 4578


Q ss_pred             HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh--HHHhhhhHhhccccc-CCCHHHHHHHHHHHhhhcCcccHHHH
Q 040316          270 AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL--WAVLENKDFVIKSLS-DGDYNIKLESLRLLMSMVSESNVAEI  346 (957)
Q Consensus       270 li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p--~~v~~h~~~Il~cL~-D~D~sIR~~ALeLL~~Lvne~Nv~~I  346 (957)
                      +++.|++.|++||.++++|+||+||.+|.+|+..+|  .+|+.|+..|+.||+ |+|++||++||++|+.|+|++|+..|
T Consensus       326 ~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~I  405 (621)
T 2vgl_A          326 LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQI  405 (621)
T ss_dssp             HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHH
Confidence            889999999999999999999999999999999986  799999999999999 99999999999999999999999999


Q ss_pred             HHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHH
Q 040316          347 SRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVH  426 (957)
Q Consensus       347 V~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~  426 (957)
                      ++||++|+...|.+|+.+++.+|+.+|.+  |  +++++||+++|++++...|+++.+++|.++++++.++|+.|.+++.
T Consensus       406 v~eL~~yl~~~d~~~~~~~v~~I~~la~k--~--~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~  481 (621)
T 2vgl_A          406 VAEMLSYLETADYSIREEIVLKVAILAEK--Y--AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAK  481 (621)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHH--H--CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHh--c--CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHH
Confidence            99999999999999999999999988875  3  5789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCC-----HHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316          427 VCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRN-----PFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIF  497 (957)
Q Consensus       427 ~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~-----p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~  497 (957)
                      .+++.+.++.     ....++++++||+||||+.+.+     |.++++.+. ++|..+++.||+++|+|++|+|.+
T Consensus       482 ~l~~~l~~~~-----~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~-~~~~~~~~~v~~~~Lta~~Kl~~~  551 (621)
T 2vgl_A          482 TVFEALQAPA-----CHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLH-SKFHLCSVPTRALLLSTYIKFVNL  551 (621)
T ss_dssp             HHHHHHTSSS-----CCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHH-HHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcc-----chHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHH
Confidence            9999887653     2346789999999999998765     568898765 479999999999999999999877
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 957
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 8e-82
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 1e-69

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query957
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.22
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.11
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.91
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.73
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.68
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.62
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.59
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.57
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.56
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.52
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.47
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.43
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.25
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.22
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.14
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.01
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.01
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 97.97
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.93
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.4
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.38
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.24
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.98
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.52
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 95.67
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 94.91
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 94.75
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 94.52
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 93.05
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 86.47
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure