Citrus Sinensis ID: 040323

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
LSRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKISTH
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHEEEHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
LSRLKTILSQKQFLKIFALSAIFCFSVVcgntslryAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKISTH
Flexible Loop (DISEMBL)
lsrlktilSQKQFLKIFALSAIFCFSVVCGNTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYskvkkrfkisth
Low Complexity Region (SEG)
LSRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQvlgnakaalaavvlvMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKISTH
Disordered region (IsUnstruct)
******ILSQKQFLKIFALSAIFCFSVVCGNTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF*****
Disordered Region (DISOPRED)
********SQKQFLKIFALSAIFCFSVVCGNTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK*R******
Disordered Region (DISEMBL)
LSRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKISTH
Disordered Region (DISPRO)
LSRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKISTH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q9LDH3	361	Probable sugar phosphate/	yes	no	0.969	0.612	0.614	6e-75
Q6DBP3	309	Probable sugar phosphate/	no	no	0.969	0.715	0.518	1e-55
Q5XF09	308	Probable sugar phosphate/	no	no	0.969	0.717	0.510	3e-55
Q9FYE5	309	Probable sugar phosphate/	no	no	0.969	0.715	0.468	2e-52
Q9SS40	355	Probable sugar phosphate/	no	no	0.969	0.622	0.452	4e-51
Q9C521	336	UDP-galactose transporter	no	no	0.947	0.642	0.274	5e-14
Q9SFE9	341	GDP-mannose transporter G	no	no	0.947	0.633	0.282	2e-13
Q9LFN3	351	Probable sugar phosphate/	no	no	0.644	0.418	0.265	9e-05
Q3E6T0	349	Probable sugar phosphate/	no	no	0.723	0.472	0.261	0.0001
Q6PGC7	313	Solute carrier family 35	yes	no	0.644	0.469	0.264	0.0007

>sp|Q9LDH3|PT112_ARATH Probable sugar phosphate/phosphate translocator At1g12500 OS=Arabidopsis thaliana GN=At1g12500 PE=2 SV=1

 Score =  280 bits (716), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 148/241 (61%), Positives = 178/241 (73%), Gaps = 20/241 (8%)

Query: 5   KTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKK 57
           + ILS++QFLKI +LSAIFC SVVCGNTSLRY       A+GA T FF A+ +FL+TCK 
Sbjct: 117 QHILSRRQFLKILSLSAIFCLSVVCGNTSLRYIPVSFNQAIGATTPFFTAVFSFLITCKT 176

Query: 58  EFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKIN 117
           E  EVY AL+PVV  IVLASN+EP F+L GFL+C+ ST  RA K  +Q I+LTS++EK++
Sbjct: 177 ESTEVYLALLPVVSGIVLASNSEPSFHLFGFLICVASTAGRALKSVVQGIILTSESEKLH 236

Query: 118 FMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVNLTKF 164
            MNLL+YMAPMAA I LPFTLYIEG               I++LL GNAT+AYLVNLT F
Sbjct: 237 SMNLLLYMAPMAACILLPFTLYIEGNVLRVLIEKARTDPLIIFLLAGNATVAYLVNLTNF 296

Query: 165 LVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFK 224
           LV KHT  LTLQVLGN KAA+AA V V+IF+NPVTVMG+  F VT M  VLYS+ +KR K
Sbjct: 297 LVTKHTSALTLQVLGNGKAAVAAGVSVLIFRNPVTVMGIAGFGVTIMGVVLYSEARKRSK 356

Query: 225 I 225
           +
Sbjct: 357 L 357

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP3|PT505_ARATH Probable sugar phosphate/phosphate translocator At5g05820 OS=Arabidopsis thaliana GN=At5g05820 PE=2 SV=1

 Score =  216 bits (550), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/241 (51%), Positives = 160/241 (66%), Gaps = 20/241 (8%)

Query: 4   LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
           ++TI S+ QF KI ALS +FC SVV GN SLR+       A+GA T FF A+  +L+T K
Sbjct: 68  MQTIRSRVQFFKIAALSLVFCVSVVFGNISLRFLPVSFNQAIGATTPFFTAVFAYLMTRK 127

Query: 57  KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
           KE    Y+ L+PVV  +V+AS  EP F+L GFL+CI +T  RA K  +Q ILL+S+ EK+
Sbjct: 128 KEAWLTYFTLVPVVTGVVIASGGEPSFHLFGFLMCIAATAARALKSVLQGILLSSEGEKL 187

Query: 117 NFMNLLVYMAPMAASIFLPFTLYIE----GIF---------IVYLLLGNATIAYLVNLTK 163
           N MNLL+YMAP+A  + LP TL +E    GI          IV+ LL N+ +AYLVNLT 
Sbjct: 188 NSMNLLLYMAPIAVVLLLPATLIMEKNVVGITIALARDDFRIVWYLLFNSALAYLVNLTN 247

Query: 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
           FLV  HT  LTLQVLGNAK A+A VV ++IFKNPV+V GM  + +T    +LYS+ KKR 
Sbjct: 248 FLVTNHTSALTLQVLGNAKGAVAVVVSILIFKNPVSVTGMLGYSLTVCGVILYSEAKKRN 307

Query: 224 K 224
           K
Sbjct: 308 K 308

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XF09|PT311_ARATH Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 123/241 (51%), Positives = 161/241 (66%), Gaps = 20/241 (8%)

Query: 4   LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
           ++TI S+ QFLKI ALS +FC SVV GN SLR+       A+GA T FF A+  +L+T K
Sbjct: 68  MQTIRSRVQFLKIAALSLVFCVSVVFGNISLRFLPVSFNQAIGATTPFFTAVFAYLITFK 127

Query: 57  KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
           +E    Y+ L+PVV  +V+AS +EP F+L GF++CI +T  RA K  +Q ILL+S+ EK+
Sbjct: 128 REAWLTYFTLVPVVTGVVIASGSEPSFHLFGFIMCIAATAARALKSVLQGILLSSEGEKL 187

Query: 117 NFMNLLVYMAPMAASIFLPFTLYIE----GIF---------IVYLLLGNATIAYLVNLTK 163
           N MNLL+YMAP+A    LP TL +E    GI          IV+ LL N+ +AY VNLT 
Sbjct: 188 NSMNLLLYMAPIAVVFLLPATLIMEKNVVGITIALARDDFRIVWYLLFNSALAYFVNLTN 247

Query: 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
           FLV KHT  LTLQVLGNAK A+A VV ++IF+NPV+V GM  + +T    +LYS+ KKR 
Sbjct: 248 FLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMLGYSLTVCGVILYSEAKKRS 307

Query: 224 K 224
           K
Sbjct: 308 K 308

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYE5|PT504_ARATH Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/241 (46%), Positives = 155/241 (64%), Gaps = 20/241 (8%)

Query: 4   LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
           L+ + S+ QFLK+  LS +FC SVV GN SLRY       AVGA T FF A+  +L+T K
Sbjct: 69  LQHLKSRSQFLKVATLSIVFCASVVGGNISLRYLPVSFNQAVGATTPFFTALFAYLMTFK 128

Query: 57  KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
           +E    Y AL+PVV  +V+AS  EP F+  GF++CI +T  RA K  +Q ILL+S+ EK+
Sbjct: 129 REAWVTYGALVPVVAGVVIASGGEPGFHWFGFIMCISATAARAFKSVLQGILLSSEGEKL 188

Query: 117 NFMNLLVYMAPMAASIFLPFTLYIEGI-------------FIVYLLLGNATIAYLVNLTK 163
           N MNL++YM+P+A    LP TL++E               ++  LLL N+ +AY  NL  
Sbjct: 189 NSMNLMLYMSPIAVIALLPVTLFMEPDVISVTLTLAKQHQYMWILLLVNSVMAYSANLLN 248

Query: 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
           FLV KHT  LTLQVLGNAK A+A V+ ++IF+NPVTVMG+  + +T +  V Y + K+RF
Sbjct: 249 FLVTKHTSALTLQVLGNAKGAVAVVISILIFQNPVTVMGIGGYSITVLGVVAYGETKRRF 308

Query: 224 K 224
           +
Sbjct: 309 R 309

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS40|PT310_ARATH Probable sugar phosphate/phosphate translocator At3g10290 OS=Arabidopsis thaliana GN=At3g10290 PE=3 SV=1

 Score =  201 bits (510), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 155/241 (64%), Gaps = 20/241 (8%)

Query: 4   LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
           L+ + S+ QFLK+  LS +FC SVV GN SLRY       AVGA T FF A+  +++T K
Sbjct: 115 LQYLKSRSQFLKVATLSIVFCASVVGGNISLRYLPVSFNQAVGATTPFFTALFAYIMTFK 174

Query: 57  KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
           +E    Y AL+PVV  +V+AS  EP F+  GF++CI +T  RA K  +Q ILL+S+ E++
Sbjct: 175 REAWVTYGALVPVVTGVVIASGGEPGFHWFGFIMCISATAARAFKSVLQGILLSSEGERL 234

Query: 117 NFMNLLVYMAPMAASIFLPFTLYIEGI-------------FIVYLLLGNATIAYLVNLTK 163
           N MNL++YM+P+A    LP T+++E               ++  LLL N+ +AY  NL  
Sbjct: 235 NSMNLMLYMSPIAVIALLPVTIFMEPDVMSVTLTLGRQHKYMYILLLVNSVMAYSANLLN 294

Query: 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
           FLV KHT  LTLQVLGNAK A+A V+ +++F+NPVTVMG+  + +T +  V Y + K+RF
Sbjct: 295 FLVTKHTSALTLQVLGNAKGAVAVVISILLFRNPVTVMGIGGYSITVLGVVAYGETKRRF 354

Query: 224 K 224
           +
Sbjct: 355 R 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C521|UGAL1_ARATH UDP-galactose transporter 1 OS=Arabidopsis thaliana GN=UDP-GALT1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 28/244 (11%)

Query: 1   LSRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRYAVGAATLFFNAISTF--------- 51
           L  L  +  + ++ +IF +S +FC ++V GN SLRY       F   I +F         
Sbjct: 63  LKPLIVVDPEDRWRRIFPMSFVFCINIVLGNVSLRYI---PVSFMQTIKSFTPATTVVLQ 119

Query: 52  LLTCKKEFA-EVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLT 110
            L  +K F   ++ +L+P+V  I+L S  E  F + GF   +      ++K  + + LL 
Sbjct: 120 WLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLL- 178

Query: 111 SKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVY-------------LLLGNATIAY 157
               K + +N + YMAP A  I     L +EG  I+              ++L +  +A+
Sbjct: 179 -HGYKFDSINTVYYMAPFATMILGIPALLLEGSGILSWFEAHPAPWSALIIILSSGVLAF 237

Query: 158 LVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217
            +N + F V   T  +T  V GN K A+A +V  +IF+NP++ M      +T +    Y 
Sbjct: 238 CLNFSIFYVIHSTTAVTFNVAGNLKVAVAVMVSWLIFRNPISYMNAVGCGITLVGCTFYG 297

Query: 218 KVKK 221
            V+ 
Sbjct: 298 YVRH 301

UDP-galactose transporter that transports UDP-galactose, UDP-glucose and GDP-fucose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFE9|GONS5_ARATH GDP-mannose transporter GONST5 OS=Arabidopsis thaliana GN=GONST5 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 28/244 (11%)

Query: 1   LSRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRYAVGAATLFFNAISTF--------- 51
           L  L  +  + ++ +IF +S +FC ++V GN SLRY       F   I +          
Sbjct: 69  LKPLIVVDPEDRWRRIFPMSFVFCINIVLGNISLRYI---PVSFMQTIKSLTPATTVVLQ 125

Query: 52  LLTCKKEFA-EVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLT 110
            L  +K F   ++ +L+P+V  I+L S  E  F + GF   +      ++K  + + LL 
Sbjct: 126 WLVWRKYFDWRIWASLVPIVGGILLTSITELSFNVFGFCAALFGCLATSTKTILAESLL- 184

Query: 111 SKAEKINFMNLLVYMAPMAASIF-LP-FTLYIEGIFIVY-----------LLLGNATIAY 157
               K + +N + YMAP A  I  LP F L   GI   +           +L  +  +A+
Sbjct: 185 -HGYKFDSINTVYYMAPFATMILGLPAFLLERNGILDWFEAHPSPWSALIILFNSGVLAF 243

Query: 158 LVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS 217
            +N + F V + T  +T  V GN K A+A  V  MIF+NP++ M      +T +    Y 
Sbjct: 244 CLNFSIFYVIQSTTAVTFNVAGNLKVAVAVFVSWMIFRNPISPMNAVGCGITLVGCTFYG 303

Query: 218 KVKK 221
            V+ 
Sbjct: 304 YVRH 307

GDP-mannose transporter that may be involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFN3|PT511_ARATH Probable sugar phosphate/phosphate translocator At5g11230 OS=Arabidopsis thaliana GN=At5g11230 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 73  IVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMA-AS 131
           + +A+  E  F + G ++ +G+    A++  + QILL  K  K+N +  L Y+AP   A 
Sbjct: 153 VAIAAYGEARFDVWGVILQLGAVAFEATRLVLIQILLGDKGIKLNPITSLYYVAPCCLAF 212

Query: 132 IFLPFTLYIE--------GIFIVYLLLG-NATIAYLVNLTKFLVRKHTCTLTLQVLGNAK 182
           +F+P+ +Y+E           + Y + G N+  A+ +NL  FL+   T  LT+ V G  K
Sbjct: 213 LFIPW-IYVEFPVLRDTSSFHLDYAIFGANSFCAFALNLAVFLLVGKTSALTMNVAGVVK 271

Query: 183 AALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220
             L       + K+ VT + +  + +  +    Y+  K
Sbjct: 272 DWLLIAFSWSVIKDTVTPINLFGYGIAFLGVAYYNHAK 309

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6T0|PT525_ARATH Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana GN=At5g25400 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 56  KKEF--AEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKA 113
           KKE   +E    ++ +   + +A+  E  F + G ++ +G+    A++  + QILLTSK 
Sbjct: 134 KKEGFKSETMMNMLSISFGVAIAAYGEARFDVWGVILQLGAVAFEATRLVMIQILLTSKG 193

Query: 114 EKINFMNLLVYMAPMA-ASIFLPFTL-------YIEGIFIVYLLLG-NATIAYLVNLTKF 164
             +N +  L Y+AP   A +F+P+ +               YL+ G N+  A+ +NL  F
Sbjct: 194 ITLNPITSLYYVAPCCLAFLFIPWIVVEFPILRDTSSFHFDYLIFGTNSFCAFALNLAVF 253

Query: 165 LVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220
           L+   T  LT+ V G  K  L       + K+ VT + +  + +  +    Y+  K
Sbjct: 254 LLVGKTSALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLFGYGIAFLGVAYYNHAK 309

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PGC7|S35E3_MOUSE Solute carrier family 35 member E3 OS=Mus musculus GN=Slc35e3 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 89/170 (52%), Gaps = 23/170 (13%)

Query: 47  AISTFLLTCKKEFA-EVYYALMPVVLVIVLASNNEPLFYLLGFL-VCIGSTTRRASKYAI 104
           AI TF    +K F+  +   L+P+ + ++L S  +  F+ LG +   +G         ++
Sbjct: 116 AIQTFWY--QKRFSVRIQLTLIPITVGVILNSYYDVKFHSLGMVFAALGVVVT-----SL 168

Query: 105 QQILLTSKAE--KINFMNLLVYMAPMAASIFL---PF--TLYIEG-IFIVY------LLL 150
            Q+ + +K    ++N M LL Y APM++++ L   PF   ++ EG IF  +      ++L
Sbjct: 169 YQVWVGAKQHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFAEGGIFGPWSVSALLMVL 228

Query: 151 GNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTV 200
            +  IA++VNL+ + +  +T  +T  + G+ K  +      ++FK+P++V
Sbjct: 229 LSGIIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLCGGYILFKDPLSV 278

Putative transporter.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
224074741	361	predicted protein [Populus trichocarpa]	0.986	0.623	0.677	5e-83
255537165	360	Triose phosphate/phosphate translocator,	0.986	0.625	0.693	2e-79
225426684	352	PREDICTED: probable sugar phosphate/phos	0.986	0.639	0.681	1e-78
449460451	358	PREDICTED: probable sugar phosphate/phos	0.986	0.628	0.681	3e-78
356514182	354	PREDICTED: probable sugar phosphate/phos	0.986	0.635	0.673	4e-77
224054031	361	predicted protein [Populus trichocarpa]	0.986	0.623	0.657	5e-76
388512237	354	unknown [Medicago truncatula]	0.982	0.632	0.663	8e-76
356563286	355	PREDICTED: probable sugar phosphate/phos	1.0	0.642	0.661	1e-75
357476987	426	Solute carrier family 35 member E4 [Medi	0.978	0.523	0.662	4e-74
15221371	361	Nucleotide-sugar transporter family prot	0.969	0.612	0.614	3e-73

>gi|224074741|ref|XP_002304449.1| predicted protein [Populus trichocarpa] gi|222841881|gb|EEE79428.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 166/245 (67%), Positives = 190/245 (77%), Gaps = 20/245 (8%)

Query: 4   LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
           L+ ILS+KQF+KIFALSAIFCFSVVCGNTSLRY       A+GA T FF AI  FL+TCK
Sbjct: 117 LQHILSRKQFMKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCK 176

Query: 57  KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
           KE AEVY AL+PVV  IVLASN+EPLF+L GFLVC+GST  RA K  +Q ILLTS+AEK+
Sbjct: 177 KESAEVYCALLPVVFGIVLASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKL 236

Query: 117 NFMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVNLTK 163
           + MNLL+YMAPMAA I LPFTLYIEG              FIV+LL GNAT+AYLVNLT 
Sbjct: 237 HSMNLLLYMAPMAALILLPFTLYIEGNVAAITIEKASGDPFIVFLLAGNATVAYLVNLTN 296

Query: 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
           FLV +HT  LTLQVLGNAKAA+AAV+ V+IF+NPVTVMGM  F VT M  VLYS+ KKR 
Sbjct: 297 FLVTRHTSALTLQVLGNAKAAVAAVISVLIFRNPVTVMGMAGFAVTIMGVVLYSEAKKRS 356

Query: 224 KISTH 228
           K++TH
Sbjct: 357 KVTTH 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537165|ref|XP_002509649.1| Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis] gi|223549548|gb|EEF51036.1| Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/245 (69%), Positives = 192/245 (78%), Gaps = 20/245 (8%)

Query: 4   LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
           L+ ILS+KQFLKIFALSAIFCFSVVCGNTSLRY       A+GA T FF AI  FL+TCK
Sbjct: 116 LQHILSRKQFLKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCK 175

Query: 57  KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
           KE AEVY AL+PVV  IVLASN+EPLF+L GFLVC+GST  RA K  +Q ILLTS+AEK+
Sbjct: 176 KESAEVYCALLPVVFGIVLASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKL 235

Query: 117 NFMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVNLTK 163
           + MNLL+YMAPMAA I LPFTLYIEG              FIV+LL+GNAT+AYLVNLT 
Sbjct: 236 HSMNLLLYMAPMAALILLPFTLYIEGNVAANTIEKAKGDPFIVFLLIGNATVAYLVNLTN 295

Query: 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
           FLV KHT  LTLQVLGNAKAA+AAVV V+IF+NPVTVMGMT F VT M  VLYS+ KKR 
Sbjct: 296 FLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRS 355

Query: 224 KISTH 228
           K++TH
Sbjct: 356 KVTTH 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426684|ref|XP_002281623.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 isoform 1 [Vitis vinifera] gi|359474280|ref|XP_003631429.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 isoform 2 [Vitis vinifera] gi|297742646|emb|CBI34795.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 167/245 (68%), Positives = 191/245 (77%), Gaps = 20/245 (8%)

Query: 4   LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
           L+ ILS++QFLKIFALSAIFCFSVVCGNTSLRY       A+GA T FF AI  FL+TCK
Sbjct: 108 LQHILSRRQFLKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCK 167

Query: 57  KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
           KE  EVY AL+PVV  IVLASN+EPLF+L GFL+CIGST  RA K  +Q ILLTS+AEK+
Sbjct: 168 KETGEVYLALLPVVFGIVLASNSEPLFHLFGFLICIGSTAGRALKSVVQGILLTSEAEKL 227

Query: 117 NFMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVNLTK 163
           + MNLL+YMAPMAA I LPFTLYIEG              FI++LL+GNAT+AYLVNLT 
Sbjct: 228 HSMNLLLYMAPMAALILLPFTLYIEGNVAAFTVEKARGDSFIIFLLIGNATVAYLVNLTN 287

Query: 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
           FLV KHT  LTLQVLGNAKAA+AAVV V+IF+NPVTVMGMT F VT M  VLYS+ KKR 
Sbjct: 288 FLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRS 347

Query: 224 KISTH 228
           K++TH
Sbjct: 348 KVTTH 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460451|ref|XP_004147959.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500-like [Cucumis sativus] gi|449494278|ref|XP_004159500.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500-like [Cucumis sativus]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/245 (68%), Positives = 189/245 (77%), Gaps = 20/245 (8%)

Query: 4   LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
           L+ ILS+KQF KIFALSAIFCFSVVCGNTSLRY       A+GA T FF AI  FL+TCK
Sbjct: 114 LQHILSRKQFFKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCK 173

Query: 57  KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
           KE AEVY AL+PVV  IVLASN+EPLF+  GFLVC+GST  RA K  +Q ILLTS+AEK+
Sbjct: 174 KESAEVYLALLPVVFGIVLASNSEPLFHFFGFLVCVGSTAGRALKSVVQGILLTSEAEKL 233

Query: 117 NFMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVNLTK 163
           + MNLL+YMAPMAA I LPF+LYIEG              FIV+LLLGNAT+AYLVNLT 
Sbjct: 234 HSMNLLLYMAPMAAMILLPFSLYIEGNVAAITVEKARGNSFIVFLLLGNATVAYLVNLTN 293

Query: 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
           FLV KHT  LTLQVLGNAKAA+AAVV V+IF+NPVTVMGM  F VT M  VLYS+ KKR 
Sbjct: 294 FLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMAGFAVTIMGVVLYSEAKKRS 353

Query: 224 KISTH 228
           K++TH
Sbjct: 354 KVTTH 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514182|ref|XP_003525785.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500-like [Glycine max]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 165/245 (67%), Positives = 189/245 (77%), Gaps = 20/245 (8%)

Query: 4   LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
           L+ I S+KQFLKIFALSAIFCFSVVCGNTSLRY       A+GA T FF AI  FL+TCK
Sbjct: 110 LQHIHSKKQFLKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCK 169

Query: 57  KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
           KE  EVY AL+PVV  IV+ASN+EPLF+L GFLVC+GST  RA K  +Q ILLTS+AEK+
Sbjct: 170 KETGEVYLALLPVVFGIVVASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKL 229

Query: 117 NFMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVNLTK 163
           + MNLL+YMAP+AA I LPFTLYIEG              FIV+LLLGNAT+AYLVNLT 
Sbjct: 230 HSMNLLLYMAPLAAMILLPFTLYIEGNVLALTIEKAKGDPFIVFLLLGNATVAYLVNLTN 289

Query: 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
           FLV KHT  LTLQVLGNAKAA+AAVV V+IF+NPVTVMGM  F +T M  VLYS+ KKR 
Sbjct: 290 FLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMAGFGITIMGVVLYSEAKKRS 349

Query: 224 KISTH 228
           K++TH
Sbjct: 350 KVTTH 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054031|ref|XP_002298084.1| predicted protein [Populus trichocarpa] gi|222845342|gb|EEE82889.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 161/245 (65%), Positives = 187/245 (76%), Gaps = 20/245 (8%)

Query: 4   LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
           L+ I S+KQF+KIFALSAIFCFSVVCGNTSLRY       A+GA T FF AI  FL+TCK
Sbjct: 117 LQHISSRKQFMKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCK 176

Query: 57  KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
           KE A VY AL+PVV  IVLASN+EPLF+L GFLVC+GST  RA K  +Q ILLTS+AEK+
Sbjct: 177 KESAGVYCALLPVVFGIVLASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKL 236

Query: 117 NFMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVNLTK 163
           + MNLL+YMAPMAA I LPFTLYIEG              +IV+LL+GN+T+AYLVNLT 
Sbjct: 237 HSMNLLLYMAPMAALILLPFTLYIEGNVASITIEKARGDPYIVFLLIGNSTVAYLVNLTN 296

Query: 164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
           FLV KHT  LTLQVLGNAKAA+AA V ++IF+NPVT MGM  F VT M  VLYS+ KKR 
Sbjct: 297 FLVTKHTSALTLQVLGNAKAAVAAAVSILIFRNPVTAMGMVGFAVTIMGVVLYSEAKKRS 356

Query: 224 KISTH 228
           K++TH
Sbjct: 357 KVTTH 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512237|gb|AFK44180.1| unknown [Medicago truncatula]

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 162/244 (66%), Positives = 190/244 (77%), Gaps = 20/244 (8%)

Query: 5   KTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKK 57
           + I S+KQFLKIFALSAIFCFSVVCGNTSLRY       A+GA T FF AI  FL+TCKK
Sbjct: 111 QQIHSKKQFLKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKK 170

Query: 58  EFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKIN 117
           E AEVY AL+PVVL IV+++N+EPLF+L GFLVC+GST  RA K  +Q I+LTS+AEK++
Sbjct: 171 ETAEVYLALLPVVLGIVVSTNSEPLFHLFGFLVCVGSTAGRALKSVVQGIILTSEAEKLH 230

Query: 118 FMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVNLTKF 164
            MNLL+YMAP+AA I LP TLYIEG              FIV+LL+GNAT+AYLVNLT F
Sbjct: 231 SMNLLLYMAPLAAMILLPVTLYIEGNVFAITIEKARSDPFIVFLLIGNATVAYLVNLTNF 290

Query: 165 LVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFK 224
           LV KHT  LTLQVLGNAKAA+AAVV V+IF+NPVTVMGMT F +TTM  VLYS+ KKR K
Sbjct: 291 LVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFGITTMGVVLYSEAKKRSK 350

Query: 225 ISTH 228
            ++H
Sbjct: 351 GASH 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563286|ref|XP_003549895.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g12500-like [Glycine max]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 164/248 (66%), Positives = 188/248 (75%), Gaps = 20/248 (8%)

Query: 1   LSRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLL 53
           L  L+ I S+KQF KI ALSAIFCFSVVCGNTSLRY       A+GA T FF AI  FL+
Sbjct: 108 LVPLQHIHSKKQFFKILALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLI 167

Query: 54  TCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKA 113
           TCKKE  EVY AL+PVV  IV+ASN+EPLF+L GFLVC+GST  RA K  +Q ILLTS+A
Sbjct: 168 TCKKETGEVYLALLPVVFGIVVASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILLTSEA 227

Query: 114 EKINFMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVN 160
           EK++ MNLL+YMAP+AA I LPFTLYIEG              FIV+LLLGNAT+AYLVN
Sbjct: 228 EKLHSMNLLLYMAPLAALILLPFTLYIEGNVLALTVEKAKGDPFIVFLLLGNATVAYLVN 287

Query: 161 LTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK 220
           LT FLV KHT  LTLQVLGNAKAA+AAVV V+IF+NPVTVMGM  F +T M  VLYS+ K
Sbjct: 288 LTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMAGFGITIMGVVLYSEAK 347

Query: 221 KRFKISTH 228
           KR K++TH
Sbjct: 348 KRSKVTTH 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476987|ref|XP_003608779.1| Solute carrier family 35 member E4 [Medicago truncatula] gi|355509834|gb|AES90976.1| Solute carrier family 35 member E4 [Medicago truncatula]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 161/243 (66%), Positives = 188/243 (77%), Gaps = 20/243 (8%)

Query: 5   KTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKK 57
           + I S+KQFLKIFALSAIFCFSVVCGNTSLRY       A+GA T FF AI  FL+TCKK
Sbjct: 111 QQIHSKKQFLKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKK 170

Query: 58  EFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKIN 117
           E AEVY AL+PVVL IV+++N+EPLF+L GFLVC+GST  RA K  +Q I+LTS+AEK++
Sbjct: 171 ETAEVYLALLPVVLGIVVSTNSEPLFHLFGFLVCVGSTAGRALKSVVQGIILTSEAEKLH 230

Query: 118 FMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVNLTKF 164
            MNLL+YMAP+AA I LP TLYIEG              FIV+LL+GNAT+AYLVNLT F
Sbjct: 231 SMNLLLYMAPLAAMILLPVTLYIEGNVFAITIEKARSDPFIVFLLIGNATVAYLVNLTNF 290

Query: 165 LVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFK 224
           LV KHT  LTLQVLGNAKAA+AAVV V+IF+NPVTVMGMT F +T M  VLYS+ KKR K
Sbjct: 291 LVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFGITIMGVVLYSEAKKRSK 350

Query: 225 IST 227
            S+
Sbjct: 351 ESS 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221371|ref|NP_172712.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|75173828|sp|Q9LDH3.1|PT112_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At1g12500 gi|8778643|gb|AAF79651.1|AC025416_25 F5O11.25 [Arabidopsis thaliana] gi|9502394|gb|AAF88101.1|AC025417_29 T12C24.5 [Arabidopsis thaliana] gi|26449593|dbj|BAC41922.1| unknown protein [Arabidopsis thaliana] gi|332190769|gb|AEE28890.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 148/241 (61%), Positives = 178/241 (73%), Gaps = 20/241 (8%)

Query: 5   KTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKK 57
           + ILS++QFLKI +LSAIFC SVVCGNTSLRY       A+GA T FF A+ +FL+TCK 
Sbjct: 117 QHILSRRQFLKILSLSAIFCLSVVCGNTSLRYIPVSFNQAIGATTPFFTAVFSFLITCKT 176

Query: 58  EFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKIN 117
           E  EVY AL+PVV  IVLASN+EP F+L GFL+C+ ST  RA K  +Q I+LTS++EK++
Sbjct: 177 ESTEVYLALLPVVSGIVLASNSEPSFHLFGFLICVASTAGRALKSVVQGIILTSESEKLH 236

Query: 118 FMNLLVYMAPMAASIFLPFTLYIEG-------------IFIVYLLLGNATIAYLVNLTKF 164
            MNLL+YMAPMAA I LPFTLYIEG               I++LL GNAT+AYLVNLT F
Sbjct: 237 SMNLLLYMAPMAACILLPFTLYIEGNVLRVLIEKARTDPLIIFLLAGNATVAYLVNLTNF 296

Query: 165 LVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFK 224
           LV KHT  LTLQVLGN KAA+AA V V+IF+NPVTVMG+  F VT M  VLYS+ +KR K
Sbjct: 297 LVTKHTSALTLQVLGNGKAAVAAGVSVLIFRNPVTVMGIAGFGVTIMGVVLYSEARKRSK 356

Query: 225 I 225
           +
Sbjct: 357 L 357

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2034730	361	AT1G12500 [Arabidopsis thalian	0.960	0.606	0.573	1e-61
TAIR|locus:2166384	309	AT5G05820 [Arabidopsis thalian	0.969	0.715	0.481	6.9e-47
TAIR|locus:2074713	308	AT3G11320 [Arabidopsis thalian	0.969	0.717	0.473	1.1e-46
TAIR|locus:2146683	309	AT5G04160 "AT5G04160" [Arabido	0.969	0.715	0.439	1.5e-42
TAIR|locus:2076239	355	AT3G10290 [Arabidopsis thalian	0.969	0.622	0.419	6.6e-42
DICTYBASE|DDB_G0287319	348	DDB_G0287319 "TPT transporter	0.697	0.456	0.294	6.9e-11
ASPGD|ASPL0000040742	400	ugtA [Emericella nidulans (tax	0.934	0.532	0.269	3.1e-10
TAIR|locus:2093596	375	AT3G17430 [Arabidopsis thalian	0.956	0.581	0.234	1.8e-07
TAIR|locus:2204690	336	AT1G77610 [Arabidopsis thalian	0.609	0.413	0.306	2.7e-07
TAIR|locus:2024827	332	AT1G53660 [Arabidopsis thalian	0.903	0.620	0.238	6.5e-07

TAIR|locus:2034730 AT1G12500 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 137/239 (57%), Positives = 165/239 (69%)

Query:     7 ILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEF 59
             ILS++QFLKI +LSAIFC SVVCGNTSLRY       A+GA T FF A+ +FL+TCK E 
Sbjct:   119 ILSRRQFLKILSLSAIFCLSVVCGNTSLRYIPVSFNQAIGATTPFFTAVFSFLITCKTES 178

Query:    60 AEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFM 119
              EVY AL+PVV  IVLASN+EP F+L GFL+C+ ST  RA K  +Q I+LTS++EK++ M
Sbjct:   179 TEVYLALLPVVSGIVLASNSEPSFHLFGFLICVASTAGRALKSVVQGIILTSESEKLHSM 238

Query:   120 NLLVYMAPMAASIFLPFTLYIEGI-------------FIVYLLLGNATIAYLVNLTKFLV 166
             NLL+YMAPMAA I LPFTLYIEG               I++LL GNAT+AYLVNLT FLV
Sbjct:   239 NLLLYMAPMAACILLPFTLYIEGNVLRVLIEKARTDPLIIFLLAGNATVAYLVNLTNFLV 298

Query:   167 RKHTCTLTLQXXXXXXXXXXXXXXXMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKI 225
              KHT  LTLQ               +IF+NPVTVMG+  F VT M  VLYS+ +KR K+
Sbjct:   299 TKHTSALTLQVLGNGKAAVAAGVSVLIFRNPVTVMGIAGFGVTIMGVVLYSEARKRSKL 357

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

TAIR|locus:2166384 AT5G05820 [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 116/241 (48%), Positives = 149/241 (61%)

Query:     4 LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
             ++TI S+ QF KI ALS +FC SVV GN SLR+       A+GA T FF A+  +L+T K
Sbjct:    68 MQTIRSRVQFFKIAALSLVFCVSVVFGNISLRFLPVSFNQAIGATTPFFTAVFAYLMTRK 127

Query:    57 KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
             KE    Y+ L+PVV  +V+AS  EP F+L GFL+CI +T  RA K  +Q ILL+S+ EK+
Sbjct:   128 KEAWLTYFTLVPVVTGVVIASGGEPSFHLFGFLMCIAATAARALKSVLQGILLSSEGEKL 187

Query:   117 NFMNLLVYMAPMAASIFLPFTLYIE----GI--------F-IVYLLLGNATIAYLVNLTK 163
             N MNLL+YMAP+A  + LP TL +E    GI        F IV+ LL N+ +AYLVNLT 
Sbjct:   188 NSMNLLLYMAPIAVVLLLPATLIMEKNVVGITIALARDDFRIVWYLLFNSALAYLVNLTN 247

Query:   164 FLVRKHTCTLTLQXXXXXXXXXXXXXXXMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
             FLV  HT  LTLQ               +IFKNPV+V GM  + +T    +LYS+ KKR 
Sbjct:   248 FLVTNHTSALTLQVLGNAKGAVAVVVSILIFKNPVSVTGMLGYSLTVCGVILYSEAKKRN 307

Query:   224 K 224
             K
Sbjct:   308 K 308

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2074713 AT3G11320 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 114/241 (47%), Positives = 150/241 (62%)

Query:     4 LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
             ++TI S+ QFLKI ALS +FC SVV GN SLR+       A+GA T FF A+  +L+T K
Sbjct:    68 MQTIRSRVQFLKIAALSLVFCVSVVFGNISLRFLPVSFNQAIGATTPFFTAVFAYLITFK 127

Query:    57 KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
             +E    Y+ L+PVV  +V+AS +EP F+L GF++CI +T  RA K  +Q ILL+S+ EK+
Sbjct:   128 REAWLTYFTLVPVVTGVVIASGSEPSFHLFGFIMCIAATAARALKSVLQGILLSSEGEKL 187

Query:   117 NFMNLLVYMAPMAASIFLPFTLYIE----GI--------F-IVYLLLGNATIAYLVNLTK 163
             N MNLL+YMAP+A    LP TL +E    GI        F IV+ LL N+ +AY VNLT 
Sbjct:   188 NSMNLLLYMAPIAVVFLLPATLIMEKNVVGITIALARDDFRIVWYLLFNSALAYFVNLTN 247

Query:   164 FLVRKHTCTLTLQXXXXXXXXXXXXXXXMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
             FLV KHT  LTLQ               +IF+NPV+V GM  + +T    +LYS+ KKR 
Sbjct:   248 FLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMLGYSLTVCGVILYSEAKKRS 307

Query:   224 K 224
             K
Sbjct:   308 K 308

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2146683 AT5G04160 "AT5G04160" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 106/241 (43%), Positives = 144/241 (59%)

Query:     4 LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
             L+ + S+ QFLK+  LS +FC SVV GN SLRY       AVGA T FF A+  +L+T K
Sbjct:    69 LQHLKSRSQFLKVATLSIVFCASVVGGNISLRYLPVSFNQAVGATTPFFTALFAYLMTFK 128

Query:    57 KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
             +E    Y AL+PVV  +V+AS  EP F+  GF++CI +T  RA K  +Q ILL+S+ EK+
Sbjct:   129 REAWVTYGALVPVVAGVVIASGGEPGFHWFGFIMCISATAARAFKSVLQGILLSSEGEKL 188

Query:   117 NFMNLLVYMAPMAASIFLPFTLYIE-GIFIV---------Y---LLLGNATIAYLVNLTK 163
             N MNL++YM+P+A    LP TL++E  +  V         Y   LLL N+ +AY  NL  
Sbjct:   189 NSMNLMLYMSPIAVIALLPVTLFMEPDVISVTLTLAKQHQYMWILLLVNSVMAYSANLLN 248

Query:   164 FLVRKHTCTLTLQXXXXXXXXXXXXXXXMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
             FLV KHT  LTLQ               +IF+NPVTVMG+  + +T +  V Y + K+RF
Sbjct:   249 FLVTKHTSALTLQVLGNAKGAVAVVISILIFQNPVTVMGIGGYSITVLGVVAYGETKRRF 308

Query:   224 K 224
             +
Sbjct:   309 R 309

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2076239 AT3G10290 [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 101/241 (41%), Positives = 143/241 (59%)

Query:     4 LKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCK 56
             L+ + S+ QFLK+  LS +FC SVV GN SLRY       AVGA T FF A+  +++T K
Sbjct:   115 LQYLKSRSQFLKVATLSIVFCASVVGGNISLRYLPVSFNQAVGATTPFFTALFAYIMTFK 174

Query:    57 KEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKI 116
             +E    Y AL+PVV  +V+AS  EP F+  GF++CI +T  RA K  +Q ILL+S+ E++
Sbjct:   175 REAWVTYGALVPVVTGVVIASGGEPGFHWFGFIMCISATAARAFKSVLQGILLSSEGERL 234

Query:   117 NFMNLLVYMAPMAASIFLPFTLYIE-GIFIVYLLLG------------NATIAYLVNLTK 163
             N MNL++YM+P+A    LP T+++E  +  V L LG            N+ +AY  NL  
Sbjct:   235 NSMNLMLYMSPIAVIALLPVTIFMEPDVMSVTLTLGRQHKYMYILLLVNSVMAYSANLLN 294

Query:   164 FLVRKHTCTLTLQXXXXXXXXXXXXXXXMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF 223
             FLV KHT  LTLQ               ++F+NPVTVMG+  + +T +  V Y + K+RF
Sbjct:   295 FLVTKHTSALTLQVLGNAKGAVAVVISILLFRNPVTVMGIGGYSITVLGVVAYGETKRRF 354

Query:   224 K 224
             +
Sbjct:   355 R 355

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

DICTYBASE|DDB_G0287319 DDB_G0287319 "TPT transporter family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 157 (60.3 bits), Expect = 6.9e-11, P = 6.9e-11
 Identities = 53/180 (29%), Positives = 87/180 (48%)

Query:     9 SQKQFLKIFALSAIFCFSVVCGNTSLRYA-------VGAATLFFNAISTFLLTC-----K 56
             S KQF+ I  LS +FC ++V GN SLR+        V ++   F  I T L        K
Sbjct:    80 SGKQFINIMILSILFCSNIVFGNVSLRWVPVSFMQTVKSSVPLFTVILTTLFFSNIGGKK 139

Query:    57 KEFAE-VYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEK 115
               F    Y +++P+V  + +AS +E  F   GF+  + S+   A    +  ++LT   ++
Sbjct:   140 TTFTRGTYLSMIPIVGGVCVASLSEVNFNQAGFIAALASSILSAVFAIVSGLILT---QQ 196

Query:   116 INFMNLLVYMAPMAASIFLPFTLYIEGIFIV--YLLLGNA---TIAYLVNLTKFLVRKHT 170
             +N +NLL YM+P++  +  P + ++E   I   + L G +    I  L  L  FL+   T
Sbjct:   197 MNAVNLLYYMSPISCCLLFPLSAFMEWNAIANEWPLYGESKPIVILLLSGLIAFLLNTFT 256

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ASPGD|ASPL0000040742 ugtA [Emericella nidulans (taxid:162425)]

 Score = 155 (59.6 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 63/234 (26%), Positives = 111/234 (47%)

Query:     5 KTI-LSQKQFLK-IFALSAIFCFSVVCGNTSLRYAVGAATLFFNA---ISTFLLTCKKEF 59
             KT+ ++ + +L+ I  +   F  S++CGN +  Y   A      A   ++  L T     
Sbjct:    99 KTVKMTGRVYLRAIVPIGLFFSLSLICGNVTYLYLSVAFIQMLKATTPVAVLLATWGMGM 158

Query:    60 AEVYYALMPVVLVIV----LASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEK 115
             A V   ++  V VIV    +AS  E  F  +GFL  I      A++  + Q LL+S   K
Sbjct:   159 APVNLKVLTNVSVIVFGVIIASFGEIKFVFIGFLFQIAGIIFEATRLVMVQRLLSSAEYK 218

Query:   116 INFMNLLVYMAPMAA------SIFLPF-TLYIEGIFIV--YLLLGNATIAYLVNLTK-FL 165
             ++ +  L Y AP+ A      ++FL   TL ++ I+ V  + LL NA +A+++N++  FL
Sbjct:   219 MDPLVSLYYFAPVCAVMNGVTALFLEVPTLTMDHIYNVGVWTLLANAMVAFMLNVSVVFL 278

Query:   166 VRKHTCTLTLQXXXXXXXXXXXXXXXMIFKNPVTVMGMTEFVVTTMIAVLYSKV 219
             + K T +L +                +I+  PVT +    + +  +I ++Y K+
Sbjct:   279 IGK-TSSLVMTLCGVLKDILLVVASMVIWNTPVTALQFFGYSIA-LIGLVYYKL 330

GO:0008643 "carbohydrate transport" evidence=ISO;IMP

GO:0043936 "asexual sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0070787 "conidiophore development" evidence=IMP

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0035690 "cellular response to drug" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0030448 "hyphal growth" evidence=IEA

GO:0051278 "fungal-type cell wall polysaccharide biosynthetic process" evidence=IEA

TAIR|locus:2093596 AT3G17430 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 56/239 (23%), Positives = 108/239 (45%)

Query:     5 KTILSQKQFLKIFA-----LSAIFCFSVVCGNTSLRYAVGAATLFFNA---ISTFLLT-- 54
             K +   K   +I+A     +SA F  S+  GNT+  +   A      A   ++TF++   
Sbjct:    67 KVVAPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFIMAVV 126

Query:    55 C--KKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSK 112
             C   K   +V+  ++ V + +V++S  E  F ++G +  +      A +  + Q+LL  K
Sbjct:   127 CGTDKPRCDVFSNMLLVSVGVVISSYGEIHFNIVGTVYQVTGIFAEALRLVLTQVLLQKK 186

Query:   113 AEKINFMNLLVYMAPMA-ASIFLPF------TLYIEGI-FIVYLLLGNATIAYLVNLTKF 164
                +N +  L Y+AP +   + LP+      T+ +  I F  ++   NA  A  +N + F
Sbjct:   187 GLTLNPITSLYYIAPCSFVFLALPWYVLEKPTMEVSQIQFNFWIFFSNALCALALNFSIF 246

Query:   165 LVRKHTCTLTLQXXXXXXXXXXXXXXXMIF-KNPVTVMGMTEFVVTTMIAVLYSKVKKR 222
             LV   T  +T++               +IF ++ +T + +T + +     V+Y+ +K R
Sbjct:   247 LVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNITGYAIALCGVVMYNYIKVR 305

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2204690 AT1G77610 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 46/150 (30%), Positives = 76/150 (50%)

Query:     1 LSRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRYAVGA--ATL--FFNAISTFL--LT 54
             L  L  +  + ++ +IF +S +FC ++V GN SLRY   +   T+  F  A +  L  L 
Sbjct:    63 LKPLIVVDPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLV 122

Query:    55 CKKEFA-EVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKA 113
              +K F   ++ +L+P+V  I+L S  E  F + GF   +      ++K  + + LL    
Sbjct:   123 WRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLL--HG 180

Query:   114 EKINFMNLLVYMAPMAASIF-LPFTLYIEG 142
              K + +N + YMAP A  I  +P  L +EG
Sbjct:   181 YKFDSINTVYYMAPFATMILGIP-ALLLEG 209

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005457 "GDP-fucose transmembrane transporter activity" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

GO:0005460 "UDP-glucose transmembrane transporter activity" evidence=IDA

GO:0015783 "GDP-fucose transport" evidence=IDA

GO:0015786 "UDP-glucose transport" evidence=IDA

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2024827 AT1G53660 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 6.5e-07, P = 6.5e-07
 Identities = 53/222 (23%), Positives = 101/222 (45%)

Query:    16 IFALSAIFCFSVVCGNTSLRYAVGAATLFFNAI---STFLL-TCKK-EFAEVYYAL-MPV 69
             +  + A+F  ++  GNT+  Y   A +    AI   + F+L  C   E       L M V
Sbjct:    89 VIPIGAMFAMTLWLGNTAYLYITVAFSQMLKAIMPVAVFILGVCVGLEIMSCKMLLIMSV 148

Query:    70 VLVIVLASNNEPL-FYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPM 128
             +   VL S+   L    +G +  +G     A +  + +IL+  K  K+N ++L+ YM+P 
Sbjct:   149 ISFGVLVSSYGELNINWVGVVYQMGGIVSEALRLILMEILVKRKGIKLNPLSLMYYMSPC 208

Query:   129 AA-SIFLPFTLYIEGI------FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQXXXXX 181
             +A  +F+P+ +++E        F V +L  N+   + +NL+ FLV   T  LT++     
Sbjct:   209 SAICLFIPW-IFLEKSKMDTWNFHVLVLSLNSLCTFALNLSVFLVISRTSALTIRIAGVV 267

Query:   182 XXXXXXXXXXMIF-KNPVTVMGMTEFVVTTMIAVLYSKVKKR 222
                       ++F +  +T++ +  + V  +    Y+  K +
Sbjct:   268 KDWLVVLVSALLFAETKLTIINLFGYAVAIVGVATYNNHKPK 309

GO:0005886 "plasma membrane" evidence=ISM

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LDH3	PT112_ARATH	No assigned EC number	0.6141	0.9692	0.6121	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	1e-11
PTZ00343	350	PTZ00343, PTZ00343, triose or hexose phosphate/pho	3e-04

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 17/148 (11%)

Query: 87  GFLVCIGSTTRRASKYAIQQILLTSKAE-KINFMNLLVYMAPMAASIFLPFTLYIEG--- 142
           GF++ + ++   A +  + Q LL  K   K+N + LL Y++P+A  + LP  L+ EG   
Sbjct: 1   GFILALAASALFALRLILSQKLLKKKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFKL 60

Query: 143 -------------IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVV 189
                           V LLL +  +A+L NL+ F +   T  LT  V G  K  +  V+
Sbjct: 61  GKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVL 120

Query: 190 LVMIFKNPVTVMGMTEFVVTTMIAVLYS 217
            V+IF +PVT + +    +  +  VLYS
Sbjct: 121 SVIIFGDPVTFLNILGLAIAILGVVLYS 148

This family includes transporters with a specificity for triose phosphate. Length = 149

>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 61/247 (24%), Positives = 97/247 (39%), Gaps = 36/247 (14%)

Query: 7   ILSQKQFLKIFALSAIFCF--------SVVCGNTSLRYAVGAATLFFNAISTFLLTCKKE 58
           I S K FLK F    +           S+  G  S  + V AA   F A+ + L    K+
Sbjct: 107 IKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFL--KQ 164

Query: 59  FAEV--YYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKA--- 113
           F  +  Y +L+P+V  + LAS  E  F  L F   + S    + +    +  + +K+   
Sbjct: 165 FLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIG 224

Query: 114 EKINFMNLLVYMAPMAASIFLPFTLYIEG--------------------IFIVYLLLGNA 153
           E +   N+ + +  +A+ I LP  L+ EG                    I I  +   + 
Sbjct: 225 ENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFF-SG 283

Query: 154 TIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIA 213
              YL N   F        +T  V    K  +  V  ++IF+  VT++G     V  + A
Sbjct: 284 VWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGA 343

Query: 214 VLYSKVK 220
           +LYS  K
Sbjct: 344 LLYSLFK 350

Length = 350

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.98
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.97
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.97
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.94
PLN00411	358	nodulin MtN21 family protein; Provisional	99.92
PRK11689	295	aromatic amino acid exporter; Provisional	99.92
PRK11272	292	putative DMT superfamily transporter inner membran	99.9
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.89
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.89
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.88
PRK15430	296	putative chloramphenical resistance permease RarD;	99.87
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.87
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.86
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.85
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.84
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.84
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.78
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.76
KOG1580	337	consensus UDP-galactose transporter related protei	99.74
KOG1581	327	consensus UDP-galactose transporter related protei	99.71
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.7
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.7
KOG2765	416	consensus Predicted membrane protein [Function unk	99.68
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.67
COG2962	293	RarD Predicted permeases [General function predict	99.58
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.58
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.57
KOG1582	367	consensus UDP-galactose transporter related protei	99.57
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.56
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.49
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.36
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.35
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.16
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.12
COG2510	140	Predicted membrane protein [Function unknown]	99.09
KOG2766	336	consensus Predicted membrane protein [Function unk	99.07
PRK15430	296	putative chloramphenical resistance permease RarD;	99.06
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.97
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.91
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.82
PLN00411	358	nodulin MtN21 family protein; Provisional	98.71
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.61
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.53
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.42
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.41
COG2962	293	RarD Predicted permeases [General function predict	98.39
PRK11689	295	aromatic amino acid exporter; Provisional	98.35
PRK11272	292	putative DMT superfamily transporter inner membran	98.29
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.26
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.24
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.22
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.13
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.07
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.96
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.92
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.91
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.87
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.84
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.74
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.68
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.42
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.37
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.3
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.27
PRK13499	345	rhamnose-proton symporter; Provisional	97.25
COG2510	140	Predicted membrane protein [Function unknown]	97.24
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.23
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.2
PRK11431	105	multidrug efflux system protein; Provisional	96.99
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.95
COG2076	106	EmrE Membrane transporters of cations and cationic	96.77
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.66
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.58
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.5
PRK11431	105	multidrug efflux system protein; Provisional	96.25
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.23
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.21
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.06
COG2076	106	EmrE Membrane transporters of cations and cationic	96.03
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.99
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	95.55
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	95.45
KOG4510	346	consensus Permease of the drug/metabolite transpor	95.27
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.25
PRK13499	345	rhamnose-proton symporter; Provisional	95.13
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.77
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	94.72
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	94.63
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.53
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.4
KOG2765	416	consensus Predicted membrane protein [Function unk	94.33
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	92.64
KOG1581	327	consensus UDP-galactose transporter related protei	89.64
KOG2922	335	consensus Uncharacterized conserved protein [Funct	88.48
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	88.35
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	86.95
KOG3912	372	consensus Predicted integral membrane protein [Gen	83.29

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.98  E-value=4e-30  Score=217.26  Aligned_cols=217  Identities=21%  Similarity=0.258  Sum_probs=185.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC
Q 040323            8 LSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE   80 (228)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~   80 (228)
                      .++++++.+++.|++++....++|.+++|       ++++++|+++.+++++++|||++++++.++.++++|+.+...+|
T Consensus        60 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~  139 (302)
T TIGR00817        60 ISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE  139 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc
Confidence            45667899999999999999999999999       89999999999999999999999999999999999999877667


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHH----------------
Q 040323           81 PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIF----------------  144 (228)
Q Consensus        81 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------  144 (228)
                      .+.+..|+++++++++++++|.++.||.++  +++.|+.+.+.|+...+++.++|.....|.++                
T Consensus       140 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~  217 (302)
T TIGR00817       140 LSFNWAGFLSAMISNITFVSRNIFSKKAMT--IKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVT  217 (302)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCch
Confidence            777788999999999999999999999863  23689999999999999998888876544210                


Q ss_pred             -HHHHHHHHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          145 -IVYLLLGNAT-IAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       145 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                       .+...+..+. .....|...+.+++++||+++++.+++||+++++.|++++||++|..+++|+++++.|+.+|++.|+|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       218 KIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence             1111323333 33345556678999999999999999999999999999999999999999999999999999988877


Q ss_pred             hccc
Q 040323          223 FKIS  226 (228)
Q Consensus       223 ~~~~  226 (228)
                      |+..
T Consensus       298 ~~~~  301 (302)
T TIGR00817       298 KPKP  301 (302)
T ss_pred             CcCC
Confidence            6643

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.97  E-value=3.2e-29  Score=215.58  Aligned_cols=212  Identities=24%  Similarity=0.305  Sum_probs=185.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCC
Q 040323            9 SQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEP   81 (228)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~   81 (228)
                      ++++++++++.|+++.......+.++++       ++++++|+++++++++++|||++++++.+++++++|+.+...+|.
T Consensus       110 ~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~  189 (350)
T PTZ00343        110 LKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL  189 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc
Confidence            4568899999999988765556666665       999999999999999999999999999999999999999988888


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhccc---ccCChHHHHHHhhHHHHHHHHHHHHHHhHH---------------
Q 040323           82 LFYLLGFLVCIGSTTRRASKYAIQQILLTSKA---EKINFMNLLVYMAPMAASIFLPFTLYIEGI---------------  143 (228)
Q Consensus        82 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------  143 (228)
                      ++++.|++++++|++++++|+++.|+.+++++   ++.++.+...++.+.++++++|..+..|.+               
T Consensus       190 ~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~  269 (350)
T PTZ00343        190 HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTN  269 (350)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccc
Confidence            88899999999999999999999999876432   247788888888999999999887755431               


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323          144 ----FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV  219 (228)
Q Consensus       144 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~  219 (228)
                          ..++.++.+++..++.|.+.+.++++++|.++++.+++||+++++.|++++||++|+.+++|.++++.|+.+|++.
T Consensus       270 ~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        270 YTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence                1234566778888888888899999999999999999999999999999999999999999999999999999986


Q ss_pred             h
Q 040323          220 K  220 (228)
Q Consensus       220 k  220 (228)
                      |
T Consensus       350 k  350 (350)
T PTZ00343        350 K  350 (350)
T ss_pred             C
Confidence            4

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.97  E-value=3.3e-32  Score=227.32  Aligned_cols=225  Identities=35%  Similarity=0.509  Sum_probs=206.0

Q ss_pred             CcccccccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhh
Q 040323            2 SRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIV   74 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~   74 (228)
                      +|.+..+++.+++.++++|++++.+..++|.++.+       ++|+++|+++.++++++.+|+++++.+.++.+++.|+.
T Consensus        72 ~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~  151 (316)
T KOG1441|consen   72 VPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVA  151 (316)
T ss_pred             CCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEE
Confidence            45566667789999999999999999999999999       99999999999999999999999999999999999999


Q ss_pred             hhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHH-HHHHHHhHHH---------
Q 040323           75 LASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFL-PFTLYIEGIF---------  144 (228)
Q Consensus        75 l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~---------  144 (228)
                      +.+.+|.++|+.|.+.++.+.+..++++++.|+.+++++++.|+.++++|+.+.+...++ |.....|++.         
T Consensus       152 ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~  231 (316)
T KOG1441|consen  152 IASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPW  231 (316)
T ss_pred             EeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecccc
Confidence            999999999999999999999999999999999997667899999999999999999998 7665544421         


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          145 --IVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       145 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                        .....++..+++++.|++.|++++++||+++++.|++|+++.++.|+++|+|+.|+.+..|++++++|+.+|++.|+|
T Consensus       232 ~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~  311 (316)
T KOG1441|consen  232 FVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK  311 (316)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence              123445555999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hccc
Q 040323          223 FKIS  226 (228)
Q Consensus       223 ~~~~  226 (228)
                      ++.+
T Consensus       312 ~~~~  315 (316)
T KOG1441|consen  312 EKKG  315 (316)
T ss_pred             hhcc
Confidence            8765

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.94  E-value=3.8e-24  Score=180.90  Aligned_cols=217  Identities=18%  Similarity=0.193  Sum_probs=190.8

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323            6 TILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN   78 (228)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~   78 (228)
                      +.+++.++++..+.++++.++...+|.+++|       +.|++.|+++++.+++++|||++++++.++++.++|+.+...
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~  136 (303)
T PF08449_consen   57 PKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTL  136 (303)
T ss_pred             cCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeee
Confidence            4556678889999999999999999999999       999999999999999999999999999999999999999754


Q ss_pred             CCC----cc------hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH--H-hH---
Q 040323           79 NEP----LF------YLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY--I-EG---  142 (228)
Q Consensus        79 ~~~----~~------~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-~~---  142 (228)
                      +|.    +.      +..|+.+.+.+.++.+.+.++++|..++  .+.++.+.++|++..+.+..++....  . |.   
T Consensus       137 ~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~--~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~  214 (303)
T PF08449_consen  137 SDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKK--YGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSA  214 (303)
T ss_pred             cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH
Confidence            431    11      1239999999999999999999999864  56888999999999998887766655  2 21   


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHH
Q 040323          143 -------IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVL  215 (228)
Q Consensus       143 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~  215 (228)
                             |+.+..++..++.++..+...+.++++.||++.+++..++++.++++++++||+++++.+|+|.++++.|..+
T Consensus       215 ~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~  294 (303)
T PF08449_consen  215 IRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL  294 (303)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence                   3456777888888888888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhc
Q 040323          216 YSKVKKRFK  224 (228)
Q Consensus       216 ~~~~k~~~~  224 (228)
                      |+..|+||+
T Consensus       295 ~~~~~~k~~  303 (303)
T PF08449_consen  295 YSYAKKKKN  303 (303)
T ss_pred             HHHhhccCC
Confidence            999998875

; GO: 0055085 transmembrane transport

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.92  E-value=2.8e-22  Score=172.43  Aligned_cols=211  Identities=11%  Similarity=0.069  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHH------hccccchHHHHHHHHHhhhhhhh
Q 040323           10 QKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLL------TCKKEFAEVYYALMPVVLVIVLA   76 (228)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~------~~~~~~~~~~~~~~l~~~G~~l~   76 (228)
                      ++++......|++......+.+.+++|       ++.+++|+++.++++++      +|||.++++++++.++++|+.+.
T Consensus        75 ~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll  154 (358)
T PLN00411         75 VSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVV  154 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHH
Confidence            444555666666553344466777777       88999999999999999      69999999999999999999875


Q ss_pred             cc-CCC-----------------------cch-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCh-HHHHHHhhHHHH
Q 040323           77 SN-NEP-----------------------LFY-LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINF-MNLLVYMAPMAA  130 (228)
Q Consensus        77 ~~-~~~-----------------------~~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~  130 (228)
                      .. ++.                       ..+ ..|+.+.+.++++|+.|++++|+..+    ++++ .....++...+.
T Consensus       155 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~----~~~~~~~~t~~~~~~~~  230 (358)
T PLN00411        155 IFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMS----EYPAAFTVSFLYTVCVS  230 (358)
T ss_pred             HHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCcHhHHHHHHHHHHH
Confidence            42 111                       112 45999999999999999999999853    3433 355556666665


Q ss_pred             HHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 040323          131 SIFLPFTLYIEGI----------FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTV  200 (228)
Q Consensus       131 ~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~  200 (228)
                      ..+.+.....|..          ...+.+++.++.....+..+++++++.+|.++++..+++|+++++.|++++||++++
T Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~  310 (358)
T PLN00411        231 IVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYL  310 (358)
T ss_pred             HHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcH
Confidence            5555444443321          011224444444444455567899999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHhhhhhhc
Q 040323          201 MGMTEFVVTTMIAVLYSKVKKRFK  224 (228)
Q Consensus       201 ~~~~G~~l~~~g~~~~~~~k~~~~  224 (228)
                      .+++|+++++.|+.+.++.|+||.
T Consensus       311 ~~~iG~~LIl~Gv~l~~~~~~~~~  334 (358)
T PLN00411        311 GCLIGGILITLGFYAVMWGKANEE  334 (358)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999988776653

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.92  E-value=2.2e-22  Score=169.52  Aligned_cols=179  Identities=11%  Similarity=-0.003  Sum_probs=138.9

Q ss_pred             HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCC-----------cchHHHHHHHHHHHHHHHHHHHHH
Q 040323           37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEP-----------LFYLLGFLVCIGSTTRRASKYAIQ  105 (228)
Q Consensus        37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~-----------~~~~~G~~~~l~s~~~~a~~~v~~  105 (228)
                      ++.++.|+++.+++++++|||++++++.++.++++|+++...++.           +.+..|+++++.++++|+.|.++.
T Consensus        96 ~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~  175 (295)
T PRK11689         96 MVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVT  175 (295)
T ss_pred             HHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHH
Confidence            677899999999999999999999999999999999998754332           123569999999999999999999


Q ss_pred             HHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 040323          106 QILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG------IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLG  179 (228)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  179 (228)
                      ||..    ++.++.....   ..+...+.+.....+.      ++.+..+++.++.+...+..+++++++.+|.+.+...
T Consensus       176 k~~~----~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~  248 (295)
T PRK11689        176 RKYA----RGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATAS  248 (295)
T ss_pred             hhcc----CCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9983    3456655432   2223333332222221      1234344455555666667778999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          180 NAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       180 ~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                      +++|+++++++++++||++++.+++|+++++.|+....+.+++
T Consensus       249 ~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~  291 (295)
T PRK11689        249 YFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRR  291 (295)
T ss_pred             HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhH
Confidence            9999999999999999999999999999999999877655443

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.90  E-value=3.3e-21  Score=162.21  Aligned_cols=209  Identities=11%  Similarity=-0.041  Sum_probs=158.1

Q ss_pred             ccHHHHHHHHHHHHHH-HHHHHHhHHHH-HH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323            8 LSQKQFLKIFALSAIF-CFSVVCGNTSL-RY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN   78 (228)
Q Consensus         8 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~   78 (228)
                      +++++++.....|.+. .....+.+.+. ++       ++..+.|+++.+++++ +|||+++++++++.++++|+.+...
T Consensus        63 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         63 PTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            3455566666667653 23333444444 22       8889999999999986 6999999999999999999988754


Q ss_pred             C-CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-------HHHHHHHH
Q 040323           79 N-EPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-------IFIVYLLL  150 (228)
Q Consensus        79 ~-~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~  150 (228)
                      + +.+.+..|++++++++++|+.+.+..||..    ++ ++.....++...++..+.+.....+.       .+.+..++
T Consensus       142 ~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  216 (292)
T PRK11272        142 GGNLSGNPWGAILILIASASWAFGSVWSSRLP----LP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALG  216 (292)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHHhcC----CC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHH
Confidence            3 344556899999999999999999999862    22 33445567777777776666543321       12344444


Q ss_pred             HHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          151 GNATIA-YLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       151 ~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                      +.++.+ ...+...++++++.++.+++...+++|+++.+++++++||++|+.+++|+++++.|+...++.++|
T Consensus       217 ~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        217 YLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444443 334445678899999999999999999999999999999999999999999999999998877665

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.89  E-value=1e-20  Score=159.75  Aligned_cols=184  Identities=13%  Similarity=0.123  Sum_probs=139.5

Q ss_pred             HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC---CcchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040323           37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE---PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKA  113 (228)
Q Consensus        37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~  113 (228)
                      ++.++.|+++.+++++++|||+++++++++.++++|+.+...++   .+.+..|+.+++.++++|+.+.+++||..++ .
T Consensus        91 ~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~-~  169 (299)
T PRK11453         91 LVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSH-S  169 (299)
T ss_pred             HHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-c
Confidence            77899999999999999999999999999999999999876432   2335679999999999999999999997421 1


Q ss_pred             ccCChHHHHHHhhHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHH
Q 040323          114 EKINFMNLLVYMAPMAASIFLPFTLYIEG------------IFIVYLLLGNATIAYLVN-LTKFLVRKHTCTLTLQVLGN  180 (228)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~  180 (228)
                      .+.+......++...+...+.......|.            +..++.+++.++.+.... ..+++.+++.+|.+.+...+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~  249 (299)
T PRK11453        170 TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSL  249 (299)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            12233344445554444333332222221            123455555555544433 33457899999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhh
Q 040323          181 AKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKK  221 (228)
Q Consensus       181 ~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~  221 (228)
                      ++|+++.+++++++||++++.+++|+++++.|+.+..+.++
T Consensus       250 l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        250 LVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            99999999999999999999999999999999988766554

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.89  E-value=2e-20  Score=154.48  Aligned_cols=202  Identities=14%  Similarity=0.094  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc-CC
Q 040323           10 QKQFLKIFALSA-IFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN-NE   80 (228)
Q Consensus        10 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~-~~   80 (228)
                      +++++.....+. .+.....+...++++       ++.++.|+++.+++++++|||+++++++++.++++|+.+... ++
T Consensus        43 ~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~  122 (260)
T TIGR00950        43 LKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN  122 (260)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc
Confidence            334444555544 455666667777777       888999999999999999999999999999999999988654 33


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHH
Q 040323           81 PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-----IFIVYLLLGNATI  155 (228)
Q Consensus        81 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~  155 (228)
                      .+.+..|+.+++.++++|+.+.+..|+..+  +.+.++.....+....+.+++.+.....+.     +..+..+...++.
T Consensus       123 ~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (260)
T TIGR00950       123 LSINPAGLLLGLGSGISFALGTVLYKRLVK--KEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLI  200 (260)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhHHhh--cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence            455678999999999999999999999842  222334455546677777777776654332     1233333333433


Q ss_pred             -HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHH
Q 040323          156 -AYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIA  213 (228)
Q Consensus       156 -~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~  213 (228)
                       ....+...++++++.++.+++...+++|+++.+++++++||++++.++.|.++++.|+
T Consensus       201 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       201 GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence             3445555678999999999999999999999999999999999999999999999886

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.8e-21  Score=158.97  Aligned_cols=217  Identities=18%  Similarity=0.262  Sum_probs=190.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCC
Q 040323            9 SQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEP   81 (228)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~   81 (228)
                      .++..|+++|.+++|.+++..+..+++|       ++|..+|+++++.+.+++|.|++++.+.++....+|......+|.
T Consensus        73 ~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~  152 (314)
T KOG1444|consen   73 DLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL  152 (314)
T ss_pred             ChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc
Confidence            4667899999999999999999999998       999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-H------------HHHHH
Q 040323           82 LFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-I------------FIVYL  148 (228)
Q Consensus        82 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~------------~~~~~  148 (228)
                      +++..|+.|++...++.+.+.+..||..+  ..+.+.+++++|.+..+.+.+.....+++. +            .++..
T Consensus       153 sf~~~gY~w~~~n~~~~a~~~v~~kk~vd--~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~  230 (314)
T KOG1444|consen  153 SFNLRGYSWALANCLTTAAFVVYVKKSVD--SANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVV  230 (314)
T ss_pred             eecchhHHHHHHHHHHHHHHHHHHHHhhc--cccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHH
Confidence            99988999999999999999999999876  456899999999999998887776654432 1            24678


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhcccC
Q 040323          149 LLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKIST  227 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~~~~  227 (228)
                      +.++|++++..+++.++|.+..|+++.++++..+...+.+.+.+++|++.++..++|..+.++|.+.|+..++|++.++
T Consensus       231 ~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~  309 (314)
T KOG1444|consen  231 MLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP  309 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence            8999999999999999999999999999999444455555555555788999999999999999999999987776543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.87  E-value=8.7e-20  Score=153.85  Aligned_cols=192  Identities=8%  Similarity=0.035  Sum_probs=141.6

Q ss_pred             HHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCCcchHHHHHHHHH
Q 040323           21 AIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIG   93 (228)
Q Consensus        21 ~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~   93 (228)
                      +.......+.+.++++       ++..+.|+++.+++++++|||++++++.++.++++|+.+...++.+.    ..++++
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~  156 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALG  156 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHH
Confidence            3444456666666666       88899999999999999999999999999999999999875332221    246888


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH----Hh-HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 040323           94 STTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY----IE-GIF-IVYLLLGNATIAYLVNLTKFLVR  167 (228)
Q Consensus        94 s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      ++++|+.|.+..|+..+  ++..+......++.+.+.....+....    .+ .+. .+..+...++.+...+.+.++.+
T Consensus       157 aa~~~a~~~i~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~  234 (296)
T PRK15430        157 LAFSFAFYGLVRKKIAV--EAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAA  234 (296)
T ss_pred             HHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988732  122333444455555555443222110    00 112 22334444445556667788999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323          168 KHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       168 ~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~  218 (228)
                      ++.+|.+.+...+++|+++.++|++++||++++.+++|+++++.|+.+...
T Consensus       235 ~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        235 TRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888877654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.87  E-value=2.3e-20  Score=158.03  Aligned_cols=209  Identities=14%  Similarity=0.107  Sum_probs=171.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC--
Q 040323           10 QKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE--   80 (228)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~--   80 (228)
                      ++++ +-+.++++=..++.+.+.+++|       ++..+.-+++++++++++|+|+++.+++|+++.++|+.+...+|  
T Consensus        77 ~~~w-~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~  155 (334)
T PF06027_consen   77 RPWW-KYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL  155 (334)
T ss_pred             hhHH-HHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence            4444 4566688888888889999998       77778888999999999999999999999999999998864433  


Q ss_pred             -------CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHH---------H
Q 040323           81 -------PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGI---------F  144 (228)
Q Consensus        81 -------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~  144 (228)
                             .+....|+++++.++.+||++++++|+..+    +.+..+.++....++.++..+.....|..         +
T Consensus       156 ~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~----~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~  231 (334)
T PF06027_consen  156 SGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVK----KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQ  231 (334)
T ss_pred             ccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChh
Confidence                   123479999999999999999999999863    46788899999999998888877766653         2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323          145 IVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF  223 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~  223 (228)
                      .....+..+++-+..+...-..++..||+..++...+.+++++++++++||+++++..++|.++++.|...|+..++++
T Consensus       232 ~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~  310 (334)
T PF06027_consen  232 VIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE  310 (334)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence            3334444454445554444567899999999999999999999999999999999999999999999999998765543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.86  E-value=3.1e-19  Score=150.30  Aligned_cols=204  Identities=16%  Similarity=0.057  Sum_probs=148.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc---
Q 040323            9 SQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN---   78 (228)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~---   78 (228)
                      ++++++..+..|+.+.....+...++++       ++..+.|+++.+++    +||+++.+  ++.++++|+.+...   
T Consensus        67 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~~--~~~i~~~Gv~li~~~~~  140 (293)
T PRK10532         67 AKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDFV--WVVLAVLGLWFLLPLGQ  140 (293)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHHH--HHHHHHHHHheeeecCC
Confidence            3455666777777766666666777777       67788999998776    36665444  45677899887542   


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-----HHHHHHHHHHH
Q 040323           79 NEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-----IFIVYLLLGNA  153 (228)
Q Consensus        79 ~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~  153 (228)
                      ++.+.+..|+++++.++++|+.|.+..||..    ++.++... .++...++..+.|.....+.     +..+...+..+
T Consensus       141 ~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~----~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lg  215 (293)
T PRK10532        141 DVSHVDLTGAALALGAGACWAIYILSGQRAG----AEHGPATV-AIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVA  215 (293)
T ss_pred             CcccCChHHHHHHHHHHHHHHHHHHHHHHHh----ccCCchHH-HHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHH
Confidence            2233456799999999999999999999984    23555554 45556666666666554332     11222223344


Q ss_pred             HHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323          154 TIAYL-VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF  223 (228)
Q Consensus       154 ~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~  223 (228)
                      +.+.. .+..+++.+++.+|.++++..+++|+++.+++++++||++++.+++|+++++.|+..+++.++||
T Consensus       216 v~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~  286 (293)
T PRK10532        216 ILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE  286 (293)
T ss_pred             HHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44333 33345788999999999999999999999999999999999999999999999999998776554

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.85  E-value=2.4e-20  Score=151.93  Aligned_cols=213  Identities=17%  Similarity=0.317  Sum_probs=196.0

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC
Q 040323            7 ILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN   79 (228)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~   79 (228)
                      ..+++++|...|.|+.-+..++++|.++.|       +.|+..++|+.+++..|.-||+++.-..-+.++-+|+++.++.
T Consensus        78 ~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K  157 (349)
T KOG1443|consen   78 LSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK  157 (349)
T ss_pred             CcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec
Confidence            357889999999999999999999999999       8999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCChHHHHHHhhHHHHHHHHHHHHHHhHH---------------
Q 040323           80 EPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKA-EKINFMNLLVYMAPMAASIFLPFTLYIEGI---------------  143 (228)
Q Consensus        80 ~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------  143 (228)
                      +.+++..|..+..+++++.+++-.+.+.++++++ .+.+|...+++..+.....++|....+|++               
T Consensus       158 sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~  237 (349)
T KOG1443|consen  158 STQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTG  237 (349)
T ss_pred             ccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCcc
Confidence            9999999999999999999999999999988765 678999999999999999999988887763               


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323          144 ---FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV  219 (228)
Q Consensus       144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~  219 (228)
                         .....+.+.|..+++...+.+....+++..+.|+.+..|.+.+.+.+....+|++|..++.|..++..|+..|...
T Consensus       238 ~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~  316 (349)
T KOG1443|consen  238 LILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNE  316 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccC
Confidence               1234677888899999999999999999999999999999999999999999999999999999999999999443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.84  E-value=3.1e-19  Score=149.43  Aligned_cols=207  Identities=8%  Similarity=-0.044  Sum_probs=143.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC-
Q 040323            9 SQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE-   80 (228)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~-   80 (228)
                      +++.+......+........+.+.++++       .+..+.|+++.+++++++|||+++++++++.+++.|+.+...++ 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~  138 (281)
T TIGR03340        59 PATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF  138 (281)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            3333433344444444555556666666       77788999999999999999999999999999999999865433 


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHh------HH-HHHHHHHHHH
Q 040323           81 PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIE------GI-FIVYLLLGNA  153 (228)
Q Consensus        81 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~-~~~~~~~~~~  153 (228)
                      .+.+..|+.+++.++++|+.|.+..|+..++.+...+......++....+..+.+.....+      .+ ..+..+...+
T Consensus       139 ~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (281)
T TIGR03340       139 AQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGG  218 (281)
T ss_pred             cccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence            3345678889999999999999988875321010112222222222222111111111111      11 1233344555


Q ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHH
Q 040323          154 TIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVL  215 (228)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~  215 (228)
                      +.+...+...++.+++.++.+.+...+++|+++.+.|++++||+++..+++|+++++.|+.+
T Consensus       219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            55555666778899999999999999999999999999999999999999999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.2e-21  Score=157.13  Aligned_cols=216  Identities=19%  Similarity=0.195  Sum_probs=192.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC
Q 040323            8 LSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE   80 (228)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~   80 (228)
                      -+-+..++++|+++.|.+++.++|.|++|       +-|+++-+|+.++.++++|||.+.....++.+++.|--+-..-|
T Consensus        97 ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE  176 (347)
T KOG1442|consen   97 LDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE  176 (347)
T ss_pred             ccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence            34567889999999999999999999999       88999999999999999999999999999999999987765433


Q ss_pred             ---CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH------------HHH
Q 040323           81 ---PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG------------IFI  145 (228)
Q Consensus        81 ---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~  145 (228)
                         ...++.|.+++..|+++-|+..+++||.+.  .....-+.+.+|++..+.++++|.....+.            .++
T Consensus       177 ~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~--~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~F  254 (347)
T KOG1442|consen  177 GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLP--PVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKF  254 (347)
T ss_pred             cccCccchhhhHHHHHHHHHHHHHHHhhheecc--cccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHH
Confidence               456799999999999999999999998753  345677889999999999999998765321            246


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhcc
Q 040323          146 VYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKI  225 (228)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~~  225 (228)
                      |..+.++|+++|..++...+-+|.+||+++++.+..|.+...++++.+++|.-+..-|.|-++++.|...|++.|++|++
T Consensus       255 w~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~  334 (347)
T KOG1442|consen  255 WILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMR  334 (347)
T ss_pred             HHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHH
Confidence            88999999999999998888999999999999999999999999999999999999999999999999999999877644

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.78  E-value=3.1e-16  Score=130.69  Aligned_cols=194  Identities=16%  Similarity=0.102  Sum_probs=145.4

Q ss_pred             HHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHH-HHhccccchHHHHHHHHHhhhhhhhccCCCcc---hHHHHHH
Q 040323           22 IFCFSVVCGNTSLRY-------AVGAATLFFNAISTF-LLTCKKEFAEVYYALMPVVLVIVLASNNEPLF---YLLGFLV   90 (228)
Q Consensus        22 ~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~-l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~~---~~~G~~~   90 (228)
                      .+.........+.++       .+.++.|+++.++++ +++|||++++++.++.+.+.|+.+....+...   +..|+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~  158 (292)
T COG0697          79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLL  158 (292)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHH
Confidence            333344444444554       888999999999997 77799999999999999999999987655433   3589999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccCChHHHHH-HhhHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHH-HHHHHHH
Q 040323           91 CIGSTTRRASKYAIQQILLTSKAEKINFMNLLV-YMAPMAASIFLPFTLYIE----GIFIVYLLLGNATIAY-LVNLTKF  164 (228)
Q Consensus        91 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~  164 (228)
                      ++.++++++++.+..|+..     +.++..... ++.........+......    ....+......++.+. ..+...+
T Consensus       159 ~l~a~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  233 (292)
T COG0697         159 ALAAALLWALYTALVKRLS-----RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWY  233 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999873     345555554 333322222222222111    1123444555555555 3556667


Q ss_pred             HHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323          165 LVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       165 ~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k  220 (228)
                      ...++.++...+...+.+|+.+.+++++++||+++..+++|+.+++.|+...+.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~  289 (292)
T COG0697         234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRA  289 (292)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence            88999999999999999999999999999999999999999999999999988773

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.76  E-value=3.3e-17  Score=124.81  Aligned_cols=132  Identities=33%  Similarity=0.563  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc---cccCChHHHHHHhhHHHHHHHHHHHHHHhHH------------------HH
Q 040323           87 GFLVCIGSTTRRASKYAIQQILLTSK---AEKINFMNLLVYMAPMAASIFLPFTLYIEGI------------------FI  145 (228)
Q Consensus        87 G~~~~l~s~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------~~  145 (228)
                      |..+++.|.++.+++.++.|+.++++   +++.++.++++|+.+.+.++++|..+..|.+                  +.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            67899999999999999999998752   3689999999999999999999988765542                  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323          146 VYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~  218 (228)
                      +..++.+++.+++.|++.+.+++++||+++++.+..|.+..++.|+++|||++|..+++|.++++.|...|++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            5678889999999999999999999999999999999999999999999999999999999999999999974

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.74  E-value=2.3e-17  Score=130.19  Aligned_cols=206  Identities=17%  Similarity=0.123  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC-------
Q 040323           15 KIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE-------   80 (228)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~-------   80 (228)
                      .-...++.|.+.+..+|.+++|       +-+++.|+-+++++.++.+++.+|+++..++.+++|+.+..+.+       
T Consensus        87 ~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e  166 (337)
T KOG1580|consen   87 MYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAE  166 (337)
T ss_pred             HHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCc
Confidence            3566678888999999999999       77899999999999999999999999999999999999987653       


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH----HhH-------HHHHHHH
Q 040323           81 PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY----IEG-------IFIVYLL  149 (228)
Q Consensus        81 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~-------~~~~~~~  149 (228)
                      .+..-.|-++.++|....++-...++|...  ..+-+.-.+|.+++..+.+.+....++    ||.       |..+|-+
T Consensus       167 ~~t~g~GElLL~lSL~mDGlTg~~Qdrira--~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l  244 (337)
T KOG1580|consen  167 DKTFGFGELLLILSLAMDGLTGSIQDRIRA--SYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDL  244 (337)
T ss_pred             ccccchHHHHHHHHHHhcccchhHHHHHHH--hhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHH
Confidence            122347889999999999999999988753  245677888999999998876555443    221       4567878


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          150 LGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                      .+.++.+...+++.+..+...+|++.|++...++.++++.++++|+++++..||+|.++++.|...-....++
T Consensus       245 ~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~  317 (337)
T KOG1580|consen  245 TLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK  317 (337)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence            8888888899999999999999999999999999999999999999999999999999999998876655443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2.5e-15  Score=122.72  Aligned_cols=215  Identities=15%  Similarity=0.133  Sum_probs=182.5

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC
Q 040323            7 ILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN   79 (228)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~   79 (228)
                      .+.++++.+....++....+-.++..++.|       +.|++--+-+++.+.+++|+|+++.+++...++..|+.+....
T Consensus        77 ~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~  156 (327)
T KOG1581|consen   77 LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLF  156 (327)
T ss_pred             CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEe
Confidence            444445556667788888888888999998       7788877778999999999999999999999999999875321


Q ss_pred             ---C------CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHH-----------H
Q 040323           80 ---E------PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTL-----------Y  139 (228)
Q Consensus        80 ---~------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~  139 (228)
                         |      .+.++.|+.++.......++-+..+++..+  .-+++++.+|++++..+++.......           .
T Consensus       157 ~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~--~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~  234 (327)
T KOG1581|consen  157 PNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFK--KYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFI  234 (327)
T ss_pred             cCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhc--cCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHH
Confidence               1      234689999999999999999999999986  46799999999999999887554322           2


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323          140 IEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV  219 (228)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~  219 (228)
                      .|.|++++-+.+.+.++...+...++.+++.+|.+.+.+..++.+++++++.+.||.+++..||.|..+++.|+.+-...
T Consensus       235 ~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~  314 (327)
T KOG1581|consen  235 KEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILL  314 (327)
T ss_pred             HcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHH
Confidence            34467788778888888889988999999999999999999999999999999999999999999999999999887776


Q ss_pred             hhhh
Q 040323          220 KKRF  223 (228)
Q Consensus       220 k~~~  223 (228)
                      |+|+
T Consensus       315 k~~~  318 (327)
T KOG1581|consen  315 KKKK  318 (327)
T ss_pred             HHhc
Confidence            6664

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.70  E-value=1.6e-14  Score=121.42  Aligned_cols=174  Identities=12%  Similarity=0.078  Sum_probs=131.9

Q ss_pred             hHHHHHHHHHHHHHHhccccchHH----HHHHHHHhhhhhhhccCC-C--c----ch-HHHHHHHHHHHHHHHHHHHHHH
Q 040323           39 GAATLFFNAISTFLLTCKKEFAEV----YYALMPVVLVIVLASNNE-P--L----FY-LLGFLVCIGSTTRRASKYAIQQ  106 (228)
Q Consensus        39 ~~~~Pv~~~il~~l~~~~~~~~~~----~~~~~l~~~G~~l~~~~~-~--~----~~-~~G~~~~l~s~~~~a~~~v~~~  106 (228)
                      ..+.|++..+++.+++|||.++++    .+++.++++|+.+....+ .  +    .+ ..|+.++++|+++|+.|.+..|
T Consensus        93 ~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~  172 (290)
T TIGR00776        93 TGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAK  172 (290)
T ss_pred             HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            348888999999999999999999    999999999999865322 1  1    33 6899999999999999999999


Q ss_pred             HHhhcccccCChHHHHHHh---hHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHH
Q 040323          107 ILLTSKAEKINFMNLLVYM---APMAASIFLPFT---LYIEGIFIVYLLLGNATIAYLVNLTKFLVRK-HTCTLTLQVLG  179 (228)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~  179 (228)
                      +.      +.|+.+....+   ...++.+..+..   .... ++..+.....|+.....+..++...+ +.++.+.+++.
T Consensus       173 ~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls  245 (290)
T TIGR00776       173 AF------GVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLK-KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLS  245 (290)
T ss_pred             Hc------CCCcceehhHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHH
Confidence            75      26666663333   333333333322   1111 22233333366665555555667788 99999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcccccch----hHHHHHHHHHHHHHhh
Q 040323          180 NAKAALAAVVLVMIFKNPVTVMGM----TEFVVTTMIAVLYSKV  219 (228)
Q Consensus       180 ~~~~v~~~v~~~~~~ge~~s~~~~----~G~~l~~~g~~~~~~~  219 (228)
                      +.+|+.+.+++++++||+.++.|+    +|+++++.|+.+....
T Consensus       246 ~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       246 QLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999    9999999999876554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.70  E-value=2.2e-16  Score=123.75  Aligned_cols=214  Identities=14%  Similarity=0.201  Sum_probs=187.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCC
Q 040323            9 SQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEP   81 (228)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~   81 (228)
                      |....|++.|.+++....+..+..+++|       +.+.++-+.++..+.+++|.|.+.....+..+.++.-+...++|.
T Consensus        64 R~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~  143 (309)
T COG5070          64 RLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ  143 (309)
T ss_pred             ehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence            3456888999999999999999999999       888999999999999999999999999999999998888888875


Q ss_pred             c--------chHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHH----------
Q 040323           82 L--------FYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGI----------  143 (228)
Q Consensus        82 ~--------~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------  143 (228)
                      +        .+ .|++|+...++..+.+....|+..+  -.+....+.++|.+..+.++++...+..|..          
T Consensus       144 q~~~~~~~~lN-~GY~Wm~~NclssaafVL~mrkri~--ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~  220 (309)
T COG5070         144 QASAFKAQILN-PGYLWMFTNCLSSAAFVLIMRKRIK--LTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLS  220 (309)
T ss_pred             hHHHHHhcccC-CceEEEehhhHhHHHHHHHHHHhhc--ccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCC
Confidence            3        34 6999999999999999999988754  2346677889999999999988888776641          


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          144 -FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                       +....+..+|++++...++.-|+.+.++.++.|+++.+++....+.|.++|||+.+.+.+....+-.+....|...|++
T Consensus       221 ~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~  300 (309)
T COG5070         221 VDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSK  300 (309)
T ss_pred             hHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3456788899999999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             hcc
Q 040323          223 FKI  225 (228)
Q Consensus       223 ~~~  225 (228)
                      ++.
T Consensus       301 k~q  303 (309)
T COG5070         301 KQQ  303 (309)
T ss_pred             HHh
Confidence            544

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.68  E-value=1.4e-15  Score=127.37  Aligned_cols=210  Identities=12%  Similarity=0.111  Sum_probs=172.5

Q ss_pred             HHHHHHHHHHHHHHH----HHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC
Q 040323           11 KQFLKIFALSAIFCF----SVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN   79 (228)
Q Consensus        11 ~~~~~~~~~~~~~~~----~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~   79 (228)
                      ...++....+++||.    .....|.++.+       ++-++.-+|+..++.++..||+++.+.+++++.+.|+++...+
T Consensus       153 ~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~  232 (416)
T KOG2765|consen  153 LTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG  232 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence            345566777777775    55556666666       7778899999999999999999999999999999999998655


Q ss_pred             C--------CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH--------H
Q 040323           80 E--------PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG--------I  143 (228)
Q Consensus        80 ~--------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~  143 (228)
                      |        .+....|+++++++++.||+|.++.||..++.+++.|--.+.++...+..+++.|...+.+.        |
T Consensus       233 ~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP  312 (416)
T KOG2765|consen  233 DSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELP  312 (416)
T ss_pred             cccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCC
Confidence            2        23348999999999999999999999987654468899999999999998888877665332        1


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323          144 ---FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k  220 (228)
                         ++...+.-+.+..+...+.+.++.-.++|+++++...++...+++...++-|.++|+.+++|.+.++.|....|+..
T Consensus       313 ~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  313 SSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             CCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence               22334444455566677878788889999999999999999999999999999999999999999999999988754

>TIGR00688 rarD rarD protein

Probab=99.67  E-value=3e-14  Score=117.66  Aligned_cols=168  Identities=8%  Similarity=-0.050  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCCcchHHHH
Q 040323           16 IFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGF   88 (228)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~   88 (228)
                      ....+++......+...++++       ++..++|+++++++++++|||+++++++++.++++|+.+...++.+.+    
T Consensus        73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----  148 (256)
T TIGR00688        73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----  148 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----
Confidence            444555555555666666666       788999999999999999999999999999999999998754322222    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHH
Q 040323           89 LVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIE--------GIFIVYLLLGNATIAYLVN  160 (228)
Q Consensus        89 ~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  160 (228)
                      .+++.++++|+.|.+..|+..+     .+..+..... ........+.....+        .+..|..++..++.+...+
T Consensus       149 ~~~l~aa~~~a~~~i~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~  222 (256)
T TIGR00688       149 WEALVLAFSFTAYGLIRKALKN-----TDLAGFCLET-LSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPL  222 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCC-----CCcchHHHHH-HHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHH
Confidence            3578899999999999998731     1222222211 111111111111111        1123445555556666677


Q ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q 040323          161 LTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMI  193 (228)
Q Consensus       161 ~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~  193 (228)
                      ...+..+++.+|.+++...+++|+++.+++++.
T Consensus       223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            778899999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.58  E-value=1.5e-12  Score=106.37  Aligned_cols=178  Identities=13%  Similarity=0.052  Sum_probs=138.5

Q ss_pred             hHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCh
Q 040323           39 GAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINF  118 (228)
Q Consensus        39 ~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~  118 (228)
                      -...|++..+++++|+|||.++.|++++.++.+|+..-.....+.++..    +.=+++|+.|...-|+.      ++|+
T Consensus       105 Y~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwva----l~la~sf~~Ygl~RK~~------~v~a  174 (293)
T COG2962         105 YFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVA----LALALSFGLYGLLRKKL------KVDA  174 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHH----HHHHHHHHHHHHHHHhc------CCch
Confidence            3668999999999999999999999999999999998776666666543    33456889998887664      5777


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 040323          119 MNLLVYMAPMAASIFLPFTLYIE---------GIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVV  189 (228)
Q Consensus       119 ~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~  189 (228)
                      .+-.......-.+..+......+         .+..+.++++.|.++..-=.......|+.+=.+.++..|.+|....++
T Consensus       175 ~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fll  254 (293)
T COG2962         175 LTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLL  254 (293)
T ss_pred             HHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            66665555444433333322222         123567778888777665455557788999999999999999999999


Q ss_pred             HHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhccc
Q 040323          190 LVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFKIS  226 (228)
Q Consensus       190 ~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~~~  226 (228)
                      +++++||+++..+....+++-+|...|..+..+++.+
T Consensus       255 av~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~  291 (293)
T COG2962         255 AVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK  291 (293)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999877655443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.58  E-value=8.7e-13  Score=108.00  Aligned_cols=192  Identities=18%  Similarity=0.186  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC---
Q 040323           11 KQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE---   80 (228)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~---   80 (228)
                      +...+...-+++|...+-....++++       +++.+..+++++++++++|+|.+++||.++.+.+.|+.+...++   
T Consensus        15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            33445555588899988888888888       88899999999999999999999999999999999999853211   


Q ss_pred             ------C--------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH----
Q 040323           81 ------P--------LFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG----  142 (228)
Q Consensus        81 ------~--------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  142 (228)
                            .        +....|+...+.++++.++..++.+|.+|++  +.+.+.-.......+.++.++.....+.    
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~--~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~  172 (244)
T PF04142_consen   95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS--NVSLWIQNMQLYLFGILFNLLALLLSDGSAIS  172 (244)
T ss_pred             cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence                  0        1236899999999999999999999999753  3555555444455555554444333221    


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHH
Q 040323          143 ---------IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVV  208 (228)
Q Consensus       143 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l  208 (228)
                               +..|..+...++.+...    -..+|+.|...-+.......+++.+.++.+||.++|....+|..+
T Consensus       173 ~~g~f~G~~~~~~~~i~~~a~gGllv----a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  173 ESGFFHGYSWWVWIVIFLQAIGGLLV----AFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             cCCchhhcchHHHHHHHHHHHhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence                     12344445555444444    345899999999999999999999999999999999999999765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.57  E-value=8e-13  Score=105.63  Aligned_cols=213  Identities=16%  Similarity=0.080  Sum_probs=155.9

Q ss_pred             CcccccccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhh
Q 040323            2 SRLKTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIV   74 (228)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~   74 (228)
                      ||..+.-.+++++.+...|...++++...+.++..       .+-.+-|+.+..    +..+|.  +..+-+.+.+.|+.
T Consensus        60 RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~----~~sRr~--~d~vwvaLAvlGi~  133 (292)
T COG5006          60 RPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVAL----LSSRRL--RDFVWVALAVLGIW  133 (292)
T ss_pred             hHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHH----Hhccch--hhHHHHHHHHHHHH
Confidence            45554555566777777777777777777777776       566778876543    334444  34444556778887


Q ss_pred             hhccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-----HHHH
Q 040323           75 LASNN---EPLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-----IFIV  146 (228)
Q Consensus        75 l~~~~---~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~  146 (228)
                      +....   ..+.|+.|..+++.+..+|+.|.+..||.    ....+...-+..-+.+++++.+|+......     |...
T Consensus       134 lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~----g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll  209 (292)
T COG5006         134 LLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRA----GRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLL  209 (292)
T ss_pred             hheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchh----cccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHH
Confidence            75432   25678999999999999999999999987    334566666667777888888887764322     3344


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhc
Q 040323          147 YLLLGNATIAYLVNLT-KFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFK  224 (228)
Q Consensus       147 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~  224 (228)
                      ...+..++++....|+ -..+++|.++-++++..++||.++.+.|++++||.+|..||.|++.++.+....++..+|+.
T Consensus       210 ~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~  288 (292)
T COG5006         210 PLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA  288 (292)
T ss_pred             HHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence            4444445555444443 35679999999999999999999999999999999999999999999999988777655543

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.57  E-value=3.8e-14  Score=114.18  Aligned_cols=214  Identities=15%  Similarity=0.110  Sum_probs=175.2

Q ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323            5 KTILSQKQFLKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS   77 (228)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~   77 (228)
                      |..++..++|.-..++.+..+.+..+|-|+.|       +.+.+.-+-+++.+.++.++|..+..+++..+.++|+.+.+
T Consensus        98 ~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FT  177 (367)
T KOG1582|consen   98 QTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFT  177 (367)
T ss_pred             cccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhh
Confidence            34456667888888999999999999999988       88888888889999999999999999999999999999987


Q ss_pred             cCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH-Hh----------H
Q 040323           78 NNE----PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY-IE----------G  142 (228)
Q Consensus        78 ~~~----~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----------~  142 (228)
                      ..|    +++|..|+.+.-++.++.|.-...+++.++.  .+-+..++++|.-.++.+.++..... .|          .
T Consensus       178 LADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~--~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaeh  255 (367)
T KOG1582|consen  178 LADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKM--NPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEH  255 (367)
T ss_pred             hcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhh--CCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhC
Confidence            654    5678899999999999999999999988764  34566777777777776655433322 22          1


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323          143 IF-IVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       143 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k  220 (228)
                      |. .....++-+..++....+....++..+|.+...+...++..++++|+++|..|+|.+...|..++..|+++--..|
T Consensus       256 p~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  256 PVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             cHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            22 3445555566677766666778999999999999999999999999999999999999999999999998765544

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.56  E-value=8.5e-15  Score=118.13  Aligned_cols=210  Identities=16%  Similarity=0.193  Sum_probs=166.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc--
Q 040323            9 SQKQFLKIFALSAIFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN--   78 (228)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~--   78 (228)
                      ++.+.|.....-..|......+|.++.+        +.|+-.++.+++.++++.|+|.+.+|+.++++..+|+.+.+.  
T Consensus        60 ~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s  139 (330)
T KOG1583|consen   60 PKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFS  139 (330)
T ss_pred             CCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeec
Confidence            3334444444455566677778888888        889999999999999999999999999999999999998432  


Q ss_pred             -CCCc------------ch----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHH--H
Q 040323           79 -NEPL------------FY----LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTL--Y  139 (228)
Q Consensus        79 -~~~~------------~~----~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~  139 (228)
                       .|..            .+    ..|+.+...+.+..|.-.++++...++++  -++.|.++|....+.+.++...-  .
T Consensus       140 ~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG--Kh~~EalFytH~LsLP~Flf~~~div  217 (330)
T KOG1583|consen  140 SKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG--KHWKEALFYTHFLSLPLFLFMGDDIV  217 (330)
T ss_pred             CcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHhccchHHHhcchHH
Confidence             2210            11    36777777788888888888888766444  47889999999888666544321  0


Q ss_pred             --------HhH----------HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 040323          140 --------IEG----------IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVM  201 (228)
Q Consensus       140 --------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~  201 (228)
                              .|.          |..|+.+.++++..+.+.-..+.+..++++++++++-.+++.++.+.|+..|+++++++
T Consensus       218 ~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~  297 (330)
T KOG1583|consen  218 SHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW  297 (330)
T ss_pred             HHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH
Confidence                    110          34688899999888887776677778999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHhhh
Q 040323          202 GMTEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       202 ~~~G~~l~~~g~~~~~~~k  220 (228)
                      +|+|.++++.|...|+...
T Consensus       298 h~lGa~lVF~Gt~~fa~~~  316 (330)
T KOG1583|consen  298 HWLGAALVFFGTLLFANVW  316 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999997543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.49  E-value=2.9e-14  Score=114.64  Aligned_cols=194  Identities=13%  Similarity=0.057  Sum_probs=150.5

Q ss_pred             HHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc-----cCCC---------cch
Q 040323           26 SVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS-----NNEP---------LFY   84 (228)
Q Consensus        26 ~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~-----~~~~---------~~~   84 (228)
                      +.....++++|       ++...+|+++.+++|.++|||+++...++..+.+.|++++.     .+|.         +.+
T Consensus       110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~  189 (346)
T KOG4510|consen  110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYD  189 (346)
T ss_pred             HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccccc
Confidence            44445566666       77799999999999999999999999999999999999853     2221         234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHH-HHh--HH---HHHHHHHHHHHHHHH
Q 040323           85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTL-YIE--GI---FIVYLLLGNATIAYL  158 (228)
Q Consensus        85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~---~~~~~~~~~~~~~~~  158 (228)
                      ..|...++.+.+..|.-.++.|+.    +++.+....+.|-..++.+..+.... ..+  .|   ..+++.+..|+.++.
T Consensus       190 ~~gt~aai~s~lf~asvyIilR~i----Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfi  265 (346)
T KOG4510|consen  190 IPGTVAAISSVLFGASVYIILRYI----GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFI  265 (346)
T ss_pred             CCchHHHHHhHhhhhhHHHHHHHh----hccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhH
Confidence            578888888888888777788777    45666666666666666555443322 122  22   346677777888999


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323          159 VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF  223 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~  223 (228)
                      .+......+++-.|-..++..+..-+++.++.+++|||.++++.|.|+++++...++....|..+
T Consensus       266 gQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~  330 (346)
T KOG4510|consen  266 GQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG  330 (346)
T ss_pred             HHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence            98888888888777788999999999999999999999999999999999999988877666544

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.36  E-value=5.2e-10  Score=93.97  Aligned_cols=204  Identities=16%  Similarity=0.119  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc---cC--C-
Q 040323           14 LKIFALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS---NN--E-   80 (228)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~---~~--~-   80 (228)
                      .+...-++.|..-+-...+++.+       +...+.-+.++++.+++++||.+++||.++.+...|+.+.-   .+  + 
T Consensus        93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a  172 (345)
T KOG2234|consen   93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA  172 (345)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence            34444467777755455555555       56677788899999999999999999999999999999864   11  1 


Q ss_pred             -----CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH------------H
Q 040323           81 -----PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG------------I  143 (228)
Q Consensus        81 -----~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~  143 (228)
                           .+..+.|....+.+++..++..++.+|.+++  .+.+.+.-.--...++.++.+......+.            +
T Consensus       173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~--s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s  250 (345)
T KOG2234|consen  173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKG--SNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYS  250 (345)
T ss_pred             cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCcccccc
Confidence                 2234799999999999999999999999864  34444444333334444443332221111            1


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          144 -FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                       ..|..++..++.|.+..+    .+|+.|...-........+++.+.++.+||-++|....+|..+++.++..|+..+.+
T Consensus       251 ~~vw~vVl~~a~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~  326 (345)
T KOG2234|consen  251 SIVWLVVLLNAVGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR  326 (345)
T ss_pred             HHHHHHHHHHhccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence             235566666666665543    478888888888888899999999999999999999999999999999999977665


Q ss_pred             h
Q 040323          223 F  223 (228)
Q Consensus       223 ~  223 (228)
                      +
T Consensus       327 ~  327 (345)
T KOG2234|consen  327 D  327 (345)
T ss_pred             c
Confidence            4

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.35  E-value=6.4e-11  Score=96.16  Aligned_cols=180  Identities=13%  Similarity=0.157  Sum_probs=146.2

Q ss_pred             HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC----------CcchHHHHHHHHHHHHHHHHHHHHHH
Q 040323           37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE----------PLFYLLGFLVCIGSTTRRASKYAIQQ  106 (228)
Q Consensus        37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~----------~~~~~~G~~~~l~s~~~~a~~~v~~~  106 (228)
                      ++|...-+|+.+++.-+++++.+.+||+++..++.|++.....|          -+.-..|+++.+.+.+.-|.+.++.+
T Consensus       117 MlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Ee  196 (372)
T KOG3912|consen  117 MLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEE  196 (372)
T ss_pred             HhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999864432          12236899999999999999999999


Q ss_pred             HHhhcccccCChHHHHHHhhHHHHHHHHHHHH----HHhH------H------------------HHHHHHHHHHHHHHH
Q 040323          107 ILLTSKAEKINFMNLLVYMAPMAASIFLPFTL----YIEG------I------------------FIVYLLLGNATIAYL  158 (228)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~------~------------------~~~~~~~~~~~~~~~  158 (228)
                      |.+++  .+.+|.+..+|+..++.+++-....    ...+      +                  .....+....+...+
T Consensus       197 k~l~~--~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAf  274 (372)
T KOG3912|consen  197 KQLKK--SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAF  274 (372)
T ss_pred             hhhhh--ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheee
Confidence            99864  5699999999999999655432221    1111      0                  112222333334445


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323          159 VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~  218 (228)
                      .|+......|..|+++-.+....+.....+.+.....|.+...|+.|.++.+.|+..||-
T Consensus       275 fNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~  334 (372)
T KOG3912|consen  275 FNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ  334 (372)
T ss_pred             eeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888889999999999999999999999999999999999999999999999999973

>TIGR00803 nst UDP-galactose transporter

Probab=99.16  E-value=4.2e-10  Score=91.05  Aligned_cols=170  Identities=12%  Similarity=0.035  Sum_probs=117.4

Q ss_pred             HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC--------------------C-------CcchHHHHH
Q 040323           37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN--------------------E-------PLFYLLGFL   89 (228)
Q Consensus        37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~--------------------~-------~~~~~~G~~   89 (228)
                      ..+...|+++++.++.+.+||.+..++++.++...|+.....+                    +       .+....|..
T Consensus         9 ~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g~~   88 (222)
T TIGR00803         9 IFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGLS   88 (222)
T ss_pred             HHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHHHH
Confidence            5678888899999999999998899999999988888742111                    1       122356777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHH-HH---HhH-------------HHHHHHHHHH
Q 040323           90 VCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFT-LY---IEG-------------IFIVYLLLGN  152 (228)
Q Consensus        90 ~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~---~~~-------------~~~~~~~~~~  152 (228)
                      ..+.+..+.++..+++++..+.+  +..     .|....+...+.+.. ..   .+.             +...+.+++.
T Consensus        89 ~~l~a~~~~~~~~~y~e~~~k~~--~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (222)
T TIGR00803        89 AVLSALLSSGFAGVYFEKILKDG--DTM-----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL  161 (222)
T ss_pred             HHHHHHHHHhhhHHHHHHcccCC--CCc-----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence            78888888888999999875422  122     333333322222211 11   100             1222333222


Q ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHH
Q 040323          153 ATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLY  216 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~  216 (228)
                      .   ...+.+..+++|+.|+.+.++....+++.+.++++++|||+++..++.|..+++.|+..|
T Consensus       162 ~---a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       162 N---VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             H---HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            2   222233567799999999999999999999999999999999999999999999987654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.12  E-value=7.6e-10  Score=80.64  Aligned_cols=117  Identities=17%  Similarity=0.117  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHH-HHHHHHHHHHHH
Q 040323           96 TRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-------IFIVYLLLGNATI-AYLVNLTKFLVR  167 (228)
Q Consensus        96 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~  167 (228)
                      ++|+.+.+..|+..    ++.|+.....+....+.+ +++.....+.       ++.+......+.+ ....+...+.+.
T Consensus         1 ~~~a~~~~~~k~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLL----KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHh----ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence            35788899999885    349999999999998886 5555544332       1223333333444 455666778899


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          168 KHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       168 ~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      ++.++...+...+++|+++.+++++++||+++..+++|+++++.|+.+.+
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.09  E-value=6e-10  Score=80.33  Aligned_cols=127  Identities=13%  Similarity=0.041  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHH
Q 040323           87 GFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG--------IFIVYLLLGNATIAYL  158 (228)
Q Consensus        87 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~  158 (228)
                      -.+++++|++.+++-.++.|-.++    +.||......-......++.........        +..|..++++|+.+..
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~----~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gl   79 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE----GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGL   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc----ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHH
Confidence            357899999999999999998763    4677666665555555555444443221        2457788999988888


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          159 VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      ..+++|+++|.=.+..+..+.-+.++++++++++++||++|..+++|++++.+|.++..
T Consensus        80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            88899999999888888899999999999999999999999999999999999987543

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.07  E-value=1.8e-10  Score=92.47  Aligned_cols=177  Identities=12%  Similarity=0.097  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC--------CcchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040323           40 AATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE--------PLFYLLGFLVCIGSTTRRASKYAIQQILLTS  111 (228)
Q Consensus        40 ~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~--------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~  111 (228)
                      .-.|. +.+++|+++|.|.++.++.|+.+...|+++...+|        .+....|+.+.+.++-+||..++.++...  
T Consensus       113 waip~-v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflv--  189 (336)
T KOG2766|consen  113 WAIPC-VLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV--  189 (336)
T ss_pred             hhhHH-HHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHH--
Confidence            33565 56999999999999999999999999999864433        22336899999999999999999999884  


Q ss_pred             ccccCChHHHHHHhhHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040323          112 KAEKINFMNLLVYMAPMAASIFLPFTLYIEGI--------FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKA  183 (228)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  183 (228)
                        ++.+..+++.....+++++..+- +..|..        +.........++-|+..-..-..+|..|++.+++.-...+
T Consensus       190 --kn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsD  266 (336)
T KOG2766|consen  190 --KNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSD  266 (336)
T ss_pred             --hcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHH
Confidence              56899999999999998887766 444431        1122222233333333333346788999999999999999


Q ss_pred             HHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhc
Q 040323          184 ALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFK  224 (228)
Q Consensus       184 v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~  224 (228)
                      .+++++  ..||-+++|...+..+.+..|.+.|..+++.++
T Consensus       267 mwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~  305 (336)
T KOG2766|consen  267 MWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEE  305 (336)
T ss_pred             HHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCcH
Confidence            999998  778888999999999999999999976655443

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.06  E-value=1.8e-08  Score=85.08  Aligned_cols=131  Identities=8%  Similarity=-0.053  Sum_probs=103.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH----------HHHHHHHHH
Q 040323           82 LFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG----------IFIVYLLLG  151 (228)
Q Consensus        82 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~  151 (228)
                      +....|+++.+++++.|+...+..|..     .+.++.+...+...++.+++++.......          +..+.....
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-----~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLI-----YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAV   78 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHH
Confidence            344689999999999999999999764     35899999999999988777665433210          111222334


Q ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          152 NATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      .+......+.+.++.++++++...++..++.|++..+.+++++||+++..+++|.++.+.|+....
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            444444456677899999999999999999999999999999999999999999999999997654

>TIGR00688 rarD rarD protein

Probab=98.97  E-value=4.8e-08  Score=80.62  Aligned_cols=127  Identities=9%  Similarity=0.031  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHh-------H------HHHHHHHHHH
Q 040323           86 LGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIE-------G------IFIVYLLLGN  152 (228)
Q Consensus        86 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~------~~~~~~~~~~  152 (228)
                      .|..+.+.++++|+...+..|..     .+.++.+...+-..++.+++++......       .      .+.+..+...
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-----~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-----KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLC   76 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHH
Confidence            48889999999999999999974     2499999999999988877666543211       0      1123345555


Q ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          153 ATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      ++.....+.+.++.++++++.++++..+..|+++.+++++++||+++..+++|..+.+.|+.+..
T Consensus        77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            65555566677889999999999999999999999999999999999999999999999987653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.91  E-value=6.3e-08  Score=81.08  Aligned_cols=125  Identities=12%  Similarity=0.075  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHH------hH--HHHHHHHHHHHHHHHHH
Q 040323           88 FLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYI------EG--IFIVYLLLGNATIAYLV  159 (228)
Q Consensus        88 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~--~~~~~~~~~~~~~~~~~  159 (228)
                      ..+.++++++++.+.+..|+..+    +.++.  ..+....+++.+.|.....      ..  .+.+...+..+......
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~----~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHAD----KEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVY   76 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCC----chhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHH
Confidence            46789999999999999997742    23333  3444555666666655432      11  12344555666666667


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323          160 NLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~  218 (228)
                      +.+.+...++.++...+.+.+..|+++.+++++++||+++..+++|.++.+.|+.....
T Consensus        77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            77778889999999999999999999999999999999999999999999999987654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.82  E-value=2.9e-06  Score=69.98  Aligned_cols=195  Identities=13%  Similarity=0.054  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHH----HHHHHHhhhhhhhccCC
Q 040323           13 FLKIFALSAIFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVY----YALMPVVLVIVLASNNE   80 (228)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~----~~~~l~~~G~~l~~~~~   80 (228)
                      +.--+..|++.+.+...+..++++        +-..+.-+.+.+.+.++++|..+..++    +|+++.++|+.+....|
T Consensus        45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~  124 (269)
T PF06800_consen   45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD  124 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence            334455567777777777777777        556778888999999999998876665    48889999999875433


Q ss_pred             C--------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH-HhH---HHHHHH
Q 040323           81 P--------LFYLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY-IEG---IFIVYL  148 (228)
Q Consensus        81 ~--------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~---~~~~~~  148 (228)
                      .        +....|....+.+.+.|..|.+..|..      +.|++....=|.+ +..+....... .+.   ....+.
T Consensus       125 ~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~------~~~~~~~~lPqai-Gm~i~a~i~~~~~~~~~~~k~~~~  197 (269)
T PF06800_consen  125 KKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF------HVSGWSAFLPQAI-GMLIGAFIFNLFSKKPFFEKKSWK  197 (269)
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc------CCChhHhHHHHHH-HHHHHHHHHhhcccccccccchHH
Confidence            1        123568999999999999999998764      4677777654432 22222111111 111   122344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccccc----chhHHHHHHHHHH
Q 040323          149 LLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVM----GMTEFVVTTMIAV  214 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~----~~~G~~l~~~g~~  214 (228)
                      -+..|++=...|.+++...++.+..+.=.++.+..+++.+.|.+++||.=+..    .++|.++++.|.+
T Consensus       198 nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  198 NILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             hhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            45556665667777788899999999999999999999999999999998766    4568887877765

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.71  E-value=1.4e-06  Score=75.50  Aligned_cols=130  Identities=12%  Similarity=0.155  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH----H----HHHHHHHHHHHHHH
Q 040323           86 LGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG----I----FIVYLLLGNATIAY  157 (228)
Q Consensus        86 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~----~~~~~~~~~~~~~~  157 (228)
                      .-...++...++|+.+.++.|..++   ...++..+..+-..+++++++|.....+.    +    ..+..+...++.++
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~---~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~   89 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATS---KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS   89 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH---CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            3457788888999999999999884   46899999999999998888887654332    1    12334444555554


Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH------hcCcccccchhHHHHHHHHHHHHHh
Q 040323          158 LVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMI------FKNPVTVMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~------~ge~~s~~~~~G~~l~~~g~~~~~~  218 (228)
                      ..+...+..+++++|...+++.++.|+++.++++++      ++|+++..+++|.++.+.|+.+...
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            455566788999999999999999999999999999      6999999999999999999987654

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.61  E-value=3.2e-06  Score=62.47  Aligned_cols=124  Identities=11%  Similarity=-0.008  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040323           86 LGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFL  165 (228)
Q Consensus        86 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      .|+++.+.+.++.+...++.|+-+++.+ +.+...   . . ....   .  ...++....+..+.....   ..+.+..
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~---~-~-~~~~---~--~~~~p~~~i~lgl~~~~l---a~~~w~~   67 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAW---D-F-IAAL---L--AFGLALRAVLLGLAGYAL---SMLCWLK   67 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCC-Cccchh---H-H-HHHH---H--HHhccHHHHHHHHHHHHH---HHHHHHH
Confidence            3788899999999999999998765321 111111   0 0 0000   0  011211112222222222   2233557


Q ss_pred             HHhccchhHHHHHHHHHHHHHHHHHHH--HhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323          166 VRKHTCTLTLQVLGNAKAALAAVVLVM--IFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF  223 (228)
Q Consensus       166 ~~~~~~~~~~s~~~~~~~v~~~v~~~~--~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~  223 (228)
                      ++++.+...+..+-...++...+.++.  +|||++|+.+++|.+++++|+...+..++|+
T Consensus        68 aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~  127 (129)
T PRK02971         68 ALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKA  127 (129)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence            799999999988888888778777875  8999999999999999999999988766554

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.53  E-value=6.7e-07  Score=64.60  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHH-HHHHHhHHHHHH------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCCCc
Q 040323           13 FLKIFALSAIFC-FSVVCGNTSLRY------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNEPL   82 (228)
Q Consensus        13 ~~~~~~~~~~~~-~~~~~~~~~l~~------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~~~   82 (228)
                      +..+...++... ........+.++      .+.++.|+++.+++++++|||++++++.++.++++|+.++..+|.+
T Consensus        34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   34 WLWLILAGLLGFGVAYLLFFYALSYAPALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            333444444433 445555555555      8889999999999999999999999999999999999998776644

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.42  E-value=2.1e-05  Score=67.94  Aligned_cols=130  Identities=8%  Similarity=-0.036  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC-hHHHHHHhhHHHHHHHHHHHHHHh--------HHHHHHHHHHHHH
Q 040323           84 YLLGFLVCIGSTTRRASKYAIQQILLTSKAEKIN-FMNLLVYMAPMAASIFLPFTLYIE--------GIFIVYLLLGNAT  154 (228)
Q Consensus        84 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~  154 (228)
                      ++.-..+.+..-.+...+++..|..++    ..+ |+.+..++...+.+.+.+......        .+..+..++..++
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~----~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl  122 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALN----MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGL  122 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence            445556666677777778888888874    367 999999999888766544433211        1224445666666


Q ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          155 IAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      ++...+...+..++++++..++++-.++|++++++++++++|+++..++.|.+++++|+.+..
T Consensus       123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            666666666788999999999999999999999999999999999999999999999998754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.41  E-value=6.8e-06  Score=67.63  Aligned_cols=115  Identities=14%  Similarity=0.024  Sum_probs=86.5

Q ss_pred             HHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 040323          101 KYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGI-FIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLG  179 (228)
Q Consensus       101 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  179 (228)
                      ..+..|..++   ...++.+...+....+.+.+.+........ +..+....+++.....+...+..++++++...+++.
T Consensus         4 ~~~~~k~~~~---~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~   80 (260)
T TIGR00950         4 TGVVIGQYLE---GQVPLYFAVFRRLIFALLLLLPLLRRRPPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLL   80 (260)
T ss_pred             hHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHhccCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHH
Confidence            3445566542   357888888888888877776654332122 233444444444455556677899999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323          180 NAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       180 ~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~  218 (228)
                      .++|+++.+++++++||++++.+++|..+.+.|+.....
T Consensus        81 ~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        81 YLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             hhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            999999999999999999999999999999999887643

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.39  E-value=2.3e-05  Score=64.64  Aligned_cols=131  Identities=9%  Similarity=0.020  Sum_probs=103.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH----------HHHHHHHHHHH
Q 040323           84 YLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG----------IFIVYLLLGNA  153 (228)
Q Consensus        84 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~  153 (228)
                      +..|++.++.+.+.|+.--.+.|-.     ++.++.+...+-.+.+...++........          |..+.....++
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-----~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a   79 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-----EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTA   79 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHH
Confidence            4579999999999999999999877     57999999999999888777665544321          22233333333


Q ss_pred             HHHHHHHHHHH-HHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323          154 TIAYLVNLTKF-LVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       154 ~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k  220 (228)
                       .-...|+..| ++..+-...++|+-.+++|.+.+++|.+++||++|..|++..++..+|+..-.+..
T Consensus        80 -~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          80 -LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             -HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence             3334565554 77888889999999999999999999999999999999999999999998766553

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.35  E-value=1.7e-05  Score=66.96  Aligned_cols=128  Identities=7%  Similarity=-0.002  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHH
Q 040323           86 LGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGI-FIVYLLLGNATIAYLVNLTKF  164 (228)
Q Consensus        86 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  164 (228)
                      .+++.++.+.+.|+......|...    +.++|..+..+-...+++++.+.......+ +.+...+..++.....+...+
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~----~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   79 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVS----ESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLA   79 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHH----ccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHH
Confidence            456788899999999999999875    358999999988888877766543111111 112222333332222222223


Q ss_pred             HHH----hccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          165 LVR----KHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       165 ~~~----~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      ...    +..++...+++.++.|+++.++++++++|++++.+++|+++.+.|+.+..
T Consensus        80 ~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         80 LSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL  136 (295)
T ss_pred             HHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence            333    45788888999999999999999999999999999999999999987664

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.29  E-value=6.9e-05  Score=63.09  Aligned_cols=126  Identities=11%  Similarity=-0.021  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHH-HHHHH
Q 040323           88 FLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG----IFIVYLLLGNATIAY-LVNLT  162 (228)
Q Consensus        88 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~  162 (228)
                      +...+.-.+.|+...+..|...    ++.+|.+...+-...+++++++.......    .+.+......|.... ..+..
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~----~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   85 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGV----ESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGM   85 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667789999999999764    36999999999999988887776543221    122333333443332 22334


Q ss_pred             HHHHH-hccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323          163 KFLVR-KHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       163 ~~~~~-~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~  218 (228)
                      .+... ++.++...++..++.|+++.+++.+ +||+++..+++|.++.+.|+.+...
T Consensus        86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            45556 8889999999999999999999985 7999999999999999999987754

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.26  E-value=5.4e-05  Score=63.93  Aligned_cols=125  Identities=10%  Similarity=0.037  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 040323           88 FLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNL-TKFLV  166 (228)
Q Consensus        88 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  166 (228)
                      .+..+++++.|+...+..|...    ++.+|.....+-..++++.+++... .+..+ +......+......++ ..+..
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~----~~~~p~~~~~~R~~~a~~~l~~~~~-~~~~~-~~~~~~~g~~~~~~~~~~~~~~   79 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGL----HNMPPLMLAGLRFMLVAFPAIFFVA-RPKVP-LNLLLGYGLTISFGQFAFLFCA   79 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHhc-CCCCc-hHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888999999999998775    3589999999888777655544321 11111 1122222333222222 33455


Q ss_pred             Hhc-cchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323          167 RKH-TCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       167 ~~~-~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~  218 (228)
                      .++ .++...+++.++.|+++.++++++++|+++..+++|.++.+.|+.....
T Consensus        80 ~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         80 INFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            665 5778889999999999999999999999999999999999999877653

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.24  E-value=4.1e-06  Score=65.31  Aligned_cols=185  Identities=11%  Similarity=0.052  Sum_probs=123.6

Q ss_pred             HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040323           37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNNE--PLFYLLGFLVCIGSTTRRASKYAIQQILLTSKAE  114 (228)
Q Consensus        37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~~--~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~  114 (228)
                      .+.++.-.|+.+++++++|+|+..-++++..+++.|++++.+.|  ...++.|+..+..|+...++|-+.-|+.+.+.+ 
T Consensus        84 ai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn-  162 (290)
T KOG4314|consen   84 AIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNAN-  162 (290)
T ss_pred             HHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCc-
Confidence            66678888999999999999999999999999999999988655  445689999999999999999999999874311 


Q ss_pred             cCChHHHHHHhhHHHHH-HHHHH-HHHH---hHHH-H----HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040323          115 KINFMNLLVYMAPMAAS-IFLPF-TLYI---EGIF-I----VYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAA  184 (228)
Q Consensus       115 ~~~~~~~~~~~~~~~~~-~l~~~-~~~~---~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v  184 (228)
                      --+....+.-...+-.. ...|. .+.+   |..+ +    |..+...+......|+.....+..+.|...|+-......
T Consensus       163 ~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP  242 (290)
T KOG4314|consen  163 FGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIP  242 (290)
T ss_pred             chhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCc
Confidence            11222222111111111 11111 1111   2211 2    334444444555566555555666777777766666656


Q ss_pred             HHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          185 LAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       185 ~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                      --..+..++-+-..+...+.|-.+++.|.++.-.-+.+
T Consensus       243 ~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~  280 (290)
T KOG4314|consen  243 GNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK  280 (290)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence            66677777777777888888988998888776544333

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.22  E-value=7.8e-05  Score=62.99  Aligned_cols=121  Identities=9%  Similarity=-0.099  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHH--hH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040323           94 STTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYI--EG----IFIVYLLLGNATIAYLVNLTKFLVR  167 (228)
Q Consensus        94 s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      .-.+....+++.|..++   .-..|..+...+...+.+...+.....  +.    .+.+..++..|++....+...+..+
T Consensus        10 w~~~~~~~~~~NK~~l~---~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l   86 (302)
T TIGR00817        10 WYFLNVYFNIYNKKLLN---VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSL   86 (302)
T ss_pred             HHHHHHHHHHHHHHHHh---hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555667777763   235677777777777766554442111  11    1234444445555555556667889


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          168 KHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       168 ~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      +++++...+++..+.|+++.++++++++|+++..++.|.++.+.|+....
T Consensus        87 ~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        87 SKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999997643

specificities overlap.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.13  E-value=3.4e-05  Score=55.60  Aligned_cols=71  Identities=8%  Similarity=0.084  Sum_probs=57.7

Q ss_pred             HHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          151 GNATIAY-LVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       151 ~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                      ..+.++. ..+...++..++.++ .++....+.|+++.++++++++|+++..++.|.++++.|+....+.+.+
T Consensus        39 ~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   39 LAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            3344443 344455677888885 7789999999999999999999999999999999999999988776543

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.07  E-value=0.00031  Score=50.52  Aligned_cols=55  Identities=11%  Similarity=0.021  Sum_probs=50.0

Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          163 KFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       163 ~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      ...++++.+...+...-++.++.+.++|+++|||++|..+++|..+++.|+....
T Consensus        54 ~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         54 WLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4567889999988888889999999999999999999999999999999997654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.96  E-value=3.2e-05  Score=55.93  Aligned_cols=69  Identities=19%  Similarity=0.275  Sum_probs=55.5

Q ss_pred             ccHHHHHHHHHHHHH-HHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323            8 LSQKQFLKIFALSAI-FCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLA   76 (228)
Q Consensus         8 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~   76 (228)
                      .+++.+......+.+ ......+.+.++++       .+..+.|+++.+++++++||++++++++++.+++.|+.+.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   48 LSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             CChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            334445555666655 45566677777777       8889999999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.92  E-value=0.00029  Score=59.65  Aligned_cols=127  Identities=10%  Similarity=-0.011  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHh-H--H-HHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040323           97 RRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIE-G--I-FIVYLLLGNATIAYLVNLTKFLVRKHTCT  172 (228)
Q Consensus        97 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ++..+.+.+++..+++..+..+..+...|....++...+...... .  + .-+.-....++..+........++++++.
T Consensus        11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~   90 (303)
T PF08449_consen   11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISY   90 (303)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            334466788887754222224777777777776665555443333 1  1 11222233344455555666788999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323          173 LTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF  223 (228)
Q Consensus       173 ~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~  223 (228)
                      .+..+.-..+++...+.+.+++|++.+..++.+.+++.+|+...+..+.++
T Consensus        91 p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~  141 (303)
T PF08449_consen   91 PTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS  141 (303)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence            999999999999999999999999999999999999999999988765443

; GO: 0055085 transmembrane transport

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.91  E-value=0.00023  Score=59.90  Aligned_cols=129  Identities=12%  Similarity=0.051  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHH
Q 040323           87 GFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-----IFIVYLLLGNATIAYLVNL  161 (228)
Q Consensus        87 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  161 (228)
                      |+++++.++++|+...+..|+.    + +.++.+...  ...+..++.........     +..+..-..+|..=...|+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~----~-g~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~   74 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKI----G-GGPYSQTLG--TTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQI   74 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhcc----C-CCHHHHHHH--HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhh
Confidence            6788999999999999999886    1 344544442  22333333332222221     2233334444444444667


Q ss_pred             HHHHHHhccchhHHHHHHH-HHHHHHHHHHHHHhcCcccccc----hhHHHHHHHHHHHHHhhhhh
Q 040323          162 TKFLVRKHTCTLTLQVLGN-AKAALAAVVLVMIFKNPVTVMG----MTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       162 ~~~~~~~~~~~~~~s~~~~-~~~v~~~v~~~~~~ge~~s~~~----~~G~~l~~~g~~~~~~~k~~  222 (228)
                      ..+.++++++......+.+ +.+++..+++.++|||..+..+    .+|.++++.|+.+....|.+
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~  140 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDK  140 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccc
Confidence            7888999999888877777 8888999999999999999999    99999999999887665433

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.87  E-value=0.00019  Score=51.59  Aligned_cols=47  Identities=9%  Similarity=0.123  Sum_probs=40.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323           31 NTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS   77 (228)
Q Consensus        31 ~~~l~~~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~   77 (228)
                      ..+..|.+.++.|+++.+.+++++|||+++++++++.++++|+.+..
T Consensus        62 plg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         62 PVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            33444466679999999999999999999999999999999998764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.84  E-value=0.00091  Score=56.60  Aligned_cols=62  Identities=18%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             HHHHHHHHH-HHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323           15 KIFALSAIF-CFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLA   76 (228)
Q Consensus        15 ~~~~~~~~~-~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~   76 (228)
                      +..+.|+.. ..+...+..++.+       -+.+..-++..+++..++|||++++.+.|+.+++.|..+.
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~li  120 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLI  120 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheee
Confidence            344555432 3344455555555       4457777899999999999999999999999999999874

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.74  E-value=0.0016  Score=53.94  Aligned_cols=135  Identities=16%  Similarity=0.098  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHH---hHH---HHHHHHHHHHHHHHH
Q 040323           85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYI---EGI---FIVYLLLGNATIAYL  158 (228)
Q Consensus        85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~---~~~~~~~~~~~~~~~  158 (228)
                      ..+....+...+.++......|+..+   ...+...........+.....+.....   ..+   ..++..+..+.....
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVE---SLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLAL   82 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHH
Confidence            45777778888888888888887742   124445544444444444422222111   111   122444444545555


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH-HHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          159 VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLV-MIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~-~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                      .+...+..++++++...+...+..|++..+++. ++++|+++..++.|..+.+.|+.+....+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            556667789999999999999999999999997 6669999999999999999999887765443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.68  E-value=0.00033  Score=57.54  Aligned_cols=78  Identities=18%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhh
Q 040323          145 IVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                      ..+.....+++-..-|...+..+++.||.+..+....|.+.+.+++++++|++++..||.+..+...|+......+..
T Consensus        16 ~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   16 DTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            344555566667777788889999999999999999999999999999999999999999999999999988765433

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.42  E-value=0.012  Score=49.43  Aligned_cols=102  Identities=11%  Similarity=-0.067  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHh--H-HHHHHHHHHHHHHHHHHHH
Q 040323           85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIE--G-IFIVYLLLGNATIAYLVNL  161 (228)
Q Consensus        85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~  161 (228)
                      ..|..+++++.++++......|...+    ..++.+...+-..++++++++......  . ++.+......+......+.
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~----~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   86 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFP----LVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNY   86 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHH----HcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999988753    489999999999999888776543221  1 1222223333344444556


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 040323          162 TKFLVRKHTCTLTLQVLGNAKAALAAVVL  190 (228)
Q Consensus       162 ~~~~~~~~~~~~~~s~~~~~~~v~~~v~~  190 (228)
                      ..++.++++++...+...+..|++..+++
T Consensus        87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~  115 (293)
T PRK10532         87 LFYLSIQTVPLGIAVALEFTGPLAVALFS  115 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence            66788999999999999999999998876

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.37  E-value=0.007  Score=44.06  Aligned_cols=56  Identities=11%  Similarity=0.180  Sum_probs=43.6

Q ss_pred             HHHhccch-hHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323          165 LVRKHTCT-LTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       165 ~~~~~~~~-~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k  220 (228)
                      .++++.+. ..+++..-+-.+.+.+.++++|||++|+.+++|..+++.|++..+...
T Consensus        49 ~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         49 FAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            44555443 234444556778889999999999999999999999999999988654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.30  E-value=0.0068  Score=43.45  Aligned_cols=58  Identities=5%  Similarity=0.013  Sum_probs=46.3

Q ss_pred             HHHHhccchh-HHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhh
Q 040323          164 FLVRKHTCTL-TLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKK  221 (228)
Q Consensus       164 ~~~~~~~~~~-~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~  221 (228)
                      ..++++.+.. .+++..-+..+...+.++++|||++|+.+++|+.+++.|+...+..++
T Consensus        48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            3556665543 345555567788899999999999999999999999999999886554

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.27  E-value=0.011  Score=50.61  Aligned_cols=74  Identities=12%  Similarity=0.093  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323          146 VYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV  219 (228)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~  219 (228)
                      +|--++.+++=.-.|+....+.++++.+.++++.+...+++.++++++++|+.++.+++|.++++.|+......
T Consensus        79 ~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen   79 WWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence            33333346677778888889999999999999999999999999999999999999999999999998876544

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.25  E-value=0.11  Score=44.86  Aligned_cols=199  Identities=9%  Similarity=-0.011  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhcccc---c----hHHHHHHHHHhhhhhhhcc----C
Q 040323           19 LSAIFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKE---F----AEVYYALMPVVLVIVLASN----N   79 (228)
Q Consensus        19 ~~~~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~---~----~~~~~~~~l~~~G~~l~~~----~   79 (228)
                      .|++.+.+......+.++        +-..++-+...+...++++|-.   +    ..-.+++++.++|+.+...    .
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k  158 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK  158 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            344444455555555555        5556677777788888888644   2    2456888999999998654    2


Q ss_pred             CC---------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cccCChHHHHHHhhH---HHHHHHHHHHHHH---
Q 040323           80 EP---------LFYLLGFLVCIGSTTRRASKYAIQQILLTSK----AEKINFMNLLVYMAP---MAASIFLPFTLYI---  140 (228)
Q Consensus        80 ~~---------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~l~~~~~~~---  140 (228)
                      |.         .....|+++++.|.+.++.|......-..-+    +...++.....-+..   .+..+........   
T Consensus       159 ~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~  238 (345)
T PRK13499        159 ERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLA  238 (345)
T ss_pred             ccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            21         1236899999999999999994333221000    122333322222211   2322222211111   


Q ss_pred             --hH----HH------HHHH----HHHHHHHHHHHHHHHHHHHhccchh----HHHHHHHHHHHHHHHHHHHHhcCccc-
Q 040323          141 --EG----IF------IVYL----LLGNATIAYLVNLTKFLVRKHTCTL----TLQVLGNAKAALAAVVLVMIFKNPVT-  199 (228)
Q Consensus       141 --~~----~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~~~~~~~v~~~v~~~~~~ge~~s-  199 (228)
                        +.    .+      .++-    -++.|+.=+..++.+....++.+..    ...+...+.-+++.++|. ++||.=+ 
T Consensus       239 k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a  317 (345)
T PRK13499        239 KNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGA  317 (345)
T ss_pred             hCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCC
Confidence              11    00      1121    1344444344444444555555333    222455777799999999 4998866 


Q ss_pred             -----ccchhHHHHHHHHHHHHHh
Q 040323          200 -----VMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       200 -----~~~~~G~~l~~~g~~~~~~  218 (228)
                           ...++|+++++.|..+...
T Consensus       318 ~~k~~~~l~~G~vliI~g~~lig~  341 (345)
T PRK13499        318 SRRPVRVLSLGCVVIILAANIVGL  341 (345)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhh
Confidence                 6778999999999877654

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.24  E-value=0.00076  Score=49.08  Aligned_cols=61  Identities=10%  Similarity=0.111  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323           17 FALSAIFCFSVVCGNTSLRY-------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS   77 (228)
Q Consensus        17 ~~~~~~~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~   77 (228)
                      ...|+.-..+..+...+++.       -+-.+.|+++.+++++++|||+|.++++++.++++|..+..
T Consensus        71 ilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          71 ILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            33343333444444444444       45578999999999999999999999999999999998754

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.23  E-value=0.021  Score=40.82  Aligned_cols=53  Identities=13%  Similarity=0.075  Sum_probs=42.6

Q ss_pred             HHHhccch-hHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          165 LVRKHTCT-LTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       165 ~~~~~~~~-~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      .++|+.+. +.+++..-.-.+.+.+.++++|||++|+.+++|+.+++.|+..-+
T Consensus        54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            44555443 345666667778889999999999999999999999999998764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.20  E-value=0.004  Score=52.68  Aligned_cols=116  Identities=14%  Similarity=0.145  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040323           84 YLLGFLVCIGSTTRRASKYAIQQILLTSKAE-KINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLT  162 (228)
Q Consensus        84 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (228)
                      ...|...++.++++.+...+++|+-..+.++ +.+...-             +.. ... ...|+.....-..+...+  
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~-------------~~~-~l~-~~~W~~G~~~~~~g~~~~--   67 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSG-------------GRS-YLR-RPLWWIGLLLMVLGEILN--   67 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccch-------------hhH-HHh-hHHHHHHHHHHhcchHHH--
Confidence            3679999999999999999999986432111 1111000             000 111 112332222223344444  


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          163 KFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       163 ~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                       +.+....++..++.++...-++..+++..++||+++..++.|..+++.|....-
T Consensus        68 -~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   68 -FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             -HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence             344677788889999999999999999999999999999999999999987643

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.99  E-value=0.022  Score=40.42  Aligned_cols=55  Identities=9%  Similarity=-0.007  Sum_probs=45.7

Q ss_pred             HHHhccc-hhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhh
Q 040323          165 LVRKHTC-TLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKV  219 (228)
Q Consensus       165 ~~~~~~~-~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~  219 (228)
                      .++|+.+ .+.+++..-.-.+.+.+.++++|||++|+.+++|+.+++.|+..-+..
T Consensus        48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~  103 (105)
T PRK11431         48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS  103 (105)
T ss_pred             HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            4566644 345677777888999999999999999999999999999999887643

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.95  E-value=0.038  Score=41.25  Aligned_cols=123  Identities=10%  Similarity=0.055  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccC-ChHHHHHHhhHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHH
Q 040323           88 FLVCIGSTTRRASKYAIQQILLTSKAEKI-NFMNLLVYMAPMAASIFLPFTLYIEGI------FIVYLLLGNATIAYLVN  160 (228)
Q Consensus        88 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~  160 (228)
                      .++++.+.+..+.+.....++-    ++. |++.........+.+.+.......+.+      +..+...+.|+++...-
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~----~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLG----KALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHH
Confidence            4667778888888888887773    334 488888888888877776666554431      22333344777777777


Q ss_pred             HHHHHHHhccchhHHHHHHHHH-HHHHHHHHHH-Hh---cCcccccchhHHHHHHHHHH
Q 040323          161 LTKFLVRKHTCTLTLQVLGNAK-AALAAVVLVM-IF---KNPVTVMGMTEFVVTTMIAV  214 (228)
Q Consensus       161 ~~~~~~~~~~~~~~~s~~~~~~-~v~~~v~~~~-~~---ge~~s~~~~~G~~l~~~g~~  214 (228)
                      .+....+++.++.........- -+.+.+++.+ +|   ++++++...+|.++++.|+.
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            7777889999988776665544 4555666665 33   47789999999999999985

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.77  E-value=0.033  Score=39.43  Aligned_cols=56  Identities=11%  Similarity=0.087  Sum_probs=46.7

Q ss_pred             HHHhccch-hHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323          165 LVRKHTCT-LTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       165 ~~~~~~~~-~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k  220 (228)
                      .++|+.+- +.+++..-.-.+.+.+.|+++|||++|+..++|..++++|+..-+..+
T Consensus        49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            45666543 456777778888899999999999999999999999999999877643

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.66  E-value=0.019  Score=41.80  Aligned_cols=62  Identities=15%  Similarity=0.106  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323           17 FALSAIFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN   78 (228)
Q Consensus        17 ~~~~~~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~   78 (228)
                      ....+.+..++.+...++++        +-....-+.+.+.+.++++|+++..+++++.++++|+.....
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            33344455555555555544        444667778889999999999999999999999999988643

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.58  E-value=0.24  Score=42.35  Aligned_cols=71  Identities=18%  Similarity=0.102  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323          148 LLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~  218 (228)
                      -+...+++-..-|...+....+.||+++++...+|...+.+.++++++++++..||....+.+.|+.....
T Consensus        94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen   94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            34444555566666777889999999999999999999999999999999999999999999999998873

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.50  E-value=0.034  Score=41.04  Aligned_cols=57  Identities=14%  Similarity=0.182  Sum_probs=42.3

Q ss_pred             HHHHHHHhHHHHHH-------HHhHHHHHHHHHHHHH--HhccccchHHHHHHHHHhhhhhhhccC
Q 040323           23 FCFSVVCGNTSLRY-------AVGAATLFFNAISTFL--LTCKKEFAEVYYALMPVVLVIVLASNN   79 (228)
Q Consensus        23 ~~~~~~~~~~~l~~-------~l~~~~Pv~~~il~~l--~~~~~~~~~~~~~~~l~~~G~~l~~~~   79 (228)
                      +..+..+.+.+++.       -+.+..|.++.+.++.  +++|+++.++++++.++++|+.+...+
T Consensus        58 ~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         58 YALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            33455556665555       4446666666667764  899999999999999999999997644

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.25  E-value=0.055  Score=38.41  Aligned_cols=57  Identities=12%  Similarity=0.005  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323           21 AIFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS   77 (228)
Q Consensus        21 ~~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~   77 (228)
                      ..+..+..+...++++        +-...--+.+.+.+++++||+.|+.+++++.+.++|+....
T Consensus        37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            3444445444444444        44456667788999999999999999999999999998763

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.23  E-value=0.049  Score=38.92  Aligned_cols=55  Identities=7%  Similarity=0.044  Sum_probs=41.1

Q ss_pred             HHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323           22 IFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLA   76 (228)
Q Consensus        22 ~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~   76 (228)
                      .+..+..+...++++        +-...--+.+.+.+++++||++++.+++++.+++.|+...
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            344444444444444        4445666677899999999999999999999999999864

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.21  E-value=0.095  Score=36.28  Aligned_cols=46  Identities=13%  Similarity=0.013  Sum_probs=24.0

Q ss_pred             HHHHhccchhHH-HHHHHHHHHHHHHHHHHHhcCcccccchhHHHHH
Q 040323          164 FLVRKHTCTLTL-QVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVT  209 (228)
Q Consensus       164 ~~~~~~~~~~~~-s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~  209 (228)
                      ..++|+.+...+ .+..-...+...+.|+++|||++|+.++.|..++
T Consensus        47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            356777655443 5555677788999999999999999999999874

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.06  E-value=0.073  Score=38.12  Aligned_cols=40  Identities=3%  Similarity=0.035  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323           39 GAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN   78 (228)
Q Consensus        39 ~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~   78 (228)
                      ....-+.+.+.++++++|++++.+++++.++++|+.....
T Consensus        64 ~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4456667789999999999999999999999999998743

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.03  E-value=0.056  Score=38.25  Aligned_cols=56  Identities=11%  Similarity=-0.037  Sum_probs=42.4

Q ss_pred             HHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323           22 IFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS   77 (228)
Q Consensus        22 ~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~   77 (228)
                      .+..++.+...++++        +-...--+.+.+.++++++|+.+..+++++.+.++|+...-
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence            344444444444444        44466667788999999999999999999999999998754

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.99  E-value=0.00079  Score=54.44  Aligned_cols=177  Identities=14%  Similarity=0.080  Sum_probs=121.4

Q ss_pred             HHhHHHHHHHHHHHHHHhccccchHHH----HHHHHHhhhhhhhccCCC--------cchHHHHHHHHHHHHHHHHHHHH
Q 040323           37 AVGAATLFFNAISTFLLTCKKEFAEVY----YALMPVVLVIVLASNNEP--------LFYLLGFLVCIGSTTRRASKYAI  104 (228)
Q Consensus        37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~----~~~~l~~~G~~l~~~~~~--------~~~~~G~~~~l~s~~~~a~~~v~  104 (228)
                      +-..+.-+-+.+++.+.++|..+.-+.    +|+++.++|+.+....|.        +..-.|....+.|.+.|..|.+.
T Consensus        91 iStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl  170 (288)
T COG4975          91 ISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVL  170 (288)
T ss_pred             ccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeeeeccceeeeEee
Confidence            444667778889999999998876554    688889999999765442        12247888888899999999998


Q ss_pred             HHHHhhcccccCChHHHHHHhhHHHHHHHHHH-HHHHh-H--HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 040323          105 QQILLTSKAEKINFMNLLVYMAPMAASIFLPF-TLYIE-G--IFIVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGN  180 (228)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  180 (228)
                      .+-.      ++|.++...-|.. +.++.... ....+ .  ....+.-...|+.=...|...+.+.++.+-.+.=-++.
T Consensus       171 ~~~f------~v~g~saiLPqAi-GMv~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQ  243 (288)
T COG4975         171 FQLF------DVDGLSAILPQAI-GMVIGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQ  243 (288)
T ss_pred             eccc------cccchhhhhHHHH-HHHHHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhh
Confidence            8765      3566655544432 22222222 21221 1  23345555566666667777777788877666656667


Q ss_pred             HHHHHHHHHHHHHhcCcccccch----hHHHHHHHHHHHHHhhh
Q 040323          181 AKAALAAVVLVMIFKNPVTVMGM----TEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       181 ~~~v~~~v~~~~~~ge~~s~~~~----~G~~l~~~g~~~~~~~k  220 (228)
                      +.-+++.+-+.+++||+=|..++    +|.++++.|..+-...|
T Consensus       244 lgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K  287 (288)
T COG4975         244 LGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK  287 (288)
T ss_pred             heeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence            77889999999999999887765    67788888876655443

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=95.55  E-value=0.13  Score=38.53  Aligned_cols=40  Identities=5%  Similarity=0.078  Sum_probs=36.8

Q ss_pred             HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhh
Q 040323           37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLA   76 (228)
Q Consensus        37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~   76 (228)
                      ++..+..+.+.+.+.++++|+++..++.|+.+++.|..+.
T Consensus       112 v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen  112 VLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            7778888889999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=95.45  E-value=0.022  Score=46.92  Aligned_cols=131  Identities=10%  Similarity=0.032  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040323           87 GFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLV  166 (228)
Q Consensus        87 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      |++.++.|+++++...+=.||.     ..-|++....+++....+.-.......+.|.+.....++|.+=...|.+..-+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-----~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpi   75 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-----DTGDGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPI   75 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-----cCCCcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhH
Confidence            5677888888888888878776     23577666666655544444444444555555444444554444455555566


Q ss_pred             Hhccchh-HHHHHHHHHHHHHHHHHHH-HhcCcc-----cccchhHHHHHHHHHHHHHhhhhh
Q 040323          167 RKHTCTL-TLQVLGNAKAALAAVVLVM-IFKNPV-----TVMGMTEFVVTTMIAVLYSKVKKR  222 (228)
Q Consensus       167 ~~~~~~~-~~s~~~~~~~v~~~v~~~~-~~ge~~-----s~~~~~G~~l~~~g~~~~~~~k~~  222 (228)
                      ++.++=. -..+.+..+-+.+...|-+ +||++.     .+.+.+|.+++++|...|..-|.+
T Consensus        76 i~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~  138 (254)
T PF07857_consen   76 IKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE  138 (254)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence            6665532 2334444455555555533 566433     477899999999999998765543

The region concerned is approximately 280 residues long.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=95.27  E-value=0.0073  Score=49.63  Aligned_cols=124  Identities=15%  Similarity=0.060  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHH
Q 040323           86 LGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLY--------IEGIFIVYLLLGNATIAY  157 (228)
Q Consensus        86 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~  157 (228)
                      .|.++..+| ..+....+..++..+     .+|.+.-..-...   .+++..+.        +.++.---.+++=|+.++
T Consensus        38 ~gl~l~~vs-~ff~~~~vv~t~~~e-----~~p~e~a~~r~l~---~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~  108 (346)
T KOG4510|consen   38 LGLLLLTVS-YFFNSCMVVSTKVLE-----NDPMELASFRLLV---RMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF  108 (346)
T ss_pred             cCceehhhH-HHHhhHHHhhhhhhc-----cChhHhhhhhhhh---ehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh
Confidence            577777777 555666666666643     4455444332221   12232221        111111001222333444


Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHh
Q 040323          158 LVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~  218 (228)
                      ..-+..|++.++.+-..++++....|+++++.+|.+++|+.|..+.+|..+++.|+++..+
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR  169 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR  169 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence            4444456777777777888888999999999999999999999999999999999977543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=0.13  Score=43.39  Aligned_cols=49  Identities=16%  Similarity=0.040  Sum_probs=40.6

Q ss_pred             HhHHHHHHHHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhc
Q 040323           29 CGNTSLRYAVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLAS   77 (228)
Q Consensus        29 ~~~~~l~~~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~   77 (228)
                      +.+.++..-+.++.-+..++++..++|||.++.-.+|+.+.++|-.++.
T Consensus        87 FAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   87 FAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV  135 (335)
T ss_pred             hchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence            3334444466788899999999999999999999999999999998754

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.13  E-value=1  Score=38.89  Aligned_cols=128  Identities=11%  Similarity=0.065  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHH--HHhH----------HHHHHHHHHH
Q 040323           85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTL--YIEG----------IFIVYLLLGN  152 (228)
Q Consensus        85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~----------~~~~~~~~~~  152 (228)
                      ..|+++++++++|++...+-+||.     ++-+.+.. .....+-.-++.|...  ..++          +..+....++
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~~-----k~w~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKKV-----KKWSWETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             HHHHHHHHHHHHHhhccccccccc-----CCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            479999999999999999999874     23343333 2111111111222111  1111          1233344445


Q ss_pred             HHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHHHHHhcCcc---c----ccchhHHHHHHHHHHHHHh
Q 040323          153 ATIAYLVNLTKFLVRKHTCTLT-LQVLGNAKAALAAVVLVMIFKNPV---T----VMGMTEFVVTTMIAVLYSK  218 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~v~~~v~~~~~~ge~~---s----~~~~~G~~l~~~g~~~~~~  218 (228)
                      |++=...|...+..+++.+-.. ..+..-++-+.+.+++.+++||-.   +    ...++|.++++.|+.+-.+
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            5544445566666677665443 334445667888899999998654   2    3467899999999988877

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.77  E-value=0.48  Score=34.05  Aligned_cols=105  Identities=7%  Similarity=-0.102  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 040323           95 TTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTKFLVRKHTCTLT  174 (228)
Q Consensus        95 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ++.|+.-+-+.||.-+++++.-++   .  +..-....      ....+++....+++-..+..    +++.+++.+-..
T Consensus         5 g~~WG~Tnpfik~g~~~~~~~~~~---~--~~~~~~~~------Ll~n~~y~ipf~lNq~GSv~----f~~~L~~~dlSl   69 (113)
T PF10639_consen    5 GILWGCTNPFIKRGSSGLEKVKAS---L--QLLQEIKF------LLLNPKYIIPFLLNQSGSVL----FFLLLGSADLSL   69 (113)
T ss_pred             hHHhcCchHHHHHHHhhcCCccch---H--HHHHHHHH------HHHhHHHHHHHHHHHHHHHH----HHHHHhcCCcee
Confidence            456777777788775543333333   1  11111111      12223344444444333222    345577766555


Q ss_pred             HHHH-HHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHH
Q 040323          175 LQVL-GNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAV  214 (228)
Q Consensus       175 ~s~~-~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~  214 (228)
                      +..+ |.+.-+++++.++++.+|..+...++|+++++.|+.
T Consensus        70 avPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~  110 (113)
T PF10639_consen   70 AVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA  110 (113)
T ss_pred             eehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence            5544 688889999999888888889999999999999975

Many members are annotated as potential transmembrane proteins.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.72  E-value=1.3  Score=33.51  Aligned_cols=132  Identities=10%  Similarity=0.011  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhH-H------H-HHHHHHHHHHHH
Q 040323           85 LLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEG-I------F-IVYLLLGNATIA  156 (228)
Q Consensus        85 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~------~-~~~~~~~~~~~~  156 (228)
                      +...++.+.+.++.+.+.-...++-+.   --+|..........+...+.......+. +      . -||.. ..|+++
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~---~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~-~GG~lG   79 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARY---LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAW-IGGLLG   79 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHH-Hccchh
Confidence            345677788888888888887777321   1246666666667777666655554432 1      1 23333 334555


Q ss_pred             HHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHHhc----CcccccchhHHHHHHHHHHHHHhhh
Q 040323          157 YLVNLTKFLVRKHTCTLTLQ-VLGNAKAALAAVVLVMIFK----NPVTVMGMTEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~s-~~~~~~~v~~~v~~~~~~g----e~~s~~~~~G~~l~~~g~~~~~~~k  220 (228)
                      ...-.......+|.++++.. +.-..+-+.+.+++.+=+.    .+++..-++|.++++.|+...+..+
T Consensus        80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~  148 (150)
T COG3238          80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG  148 (150)
T ss_pred             hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            55555556677787776544 4445556666777666543    5678999999999999966555443

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=94.63  E-value=0.2  Score=34.62  Aligned_cols=48  Identities=4%  Similarity=-0.061  Sum_probs=27.4

Q ss_pred             HHHHHHHHhHHHHHH--------HHhHHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 040323           22 IFCFSVVCGNTSLRY--------AVGAATLFFNAISTFLLTCKKEFAEVYYALMPV   69 (228)
Q Consensus        22 ~~~~~~~~~~~~l~~--------~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~   69 (228)
                      .++.+..+...++++        +..+...+.+.+.+..+++|+.|..++.++.++
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            444555555555544        556788888999999999999999999998753

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.53  E-value=0.6  Score=38.82  Aligned_cols=80  Identities=11%  Similarity=0.055  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH-HHHHHHHHHHHHHHhcCcccccchh----HHHHHHHHHHHHHhh
Q 040323          145 IVYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLG-NAKAALAAVVLVMIFKNPVTVMGMT----EFVVTTMIAVLYSKV  219 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~v~~~v~~~~~~ge~~s~~~~~----G~~l~~~g~~~~~~~  219 (228)
                      .++....+|++=...+...+...++.+..+...++ -++-+.+.++++++|||.-+..+++    +.++++.|+.+-++.
T Consensus        44 ~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~  123 (269)
T PF06800_consen   44 SFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQ  123 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccc
Confidence            34444555554444555555666665554444444 3556678889999999998877655    788899999888877


Q ss_pred             hhhhc
Q 040323          220 KKRFK  224 (228)
Q Consensus       220 k~~~~  224 (228)
                      +++++
T Consensus       124 ~~~~~  128 (269)
T PF06800_consen  124 DKKSD  128 (269)
T ss_pred             ccccc
Confidence            66554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.40  E-value=0.26  Score=35.45  Aligned_cols=63  Identities=16%  Similarity=0.143  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHH------hHHHHHH-HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhh
Q 040323           13 FLKIFALSAIFCFSVVC------GNTSLRY-AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVL   75 (228)
Q Consensus        13 ~~~~~~~~~~~~~~~~~------~~~~l~~-~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l   75 (228)
                      ++-.+|+.+..+++..+      .+.|+.+ +..+++=+++.+.++++.+|..++++++++.+++.|+.+
T Consensus        42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            34445665555554433      2333333 777999999999999888888899999999999999875

Many members are annotated as potential transmembrane proteins.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.33  E-value=0.05  Score=46.83  Aligned_cols=79  Identities=13%  Similarity=0.102  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhhc
Q 040323          146 VYLLLGNATIAYLVNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRFK  224 (228)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~~  224 (228)
                      ....++-|..=|..|+....++++++....+++......++..++..+-+|++|+.-+++..+.+.|++..+..+.+|+
T Consensus       159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~  237 (416)
T KOG2765|consen  159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN  237 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence            4445555666677888888899999999999999999999999999999999999999999999999998888765553

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=92.64  E-value=0.66  Score=38.10  Aligned_cols=38  Identities=11%  Similarity=0.074  Sum_probs=35.0

Q ss_pred             HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhh
Q 040323           37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIV   74 (228)
Q Consensus        37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~   74 (228)
                      ++.++.|.+..+.++++++|+++..||.++..++.+..
T Consensus       241 ~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         241 TLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            88899999999999999999999999999988777665

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=89.64  E-value=5.6  Score=33.62  Aligned_cols=128  Identities=9%  Similarity=0.030  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHhhc----ccccC-ChHHHHHHhhHHHHHHHHHHHHHH--hH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 040323           96 TRRASKYAIQQILLTS----KAEKI-NFMNLLVYMAPMAASIFLPFTLYI--EG--IFIVYLLLGNATIAYLVNLTKFLV  166 (228)
Q Consensus        96 ~~~a~~~v~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      ..+-.+.++++|.++.    +++++ ++..+...|...+.++.....-.+  |.  ...+|---..++.......+.+.+
T Consensus        24 ~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yea  103 (327)
T KOG1581|consen   24 ATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEA  103 (327)
T ss_pred             HHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHH
Confidence            4556677888877653    12334 334444455544444432222111  11  123333333344444455556788


Q ss_pred             HhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhhhhh
Q 040323          167 RKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVKKRF  223 (228)
Q Consensus       167 ~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k~~~  223 (228)
                      +|++|=.+..+.-+.|-+-..+++.++.+.+.++....-..++-+|+..+...++.+
T Consensus       104 LKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~  160 (327)
T KOG1581|consen  104 LKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD  160 (327)
T ss_pred             HHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence            999999999999999999999999999999999999999999999998887765443

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.48  E-value=0.12  Score=43.69  Aligned_cols=117  Identities=12%  Similarity=0.191  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040323           84 YLLGFLVCIGSTTRRASKYAIQQILLTSKAEKINFMNLLVYMAPMAASIFLPFTLYIEGIFIVYLLLGNATIAYLVNLTK  163 (228)
Q Consensus        84 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      +..|.++++.|++..+...++.|+-..+.+    ....-+-+.        +.....|  +.||...+.-..+=..|++.
T Consensus        19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~----~~~~ra~~g--------g~~yl~~--~~Ww~G~ltm~vGei~NFaA   84 (335)
T KOG2922|consen   19 NIIGLVLAISSSIFIGSSFILKKKGLKRAG----ASGLRAGEG--------GYGYLKE--PLWWAGMLTMIVGEIANFAA   84 (335)
T ss_pred             ceeeeeehhhccEEEeeehhhhHHHHHHHh----hhcccccCC--------Ccchhhh--HHHHHHHHHHHHHhHhhHHH
Confidence            467888899998888888888887643211    100000000        0011122  45666555555666677665


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          164 FLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       164 ~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      |   ...++.-++.++.+.-+...+++..+++|.++....+|++++++|....-
T Consensus        85 Y---aFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   85 Y---AFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV  135 (335)
T ss_pred             H---hhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence            4   34567777788888999999999999999999999999999999986543

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=88.35  E-value=0.72  Score=36.51  Aligned_cols=59  Identities=10%  Similarity=0.123  Sum_probs=51.8

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q 040323          159 VNLTKFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYS  217 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~  217 (228)
                      .|+-+..++++.+|+.++-+..-+..+..+++++.+||++...-++..++.+.|++...
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia  124 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA  124 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEE
Confidence            45666778999999999999999999999999999999999888888888888876544

>TIGR00803 nst UDP-galactose transporter

Probab=86.95  E-value=1.3  Score=35.47  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=35.6

Q ss_pred             HHhHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhh
Q 040323           37 AVGAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVL   75 (228)
Q Consensus        37 ~l~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l   75 (228)
                      +...+.++++.+++.++++|+++..++.+..+++.|+.+
T Consensus       183 ~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       183 FVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            677889999999999999999999999999999988754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=83.29  E-value=3.8  Score=34.38  Aligned_cols=54  Identities=13%  Similarity=0.152  Sum_probs=47.0

Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHH
Q 040323          163 KFLVRKHTCTLTLQVLGNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLY  216 (228)
Q Consensus       163 ~~~~~~~~~~~~~s~~~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~  216 (228)
                      .+..+..++|....+..-.-.++.-+.+..+++.+++..||.|+..+.+|....
T Consensus       103 m~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviV  156 (372)
T KOG3912|consen  103 MYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIV  156 (372)
T ss_pred             HHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhee
Confidence            344566678888888888889999999999999999999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.58
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.51
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.78
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.5

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.58  E-value=1.5e-07  Score=69.15  Aligned_cols=62  Identities=5%  Similarity=-0.059  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhccchhHHHHH-HHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323          159 VNLTKFLVRKHTCTLTLQVL-GNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~~s~~-~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k  220 (228)
                      ..+....++++.++..+..+ ..+.|++++++|+++|||++|+.+++|+++++.|++..+..+
T Consensus        43 s~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            33445678999999988887 899999999999999999999999999999999999988654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.51  E-value=3.8e-06  Score=59.36  Aligned_cols=60  Identities=5%  Similarity=-0.038  Sum_probs=53.2

Q ss_pred             HHHHHHHhccchhHHHHH-HHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhh
Q 040323          161 LTKFLVRKHTCTLTLQVL-GNAKAALAAVVLVMIFKNPVTVMGMTEFVVTTMIAVLYSKVK  220 (228)
Q Consensus       161 ~~~~~~~~~~~~~~~s~~-~~~~~v~~~v~~~~~~ge~~s~~~~~G~~l~~~g~~~~~~~k  220 (228)
                      +....++|+.+...+..+ ..+.|+.+.+.++++|||++|+.+++|..+++.|+...+..+
T Consensus        45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            334567899998888777 899999999999999999999999999999999999988754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.78  E-value=0.00019  Score=50.56  Aligned_cols=59  Identities=10%  Similarity=0.149  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhHHHHHH-------HH-hHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhccC
Q 040323           21 AIFCFSVVCGNTSLRY-------AV-GAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASNN   79 (228)
Q Consensus        21 ~~~~~~~~~~~~~l~~-------~l-~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~~   79 (228)
                      +.+..+..+.+.++++       .+ .++.|+++.+.+++++||++++.+++++.+++.|+......
T Consensus        38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3445555555555555       44 79999999999999999999999999999999999987543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.50  E-value=0.00016  Score=52.91  Aligned_cols=58  Identities=10%  Similarity=0.169  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhHHHHHH-------HH-hHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhhhhcc
Q 040323           21 AIFCFSVVCGNTSLRY-------AV-GAATLFFNAISTFLLTCKKEFAEVYYALMPVVLVIVLASN   78 (228)
Q Consensus        21 ~~~~~~~~~~~~~l~~-------~l-~~~~Pv~~~il~~l~~~~~~~~~~~~~~~l~~~G~~l~~~   78 (228)
                      +.++.+..+.+.++++       .+ .++.|+++.++++++++|++++.+++++.++++|+.+...
T Consensus        38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3455555555666655       44 7999999999999999999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00