Citrus Sinensis ID: 040358

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
MTSHQLYFFIVFTSLMFMFISSPCSCVEYDGATNLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYKGGHVPEACKSLSKPAETN
cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEcccccEEEcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHcccccccEEEEEEEccEEcHHHHHHHHHHHHHHcccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHccHccEEEEEEEccccEEEccccEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccccHccccccccccc
MTSHQLYFFIVFTSLMFMFisspcscveydgatnlpppkhndnvnLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNlrlipwgnakivepnktidcqhgedecyfntIEACAilawpdqpknhfDFIQCLenrtlrgpirdrkEAWLTCckdlelspnfIKDCYESGIGRLlelkygdetlhlnppleyvpwvtvnnKALREDYEKFVEYVCGaykgghvpeackslskpaetn
MTSHQLYFFIVFTSLMFMFISSPCSCVEYDGATNLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRtlrgpirdrKEAWLTCckdlelspnfIKDCYESGIGRLLELKYGDETLhlnppleyvpwVTVNNKALREDYEKFVEYVCGAYKGghvpeackslskpaetn
MTSHQLYFFIVFTSLMFMFISSPCSCVEYDGATNLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYKGGHVPEACKSLSKPAETN
****QLYFFIVFTSLMFMFISSPCSCVEYDGATNLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYKGGHVP*************
****QLY*FIVFTSLMFMFISSPCS*****************NVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFI********GRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYKGGHVP*************
MTSHQLYFFIVFTSLMFMFISSPCSCVEYDGATNLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYKGGHVPEACK*********
**SHQLYFFIVFTSLMFMFISSPCSCVEYDGATNL**PKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYKGGHVPE*C**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTSHQLYFFIVFTSLMFMFISSPCSCVEYDGATNLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYKGGHVPEACKSLSKPAETN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query236 2.2.26 [Sep-21-2011]
P13284250 Gamma-interferon-inducibl yes no 0.716 0.676 0.381 2e-20
A6QPN6244 Gamma-interferon-inducibl yes no 0.711 0.688 0.367 2e-19
Q9ESY9248 Gamma-interferon-inducibl yes no 0.745 0.709 0.348 5e-19
Q499T2248 Gamma-interferon-inducibl yes no 0.745 0.709 0.354 7e-19
B3SP85246 Gamma-interferon-inducibl yes no 0.800 0.768 0.336 2e-18
O17861277 GILT-like protein F37H8.5 yes no 0.669 0.570 0.323 4e-17
P34276323 GILT-like protein C02D5.2 no no 0.741 0.541 0.251 8e-12
Q61Z40220 GILT-like protein CBG0328 N/A no 0.822 0.881 0.225 4e-06
Q23570218 GILT-like protein ZK669.3 no no 0.483 0.522 0.237 1e-05
>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3 Back     alignment and function desciption
 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 25/194 (12%)

Query: 44  VNLSLYYETLCPGCAEFISEGLGKLFEKGLI--SIVNLRLIPWGNAKI--VEPNKTIDCQ 99
           VN++LYYE LC GC  F+   + +LF   L+   I+N+ L+P+GNA+   V       CQ
Sbjct: 62  VNVTLYYEALCGGCRAFL---IRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQ 118

Query: 100 HGEDECYFNTIEACAILAWPDQPKNHFDF--IQCLENRTLRGPIRDRKEAWLTCCKDL-- 155
           HGE+EC FN +EAC +    D+      F  I C+E         +  E  L  C  L  
Sbjct: 119 HGEEECKFNKVEACVL----DELDMELAFLTIVCMEEF-------EDMERSLPLCLQLYA 167

Query: 156 -ELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVC 214
             LSP+ I +C     G  L       T  L PP EYVPWVTVN K L ED  + +  VC
Sbjct: 168 PGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVC 226

Query: 215 GAYKGGHVPEACKS 228
             Y+G   P+ C S
Sbjct: 227 QLYQGKK-PDVCPS 239
Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -
>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1 Back     alignment and function description
>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3 Back     alignment and function description
>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus norvegicus GN=Ifi30 PE=2 SV=1 Back     alignment and function description
>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa GN=IFI30 PE=2 SV=1 Back     alignment and function description
>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1 Back     alignment and function description
>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3 SV=1 Back     alignment and function description
>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282 PE=3 SV=1 Back     alignment and function description
>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
224122192269 predicted protein [Populus trichocarpa] 0.944 0.828 0.487 4e-55
255574274275 Gamma-interferon-inducible lysosomal thi 0.953 0.818 0.465 8e-53
224139218242 predicted protein [Populus trichocarpa] 0.898 0.876 0.487 2e-52
356496241263 PREDICTED: gamma-interferon-inducible ly 0.775 0.695 0.547 2e-52
255571433251 Gamma-interferon-inducible lysosomal thi 0.885 0.832 0.476 4e-50
357468571 351 Gamma-interferon-inducible lysosomal thi 0.779 0.524 0.528 8e-50
297735627317 unnamed protein product [Vitis vinifera] 0.936 0.697 0.480 1e-49
225439464261 PREDICTED: gamma-interferon-inducible ly 0.940 0.850 0.478 2e-49
147859355261 hypothetical protein VITISV_043667 [Viti 0.940 0.850 0.473 8e-49
225434492259 PREDICTED: gamma-interferon-inducible ly 0.788 0.718 0.541 1e-48
>gi|224122192|ref|XP_002318774.1| predicted protein [Populus trichocarpa] gi|222859447|gb|EEE96994.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 115/236 (48%), Positives = 152/236 (64%), Gaps = 13/236 (5%)

Query: 1   MTSHQLYFFIVFTSLMFMFISSPCSCVEYDGATNLPPP-------KHNDNVNLSLYYETL 53
           M S  L  F+V T LMF+F++ P    EYD A    PP       ++++ V +SLYYE+L
Sbjct: 1   MGSSPLLSFLVLT-LMFLFVT-PSHSSEYDAAQEPAPPFTSRKISRNSEKVTMSLYYESL 58

Query: 54  CPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEAC 113
           CP C+ FI   L ++ E  L++I+NLRL+PWGNA I++ N TI+CQHGEDECY N I  C
Sbjct: 59  CPYCSSFIVGPLAQVLETDLMTILNLRLVPWGNA-ILDSNSTIECQHGEDECYLNIIHTC 117

Query: 114 AILAWPDQPKNHFDFIQCLENRTLRGPIRD-RKEAWLTCCKDLELSPNFIKDCYESGIGR 172
           AI  WPD  K HF+FI+C+E +  + P R+  +E+W  C   L LS   IK CY+SG G+
Sbjct: 118 AINLWPDL-KKHFNFIKCIE-KQYKAPDRNGAEESWEVCSGKLRLSTKSIKKCYDSGHGK 175

Query: 173 LLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYKGGHVPEACKS 228
            L L+ G ET HL PP EYVPWV V++  L +DY  F+ YVC AYKG  +P+ C S
Sbjct: 176 KLVLQNGKETDHLRPPHEYVPWVVVDDTPLLDDYVNFIHYVCKAYKGKSLPKTCSS 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255574274|ref|XP_002528051.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis] gi|223532512|gb|EEF34301.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224139218|ref|XP_002323009.1| predicted protein [Populus trichocarpa] gi|118482314|gb|ABK93083.1| unknown [Populus trichocarpa] gi|222867639|gb|EEF04770.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356496241|ref|XP_003516977.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|255571433|ref|XP_002526664.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis] gi|223533964|gb|EEF35686.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357468571|ref|XP_003604570.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] gi|355505625|gb|AES86767.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297735627|emb|CBI18121.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225439464|ref|XP_002267105.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859355|emb|CAN83947.1| hypothetical protein VITISV_043667 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225434492|ref|XP_002275283.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 2 [Vitis vinifera] gi|297745847|emb|CBI15903.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
TAIR|locus:2149730233 OSH1 "AT5G01580" [Arabidopsis 0.796 0.806 0.507 3e-46
TAIR|locus:2007407265 AT1G07080 "AT1G07080" [Arabido 0.855 0.762 0.457 1e-45
TAIR|locus:2135813232 AT4G12890 "AT4G12890" [Arabido 0.822 0.836 0.419 2.1e-38
TAIR|locus:2123286231 AT4G12900 "AT4G12900" [Arabido 0.745 0.761 0.439 2.1e-38
TAIR|locus:2123251243 GILT "AT4G12960" [Arabidopsis 0.800 0.777 0.414 1.1e-37
TAIR|locus:2135783229 AT4G12870 "AT4G12870" [Arabido 0.75 0.772 0.433 6.5e-35
UNIPROTKB|P13284250 IFI30 "Gamma-interferon-induci 0.724 0.684 0.390 3.8e-23
UNIPROTKB|F1PK63251 IFI30 "Uncharacterized protein 0.711 0.669 0.378 4.8e-23
UNIPROTKB|A6QPN6244 IFI30 "Gamma-interferon-induci 0.805 0.778 0.361 3.4e-22
UNIPROTKB|F1MAU3244 IFI30 "Gamma-interferon-induci 0.805 0.778 0.356 3.4e-22
TAIR|locus:2149730 OSH1 "AT5G01580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 99/195 (50%), Positives = 121/195 (62%)

Query:    41 NDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQH 100
             +  V LSLYYE LCP CAEFI   L K+FE GLIS ++L+L+PWGNA I  P+ TI CQH
Sbjct:    24 SQKVTLSLYYEALCPFCAEFIVNRLPKIFETGLISSIDLQLVPWGNAAI-RPDGTILCQH 82

Query:   101 GEDECYFNTIEACAILAWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPN 160
             GE EC  N I ACAI A+PD  K HF +I C E   L   +    E W  C + + LS  
Sbjct:    83 GEAECALNAIHACAINAYPDVMK-HFGYIYCTEQLVLENKL----EKWADCLEMVGLSRA 137

Query:   161 FIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVNNKALREDYEKFVEYVCGAYKGG 220
              + DCY +G G  LE +Y +ET  L P   +VPWV VNN  L+E+Y+ FV YVC AY   
Sbjct:   138 AV-DCYINGYGNQLEQRYAEETSELYPAHRFVPWVVVNNLPLQENYQNFVMYVCNAYGSN 196

Query:   221 HVPEACKSLSKPAET 235
              VPEAC+ L+   ET
Sbjct:   197 QVPEACRILNSSVET 211
GO:0003824 "catalytic activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2007407 AT1G07080 "AT1G07080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135813 AT4G12890 "AT4G12890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123286 AT4G12900 "AT4G12900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123251 GILT "AT4G12960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135783 AT4G12870 "AT4G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P13284 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PK63 IFI30 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6QPN6 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MAU3 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
pfam03227109 pfam03227, GILT, Gamma interferon inducible lysoso 1e-25
>gnl|CDD|217437 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase (GILT) Back     alignment and domain information 
 Score = 96.2 bits (240), Expect = 1e-25
 Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 44  VNLSLYYETLCPGCAEFISEGLGK-LFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGE 102
           VN++LYYE+LCP C +FI   L    F+  L+ I +L+L+P+G A+ V+      CQHG 
Sbjct: 1   VNITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFGKARCVDDGSVCTCQHGP 60

Query: 103 DECYFNTIEACAILAWPDQPKNHFDFIQCLENRT 136
           +EC  N ++AC I   P+  K    FI+C++ +T
Sbjct: 61  EECKLNALQACVIETLPN-QKLQLPFIRCMQGKT 93

This family includes the two characterized human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences. It also contains several other eukaryotic putative proteins with similarity to GILT. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction. Length = 109

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 236
KOG3160220 consensus Gamma-interferon inducible lysosomal thi 100.0
PF03227108 GILT: Gamma interferon inducible lysosomal thiol r 100.0
cd03023154 DsbA_Com1_like DsbA family, Com1-like subfamily; c 98.89
PF13462162 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV 98.74
cd03019178 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m 98.69
PRK10954207 periplasmic protein disulfide isomerase I; Provisi 98.32
cd03024201 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D 97.96
PF01323193 DSBA: DSBA-like thioredoxin domain; InterPro: IPR0 97.51
cd03022192 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car 97.31
COG1651244 DsbG Protein-disulfide isomerase [Posttranslationa 97.19
cd03025193 DsbA_FrnE_like DsbA family, FrnE-like subfamily; c 97.18
PF13743176 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C. 96.99
COG2761225 FrnE Predicted dithiol-disulfide isomerase involve 96.25
PRK10877232 protein disulfide isomerase II DsbC; Provisional 93.43
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 92.62
PRK11657251 dsbG disulfide isomerase/thiol-disulfide oxidase; 91.74
cd03020197 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil 87.79
cd0297298 DsbA_family DsbA family; consists of DsbA and DsbA 87.5
cd03021209 DsbA_GSTK DsbA family, Glutathione (GSH) S-transfe 86.44
PF14595129 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. 81.87
cd0297367 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- 80.95
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-51  Score=356.83  Aligned_cols=183  Identities=38%  Similarity=0.790  Sum_probs=163.8

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecceeecCCCceeccCCchhhccChhhhhHhh
Q 040358           37 PPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAIL  116 (236)
Q Consensus        37 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCai~  116 (236)
                      .+.+.+||+|++|||||||||++||++||+|+|...+.+++||++||||||+..+..++|+||||+.||.+|++|||+|+
T Consensus        34 ~~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~  113 (220)
T KOG3160|consen   34 KGSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVID  113 (220)
T ss_pred             ccccCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHH
Confidence            46667799999999999999999999999999986578999999999999965443378999999999999999999999


Q ss_pred             hCCCCCCCchhhhhhhhcccCCCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEE
Q 040358          117 AWPDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVT  196 (236)
Q Consensus       117 ~~~~~~~~~~~fI~Cm~~~~~~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~  196 (236)
                      ++++. ..+++||.||++.       .....+.+|+++.+.++..|++|++|++|.+|+.++|.+|.++.|+|.|||||+
T Consensus       114 ~l~~~-~~~l~~i~C~~~~-------~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi~  185 (220)
T KOG3160|consen  114 TLPDQ-SDQLPFIRCIQGK-------QKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWIL  185 (220)
T ss_pred             hhhch-Hhhhceehhhhcc-------cchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcCeEE
Confidence            99987 9999999999984       233445679999999999999999999999999999999999999999999999


Q ss_pred             ECCeechhhHHHHHHHHHHhccCCC-CCCCCC
Q 040358          197 VNNKALREDYEKFVEYVCGAYKGGH-VPEACK  227 (236)
Q Consensus       197 ING~~~~~~~~nL~~~IC~~y~~~~-~P~~C~  227 (236)
                      |||++..++..+|.+.+|..|++.. +|..|.
T Consensus       186 vNg~~~~~~~~~l~~~~C~~~~~~~~~~~~~~  217 (220)
T KOG3160|consen  186 VNGQPLQDAEQDLVTLLCEAYKGKKQKPLKCQ  217 (220)
T ss_pred             ECCcchHHHHHHHHHHHHHHHhhccccCcccc
Confidence            9999999998899999999999832 354443

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ] Back     alignment and domain information
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti Back     alignment and domain information
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A Back     alignment and domain information
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold Back     alignment and domain information
>PRK10954 periplasmic protein disulfide isomerase I; Provisional Back     alignment and domain information
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif Back     alignment and domain information
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family [] Back     alignment and domain information
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway Back     alignment and domain information
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE Back     alignment and domain information
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C Back     alignment and domain information
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK10877 protein disulfide isomerase II DsbC; Provisional Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional Back     alignment and domain information
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold Back     alignment and domain information
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins Back     alignment and domain information
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates Back     alignment and domain information
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A Back     alignment and domain information
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
3gha_A202 Disulfide bond formation protein D; BDBD, DSBA-lik 99.13
3bci_A186 Disulfide bond protein A; thiol-disulfide oxidored 99.03
3f4s_A226 Alpha-DSBA1, putative uncharacterized protein; thi 98.98
3gyk_A175 27KDA outer membrane protein; APC61738.2, siliciba 98.97
3gmf_A205 Protein-disulfide isomerase; oxidoreductase, PSI-2 98.91
2rem_A193 Disulfide oxidoreductase; disulfide oxidoreductase 98.89
2znm_A195 Thiol:disulfide interchange protein DSBA; thioredo 98.86
4dvc_A184 Thiol:disulfide interchange protein DSBA; pilus as 98.85
3h93_A192 Thiol:disulfide interchange protein DSBA; disulfid 98.83
3hd5_A195 Thiol:disulfide interchange protein DSBA; protein 98.77
3hz8_A193 Thiol:disulfide interchange protein DSBA; thiol-ox 98.68
3gn3_A182 Putative protein-disulfide isomerase; MCSG, PSI, s 98.57
1z6m_A175 Conserved hypothetical protein; structural genomic 98.41
3c7m_A195 Thiol:disulfide interchange protein DSBA-like; red 98.4
3l9s_A191 Thiol:disulfide interchange protein; thioredoxin-f 98.34
3l9v_A189 Putative thiol-disulfide isomerase or thioredoxin; 98.33
2in3_A216 Hypothetical protein; DSBA family, FRNE-like subfa 98.15
2imf_A203 HCCA isomerase, 2-hydroxychromene-2-carboxylate is 98.11
3feu_A185 Putative lipoprotein; alpha-beta structure, struct 97.81
3kzq_A208 Putative uncharacterized protein VP2116; protein w 97.77
3gl5_A239 Putative DSBA oxidoreductase SCO1869; probable DSB 97.6
3fz5_A202 Possible 2-hydroxychromene-2-carboxylate isomeras; 97.46
1r4w_A226 Glutathione S-transferase, mitochondrial; glutathi 97.1
3rpp_A234 Glutathione S-transferase kappa 1; glutathione tra 96.49
1un2_A 197 DSBA, thiol-disulfide interchange protein; disulfi 96.07
1v58_A241 Thiol:disulfide interchange protein DSBG; reduced 93.11
3tdg_A273 DSBG, putative uncharacterized protein; thioredoxi 87.54
1t3b_A211 Thiol:disulfide interchange protein DSBC; oxidored 86.18
1eej_A216 Thiol:disulfide interchange protein; oxidoreductas 82.81
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A Back     alignment and structure
Probab=99.13  E-value=5.5e-10  Score=93.90  Aligned_cols=167  Identities=17%  Similarity=0.213  Sum_probs=118.0

Q ss_pred             CCCCCCCCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccc--eeeEEEEeeecceeecCCCceeccCCchhhccChh
Q 040358           33 TNLPPPKHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLIS--IVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTI  110 (236)
Q Consensus        33 ~~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d--~vdl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~  110 (236)
                      ++..+|..+.+|+|.+|..-.||+|++|. ..+.|.+.+.+.+  .+.|.++||.-             ||+.-=.+-..
T Consensus        20 ~~~~~G~~~a~vtvvef~D~~CP~C~~~~-~~~~~~l~~~~~~~g~v~~~~~~~p~-------------~~~~s~~Aa~a   85 (202)
T 3gha_A           20 GQPVLGKDDAPVTVVEFGDYKCPSCKVFN-SDIFPKIQKDFIDKGDVKFSFVNVMF-------------HGKGSRLAALA   85 (202)
T ss_dssp             TSCEESCTTCSEEEEEEECTTCHHHHHHH-HHTHHHHHHHTTTTTSEEEEEEECCC-------------SHHHHHHHHHH
T ss_pred             CCceecCCCCCEEEEEEECCCChhHHHHH-HHhhHHHHHHhccCCeEEEEEEecCc-------------cchhHHHHHHH
Confidence            36788899999999999999999999996 5688887655643  67777776642             11111111122


Q ss_pred             hhhHhhhCCCCCCCchhhhhhhhcccCCCCCc--chhHHHHHHHHh-cCCChhhHhhcccCchhHHHHHHHHhhhhhcCC
Q 040358          111 EACAILAWPDQPKNHFDFIQCLENRTLRGPIR--DRKEAWLTCCKD-LELSPNFIKDCYESGIGRLLELKYGDETLHLNP  187 (236)
Q Consensus       111 qaCai~~~~~~~~~~~~fI~Cm~~~~~~~~~~--~~~~~~~~Ca~~-~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p  187 (236)
                      -.|+...  +. .++|+|..-++.... ...+  .....+...+++ .|+|.+.+.+|.++......+.+..+...++  
T Consensus        86 a~a~~~~--~~-~~f~~~~~aLf~~~~-~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~--  159 (202)
T 3gha_A           86 SEEVWKE--DP-DSFWDFHEKLFEKQP-DTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKM--  159 (202)
T ss_dssp             HHHHHHH--CG-GGHHHHHHHHHHHCC-SSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHT--
T ss_pred             HHHHHhh--CH-HHHHHHHHHHHHhCc-cccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--
Confidence            2343332  33 789999999887622 1110  234557788998 9999999999999888888887766666554  


Q ss_pred             CCceeeEEEECCeech--hhHHHHHHHHHHhccC
Q 040358          188 PLEYVPWVTVNNKALR--EDYEKFVEYVCGAYKG  219 (236)
Q Consensus       188 ~~~~VPwI~ING~~~~--~~~~nL~~~IC~~y~~  219 (236)
                      ++..+|+++|||+++.  ...+.|.+.|=+..++
T Consensus       160 gV~gtPtfvvnG~~~~G~~~~e~l~~~i~~~~~~  193 (202)
T 3gha_A          160 NIQATPTIYVNDKVIKNFADYDEIKETIEKELKG  193 (202)
T ss_dssp             TCCSSCEEEETTEECSCTTCHHHHHHHHHHHHHH
T ss_pred             CCCcCCEEEECCEEecCCCCHHHHHHHHHHHHHh
Confidence            6899999999999864  3577888887766554
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A Back     alignment and structure
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A* Back     alignment and structure
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} Back     alignment and structure
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans} Back     alignment and structure
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} Back     alignment and structure
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A Back     alignment and structure
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A Back     alignment and structure
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 Back     alignment and structure
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} Back     alignment and structure
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A Back     alignment and structure
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 Back     alignment and structure
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A Back     alignment and structure
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A Back     alignment and structure
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 Back     alignment and structure
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} Back     alignment and structure
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A* Back     alignment and structure
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 Back     alignment and structure
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus} Back     alignment and structure
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3} Back     alignment and structure
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2} Back     alignment and structure
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13 Back     alignment and structure
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A* Back     alignment and structure
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 Back     alignment and structure
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A Back     alignment and structure
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori} Back     alignment and structure
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 Back     alignment and structure
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
d1beda_181 Disulfide-bond formation facilitator (DsbA) {Vibri 98.89
d1fvka_188 Disulfide-bond formation facilitator (DsbA) {Esche 98.47
d1z6ma1172 Hypothetical protein EF0770 {Enterococcus faecalis 98.39
d1v58a1169 Thiol:disulfide interchange protein DsbG, C-termin 97.18
d1t3ba1150 Disulfide bond isomerase, DsbC, C-terminal domain 96.91
d1un2a_195 Disulfide-bond formation facilitator (DsbA) {Esche 96.52
d1eeja1156 Disulfide bond isomerase, DsbC, C-terminal domain 89.63
d1r4wa_221 Mitochondrial class kappa glutathione S-transferas 84.14
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.89  E-value=7.4e-09  Score=81.44  Aligned_cols=156  Identities=14%  Similarity=0.121  Sum_probs=95.9

Q ss_pred             CCCCceEEEEEEEecChhhHHHHHhhhHHHHHhcccceeeEEEEeeecceeecCCCceeccCCchhhccChhhhhHhhhC
Q 040358           39 KHNDNVNLSLYYETLCPGCAEFISEGLGKLFEKGLISIVNLRLIPWGNAKIVEPNKTIDCQHGEDECYFNTIEACAILAW  118 (236)
Q Consensus        39 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~  118 (236)
                      ..+.+++|.+|.--.||+|++|. ..+.+.++ ++.+.+.+.++|+--... . ..          =...+..+++... 
T Consensus        15 p~~~~~~Ivef~d~~Cp~C~~~~-~~~~~l~~-~~~~~~~~~~~~~~~~~~-~-~~----------~~~~~~~~~~~~~-   79 (181)
T d1beda_          15 PASSSPVVSEFFSFYCPHCNTFE-PIIAQLKQ-QLPEGAKFQKNHVSFMGG-N-MG----------QAMSKAYATMIAL-   79 (181)
T ss_dssp             CCCSSCEEEEEECTTCHHHHHHH-HHHHHHHH-TSCTTCEEEEEECSSSSG-G-GH----------HHHHHHHHHHHHT-
T ss_pred             CCCCCCEEEEEECCCCccchhhh-hhhhhHhh-hcccccceeEEecccccc-c-cH----------HHHHHHHHHHHHh-
Confidence            34678899999999999999995 56777676 466666665555432200 0 00          0011222222221 


Q ss_pred             CCCCCCchhhhhhhhcccCCCCCcchhHHHHHHHHhcCCChhhHhhcccCchhHHHHHHHHhhhhhcCCCCceeeEEEEC
Q 040358          119 PDQPKNHFDFIQCLENRTLRGPIRDRKEAWLTCCKDLELSPNFIKDCYESGIGRLLELKYGDETLHLNPPLEYVPWVTVN  198 (236)
Q Consensus       119 ~~~~~~~~~fI~Cm~~~~~~~~~~~~~~~~~~Ca~~~g~d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~VPwI~IN  198 (236)
                      ...+..+..+..=+... ...+  .....+..-+...|+|.+.+.+|.++.+..+.+.+..+.....  +++.+|+|+||
T Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~--gi~gTPt~~In  154 (181)
T d1beda_          80 EVEDKMVPVMFNRIHTL-RKPP--KDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDS--GLTGVPAVVVN  154 (181)
T ss_dssp             TCHHHHHHHHHHHHTTS-CCCC--CSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--TCCSSSEEEET
T ss_pred             cchhhHHHHHHHHHHHh-cccc--chHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHh--CCccccEEEEC
Confidence            11101111122222221 1111  3455677889999999999999999999999998887777665  68999999999


Q ss_pred             Ceech-----hhHHHHHHHHH
Q 040358          199 NKALR-----EDYEKFVEYVC  214 (236)
Q Consensus       199 G~~~~-----~~~~nL~~~IC  214 (236)
                      |+++.     ...+.|...|=
T Consensus       155 Gk~~v~~~~~~~~~~l~~~i~  175 (181)
T d1beda_         155 NRYLVQGQSVKSLDEYFDLVN  175 (181)
T ss_dssp             TTEEECGGGCCSHHHHHHHHH
T ss_pred             CEEeeCCCCCCCHHHHHHHHH
Confidence            99642     13566665553
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure