Citrus Sinensis ID: 040328

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MGVSFNINPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAAGASRFQEEDSKAWSRPFQVYV
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHccccccHHHHHHHHHHHHHHHHHHHHHEHEEcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
mgvsfninpssssfaethsrKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIAVSSLSvatsssnkcyAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHafvdgsnsgaagasrfqeedskawsrpfqvyv
Flexible Loop (DISEMBL)
mgvsfninpssssfaETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSgaagasrfqeedskawsrpfqvyv
Low Complexity Region (SEG)
MGVSFNINPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIavsslsvatsssNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAAGASRFQEEDSKAWSRPFQVYV
Disordered region (IsUnstruct)
*********************HKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVD****************************
Disordered Region (DISOPRED)
*********************HKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFV*********************SRPFQVYV
Disordered Region (DISEMBL)
*******************RKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGA**********************
Disordered Region (DISPRO)
**************A*THSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSN*************SKAWSRPFQVYV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVSFNINPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAAGASRFQEEDSKAWSRPFQVYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
225467749	189	PREDICTED: uncharacterized protein LOC10	0.978	0.968	0.633	1e-57
224109514	186	predicted protein [Populus trichocarpa]	0.946	0.951	0.65	5e-57
224101255	191	predicted protein [Populus trichocarpa]	0.989	0.968	0.623	1e-56
224109182	191	predicted protein [Populus trichocarpa]	0.989	0.968	0.617	2e-56
317106645	189	JHL23J11.5 [Jatropha curcas]	0.941	0.931	0.642	3e-56
255567776	193	conserved hypothetical protein [Ricinus	0.983	0.953	0.647	4e-56
255547444	190	conserved hypothetical protein [Ricinus	0.941	0.926	0.637	5e-56
224121768	174	predicted protein [Populus trichocarpa]	0.882	0.948	0.668	1e-52
357507865	316	hypothetical protein MTR_7g080550 [Medic	0.967	0.572	0.597	7e-52
388497550	185	unknown [Medicago truncatula]	0.967	0.978	0.597	1e-51

>gi|225467749|ref|XP_002265070.1| PREDICTED: uncharacterized protein LOC100267455 [Vitis vinifera] gi|296080863|emb|CBI18793.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 121/191 (63%), Positives = 142/191 (74%), Gaps = 8/191 (4%)

Query: 1   MGVSFNINPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILL 60
           MG+S  I+  SSS  E+H   HK+ L  NYILL A+SS IFLTLSLRL PS+ GFFLILL
Sbjct: 1   MGLS--IHNQSSSVTESHYHTHKVFLFCNYILLGAASSCIFLTLSLRLLPSVCGFFLILL 58

Query: 61  HVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVR 120
           H+LTI  AVS  + A++ +++ YAAHMV TVLT IFQGSVSVLIF  TSDFLG LKSYVR
Sbjct: 59  HILTITGAVSGCAAASTGTSRWYAAHMVTTVLTAIFQGSVSVLIFTRTSDFLGDLKSYVR 118

Query: 121 EEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAAG------ASRFQEE 174
           EEDGAVILKLAG LS+LIF LEWVV+ L F L+Y+A+V+G   G++G      A   QEE
Sbjct: 119 EEDGAVILKLAGGLSILIFCLEWVVMILAFFLKYYAYVEGDGCGSSGSAMKKSAKVQQEE 178

Query: 175 DSKAWSRPFQV 185
           D K W  PFQV
Sbjct: 179 DLKDWPWPFQV 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109514|ref|XP_002333247.1| predicted protein [Populus trichocarpa] gi|224146576|ref|XP_002326057.1| predicted protein [Populus trichocarpa] gi|118484881|gb|ABK94307.1| unknown [Populus trichocarpa] gi|222835792|gb|EEE74227.1| predicted protein [Populus trichocarpa] gi|222862932|gb|EEF00439.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 117/180 (65%), Positives = 131/180 (72%), Gaps = 3/180 (1%)

Query: 8   NPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILI 67
           N  S    E+H   H    I NYILL A+SS IFLTLSLRLFPSL GFF++LLH+ TI+ 
Sbjct: 6   NHKSCPVTESHHSTHIFFTICNYILLCAASSCIFLTLSLRLFPSLCGFFVVLLHMFTIIS 65

Query: 68  AVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVI 127
           AVS  SVA S SNK YAAHM++T LT IFQGSVS+LIF  T DFLGYLKSYVREEDGAVI
Sbjct: 66  AVSGCSVALSGSNKWYAAHMISTSLTAIFQGSVSILIFTQTGDFLGYLKSYVREEDGAVI 125

Query: 128 LKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAAGASR---FQEEDSKAWSRPFQ 184
           LKLAG L +LIF LEWVVL L FLLRY+AF +G+ SGA    R    QEE+ K W  P Q
Sbjct: 126 LKLAGGLCLLIFCLEWVVLVLAFLLRYYAFAEGNGSGAGSFDRNGKVQEEELKNWPWPLQ 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101255|ref|XP_002312204.1| predicted protein [Populus trichocarpa] gi|118483634|gb|ABK93711.1| unknown [Populus trichocarpa] gi|222852024|gb|EEE89571.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/191 (62%), Positives = 140/191 (73%), Gaps = 6/191 (3%)

Query: 1   MGVSFNINPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILL 60
           MG S  +  ++SS +++H   HK+ L  NYILL A+SS IFLTLSLRL PS+ GFFLILL
Sbjct: 1   MGASITLGGANSSVSQSHYHTHKVFLFCNYILLGAASSCIFLTLSLRLVPSVCGFFLILL 60

Query: 61  HVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVR 120
           HV TI+ AVS  + A+S +NK YAAHMVATVLT IFQGSVSVLIF  T  FLG LKSYVR
Sbjct: 61  HVFTIVGAVSGCAAASSGTNKWYAAHMVATVLTAIFQGSVSVLIFTRTGGFLGNLKSYVR 120

Query: 121 EEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDG-SNSGAAGASRF-----QEE 174
           EEDG VILKLAG L V+IF LEWVVL L F L+Y+A+V+G +N G   A+R      Q+E
Sbjct: 121 EEDGEVILKLAGGLCVVIFCLEWVVLTLAFFLKYYAYVEGDANDGGNIATRRSAKVQQDE 180

Query: 175 DSKAWSRPFQV 185
           D K W  PFQV
Sbjct: 181 DLKDWPWPFQV 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109182|ref|XP_002315113.1| predicted protein [Populus trichocarpa] gi|222864153|gb|EEF01284.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 140/191 (73%), Gaps = 6/191 (3%)

Query: 1   MGVSFNINPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILL 60
           MG S  +  ++SS +++H   H++ L  NYILL A+SS IFLTLSLRL PS+ GFFLILL
Sbjct: 1   MGASITLGSTNSSVSQSHYHTHRVFLFCNYILLGAASSCIFLTLSLRLVPSICGFFLILL 60

Query: 61  HVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVR 120
           HV TI  AVS  + A+S +N+ YAAHMVATVLT IFQGSVSVLIF  T DFLG LKSYVR
Sbjct: 61  HVFTIAGAVSGCAAASSGTNRWYAAHMVATVLTAIFQGSVSVLIFTRTGDFLGNLKSYVR 120

Query: 121 EEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDG-SNSGAAGASRF-----QEE 174
           EEDG VILKLAG L V+IF LEWVVL L F L+Y+A+V+G +N+G   A R      Q+E
Sbjct: 121 EEDGDVILKLAGGLCVVIFCLEWVVLTLAFFLKYYAYVEGDANNGGDIAMRRSAKVQQDE 180

Query: 175 DSKAWSRPFQV 185
           D K W  PFQV
Sbjct: 181 DLKDWPWPFQV 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106645|dbj|BAJ53150.1| JHL23J11.5 [Jatropha curcas]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/182 (64%), Positives = 136/182 (74%), Gaps = 6/182 (3%)

Query: 10  SSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIAV 69
           ++ S +++H   HK+ L  NYILL A+SS IFLTLSLRL PS+ GFFLILLHVLTI+ AV
Sbjct: 8   NTHSISQSHHHTHKVFLFCNYILLGAASSCIFLTLSLRLVPSICGFFLILLHVLTIIGAV 67

Query: 70  SSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILK 129
           S  + A+S +N+ YAAHMVATVLT IFQGSVSVLIF  T DFLG LKSYVREEDG VILK
Sbjct: 68  SGCAAASSGTNRWYAAHMVATVLTAIFQGSVSVLIFTRTGDFLGQLKSYVREEDGEVILK 127

Query: 130 LAGALSVLIFFLEWVVLALTFLLRYHAFVDGSN-SGAAGASRF-----QEEDSKAWSRPF 183
           LAG L VL+F LEWVVL L F L+Y+A+V+G + SG   A R      QEED K W  PF
Sbjct: 128 LAGGLCVLVFCLEWVVLTLAFFLKYYAYVEGGDVSGGNTAMRRSAKVQQEEDLKDWPWPF 187

Query: 184 QV 185
           QV
Sbjct: 188 QV 189

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567776|ref|XP_002524866.1| conserved hypothetical protein [Ricinus communis] gi|223535829|gb|EEF37490.1| conserved hypothetical protein [Ricinus communis]

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 141/193 (73%), Gaps = 9/193 (4%)

Query: 1   MGVSFNINPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILL 60
           MGV F+ +  S S AE+H R HKL LI NYILL+A+SS IFLTLSLRLFPSL GFFLILL
Sbjct: 1   MGV-FHKHNQSCSVAESHKRLHKLFLICNYILLSAASSCIFLTLSLRLFPSLCGFFLILL 59

Query: 61  HVLTILIAVSSLSVATS-SSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYV 119
           H  TI+ A+S  SVATS +S+K YAAHMV T LT IFQGSVSVLIF  T DFLGYLKSYV
Sbjct: 60  HAFTIIGAISGCSVATSDTSSKLYAAHMVTTSLTAIFQGSVSVLIFTQTGDFLGYLKSYV 119

Query: 120 REEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSG------AAGASRFQE 173
           R+EDG VILKLAG L VLIF   WV   L FLLRY+AFV+G+ +G      A  AS +QE
Sbjct: 120 RQEDGEVILKLAGGLCVLIFCFLWVASTLAFLLRYYAFVEGNGTGNATVSTATNASVYQE 179

Query: 174 ED-SKAWSRPFQV 185
           E+  K W    QV
Sbjct: 180 EELKKNWPLHLQV 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547444|ref|XP_002514779.1| conserved hypothetical protein [Ricinus communis] gi|223545830|gb|EEF47333.1| conserved hypothetical protein [Ricinus communis]

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 118/185 (63%), Positives = 133/185 (71%), Gaps = 9/185 (4%)

Query: 8   NPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILI 67
           NP S S  ++H   HK+ L  NYILL A+SS IFLTLSLRL PS+ GFFLILLH+LTI  
Sbjct: 8   NPQSVS--QSHHHTHKVFLFCNYILLGAASSCIFLTLSLRLLPSICGFFLILLHILTIAG 65

Query: 68  AVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVI 127
           AVS  + A+S +N+ YAAHMVATVLT IFQGSVSVLIF  T DFLG LKSYVREEDG VI
Sbjct: 66  AVSGCAAASSGTNRWYAAHMVATVLTAIFQGSVSVLIFTRTGDFLGQLKSYVREEDGEVI 125

Query: 128 LKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAAG-------ASRFQEEDSKAWS 180
           LKLAG L V+IF LEWVVL L F L+Y+A+V+G  S   G       A   QEED K W 
Sbjct: 126 LKLAGGLCVVIFCLEWVVLTLAFFLKYYAYVEGDVSSGGGNIGMRRSAKVQQEEDLKDWP 185

Query: 181 RPFQV 185
            PFQV
Sbjct: 186 WPFQV 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121768|ref|XP_002330648.1| predicted protein [Populus trichocarpa] gi|222872252|gb|EEF09383.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 125/166 (75%), Gaps = 1/166 (0%)

Query: 8   NPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILI 67
           N  S    E+H   HK  +I NYILL A+SS IFLTLSLRLFPS+ GFF+ILLHV+TI+ 
Sbjct: 6   NHKSCPVTESHHSLHKFFVICNYILLCAASSSIFLTLSLRLFPSVCGFFVILLHVVTIIA 65

Query: 68  AVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVI 127
           AVS  S   + SNK YAAHMV+T LT IFQGSVSVLIF  T DFLGYLKSYVRE+DGAVI
Sbjct: 66  AVSGCSATLTGSNKWYAAHMVSTSLTAIFQGSVSVLIFTQTGDFLGYLKSYVREDDGAVI 125

Query: 128 LKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAAGASRFQE 173
           LKLAG L +LIF LEWVVL L FLLRY+AFV+G N  +AG   F  
Sbjct: 126 LKLAGGLCLLIFCLEWVVLVLAFLLRYYAFVEG-NGNSAGDGSFDR 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507865|ref|XP_003624221.1| hypothetical protein MTR_7g080550 [Medicago truncatula] gi|355499236|gb|AES80439.1| hypothetical protein MTR_7g080550 [Medicago truncatula]

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 137/189 (72%), Gaps = 8/189 (4%)

Query: 1   MGVSFNINPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILL 60
           MG+S N NP ++     H   HKL L  NY+LL A+SS IFLTLSLRL PS+ GFFLILL
Sbjct: 1   MGLSMN-NPPAT-ITPRHYNIHKLFLFCNYVLLGAASSCIFLTLSLRLVPSVCGFFLILL 58

Query: 61  HVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVR 120
           H+ TI  AVS    A   +N+ Y+AHMVATVLT IFQGSVSVL+F  TSDFLG L+SYVR
Sbjct: 59  HIFTIAGAVSG--CAAVGANRWYSAHMVATVLTAIFQGSVSVLVFTRTSDFLGELQSYVR 116

Query: 121 EEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAA---GASRFQE-EDS 176
           EEDG+VILKL+G L++LIF LEWVVL L F L+Y+A V+G N+      G+++ Q+ ED 
Sbjct: 117 EEDGSVILKLSGGLAILIFCLEWVVLTLAFFLKYYACVEGGNTCRTVVLGSAKVQQDEDL 176

Query: 177 KAWSRPFQV 185
           K W  PFQV
Sbjct: 177 KDWPWPFQV 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497550|gb|AFK36841.1| unknown [Medicago truncatula]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 137/189 (72%), Gaps = 8/189 (4%)

Query: 1   MGVSFNINPSSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILL 60
           MG+S N NP ++     H   HKL L  NY+LL A+SS IFLTLSLRL PS+ GFFLILL
Sbjct: 1   MGLSMN-NPPAT-ITPRHYNIHKLFLFCNYVLLGAASSCIFLTLSLRLVPSVCGFFLILL 58

Query: 61  HVLTILIAVSSLSVATSSSNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVR 120
           H+ TI  AVS    A   +N+ Y+AHMVATVLT IFQGSVSVL+F  TSDFLG L+SYVR
Sbjct: 59  HIFTIAGAVSG--CAAVGANRWYSAHMVATVLTAIFQGSVSVLVFTRTSDFLGELQSYVR 116

Query: 121 EEDGAVILKLAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAA---GASRFQE-EDS 176
           EEDG+VILKL+G L++LIF LEWVVL L F L+Y+A V+G N+      G+++ Q+ ED 
Sbjct: 117 EEDGSVILKLSGGLAILIFCLEWVVLTLAFFLKYYACVEGGNTCRTVVLGSAKVQQDEDL 176

Query: 177 KAWSRPFQV 185
           K W  PFQV
Sbjct: 177 KDWPWPFQV 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2181447	183	AT5G16250 "AT5G16250" [Arabido	0.941	0.961	0.589	8.8e-47
TAIR|locus:2076849	185	AT3G02640 "AT3G02640" [Arabido	0.914	0.924	0.567	1.5e-44
TAIR|locus:2147376	183	AT5G36710 "AT5G36710" [Arabido	0.925	0.945	0.522	1.4e-39
TAIR|locus:2832155	183	AT5G36800 "AT5G36800" [Arabido	0.925	0.945	0.522	1.4e-39

TAIR|locus:2181447 AT5G16250 "AT5G16250" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 105/178 (58%), Positives = 122/178 (68%)

Query:    10 SSSSFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIXX 69
             SSS   E+H   HK+ L SNYILL A+SS IFLTLSLRL PS+ GF LILLH  TI    
Sbjct:     6 SSSPVEESHYHTHKIFLFSNYILLGAASSCIFLTLSLRLIPSICGFLLILLHATTIAAAV 65

Query:    70 XXXXXXXXXXNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILK 129
                       N+ YAAHMVATVLT IFQGSVSVLIF +TS FLG LKSYVREED AVILK
Sbjct:    66 SGCAAASCGRNRWYAAHMVATVLTAIFQGSVSVLIFTNTSKFLGSLKSYVREEDAAVILK 125

Query:   130 LAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAAGAS-RFQ-EEDSKAWSRPFQV 185
             L G L ++IF L+W+VL   F L+Y+A+VDG +  A   + + Q EE+ K W  PFQV
Sbjct:   126 LGGGLCIVIFCLDWIVLVCAFFLKYYAYVDGGDGVAMKRTGKVQSEENPKDWPWPFQV 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2076849 AT3G02640 "AT3G02640" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 101/178 (56%), Positives = 122/178 (68%)

Query:    13 SFAETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIXXXXX 72
             S  E+H   HKL L +NY+LL ASSS IFLTLSLRL PSL GFFLILLH  TI       
Sbjct:    10 SIQESHYYTHKLFLTANYVLLGASSSCIFLTLSLRLIPSLCGFFLILLHATTIAAAVSGC 69

Query:    73 XXXXXXXNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILKLAG 132
                    N+ YAAHM+ATVLT IFQGSVSVLIF +TS+FL  L SYVRE++ ++ILKLAG
Sbjct:    70 AAASYGKNRWYAAHMIATVLTAIFQGSVSVLIFTNTSNFLESLNSYVREKEASMILKLAG 129

Query:   133 ALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAA--GASRFQEEDS---KAWSRPFQV 185
              L V+IF LEW+VL L F L+Y+A+VDG N+G A     + Q E++     W+  FQV
Sbjct:   130 GLCVVIFCLEWIVLVLAFFLKYYAYVDGDNNGVAMKRTGKVQSEETLKNSPWA--FQV 185

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016572 "histone phosphorylation" evidence=RCA

TAIR|locus:2147376 AT5G36710 "AT5G36710" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 94/180 (52%), Positives = 116/180 (64%)

Query:    15 AETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIXXX---- 70
             +++    H + L+ NYILL ++SS IFLT+SLRLFPSL G  LI L+ LTI         
Sbjct:     4 SKSKGNTHNIFLLCNYILLGSASSCIFLTISLRLFPSLSGLSLIFLYTLTIATAVSGCSI 63

Query:    71 -XXXXXXXXXNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILK 129
                       ++ Y +HMVATVLT IFQG+VSVLIF  T DFL +LKSYVREEDG VILK
Sbjct:    64 FASSTSATASDRLYGSHMVATVLTAIFQGAVSVLIFTRTGDFLRFLKSYVREEDGEVILK 123

Query:   130 LAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAAGAS-RFQEEDSKAW-SRPFQVYV 187
             L+G L VL+F LEW+VL L FLL+Y  ++D S         R QEED K W S PFQ+ +
Sbjct:   124 LSGGLCVLMFCLEWIVLVLAFLLKYSDYLDESVVDDDDFKVRRQEEDLKDWPSYPFQLKI 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2832155 AT5G36800 "AT5G36800" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 94/180 (52%), Positives = 116/180 (64%)

Query:    15 AETHSRKHKLLLISNYILLAASSSFIFLTLSLRLFPSLVGFFLILLHVLTILIXXX---- 70
             +++    H + L+ NYILL ++SS IFLT+SLRLFPSL G  LI L+ LTI         
Sbjct:     4 SKSKGNTHNIFLLCNYILLGSASSCIFLTISLRLFPSLSGLSLIFLYTLTIATAVSGCSI 63

Query:    71 -XXXXXXXXXNKCYAAHMVATVLTGIFQGSVSVLIFASTSDFLGYLKSYVREEDGAVILK 129
                       ++ Y +HMVATVLT IFQG+VSVLIF  T DFL +LKSYVREEDG VILK
Sbjct:    64 FASSTSATASDRLYGSHMVATVLTAIFQGAVSVLIFTRTGDFLRFLKSYVREEDGEVILK 123

Query:   130 LAGALSVLIFFLEWVVLALTFLLRYHAFVDGSNSGAAGAS-RFQEEDSKAW-SRPFQVYV 187
             L+G L VL+F LEW+VL L FLL+Y  ++D S         R QEED K W S PFQ+ +
Sbjct:   124 LSGGLCVLMFCLEWIVLVLAFLLKYSDYLDESVVDDDDFKVRRQEEDLKDWPSYPFQLKI 183


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.139   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       175   0.00078  109 3  11 22  0.44    31
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  142 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.72u 0.15s 15.87t   Elapsed:  00:00:00
  Total cpu time:  15.72u 0.15s 15.87t   Elapsed:  00:00:00
  Start:  Fri May 10 14:13:37 2013   End:  Fri May 10 14:13:37 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG3882	237	consensus Tetraspanin family integral membrane pro	95.75
PF00335	221	Tetraspannin: Tetraspanin family RDS_ROM1 subfamil	95.6

>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]

Probab=95.75  E-value=0.023  Score=46.23  Aligned_cols=97  Identities=14%  Similarity=0.114  Sum_probs=75.7

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHhhhhcccc-----------hhHHHHHHHHHHHHHHHhhcCcccccCCCchHHHHHH
Q 040328           20 RKHKLLLISNYILLAASSSFIFLTLSLRLFPS-----------LVGFFLILLHVLTILIAVSSLSVATSSSNKCYAAHMV   88 (187)
Q Consensus        20 ~t~k~fl~~NYilL~aAsscIfltLsLRL~PS-----------~~G~~lIllhalTi~~avsGCs~~~~~~~~~ytaHmv   88 (187)
                      -.+..+.+.|++..-.+...+.+.+-+|..++           ...+.+|.+.+..++.+..||-++--.+......-++
T Consensus         8 ~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~   87 (237)
T KOG3882|consen    8 CLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYFI   87 (237)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHH
Confidence            45667888999999888888887777776654           5788999999999999999987664333345566777


Q ss_pred             HHHHHHHhhcceeheehhhhhhHHhhhc
Q 040328           89 ATVLTGIFQGSVSVLIFASTSDFLGYLK  116 (187)
Q Consensus        89 ~t~LTaIfqGs~svliFtrt~dfl~~LK  116 (187)
                      ...+--|.|.+.+++.|+..+.+.++++
T Consensus        88 ~l~l~~i~e~~~~i~~~~~~~~l~~~~~  115 (237)
T KOG3882|consen   88 LLLLLFIAELAAGILAFVFRDSLRDELE  115 (237)
T ss_pred             HHHHHHHHHHHHHHHhheeHHHHHHHHH
Confidence            8888889999999999977666666554

>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []

Probab=95.60  E-value=0.0041  Score=46.39  Aligned_cols=95  Identities=18%  Similarity=0.217  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHhhhh-----------cccchhHHHHHHHHHHHHHHHhhcCcccccCCCchHHHHHHHH
Q 040328           22 HKLLLISNYILLAASSSFIFLTLSLR-----------LFPSLVGFFLILLHVLTILIAVSSLSVATSSSNKCYAAHMVAT   90 (187)
Q Consensus        22 ~k~fl~~NYilL~aAsscIfltLsLR-----------L~PS~~G~~lIllhalTi~~avsGCs~~~~~~~~~ytaHmv~t   90 (187)
                      +.++.+.|.+.+..+...+.+...++           ..++...++++.+..+.++.++.||.++.......-..|.+..
T Consensus         3 k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~   82 (221)
T PF00335_consen    3 KYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYIILL   82 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccch
Confidence            56677888888777766555555552           2345667788879999998999998776533445578899999


Q ss_pred             HHHHHhhcceeheehhhhhhHHhhhc
Q 040328           91 VLTGIFQGSVSVLIFASTSDFLGYLK  116 (187)
Q Consensus        91 ~LTaIfqGs~svliFtrt~dfl~~LK  116 (187)
                      .+..+.|..+++..+..+++..+.++
T Consensus        83 ~~~~v~~~~~~i~~~~~~~~~~~~~~  108 (221)
T PF00335_consen   83 ILLFVLELVVGIVAFSYRDQLNSSLK  108 (221)
T ss_dssp             -----------------HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhcccccccccc
Confidence            99999999999999998888887665

CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00