Citrus Sinensis ID: 040326

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
MAALRKIKINNSLLQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLLNHLLIVALDSKAFQYCKTVHPHCFYLSNSSTRYTKKKQLSLPQLRNKFWQEVIELAYSVVFTEVDVMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITSEYFKYQDMTRILFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNINMDTICTVRANCCDDTESKLHDLKLLLEDWRSFTKKNSLRGSSPPYTWRAHSICKG
cccccccccccHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHccccccccccEEEEEEcHHHHHHHHHHcccEEEEcccccccccHHHHcccccHHHHHHHHHHHccEEEEEEcEEEEEccccccccccccEEEEccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccEEEEccccccccEEcccccccccEEEEcccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccc
cccHHcccccHHHHHHHHHHHccccEEEEEEEcHHHcccccHHHHHHHHHHcccccHHHHccEEEEEEcHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEEccccccccccccEEEEEcccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHccEEEEEEcccHccccccccccHHEEEEEEcHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccc
MAALRKIKINNSLLQLLRRTTMQDRTVIITMVgqewaspgsvlDLFLESFCIGEETKHLLNHLLIVALDSKAFqycktvhphcfylsnsstrytkkkqlslpQLRNKFWQEVIELAYSVVFTEVDvmwlrnpilqvdCLKEMTIACdvysddlqnisyvkdggffylksnaitseyfkyqdmtrilfpdsqnrtlceeTVVNEELFETLSLRVNYMEqdryggfcqqninmdtictvranccddtesKLHDLKLLLEDWRSFtkknslrgssppytwrahsickg
MAALRKIKINNSLLQLLRRTTMQDRTVIITMvgqewaspgSVLDLFLESFCIGEETKHLLNHLLIVALDSKAFQYCKTVHPHCfylsnsstrytKKKQLSLPQLRNKFWQEVIELAYSVVFTEVDVMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITSEYFKYQDMTRILFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNINMDTICTVRANCCDDTESKLHDLKLLLEDWRSftkknslrgssppytwrahsickg
MAALRKIKINNSLLQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLLNHLLIVALDSKAFQYCKTVHPHCFYLSNSSTRYTKKKQLSLPQLRNKFWQEVIELAYSVVFTEVDVMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITSEYFKYQDMTRILFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNINMDTICTVRANCCDDTESKLHDLKLLLEDWRSFTKKNSLRGSSPPYTWRAHSICKG
******IKINNSLLQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLLNHLLIVALDSKAFQYCKTVHPHCFYLSNSSTRYTKKKQLSLPQLRNKFWQEVIELAYSVVFTEVDVMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITSEYFKYQDMTRILFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNINMDTICTVRANCCDDTESKLHDLKLLLEDWRSFT**********************
*************LQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLLNHLLIVALDSKAFQYCKTVHPHCFYLSNSSTRYTKKKQLSLPQLRNKFWQEVIELAYSVVFTEVDVMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITSEYFKYQDMTRILFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNINMDTICTVRANCCDDTESKLHDLKLLLEDWRS***************WRAHSICK*
MAALRKIKINNSLLQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLLNHLLIVALDSKAFQYCKTVHPHCFYLSNSSTRYTKKKQLSLPQLRNKFWQEVIELAYSVVFTEVDVMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITSEYFKYQDMTRILFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNINMDTICTVRANCCDDTESKLHDLKLLLEDWRSFTKKNSLRGSSPPYTWRAHSICKG
*****KIKINNSLLQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLLNHLLIVALDSKAFQYCKTVHPHCFYLSNSSTRYTKKKQLSLPQLRNKFWQEVIELAYSVVFTEVDVMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITSEYFKYQDMTRILFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNINMDTICTVRANCCDDTESKLHDLKLLLEDWRSFTKKN**********W********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAALRKIKINNSLLQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLLNHLLIVALDSKAFQYCKTVHPHCFYLSNSSTRYTKKKQLSLPQLRNKFWQEVIELAYSVVFTEVDVMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITSEYFKYQDMTRILFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNINMDTICTVRANCCDDTESKLHDLKLLLEDWRSFTKKNSLRGSSPPYTWRAHSICKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query285 2.2.26 [Sep-21-2011]
P0C042367 Uncharacterized protein A no no 0.849 0.659 0.302 4e-39
Q3E6Y3329 Uncharacterized protein A no no 0.873 0.756 0.307 5e-30
>sp|P0C042|Y4597_ARATH Uncharacterized protein At4g15970 OS=Arabidopsis thaliana GN=At4g15970 PE=2 SV=1 Back     alignment and function desciption
 Score =  161 bits (408), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 142/258 (55%), Gaps = 16/258 (6%)

Query: 13  LLQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLLNHLLIVALDSKA 72
           L ++L     +D+TVIIT + + W+ P S  DLFL SF +G+ TK LL HL++  LD +A
Sbjct: 42  LGKILTEAATEDKTVIITTLNKAWSEPNSTFDLFLHSFHVGKGTKPLLRHLVVACLDEEA 101

Query: 73  FQYCKTVHPH-CFYLSNSSTRYTKKKQLSLPQLRNKFWQEV------IELAYSVVFTEVD 125
           +  C  VHPH C+++      +   K    P      W+ +      ++L Y+ +FT   
Sbjct: 102 YSRCSEVHPHRCYFMKTPGIDFAGDKMFMTPDYLKMMWRRIEFLGTLLKLRYNFIFTI-- 159

Query: 126 VMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITSEYFKYQDMTRI 185
                 P  ++    +  IACD YS D ++I    +GGF ++K+N  T +++ Y  M+R+
Sbjct: 160 ------PFPRLSKEVDFQIACDRYSGDDKDIHNAVNGGFAFVKANQRTIDFYNYWYMSRL 213

Query: 186 LFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNINMDTICTVRANCCDDT 245
            +PD  ++ + ++ +        + L++ +++   +GGFC+ + ++D +CT+ ANCC   
Sbjct: 214 RYPDRHDQDVLDQ-IKGGGYPAKIGLKMRFLDTKYFGGFCEPSRDLDKVCTMHANCCVGL 272

Query: 246 ESKLHDLKLLLEDWRSFT 263
           E+K+ DL+ ++ DW ++ 
Sbjct: 273 ENKIKDLRQVIVDWENYV 290

Arabidopsis thaliana (taxid: 3702)
>sp|Q3E6Y3|Y1869_ARATH Uncharacterized protein At1g28695 OS=Arabidopsis thaliana GN=At1g28695 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
359488580308 PREDICTED: uncharacterized protein At4g1 0.933 0.863 0.465 6e-66
224125690357 predicted protein [Populus trichocarpa] 0.971 0.775 0.370 3e-54
255536925254 conserved hypothetical protein [Ricinus 0.796 0.893 0.417 3e-53
186528122322 Nucleotide-diphospho-sugar transferase f 0.877 0.776 0.424 7e-53
357111002375 PREDICTED: uncharacterized protein At4g1 0.985 0.749 0.349 5e-52
357142041364 PREDICTED: uncharacterized protein At4g1 0.905 0.708 0.367 3e-51
242055407300 hypothetical protein SORBIDRAFT_03g04403 0.943 0.896 0.374 1e-50
326493850362 predicted protein [Hordeum vulgare subsp 0.954 0.751 0.362 1e-50
242055411348 hypothetical protein SORBIDRAFT_03g04405 0.929 0.761 0.346 4e-50
414869642 573 TPA: hypothetical protein ZEAMMB73_13999 0.866 0.431 0.375 4e-50
>gi|359488580|ref|XP_002273650.2| PREDICTED: uncharacterized protein At4g15970-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  256 bits (655), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 130/279 (46%), Positives = 182/279 (65%), Gaps = 13/279 (4%)

Query: 13  LLQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLLNHLLIVALDSKA 72
           L++LLR+ +M DRTVI+T++ Q WA PGSVL+LFLESF +G  TK LLNHL+IV  D +A
Sbjct: 34  LVELLRKASMPDRTVILTILDQAWARPGSVLELFLESFKVGVGTKKLLNHLVIVTTDDQA 93

Query: 73  FQYCKTVHPHCFYLSNSSTRYTKKKQLSLPQLRNKFWQ-------EVIELAYSVVFTEVD 125
           FQYCK +HPHCF L      +  +K L  P  R+KF +       EV EL Y+ VFT+ D
Sbjct: 94  FQYCKAMHPHCFPLPTPED-FVARKPLMHPD-RSKFGRRTIRLLGEVDELGYNFVFTDAD 151

Query: 126 VMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITSEYFKYQDMTRI 185
           VMWL+NP L VD ++++TIAC+VY+ D ++ S   D GFF++KS  I+ E+ KY ++  +
Sbjct: 152 VMWLKNPFLYVDPIQDLTIACEVYTGDPKSTSNKADRGFFFVKSTDISVEFLKYWEVAMV 211

Query: 186 LFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNINMDTICTVRANCCDDT 245
           L PD   +++ E    +E     L +R+ Y++   + GFCQ N +M  + T+ ANCC+D 
Sbjct: 212 LHPDHDAQSVLEMIKEDEVAQFRLRVRIKYLDTVHFSGFCQPNKDMRQVHTMHANCCEDL 271

Query: 246 ESKLHDLKLLLEDWRSFTKKNSLRGSSPPYTWRAHSICK 284
           ESK+HDL+L+L+DWR+     S  GSS    WR  S CK
Sbjct: 272 ESKVHDLRLVLDDWRNSMTSLSTPGSS----WRVPSKCK 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125690|ref|XP_002329694.1| predicted protein [Populus trichocarpa] gi|222870602|gb|EEF07733.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255536925|ref|XP_002509529.1| conserved hypothetical protein [Ricinus communis] gi|223549428|gb|EEF50916.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|186528122|ref|NP_198906.2| Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana] gi|332007231|gb|AED94614.1| Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357111002|ref|XP_003557304.1| PREDICTED: uncharacterized protein At4g15970-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|357142041|ref|XP_003572439.1| PREDICTED: uncharacterized protein At4g15970-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242055407|ref|XP_002456849.1| hypothetical protein SORBIDRAFT_03g044030 [Sorghum bicolor] gi|241928824|gb|EES01969.1| hypothetical protein SORBIDRAFT_03g044030 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|326493850|dbj|BAJ85387.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|242055411|ref|XP_002456851.1| hypothetical protein SORBIDRAFT_03g044050 [Sorghum bicolor] gi|241928826|gb|EES01971.1| hypothetical protein SORBIDRAFT_03g044050 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|414869642|tpg|DAA48199.1| TPA: hypothetical protein ZEAMMB73_139999 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
TAIR|locus:2164476322 AT5G40900 "AT5G40900" [Arabido 0.852 0.754 0.444 1.7e-52
TAIR|locus:2119827715 AT4G19970 "AT4G19970" [Arabido 0.940 0.374 0.345 2.9e-48
TAIR|locus:2204508386 AT1G14590 "AT1G14590" [Arabido 0.936 0.691 0.35 3e-46
TAIR|locus:4515102789408 AT2G02061 "AT2G02061" [Arabido 0.947 0.661 0.348 3e-46
TAIR|locus:2156304367 AT5G44820 "AT5G44820" [Arabido 0.936 0.727 0.326 1.6e-45
TAIR|locus:2018688338 AT1G28700 "AT1G28700" [Arabido 0.891 0.751 0.315 5.4e-31
TAIR|locus:1006230710329 AT1G28695 "AT1G28695" [Arabido 0.859 0.744 0.314 3e-30
TAIR|locus:2018783340 AT1G28710 "AT1G28710" [Arabido 0.915 0.767 0.296 2.1e-29
TAIR|locus:2164476 AT5G40900 "AT5G40900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 115/259 (44%), Positives = 164/259 (63%)

Query:    10 NNSLLQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLLNHLLIVALD 69
             ++ L  LL+    +D+ VIITMV +EWA P S+LDLFLES  IGE TKHLLNHL++VALD
Sbjct:    54 SSGLSSLLKEAATEDKIVIITMVDREWAKPDSILDLFLESVRIGERTKHLLNHLIVVALD 113

Query:    70 SKAFQYCKTVHPHCFYLSNSSTRYTKKKQLSL-PQLRNKFW------QEVIELAYSVVFT 122
              +A +YC   HPHC YL     RY++KK  SL P      W      +E++EL Y ++FT
Sbjct:   114 DQALRYCLRAHPHC-YLH----RYSRKKSESLKPDGLVTGWNKKSLVKEILELGYHIMFT 168

Query:   123 EVDVMWLRNPILQVDCLKEMTIACDVYSDDLQN--ISYVKDGGFFYLKSNAITSEYFKYQ 180
             E DVMWLRNP++  +    +++AC     D Q+  ++    GGFFY KSN IT + F   
Sbjct:   169 EADVMWLRNPLMHCNPQNAISVACGNSLIDHQHDHLTTENTGGFFYAKSNDITIDMFNIL 228

Query:   181 DMTRILFPDSQNRTLCEETVVNEELFETLSLRVNYMEQDRYGGFCQQNI-NMDTICTVRA 239
             ++ R+L+P + N++LC+  V  E++ + L  +V +++   +G FCQ N  +   I TV A
Sbjct:   229 NVERVLYPATGNQSLCD-IVKREDVIKALDKKVTFLDDANFGKFCQPNPQDQSKITTVHA 287

Query:   240 NCCDDTESKLHDLKLLLED 258
             +CC DT+SK+  LKLLL+D
Sbjct:   288 SCCHDTKSKVRYLKLLLQD 306
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2119827 AT4G19970 "AT4G19970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204508 AT1G14590 "AT1G14590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515102789 AT2G02061 "AT2G02061" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156304 AT5G44820 "AT5G44820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018688 AT1G28700 "AT1G28700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230710 AT1G28695 "AT1G28695" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018783 AT1G28710 "AT1G28710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
pfam03407208 pfam03407, Nucleotid_trans, Nucleotide-diphospho-s 4e-35
>gnl|CDD|217539 pfam03407, Nucleotid_trans, Nucleotide-diphospho-sugar transferase Back     alignment and domain information 
 Score =  125 bits (315), Expect = 4e-35
 Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 29/216 (13%)

Query: 58  HLLNHLLIVALDSKAFQYCKTVHPHCFYL-------SNSSTRYTKKKQLSLPQLRNKFWQ 110
            LL +LL+VALD +A++ CK + PH  YL       S     +  K  L +   R +   
Sbjct: 1   GLLENLLVVALDEEAYKRCKELGPHICYLLSDVKDVSKKDFVFGSKTYLKMSWRRVRLLL 60

Query: 111 EVIELAYSVVFTEVDVMWLRNP---ILQVDCLKEMTIACDVYSDD-LQNISYVKDGGFFY 166
           E++EL Y+ +F++VDV+WLRNP   +   D   ++ I+ D Y       +    +GGFFY
Sbjct: 61  ELLELGYNFIFSDVDVVWLRNPFPLLYLPDA--DIIISSDNYDGTTADGLKNWLNGGFFY 118

Query: 167 LKSNAITSEYFKYQDMTRILFPDSQNRTLCEETVVNEELFET----LSLRVNYMEQDRYG 222
           ++    +   FK      + +P      L ++ V N  L E     L  +  +++   +G
Sbjct: 119 VRPTNRSIALFKKWAERLLTYP-----GLHDQDVFNYLLREGAAGELGYKCRFLDTALFG 173

Query: 223 GFCQQNINMDTICTVR------ANCCDDTESKLHDL 252
           GFCQ   +   + T +      ANCC  T+ KLH L
Sbjct: 174 GFCQSR-DWKYVQTDKKPVAVHANCCSGTDGKLHRL 208

Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases. Length = 208

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 285
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 98.18
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 97.93
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 97.87
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 97.81
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 97.76
PLN00176333 galactinol synthase 97.73
PLN03181453 glycosyltransferase; Provisional 97.61
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 97.44
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 97.35
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 96.67
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 96.64
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 94.5
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 92.2
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 91.79
PF03314222 DUF273: Protein of unknown function, DUF273; Inter 91.72
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 90.31
PLN02829639 Probable galacturonosyltransferase 88.36
KOG4748364 consensus Subunit of Golgi mannosyltransferase com 85.75
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-42  Score=301.61  Aligned_cols=193  Identities=26%  Similarity=0.511  Sum_probs=164.9

Q ss_pred             cccccEEEEEeCHHHHHHHHHhCCcEEEeecC-------cccccccccccchhhHHHHHHHHHHhcceEEEEeccEEEec
Q 040326           58 HLLNHLLIVALDSKAFQYCKTVHPHCFYLSNS-------STRYTKKKQLSLPQLRNKFWQEVIELAYSVVFTEVDVMWLR  130 (285)
Q Consensus        58 ~l~~~~lVvA~D~~~~~~c~~~~~~c~~~~~~-------g~~~~s~~~~~~~~~K~~~i~~vL~lGy~vl~sDvDvVWlr  130 (285)
                      ++++|++|+|+|+++++.|++++++|+.....       +..|+++.|..++|.|+.+++++|++||+|+|+|+||||+|
T Consensus         1 ~~~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~   80 (212)
T PF03407_consen    1 HLIDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLR   80 (212)
T ss_pred             CccccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEec
Confidence            46899999999999999999999998887653       12899999999999999999999999999999999999999


Q ss_pred             Cccccc-CCCCCeEEecCCCCCCC-CCCCCccceEEEEEEeChhHHHHHHHHHHHHhcCCCCCChhhhhHHhhccccc-c
Q 040326          131 NPILQV-DCLKEMTIACDVYSDDL-QNISYVKDGGFFYLKSNAITSEYFKYQDMTRILFPDSQNRTLCEETVVNEELF-E  207 (285)
Q Consensus       131 nP~~~~-~~~aDi~~~~D~~~~~~-~~~~~~~NsGf~~~R~t~~t~~~~~~w~~~~~~~~~~~DQ~~fn~~~v~~~~~-~  207 (285)
                      ||+++| .+++|+++++|+..+.+ ......+|+||||+|||++|++|+++|.......++.+||.+||+  +.++.. .
T Consensus        81 dp~~~~~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~--~l~~~~~~  158 (212)
T PF03407_consen   81 DPLPYFENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNE--LLREQAAR  158 (212)
T ss_pred             CcHHhhccCCCceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHH--HHHhcccC
Confidence            999999 88999999999877642 334566799999999999999999999987777778889999995  443433 2


Q ss_pred             CCCeEEEEeccCCCC-C---ccc-ccC-C---CCceEEEeccccCChhhhHHHH
Q 040326          208 TLSLRVNYMEQDRYG-G---FCQ-QNI-N---MDTICTVRANCCDDTESKLHDL  252 (285)
Q Consensus       208 ~~gl~v~~Ld~~~F~-g---~~~-~~~-d---~~~~~~vHan~~~G~~~K~~~l  252 (285)
                      ..++++++||+..|| |   |++ ... .   ..+|++||+||+.|.++|++||
T Consensus       159 ~~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~~vH~n~~~g~~~K~~~~  212 (212)
T PF03407_consen  159 YGGLRVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPYIVHANCCDGKEGKRQRF  212 (212)
T ss_pred             CcCcEEEEeCHHHeeccccceeecchhhhhccccccceEEEcCCCChHhHHhhC
Confidence            279999999999997 2   455 111 1   2479999999999999999886

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 79/288 (27%)

Query: 4   LRKIKINNSLLQLLRRTTMQDRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHLL--- 60
           L+      ++L++L     Q     I       +   S + L + S  I  E + LL   
Sbjct: 189 LKNCNSPETVLEML-----QKLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELRRLLKSK 241

Query: 61  ---NHLLIVALDS-------KAFQY-CKTVHPHCFYLSNSSTRYTKKKQLSLPQLRNKFW 109
              N LL+  L +        AF   CK +          +TR+   KQ++   L     
Sbjct: 242 PYENCLLV--LLNVQNAKAWNAFNLSCKIL---------LTTRF---KQVTD-FLSAATT 286

Query: 110 QEVIELAYSVVFTEVDVM-----WLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGF 164
             +    +S+  T  +V      +L         L            + + +S + +   
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPRE--VLTT---NPRRLSIIAE--- 335

Query: 165 FYLKSNAITSEYFKYQDMTRILFPDSQNRTL-----CEETVVNEELFETLSLRVNYMEQD 219
             ++    T + +K+ +       D     +       E     ++F+ LS+        
Sbjct: 336 -SIRDGLATWDNWKHVNC------DKLTTIIESSLNVLEPAEYRKMFDRLSV----FPPS 384

Query: 220 RYGGFCQQNINMDTICTV----RANCCDDTESKLHDLKLLLEDWRSFT 263
                   +I    +  +      +      +KLH   L+ +  +  T
Sbjct: 385 -------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 97.89
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 97.8
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 97.35
3tzt_A276 Glycosyl transferase family 8; structural genomics 96.56
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
Probab=97.89  E-value=0.00011  Score=68.08  Aligned_cols=152  Identities=15%  Similarity=0.156  Sum_probs=89.7

Q ss_pred             eEEEEEeCccccCCcchHHHHHHHhccccccccc-cccEEEEEeC---HHHHHHHHHhCCcEEEeecCccc------ccc
Q 040326           26 TVIITMVGQEWASPGSVLDLFLESFCIGEETKHL-LNHLLIVALD---SKAFQYCKTVHPHCFYLSNSSTR------YTK   95 (285)
Q Consensus        26 tVilt~~n~~~~~~~s~l~~fl~s~r~g~~t~~l-~~~~lVvA~D---~~~~~~c~~~~~~c~~~~~~g~~------~~s   95 (285)
                      .-|+.++|.+|+.   -+..-+.|++     +.. -..++|+..|   ++..+.+++.+........-...      ...
T Consensus         5 a~vt~~~d~~Yl~---~a~vl~~SL~-----~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~   76 (333)
T 1ll2_A            5 AFVTLTTNDAYAK---GALVLGSSLK-----QHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMK   76 (333)
T ss_dssp             EEEEEESSHHHHH---HHHHHHHHHH-----HTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHH
T ss_pred             EEEEEEeCHHHHH---HHHHHHHHHH-----HhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhccccc
Confidence            3444457888887   6677778886     222 2345555443   56667777777554444321110      001


Q ss_pred             cccccchhhHHHHHHHHHHhcce-EEEEeccEEEecCcccccCCCCCeEEecCCCCCCCCCCCCccceEEEEEEeChhHH
Q 040326           96 KKQLSLPQLRNKFWQEVIELAYS-VVFTEVDVMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAITS  174 (285)
Q Consensus        96 ~~~~~~~~~K~~~i~~vL~lGy~-vl~sDvDvVWlrnP~~~~~~~aDi~~~~D~~~~~~~~~~~~~NsGf~~~R~t~~t~  174 (285)
                      ......++.|..+.. +  ..|+ ||+.|+|++.++|+-+.|.-+ .+...-|.      ..+..+|+|+|.++++..+ 
T Consensus        77 ~~~~~~t~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~-~~aAv~d~------~~~~~fNsGvmlin~~~~~-  145 (333)
T 1ll2_A           77 RPELGVTLTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE-ELSAAPDP------GWPDCFNSGVFVYQPSVET-  145 (333)
T ss_dssp             CGGGHHHHHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC-SSEEEECS------SSTTSEEEEEEEECCCHHH-
T ss_pred             ccchHHHHHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC-ceeEEecC------CCCcceeeeEEEEeCCHHH-
Confidence            122345666666554 2  3444 999999999999998888644 33333342      1246799999999997544 


Q ss_pred             HHHHHHHHHHhcCC--CCCChhhhhH
Q 040326          175 EYFKYQDMTRILFP--DSQNRTLCEE  198 (285)
Q Consensus       175 ~~~~~w~~~~~~~~--~~~DQ~~fn~  198 (285)
                        ++.+.+......  ...||.++|.
T Consensus       146 --~~~l~~~~~~~~~~~~~DQ~~LN~  169 (333)
T 1ll2_A          146 --YNQLLHVASEQGSFDGGDQGLLNT  169 (333)
T ss_dssp             --HHHHHHHHHHTCCTTSSHHHHHHH
T ss_pred             --HHHHHHHHHhcCCCCCCCHHHHHH
Confidence              333333211111  3479999994
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 97.96
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 97.75
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.96  E-value=3e-05  Score=66.40  Aligned_cols=156  Identities=15%  Similarity=0.136  Sum_probs=100.6

Q ss_pred             CCeEEEEEeCccccCCcchHHHHHHHhccccccccc-cccEEEEEeC---HHHHHHHHHhCCcEEEeecC----cc--cc
Q 040326           24 DRTVIITMVGQEWASPGSVLDLFLESFCIGEETKHL-LNHLLIVALD---SKAFQYCKTVHPHCFYLSNS----ST--RY   93 (285)
Q Consensus        24 d~tVilt~~n~~~~~~~s~l~~fl~s~r~g~~t~~l-~~~~lVvA~D---~~~~~~c~~~~~~c~~~~~~----g~--~~   93 (285)
                      ++.-+..++|.+|+.   -+...+.|++     +.. ...++|+..+   ++..+.+++.+..+...+.-    ..  ..
T Consensus         3 ~~A~vt~~t~d~Yl~---~a~vl~~SL~-----~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~   74 (263)
T d1ll2a_           3 DQAFVTLTTNDAYAK---GALVLGSSLK-----QHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTL   74 (263)
T ss_dssp             SEEEEEEESSHHHHH---HHHHHHHHHH-----HTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHH
T ss_pred             ccEEEEEEeCHHHHH---HHHHHHHHHH-----HHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhh
Confidence            444444457999988   6778888887     232 1234444443   67778888888887766531    11  12


Q ss_pred             cccccccchhhHHHHHHHHHHhcce-EEEEeccEEEecCcccccCCCCCeEEecCCCCCCCCCCCCccceEEEEEEeChh
Q 040326           94 TKKKQLSLPQLRNKFWQEVIELAYS-VVFTEVDVMWLRNPILQVDCLKEMTIACDVYSDDLQNISYVKDGGFFYLKSNAI  172 (285)
Q Consensus        94 ~s~~~~~~~~~K~~~i~~vL~lGy~-vl~sDvDvVWlrnP~~~~~~~aDi~~~~D~~~~~~~~~~~~~NsGf~~~R~t~~  172 (285)
                      ....+...++.|+.+.. +  ..|+ ||+.|+|++-++|+-+.|..+.-..+. |.      ......|+|++.+.++..
T Consensus        75 ~~~~~~~~ty~Kl~i~~-l--~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~-~~------~~~~~~nsGv~l~~p~~~  144 (263)
T d1ll2a_          75 MKRPELGVTLTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFEREELSAAP-DP------GWPDCFNSGVFVYQPSVE  144 (263)
T ss_dssp             HHCGGGHHHHHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSCSSEEEE-CS------SSTTSEEEEEEEECCCHH
T ss_pred             hccccchhhhHHHHHhh-h--cccceEEEeCCCEEEecCHHHHhcCCccceec-cC------CCcccccCCcEEECccHH
Confidence            22345556677776644 2  3455 999999999999999988755432222 21      234679999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCChhhhhH
Q 040326          173 TSEYFKYQDMTRILFPDSQNRTLCEE  198 (285)
Q Consensus       173 t~~~~~~w~~~~~~~~~~~DQ~~fn~  198 (285)
                      ...-+.+...... .....||.++|.
T Consensus       145 ~~~~i~~~~~~~~-~~~~~dq~~ln~  169 (263)
T d1ll2a_         145 TYNQLLHVASEQG-SFDGGDQGLLNT  169 (263)
T ss_dssp             HHHHHHHHHHHTC-CTTSSHHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCChhhhhHHHH
Confidence            7776665544222 223479999993
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure