Citrus Sinensis ID: 040346

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MDTLSSSVSTFKFAALHSTPRELHNFKAPPNTSQSHHQFHPHQSHLSSTRPNKTAASFTRRSFSNSYPSLTSSSGTSTPKSASPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPSYP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEccccccccccccHHHEEccccccccccccccccccccccccccccHHHHcccccHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEcccHHHHHHHHHHHHHHHcccEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mdtlsssvSTFKFAalhstprelhnfkappntsqshhqfhphqshlsstrpnktaasftrrsfsnsypsltsssgtstpksaspnshqkpasGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQavcadpfvgdkdkGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLiqegvpsyp
Flexible Loop (DISEMBL)
mdtlsssvSTFKFAALHSTPRELHNFKAPPNTSQSHHQFHPhqshlsstrpNKTAASFTRRSFSNSYPSLTSSSGTSTPKSASPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQiqavcadpfvgdkDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRnliqegvpsyp
Low Complexity Region (SEG)
MDTLSSSVSTFKFAALHSTPRELHNFKAPPNTsqshhqfhphqshlssTRPNKTAASFTRRsfsnsypsltsssgtstpksaspNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPSYP
Disordered region (IsUnstruct)
*********************************************************************************************YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQ*******
Disordered Region (DISOPRED)
*****SSVSTFKFAALHSTPRE***********************************************************************YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS**
Disordered Region (DISEMBL)
*********TFKFAALHSTPRELHNFKA***************************************************************SGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPSYP
Disordered Region (DISPRO)
******SVSTFKFAALHSTPRELHNFKA*********************************************************S*QKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPSYP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTLSSSVSTFKFAALHSTPRELHNFKAPPNTSQSHHQFHPHQSHLSSTRPNKTAASFTRRSFSNSYPSLTSSSGTSTPKSASPNSHQKPASGYAAALLDKALCHSSxxxxxxxxxxxxxxxxxxxxxAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPSYP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
P11402	257	ATP synthase delta chain,	N/A	no	0.675	0.622	0.320	1e-19
P32980	248	ATP synthase delta chain,	N/A	no	0.594	0.568	0.319	8e-18
Q02758	251	ATP synthase delta chain,	N/A	no	0.548	0.517	0.3	2e-13
Q07300	247	ATP synthase delta chain,	N/A	no	0.578	0.554	0.255	2e-12
Q42687	219	ATP synthase delta chain,	N/A	no	0.573	0.621	0.306	1e-11
Q11YP2	182	ATP synthase subunit delt	yes	no	0.493	0.642	0.319	7e-08
A3PEU0	180	ATP synthase subunit delt	yes	no	0.578	0.761	0.274	5e-07
Q8DLP4	185	ATP synthase subunit delt	yes	no	0.552	0.708	0.255	1e-06
Q7V036	180	ATP synthase subunit delt	yes	no	0.578	0.761	0.267	1e-06
Q65DX1	184	ATP synthase subunit delt	yes	no	0.556	0.717	0.259	3e-06

>sp|P11402|ATPD_SPIOL ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 70  LTSSSGTSTPKSASPNSHQ--KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQI 127
           LT+S  T+ P+  +  +      AS YA+AL D A    +LEA   DV KL R+   E +
Sbjct: 52  LTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPV 111

Query: 128 QAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDD 187
               A+P +   +K  ++ E++++  +  + A  + +LI+  ++ +V ++L EF+ +++ 
Sbjct: 112 YYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNK 171

Query: 188 LIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 229
           + GT V  V+S  K+E D L  IAK VQ + GA  V+I+ +I
Sbjct: 172 ITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVI 213

This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction.
Spinacia oleracea (taxid: 3562)

>sp|P32980|ATPD_TOBAC ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1

 Score = 90.5 bits (223), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 83/141 (58%)

Query: 91  ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLS 150
           A  YA AL D A  + +LE    D+ K+ ++  +E +      P VG++ K ++V E++S
Sbjct: 66  AGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVS 125

Query: 151 SWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI 210
           S  +  ++A  L +L++  +V ++ ++++EF+++Y+ L  T +  V+S  K+E   L  I
Sbjct: 126 SSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQI 185

Query: 211 AKRVQNLCGAAQVKIRNLIQE 231
           AK VQ L G+  V+I+ +I E
Sbjct: 186 AKGVQRLTGSKNVRIKTVIDE 206

This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction.

Nicotiana tabacum (taxid: 4097)

>sp|Q02758|ATPD_PEA ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 74/130 (56%)

Query: 100 DKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLA 159
           D A  +++L+A+  D  K+ +L  + ++    + P V D  K Q++ E  ++     +  
Sbjct: 78  DLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLIGEFATTSGFQPHTH 137

Query: 160 ALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG 219
             L +LI+  ++ M+ D+++EF+ +Y+ L  T +V V+S  K+E   L  IAK+VQ L G
Sbjct: 138 NFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLESHHLAQIAKQVQKLTG 197

Query: 220 AAQVKIRNLI 229
           A +V+ + L+
Sbjct: 198 AKKVRTKTLL 207

This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction.

Pisum sativum (taxid: 3888)

>sp|Q07300|ATPD_SORBI ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 78/137 (56%)

Query: 91  ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLS 150
           A  YA+AL + A+ + +LE    D+ KL ++  +E +     +P V  ++K  ++ E+  
Sbjct: 65  ADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPTVPREEKTALIDEIAK 124

Query: 151 SWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI 210
           S+++  ++   + ++++  +  ++ +++ EF+ I++ L GT V  V+S  ++E   L  I
Sbjct: 125 SYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVATVTSVVQLESQDLAQI 184

Query: 211 AKRVQNLCGAAQVKIRN 227
           A+ VQ + GA  V+++ 
Sbjct: 185 AQHVQKMTGAKNVRLKT 201

This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction.

Sorghum bicolor (taxid: 4558)

>sp|Q42687|ATPD_CHLRE ATP synthase delta chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPD PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 80/137 (58%), Gaps = 1/137 (0%)

Query: 94  YAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSW 152
           YA AL++ A     LEAV  DV  ++ L+K N ++ A+  +P V    K  ++ ++    
Sbjct: 42  YAKALVELADEKGKLEAVHADVDAVAGLMKENAKLSALIMNPVVESDKKRAVLAKIAKEA 101

Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
               Y    L +L+E++++++V ++ E F+ +Y  +  T+V  + SA K+E++Q F IAK
Sbjct: 102 GFQQYTINWLNLLVEKDRLSLVPEICECFEDLYCQMTDTQVATLRSAVKLEQEQQFLIAK 161

Query: 213 RVQNLCGAAQVKIRNLI 229
           ++Q L G+  +K++ +I
Sbjct: 162 KLQELTGSKNIKLKPVI 178

This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q11YP2|ATPD_CYTH3 ATP synthase subunit delta OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=atpH PE=3 SV=1

 Score = 57.8 bits (138), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 89  KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKE 147
           + A  YA +L+D A  +  L+ V  D+  +  + K N Q+ AV  +P V   DK   + E
Sbjct: 5   RVAYRYAKSLIDLAAENGVLDRVNADMAGIESVFKQNHQLVAVMKNPIV-QGDKKHAILE 63

Query: 148 LLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQ 206
            L   KV+++  +LL +L ++++ A+V ++  EFQR Y + +G ++V V++ + + EDQ
Sbjct: 64  ALFGGKVDNFTMSLLSLLTKKHREAVVFEISSEFQRQYREKMGIKIVEVTTTQPITEDQ 122

This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) (taxid: 269798)

>sp|A3PEU0|ATPD_PROM0 ATP synthase subunit delta OS=Prochlorococcus marinus (strain MIT 9301) GN=atpH PE=3 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 85  NSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQ 143
           NS   P   YA ALL     +S  E +  +V +L  L+ N  +++   + P +    K +
Sbjct: 5   NSVTTP---YAEALLQVVNENSQTEEMVSEVKQLLELINNSPELEKALSSPILETDAKKK 61

Query: 144 IVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKME 203
           I+ E+ S  KVNS L   L++L +R ++ +++ +L+ F  IY +     +  V+SA ++ 
Sbjct: 62  IINEIFSK-KVNSSLLNFLKLLADRQRIGILTSILDRFLEIYRENSNIALATVTSAVELT 120

Query: 204 EDQLFHIAKRVQNLCGAAQVKI 225
           ++Q   I K++ N+ G  ++++
Sbjct: 121 DEQKGLITKKIINIAGTEKLEL 142

This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

Prochlorococcus marinus (strain MIT 9301) (taxid: 167546)

>sp|Q8DLP4|ATPD_THEEB ATP synthase subunit delta OS=Thermosynechococcus elongatus (strain BP-1) GN=atpH PE=3 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 74/133 (55%), Gaps = 2/133 (1%)

Query: 94  YAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQIVKELLSSW 152
           YA ALL  A  H+ ++  Q+D   +  L+ +  ++Q   A+P +  + K  ++++L +  
Sbjct: 14  YAEALLSLAQTHNLIDQFQQDTQLMVELVASSGELQQFLANPLIKPEAKKNVLRQL-TVD 72

Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
           KV+ Y    L +L++R ++  +S + E ++ +   L    +  V+SA ++ +DQ   + +
Sbjct: 73  KVHGYFLNFLMLLVDRRRINFLSSICEHYRALVRKLRNVALAEVTSAVELNDDQRRAVVE 132

Query: 213 RVQNLCGAAQVKI 225
           +V+ + GAA V++
Sbjct: 133 KVKTMTGAADVEL 145

This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|Q7V036|ATPD_PROMP ATP synthase subunit delta OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=atpH PE=3 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 85  NSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQ 143
           NS   P   YA ALL     +   E + ++V +L  L+ +   ++   + P +    K +
Sbjct: 5   NSVTTP---YAEALLQVVSENDQTEEMVKEVKQLLSLINDSPDLEKTLSSPVLETDTKKK 61

Query: 144 IVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKME 203
           I+ E+ S  K+NS L   L++L +R ++ +V+ +L+ F  IY +     +  V+SA ++ 
Sbjct: 62  IIIEIFSE-KINSSLLNFLKLLADRQRIGIVTSILDRFLEIYRENSNIALATVTSAVELT 120

Query: 204 EDQLFHIAKRVQNLCGAAQVKI 225
           +DQ   I K++ N+ G  ++++
Sbjct: 121 DDQKGLITKKIINIAGTEKLEL 142

This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

>sp|Q65DX1|ATPD_BACLD ATP synthase subunit delta OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=atpH PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 76/135 (56%), Gaps = 3/135 (2%)

Query: 94  YAAALLDKALCHSSLEAVQRDVLKLSRL-LKNEQIQAVCADPFVGDKDKGQIVKELLSSW 152
           YAAAL D AL    +  ++ ++  + ++ ++++ + AV   P V  + K QI+K+   S 
Sbjct: 10  YAAALFDIALESKLVNEIEEELTVVKKIFIEHKDLNAVLGHPKVPAEKKKQILKDSFGS- 68

Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
            V++ +   L +L++R++ ++V D+ +E+ ++ +   GT    V S K + E+++   ++
Sbjct: 69  -VSTAVLHTLYLLVDRSRTSIVPDLADEYVKMANRFRGTEDAIVYSVKPLSEEEISSFSQ 127

Query: 213 RVQNLCGAAQVKIRN 227
                 GAA +++RN
Sbjct: 128 VFAKEAGAASLRVRN 142

This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255564597	227	ATP synthase delta chain, putative [Rici	0.945	0.986	0.514	2e-57
224130616	275	predicted protein [Populus trichocarpa]	0.978	0.843	0.523	1e-52
449433016	227	PREDICTED: ATP synthase delta chain, chl	0.907	0.947	0.405	2e-37
357512577	225	ATP synthase delta chain [Medicago trunc	0.902	0.951	0.390	3e-34
351724173	218	uncharacterized protein LOC100526851 [Gl	0.894	0.972	0.412	3e-30
388513413	240	unknown [Lotus japonicus]	0.957	0.945	0.376	3e-26
170098	257	ATP synthase delta subunit precursor [Sp	0.675	0.622	0.320	4e-18
114584	257	RecName: Full=ATP synthase delta chain,	0.675	0.622	0.320	6e-18
294460071	280	unknown [Picea sitchensis]	0.527	0.446	0.368	1e-16
224145221	252	predicted protein [Populus trichocarpa]	0.708	0.666	0.321	2e-16

>gi|255564597|ref|XP_002523293.1| ATP synthase delta chain, putative [Ricinus communis] gi|223537381|gb|EEF39009.1| ATP synthase delta chain, putative [Ricinus communis]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 121/235 (51%), Positives = 162/235 (68%), Gaps = 11/235 (4%)

Query: 1   MDTLSSSVSTFKFAALHSTPRELHNFKAPPNTSQSHHQFHPHQSHLSSTRPNKTAASFTR 60
           MDTLS+SVST K  ALHS PR+ ++FK P     +  Q  P  +H + T+PN    S + 
Sbjct: 1   MDTLSNSVSTLKLPALHSKPRQFYHFKTP----SASQQLPP--THFT-TKPN----SISN 49

Query: 61  RSFSNSYPSLTSSSGTSTPKSASPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSR 120
           R+ +    SL S + + +     PN+HQ PA+GYAAALLD A  ++SLE V++DV +LS+
Sbjct: 50  RNTNIQILSLKSLTNSPSFLKPPPNTHQNPATGYAAALLDIAQFNNSLETVEKDVKRLSK 109

Query: 121 LLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEE 180
           LL+NEQIQ +  +P VGDK+KG ++KE+    K NS L  LL MLIERNK+ +V++VL E
Sbjct: 110 LLRNEQIQCILINPLVGDKEKGLVLKEVGKKGKFNSILVRLLTMLIERNKIMIVNEVLVE 169

Query: 181 FQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS 235
           FQRI+D+L GT+VV VSS KKMEED LF IA+ VQ   GA +VK+RNL+ E +PS
Sbjct: 170 FQRIFDELSGTKVVLVSSKKKMEEDALFRIAQSVQKFSGAVKVKVRNLVDEKLPS 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130616|ref|XP_002320885.1| predicted protein [Populus trichocarpa] gi|222861658|gb|EEE99200.1| predicted protein [Populus trichocarpa]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/237 (52%), Positives = 157/237 (66%), Gaps = 5/237 (2%)

Query: 1   MDTLSSSVSTFKFAALHSTPRELHNFKAPPNTSQSHHQFHPH-QSHLSSTRPNKTAASFT 59
           MDT+SSS+ST K  A  ST  EL + + P       HQ  P+  +  +S+  N+T +   
Sbjct: 41  MDTISSSISTLKGPAFLSTLPELQHLRTP----HVSHQLPPNLTTKPTSSISNRTPSKTK 96

Query: 60  RRSFSNSYPSLTSSSGTSTPKSASPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLS 119
             SF N    L S+   S+  ++SP+SH+ P SGYAAAL+D A C SSL+ VQ DV KL 
Sbjct: 97  TLSFKNLNLPLFSNISQSSSHNSSPHSHRNPVSGYAAALVDIARCKSSLDIVQNDVQKLL 156

Query: 120 RLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLE 179
           +LL+NEQIQAV   PFVGDK+KGQ+VKE+    K N YL  L++MLI+RNKV +VSDVL 
Sbjct: 157 KLLQNEQIQAVLGSPFVGDKEKGQVVKEVAKRGKFNRYLVGLVKMLIDRNKVMIVSDVLM 216

Query: 180 EFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPSY 236
           EF+ I D+L GTRVV V S KKMEEDQLF IAK VQNL GA  VK++N   E  P++
Sbjct: 217 EFESICDELSGTRVVLVPSPKKMEEDQLFWIAKTVQNLTGAMNVKVKNFFDEKFPAF 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433016|ref|XP_004134294.1| PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus] gi|449478221|ref|XP_004155254.1| PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 142/222 (63%), Gaps = 7/222 (3%)

Query: 18  STPRELHNFKAPPNTSQSHHQF----HPHQSHLSSTRPNKTAASFTRR-SFSNSYPSLTS 72
           +TP      + P  T  S   F    +P  +HL    P++T+ S ++  +F ++  +L  
Sbjct: 5   TTPSVSSALRVPSRTLTSSRDFLHLKNP-TAHLPHRSPSRTSNSISKPPNFLSTPQTLNP 63

Query: 73  SSGTSTPK-SASPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVC 131
           S   STP+ S+SP  H++PASGYAAALLD +    ++ +V +DV + S+LL+ ++I  V 
Sbjct: 64  SIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIGRVL 123

Query: 132 ADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGT 191
            DP VGD++KG++VKE+         +  L +MLIE++K++++++V  EF+R+YD+L GT
Sbjct: 124 NDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDELCGT 183

Query: 192 RVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGV 233
            VV VSS+KKMEE++L  IAK VQ L GA +VK+R+ I  G+
Sbjct: 184 EVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGL 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512577|ref|XP_003626577.1| ATP synthase delta chain [Medicago truncatula] gi|355501592|gb|AES82795.1| ATP synthase delta chain [Medicago truncatula]

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 29/243 (11%)

Query: 1   MDTLSSSVSTFKFAALHSTPRELHNFKAPPNTSQSHHQFHPHQSHLSSTRPNKTAASFTR 60
           MDT SSSVST K     +T RE ++F   P+++ +  +    +SH SS    +   +F  
Sbjct: 1   MDTFSSSVSTLKIPL--TTNREFYHFTRTPHSTANPSRPPQPKSHFSSNLVTQKTKTF-- 56

Query: 61  RSFSNSYPSLTSSSGTSTPKSASPNS----HQKPASGYAAALLDKALCHSSLEAVQRDVL 116
            S +N  PSL        P    P+S    H KPA+GYAAA++D A   ++L +VQRDV 
Sbjct: 57  -SHNNHSPSL--------PLKHKPSSSQVFHHKPATGYAAAIIDVAQKTNTLHSVQRDVQ 107

Query: 117 KLSRLLKNEQIQA--VCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMV 174
           +L + L+  + Q+  V  DP         +V++++   K   ++ AL++ML+++NK+ +V
Sbjct: 108 RLLKFLQKLKFQSDDVGVDP--------SLVRKVVEQRKFEGHVVALVKMLMKKNKLGIV 159

Query: 175 SDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP 234
            +VLEEF RIYD+L GT+VV VSS +++ ED++F IAK VQ L GA +V ++NL+QE   
Sbjct: 160 EEVLEEFMRIYDELCGTQVVLVSSKREIGEDEMFGIAKSVQKLSGAVRVNVKNLVQE--E 217

Query: 235 SYP 237
           S+P
Sbjct: 218 SFP 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724173|ref|NP_001235001.1| uncharacterized protein LOC100526851 [Glycine max] gi|255630986|gb|ACU15857.1| unknown [Glycine max]

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 136/240 (56%), Gaps = 28/240 (11%)

Query: 1   MDTLSSSVSTFKFAALHS---TPRELHNFKAPPNTSQSHHQFHPHQSHLSSTRPNKTAAS 57
           MDTLSSSVST     L S   T R+ + FKA P  SQ   Q H      S++ PN    +
Sbjct: 1   MDTLSSSVSTLNVPPLPSSTFTNRDFYRFKASPTRSQQQQQHHV----FSTSTPNFLPKT 56

Query: 58  FTRRSFSNSYPSLTSSSGTST-PKSASPNSHQKPASGYAAALLDKALCHSSLEAVQRDVL 116
              ++FS+        S +   PK +SP  H  PA+GYAAAL+D A   +SL  V  DV 
Sbjct: 57  ---KTFSHKSSPSLPFSPSPLKPKPSSPTFHPNPATGYAAALVDVAHNSNSLHFVHSDVQ 113

Query: 117 KLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSD 176
           +L +LL+  + Q+   +                     + ++ ALL+ML+++NKV +V +
Sbjct: 114 RLLKLLQGAKFQSPAVE-----------------QGNFHRHVVALLKMLLKKNKVGVVKE 156

Query: 177 VLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPSY 236
           VL+EF+RIYD L GT++V VSS  KM EDQLF IAK V  L GA +VK+RNL+QE +PS+
Sbjct: 157 VLQEFERIYDRLCGTQMVLVSSKTKMREDQLFGIAKSVHQLSGAVRVKVRNLVQESMPSF 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513413|gb|AFK44768.1| unknown [Lotus japonicus]

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/247 (37%), Positives = 141/247 (57%), Gaps = 20/247 (8%)

Query: 1   MDTLSSSVS-TFKFAALHSTPRELHNFK----APPNTSQSHHQFHPHQSHLSSTRPN--- 52
           MD L++SVS T K +    T RE + F     APP          P Q H+SS  P    
Sbjct: 1   MDPLTTSVSSTLKISPFPPTNREFYYFTRTPYAPPT--------RPPQHHVSSA-PTVHN 51

Query: 53  ---KTAASFTRRSFSNSYPSLTSSSGTSTPKSASPNSHQKPASGYAAALLDKALCHSSLE 109
              K       +S S+  PS +++       S     H+ PA+GYAAA++D A   +SL 
Sbjct: 52  LIPKIKTLSHHKSSSSLAPSSSNTPPPKIKPSPPIIFHRNPATGYAAAVIDVAQSTNSLH 111

Query: 110 AVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERN 169
           +VQRDV +L +LL+    ++  ADP   ++ + Q +K +L     + ++  +L+ML+++N
Sbjct: 112 SVQRDVQRLLKLLQTVNFESFVADPSRIEEVRRQALKRVLEKGNFHRHVVTILKMLLKKN 171

Query: 170 KVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 229
           K+ +V  VL+EF+RIYD+L GT+VV VSS KKM ED+L  I K VQ + GA +VK++NL+
Sbjct: 172 KLGIVQQVLQEFERIYDELCGTQVVLVSSEKKMGEDELLGIVKSVQQMSGAVRVKVKNLV 231

Query: 230 QEGVPSY 236
            E + S+
Sbjct: 232 PESLASF 238

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|170098|gb|AAA34024.1| ATP synthase delta subunit precursor [Spinacia oleracea] gi|226262|prf||1503275A ATP synthase delta

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 70  LTSSSGTSTPKSASPNSHQ--KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQI 127
           LT+S  T+ P+  +  +      AS YA+AL D A    +LEA   DV KL R+   E +
Sbjct: 52  LTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPV 111

Query: 128 QAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDD 187
               A+P +   +K  ++ E++++  +  + A  + +LI+  ++ +V ++L EF+ +++ 
Sbjct: 112 YYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNK 171

Query: 188 LIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 229
           + GT V  V+S  K+E D L  IAK VQ + GA  V+I+ +I
Sbjct: 172 ITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVI 213

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114584|sp|P11402.2|ATPD_SPIOL RecName: Full=ATP synthase delta chain, chloroplastic; AltName: Full=F-ATPase delta chain; Flags: Precursor gi|21240|emb|CAA43634.1| unnamed protein product [Spinacia oleracea]

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 70  LTSSSGTSTPKSASPNSHQ--KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQI 127
           LT+S  T+ P+  +  +      AS YA+AL D A    +LEA   DV KL R+   E +
Sbjct: 52  LTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPV 111

Query: 128 QAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDD 187
               A+P +   +K  ++ E++++  +  + A  + +LI+  ++ +V ++L EF+ +++ 
Sbjct: 112 YYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNK 171

Query: 188 LIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 229
           + GT V  V+S  K+E D L  IAK VQ + GA  V+I+ +I
Sbjct: 172 ITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVI 213

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294460071|gb|ADE75618.1| unknown [Picea sitchensis]

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 78/125 (62%)

Query: 105 HSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRM 164
           ++ LE +  D+ KLS LLKN ++     +P   +  K  I+K +    K  +Y    L +
Sbjct: 110 NNMLEMINGDMEKLSHLLKNRELYDFLINPITENGKKKSILKSIADDAKFQTYTLNFLNL 169

Query: 165 LIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVK 224
           LI + K+ +V+++L+EF+ +Y++L  T+V FVSSA K+E  +L  IAK++Q+L GA  VK
Sbjct: 170 LISKQKIGIVNNILKEFESLYNELTDTQVAFVSSALKLENRELAQIAKKIQSLTGARNVK 229

Query: 225 IRNLI 229
           ++ +I
Sbjct: 230 LKCII 234

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145221|ref|XP_002325568.1| predicted protein [Populus trichocarpa] gi|222862443|gb|EEE99949.1| predicted protein [Populus trichocarpa]

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 6/174 (3%)

Query: 62  SFSNSYPSLTSSSGTSTPKSASPNS------HQKPASGYAAALLDKALCHSSLEAVQRDV 115
           SFS ++PSL  S+  +T       S          A  YA+AL D A+ +++L+A   D+
Sbjct: 35  SFSATFPSLNLSTTATTTNRRRGGSALGTKMSATAAGSYASALADVAISNNTLDATASDI 94

Query: 116 LKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVS 175
            K+ RL  N        +P +  + K Q+V E   S  +    A  + +LI+  +V +V 
Sbjct: 95  DKIERLFSNPAANDFFTNPTIDLEKKRQVVDEFAKSSALQPLTANFINILIDSKRVDLVK 154

Query: 176 DVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 229
           D++ EF+++Y+ L  T++  VSS   +E   L  IAK+VQ L GA  V+I+ +I
Sbjct: 155 DIVVEFEKVYNKLTDTQLAVVSSVVALESQHLAQIAKQVQKLTGAKNVRIKTVI 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2136922	234	ATPD "ATP synthase delta-subun	0.586	0.594	0.316	5.8e-18
UNIPROTKB|P27180	185	atpH "ATP synthase subunit del	0.590	0.756	0.260	6.6e-10
TAIR|locus:505006421	191	AT4G00895 [Arabidopsis thalian	0.784	0.973	0.247	6.6e-10
SGD|S000002706	212	ATP5 "Subunit 5 of the stator	0.578	0.646	0.239	3.4e-05
ZFIN|ZDB-GENE-050522-147	209	atp5o "ATP synthase, H+ transp	0.481	0.545	0.245	7.9e-05
UNIPROTKB|Q5RD23	213	ATP5O "ATP synthase subunit O,	0.548	0.610	0.223	0.00011
UNIPROTKB|P48047	213	ATP5O "ATP synthase subunit O,	0.548	0.610	0.223	0.00015
UNIPROTKB|B1MT69	213	ATP5O "ATP synthase subunit O,	0.548	0.610	0.207	0.00015
UNIPROTKB|B0VXH3	213	ATP5O "ATP synthase subunit O,	0.548	0.610	0.207	0.0002
UNIPROTKB|Q2EN81	213	ATP5O "ATP synthase subunit O,	0.548	0.610	0.207	0.00027

TAIR|locus:2136922 ATPD "ATP synthase delta-subunit gene" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 44/139 (31%), Positives = 85/139 (61%)

Query:    91 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLS 150
             AS YA AL D A  + ++E    D+ KL ++  + Q+    A+P +  + K Q++ +++ 
Sbjct:    52 ASSYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVK 111

Query:   151 SWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI 210
             S  + S+ +  L +L++ N++ +V+++++EF+ +Y+ L  T++  V S  K+E  QL  I
Sbjct:   112 SSSLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQI 171

Query:   211 AKRVQNLCGAAQVKIRNLI 229
             AK+VQ L GA  V+++ +I
Sbjct:   172 AKQVQKLTGAKNVRVKTVI 190

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009772 "photosynthetic electron transport in photosystem II" evidence=IMP

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA;IMP

GO:0015979 "photosynthesis" evidence=RCA;IMP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|P27180 atpH "ATP synthase subunit delta" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/142 (26%), Positives = 71/142 (50%)

Query:    89 KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQIVKE 147
             K A  YA AL+  A   +  E    ++  L  LL++   + AV + P V D+DK  +++ 
Sbjct:     9 KIAEPYAQALIGLAQQQNLTEVFGDNLRSLLTLLQDSPDLSAVLSSPVVKDEDKKSVLRS 68

Query:   148 LLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQL 207
             +L     N YL   L +L+++ ++  +  + E++  +      T +  V+SA K+ + Q 
Sbjct:    69 VLGDGG-NGYLLNFLMLLVDKRRIVFLEAICEQYLALLRQFTNTVLAEVTSALKLTDAQK 127

Query:   208 FHIAKRVQNLCGAAQVKIRNLI 229
               + +RV+ L GA  V++   +
Sbjct:   128 DQVKERVKQLTGAQAVELETKV 149

GO:0045260 "plasma membrane proton-transporting ATP synthase complex" evidence=IDA

TAIR|locus:505006421 AT4G00895 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 50/202 (24%), Positives = 84/202 (41%)

Query:     1 MDTLSSSVSTFKFAALHSTPRE-LHNFKAPPNTXXXXXXXXXXXXXXXXTRPNKTAASFT 59
             MDTLS+SVS+    +L   P+  L +  +   +                T  + ++AS++
Sbjct:     1 MDTLSASVSSLNLPSLPPPPQPPLRSISSRFKSTVNATTSASSTNLSKPTSSSPSSASYS 60

Query:    60 RRXXXXXXXXXXXXXXXXXXXXXXXNS----HQKPASGYAAALLDKALCHSSLEAVQRDV 115
             +                              H K ASG+AAAL+      + L   Q DV
Sbjct:    61 QNRNPNFLKAISFHLPQTKPSRVVTPPPPPVHDKAASGFAAALVSVCQSKNCLGRTQEDV 120

Query:   116 LKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNKVAMVS 175
              +L   L  E+            K    +V +++   K   +   L++MLI R K  ++ 
Sbjct:   121 RRLMEFLVGEE-----------KKRNKVLVNDVVERGKFGKHFKGLVKMLIARGKSGILV 169

Query:   176 DVLEEFQRIYDDLIGTRVVFVS 197
             DVL EF+RI ++L+  ++V+VS
Sbjct:   170 DVLMEFERICNELVSKKLVWVS 191

GO:0009507 "chloroplast" evidence=ISM

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

SGD|S000002706 ATP5 "Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 115 (45.5 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 34/142 (23%), Positives = 73/142 (51%)

Query:    94 YAAALLDKALCHSSLEAVQRDVLKL-SRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSW 152
             YA AL   A  +SS++A  + + K+ S + KN ++  +  +P +  KD+  ++  ++ + 
Sbjct:    36 YATALYQAAAKNSSIDAAFQSLQKVESTVKKNPKLGHLLLNPALSLKDRNSVIDAIVETH 95

Query:   153 K-VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIA 211
             K ++ Y+  LL++L E N++     +  +F  + D   G     V+SA+ ++      I 
Sbjct:    96 KNLDGYVVNLLKVLSENNRLGCFEKIASDFGVLNDAHNGLLKGTVTSAEPLDPKSFKRIE 155

Query:   212 KRVQ--NLCGAAQ-VKIRNLIQ 230
             K +    L G  + +K+ N+++
Sbjct:   156 KALSASKLVGQGKSLKLENVVK 177

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA;ISS;IDA;IMP

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;IMP

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM

GO:0000274 "mitochondrial proton-transporting ATP synthase, stator stalk" evidence=ISS;IMP

ZFIN|ZDB-GENE-050522-147 atp5o "ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit" [Danio rerio (taxid:7955)]

 Score = 112 (44.5 bits), Expect = 7.9e-05, P = 7.9e-05
 Identities = 28/114 (24%), Positives = 58/114 (50%)

Query:    94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
             YA AL   A    SL+ V++++ ++S L+K+ ++  +  +P V    K +   + L+  K
Sbjct:    38 YATALFSAASKQKSLDKVEQELGRVSSLIKDPKLSGIVMNPHVKRSVKQKTFVDALTKAK 97

Query:   154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQL 207
             V+     L+ +L E  ++ +  DV+  F ++     G     V++A+ ++E  L
Sbjct:    98 VSPITINLINVLSENGRLTLTPDVIAAFSKMMSAHRGEVTCSVTTAQPLDEASL 151

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|Q5RD23 ATP5O "ATP synthase subunit O, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 111 (44.1 bits), Expect = 0.00011, P = 0.00011
 Identities = 29/130 (22%), Positives = 63/130 (48%)

Query:    94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
             YA AL   A   + LE V++++L+++++LK  ++ A   +P+V    K + + ++ +  +
Sbjct:    41 YATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPYVKRSIKVKSLNDITAKER 100

Query:   154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKR 213
              +     L+ +L E  +++    V+  F  +     G     V+SA  +EE  L  +   
Sbjct:   101 FSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTV 160

Query:   214 VQNLCGAAQV 223
             +++     QV
Sbjct:   161 LKSFLSQGQV 170

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|P48047 ATP5O "ATP synthase subunit O, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
 Identities = 29/130 (22%), Positives = 63/130 (48%)

Query:    94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
             YA AL   A   + LE V++++L+++++LK  ++ A   +P+V    K + + ++ +  +
Sbjct:    41 YATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKER 100

Query:   154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKR 213
              +     L+ +L E  +++    V+  F  +     G     V+SA  +EE  L  +   
Sbjct:   101 FSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTV 160

Query:   214 VQNLCGAAQV 223
             +++     QV
Sbjct:   161 LKSFLSQGQV 170

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005496 "steroid binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006754 "ATP biosynthetic process" evidence=NAS

GO:0015992 "proton transport" evidence=NAS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IMP;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=NAS;IDA

GO:0008144 "drug binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0005215 "transporter activity" evidence=NAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|B1MT69 ATP5O "ATP synthase subunit O, mitochondrial" [Callicebus moloch (taxid:9523)]

 Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
 Identities = 27/130 (20%), Positives = 63/130 (48%)

Query:    94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
             YA AL   A     LE V++++L+++++LK  ++ A   +P+V    K + + ++++  +
Sbjct:    41 YATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPYVKHSVKVKSLSDIIAKER 100

Query:   154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKR 213
              +     L+ +L E  +++    V+  F  +     G     V++A  +EE  L  +   
Sbjct:   101 FSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTV 160

Query:   214 VQNLCGAAQV 223
             +++     Q+
Sbjct:   161 LKSFLSQGQI 170

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|B0VXH3 ATP5O "ATP synthase subunit O, mitochondrial" [Callithrix jacchus (taxid:9483)]

 Score = 109 (43.4 bits), Expect = 0.00020, P = 0.00020
 Identities = 27/130 (20%), Positives = 63/130 (48%)

Query:    94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
             YA AL   A     LE V++++L+++++LK  ++ A   +P+V    K + + ++++  +
Sbjct:    41 YATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPYVKHSIKVKSLSDIIAKER 100

Query:   154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKR 213
              +     L+ +L E  +++    V+  F  +     G     V++A  +EE  L  +   
Sbjct:   101 FSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPLEEATLSELKTV 160

Query:   214 VQNLCGAAQV 223
             +++     Q+
Sbjct:   161 LKSFLSQGQI 170

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|Q2EN81 ATP5O "ATP synthase subunit O, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
 Identities = 27/130 (20%), Positives = 64/130 (49%)

Query:    94 YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
             YA AL   A   + LE V++++L+++++LK  ++ A   +P+V    K + + ++ +  K
Sbjct:    41 YATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEK 100

Query:   154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKR 213
              +   + L+ +L E  +++    V+  F  +     G     V++A  ++E  L  +   
Sbjct:   101 FSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTV 160

Query:   214 VQNLCGAAQV 223
             +++     Q+
Sbjct:   161 LKSFLSKGQI 170

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
pfam00213	171	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	1e-20
COG0712	178	COG0712, AtpH, F0F1-type ATP synthase, delta subun	1e-18
PRK05758	177	PRK05758, PRK05758, F0F1 ATP synthase subunit delt	2e-17
TIGR01145	172	TIGR01145, ATP_synt_delta, ATP synthase, F1 delta	1e-13
PRK13429	181	PRK13429, PRK13429, F0F1 ATP synthase subunit delt	1e-12
CHL00119	184	CHL00119, atpD, ATP synthase CF1 delta subunit; Va	6e-09
PRK13436	179	PRK13436, PRK13436, F0F1 ATP synthase subunit delt	3e-06
PRK13434	184	PRK13434, PRK13434, F0F1 ATP synthase subunit delt	0.003

>gnl|CDD|215793 pfam00213, OSCP, ATP synthase delta (OSCP) subunit

 Score = 84.9 bits (211), Expect = 1e-20
 Identities = 34/138 (24%), Positives = 73/138 (52%), Gaps = 3/138 (2%)

Query: 91  ASGYAAALLDKALCHSSLEAVQRDVLKLSRLL-KNEQIQAVCADPFVGDKDKGQIVKELL 149
           A  YA AL + A    SL+ V+ D+  L  +L +N  ++   ++P +  ++K  ++K + 
Sbjct: 2   ARRYAKALFELAKEKGSLDEVEEDLEALKAVLAENPDLREFLSNPLISAEEKKALLKAVF 61

Query: 150 SSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFH 209
              K++      L++L E  +++++ ++ EEF+ +Y++  G     V+SA  + E+QL  
Sbjct: 62  GG-KLSELTKNFLKLLAENGRLSLLPEIAEEFEELYNEHRGIVEATVTSAVPLSEEQLKA 120

Query: 210 IAKRVQNLCGAAQVKIRN 227
           +   ++   G  +VK+  
Sbjct: 121 LKAALEKKTG-KKVKLET 137

The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401. Length = 171

>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 36/139 (25%), Positives = 74/139 (53%), Gaps = 3/139 (2%)

Query: 94  YAAALLDKALCHSSLEAVQRDVLKLSRLLKNE-QIQAVCADPFVGDKDKGQIVKELLSSW 152
           YA AL + A     LE V+ ++  L+ +LKN  +++ + + P V  +DK +++  +    
Sbjct: 11  YAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK- 69

Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
             +  L   LR+L E  ++ ++ ++LEEF ++  +  G     V+SA ++ ++QL  +  
Sbjct: 70  IGDPLLQNFLRLLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEA 129

Query: 213 RVQNLCGAAQVKIRNLIQE 231
           +++   G  +VK+ N I  
Sbjct: 130 KLEKKFG-KKVKLNNKIDP 147

Length = 178

>gnl|CDD|235593 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated

 Score = 76.7 bits (190), Expect = 2e-17
 Identities = 34/138 (24%), Positives = 73/138 (52%), Gaps = 3/138 (2%)

Query: 94  YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
           YA AL + AL   SL+A   ++  L+ + +NE + A+ + P V  + K +++  +  S  
Sbjct: 11  YAKALFEVALEKGSLDAWSEELTFLAEVAENEDLAALLSSPLVSAEQKKKLLAAVFKS-- 68

Query: 154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKR 213
           ++ Y+   L++L E  ++A++ ++LE+F+ +  +        V+SA  + E+QL  +   
Sbjct: 69  LSEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAA 128

Query: 214 VQNLCGAAQVKIRNLIQE 231
           ++   G  +VK+   +  
Sbjct: 129 LEKRLG-RKVKLNEKVDP 145

Length = 177

>gnl|CDD|130215 TIGR01145, ATP_synt_delta, ATP synthase, F1 delta subunit

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 40/142 (28%), Positives = 78/142 (54%), Gaps = 2/142 (1%)

Query: 91  ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKN-EQIQAVCADPFVGDKDKGQIVKELL 149
           A  YA AL + A   SSLE     +  +  +LKN ++++   ++P +  + K + +K + 
Sbjct: 2   ARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVF 61

Query: 150 SSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFH 209
              +++     LL +L E  ++A + D+L++F ++  +   T  V V SAK + EDQ   
Sbjct: 62  GE-QLDESSLNLLLLLAENGRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAK 120

Query: 210 IAKRVQNLCGAAQVKIRNLIQE 231
           IA++++ + GAA+VK+   + +
Sbjct: 121 IAEKLEKITGAAKVKLNCKVDK 142

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity [Energy metabolism, ATP-proton motive force interconversion]. Length = 172

>gnl|CDD|237386 PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 28/128 (21%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 94  YAAALLDKALCHSSLEAVQRDVLKLSRLL-KNEQIQAVCADPFVGDKDKGQIVKELLSSW 152
           YA AL   A     L++V  ++ +L+ LL  + +++   ++P +  ++K  ++++LL   
Sbjct: 10  YAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKL 69

Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
           KV+  +   L++L +R ++ ++ ++   +  + D+  G     V+SA  + E Q   I +
Sbjct: 70  KVSPEVLNFLKLLADRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQ 129

Query: 213 RVQNLCGA 220
           +++ + G 
Sbjct: 130 KLEKMTGK 137

Length = 181

>gnl|CDD|177042 CHL00119, atpD, ATP synthase CF1 delta subunit; Validated

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 29/138 (21%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 89  KPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQ-IQAVCADPFVGDKDKGQIVKE 147
           K A  YA ALL+ A   + +E +  D+  +   L     ++   A+P +    K +++K+
Sbjct: 7   KIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKK 66

Query: 148 LLSSWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQL 207
              S ++N      L +L++R ++A++  ++E++  +   L   ++  VS+A  +   Q 
Sbjct: 67  TFGS-QINENTLKFLMVLVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQE 125

Query: 208 FHIAKRVQNLCGAAQVKI 225
             + ++++ +  A ++K+
Sbjct: 126 EALIEKLKEMTNAKEIKL 143

Length = 184

>gnl|CDD|184053 PRK13436, PRK13436, F0F1 ATP synthase subunit delta; Provisional

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 29/138 (21%), Positives = 69/138 (50%), Gaps = 3/138 (2%)

Query: 93  GYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSS 151
            YA AL D A   +++E    +V K+  +LK N+ +  +    F+  ++K +I+ ++ S+
Sbjct: 10  NYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSA 69

Query: 152 WKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIA 211
            K++ YL   L++L + N    +  +L++F ++ ++ +      + + + + E Q+    
Sbjct: 70  -KIDIYLVNFLKILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFE 128

Query: 212 KRVQNLCGAAQVKIRNLI 229
            ++       +V + N I
Sbjct: 129 SKLSKKLN-KKVHLVNKI 145

Length = 179

>gnl|CDD|139571 PRK13434, PRK13434, F0F1 ATP synthase subunit delta; Provisional

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 94  YAAALLDKALCHSSLEAVQRDVLKLSRLL-KNEQIQAVCADPFVGDKDKGQIVKELLSSW 152
           YA+ALL  A   +S E V++++  L +LL K+E+I+     P V  ++K Q + + L   
Sbjct: 10  YASALLGAA---NSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLRG- 65

Query: 153 KVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAK 212
           K++      L +L+ + +   + ++ ++F    D   G     + S   +E  Q+  +  
Sbjct: 66  KISDITLNFLGVLLNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGS 125

Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	100.0
KOG1662	210	consensus Mitochondrial F1F0-ATP synthase, subunit	100.0
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	100.0
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	100.0
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	100.0
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	100.0
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	100.0
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	99.97
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	99.97
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	99.97
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	99.97
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	99.97
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	99.96
PRK13431	180	F0F1 ATP synthase subunit delta; Provisional	99.96
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	98.41
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	97.27
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	97.05
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	95.87
PRK06669	281	fliH flagellar assembly protein H; Validated	87.19

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=4.4e-35  Score=247.64  Aligned_cols=146  Identities=21%  Similarity=0.370  Sum_probs=143.0

Q ss_pred             chhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040346           88 QKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLI  166 (237)
Q Consensus        88 ~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLi  166 (237)
                      ..+|++||+|||++|.++|.+++|+++|..+.+++. +++|+.+|.||.++.++|.++++++|++ ++++.+.|||++|+
T Consensus         5 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~~-~~~~~~~nfl~ll~   83 (179)
T PRK13436          5 NKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSA-KIDIYLVNFLKILA   83 (179)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence            478999999999999999999999999999999998 9999999999999999999999999997 79999999999999


Q ss_pred             HcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346          167 ERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS  235 (237)
Q Consensus       167 e~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~  235 (237)
                      +++|+.+|++|+++|.++++++.|++.|+|+||.||+++|+++|.+.|++++| ++|+++++|||+|||
T Consensus        84 ~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~g-~~v~l~~~vDpslIG  151 (179)
T PRK13436         84 KNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKLN-KKVHLVNKIDPKLIA  151 (179)
T ss_pred             HCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHHC-CeEEEEeecCHHHcC
Confidence            99999999999999999999999999999999999999999999999999999 799999999999994

>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]

Probab=100.00  E-value=5.2e-35  Score=246.75  Aligned_cols=155  Identities=21%  Similarity=0.382  Sum_probs=151.5

Q ss_pred             CCCCCccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHH
Q 040346           81 SASPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLA  159 (237)
Q Consensus        81 ~~~p~~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~  159 (237)
                      .+||++..++.++||.|||++|..++++|.++.||+.+.++++ +|+|.+|+.||.++.++|..+|+++++..++.+.+.
T Consensus        24 v~pPVql~G~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~~~~~~~t~  103 (210)
T KOG1662|consen   24 VKPPVQLYGLEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEKLKLAPLTK  103 (210)
T ss_pred             CCCCeEEecccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHHHHHHHhcccHhHH
Confidence            7999999999999999999999999999999999999999999 999999999999999999999999999888999999


Q ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhC-CceeEEEeeeCCCCCC
Q 040346          160 ALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG-AAQVKIRNLIQEGVPS  235 (237)
Q Consensus       160 nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g-~k~V~L~~~VDpSLI~  235 (237)
                      |||.+|+||||+..+.+|+.+|..+++.++|.+.|+|+||.||++.|.++|++.|++++| ++++.++++|||||+|
T Consensus       104 NflnlLaeNgRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k~l~~~l~k~l~~gk~l~v~~~vdPSI~G  180 (210)
T KOG1662|consen  104 NFLNLLAENGRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLKQLEKALQKILGGGKKLKVENKVDPSIIG  180 (210)
T ss_pred             HHHHHHHHcCchhhHHHHHHHHHHHHHHhCCceEEEEEecccCChHHHHHHHHHHHHHhcCCceEEEEeecChhhhc
Confidence            999999999999999999999999999999999999999999999999999999999776 5779999999999994

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=1.1e-33  Score=239.82  Aligned_cols=144  Identities=19%  Similarity=0.265  Sum_probs=138.8

Q ss_pred             cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040346           87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRML  165 (237)
Q Consensus        87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lL  165 (237)
                      ...+|+|||+|||+   +.|.+++|.++|..+.+++. +++|+.+|.||.++.++|.++|.+++++ ++++.+.|||++|
T Consensus         3 ~~~va~rYA~AL~~---~~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~lL   78 (184)
T PRK13434          3 DSGVSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLRG-KISDITLNFLGVL   78 (184)
T ss_pred             chhhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHc-cCCHHHHHHHHHH
Confidence            35799999999999   56899999999999999887 9999999999999999999999999976 8999999999999


Q ss_pred             HHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346          166 IERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS  235 (237)
Q Consensus       166 ie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~  235 (237)
                      ++|+|+.+|++|+++|.+++++++|++.|+|+||.||+++|+++|++.|++++| ++|+++++|||+|||
T Consensus        79 ~e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g-~~v~l~~~vDpsLIG  147 (184)
T PRK13434         79 LNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKFK-SEFILEVSEDKNLLG  147 (184)
T ss_pred             HHCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHC-CEeEEEeeeChHHcC
Confidence            999999999999999999999999999999999999999999999999999999 899999999999994

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=100.00  E-value=9.6e-34  Score=239.60  Aligned_cols=148  Identities=24%  Similarity=0.409  Sum_probs=143.1

Q ss_pred             ccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040346           86 SHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRM  164 (237)
Q Consensus        86 ~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~l  164 (237)
                      ....+|++||+|||++|.|+|++++|+++|..+.++++ +|+|+++|.+|.++.++|.+++.++|++ ..++++.|||.+
T Consensus         3 ~~~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~l   81 (178)
T COG0712           3 ELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLRL   81 (178)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHHH
Confidence            45679999999999999999999999999999999999 7899999999999999999999999997 555999999999


Q ss_pred             HHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346          165 LIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS  235 (237)
Q Consensus       165 Lie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~  235 (237)
                      |++|+|+.++++|+++|..++++++|++.|+|+||.||+++|+++|.++|++++| ++|+++++|||||||
T Consensus        82 l~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~~-~~v~i~~~VD~sliG  151 (178)
T COG0712          82 LAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKFG-KKVKLNNKIDPSLIG  151 (178)
T ss_pred             HHHccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHHHHHHHHHHHhC-CCceEEeeeCHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999 899999999999995

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=100.00  E-value=5.4e-32  Score=228.19  Aligned_cols=143  Identities=17%  Similarity=0.306  Sum_probs=137.5

Q ss_pred             chhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040346           88 QKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIE  167 (237)
Q Consensus        88 ~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie  167 (237)
                      ..+|+|||+|||++|. +|.+++|.++|..+..++++++|+.+|.||.++.++|.+++++++++  .++.+.|||++|++
T Consensus         3 ~~va~~YA~ALf~~a~-~~~l~~v~~~l~~l~~~~~~~~l~~~l~~P~i~~~~K~~vi~~~~~~--~~~~~~nFL~vLi~   79 (176)
T PRK08474          3 ELIAKRYAKALLSSLS-SDELNDIYSNLKILSSAFADEKFKEIISSPEISKEQKIEFLLSFVDN--ANAKFQNFIKLLAE   79 (176)
T ss_pred             hhhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHCChhHHHHHhCCCCCHHHHHHHHHHHHhc--cCHHHHHHHHHHHH
Confidence            4689999999999985 79999999999999999999999999999999999999999999985  58999999999999


Q ss_pred             cCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC-CC
Q 040346          168 RNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP-SY  236 (237)
Q Consensus       168 ~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI-~~  236 (237)
                      |+|+.+|++|+++|.+++++.+|++.|+|+||.|||++|+++|++.|++++| ++|++++.|||  | ||
T Consensus        80 n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~~i~~~l~~~~g-~~v~l~~~vD~--IGG~  146 (176)
T PRK08474         80 NKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLKKLEEKLSKKFN-AKIKLKQKKSD--YDGI  146 (176)
T ss_pred             CChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHHHHHHHHHHHhC-CeEEEEEEEcC--CCCE
Confidence            9999999999999999999999999999999999999999999999999999 79999999999  6 54

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=100.00  E-value=4.4e-32  Score=229.99  Aligned_cols=149  Identities=19%  Similarity=0.362  Sum_probs=144.1

Q ss_pred             ccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040346           86 SHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRM  164 (237)
Q Consensus        86 ~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~l  164 (237)
                      ....+|++||+|||++|.++|.+++|.++|..+.++++ +++|+++|.||.++.++|.+++++++++ ++++.+.|||++
T Consensus         4 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~-~~~~~~~nfl~~   82 (184)
T CHL00119          4 LVSKIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGS-QINENTLKFLMV   82 (184)
T ss_pred             hHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccCHHHHHHHHH
Confidence            45679999999999999999999999999999999998 9999999999999999999999999987 899999999999


Q ss_pred             HHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346          165 LIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS  235 (237)
Q Consensus       165 Lie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~  235 (237)
                      |++|+|+.++++|+++|.+++++.+|++.|+|+||.||+++|+++|.+.|++++|.+++.+.++|||+|||
T Consensus        83 L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~~~~v~l~~~vD~~lig  153 (184)
T CHL00119         83 LVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTNAKEIKLVITVDPSLIG  153 (184)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCCeEEEEeeeChHHhC
Confidence            99999999999999999999999999999999999999999999999999999986689999999999994

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=100.00  E-value=1.1e-31  Score=225.01  Aligned_cols=145  Identities=28%  Similarity=0.402  Sum_probs=140.8

Q ss_pred             hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 040346           90 PASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIER  168 (237)
Q Consensus        90 iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~  168 (237)
                      +|++||+|||++|.+.|+++.|+++|..+.++++ +++|+++|.||.++.++|.++++++|++ ++++.+.|||++|+++
T Consensus         1 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~~-~~~~~~~nfl~~l~~~   79 (172)
T TIGR01145         1 VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE-QLDESSLNLLLLLAEN   79 (172)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHC
Confidence            5899999999999999999999999999999999 8999999999999999999999999987 8999999999999999


Q ss_pred             CccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346          169 NKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS  235 (237)
Q Consensus       169 ~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~  235 (237)
                      +|+.++++|+++|.+++++..|++.|+|+||.||+++|+++|.+.|++++|.++|++.++|||+|||
T Consensus        80 ~r~~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~v~~~~~vd~~lig  146 (172)
T TIGR01145        80 GRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKITGAAKVKLNCKVDKDLIG  146 (172)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHHHHHHHHHHHhCCCeEEEEEeECHHHhC
Confidence            9999999999999999999999999999999999999999999999999993399999999999994

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=99.97  E-value=7.9e-31  Score=221.12  Aligned_cols=148  Identities=20%  Similarity=0.388  Sum_probs=143.2

Q ss_pred             cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040346           87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRML  165 (237)
Q Consensus        87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lL  165 (237)
                      ...++++||+|||++|.++|++++|+++|..+.++++ +++|+.+|.||.++.++|.++|++++++.++++.+.|||++|
T Consensus         3 ~~~ia~~YA~AL~~~a~~~~~l~~~~~~l~~i~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l   82 (181)
T PRK13429          3 LNAIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLL   82 (181)
T ss_pred             cchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3578999999999999999999999999999999998 999999999999999999999999998744999999999999


Q ss_pred             HHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346          166 IERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS  235 (237)
Q Consensus       166 ie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~  235 (237)
                      ++++|+.++++|+++|.++++++.|++.|+|+||.||+++++++|.+.|++++| +.+.++++|||+|||
T Consensus        83 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~~l~~~L~~~~~-~~~~~~~~vd~slig  151 (181)
T PRK13429         83 ADRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQKLEKMTG-KKVELDTAVDPSLIG  151 (181)
T ss_pred             HHCCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHHHHHHHHHHHHC-CEEEEEeeeChhhhC
Confidence            999999999999999999999999999999999999999999999999999999 899999999999994

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=99.97  E-value=5.5e-31  Score=222.45  Aligned_cols=146  Identities=16%  Similarity=0.217  Sum_probs=138.1

Q ss_pred             cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Q 040346           87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLS--SWKVNSYLAALLRM  164 (237)
Q Consensus        87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~--~~~~s~~~~nFL~l  164 (237)
                      ...+|++||+|||++|.+.|.+++|.++|..+.++++  +++.+|.||.++.++|.++|+.+++  +.++++.+.|||++
T Consensus         3 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~--~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~v   80 (180)
T PRK13441          3 YSAIASKYARALLNVAIELEKEEEYGEFLDLVCQIYE--SAKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLNL   80 (180)
T ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence            4579999999999999999999999999999999998  3478999999999999999999974  22689999999999


Q ss_pred             HHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346          165 LIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS  235 (237)
Q Consensus       165 Lie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~  235 (237)
                      |++|+|+.+|++|+++|..++++++|++.|+|+||.||+++|+++|.+.|++++| ++|+++++|||+|||
T Consensus        81 L~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~~~~~~~i~~~l~k~~~-~~v~l~~~vD~sliG  150 (180)
T PRK13441         81 VFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEELKLLRKFVRKYVL-RDPVFEETIDESLIA  150 (180)
T ss_pred             HHHCChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCCHHHHHHHHHHHHHHHC-CcceEEeeeChHHhC
Confidence            9999999999999999999999999999999999999999999999999999999 899999999999994

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=99.97  E-value=6.3e-30  Score=229.07  Aligned_cols=156  Identities=19%  Similarity=0.285  Sum_probs=149.4

Q ss_pred             CCCCCCCC-ccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCC
Q 040346           78 TPKSASPN-SHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVN  155 (237)
Q Consensus        78 ~~~~~~p~-~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s  155 (237)
                      ..+|..|. ....+...+.+|||++|+++|.+++|++||..+.+++. +++|+.+|.||.++.++|.+++.++|++ +++
T Consensus        86 ~~rWs~~~dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~~-~~~  164 (271)
T PRK13430         86 RQRWSRPRDLADALEELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLYG-KVT  164 (271)
T ss_pred             HhhccCchhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCC
Confidence            45576665 56889999999999999999999999999999999998 9999999999999999999999999987 799


Q ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346          156 SYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS  235 (237)
Q Consensus       156 ~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~  235 (237)
                      +.+.||+.+|++++|+.++++|+++|.+++++++|++.|+|+||.||+++|+++|++.|+++|| ++|+++++|||+|||
T Consensus       165 ~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g-~~V~l~~~VDpsLIG  243 (271)
T PRK13430        165 PVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYG-RPVHLNSEVDPSVLG  243 (271)
T ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHC-CceEEEeeECccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999 899999999999995

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=99.97  E-value=1.3e-29  Score=212.93  Aligned_cols=146  Identities=23%  Similarity=0.374  Sum_probs=140.3

Q ss_pred             cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040346           87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRML  165 (237)
Q Consensus        87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lL  165 (237)
                      ...++++||+|||++|.++|.++.|+++|.. .+++. +++|+.+|.||.++.++|.++|++++++  .++.+.|||.+|
T Consensus         4 ~~~~a~~YA~AL~~~a~~~~~~~~v~~~l~~-~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~nfL~~l   80 (177)
T PRK05758          4 LSTVARPYAKALFEVALEKGSLDAWSEELTF-LAEVAENEDLAALLSSPLVSAEQKKKLLAAVFKS--LSEYVQNFLKVL   80 (177)
T ss_pred             chhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHH
Confidence            3578999999999999999999999999999 88887 9999999999999999999999999996  499999999999


Q ss_pred             HHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC-CC
Q 040346          166 IERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP-SY  236 (237)
Q Consensus       166 ie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI-~~  236 (237)
                      ++++|+.++++|+++|.+++++.+|++.|+|+||.||+++++++|.+.|++++| +++.+.++|||+|| ||
T Consensus        81 ~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~-~~v~l~~~vd~~ligG~  151 (177)
T PRK05758         81 AENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRLG-RKVKLNEKVDPSLIGGV  151 (177)
T ss_pred             HHCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHHHHHHHHHHHHC-CeeEEEeeEChHHhCce
Confidence            999999999999999999999999999999999999999999999999999999 78999999999999 54

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=99.97  E-value=4.4e-29  Score=237.19  Aligned_cols=157  Identities=17%  Similarity=0.212  Sum_probs=150.0

Q ss_pred             CCCCCCCCc-cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCC-CC
Q 040346           78 TPKSASPNS-HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSW-KV  154 (237)
Q Consensus        78 ~~~~~~p~~-~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~-~~  154 (237)
                      +.+|..|.. ..++.+.|++|||++|.++|.+++|+++|..+.+++. +|+|+.+|.||.++.++|.+++.++|++. ++
T Consensus       258 ~~rws~~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~~~el~~~L~~p~i~~~~K~~ll~~l~~~~~~~  337 (445)
T PRK13428        258 SQRWSANSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRILDAQPRLAILLSDYTVPADGRVALLRKVLGGASTV  337 (445)
T ss_pred             hCccCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHhccccC
Confidence            566887864 5789999999999999999999999999999999998 99999999999999999999999999853 58


Q ss_pred             CHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC
Q 040346          155 NSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP  234 (237)
Q Consensus       155 s~~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI  234 (237)
                      ++.+.|||.+|++++|+..+++|+..|.+++++++|++.|+|+||.||+++|+++|.+.|+++|| ++|+|+++|||+||
T Consensus       338 ~~~~~nfl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L~~~L~k~~g-~~V~l~~~VDpsLi  416 (445)
T PRK13428        338 NPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIYG-RPVSVQLHIDPELL  416 (445)
T ss_pred             CHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHHHHHHHHHHC-CceEEEeeeCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999 89999999999999


Q ss_pred             C
Q 040346          235 S  235 (237)
Q Consensus       235 ~  235 (237)
                      |
T Consensus       417 G  417 (445)
T PRK13428        417 G  417 (445)
T ss_pred             C
Confidence            5

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.96  E-value=5.6e-33  Score=231.94  Aligned_cols=146  Identities=23%  Similarity=0.449  Sum_probs=116.4

Q ss_pred             hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 040346           90 PASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIER  168 (237)
Q Consensus        90 iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~  168 (237)
                      ||++||+|||++|.++|.++.|.++|+.+.+++. +++|+.+|.+|.++.++|.+++++++++ ++++.+.|||++|+++
T Consensus         1 ia~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~-~~~~~~~nfL~~l~~~   79 (172)
T PF00213_consen    1 IAKRYAKALFELAKEEGKLDEVLEELQSLLEILKSNPELRKFLESPFIPKEEKKELLDEIFKG-KLSEETVNFLKLLIDN   79 (172)
T ss_dssp             HHHCHHHHHHHHCCCCTTHHHHHHHHHHH-HHHCCSCCCHHHHT-TTTTCCCCCCCCCHHCTT-T-SCCCCHHHHHHCCT
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHcCccccHHHHHHHHHHHHcc-cCCHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999998 9999999999999999999999999997 7999999999999999


Q ss_pred             CccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC-CC
Q 040346          169 NKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP-SY  236 (237)
Q Consensus       169 ~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI-~~  236 (237)
                      +|+.++++|+++|.+++++..|+..|+|+||.||+++|+++|++.+++++|.++|.+++.|||+|| ||
T Consensus        80 ~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l~~~l~~~~~~~~v~~~~~vD~sLigG~  148 (172)
T PF00213_consen   80 NRLSLLPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKLEKKLKKKYGKKKVELNYKVDPSLIGGF  148 (172)
T ss_dssp             T-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTTTTTCCCTTTT-----------------
T ss_pred             CCcccHHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHHHHHHHHHHCCCeeeEEEEEccccCcEE
Confidence            999999999999999999999999999999999999999999999999999448999999999999 54

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>PRK13431 F0F1 ATP synthase subunit delta; Provisional

Probab=99.96  E-value=1.1e-27  Score=202.88  Aligned_cols=138  Identities=22%  Similarity=0.246  Sum_probs=129.5

Q ss_pred             cchhhhHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhc----CCCCCHHHHHH
Q 040346           87 HQKPASGYAAALLDKALCH-SSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLS----SWKVNSYLAAL  161 (237)
Q Consensus        87 ~~~iA~rYAkALfe~A~e~-~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~----~~~~s~~~~nF  161 (237)
                      ...||+|||+|||++|.++ |.+++++++|..+.++|.+++|+.+|.||.+  ++|.+++.++++    + .+++.+.||
T Consensus         4 ~g~IAkRYAkAL~~~a~e~~~~le~v~~~L~~L~~~f~~~el~~il~~P~~--~~Kkk~l~~l~~~a~~~-~~~~~~~NF   80 (180)
T PRK13431          4 LKVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKLHKLNQVLAHVSL--KVKKEVVFEILEKITSI-KACSVLKPV   80 (180)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccHHHHHHHhCccH--HHHHHHHHHHHhhhccc-cccHHHHHH
Confidence            4569999999999999999 9999999999999999997799999999999  777777777776    4 689999999


Q ss_pred             HHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCC
Q 040346          162 LRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQE  231 (237)
Q Consensus       162 L~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDp  231 (237)
                      |++|++|+|+.+|++|+.+   ++++..|++.|+|+||.||+++|+++|++.|++++| ++|++.+.+++
T Consensus        81 l~LL~en~Rl~~LpeIa~~---L~~~~~~i~~~~V~SA~~Ls~~~~~~I~~~L~kk~g-~kV~L~~~~~~  146 (180)
T PRK13431         81 MEVVLKNNRLDMLELITEE---LSFDSKRTLEATLLVPEKLENNELEAVQQKLQARFN-APVEIAQDTWS  146 (180)
T ss_pred             HHHHHHcChHHHHHHHHHH---HHHHHcCeEEEEEEecccCCHHHHHHHHHHHHHHHC-CeEEEEeeccC
Confidence            9999999999999999994   999999999999999999999999999999999999 79999998875

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=98.41  E-value=1.4e-06  Score=77.12  Aligned_cols=43  Identities=21%  Similarity=0.311  Sum_probs=41.1

Q ss_pred             EEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCCC
Q 040346          192 RVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVPS  235 (237)
Q Consensus       192 ~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI~  235 (237)
                      ..++|+||+||+++|+++|.+.|++++| ++|.+++.|||+|||
T Consensus       177 ~~~~v~sa~~l~~~~~~~i~~~l~~~~~-~~v~~~~~vdp~lig  219 (246)
T TIGR03321       177 NPVLVRSAFELPEEQREQIRDTIRETLG-PEIRLRFQTEPDLIG  219 (246)
T ss_pred             CceEEEecCCCCHHHHHHHHHHHHHHHC-CCeeEEeeeCchhcC
Confidence            5599999999999999999999999999 899999999999994

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=97.27  E-value=0.0022  Score=57.14  Aligned_cols=45  Identities=7%  Similarity=0.055  Sum_probs=41.6

Q ss_pred             CCeEEEEEEeccCCCHHHHHHHHHHHHH-HhCCceeEEEeeeCCCCC
Q 040346          189 IGTRVVFVSSAKKMEEDQLFHIAKRVQN-LCGAAQVKIRNLIQEGVP  234 (237)
Q Consensus       189 ~gi~~a~V~SA~~Lseeq~~kI~~~L~k-k~g~k~V~L~~~VDpSLI  234 (237)
                      .+-..+.|+|++||++++.++|.+.|.. .+| ..+.+.+.+||+||
T Consensus       173 ~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~~-~~~~~~f~~~p~li  218 (250)
T PRK14474        173 TTPEMLRIRTSFELSQDLRAQILESLHQTHLI-PGTDIHFVTSPELI  218 (250)
T ss_pred             cCCCCeEEEeCCCCCHHHHHHHHHHHHHHhcC-CCCceeeecCcccc
Confidence            3555599999999999999999999999 999 79999999999999

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=97.05  E-value=0.0045  Score=55.81  Aligned_cols=61  Identities=15%  Similarity=0.282  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 040346          107 SLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIER  168 (237)
Q Consensus       107 ~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~  168 (237)
                      ...++.+||..+.+++. ++.++..|.||..+.+.|..++..+|++ ++++.+.+++..++.+
T Consensus        26 ~~~~~~~eL~~v~~~l~~~~~lrral~dp~~~~~~k~~L~~~l~~~-kv~~~~~~~~~~~v~~   87 (271)
T PRK13430         26 AAAQIGNELFAVVAVLDRERSLRRALTDPARPPEAKVELVKRLFGG-KVSPATLEVVSDAVRQ   87 (271)
T ss_pred             hHHHHHHHHHHHHHHHccchHHHHhcCCCCCChHHHHHHHHHHhcc-cCCHHHHHHHHHHHHh
Confidence            56789999999999999 9999999999999999999999999998 8999999999998886

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=95.87  E-value=0.05  Score=52.37  Aligned_cols=64  Identities=19%  Similarity=0.315  Sum_probs=58.5

Q ss_pred             CCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCc
Q 040346          106 SSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLIERNK  170 (237)
Q Consensus       106 ~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLie~~R  170 (237)
                      +.+.++-+||..+.+++. ++.|+..|.||..+.+.|..++..+|++ ++++.+..++.-++..+.
T Consensus       197 ~~~~~~~~el~~v~~~l~~~~~lrr~l~d~~~~~~~k~~l~~~l~~~-~~~~~~~~~~~~~~~~rw  261 (445)
T PRK13428        197 QALTTLADELVSVAKLLDREPVLTKHLTEPAEDAAPKIRLVERLFSG-KVGAPTLEVLRTAVSQRW  261 (445)
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHcCCCCCChhhHHHHHHHHhCc-CCCHHHHHHHHHHHhCcc
Confidence            346689999999999999 9999999999999999999999999998 899999999988887654

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=87.19  E-value=14  Score=33.14  Aligned_cols=72  Identities=10%  Similarity=0.121  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCceeEEEeeeCCCCC
Q 040346          157 YLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQEGVP  234 (237)
Q Consensus       157 ~~~nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~k~V~L~~~VDpSLI  234 (237)
                      ...+++..++++++..+++.|-+.+..+.+  .+.+.+.|   .|=+-+......+.+...+| ....+....||+|-
T Consensus       175 iaekvi~~~~~~~~~~i~~li~~al~~l~~--~~~i~I~V---~p~d~~~l~~~~~~l~~~l~-~~~~i~I~~D~~l~  246 (281)
T PRK06669        175 IAKKVIKEISENSKEIALALVKELLKEVKD--ATDITIRV---NPEDYEYVKEQKDELISLLD-NEEHLKIYEDDAIS  246 (281)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHcCc--CCcEEEEE---CHHHHHHHHHhHHHHHHhcC-CCCCeEEEECCCCC
Confidence            345888888999998888887777776543  23333333   33333444444444555676 56778888888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	2e-21
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	3e-18

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A Length = 190

 Score = 87.3 bits (217), Expect = 2e-21
 Identities = 29/137 (21%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 94  YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
           YA AL   A   + LE V++++L++ ++LK  ++ A   +P+V    K + + ++ +  K
Sbjct: 18  YATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEK 77

Query: 154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKR 213
            +   + L+ +L E  ++     V+  F  +     G     V++A  ++E  L  +   
Sbjct: 78  FSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTV 137

Query: 214 V-QNLCGAAQVKIRNLI 229
           +   L     +K+   I
Sbjct: 138 LKSFLSKGQVLKLEVKI 154

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B Length = 134

 Score = 77.4 bits (191), Expect = 3e-18
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 94  YAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWK 153
           YA A  D A+ H S+E  Q  +   + + KNEQ+  + +     +      +       +
Sbjct: 10  YAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCGE--Q 67

Query: 154 VNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKR 213
           ++     L+R++ E  ++  + DVLE+F  +      T  V V SA  + E QL  I+  
Sbjct: 68  LDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAA 127

Query: 214 VQ 215
           ++
Sbjct: 128 ME 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	100.0
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	99.97

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=100.00  E-value=6e-36  Score=253.47  Aligned_cols=156  Identities=19%  Similarity=0.296  Sum_probs=136.9

Q ss_pred             CCCCCCccchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHH
Q 040346           80 KSASPNSHQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLA  159 (237)
Q Consensus        80 ~~~~p~~~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~  159 (237)
                      ..+||+...++|+|||+|||++|.++|.+++|+++|..+.+++++++|+.+|.||.++.++|.+++.++|++.++++.+.
T Consensus         4 ~~~~~~~~~~ia~rYA~AL~~~A~e~~~l~~v~~~L~~l~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~~~   83 (190)
T 2wss_S            4 LVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTS   83 (190)
T ss_dssp             CCCCTTCCCSSSCTTHHHHHHHTTTTTCHHHHHHHHHHHHHHSSSTTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSSSS
T ss_pred             ccCCchHhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHCCHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999998645899999


Q ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhCC-ceeEEEeeeCCCCCC
Q 040346          160 ALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGA-AQVKIRNLIQEGVPS  235 (237)
Q Consensus       160 nFL~lLie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g~-k~V~L~~~VDpSLI~  235 (237)
                      |||++|++|+|+.+|++|+++|.+++++++|++.|+|+||.||+++|+++|++.|++++|. ++|+++++|||+|||
T Consensus        84 nfl~ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiG  160 (190)
T 2wss_S           84 NLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMG  160 (190)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSCBCCCCSSSTTTTTTTTSSTTTCC--------------
T ss_pred             HHHHHHHhCCcHhhHHHHHHHHHHHHHHHcCeeEEEEEECCCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhC
Confidence            9999999999999999999999999999999999999999999999999999999999972 699999999999994

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B

Probab=99.97  E-value=1.3e-30  Score=208.12  Aligned_cols=130  Identities=25%  Similarity=0.284  Sum_probs=95.1

Q ss_pred             cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040346           87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRML  165 (237)
Q Consensus        87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lL  165 (237)
                      ...+|+|||+|||++|.++|.+++|. ++..+...+. +++|+.+|. |.++.++|.+++.++|++ ++++.+.|||++|
T Consensus         3 ~~~ia~rYA~AL~~~A~e~~~l~~~~-e~~~~~~~~~~~~~l~~~l~-P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~ll   79 (134)
T 1abv_A            3 FITVARPYAKAAFDFAVEHQSVERWQ-DMLAFAAEVTKNEQMAELLS-GALAPETLAESFIAVCGE-QLDENGQNLIRVM   79 (134)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTSHHHHHHHT-CSSCHHHHHHHHHHHHCS-CCCHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCHHHHHHHC-ccCCHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence            46899999999999999999999996 5555555555 999999999 999999999999999986 8999999999999


Q ss_pred             HHcCccchHHHHHHHHHHHHHHHCCeEEEEEEeccCCCHHHHHHHHHHHHHHhC
Q 040346          166 IERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCG  219 (237)
Q Consensus       166 ie~~Rl~lL~~I~~~f~~l~~~~~gi~~a~V~SA~~Lseeq~~kI~~~L~kk~g  219 (237)
                      ++|+|+.+|++|+++|.+++++++|++.|+|+||.||+++|+++|++.|++++|
T Consensus        80 ~~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~L~~~~g  133 (134)
T 1abv_A           80 AENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRLS  133 (134)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHHHHHC----------------------------
T ss_pred             HHCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1abva_	105	a.70.1.1 (A:) N-terminal domain of the delta subun	4e-10

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]} Length = 105

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

 Score = 53.4 bits (128), Expect = 4e-10
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 91  ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLS 150
           A  YA A  D A+ H S+E  Q  +   + + KNEQ+  + +     +      +     
Sbjct: 7   ARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCGE 66

Query: 151 SWKVNSYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGT 191
             +++     L+R++ E  ++  + DVLE+F  +      T
Sbjct: 67  --QLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEAT 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1abva_	105	N-terminal domain of the delta subunit of the F1F0	99.89

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.7e-23  Score=156.71  Aligned_cols=103  Identities=22%  Similarity=0.262  Sum_probs=93.7

Q ss_pred             cchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040346           87 HQKPASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNSYLAALLRMLI  166 (237)
Q Consensus        87 ~~~iA~rYAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~nP~i~~e~K~~lL~~l~~~~~~s~~~~nFL~lLi  166 (237)
                      ..+||+|||+|||++|.|+|.+++|.++|..+..+++++++..+|.+|.++ ++|+..+..++++ ++++.+.|||++|+
T Consensus         3 ~~TiArrYAkALf~lA~e~~~l~~~~~~l~~l~~l~~~~~~~~~l~~p~~~-~~kk~~l~~~~~~-~~~~~~~nfl~lL~   80 (105)
T d1abva_           3 FITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAP-ETLAESFIAVCGE-QLDENGQNLIRVMA   80 (105)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSHHHHHHHTCSSCH-HHHHHHHHHHHCS-CCCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcCHHHHHHHhcccCc-HHHHHHHHHHHhc-ccCHHHHHHHHHHH
Confidence            567999999999999999999999999999999998899999999988776 4555666677776 89999999999999


Q ss_pred             HcCccchHHHHHHHHHHHHHHHCCe
Q 040346          167 ERNKVAMVSDVLEEFQRIYDDLIGT  191 (237)
Q Consensus       167 e~~Rl~lL~~I~~~f~~l~~~~~gi  191 (237)
                      +|||+.+|++|+++|.+++++++|+
T Consensus        81 ~~~Rl~~l~~I~~~f~~L~~~~e~T  105 (105)
T d1abva_          81 ENGRLNALPDVLEQFIHLRAVSEAT  105 (105)
T ss_dssp             HTTCGGGHHHHHHHHHHHHHHHHHC
T ss_pred             HCccHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999998874