Citrus Sinensis ID: 040322

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MPFLRDPLWENYYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSFILSALIGKITS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHHcccccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccEEEEccHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEccEEEccHHcEEEEccHHHHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHHccccccccccEEEccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEcccEccHHHHHHHHHHcccccHHHcccccHHHEEccccc
Coil and Loop (DISEMBL)
mpflrdplwenyyafrdtetvfdmipaDMVVNAMIVAMVAHARQSSYVNIYRVgsslrnpvtfmNVLDYsfdyftkkswidntgkpvkVTKVIIFSRMVGFHGYMKIQYllplklsgftcrdynwqntLCCQYFEgmltgrrrktnfvmplveiygphllsnatfddrnTEKLRMATRENMMETDIFSFILSALIGKITS
Flexible Loop (DISEMBL)
MPFLRDPLWENYYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTkkswidntgkpvkVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIygphllsnatfddrNTEKLRMATrenmmetdIFSFILSaligkits
Low Complexity Region (SEG)
MPFLRDPLWENYYAFRDTETVFDMIPadmvvnamivamvahaRQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSFILSALIGKITS
Disordered region (IsUnstruct)
***LRDPLWENYYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDR****L*MATRENMMETDIFSFILSALIGK***
Disordered Region (DISOPRED)
******PLWENYYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATR**MMETDIFSFILSALIGKI**
Disordered Region (DISEMBL)
MPFLRDPLWENYYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSFILSALIGKITS
Disordered Region (DISPRO)
**FLRDPLWENYYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSFILSALIGKI**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPFLRDPLWENYYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSFILSALIGKITS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9XGY7	493	Alcohol-forming fatty acy	N/A	no	0.81	0.328	0.453	1e-34
Q39152	491	Fatty acyl-CoA reductase	yes	no	0.81	0.329	0.426	7e-31
Q93ZB9	493	Fatty acyl-CoA reductase	no	no	0.825	0.334	0.398	3e-28
Q9LXN3	493	Probable fatty acyl-CoA r	no	no	0.78	0.316	0.380	7e-25
Q0WRB0	496	Probable fatty acyl-CoA r	no	no	0.78	0.314	0.404	1e-23
Q9FMQ9	409	Putative fatty acyl-CoA r	no	no	0.79	0.386	0.329	4e-17
Q1PEI6	496	Fatty acyl-CoA reductase	no	no	0.78	0.314	0.374	4e-16
Q08891	616	Fatty acyl-CoA reductase	no	no	0.79	0.256	0.270	2e-10

>sp|Q9XGY7|FAR_SIMCH Alcohol-forming fatty acyl-CoA reductase OS=Simmondsia chinensis PE=1 SV=1

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 106/172 (61%), Gaps = 10/172 (5%)

Query: 20  TVFDMIPADMVVNAMIVAMVAHARQSSYVN--IYRVGSSLRNPVTFMNVLDYSFDYFTKK 77
           T+ D+IPADMVVNA IVAMVAHA Q  YV    Y VGSS  NP+    + + +  YFTK 
Sbjct: 305 TIIDLIPADMVVNATIVAMVAHANQR-YVEPVTYHVGSSAANPMKLSALPEMAHRYFTKN 363

Query: 78  SWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGM 137
            WI+    PV V + ++FS    FH Y+ + +LLPLK+           NT+ CQ+F+G 
Sbjct: 364 PWINPDRNPVHVGRAMVFSSFSTFHLYLTLNFLLPLKVLEIA-------NTIFCQWFKGK 416

Query: 138 LTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
               +RKT  ++ LV+IY P+L     FDD NTEKLR+A +E+++E D+F F
Sbjct: 417 YMDLKRKTRLLLRLVDIYKPYLFFQGIFDDMNTEKLRIAAKESIVEADMFYF 468

NADPH-dependent alcohol-forming fatty acyl-coenzyme A reductase that catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The recombinant enzyme accepts saturated and mono-unsaturated fatty acyl-CoAs of 16 to 22 carbons.
Simmondsia chinensis (taxid: 3999)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 8EC: 4

>sp|Q39152|FACR1_ARATH Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2 SV=1

 Score =  133 bits (335), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 95/169 (56%), Gaps = 7/169 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D+ +VFD+IPADMVVNAM+ A  AH+  +    IY VGSS +NPVTF  + D++  YF K
Sbjct: 299 DSNSVFDLIPADMVVNAMVAAATAHSGDTGIQAIYHVGSSCKNPVTFGQLHDFTARYFAK 358

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
           +  I   G P+ V K  I S M  F  YM ++Y LPL++       Y W +         
Sbjct: 359 RPLIGRNGSPIIVVKGTILSTMAQFSLYMTLRYKLPLQILRLINIVYPWSHG-------D 411

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETD 185
             +   RK    M LVE+Y P+LL    FDD NTE+LRM  +EN+ E D
Sbjct: 412 NYSDLSRKIKLAMRLVELYQPYLLFKGIFDDLNTERLRMKRKENIKELD 460

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q93ZB9|FACR3_ARATH Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 98/173 (56%), Gaps = 8/173 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D + V D++PADMVVN+++V+M A A +   + IY VGSSLRNP+      + ++ YF+ 
Sbjct: 305 DLDAVSDVMPADMVVNSILVSMAAQAGKQEEI-IYHVGSSLRNPMKNSKFPELAYRYFSI 363

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
           K W +  GK VKV  + I S M  FH YM I+YL+ LK            N + C+ FE 
Sbjct: 364 KPWTNKEGKVVKVGAIEILSSMRSFHRYMTIRYLIALK-------GLELVNIILCKLFEK 416

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
                 +K NF+  LV++Y P+L     FDD NTEKLR    +  +E ++F F
Sbjct: 417 EFQYFNKKINFIFRLVDLYQPYLFFYGIFDDSNTEKLRKMVSKTGVENEMFYF 469

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C24:0 and C26:0. May be unable to use saturated and monounsaturated C16 and C18 acyl-CoA as substrates. Involved in cuticular wax formation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q9LXN3|FACR4_ARATH Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana GN=FAR4 PE=2 SV=1

 Score =  113 bits (283), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 86/163 (52%), Gaps = 7/163 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D  +V D+IP DMV NAM+ A   HA +     +Y VGSS +NP+TF  + D +  YFTK
Sbjct: 301 DPNSVLDLIPVDMVANAMVTAAAIHAGKLGSQTVYHVGSSCKNPITFEQIHDLAASYFTK 360

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
              +   G  + V+K  I S M  F  YM ++Y LPL++       Y W N    +  + 
Sbjct: 361 NPLVRRDGSSILVSKGTILSTMAQFSFYMTLRYKLPLQMLRLIYVIYPWWNGNKYKDID- 419

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRE 179
                 RK    M LV++Y P++L    FDD NTEKLR+  +E
Sbjct: 420 ------RKIKLAMRLVDLYRPYVLFKGIFDDTNTEKLRLKRKE 456

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q0WRB0|FACR5_ARATH Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5 PE=2 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 86/163 (52%), Gaps = 7/163 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D  +V DMIP DMV NAMI A   HA  S    +Y VGSS +NPVTF  + + +  YFTK
Sbjct: 302 DVNSVCDMIPVDMVANAMITAAAKHAGGSGVHMVYHVGSSHQNPVTFGEIHEIAVRYFTK 361

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
                  G  + V+KV     M  F  YM ++Y LPL+L       Y W+N    +Y + 
Sbjct: 362 NPLRSRNGSLITVSKVRFIPTMALFSLYMTLRYKLPLQLLKLVDIIYPWRNG--DKYGD- 418

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRE 179
               + RK   VM LVE+Y P++L    FDDRNT+ L    +E
Sbjct: 419 ----KNRKIELVMRLVELYEPYVLFKGIFDDRNTKSLCANQKE 457

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q9FMQ9|FACR7_ARATH Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana GN=FAR7 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 9/167 (5%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D +TV D+IP DMVVNAMI     H   S    +Y VGSS +NPV +  + +    YF K
Sbjct: 228 DQKTVCDIIPVDMVVNAMIAIAADHCHDSGSHTVYHVGSSNQNPVIYKQIYEMMSRYFMK 287

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
              +   G  + V KV   S +  F  Y  ++Y LP+++ G          ++       
Sbjct: 288 SPLVGRNGMLI-VPKVTRISTLARFRVYTNLRYKLPIQILGLL--------SVISLSQRD 338

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMME 183
                 RK    M LV++Y P++L    FDD+N E LR+      ME
Sbjct: 339 KFALHNRKFKMAMRLVKLYKPYVLFKGIFDDKNMETLRIKNEAKDME 385

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q1PEI6|FACR8_ARATH Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana GN=FAR8 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 7/163 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D  +V DMIPADMV NAMI A   HA  S    +Y+VGSS +NP+ +  + +  F YFTK
Sbjct: 302 DVNSVCDMIPADMVANAMIAAAATHAGGSKVHMVYQVGSSHQNPIIYGEIREILFCYFTK 361

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
            S     G  + V+K+ +   +  F  YM I+Y LP++L      D  + +    +Y   
Sbjct: 362 NSLRSRNGSMITVSKMKLIPTLALFSLYMTIRYKLPVQLLKLV--DIIYPSREGDEY--- 416

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRE 179
               + RK + VM LV++Y P++L    FDDRNT+ L    +E
Sbjct: 417 --KNKNRKIDMVMRLVKLYEPYVLFKGIFDDRNTKNLCAKQKE 457

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q08891|FACR2_ARATH Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 23/181 (12%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSS----YVNIYRVGSSLRNPVTFMNVLDYSFD 72
           D + V D++PADMVVNA + A+  H    S     +N+Y++ SS  NP+ F ++ +  ++
Sbjct: 421 DPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEINVYQIASSAINPLVFEDLAELLYN 480

Query: 73  YFTKKSWIDNTGKPVKVTKVIIFSRMVGF--HGYMKIQYLLPLKLSGFTCRDYNWQNTL- 129
           ++     +D+ G P+ V  + +F+ +  F  H +   Q    L +SG +  D      L 
Sbjct: 481 HYKTSPCMDSKGDPIMVRLMKLFNSVDDFSDHLWRDAQERSGL-MSGMSSVDSKMMQKLK 539

Query: 130 -CCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFS 188
             C          ++       L  IY P+      FD+ NT++L     ENM E +   
Sbjct: 540 FIC----------KKSVEQAKHLATIYEPYTFYGGRFDNSNTQRL----MENMSEDEKRE 585

Query: 189 F 189
           F
Sbjct: 586 F 586

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. Involved in the synthesis of the lipid component in sporopollenin.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
224078578	378	predicted protein [Populus trichocarpa]	0.855	0.452	0.539	7e-42
356543580	490	PREDICTED: fatty acyl-CoA reductase 3-li	0.805	0.328	0.514	4e-41
356550111	490	PREDICTED: fatty acyl-CoA reductase 3-li	0.805	0.328	0.520	1e-40
356550113	413	PREDICTED: fatty acyl-CoA reductase 3-li	0.805	0.389	0.520	2e-40
449443606	492	PREDICTED: LOW QUALITY PROTEIN: fatty ac	0.83	0.337	0.491	2e-39
224105053	382	predicted protein [Populus trichocarpa]	0.83	0.434	0.531	4e-39
356543578	490	PREDICTED: fatty acyl-CoA reductase 3-li	0.815	0.332	0.520	9e-39
225436689	490	PREDICTED: fatty acyl-CoA reductase 3 [V	0.825	0.336	0.479	2e-38
356542730	416	PREDICTED: fatty acyl-CoA reductase 3-li	0.83	0.399	0.502	4e-38
356542728	493	PREDICTED: fatty acyl-CoA reductase 3-li	0.83	0.336	0.502	4e-38

>gi|224078578|ref|XP_002305561.1| predicted protein [Populus trichocarpa] gi|222848525|gb|EEE86072.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 114/178 (64%), Gaps = 7/178 (3%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D   + D+IPADMVVNA++VAMVAHA +     IY+VGSS+RNPV + N+ D+ FDYFTK
Sbjct: 189 DITGIVDVIPADMVVNAIVVAMVAHANRPFDDAIYQVGSSVRNPVRYTNLQDFGFDYFTK 248

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
           K WI   GKPVKV +V + S M  FHGYM I+YLL LK            N   C YFE 
Sbjct: 249 KPWIGKDGKPVKVGRVKVLSSMANFHGYMAIRYLLLLKGLELA-------NIAFCHYFEN 301

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSFILSAL 194
           M T   RK  FVM LVE+Y P+L     FDD NTEKLRMA  EN +ETD+F F   A+
Sbjct: 302 MYTDLNRKIKFVMKLVELYRPYLFFRGVFDDMNTEKLRMAAGENNIETDMFYFDPKAI 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543580|ref|XP_003540238.1| PREDICTED: fatty acyl-CoA reductase 3-like [Glycine max]

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 111/169 (65%), Gaps = 8/169 (4%)

Query: 21  VFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWI 80
           V D++PADMVVNAM+VAMVAHA+Q S + +Y VGSSLRNP+T++N+ DY   YFT K WI
Sbjct: 305 VVDVVPADMVVNAMLVAMVAHAKQPSDI-VYHVGSSLRNPLTYLNLQDYGLKYFTAKPWI 363

Query: 81  DNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTG 140
           +  G PVKV +V + + M  F  YM I+YLLPLK            NT  CQYF G    
Sbjct: 364 NKDGTPVKVGRVTVLTDMDSFQRYMFIRYLLPLK-------GLELANTALCQYFRGTYLE 416

Query: 141 RRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
             RK   VM +VE+Y P++  +  FDD NTEKLRMA +++  ETD+F F
Sbjct: 417 LHRKIQVVMRMVELYRPYMFFDGVFDDMNTEKLRMAAKQSGTETDLFYF 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550111|ref|XP_003543433.1| PREDICTED: fatty acyl-CoA reductase 3-like isoform 1 [Glycine max]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 109/169 (64%), Gaps = 8/169 (4%)

Query: 21  VFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWI 80
           V D +PADMVVNAM+VAMVAHA Q S + IY VGSSLRNP+T++N+ DY   YFT K WI
Sbjct: 305 VVDAVPADMVVNAMLVAMVAHANQPSDI-IYHVGSSLRNPLTYLNLQDYGLKYFTAKPWI 363

Query: 81  DNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTG 140
           +  G PVKV +V + + M  F  YM I+YLLPLK            NT  CQYF G    
Sbjct: 364 NKDGTPVKVGRVTVLTDMDSFQRYMFIRYLLPLK-------GLELANTALCQYFRGTYLE 416

Query: 141 RRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
             RK   VM +VE+Y P++  N  FDD NTEKLR+A +++  ETD+F F
Sbjct: 417 LHRKIQVVMRMVELYRPYMFFNGVFDDINTEKLRIAAKQSGTETDLFYF 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550113|ref|XP_003543434.1| PREDICTED: fatty acyl-CoA reductase 3-like isoform 2 [Glycine max]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 109/169 (64%), Gaps = 8/169 (4%)

Query: 21  VFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWI 80
           V D +PADMVVNAM+VAMVAHA Q S + IY VGSSLRNP+T++N+ DY   YFT K WI
Sbjct: 228 VVDAVPADMVVNAMLVAMVAHANQPSDI-IYHVGSSLRNPLTYLNLQDYGLKYFTAKPWI 286

Query: 81  DNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTG 140
           +  G PVKV +V + + M  F  YM I+YLLPLK            NT  CQYF G    
Sbjct: 287 NKDGTPVKVGRVTVLTDMDSFQRYMFIRYLLPLK-------GLELANTALCQYFRGTYLE 339

Query: 141 RRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
             RK   VM +VE+Y P++  N  FDD NTEKLR+A +++  ETD+F F
Sbjct: 340 LHRKIQVVMRMVELYRPYMFFNGVFDDINTEKLRIAAKQSGTETDLFYF 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443606|ref|XP_004139568.1| PREDICTED: LOW QUALITY PROTEIN: fatty acyl-CoA reductase 3-like [Cucumis sativus]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 110/173 (63%), Gaps = 7/173 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D   + D+IPADMVVNAM+VAMVAHA Q S   IY V SS+RNP+ +  + +Y F YF+ 
Sbjct: 302 DVNALVDVIPADMVVNAMLVAMVAHASQLSSYTIYHVSSSMRNPIMYRKLQEYGFHYFSA 361

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
             WI+  G+PVKV KV I + M  FH YM I+YL+ LK  G         N   C YF+G
Sbjct: 362 NPWINKDGQPVKVGKVTILNDMASFHRYMTIRYLVFLK--GLEVL-----NIALCHYFDG 414

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
           +L    RK  +V+ LV++YGP+L     FDD NTEKLR+A + N +ETD+F F
Sbjct: 415 ILFNFNRKIKYVLRLVDLYGPYLFFKGVFDDINTEKLRIAAKANGIETDLFYF 467

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105053|ref|XP_002313668.1| predicted protein [Populus trichocarpa] gi|222850076|gb|EEE87623.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 109/173 (63%), Gaps = 7/173 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D   + D+IPADMVVNA+IVAMVAHA + S   IY+VGSS+RNP+ + N  D  F+YFT 
Sbjct: 192 DITGIVDVIPADMVVNAIIVAMVAHANRPSENAIYQVGSSVRNPMRYTNFQDCGFNYFTN 251

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
           K WI   GKPVKV +V + S M  FH YM I+YLL LK            N   C YFE 
Sbjct: 252 KPWIGKDGKPVKVGRVKVLSSMASFHRYMAIRYLLLLKGLELA-------NMAFCHYFED 304

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
             +   RK  FVM LVE+Y P+L     FDD NTEKLRMA REN +ETD+F F
Sbjct: 305 KYSDLNRKIKFVMKLVELYRPYLFFRGVFDDLNTEKLRMAARENNLETDMFYF 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543578|ref|XP_003540237.1| PREDICTED: fatty acyl-CoA reductase 3-like [Glycine max]

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 109/171 (63%), Gaps = 8/171 (4%)

Query: 19  ETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKS 78
           E VFD+IPADMVVNAM+VAMVAHA Q S + IY VGSS+ NPV ++N+ DYS  YFT+K 
Sbjct: 303 EAVFDVIPADMVVNAMLVAMVAHANQPSDI-IYHVGSSVVNPVMYLNLRDYSVRYFTEKP 361

Query: 79  WIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGML 138
           WI+  GKPVKV K  I   M  F  YM I+YLLPLK            N   CQYF+ M 
Sbjct: 362 WINRDGKPVKVGKFTILRNMDSFRKYMYIRYLLPLK-------GLELVNAASCQYFQKMY 414

Query: 139 TGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
               RK   V+ LVE+Y P+L  N  FD+ NTEKL  + R+  +ET++F F
Sbjct: 415 LDFNRKIRTVLRLVELYKPYLFFNGVFDNTNTEKLLSSARQGGVETELFYF 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436689|ref|XP_002263184.1| PREDICTED: fatty acyl-CoA reductase 3 [Vitis vinifera] gi|296084945|emb|CBI28354.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 110/173 (63%), Gaps = 8/173 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D E + D IP DMVVN MIVAMVAHA Q   + IY+VGSSL+NP+  +++ D+ F YF +
Sbjct: 301 DPECILDAIPGDMVVNCMIVAMVAHANQPCEI-IYQVGSSLKNPLKLLDLHDFFFKYFHE 359

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
             WI+  GK VKV+K+I+FS    FHGY+ ++Y+LPLK+  F        N L CQ   G
Sbjct: 360 NPWINKDGKAVKVSKLILFSTTFVFHGYLAVRYMLPLKVLQFL-------NFLLCQILCG 412

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
           M T   RK   +M LVE+Y P+L     FDD NT+KLR+A  E+  + D+F F
Sbjct: 413 MCTDHNRKIKMLMYLVELYKPYLFFKGIFDDLNTDKLRLAATESSSKADLFYF 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542730|ref|XP_003539818.1| PREDICTED: fatty acyl-CoA reductase 3-like isoform 2 [Glycine max]

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 107/173 (61%), Gaps = 7/173 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D + + D IPADMVVNA++VAMVAHA   S   IY VGSS+R P+ + N+ +Y F YFT 
Sbjct: 226 DLKAIVDAIPADMVVNAILVAMVAHANHPSDDVIYHVGSSVRRPLRYGNLQEYGFRYFTA 285

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
           K  I+  G+PVKV KV + S M  F  YM I+YLL LK            NT  CQYF+G
Sbjct: 286 KPCINKDGRPVKVGKVTVLSNMDSFRRYMFIRYLLVLK-------GLELANTAFCQYFQG 338

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
                 RK   VM LV++Y P+L   A FDD NTEKLRMA R+  +ETD+F F
Sbjct: 339 TYLNLNRKIQIVMRLVDLYKPYLFFKAAFDDMNTEKLRMAARQGGVETDLFYF 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542728|ref|XP_003539817.1| PREDICTED: fatty acyl-CoA reductase 3-like isoform 1 [Glycine max]

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 107/173 (61%), Gaps = 7/173 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D + + D IPADMVVNA++VAMVAHA   S   IY VGSS+R P+ + N+ +Y F YFT 
Sbjct: 303 DLKAIVDAIPADMVVNAILVAMVAHANHPSDDVIYHVGSSVRRPLRYGNLQEYGFRYFTA 362

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
           K  I+  G+PVKV KV + S M  F  YM I+YLL LK            NT  CQYF+G
Sbjct: 363 KPCINKDGRPVKVGKVTVLSNMDSFRRYMFIRYLLVLK-------GLELANTAFCQYFQG 415

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
                 RK   VM LV++Y P+L   A FDD NTEKLRMA R+  +ETD+F F
Sbjct: 416 TYLNLNRKIQIVMRLVDLYKPYLFFKAAFDDMNTEKLRMAARQGGVETDLFYF 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2171107	491	FAR1 "fatty acid reductase 1"	0.83	0.338	0.373	1.1e-21
TAIR|locus:2134278	493	CER4 "ECERIFERUM 4" [Arabidops	0.825	0.334	0.346	2.3e-20
TAIR|locus:2076028	493	FAR4 "fatty acid reductase 4"	0.83	0.336	0.321	4.6e-18
TAIR|locus:2076023	496	FAR5 "fatty acid reductase 5"	0.75	0.302	0.350	2.6e-16
TAIR|locus:2076038	496	FAR8 "fatty acid reductase 8"	0.78	0.314	0.306	2.3e-14
TAIR|locus:2176407	409	FAR7 "fatty acid reductase 7"	0.79	0.386	0.275	1.3e-11

TAIR|locus:2171107 FAR1 "fatty acid reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 65/174 (37%), Positives = 87/174 (50%)

Query:    17 DTETVFDMIPXXXXXXXXXXXXXXXXRQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
             D+ +VFD+IP                  +    IY VGSS +NPVTF  + D++  YF K
Sbjct:   299 DSNSVFDLIPADMVVNAMVAAATAHSGDTGIQAIYHVGSSCKNPVTFGQLHDFTARYFAK 358

Query:    77 KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
             +  I   G P+ V K  I S M  F  YM ++Y LPL++       Y W +     Y + 
Sbjct:   359 RPLIGRNGSPIIVVKGTILSTMAQFSLYMTLRYKLPLQILRLINIVYPWSHG--DNYSD- 415

Query:   137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETD-IFSF 189
              L+   RK    M LVE+Y P+LL    FDD NTE+LRM  +EN+ E D  F F
Sbjct:   416 -LS---RKIKLAMRLVELYQPYLLFKGIFDDLNTERLRMKRKENIKELDGSFEF 465

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009556 "microsporogenesis" evidence=ISS

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IDA

GO:0009611 "response to wounding" evidence=IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0010345 "suberin biosynthetic process" evidence=IMP

GO:0050062 "long-chain-fatty-acyl-CoA reductase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2134278 CER4 "ECERIFERUM 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 2.3e-20, P = 2.3e-20
 Identities = 60/173 (34%), Positives = 85/173 (49%)

Query:    17 DTETVFDMIPXXXXXXXXXXXXXXXXRQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
             D + V D++P                 +   + IY VGSSLRNP+      + ++ YF+ 
Sbjct:   305 DLDAVSDVMPADMVVNSILVSMAAQAGKQEEI-IYHVGSSLRNPMKNSKFPELAYRYFSI 363

Query:    77 KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
             K W +  GK VKV  + I S M  FH YM I+YL+ LK  G         N + C+ FE 
Sbjct:   364 KPWTNKEGKVVKVGAIEILSSMRSFHRYMTIRYLIALK--GLEL-----VNIILCKLFEK 416

Query:   137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
                   +K NF+  LV++Y P+L     FDD NTEKLR    +  +E ++F F
Sbjct:   417 EFQYFNKKINFIFRLVDLYQPYLFFYGIFDDSNTEKLRKMVSKTGVENEMFYF 469

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009556 "microsporogenesis" evidence=ISS

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IDA;IMP

TAIR|locus:2076028 FAR4 "fatty acid reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 56/174 (32%), Positives = 81/174 (46%)

Query:    17 DTETVFDMIPXXXXXXXXXXXXXXXXRQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
             D  +V D+IP                 +     +Y VGSS +NP+TF  + D +  YFTK
Sbjct:   301 DPNSVLDLIPVDMVANAMVTAAAIHAGKLGSQTVYHVGSSCKNPITFEQIHDLAASYFTK 360

Query:    77 KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
                +   G  + V+K  I S M  F  YM ++Y LPL++       Y W N      ++ 
Sbjct:   361 NPLVRRDGSSILVSKGTILSTMAQFSFYMTLRYKLPLQMLRLIYVIYPWWNG---NKYKD 417

Query:   137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRE-NMMETDIFSF 189
             +     RK    M LV++Y P++L    FDD NTEKLR+  +E N     +F F
Sbjct:   418 I----DRKIKLAMRLVDLYRPYVLFKGIFDDTNTEKLRLKRKEINKEMYGLFEF 467

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009556 "microsporogenesis" evidence=ISS

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0010345 "suberin biosynthetic process" evidence=IMP

GO:0050062 "long-chain-fatty-acyl-CoA reductase activity" evidence=IDA

TAIR|locus:2076023 FAR5 "fatty acid reductase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 55/157 (35%), Positives = 74/157 (47%)

Query:    17 DTETVFDMIPXXXXXXXXXXXXXXXXRQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
             D  +V DMIP                  S    +Y VGSS +NPVTF  + + +  YFTK
Sbjct:   302 DVNSVCDMIPVDMVANAMITAAAKHAGGSGVHMVYHVGSSHQNPVTFGEIHEIAVRYFTK 361

Query:    77 KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
                    G  + V+KV     M  F  YM ++Y LPL+L       Y W+N    +Y + 
Sbjct:   362 NPLRSRNGSLITVSKVRFIPTMALFSLYMTLRYKLPLQLLKLVDIIYPWRNG--DKYGD- 418

Query:   137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKL 173
                 + RK   VM LVE+Y P++L    FDDRNT+ L
Sbjct:   419 ----KNRKIELVMRLVELYEPYVLFKGIFDDRNTKSL 451

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0009556 "microsporogenesis" evidence=ISS

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0010345 "suberin biosynthetic process" evidence=IMP

GO:0050062 "long-chain-fatty-acyl-CoA reductase activity" evidence=IDA

TAIR|locus:2076038 FAR8 "fatty acid reductase 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 50/163 (30%), Positives = 77/163 (47%)

Query:    17 DTETVFDMIPXXXXXXXXXXXXXXXXRQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
             D  +V DMIP                  S    +Y+VGSS +NP+ +  + +  F YFTK
Sbjct:   302 DVNSVCDMIPADMVANAMIAAAATHAGGSKVHMVYQVGSSHQNPIIYGEIREILFCYFTK 361

Query:    77 KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
              S     G  + V+K+ +   +  F  YM I+Y LP++L      D  + +    +Y   
Sbjct:   362 NSLRSRNGSMITVSKMKLIPTLALFSLYMTIRYKLPVQLLKLV--DIIYPSREGDEY--- 416

Query:   137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRE 179
                 + RK + VM LV++Y P++L    FDDRNT+ L    +E
Sbjct:   417 --KNKNRKIDMVMRLVKLYEPYVLFKGIFDDRNTKNLCAKQKE 457

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009556 "microsporogenesis" evidence=ISS

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IDA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2176407 FAR7 "fatty acid reductase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 46/167 (27%), Positives = 70/167 (41%)

Query:    17 DTETVFDMIPXXXXXXXXXXXXXXXXRQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
             D +TV D+IP                  S    +Y VGSS +NPV +  + +    YF K
Sbjct:   228 DQKTVCDIIPVDMVVNAMIAIAADHCHDSGSHTVYHVGSSNQNPVIYKQIYEMMSRYFMK 287

Query:    77 KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
                +   G  + V KV   S +  F  Y  ++Y LP+++ G         + +     + 
Sbjct:   288 SPLVGRNGMLI-VPKVTRISTLARFRVYTNLRYKLPIQILGLL-------SVISLSQRDK 339

Query:   137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMME 183
                   RK    M LV++Y P++L    FDD+N E LR+      ME
Sbjct:   340 FAL-HNRKFKMAMRLVKLYKPYVLFKGIFDDKNMETLRIKNEAKDME 385


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.140   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       184   0.00078  110 3  11 22  0.36    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  172 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.52u 0.15s 14.67t   Elapsed:  00:00:01
  Total cpu time:  14.52u 0.15s 14.67t   Elapsed:  00:00:01
  Start:  Mon May 20 18:48:19 2013   End:  Mon May 20 18:48:20 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0009556 "microsporogenesis" evidence=ISS

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
PLN02996	491	PLN02996, PLN02996, fatty acyl-CoA reductase	3e-62
PLN02503	605	PLN02503, PLN02503, fatty acyl-CoA reductase 2	3e-19
cd05236	320	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F	6e-10

>gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase

 Score =  200 bits (510), Expect = 3e-62
 Identities = 81/174 (46%), Positives = 101/174 (58%), Gaps = 8/174 (4%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK 76
           D  +V D+IPADMVVNAMIVAM AHA       IY VGSSL+NPV F N+ D+++ YF+K
Sbjct: 300 DPNSVLDVIPADMVVNAMIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSK 359

Query: 77  KSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEG 136
             WI+  G PVKV K  I S M  F  YM I+YLLPLK            N +  + +  
Sbjct: 360 NPWINKEGSPVKVGKGTILSTMASFSLYMTIRYLLPLKALQLV-------NIILPKRYGD 412

Query: 137 MLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRE-NMMETDIFSF 189
             T   RK   VM LV++Y P++     FDD NTEKLR+  +E    E D+F F
Sbjct: 413 KYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDF 466

Length = 491

>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2

 Score = 84.5 bits (209), Expect = 3e-19
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 11/174 (6%)

Query: 17  DTETVFDMIPADMVVNAMIVAMVAH-ARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT 75
           D   V D++PADMVVNA + AM  H       +N+Y++ SS+ NP+ F ++    ++++ 
Sbjct: 414 DPNGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYK 473

Query: 76  KKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFE 135
              ++D+ G+P+ V  + +FS M  F  ++    LL   L+G +  D         Q  E
Sbjct: 474 SSPYMDSKGRPIHVPPMKLFSSMEDFSSHLWRDALLRSGLAGMSSSDRK-----LSQKLE 528

Query: 136 GMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIFSF 189
            +      +  +   L  IY P+      FD+ NT++L     E   E   F F
Sbjct: 529 NICAKSVEQAKY---LASIYEPYTFYGGRFDNSNTQRLMERMSEE--EKAEFGF 577

Length = 605

>gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 21  VFDMIPADMVVNAMIVAMVAHA-RQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKK 77
           V D+IP D+V NA++ A      R+   + +Y  GSS  NP T+    +    Y  K 
Sbjct: 262 VADIIPVDVVANALLAAAAYSGVRKPRELEVYHCGSSDVNPFTWGEAEELINQYLKKN 319

SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	100.0
PLN02996	491	fatty acyl-CoA reductase	100.0
PLN02503	605	fatty acyl-CoA reductase 2	99.97
PF03015	94	Sterile: Male sterility protein; InterPro: IPR0042	99.81
cd09071	92	FAR_C C-terminal domain of fatty acyl CoA reductas	99.75
PRK07201	657	short chain dehydrogenase; Provisional	93.91
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	86.56
TIGR01746	367	Thioester-redct thioester reductase domain. It has	85.53
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	84.93
PLN02427	386	UDP-apiose/xylose synthase	83.96
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	83.23
PF06956	183	RtcR: Regulator of RNA terminal phosphate cyclase;	83.15
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	82.52
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	80.54
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	80.08

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=100.00  E-value=6.6e-41  Score=296.77  Aligned_cols=167  Identities=30%  Similarity=0.309  Sum_probs=160.0

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCC--CceEEEeecCCCCcccHHHHHHHHHHHhhcCCCCCCCCCceee
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSS--YVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKV   89 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~--~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~~~~~g~~~~~   89 (200)
                      +++.+|++.++|+||||+|||+||+++|.++.+.+  +++|||++||..||+||+++.+.+..++.++|+++.    +|+
T Consensus       267 r~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~~e~~~~~~~~~Pl~~~----iw~  342 (467)
T KOG1221|consen  267 RCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDFIELALRYFEKIPLEKM----IWY  342 (467)
T ss_pred             EEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHHHHHHHHhcccCCcccc----eec
Confidence            89999999999999999999999999999987644  489999999999999999999999999999999998    999


Q ss_pred             eeeEEecChhHHHHHHHHHhhchhhhhccccccchhhHhhhhhhhhhhHHHHHHHHhhHHHHHHhccCcccceEEEeChh
Q 040322           90 TKVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRN  169 (200)
Q Consensus        90 p~~~~~~~~~~~~~~~~l~~~lPa~l~D~~~~~~~~~~~~~~~~~~~~~~k~~rki~~~~~~~~~~~~Ft~~~w~F~~~N  169 (200)
                      |...+++|.+.|.++.+++|.+||+++|+       ++  +..|++|.+.+.++|+.   ++.++|+||+.++|+|+++|
T Consensus       343 P~~~~~sn~~~f~~~~~~~h~lPa~~~d~-------~~--~i~g~k~~~~k~~~ki~---~~~~~l~~f~~~~w~Fd~~n  410 (467)
T KOG1221|consen  343 PFGTLTSNPWLFNLAAFLYHTLPAYILDL-------LL--RLLGKKPRLVKLYRKIH---KLVKLLEPFSLFKWIFDNKN  410 (467)
T ss_pred             cCceeeecHhHHHHHHHHHHHhhHHHHHH-------HH--HHhCCChhhhHHHHHHH---HHHHhhhhheeceEEecCcc
Confidence            99999999999999999999999999999       87  66699999999999999   99999999999999999999


Q ss_pred             HHHHHHHcCcCcccccceecccccccc
Q 040322          170 TEKLRMATRENMMETDIFSFILSALIG  196 (200)
Q Consensus       170 ~~~L~~~m~~~~~dr~~F~fD~~~i~~  196 (200)
                      +.+|++.|++  +|+++|+||++.++-
T Consensus       411 ~~~L~~~~~~--~d~~~f~fd~~~ldW  435 (467)
T KOG1221|consen  411 TEKLREKMSE--EDKRLFNFDMKQLDW  435 (467)
T ss_pred             HHHHHHhCCH--HHHhhcCCCcccCCH
Confidence            9999999999  999999999999874

>PLN02996 fatty acyl-CoA reductase

Probab=100.00  E-value=1.5e-34  Score=261.68  Aligned_cols=177  Identities=46%  Similarity=0.715  Sum_probs=160.4

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcCCCCCCCCCceeeee
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTK   91 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~~~~~g~~~~~p~   91 (200)
                      +.++||++.+.|+||||.||||+++++|..........|||++||..||++|+++.+.+.+++.++|+.+.+|+++|+|.
T Consensus       295 ~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~~~~~~~~~~~p~  374 (491)
T PLN02996        295 TCFLADPNSVLDVIPADMVVNAMIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPWINKEGSPVKVGK  374 (491)
T ss_pred             eEEecCCCeecceecccHHHHHHHHHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCCcCCCCCeEeeCC
Confidence            57899999999999999999999999997432222357999999999999999999999999999999988889999999


Q ss_pred             eEEecChhHHHHHHHHHhhchhhhhccccccchhhHhhhhhhhhhhHHHHHHHHhhHHHHHHhccCcccceEEEeChhHH
Q 040322           92 VIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTE  171 (200)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~lPa~l~D~~~~~~~~~~~~~~~~~~~~~~k~~rki~~~~~~~~~~~~Ft~~~w~F~~~N~~  171 (200)
                      +.++++.+.|+++.++.|.+|++++|+       +..+.+.+++|++.+++||++++.+++++|+|||+++|+|+|+|++
T Consensus       375 ~~~~~~~~~~~~~~~~~~~lp~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~  447 (491)
T PLN02996        375 GTILSTMASFSLYMTIRYLLPLKALQL-------VNIILPKRYGDKYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTE  447 (491)
T ss_pred             ceecCcHHHHHHHHHHHHHhHHHHHHH-------HHHHhhhccChHHHHHHHHHHHHHHHHHHhhccccceEEEccHHHH
Confidence            999999999999999999999999999       7744466789999999999977778899999999999999999999


Q ss_pred             HHHHHcCcCc-ccccceeccccccc
Q 040322          172 KLRMATRENM-METDIFSFILSALI  195 (200)
Q Consensus       172 ~L~~~m~~~~-~dr~~F~fD~~~i~  195 (200)
                      +|++.|++.| +||++|+||++.|+
T Consensus       448 ~l~~~~~~~d~~d~~~f~~d~~~~~  472 (491)
T PLN02996        448 KLRIKRKETGKEEADMFDFDPKSID  472 (491)
T ss_pred             HHHHHCCccccccccEeccCcccCC
Confidence            9999999955 56999999999886

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.97  E-value=4.1e-31  Score=243.03  Aligned_cols=167  Identities=25%  Similarity=0.365  Sum_probs=133.7

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhc-CCCceEEEeecCCCCcccHHHHHHHHHHHhhcCCCCCCCCCceeee
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQ-SSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVT   90 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~-~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~~~~~g~~~~~p   90 (200)
                      ++++||++.++|+||||+||||+|+++|.+... ..+.+||||+||..||++|+++.+.+.+++.++|+.+..|.++|.|
T Consensus       409 r~~~~~~~~~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~P~~~~~~~~~~~~  488 (605)
T PLN02503        409 TGFLADPNGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSSPYMDSKGRPIHVP  488 (605)
T ss_pred             eEEEeCCCeeEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhCCcccccCcceecc
Confidence            679999999999999999999999997765432 2357899999999999999999999999999999999855555555


Q ss_pred             eeEEecChhHHHHHHHHHhhchhhhhccccccchhhHhhh---hhhhhhhHHHHHHH-----HhhHHHHHHhccCcccce
Q 040322           91 KVIIFSRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLC---CQYFEGMLTGRRRK-----TNFVMPLVEIYGPHLLSN  162 (200)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~lPa~l~D~~~~~~~~~~~~~---~~~~~~~~~k~~rk-----i~~~~~~~~~~~~Ft~~~  162 (200)
                      ...+.     +.+..++.|.    +.|.       ++...   ..++++++.+.+++     +.++.+++++|+|||+++
T Consensus       489 ~~~~~-----~~~~~~~~h~----~~d~-------~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ft~~~  552 (605)
T PLN02503        489 PMKLF-----SSMEDFSSHL----WRDA-------LLRSGLAGMSSSDRKLSQKLENICAKSVEQAKYLASIYEPYTFYG  552 (605)
T ss_pred             Cceeh-----hhHHHHHHHH----HHHH-------HHHHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHhhheeCe
Confidence            55544     4444444553    4666       44221   11366777776654     445668999999999999


Q ss_pred             EEEeChhHHHHHHHcCcCcccccceecccccccc
Q 040322          163 ATFDDRNTEKLRMATRENMMETDIFSFILSALIG  196 (200)
Q Consensus       163 w~F~~~N~~~L~~~m~~~~~dr~~F~fD~~~i~~  196 (200)
                      |+|+|+|+++|++.|+|  +||++|+||++.|+-
T Consensus       553 w~F~~~n~~~L~~~ms~--~Dr~~F~~D~~~idW  584 (605)
T PLN02503        553 GRFDNSNTQRLMERMSE--EEKAEFGFDVGSIDW  584 (605)
T ss_pred             EEEechHHHHHHHhCCH--HHhhccCCCcCCCCH
Confidence            99999999999999999  999999999999863

>PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms

Probab=99.81  E-value=1.2e-20  Score=135.10  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=71.3

Q ss_pred             HHhhchhhhhccccccchhhHhhhhhhhhhhHHHHHHHHhhHHHHHHhccCcccceEEEeChhHHHHHHHcCcCcccccc
Q 040322          107 IQYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDI  186 (200)
Q Consensus       107 l~~~lPa~l~D~~~~~~~~~~~~~~~~~~~~~~k~~rki~~~~~~~~~~~~Ft~~~w~F~~~N~~~L~~~m~~~~~dr~~  186 (200)
                      ++|.+||.++|+       ++  ++.|++|++.++++|++   +++++++||++++|+|+|+|+++|++.|+|  +|+++
T Consensus         1 ~~h~lPA~~~D~-------~~--~l~g~kp~~~k~~~ki~---~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~--~D~~~   66 (94)
T PF03015_consen    1 LFHFLPAYLLDL-------IL--RLFGQKPRMVKIYRKIR---KALEVLEYFTTNEWIFDNDNTRRLWERLSP--EDREI   66 (94)
T ss_pred             CcchHHHHHHHH-------HH--HHhCCChHHHHHHHHHH---HHHHHHHHHHhCceeecchHHHHHHHhCch--hcCce
Confidence            358999999999       88  77899999999999999   999999999999999999999999999999  99999


Q ss_pred             eeccccccc
Q 040322          187 FSFILSALI  195 (200)
Q Consensus       187 F~fD~~~i~  195 (200)
                      |+||+++|+
T Consensus        67 F~fD~~~id   75 (94)
T PF03015_consen   67 FNFDIRSID   75 (94)
T ss_pred             ecCCCCCCC
Confidence            999999886

The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process

>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases

Probab=99.75  E-value=5.4e-19  Score=125.78  Aligned_cols=74  Identities=22%  Similarity=0.196  Sum_probs=70.0

Q ss_pred             HhhchhhhhccccccchhhHhhhhhhhhhhHHHHHHHHhhHHHHHHhccCcccceEEEeChhHHHHHHHcCcCcccccce
Q 040322          108 QYLLPLKLSGFTCRDYNWQNTLCCQYFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTEKLRMATRENMMETDIF  187 (200)
Q Consensus       108 ~~~lPa~l~D~~~~~~~~~~~~~~~~~~~~~~k~~rki~~~~~~~~~~~~Ft~~~w~F~~~N~~~L~~~m~~~~~dr~~F  187 (200)
                      .|.+||.++|.       +.  ...|++|++.++++|+.   +++++++||++++|+|+++|+++|++.|+|  +||++|
T Consensus         2 ~~~lpa~~~d~-------~~--~l~g~~~~~~~~~~k~~---~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~--~Dr~~F   67 (92)
T cd09071           2 LHLLPAYLLDL-------LL--RLLGRKPRLLKLYRKIH---KLLDLLEYFTTNEWRFDNDNTRALWERLSE--EDRELF   67 (92)
T ss_pred             cccchHHHHHH-------HH--HHhCCChHHHHHHHHHH---HHHHHhhccccCeEEeeCcHHHHHHHHCCH--HHHHhC
Confidence            47899999999       77  66699999999999999   999999999999999999999999999999  999999


Q ss_pred             eccccccc
Q 040322          188 SFILSALI  195 (200)
Q Consensus       188 ~fD~~~i~  195 (200)
                      +||+++|+
T Consensus        68 ~fD~~~id   75 (92)
T cd09071          68 NFDIRSID   75 (92)
T ss_pred             CCCCCCCC
Confidence            99999886

C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.

>PRK07201 short chain dehydrogenase; Provisional

Probab=93.91  E-value=0.2  Score=46.94  Aligned_cols=55  Identities=11%  Similarity=0.104  Sum_probs=41.2

Q ss_pred             ecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           16 RDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        16 ~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      ++.....++||||.|+++++.++-.  . .....+||++++  .+++|.++.+.+.+...
T Consensus       214 ~~~~~~~~~v~vddva~ai~~~~~~--~-~~~g~~~ni~~~--~~~s~~el~~~i~~~~g  268 (657)
T PRK07201        214 GPDGGRTNIVPVDYVADALDHLMHK--D-GRDGQTFHLTDP--KPQRVGDIYNAFARAAG  268 (657)
T ss_pred             cCCCCeeeeeeHHHHHHHHHHHhcC--c-CCCCCEEEeCCC--CCCcHHHHHHHHHHHhC
Confidence            4455677999999999998766531  1 123469999875  57999999999888754

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=86.56  E-value=2.1  Score=36.78  Aligned_cols=58  Identities=10%  Similarity=0.205  Sum_probs=45.7

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      .++++.+..-|+|-||-++.+++.++-.  .  ....+||++|+  +++++.++.+.+.+...+
T Consensus       215 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~--~--~~~~~yni~~~--~~~s~~~~~~~i~~~~~~  272 (355)
T PRK10217        215 PVYGNGQQIRDWLYVEDHARALYCVATT--G--KVGETYNIGGH--NERKNLDVVETICELLEE  272 (355)
T ss_pred             eEeCCCCeeeCcCcHHHHHHHHHHHHhc--C--CCCCeEEeCCC--CcccHHHHHHHHHHHhcc
Confidence            3568888899999999999998776532  1  22469999996  589999999988887654

>TIGR01746 Thioester-redct thioester reductase domain

Probab=85.53  E-value=2  Score=36.40  Aligned_cols=50  Identities=20%  Similarity=0.290  Sum_probs=36.9

Q ss_pred             cccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHH
Q 040322           20 TVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFD   72 (200)
Q Consensus        20 ~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~   72 (200)
                      ...|.+|||.|+.+++.++... .......+||++++  ++++|.++.+.+.+
T Consensus       228 ~~~~~~~vddva~ai~~~~~~~-~~~~~~~~~~v~~~--~~~s~~e~~~~i~~  277 (367)
T TIGR01746       228 LTEDLTPVDYVARAIVALSSQP-AASAGGPVFHVVNP--EPVSLDEFLEWLER  277 (367)
T ss_pred             cccCcccHHHHHHHHHHHHhCC-CcccCCceEEecCC--CCCCHHHHHHHHHH
Confidence            3678999999999987665422 11011469999874  68999999998876

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=84.93  E-value=2.5  Score=35.11  Aligned_cols=58  Identities=17%  Similarity=0.271  Sum_probs=44.1

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      .+.++.+...|.|.||-++.++..+.-.    .....+||++++  .++++.++.+.+.+.+..
T Consensus       205 ~~~~~g~~~~~~i~v~D~a~~~~~~~~~----~~~~~~~~~~~~--~~~s~~~~~~~i~~~~~~  262 (317)
T TIGR01181       205 PVYGDGQQVRDWLYVEDHCRAIYLVLEK----GRVGETYNIGGG--NERTNLEVVETILELLGK  262 (317)
T ss_pred             eEeCCCceEEeeEEHHHHHHHHHHHHcC----CCCCceEEeCCC--CceeHHHHHHHHHHHhCC
Confidence            3456777888999999999997666531    122369999885  579999999999987643

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PLN02427 UDP-apiose/xylose synthase

Probab=83.96  E-value=2.9  Score=36.58  Aligned_cols=61  Identities=15%  Similarity=0.217  Sum_probs=44.5

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      .+.++.+...|+|-||-|+++++.++-...  .....+||++++. .++++.++.+.+.+.+..
T Consensus       248 ~~~g~g~~~r~~i~V~Dva~ai~~al~~~~--~~~g~~yni~~~~-~~~s~~el~~~i~~~~g~  308 (386)
T PLN02427        248 KLVDGGQSQRTFVYIKDAIEAVLLMIENPA--RANGHIFNVGNPN-NEVTVRQLAEMMTEVYAK  308 (386)
T ss_pred             EEECCCCceECcEeHHHHHHHHHHHHhCcc--cccCceEEeCCCC-CCccHHHHHHHHHHHhcc
Confidence            345666777899999999999887653211  1124699998752 589999999999887653

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=83.23  E-value=2.5  Score=35.32  Aligned_cols=54  Identities=20%  Similarity=0.338  Sum_probs=42.6

Q ss_pred             ecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           16 RDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        16 ~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      ++.+...++|.||-++.+++.++..  .   ...+||++++  .|+++.++.+.+.+.+..
T Consensus       208 ~~g~~~~~~i~v~D~a~~i~~~~~~--~---~~~~yni~~~--~~~s~~e~~~~i~~~~g~  261 (314)
T TIGR02197       208 KDGEQLRDFVYVKDVVDVNLWLLEN--G---VSGIFNLGTG--RARSFNDLADAVFKALGK  261 (314)
T ss_pred             CCCCceeeeEEHHHHHHHHHHHHhc--c---cCceEEcCCC--CCccHHHHHHHHHHHhCC
Confidence            4566778999999999998877653  1   2359999886  479999999999887543

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PF06956 RtcR: Regulator of RNA terminal phosphate cyclase; InterPro: IPR009715 RtcR is a sigma54-dependent enhancer binding protein [] that activates transcription of the rtcBA operon

Probab=83.15  E-value=11  Score=30.10  Aligned_cols=69  Identities=14%  Similarity=0.027  Sum_probs=51.9

Q ss_pred             CCceEEEeecCCCCcccHHHHHHHHHHHhhcCCCCCCCCCceeeeeeEEecChhHHHHHHHHH---hhchhhhhcc
Q 040322           46 SYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIFSRMVGFHGYMKIQ---YLLPLKLSGF  118 (200)
Q Consensus        46 ~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~~~~~g~~~~~p~~~~~~~~~~~~~~~~l~---~~lPa~l~D~  118 (200)
                      ++..|--..-...||..+++++....++.+.+|+.--+.    -+-+.+|+....-+++.|++   +++||.++..
T Consensus        67 P~TeV~~~~v~l~dPWDfeeVY~~l~dfa~~Y~Fd~e~E----~YlvHITTGTHVaQIc~FLL~Esr~lPa~LlQt  138 (183)
T PF06956_consen   67 PETEVRLHEVELADPWDFEEVYAALHDFARGYPFDPENE----DYLVHITTGTHVAQICWFLLTESRYLPARLLQT  138 (183)
T ss_pred             CCCEEEEEEeccCCCccHHHHHHHHHHHHhhCCCCCCCC----ceEEEecCCcHHHHHHHHHHHHhccccHHHhcc
Confidence            445565555667899999999999999999999874211    35567777777777877776   5789988766

The product of the rtcA gene is an RNA 3 -terminal phosphate cyclase []. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain IPR002078 from INTERPRO in the central region of the protein sequence.

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=82.52  E-value=3.3  Score=35.45  Aligned_cols=58  Identities=12%  Similarity=0.176  Sum_probs=45.0

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      .++++.+..-|.|-||-++.+++.++- .   .....+||++++  ++.++.++.+.+.+...+
T Consensus       222 ~~~~~g~~~~~~v~v~D~a~a~~~~l~-~---~~~~~~yni~~~--~~~s~~~~~~~i~~~~~~  279 (352)
T PRK10084        222 PIYGKGDQIRDWLYVEDHARALYKVVT-E---GKAGETYNIGGH--NEKKNLDVVLTICDLLDE  279 (352)
T ss_pred             EEeCCCCeEEeeEEHHHHHHHHHHHHh-c---CCCCceEEeCCC--CcCcHHHHHHHHHHHhcc
Confidence            456888899999999999999876653 1   123479999885  478999999988876543

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=80.54  E-value=6.6  Score=33.75  Aligned_cols=61  Identities=3%  Similarity=0.120  Sum_probs=44.3

Q ss_pred             eecCCcccccchHHHHHHHHHHHHHHhhhcC-CCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           15 FRDTETVFDMIPADMVVNAMIVAMVAHARQS-SYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        15 ~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~-~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      .++.+..-|+|-||-+|+|++.++-...... ....+||++|+...+.+..++.+.+.+...
T Consensus       216 ~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~  277 (349)
T TIGR02622       216 IRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWW  277 (349)
T ss_pred             ECCCCcccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhc
Confidence            4567888899999999999887664321111 112599999876678999999988777544

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=80.08  E-value=5.5  Score=34.16  Aligned_cols=63  Identities=10%  Similarity=0.138  Sum_probs=45.9

Q ss_pred             eeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcCC
Q 040322           14 AFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKS   78 (200)
Q Consensus        14 ~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P   78 (200)
                      +.++.+..-|+|-||-++.+++.++..... .....+||++++ .+++|+.++.+.+.+.....|
T Consensus       213 ~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~-~~~g~~yni~~~-~~~~s~~e~~~~i~~~~~~~~  275 (347)
T PRK11908        213 LVDGGSQKRAFTDIDDGIDALMKIIENKDG-VASGKIYNIGNP-KNNHSVRELANKMLELAAEYP  275 (347)
T ss_pred             EecCCceeeccccHHHHHHHHHHHHhCccc-cCCCCeEEeCCC-CCCcCHHHHHHHHHHHhcCcc
Confidence            445667788999999999998876643211 012469999763 467999999999988766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	95.74
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	93.66
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	92.32
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	92.19
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	91.75
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	91.06
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	90.94
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	90.71
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	89.97
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	89.93
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	89.07
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	88.9
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	88.76
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	88.66
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	88.39
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	88.05
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	87.67
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	87.42
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	87.12
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	86.92
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	86.88
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	86.81
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	85.2
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	85.13
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	85.08
4f6l_B	508	AUSA reductase domain protein; thioester reductase	84.82
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	84.73
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	83.4
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	83.2
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	82.72
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	82.7
4f6c_A	427	AUSA reductase domain protein; thioester reductase	82.47
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	82.31
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	82.31
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	81.71
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	81.69
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	81.46
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	81.23
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	80.5
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	80.46
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	80.05

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=95.74  E-value=0.014  Score=51.51  Aligned_cols=55  Identities=18%  Similarity=0.236  Sum_probs=44.1

Q ss_pred             CcccccchHHHHHHHHHHHHHHhhh-cCCCceEEEeecCCCCcccHHHHHHHHHHH
Q 040322           19 ETVFDMIPADMVVNAMIVAMVAHAR-QSSYVNIYRVGSSLRNPVTFMNVLDYSFDY   73 (200)
Q Consensus        19 ~~~~DiVPVD~VvNamI~aa~~~~~-~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~   73 (200)
                      +...|.||||.|+.+++.++..... ......+||++++..+|++|.++.+.+.++
T Consensus       323 ~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~  378 (478)
T 4dqv_A          323 RAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA  378 (478)
T ss_dssp             CCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred             cceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence            6788999999999999888764221 123457999999887889999999998875

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=93.66  E-value=0.0043  Score=52.43  Aligned_cols=132  Identities=12%  Similarity=0.087  Sum_probs=76.0

Q ss_pred             ecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcCCCCCCCCCceeeeeeEEe
Q 040322           16 RDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSWIDNTGKPVKVTKVIIF   95 (200)
Q Consensus        16 ~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~~~~~g~~~~~p~~~~~   95 (200)
                      .+++...+.|+||-|+++++.++.....  ....+||++++  .++||+++.+.+.+.......       +..|..   
T Consensus       162 ~~~~~~~~~i~v~Dva~~~~~~l~~~~~--~~~~~~~i~~~--~~~s~~e~~~~~~~~~g~~~~-------~~~~~~---  227 (369)
T 3st7_A          162 NDRNVELTLNYVDDIVAEIKRAIEGTPT--IENGVPTVPNV--FKVTLGEIVDLLYKFKQSRLD-------RTLPKL---  227 (369)
T ss_dssp             SCTTCEEEEEEHHHHHHHHHHHHHTCCC--EETTEECCSCC--EEEEHHHHHHHHHHHHHHHHH-------TCCCCT---
T ss_pred             cCCCeEEEEEEHHHHHHHHHHHHhCCcc--cCCceEEeCCC--CceeHHHHHHHHHHHhCCCcc-------cccCCC---
Confidence            4788889999999999999887753211  11479999875  789999999999887543211       111211   


Q ss_pred             cChhHHHHHHHHHhhchhhhhccccccchhhHhhhhh--hhhhhHHHHHHHHhhHHHHHHhccCcccceEEEeChhHH
Q 040322           96 SRMVGFHGYMKIQYLLPLKLSGFTCRDYNWQNTLCCQ--YFEGMLTGRRRKTNFVMPLVEIYGPHLLSNATFDDRNTE  171 (200)
Q Consensus        96 ~~~~~~~~~~~l~~~lPa~l~D~~~~~~~~~~~~~~~--~~~~~~~k~~rki~~~~~~~~~~~~Ft~~~w~F~~~N~~  171 (200)
                      .......+....+.++|..-++.       .+.....  |.-..+.+...+..   .......+++.+.|+|.+.|.+
T Consensus       228 ~~~~~~~l~~~~l~~~p~~~~~~-------~l~~~~D~rg~f~e~~~~~~~~q---~~ls~~~~g~~rg~h~h~~~~e  295 (369)
T 3st7_A          228 DNLFEKDLYSTYLSYLPSTDFSY-------PLLMNVDDRGSFTEFIKTPDRGQ---VSVNISKPGITKGNHWHHTKNE  295 (369)
T ss_dssp             TSHHHHHHHHHHHHTSCTTCSCC-------CCCEEEETTEEEEEEEECSSSCE---EEEEEECTTCEEEEEECSSCCE
T ss_pred             CCHHHHHHHHHHhcccCCcceee-------chhhccCCCcceeEEEecCCCce---EEEEEecCCceeccccccCcce
Confidence            12222234443455667655444       2100000  00011111111211   3456678999999999986544

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=92.32  E-value=0.17  Score=41.53  Aligned_cols=62  Identities=15%  Similarity=0.288  Sum_probs=47.8

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      ..+++.+...|.|.||-|+++++.++.. ... ....+||++++..+++++.++.+.+.+.+..
T Consensus       228 ~~~g~g~~~~~~i~v~Dva~a~~~~~~~-~~~-~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~  289 (347)
T 1orr_A          228 TISGNGKQVRDVLHAEDMISLYFTALAN-VSK-IRGNAFNIGGTIVNSLSLLELFKLLEDYCNI  289 (347)
T ss_dssp             EEESSSCCEEECEEHHHHHHHHHHHHHT-HHH-HTTCEEEESSCGGGEEEHHHHHHHHHHHHTC
T ss_pred             EEecCCcceEeeEEHHHHHHHHHHHHhc-ccc-CCCCEEEeCCCCCCCccHHHHHHHHHHHhCC
Confidence            3567888889999999999998877642 111 1235999998876789999999999887643

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=92.19  E-value=0.27  Score=40.62  Aligned_cols=62  Identities=26%  Similarity=0.307  Sum_probs=48.8

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcC
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKK   77 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~   77 (200)
                      ..++++++...|.|.||-|+.+++.++.....  ....+||++++  .++++.++.+.+.+.+...
T Consensus       233 ~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~--~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~  294 (351)
T 3ruf_A          233 VYINGDGETSRDFCYIDNVIQMNILSALAKDS--AKDNIYNVAVG--DRTTLNELSGYIYDELNLI  294 (351)
T ss_dssp             CEEESSSCCEECCEEHHHHHHHHHHHHTCCGG--GCSEEEEESCS--CCEEHHHHHHHHHHHHHTT
T ss_pred             cEEeCCCCeEEeeEEHHHHHHHHHHHHhhccc--cCCCEEEeCCC--CcccHHHHHHHHHHHhCcc
Confidence            35678889999999999999998877653111  23579999986  4899999999999887663

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=91.75  E-value=0.23  Score=39.93  Aligned_cols=60  Identities=10%  Similarity=0.056  Sum_probs=47.4

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      ..++++++...|+|.||-|+.+++.++....  .....+||++++  .++++.++.+.+.+.+.
T Consensus       204 ~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~--~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g  263 (319)
T 4b8w_A          204 LTVWGTGNPRRQFIYSLDLAQLFIWVLREYN--EVEPIILSVGEE--DEVSIKEAAEAVVEAMD  263 (319)
T ss_dssp             EEEESCSCCEECEEEHHHHHHHHHHHHHHCC--CSSCEEECCCGG--GCEEHHHHHHHHHHHTT
T ss_pred             eEEeCCCCeeEEEEeHHHHHHHHHHHHhccc--cCCceEEEecCC--CceeHHHHHHHHHHHhC
Confidence            3567888999999999999999887765321  123569999885  58999999999988764

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=91.06  E-value=0.48  Score=38.29  Aligned_cols=63  Identities=11%  Similarity=0.102  Sum_probs=45.0

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcC
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKK   77 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~   77 (200)
                      ...++++...|.|.||-|+++++.++-..........+||++++  .++++.++.+.+.+.+...
T Consensus       192 ~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~  254 (312)
T 3ko8_A          192 EVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNV--DAVRVLDIAQIVAEVLGLR  254 (312)
T ss_dssp             EEC----CEECEEEHHHHHHHHHHHHHHHHHSCCSEEEEEESCS--SCEEHHHHHHHHHHHHTCC
T ss_pred             EEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCCCcEEEEcCC--CceeHHHHHHHHHHHhCCC
Confidence            35678888899999999999988776542111234579999885  5899999999999876543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=90.94  E-value=0.3  Score=40.47  Aligned_cols=60  Identities=8%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             ecCCcccccchHHHHHHHHHHHHHHhhhc-CCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           16 RDTETVFDMIPADMVVNAMIVAMVAHARQ-SSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        16 ~d~~~~~DiVPVD~VvNamI~aa~~~~~~-~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      .+++...|.|.||-|+++++.++...... .....+||++++...++++.++.+.+.+.+.
T Consensus       224 ~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g  284 (357)
T 1rkx_A          224 RNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWG  284 (357)
T ss_dssp             SCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHC
T ss_pred             CCCCCeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhC
Confidence            35677889999999999988776532111 1224699998875678999999999988764

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=90.71  E-value=0.38  Score=39.06  Aligned_cols=58  Identities=17%  Similarity=0.248  Sum_probs=46.6

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      .+.++++...|.|.||-|+++++.++-    ......+||++++  .++++.++.+.+.+.+..
T Consensus       193 ~~~~~g~~~~~~i~v~Dva~a~~~~~~----~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~  250 (313)
T 3ehe_A          193 EILGNGEQNKSYIYISDCVDAMLFGLR----GDERVNIFNIGSE--DQIKVKRIAEIVCEELGL  250 (313)
T ss_dssp             EESTTSCCEECCEEHHHHHHHHHHHTT----CCSSEEEEECCCS--CCEEHHHHHHHHHHHTTC
T ss_pred             EEeCCCCeEEeEEEHHHHHHHHHHHhc----cCCCCceEEECCC--CCeeHHHHHHHHHHHhCC
Confidence            467888899999999999999887764    1234579999885  589999999999887644

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=89.97  E-value=0.5  Score=39.38  Aligned_cols=64  Identities=9%  Similarity=0.093  Sum_probs=48.8

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcC
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKK   77 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~   77 (200)
                      ..++++++...+.|.||-|+++++.++..... .....+||++++ ..++++.++.+.+.+.+...
T Consensus       233 ~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~~ni~~~-~~~~s~~e~~~~i~~~~g~~  296 (372)
T 3slg_A          233 ISLVDGGSQKRAFTYVDDGISALMKIIENSNG-VATGKIYNIGNP-NNNFSVRELANKMLELAAEF  296 (372)
T ss_dssp             EEEGGGGCCEEECEEHHHHHHHHHHHHHCGGG-TTTTEEEEECCT-TCEEEHHHHHHHHHHHHHHC
T ss_pred             cEEeCCCceEEEEEEHHHHHHHHHHHHhcccC-cCCCceEEeCCC-CCCccHHHHHHHHHHHhCCC
Confidence            34567788899999999999998877653221 123579999884 35899999999999887654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=89.93  E-value=0.7  Score=37.26  Aligned_cols=58  Identities=9%  Similarity=-0.016  Sum_probs=45.5

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      ...++++...+.|=||-|+++++.++...    ....+||++++  +|+|+.++.+.+.+...+
T Consensus       181 ~~~g~g~~~~~~ihv~Dva~a~~~~~~~~----~~~g~yn~~~~--~~~t~~e~~~~ia~~lgr  238 (298)
T 4b4o_A          181 GPIGSGHQFFPWIHIGDLAGILTHALEAN----HVHGVLNGVAP--SSATNAEFAQTFGAALGR  238 (298)
T ss_dssp             CCBTTSCSBCCEEEHHHHHHHHHHHHHCT----TCCEEEEESCS--CCCBHHHHHHHHHHHHTC
T ss_pred             ceecccCceeecCcHHHHHHHHHHHHhCC----CCCCeEEEECC--CccCHHHHHHHHHHHhCc
Confidence            34588899999999999999988766421    22359999884  799999999998887543

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=89.07  E-value=0.87  Score=37.23  Aligned_cols=57  Identities=18%  Similarity=0.107  Sum_probs=44.8

Q ss_pred             cCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           17 DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      +.+...|.|.||-|+++++.++...... ....+||++++  .++++.++.+.+.+....
T Consensus       230 ~g~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~  286 (341)
T 3enk_A          230 DGTGVRDYIHVVDLARGHIAALDALERR-DASLTVNLGTG--RGYSVLEVVRAFEKASGR  286 (341)
T ss_dssp             TSSCEECEEEHHHHHHHHHHHHHHHHHH-TSCEEEEESCS--CCEEHHHHHHHHHHHHCS
T ss_pred             CCCeeEeeEEHHHHHHHHHHHHHhhhcC-CcceEEEeCCC--CceeHHHHHHHHHHHhCC
Confidence            7788899999999999988777642111 23579999885  589999999999887543

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=88.90  E-value=0.79  Score=37.64  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=46.9

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      ..++++++...|.|.||-|+.+++.++...    ....+||++++  .++++.++.+.+.+.+..
T Consensus       228 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~----~~g~~~~i~~~--~~~s~~e~~~~i~~~~g~  286 (346)
T 4egb_A          228 LPLYGDGLNVRDWLHVTDHCSAIDVVLHKG----RVGEVYNIGGN--NEKTNVEVVEQIITLLGK  286 (346)
T ss_dssp             CEEETTSCCEECEEEHHHHHHHHHHHHHHC----CTTCEEEECCS--CCEEHHHHHHHHHHHHTC
T ss_pred             ceeeCCCCeEEeeEEHHHHHHHHHHHHhcC----CCCCEEEECCC--CceeHHHHHHHHHHHhCC
Confidence            345688889999999999999988776532    13469999985  579999999999887654

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=88.76  E-value=0.94  Score=37.93  Aligned_cols=57  Identities=16%  Similarity=0.184  Sum_probs=42.7

Q ss_pred             cCCcccccchHHHHHHHHHHHHHHhhhcC--CCc---eEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           17 DTETVFDMIPADMVVNAMIVAMVAHARQS--SYV---NIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~--~~~---~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      +.+...|+|.||-|+.+++.++.......  ...   .+||++++  .++++.++.+.+.+.+.
T Consensus       265 ~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g  326 (397)
T 1gy8_A          265 DGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTG  326 (397)
T ss_dssp             TSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHC
T ss_pred             CCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCC--CcccHHHHHHHHHHHhC
Confidence            56788899999999999887765321110  013   79999875  58999999999988754

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=88.66  E-value=0.64  Score=37.72  Aligned_cols=61  Identities=11%  Similarity=0.091  Sum_probs=45.6

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhc-----CCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQ-----SSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~-----~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      .++++.+...|.|.||-|+++++.++......     .....+||++++  .++++.++.+.+.+.+.
T Consensus       200 ~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g  265 (321)
T 1e6u_A          200 VVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTG--VDCTIRELAQTIAKVVG  265 (321)
T ss_dssp             EEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCS--CCEEHHHHHHHHHHHHT
T ss_pred             EEcCCCCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCC--CCccHHHHHHHHHHHhC
Confidence            35678888999999999999988776432110     001369999875  57999999999988754

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=88.39  E-value=0.57  Score=39.34  Aligned_cols=57  Identities=4%  Similarity=0.040  Sum_probs=43.4

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHH
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDY   73 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~   73 (200)
                      .++++.+...|.|.||-|+++++.++... .......+||+++   .++++.++.+.+.+.
T Consensus       264 ~~~g~g~~~~~~i~v~Dva~a~~~~l~~~-~~~g~~~~yni~~---~~~s~~e~~~~i~~~  320 (404)
T 1i24_A          264 TVYGKGGQTRGYLDIRDTVQCVEIAIANP-AKAGEFRVFNQFT---EQFSVNELASLVTKA  320 (404)
T ss_dssp             EEETTSCCEEEEEEHHHHHHHHHHHHHSC-CCTTCEEEEEECS---EEEEHHHHHHHHHHH
T ss_pred             EEeCCCCceECcEEHHHHHHHHHHHHhCc-ccCCCceEEEECC---CCCcHHHHHHHHHHH
Confidence            35678888999999999999988776421 1111126999976   479999999999886

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=88.05  E-value=0.65  Score=37.65  Aligned_cols=59  Identities=14%  Similarity=0.182  Sum_probs=46.7

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      ..++++++...+.|.||-|+.+++.++-.    .....+||++++  .++++.++.+.+.+.+..
T Consensus       187 ~~~~g~~~~~~~~v~v~Dva~a~~~~~~~----~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~  245 (311)
T 3m2p_A          187 LTLHANSVAKREFLYAKDAAKSVIYALKQ----EKVSGTFNIGSG--DALTNYEVANTINNAFGN  245 (311)
T ss_dssp             EEESSBCCCCEEEEEHHHHHHHHHHHTTC----TTCCEEEEECCS--CEECHHHHHHHHHHHTTC
T ss_pred             eEEecCCCeEEceEEHHHHHHHHHHHHhc----CCCCCeEEeCCC--CcccHHHHHHHHHHHhCC
Confidence            34557889999999999999998766532    114579999986  579999999999887654

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=87.67  E-value=1.1  Score=36.62  Aligned_cols=63  Identities=10%  Similarity=0.062  Sum_probs=46.5

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcC
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKK   77 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~   77 (200)
                      .++++.+...+.|.||-|+++++.++..... .....+||++++ .+++++.++.+.+.+.+...
T Consensus       211 ~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~-~~~g~~~~i~~~-~~~~s~~e~~~~i~~~~g~~  273 (345)
T 2bll_A          211 KLIDGGKQKRCFTDIRDGIEALYRIIENAGN-RCDGEIINIGNP-ENEASIEELGEMLLASFEKH  273 (345)
T ss_dssp             EEGGGSCCEEECEEHHHHHHHHHHHHHCGGG-TTTTEEEEECCT-TSEEEHHHHHHHHHHHHHTC
T ss_pred             EEECCCCEEEEEEEHHHHHHHHHHHHhhccc-cCCCceEEeCCC-CCCCCHHHHHHHHHHHhCCC
Confidence            3457777888999999999998877643211 113479999875 34899999999998876543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=87.42  E-value=0.95  Score=37.36  Aligned_cols=58  Identities=19%  Similarity=0.165  Sum_probs=45.5

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHh
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYF   74 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~   74 (200)
                      .++++++...+.|.||-|+++++.++.....  ....+||++++  .++++.++.+.+.+.+
T Consensus       236 ~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~--~~~~~~ni~~~--~~~s~~e~~~~i~~~~  293 (352)
T 1sb8_A          236 YINGDGETSRDFCYIENTVQANLLAATAGLD--ARNQVYNIAVG--GRTSLNQLFFALRDGL  293 (352)
T ss_dssp             EEESSSCCEECCEEHHHHHHHHHHHHTCCGG--GCSEEEEESCS--CCEEHHHHHHHHHHHH
T ss_pred             EEeCCCCceEeeEEHHHHHHHHHHHHhcccc--CCCceEEeCCC--CCccHHHHHHHHHHHH
Confidence            3567888889999999999998876643111  23479999886  5899999999998876

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=87.12  E-value=1.4  Score=36.04  Aligned_cols=58  Identities=12%  Similarity=0.154  Sum_probs=46.5

Q ss_pred             eeeecCCccccc----chHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           13 YAFRDTETVFDM----IPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        13 ~~~~d~~~~~Di----VPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      .++++.+...|.    |.||-|+.+++.++-...   ....+||++++  .++++.++.+.+.+.+.
T Consensus       231 ~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~---~~~~~~ni~~~--~~~s~~e~~~~i~~~~g  292 (347)
T 4id9_A          231 HILARNENGRPFRMHITDTRDMVAGILLALDHPE---AAGGTFNLGAD--EPADFAALLPKIAALTG  292 (347)
T ss_dssp             EEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGG---GTTEEEEESCS--SCEEHHHHHHHHHHHHC
T ss_pred             EEeCCCCcccCCccCcEeHHHHHHHHHHHhcCcc---cCCCeEEECCC--CcccHHHHHHHHHHHhC
Confidence            567788888899    999999999887765321   12469999886  58999999999988764

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=86.92  E-value=1.2  Score=37.14  Aligned_cols=56  Identities=13%  Similarity=0.119  Sum_probs=44.3

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      ...++.+...|.|.||-|+++++.++-.    . ...+||++++  .++++.++.+.+.+.+.
T Consensus       239 ~~~g~~~~~~~~i~v~Dva~a~~~~~~~----~-~~~~~ni~~~--~~~s~~e~~~~i~~~~g  294 (375)
T 1t2a_A          239 FSLGNLDAKRDWGHAKDYVEAMWLMLQN----D-EPEDFVIATG--EVHSVREFVEKSFLHIG  294 (375)
T ss_dssp             EEESCTTCEECCEEHHHHHHHHHHHHHS----S-SCCCEEECCS--CCEEHHHHHHHHHHHTT
T ss_pred             eEeCCCCceeeeEEHHHHHHHHHHHHhc----C-CCceEEEeCC--CcccHHHHHHHHHHHhC
Confidence            3567888899999999999998876532    1 2368999875  57999999999888654

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=86.88  E-value=1.5  Score=35.51  Aligned_cols=56  Identities=16%  Similarity=0.258  Sum_probs=42.8

Q ss_pred             cCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           17 DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      +.+...|.|.||-|+.+++.++..... .....+||++++  .++++.++.+.+.+.+.
T Consensus       217 ~g~~~~~~v~v~Dva~a~~~~~~~~~~-~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g  272 (330)
T 2c20_A          217 DGTCIRDYIHVEDLVAAHFLGLKDLQN-GGESDFYNLGNG--NGFSVKEIVDAVREVTN  272 (330)
T ss_dssp             SSSCEECEEEHHHHHHHHHHHHHHHHT-TCCCEEEECCCT--TCBCHHHHHHHHHHHTT
T ss_pred             CCceeEeeEeHHHHHHHHHHHHhcccc-CCCCCeEEeCCC--CCccHHHHHHHHHHHhC
Confidence            567788999999999998877653221 112479999875  58999999999988754

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=86.81  E-value=1  Score=36.76  Aligned_cols=55  Identities=16%  Similarity=0.145  Sum_probs=44.1

Q ss_pred             eeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           14 AFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        14 ~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      ..++++...|.|.||-|+++++.++-.    . ...+||++++  .++++.++.+.+.+.+.
T Consensus       222 ~~g~g~~~~~~i~v~Dva~a~~~~~~~----~-~~~~~ni~~~--~~~s~~e~~~~i~~~~g  276 (335)
T 1rpn_A          222 RLGNVDAKRDWGFAGDYVEAMWLMLQQ----D-KADDYVVATG--VTTTVRDMCQIAFEHVG  276 (335)
T ss_dssp             EESCTTCEEECEEHHHHHHHHHHHHHS----S-SCCCEEECCS--CEEEHHHHHHHHHHTTT
T ss_pred             EeCCCcceeceEEHHHHHHHHHHHHhc----C-CCCEEEEeCC--CCccHHHHHHHHHHHhC
Confidence            467888899999999999998877642    1 1369999875  58999999999988654

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=85.20  E-value=0.98  Score=37.41  Aligned_cols=55  Identities=5%  Similarity=0.029  Sum_probs=43.6

Q ss_pred             eeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           14 AFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        14 ~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      ..++++...|.|.||-|+++++.++..    . ...+||++++  .++++.++.+.+.+.+.
T Consensus       216 ~~g~~~~~~~~i~v~Dva~a~~~~~~~----~-~~~~~ni~~~--~~~s~~e~~~~i~~~~g  270 (372)
T 1db3_A          216 YLGNMDSLRDWGHAKDYVKMQWMMLQQ----E-QPEDFVIATG--VQYSVRQFVEMAAAQLG  270 (372)
T ss_dssp             EESCTTCEECCEEHHHHHHHHHHTTSS----S-SCCCEEECCC--CCEEHHHHHHHHHHTTT
T ss_pred             eecCCCceeeeeEHHHHHHHHHHHHhc----C-CCceEEEcCC--CceeHHHHHHHHHHHhC
Confidence            567888899999999999998766531    1 2368999885  57999999999988754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=85.13  E-value=2  Score=34.21  Aligned_cols=59  Identities=12%  Similarity=0.120  Sum_probs=45.7

Q ss_pred             eecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           15 FRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        15 ~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      .++++...|.|.||-|+.+++.++..... .....+||++++  .++++.++.+.+.+.+..
T Consensus       175 ~~~~~~~~~~i~v~Dva~~~~~~~~~~~~-~~~~~~~~~~~~--~~~s~~e~~~~i~~~~g~  233 (286)
T 3gpi_A          175 WPARNAWTNRIHRDDGAAFIAYLIQQRSH-AVPERLYIVTDN--QPLPVHDLLRWLADRQGI  233 (286)
T ss_dssp             SCSSBCEECEEEHHHHHHHHHHHHHHHTT-SCCCSEEEECCS--CCEEHHHHHHHHHHHTTC
T ss_pred             CCCcCceeEEEEHHHHHHHHHHHHhhhcc-CCCCceEEEeCC--CCCCHHHHHHHHHHHcCC
Confidence            46778888999999999998877754311 123579999875  589999999999887654

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=85.08  E-value=1.4  Score=36.15  Aligned_cols=57  Identities=9%  Similarity=0.106  Sum_probs=44.5

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      .++++.+...+.|.||-|+++++.++..     ....+||++++  .++++.++.+.+.+.+..
T Consensus       227 ~~~~~~~~~~~~v~v~Dva~a~~~~~~~-----~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~  283 (343)
T 2b69_A          227 TVYGSGSQTRAFQYVSDLVNGLVALMNS-----NVSSPVNLGNP--EEHTILEFAQLIKNLVGS  283 (343)
T ss_dssp             EEESSSCCEEECEEHHHHHHHHHHHHTS-----SCCSCEEESCC--CEEEHHHHHHHHHHHHTC
T ss_pred             eEcCCCCeEEeeEeHHHHHHHHHHHHhc-----CCCCeEEecCC--CCCcHHHHHHHHHHHhCC
Confidence            3567888889999999999998766531     12458999886  489999999999887643

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=84.82  E-value=0.42  Score=42.06  Aligned_cols=51  Identities=18%  Similarity=0.143  Sum_probs=40.5

Q ss_pred             cCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHH
Q 040322           17 DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDY   73 (200)
Q Consensus        17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~   73 (200)
                      +.+...++||||.|+.+++.++...    ....+||++++  ++++|.++.+.+.+.
T Consensus       373 ~g~~~~~~v~v~DvA~ai~~~~~~~----~~~~~~nl~~~--~~~s~~el~~~i~~~  423 (508)
T 4f6l_B          373 MAEMPVDFSFVDTTARQIVALAQVN----TPQIIYHVLSP--NKMPVKSLLECVKRK  423 (508)
T ss_dssp             GGGSEEECEEHHHHHHHHHHHTTBC----CSCSEEEESCS--CEEEHHHHHHHHHSS
T ss_pred             ccCceEEEEcHHHHHHHHHHHHhCC----CCCCEEEeCCC--CCCCHHHHHHHHHHc
Confidence            3477889999999999988776421    14579999885  689999999988764

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=84.73  E-value=3.1  Score=33.50  Aligned_cols=58  Identities=10%  Similarity=-0.090  Sum_probs=42.8

Q ss_pred             cCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           17 DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      ..+...+.+.||-|+++++.++...........+||++++  .++++.++.+.+.+.+..
T Consensus       188 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~e~~~~i~~~~g~  245 (315)
T 2ydy_A          188 DHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGN--EQMTKYEMACAIADAFNL  245 (315)
T ss_dssp             ECSSBBCCEEHHHHHHHHHHHHHHHHTCTTCCEEEECCCS--CCBCHHHHHHHHHHHTTC
T ss_pred             ccCceECcEEHHHHHHHHHHHHHhhccccCCCCeEEEcCC--CcccHHHHHHHHHHHhCC
Confidence            4466789999999999988776543111123479999885  479999999999887543

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=83.40  E-value=1.1  Score=35.97  Aligned_cols=55  Identities=18%  Similarity=0.310  Sum_probs=35.5

Q ss_pred             eeecCCc-ccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           14 AFRDTET-VFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        14 ~~~d~~~-~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      ++++++. ..+.|.||-|+.+++.++...    . ..+||++++  .++++.++.+.+.+.+.
T Consensus       200 ~~~~g~~~~~~~i~v~Dva~~~~~~~~~~----~-~~~~~i~~~--~~~s~~e~~~~i~~~~g  255 (310)
T 1eq2_A          200 LFEGSENFKRDFVYVGDVADVNLWFLENG----V-SGIFNLGTG--RAESFQAVADATLAYHK  255 (310)
T ss_dssp             --------CBCEEEHHHHHHHHHHHHHHC----C-CEEEEESCS--CCBCHHHHHHHC-----
T ss_pred             EecCCCcceEccEEHHHHHHHHHHHHhcC----C-CCeEEEeCC--CccCHHHHHHHHHHHcC
Confidence            4567777 889999999999988776432    1 569999885  57999999998877643

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=83.20  E-value=1.4  Score=36.60  Aligned_cols=56  Identities=21%  Similarity=0.262  Sum_probs=44.3

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      ..+++++...|.|.||-|+.+++.++-.    .... +||++++  .+++|.++.+.+.+.+.
T Consensus       218 ~~~~~g~~~~~~i~v~Dva~ai~~~~~~----~~~g-~~~i~~~--~~~s~~e~~~~i~~~~g  273 (362)
T 3sxp_A          218 KLFEFGEQLRDFVYIEDVIQANVKAMKA----QKSG-VYNVGYS--QARSYNEIVSILKEHLG  273 (362)
T ss_dssp             ECSGGGCCEEECEEHHHHHHHHHHHTTC----SSCE-EEEESCS--CEEEHHHHHHHHHHHHC
T ss_pred             EEECCCCeEEccEEHHHHHHHHHHHHhc----CCCC-EEEeCCC--CCccHHHHHHHHHHHcC
Confidence            3457778889999999999998876532    1223 9999886  47999999999998765

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=82.72  E-value=3.1  Score=33.97  Aligned_cols=56  Identities=16%  Similarity=0.146  Sum_probs=42.4

Q ss_pred             cCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           17 DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      +.+...|+|.||-|+.+++.++..... .....+||++++  .++++.++.+.+.+.+.
T Consensus       234 ~g~~~~~~i~v~Dva~a~~~~~~~~~~-~~g~~~~ni~~~--~~~s~~e~~~~i~~~~g  289 (348)
T 1ek6_A          234 DGTGVRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTG--TGYSVLQMVQAMEKASG  289 (348)
T ss_dssp             SSSCEECEEEHHHHHHHHHHHHHHHTT-TCCEEEEEECCS--CCEEHHHHHHHHHHHHC
T ss_pred             CCceEEeeEEHHHHHHHHHHHHhcccc-cCCceEEEeCCC--CCccHHHHHHHHHHHhC
Confidence            556778999999999998877653211 112369999875  57999999999988754

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=82.70  E-value=1.4  Score=36.86  Aligned_cols=56  Identities=13%  Similarity=0.081  Sum_probs=43.7

Q ss_pred             eeecCCcccccchHHHHHHH-HHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           14 AFRDTETVFDMIPADMVVNA-MIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        14 ~~~d~~~~~DiVPVD~VvNa-mI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      ++++++...+.|.||-|+++ ++.++.. .   ... +||++++  .++++.++.+.+.+.+..
T Consensus       250 ~~g~g~~~~~~i~v~Dva~a~i~~~~~~-~---~~g-~~~i~~~--~~~s~~e~~~~i~~~~g~  306 (377)
T 2q1s_A          250 LENGGVATRDFIFVEDVANGLIACAADG-T---PGG-VYNIASG--KETSIADLATKINEITGN  306 (377)
T ss_dssp             CSGGGCCEECCEEHHHHHHHHHHHHHHC-C---TTE-EEECCCC--CCEEHHHHHHHHHHHHTC
T ss_pred             EeCCCCeEEeeEEHHHHHHHHHHHHHhc-C---CCC-eEEecCC--CceeHHHHHHHHHHHhCC
Confidence            46777888999999999999 6655532 1   123 9999885  589999999999887653

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=82.47  E-value=0.62  Score=39.82  Aligned_cols=50  Identities=18%  Similarity=0.159  Sum_probs=39.9

Q ss_pred             cCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHH
Q 040322           17 DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFD   72 (200)
Q Consensus        17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~   72 (200)
                      +++...++++||.|+.+++.++...    ....+||++++  .|++|.++.+.+.+
T Consensus       292 ~~~~~~~~v~v~DvA~ai~~~~~~~----~~g~~~~l~~~--~~~s~~el~~~i~~  341 (427)
T 4f6c_A          292 MAEMPVDFSFVDTTARQIVALAQVN----TPQIIYHVLSP--NKMPVKSLLECVKR  341 (427)
T ss_dssp             HHTCEECCEEHHHHHHHHHHHTTSC----CCCSEEEESCS--CCEEHHHHHHHHHS
T ss_pred             cccceEEEeeHHHHHHHHHHHHcCC----CCCCEEEecCC--CCCcHHHHHHHHHH
Confidence            3577889999999999988776421    14579999885  58999999998876

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=82.31  E-value=1.7  Score=35.69  Aligned_cols=58  Identities=14%  Similarity=0.098  Sum_probs=42.8

Q ss_pred             eeecC---CcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           14 AFRDT---ETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        14 ~~~d~---~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      +++++   ....+++.||-|+.+++.++... .  ....+||++++  .++++.++.+.+.+.+..
T Consensus       212 ~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~-~--~~g~~~ni~~~--~~~s~~e~~~~i~~~~g~  272 (364)
T 2v6g_A          212 FTGCKAAWDGYSDCSDADLIAEHHIWAAVDP-Y--AKNEAFNVSNG--DVFKWKHFWKVLAEQFGV  272 (364)
T ss_dssp             CCSCHHHHHSCBCCEEHHHHHHHHHHHHHCG-G--GTTEEEEECCS--CCBCHHHHHHHHHHHHTC
T ss_pred             cCCCcccccccCCCCcHHHHHHHHHHHHhCC-C--CCCceEEecCC--CcCCHHHHHHHHHHHhCC
Confidence            35555   35588999999999988776422 1  12469999885  479999999999887643

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=82.31  E-value=1.9  Score=35.54  Aligned_cols=56  Identities=20%  Similarity=0.323  Sum_probs=43.8

Q ss_pred             eeecCCc-ccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           14 AFRDTET-VFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        14 ~~~d~~~-~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      ++++.+. ..+.|.||-|+++++.++...    . ..+||++++  .++++.++.+.+.+.+..
T Consensus       247 ~~~~~~~~~~~~i~v~Dva~ai~~~~~~~----~-~~~~~i~~~--~~~s~~e~~~~i~~~~g~  303 (357)
T 2x6t_A          247 LFEGSENFKRDFVYVGDVADVNLWFLENG----V-SGIFNLGTG--RAESFQAVADATLAYHKK  303 (357)
T ss_dssp             EETTGGGCEECEEEHHHHHHHHHHHHHHC----C-CEEEEESCS--CCEEHHHHHHHHHHHHTC
T ss_pred             EeCCCCcceEccEEHHHHHHHHHHHHhcC----C-CCeEEecCC--CcccHHHHHHHHHHHcCC
Confidence            4566666 789999999999988776432    1 469999885  579999999999887543

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=81.71  E-value=2  Score=35.97  Aligned_cols=56  Identities=11%  Similarity=0.144  Sum_probs=44.4

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      .++++.+...+.|.||-|+++++.++...     ...+||++++  .++++.++.+.+.+.+.
T Consensus       236 ~~~g~g~~~~~~i~v~Dva~ai~~~l~~~-----~~~~~ni~~~--~~~s~~e~~~~i~~~~g  291 (379)
T 2c5a_A          236 EMWGDGLQTRSFTFIDECVEGVLRLTKSD-----FREPVNIGSD--EMVSMNEMAEMVLSFEE  291 (379)
T ss_dssp             EEESCSCCEECCEEHHHHHHHHHHHHHSS-----CCSCEEECCC--CCEEHHHHHHHHHHTTT
T ss_pred             EEeCCCCeeEEEEEHHHHHHHHHHHhhcc-----CCCeEEeCCC--CccCHHHHHHHHHHHhC
Confidence            35678888899999999999988776421     2458999885  58999999999888654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=81.69  E-value=1.8  Score=35.58  Aligned_cols=60  Identities=5%  Similarity=-0.031  Sum_probs=46.3

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      ..++++++...+.|.+|-|+.+++.++... .  ....+||++ +..+++|+.++.+.+.+...
T Consensus       183 ~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~-~--~~~~~~~i~-g~~~~~s~~e~~~~~~~~~g  242 (346)
T 3i6i_A          183 FQIYGDGNVKAYFVAGTDIGKFTMKTVDDV-R--TLNKSVHFR-PSCNCLNINELASVWEKKIG  242 (346)
T ss_dssp             EEEETTSCCCEEEECHHHHHHHHHHHTTCG-G--GTTEEEECC-CGGGEECHHHHHHHHHHHHT
T ss_pred             EEEccCCCceEEecCHHHHHHHHHHHHhCc-c--ccCeEEEEe-CCCCCCCHHHHHHHHHHHHC
Confidence            567889999999999999999988766432 1  124678876 33478999999999988754

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=81.46  E-value=2.5  Score=34.52  Aligned_cols=58  Identities=12%  Similarity=0.176  Sum_probs=44.9

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      .++++++...+.|.||-|+++++.++-..    ....+||++++  .++++.++.+.+.+.+..
T Consensus       216 ~~~~~~~~~~~~i~v~Dva~~~~~~~~~~----~~g~~~~i~~~--~~~s~~e~~~~i~~~~g~  273 (348)
T 1oc2_A          216 KLYGEGKNVRDWIHTNDHSTGVWAILTKG----RMGETYLIGAD--GEKNNKEVLELILEKMGQ  273 (348)
T ss_dssp             EEETTSCCEEECEEHHHHHHHHHHHHHHC----CTTCEEEECCS--CEEEHHHHHHHHHHHTTC
T ss_pred             eEecCCCceEeeEEHHHHHHHHHHHhhCC----CCCCeEEeCCC--CCCCHHHHHHHHHHHhCC
Confidence            34577778889999999999988776421    23469999875  589999999999887643

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=81.23  E-value=2.3  Score=34.65  Aligned_cols=58  Identities=14%  Similarity=0.189  Sum_probs=44.6

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      .++++.+...+.|.||-|+.+++.++-..    ....+||++++  .++++.++.+.+.+.+..
T Consensus       206 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~----~~g~~~~v~~~--~~~s~~e~~~~i~~~~g~  263 (337)
T 1r6d_A          206 PLYGDGANVREWVHTDDHCRGIALVLAGG----RAGEIYHIGGG--LELTNRELTGILLDSLGA  263 (337)
T ss_dssp             EEETTSCCEEEEEEHHHHHHHHHHHHHHC----CTTCEEEECCC--CEEEHHHHHHHHHHHHTC
T ss_pred             EEeCCCCeeEeeEeHHHHHHHHHHHHhCC----CCCCEEEeCCC--CCccHHHHHHHHHHHhCC
Confidence            34577778889999999999987766421    12469999875  589999999998887543

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=80.50  E-value=1.3  Score=35.62  Aligned_cols=58  Identities=19%  Similarity=0.177  Sum_probs=42.0

Q ss_pred             eeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHh
Q 040322           14 AFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYF   74 (200)
Q Consensus        14 ~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~   74 (200)
                      .+++++...|.|.||-|+.+++.++...........+||+++   .++++.++.+.+.+.+
T Consensus       203 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~---~~~s~~e~~~~i~~~~  260 (312)
T 2yy7_A          203 CFLSSETKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAA---MSFTPTEIANEIKKHI  260 (312)
T ss_dssp             ESSCTTCCEEEEEHHHHHHHHHHHHHSCGGGCCCSSCEECCS---EEECHHHHHHHHHTTC
T ss_pred             EecCCCceeeeeeHHHHHHHHHHHHhCcccccccCceEEeCC---CccCHHHHHHHHHHHC
Confidence            456778889999999999998877642211100126999974   4799999999887654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=80.46  E-value=4.8  Score=31.79  Aligned_cols=54  Identities=19%  Similarity=0.297  Sum_probs=41.8

Q ss_pred             cCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           17 DTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        17 d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      .++...+.|.||-|+++++.++-..    ....+||++++  .++++.++.+.+.+.+..
T Consensus       175 ~~~~~~~~i~v~Dva~a~~~~~~~~----~~g~~~~i~~~--~~~s~~e~~~~i~~~~g~  228 (286)
T 3ius_A          175 KPGQVFSRIHVEDIAQVLAASMARP----DPGAVYNVCDD--EPVPPQDVIAYAAELQGL  228 (286)
T ss_dssp             CTTCCBCEEEHHHHHHHHHHHHHSC----CTTCEEEECCS--CCBCHHHHHHHHHHHHTC
T ss_pred             CCCcccceEEHHHHHHHHHHHHhCC----CCCCEEEEeCC--CCccHHHHHHHHHHHcCC
Confidence            3367789999999999988766422    13469999985  579999999999887654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=80.05  E-value=2.7  Score=33.68  Aligned_cols=54  Identities=15%  Similarity=0.050  Sum_probs=42.6

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHh
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYF   74 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~   74 (200)
                      .++++++...+.|.||-|+++++.++-..    ... +||++++  .++++.++.+.+. ..
T Consensus       199 ~~~~~~~~~~~~v~v~Dva~~~~~~~~~~----~~g-~~~i~~~--~~~s~~e~~~~i~-~~  252 (321)
T 3vps_A          199 PVEGDGEQRRDFTYITDVVDKLVALANRP----LPS-VVNFGSG--QSLSVNDVIRILQ-AT  252 (321)
T ss_dssp             EEETTSCCEECEEEHHHHHHHHHHGGGSC----CCS-EEEESCS--CCEEHHHHHHHHH-TT
T ss_pred             EEeCCCCceEceEEHHHHHHHHHHHHhcC----CCC-eEEecCC--CcccHHHHHHHHH-Hh
Confidence            45678889999999999999987665321    123 9999886  5799999999888 54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	89.95
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.19
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.26
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	82.75
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	81.65
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	80.9

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=89.95  E-value=0.32  Score=38.01  Aligned_cols=65  Identities=9%  Similarity=0.058  Sum_probs=49.3

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcCC
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKS   78 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P   78 (200)
                      ..++++++..-|.|-||-+|.+++.++-.... .....+||++++ .+++|+.++.+.+.+...+.+
T Consensus       210 ~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~-~~~g~~~Nig~~-~~~~t~~~l~~~i~~~~~~~~  274 (342)
T d2blla1         210 IKLIDGGKQKRCFTDIRDGIEALYRIIENAGN-RCDGEIINIGNP-ENEASIEELGEMLLASFEKHP  274 (342)
T ss_dssp             EEEGGGSCCEEECEEHHHHHHHHHHHHHCGGG-TTTTEEEEECCT-TSEEEHHHHHHHHHHHHHTCT
T ss_pred             ccccCCCCeeeeecccccccceeeeehhhccc-cCCCeEEEEecc-cchhHHHHHHHHHHHHhCCCc
Confidence            45678889999999999999998877653222 233579999864 578999999998887765443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=85.19  E-value=0.62  Score=37.04  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=42.3

Q ss_pred             cCCcccccchHHHHHHHHHHHHHHhhhc-----CCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           17 DTETVFDMIPADMVVNAMIVAMVAHARQ-----SSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        17 d~~~~~DiVPVD~VvNamI~aa~~~~~~-----~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      |.+.+=|+|.|+-|+.+++.++-.....     .....|||++|+  +++++.++.+.+.+...
T Consensus       265 dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~--~~~s~~el~~~i~~~~~  326 (383)
T d1gy8a_         265 DGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTG  326 (383)
T ss_dssp             TSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHC
T ss_pred             CCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCC--CceeHHHHHHHHHHHhC
Confidence            3445558999999999988776543221     123579999887  58999999999988754

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.26  E-value=0.58  Score=37.29  Aligned_cols=64  Identities=9%  Similarity=0.050  Sum_probs=45.3

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhcCCC
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTKKSW   79 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~~P~   79 (200)
                      ..++||++.+-|.+.||-|++|++.++....    ....|++..+..++.++.++.+.+.+...+.+.
T Consensus       253 ~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~----~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~  316 (393)
T d1i24a_         253 LTVYGKGGQTRGYLDIRDTVQCVEIAIANPA----KAGEFRVFNQFTEQFSVNELASLVTKAGSKLGL  316 (393)
T ss_dssp             EEEETTSCCEEEEEEHHHHHHHHHHHHHSCC----CTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTC
T ss_pred             eEEeeecccccccccccchHHHHHHHHHhhc----ccceeeeecCCCCeeEHHHHHHHHHHHHHhhCC
Confidence            3557899999999999999999987765221    122344433334678999999998887655443

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=82.75  E-value=0.82  Score=35.00  Aligned_cols=63  Identities=14%  Similarity=0.312  Sum_probs=50.0

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhhc
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFTK   76 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~~   76 (200)
                      ..+++|++..-|.+-||-++++++.++.....  ....+||+..+..+++++.++.+.+.+....
T Consensus       226 ~~~~g~g~~~r~~~~v~D~~~~~~~~l~~~~~--~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~  288 (338)
T d1orra_         226 FTISGNGKQVRDVLHAEDMISLYFTALANVSK--IRGNAFNIGGTIVNSLSLLELFKLLEDYCNI  288 (338)
T ss_dssp             EEEESSSCCEEECEEHHHHHHHHHHHHHTHHH--HTTCEEEESSCGGGEEEHHHHHHHHHHHHTC
T ss_pred             eEEeCCCceeEeeecccchhhHHHHHHhcccc--ccCccccccccccccccHHHHHHHHHHHHCC
Confidence            45678889999999999999999877653322  1246999988888999999999998887543

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=81.65  E-value=1.2  Score=34.38  Aligned_cols=57  Identities=14%  Similarity=0.195  Sum_probs=45.9

Q ss_pred             eeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           13 YAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        13 ~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      .++++++..-|.|-||=|+++++.++-..    ....+||++++  +++++.++.+.+.+.+.
T Consensus       206 ~v~~~g~~~r~~i~v~D~a~ai~~~~~~~----~~~~~~ni~~~--~~~s~~e~~~~i~~~~~  262 (322)
T d1r6da_         206 PLYGDGANVREWVHTDDHCRGIALVLAGG----RAGEIYHIGGG--LELTNRELTGILLDSLG  262 (322)
T ss_dssp             EEETTSCCEEEEEEHHHHHHHHHHHHHHC----CTTCEEEECCC--CEEEHHHHHHHHHHHHT
T ss_pred             EEecCCCeEEccEEHHHHHHHHHHHHhCC----CCCCeeEEeec--ccchhHHHHHHHHHHhC
Confidence            45688888999999999999998776421    23469999885  78999999998887754

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=80.90  E-value=0.98  Score=35.61  Aligned_cols=57  Identities=7%  Similarity=0.065  Sum_probs=45.4

Q ss_pred             eeeeecCCcccccchHHHHHHHHHHHHHHhhhcCCCceEEEeecCCCCcccHHHHHHHHHHHhh
Q 040322           12 YYAFRDTETVFDMIPADMVVNAMIVAMVAHARQSSYVNIYRVGSSLRNPVTFMNVLDYSFDYFT   75 (200)
Q Consensus        12 ~~~~~d~~~~~DiVPVD~VvNamI~aa~~~~~~~~~~~VYn~~Ss~~NP~t~~~~~~~~~~~~~   75 (200)
                      ....++++..-|++-||=|+++++.++-    . ....+||++|+.  +.|+.++.+...+...
T Consensus       214 ~~~~g~~~~~r~~~~v~D~~~a~~~~~~----~-~~~~~yni~sg~--~~s~~~~~~~~~~~~g  270 (357)
T d1db3a_         214 CLYLGNMDSLRDWGHAKDYVKMQWMMLQ----Q-EQPEDFVIATGV--QYSVRQFVEMAAAQLG  270 (357)
T ss_dssp             CEEESCTTCEECCEEHHHHHHHHHHTTS----S-SSCCCEEECCCC--CEEHHHHHHHHHHTTT
T ss_pred             eEEECCCCeeecceeechHHHHHHHHHh----C-CCCCeEEECCCC--ceehHHHHHHHHHHhC
Confidence            3456889999999999999999886642    1 234689999974  7899999999888754