Citrus Sinensis ID: 040384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MISSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRPK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccccccccccccccEEccccccccccccccEEEEEEccccccccccEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEcccccEEEEEEccccccccEEcccccccccccccHHHHHHHccccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccccccccccEccccccEEcccccccHHHccHHHccccccccccccccccEEEEEEcccccHHHcccccEEEEEEEccccEEEEEEcccccEEEEEEEcEEEEEEEHHcccEEEEEEEcccEEEEcccccEEEEEcccccEEEEEEEcccccccEEHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MISSRLLCCLTALlilplssnaadpdplqdiciadldakisvngfpckpetevtsddfffdlseegnlsnafgravtegnvhefpgvntqgistnrvdlavgginpphlhprssessivIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLnvgkenvlffpsfnsqlpgtqfvhsslfnttppipnevltktfLVGDEVINAIKAAITSaqlghrpk
Flexible Loop (DISEMBL)
MISSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPphlhprssessiVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAitsaqlghrpk
Low Complexity Region (SEG)
MIssrllccltallilplssNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRPK
Disordered region (IsUnstruct)
****RLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGIN***********SIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAIT*********
Disordered Region (DISOPRED)
****RLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINA***************
Disordered Region (DISEMBL)
MISSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRPK
Disordered Region (DISPRO)
*ISSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITS********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MISSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
P45851	224	Oxalate oxidase 2 OS=Hord	N/A	no	0.955	0.955	0.520	7e-54
P15290	224	Oxalate oxidase GF-2.8 OS	N/A	no	0.955	0.955	0.515	2e-53
Q9LMC9	220	Germin-like protein subfa	yes	no	0.928	0.945	0.497	2e-52
Q6I544	221	Germin-like protein 5-1 O	yes	no	0.875	0.886	0.497	1e-51
P45850	201	Oxalate oxidase 1 OS=Hord	N/A	no	0.843	0.940	0.535	3e-50
Q851K1	229	Germin-like protein 3-6 O	no	no	0.959	0.938	0.486	4e-50
Q851J9	229	Putative germin-like prot	no	no	0.959	0.938	0.486	6e-50
Q94JF3	224	Germin-like protein 1-2 O	no	no	0.848	0.848	0.528	7e-50
P26759	224	Oxalate oxidase GF-3.8 OS	N/A	no	0.933	0.933	0.495	2e-49
P92995	220	Germin-like protein subfa	no	no	0.910	0.927	0.483	2e-49

>sp|P45851|OXO2_HORVU Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1

 Score =  210 bits (534), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 143/221 (64%), Gaps = 7/221 (3%)

Query: 3   SSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFF- 60
           S  L   L A+L+L  +  A+DPDPLQD C+ADLD K +SVNG PCKP +E   DDF F 
Sbjct: 4   SKTLAVSLFAVLLLAPAVLASDPDPLQDFCVADLDGKAVSVNGHPCKPMSE-AGDDFLFS 62

Query: 61  -DLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIV 119
             L++ GN S   G AVTE +V E+PG NT G+S NRVD A GG NPPH+HPR++E  IV
Sbjct: 63  SKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIV 122

Query: 120 IRGTVLVGII---TTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG 176
           ++G +LVGI+    + N  YS+VV AG  FLIPRGL+HFQ NVGK       SFNSQ PG
Sbjct: 123 MKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPG 182

Query: 177 TQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSA 217
             FV  +LF + PPIP  VLTK   V   V+  +K+   + 
Sbjct: 183 IVFVPLTLFGSNPPIPTPVLTKALRVEAGVVELLKSKFAAG 223

Releases hydrogen peroxide in the apoplast. May play an important role in several aspects of plant growth and defense mechanisms.
Hordeum vulgare (taxid: 4513)
EC: 1EC: .EC: 2EC: .EC: 3EC: .EC: 4

>sp|P15290|GER2_WHEAT Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/221 (51%), Positives = 142/221 (64%), Gaps = 7/221 (3%)

Query: 3   SSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFF- 60
           S  L+  L A+L+L  +  A DPDPLQD C+ADLD K +SVNG  CKP +E   DDF F 
Sbjct: 4   SKTLVAGLFAMLLLAPAVLATDPDPLQDFCVADLDGKAVSVNGHTCKPMSE-AGDDFLFS 62

Query: 61  -DLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIV 119
             L++ GN S   G AVTE +V E+PG NT G+S NRVD A GG NPPH+HPR++E  IV
Sbjct: 63  SKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIV 122

Query: 120 IRGTVLVGII---TTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG 176
           ++G +LVGI+    + N  YS+VV AG  FLIPRGL+HFQ NVGK       SFNSQ PG
Sbjct: 123 MKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPG 182

Query: 177 TQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSA 217
             FV  +LF + PPIP  VLTK   V   V+  +K+   + 
Sbjct: 183 IVFVPLTLFGSNPPIPTPVLTKALRVEARVVELLKSKFAAG 223

Produces developmental and stress-related release of hydrogen peroxide in the apoplast. May play an important role in several aspects of plant growth and defense mechanisms.

Triticum aestivum (taxid: 4565)

EC: 1

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 4

>sp|Q9LMC9|GLT2_ARATH Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/211 (49%), Positives = 139/211 (65%), Gaps = 3/211 (1%)

Query: 3   SSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD- 61
           SS     L  + +  + S ++D DPLQD C+ DL A  S+NGFPCK  + V++ DFFF  
Sbjct: 8   SSLFRSFLLVICVFVIPSLSSDSDPLQDFCVGDLKASPSINGFPCK--SSVSASDFFFSG 65

Query: 62  LSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIR 121
           L    N S   G AV+  NV  FPG+NT G+S N V+ A GG+NPPH HPR++E+ +VI 
Sbjct: 66  LGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIE 125

Query: 122 GTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH 181
           G+V VG +TT+N  +SKV+ AG +F++PRGLVHFQ NVGK       SFNSQLPG+  + 
Sbjct: 126 GSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLP 185

Query: 182 SSLFNTTPPIPNEVLTKTFLVGDEVINAIKA 212
           S+LF + P IPN VLTKTF   D  +N +K+
Sbjct: 186 STLFGSNPTIPNAVLTKTFRTDDVTVNKLKS 216

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6I544|GL52_ORYSJ Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 99/199 (49%), Positives = 133/199 (66%), Gaps = 3/199 (1%)

Query: 17  PLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRA 75
           P  S A DPD LQDIC+ADL + + VNGF CK    VT DDF+F  L+  GN +N +G  
Sbjct: 20  PTPSTAGDPDLLQDICVADLTSAVKVNGFACK--AAVTEDDFYFKGLAAAGNTNNTYGSV 77

Query: 76  VTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF 135
           VT  NV + PG+NT G+S +R+D A GG+NPPH HPR++E   V++GT+ VG ITT N  
Sbjct: 78  VTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITTANKL 137

Query: 136 YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEV 195
           Y+K ++AG +F+ PRGL+HFQ N G        +FNSQLPGTQ +  +LF  +P +P+ V
Sbjct: 138 YTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGV 197

Query: 196 LTKTFLVGDEVINAIKAAI 214
           LTK F VG + +  IK+ +
Sbjct: 198 LTKAFQVGTKEVEKIKSRL 216

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P45850|OXO1_HORVU Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1

 Score =  197 bits (502), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 131/196 (66%), Gaps = 7/196 (3%)

Query: 23  ADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFF--DLSEEGNLSNAFGRAVTEG 79
           +DPDPLQD C+ADLD K +SVNG  CKP +E   DDF F   L++ GN S   G AVTE 
Sbjct: 1   SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTEL 59

Query: 80  NVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII---TTDNVFY 136
           +V E+PG NT G+S NRVD A GG NPPH+HPR++E  +V++G +LVGI+    + N  Y
Sbjct: 60  DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119

Query: 137 SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVL 196
           S+VV AG  F+IPRGL+HFQ NVGK       SFNSQ PG  FV  +LF + PPIP  VL
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179

Query: 197 TKTFLVGDEVINAIKA 212
           TK   V   V+  +K+
Sbjct: 180 TKALRVEAGVVELLKS 195

Releases hydrogen peroxide in the apoplast which may be important for cross-linking reactions in the cell wall biochemistry. May play an important role in several aspects of plant growth and defense mechanisms.

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 4

>sp|Q851K1|GL36_ORYSJ Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1

 Score =  197 bits (502), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 141/222 (63%), Gaps = 7/222 (3%)

Query: 2   ISSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFF- 60
           I++ ++  +  L   P+   A D DPLQD C+ADLD+K++VNG  CKP +    D+F F 
Sbjct: 8   IAAGVVIVVLLLQQAPVLIRATDADPLQDFCVADLDSKVTVNGHACKPAS-AAGDEFLFS 66

Query: 61  -DLSEEGNL-SNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSI 118
             ++  G++ +N  G  VTE +V E+PGVNT G+S NRVD A GG NPPH+HPR++E  I
Sbjct: 67  SKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGI 126

Query: 119 VIRGTVLVGII---TTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLP 175
           V+RG +LVGII    T N +YSKVV AG  F+IPRGL+HFQ NVGK       SFNSQ P
Sbjct: 127 VLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNP 186

Query: 176 GTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSA 217
           G  FV  +LF + PPIP  VL K   V   V+  +K+  T  
Sbjct: 187 GIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGG 228

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q851J9|GL34_ORYSJ Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1

 Score =  197 bits (500), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 141/222 (63%), Gaps = 7/222 (3%)

Query: 2   ISSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFF- 60
           I++ ++  +  L   P+   A D DPLQD C+ADLD+K++VNG  CKP +    D+F F 
Sbjct: 8   ITAGVVFVVLLLQQAPVLIRATDADPLQDFCVADLDSKVTVNGHACKPAS-AAGDEFLFS 66

Query: 61  -DLSEEGNL-SNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSI 118
             ++  G++ +N  G  VTE +V E+PGVNT G+S NRVD A GG NPPH+HPR++E  I
Sbjct: 67  SKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGI 126

Query: 119 VIRGTVLVGIITT---DNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLP 175
           V+RG +LVGII T    N +YSKVV AG  F+IPRGL+HFQ NVGK       SFNSQ P
Sbjct: 127 VLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNP 186

Query: 176 GTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSA 217
           G  FV  +LF + PPIP  VL K   V   V+  +K+  T  
Sbjct: 187 GIVFVPLTLFGSNPPIPTPVLVKALRVDTGVVELLKSKFTGG 228

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94JF3|GL12_ORYSJ Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1

 Score =  197 bits (500), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 125/191 (65%), Gaps = 1/191 (0%)

Query: 23  ADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTEGNV 81
           AD  PLQDIC+ADL A  +V+GFPCKP   V SDDFF D + +  + SN FG   T   V
Sbjct: 29  ADSPPLQDICVADLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATV 88

Query: 82  HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVT 141
             FPG+NT G+S  R DLA GG+NPPH HPR+SE  +V+ G V+VG  T  N  +SKVV 
Sbjct: 89  SAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTAANRLFSKVVR 148

Query: 142 AGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFL 201
              LF++PRGL HFQLNVG  N  F   F+SQ PG      +LF T P +P EVL KTFL
Sbjct: 149 EKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFL 208

Query: 202 VGDEVINAIKA 212
           +G++ + AIK+
Sbjct: 209 MGEDEVGAIKS 219

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P26759|GER3_WHEAT Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/216 (49%), Positives = 138/216 (63%), Gaps = 7/216 (3%)

Query: 3   SSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFF- 60
           S  +   + A+L+L  +  +++P PLQD C+ADLD K +SVNG  CKP +E   DDF F 
Sbjct: 4   SKNIASGMFAMLLLASAVLSSNPHPLQDFCVADLDGKAVSVNGHMCKPMSE-AGDDFLFS 62

Query: 61  -DLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIV 119
             L++ GN S   G AVT+ NV E+PG NT G+S NRVD A GG NPPH+HPR++E  IV
Sbjct: 63  SKLAKAGNTSTPNGSAVTDLNVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIV 122

Query: 120 IRGTVLVGI---ITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG 176
           ++G +LVGI   + + N  YS+VV AG  FLIPRGL+HFQ NVGK        FNSQ P 
Sbjct: 123 MKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPS 182

Query: 177 TQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKA 212
             FV  +LF + PPIP  VLTK   V   V+  +K+
Sbjct: 183 VVFVPLTLFGSNPPIPKPVLTKALRVEAGVVELLKS 218

Produces developmental and stress-related release of hydrogen peroxide in the apoplast. May play an important role in several aspects of plant growth and defense mechanisms.

Triticum aestivum (taxid: 4565)

EC: 1

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 4

>sp|P92995|GLT1_ARATH Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/209 (48%), Positives = 134/209 (64%), Gaps = 5/209 (2%)

Query: 5   RLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LS 63
           R    +  L ++P  S ++D DPLQD C+ DL A  S+NGFPCK  + V++ DFF+  L 
Sbjct: 12  RSFLLMFCLFVIP--SLSSDSDPLQDFCVGDLKASASINGFPCK--SAVSASDFFYSGLG 67

Query: 64  EEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGT 123
              + SN  G  V   NV  FPG+NT GIS N V+LA GG+NPPHLHPR++E   VI G+
Sbjct: 68  GPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGS 127

Query: 124 VLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSS 183
           V VG ++T+N  +SKV+ AG  F+IPRGLVHFQ NVG+       +FNSQLPG   + S+
Sbjct: 128 VFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPST 187

Query: 184 LFNTTPPIPNEVLTKTFLVGDEVINAIKA 212
           LF + P IPN VLT+ F   D  +  +K+
Sbjct: 188 LFGSKPEIPNAVLTRAFRTDDTTVQNLKS 216

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
255540843	220	Rhicadhesin receptor precursor, putative	0.946	0.963	0.605	1e-71
449441043	213	PREDICTED: germin-like protein subfamily	0.924	0.971	0.576	5e-65
224135689	217	predicted protein [Populus trichocarpa]	0.875	0.903	0.609	8e-65
225456602	225	PREDICTED: germin-like protein subfamily	0.879	0.875	0.626	2e-64
147821092	522	hypothetical protein VITISV_027597 [Viti	0.879	0.377	0.621	3e-64
449440734	221	PREDICTED: germin-like protein subfamily	0.924	0.936	0.596	8e-64
25044823	222	germin-like protein [Ananas comosus]	0.928	0.936	0.561	8e-58
226501030	225	uncharacterized protein LOC100272932 pre	0.955	0.951	0.511	5e-53
196122046	218	germin-like protein 1 [Glycine max]	0.950	0.977	0.493	2e-52
1171937	224	RecName: Full=Oxalate oxidase 2; AltName	0.955	0.955	0.520	4e-52

>gi|255540843|ref|XP_002511486.1| Rhicadhesin receptor precursor, putative [Ricinus communis] gi|223550601|gb|EEF52088.1| Rhicadhesin receptor precursor, putative [Ricinus communis]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/213 (60%), Positives = 162/213 (76%), Gaps = 1/213 (0%)

Query: 5   RLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LS 63
            LLC    LL+LP+  N+ADPDPLQD C+ADL   ISVNGFPCKP  E+TSDDFFFD LS
Sbjct: 8   HLLCSSIVLLLLPMYINSADPDPLQDFCVADLKGSISVNGFPCKPAAEITSDDFFFDGLS 67

Query: 64  EEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGT 123
           +EGN +N FG + T  NV  FPG+NT GIS NRVD + GG+NPPH HPR++E+ +VI G 
Sbjct: 68  KEGNTTNMFGWSATTANVLSFPGLNTLGISMNRVDFSPGGLNPPHSHPRATETGVVIEGK 127

Query: 124 VLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSS 183
           +LVG +TT NVF+SKV++ G +F++PRGLVHFQLNVG+   L F +FNS LPG+  V ++
Sbjct: 128 LLVGFVTTSNVFHSKVLSPGQMFVVPRGLVHFQLNVGQGKALLFTAFNSHLPGSAVVSAN 187

Query: 184 LFNTTPPIPNEVLTKTFLVGDEVINAIKAAITS 216
           LF +TP IPN+VLTK F VGD++IN IK+   S
Sbjct: 188 LFTSTPKIPNQVLTKAFQVGDDIINTIKSKFGS 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441043|ref|XP_004138293.1| PREDICTED: germin-like protein subfamily T member 1-like [Cucumis sativus] gi|449477612|ref|XP_004155071.1| PREDICTED: germin-like protein subfamily T member 1-like [Cucumis sativus]

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 6   LLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSE 64
           LL     L++LP  S++ DPDPLQD C+ADL+A +SV GFPCKP +EVT DDFF+D LS+
Sbjct: 2   LLVSFIFLILLPHPSSSTDPDPLQDFCVADLNATVSVTGFPCKPISEVTVDDFFYDGLSK 61

Query: 65  EGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTV 124
           EGN  N FG  +T GNVH  PG+NT G+S NR+DLA GG+NPPHLHPR+SE  IV++G V
Sbjct: 62  EGNTKNPFGFGLTPGNVHALPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVLKGRV 121

Query: 125 LVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSL 184
           LVG +T DNV+Y KV+  G LF+IPR LVHFQ NVG++  +    FNSQLPG   V  +L
Sbjct: 122 LVGFLTVDNVYYHKVLKVGELFIIPRALVHFQYNVGRKKAVVLAGFNSQLPGGVLVAGNL 181

Query: 185 FNTTPPIPNEVLTKTFLVGDEVINAIKA 212
           F + PPIPN++L+K   V D+V+  IK+
Sbjct: 182 FASNPPIPNKILSKALQVNDDVVKTIKS 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135689|ref|XP_002322136.1| predicted protein [Populus trichocarpa] gi|222869132|gb|EEF06263.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 155/197 (78%), Gaps = 1/197 (0%)

Query: 21  NAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTEG 79
           N+ADPD LQD C+ADL A +SVNGFPCKPE +VTSDDFFFD LS+EGN +N FG +VT  
Sbjct: 21  NSADPDLLQDFCVADLKAPLSVNGFPCKPEAKVTSDDFFFDGLSKEGNTTNIFGWSVTAA 80

Query: 80  NVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKV 139
           NV  FPG+N+ GIS NRVD A GG+NPPH HPR++E+ ++I G +LVG +TT NVF+SKV
Sbjct: 81  NVLAFPGLNSLGISMNRVDFAPGGLNPPHSHPRATETGVIIEGKLLVGFVTTSNVFHSKV 140

Query: 140 VTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKT 199
           +T G +F++PRGLVHFQLNVG+   L F +FNS LPG+  V ++LF + P IP++VLTK 
Sbjct: 141 LTVGQMFVVPRGLVHFQLNVGEGKALLFTAFNSHLPGSAVVPTTLFASRPSIPDDVLTKA 200

Query: 200 FLVGDEVINAIKAAITS 216
           F VG++VI+ IK+  +S
Sbjct: 201 FQVGNDVIDNIKSKFSS 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456602|ref|XP_002267507.1| PREDICTED: germin-like protein subfamily T member 2-like [Vitis vinifera]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/198 (62%), Positives = 149/198 (75%), Gaps = 1/198 (0%)

Query: 20  SNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTE 78
           S +AD DPLQD CIADL+A + VNGFPCKP + VTSDDFFFD LS+EG+ +N FG +VT 
Sbjct: 28  SRSADSDPLQDFCIADLNATVIVNGFPCKPASAVTSDDFFFDGLSKEGSTANIFGSSVTR 87

Query: 79  GNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSK 138
           GNV  FPGVNT GIS NRVD+A GG+N PH HPRSSES +VI+G VLVG +TT NVFYSK
Sbjct: 88  GNVLSFPGVNTLGISMNRVDIAPGGMNAPHWHPRSSESGVVIQGRVLVGFMTTGNVFYSK 147

Query: 139 VVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTK 198
            +T G +F+IP GLVHFQ N+G+E  L F +FNSQ PG+     +LF +TP IPN+VLTK
Sbjct: 148 NLTVGQMFVIPIGLVHFQQNIGEEKALLFTAFNSQNPGSVVASVNLFGSTPSIPNDVLTK 207

Query: 199 TFLVGDEVINAIKAAITS 216
            F V   V+N IK+   S
Sbjct: 208 AFQVDANVVNGIKSKFGS 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821092|emb|CAN75382.1| hypothetical protein VITISV_027597 [Vitis vinifera]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 123/198 (62%), Positives = 148/198 (74%), Gaps = 1/198 (0%)

Query: 20  SNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTE 78
           S +AD DPLQD C ADL+A + VNGFPCKP + VTSDDFFFD LS+EG+ +N FG +VT 
Sbjct: 325 SRSADSDPLQDFCXADLNATVIVNGFPCKPASAVTSDDFFFDGLSKEGSTANIFGSSVTR 384

Query: 79  GNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSK 138
           GNV  FPGVNT GIS NRVD+A GG+N PH HPRSSES +VI+G VLVG +TT NVFYSK
Sbjct: 385 GNVLSFPGVNTLGISMNRVDIAPGGMNAPHWHPRSSESGVVIQGRVLVGFMTTGNVFYSK 444

Query: 139 VVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTK 198
            +T G +F+IP GLVHFQ N+G+E  L F +FNSQ PG+     +LF +TP IPN+VLTK
Sbjct: 445 NLTVGQMFVIPIGLVHFQQNIGEEKALLFTAFNSQNPGSVVASVNLFGSTPSIPNDVLTK 504

Query: 199 TFLVGDEVINAIKAAITS 216
            F V   V+N IK+   S
Sbjct: 505 AFQVDANVVNGIKSKFGS 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440734|ref|XP_004138139.1| PREDICTED: germin-like protein subfamily T member 2-like [Cucumis sativus] gi|449477347|ref|XP_004154997.1| PREDICTED: germin-like protein subfamily T member 2-like [Cucumis sativus]

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 124/208 (59%), Positives = 156/208 (75%), Gaps = 1/208 (0%)

Query: 6   LLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSE 64
           +L C   LL+LP  S +ADPDPLQD C+ADL+A +S+NGFPCKP +EVT+DDFFFD LS+
Sbjct: 11  MLVCFIILLLLPYPSLSADPDPLQDFCVADLNATVSLNGFPCKPASEVTADDFFFDGLSK 70

Query: 65  EGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTV 124
           EGN  N FG  VT+GNV  FPG+NT G+S NRVDLA GGIN PH HPR++ES +VI+G V
Sbjct: 71  EGNTDNPFGFGVTQGNVLTFPGLNTLGLSMNRVDLARGGINAPHSHPRATESIVVIKGKV 130

Query: 125 LVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSL 184
           LVG ++T +V+Y KV+T G +F++PRGLVHFQ NVG        +FNSQLPG   V  +L
Sbjct: 131 LVGFVSTSSVYYYKVLTVGQMFVVPRGLVHFQYNVGHGKATLITAFNSQLPGAVVVSRTL 190

Query: 185 FNTTPPIPNEVLTKTFLVGDEVINAIKA 212
           F + PP+P E+LTK F V   VIN+IK+
Sbjct: 191 FASNPPLPVEILTKAFQVDASVINSIKS 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25044823|gb|AAM28275.1| germin-like protein [Ananas comosus]

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 146/210 (69%), Gaps = 2/210 (0%)

Query: 5   RLLCCLTALLILPLSSNAADPDPLQDICIADLDA-KISVNGFPCKPETEVTSDDFFFD-L 62
           R L  L A + L +SS  ADPDPLQD C+A+L A  I+V+GFPCKP + V SDDFFF  L
Sbjct: 9   RSLLILFATIFLIISSCRADPDPLQDFCVANLQATDITVDGFPCKPTSSVVSDDFFFSGL 68

Query: 63  SEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRG 122
           S  GN +N FG  +T+ NV  FPG+NT G+S NRVDL  GGINP H HPR++E   +++G
Sbjct: 69  SAPGNTNNMFGSNITQANVANFPGLNTLGLSMNRVDLVPGGINPLHSHPRATELGFILQG 128

Query: 123 TVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHS 182
            VLVG ++T N FYSK V AG  F+IPRGLVHFQ NVG  N +   +F+SQLPG      
Sbjct: 129 EVLVGFVSTANAFYSKTVKAGESFVIPRGLVHFQFNVGTGNAVVITAFDSQLPGVVLAPF 188

Query: 183 SLFNTTPPIPNEVLTKTFLVGDEVINAIKA 212
           +LF +TP IPN+VLTKTF V   VIN +K+
Sbjct: 189 TLFGSTPAIPNDVLTKTFQVDQSVINLLKS 218

Source: Ananas comosus

Species: Ananas comosus

Genus: Ananas

Family: Bromeliaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501030|ref|NP_001140856.1| uncharacterized protein LOC100272932 precursor [Zea mays] gi|194701474|gb|ACF84821.1| unknown [Zea mays] gi|414872223|tpg|DAA50780.1| TPA: germin-like protein 2 [Zea mays]

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 113/221 (51%), Positives = 146/221 (66%), Gaps = 7/221 (3%)

Query: 3   SSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFF-- 60
           +  L   LT L++ PL + A DPDPLQD C+ADL+ K SVNG+PC+P +    D F F  
Sbjct: 5   TKALASLLTMLVLAPLLAMATDPDPLQDFCVADLNGKPSVNGYPCQPPSS-AGDQFLFST 63

Query: 61  DLSEEGN-LSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIV 119
            ++  G+ L+N  G  VTE +V E+PGVNT G+S NRVD A GG NPPH+HPR++E  +V
Sbjct: 64  KIATGGDPLANPNGSNVTELDVSEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGLV 123

Query: 120 IRGTVLVGII---TTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG 176
            RG +LVGI+    + N +YSKVV AG  F+IPRGLVHFQ NVGKE+     SFNSQ PG
Sbjct: 124 TRGELLVGIVGSLDSGNRYYSKVVRAGETFVIPRGLVHFQFNVGKEDATMVVSFNSQKPG 183

Query: 177 TQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSA 217
             FV  +LF ++PPIP  VL+K   V   V++ IK+  T  
Sbjct: 184 IIFVPLTLFGSSPPIPTPVLSKALRVDASVVDLIKSKFTGG 224

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|196122046|gb|ACG69497.1| germin-like protein 1 [Glycine max]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 143/215 (66%), Gaps = 2/215 (0%)

Query: 1   MISSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFF 60
           M  +  L  +T  L+L   S A+DPDPLQD+C+ADL + + VNGF CK   +V + DFF 
Sbjct: 1   MKLTGFLQAVTLALVLATVS-ASDPDPLQDLCVADLASAVKVNGFTCKDAAKVNASDFFS 59

Query: 61  D-LSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIV 119
           D L++ G  +N +G  VT  NV + PG+NT G+S +R+D A GGINPPH HPR++E   V
Sbjct: 60  DILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGINPPHTHPRATEVVFV 119

Query: 120 IRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQF 179
           + GT+ VG ITT NV  SK ++ G +F+ P+GLVHFQ N GKE      +FNSQLPGTQ 
Sbjct: 120 LEGTLDVGFITTANVLISKSISKGEIFVFPKGLVHFQKNNGKEQASVIAAFNSQLPGTQS 179

Query: 180 VHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAI 214
           +  +LF  TPP+P+ VLTK F VG + +  IK+ +
Sbjct: 180 IALTLFAATPPVPDNVLTKAFQVGTKEVEKIKSRL 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1171937|sp|P45851.1|OXO2_HORVU RecName: Full=Oxalate oxidase 2; AltName: Full=Germin; Flags: Precursor gi|516871|gb|AAA20245.1| germin subunit [Hordeum vulgare subsp. vulgare] gi|326521690|dbj|BAK00421.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 143/221 (64%), Gaps = 7/221 (3%)

Query: 3   SSRLLCCLTALLILPLSSNAADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFF- 60
           S  L   L A+L+L  +  A+DPDPLQD C+ADLD K +SVNG PCKP +E   DDF F 
Sbjct: 4   SKTLAVSLFAVLLLAPAVLASDPDPLQDFCVADLDGKAVSVNGHPCKPMSE-AGDDFLFS 62

Query: 61  -DLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIV 119
             L++ GN S   G AVTE +V E+PG NT G+S NRVD A GG NPPH+HPR++E  IV
Sbjct: 63  SKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIV 122

Query: 120 IRGTVLVGII---TTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG 176
           ++G +LVGI+    + N  YS+VV AG  FLIPRGL+HFQ NVGK       SFNSQ PG
Sbjct: 123 MKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPG 182

Query: 177 TQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSA 217
             FV  +LF + PPIP  VLTK   V   V+  +K+   + 
Sbjct: 183 IVFVPLTLFGSNPPIPTPVLTKALRVEAGVVELLKSKFAAG 223

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2011306	220	AT1G18980 [Arabidopsis thalian	0.843	0.859	0.526	1.1e-50
TAIR|locus:2011291	220	GLP4 "germin-like protein 4" [	0.843	0.859	0.505	2e-47
TAIR|locus:2079582	220	GLP10 "germin-like protein 10"	0.852	0.868	0.481	1e-45
TAIR|locus:2827077	219	GL22 "germin-like protein subf	0.870	0.890	0.464	1.3e-45
TAIR|locus:2012260	219	GLP5 "germin-like protein 5" [	0.857	0.876	0.471	3.4e-45
TAIR|locus:2074489	219	GLP8 "germin-like protein 8" [	0.843	0.863	0.465	3.2e-42
TAIR|locus:2074514	229	AT3G05950 [Arabidopsis thalian	0.861	0.842	0.429	4.3e-38
TAIR|locus:2146759	213	AT5G26700 [Arabidopsis thalian	0.830	0.873	0.4	1.9e-37
TAIR|locus:2027232	227	AT1G74820 [Arabidopsis thalian	0.843	0.832	0.432	6.3e-37
TAIR|locus:2177167	222	AT5G39130 [Arabidopsis thalian	0.875	0.882	0.412	1e-36

TAIR|locus:2011306 AT1G18980 [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 101/192 (52%), Positives = 132/192 (68%)

Query:    22 AADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTEGN 80
             ++D DPLQD C+ DL A  S+NGFPCK  + V++ DFFF  L    N S   G AV+  N
Sbjct:    27 SSDSDPLQDFCVGDLKASPSINGFPCK--SSVSASDFFFSGLGGPLNTSTPNGVAVSPAN 84

Query:    81 VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVV 140
             V  FPG+NT G+S N V+ A GG+NPPH HPR++E+ +VI G+V VG +TT+N  +SKV+
Sbjct:    85 VLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVL 144

Query:   141 TAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTF 200
              AG +F++PRGLVHFQ NVGK       SFNSQLPG+  + S+LF + P IPN VLTKTF
Sbjct:   145 NAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTF 204

Query:   201 LVGDEVINAIKA 212
                D  +N +K+
Sbjct:   205 RTDDVTVNKLKS 216

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2011291 GLP4 "germin-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 97/192 (50%), Positives = 127/192 (66%)

Query:    22 AADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTEGN 80
             ++D DPLQD C+ DL A  S+NGFPCK  + V++ DFF+  L    + SN  G  V   N
Sbjct:    27 SSDSDPLQDFCVGDLKASASINGFPCK--SAVSASDFFYSGLGGPLDTSNPNGVTVAPAN 84

Query:    81 VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVV 140
             V  FPG+NT GIS N V+LA GG+NPPHLHPR++E   VI G+V VG ++T+N  +SKV+
Sbjct:    85 VLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVL 144

Query:   141 TAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTF 200
              AG  F+IPRGLVHFQ NVG+       +FNSQLPG   + S+LF + P IPN VLT+ F
Sbjct:   145 NAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVLTRAF 204

Query:   201 LVGDEVINAIKA 212
                D  +  +K+
Sbjct:   205 RTDDTTVQNLKS 216

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2079582 GLP10 "germin-like protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 93/193 (48%), Positives = 126/193 (65%)

Query:    22 AADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFF-DLSEEGNLSNAFGRAVTEGN 80
             A DPD LQD+C+AD  + I VNGF CKPE+ +T+ DFFF  + +   ++N  G AVT  N
Sbjct:    21 AYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGAN 80

Query:    81 VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVV 140
             V +  G+NT G+S  R+D A GG+NPPH HPR++E   V+ G + VG ITT N  ++K V
Sbjct:    81 VEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFAKTV 140

Query:   141 TAGMLFLIPRGLVHFQLNVGKEN-VLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKT 199
               G +F+ PRGL+H+Q N  K        +FNSQLPGTQ + ++LF  TP IP+ VLT T
Sbjct:   141 KKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTT 200

Query:   200 FLVGDEVINAIKA 212
             F +G + I  IK+
Sbjct:   201 FQIGTKEIEKIKS 213

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2827077 GL22 "germin-like protein subfamily 2 member 2 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 91/196 (46%), Positives = 125/196 (63%)

Query:    22 AADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFF-DLSEEGNLSNAFGRAVTEGN 80
             A DPD LQD+C+AD      +NGFPCK    +T  DFFF  +S+   +++  G AVT  N
Sbjct:    22 AYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGAN 81

Query:    81 VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVV 140
             V + PG+NT  +S  R+D A GG+NPPH HPR++E   V+ G + VG ITT N  ++K +
Sbjct:    82 VEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITTANKLFTKTI 141

Query:   141 TAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTF 200
               G +F+ PRGLVHFQ N GK       +FNSQLPGT  V ++LF   P +P +VLTKTF
Sbjct:   142 KIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTF 201

Query:   201 LVGDEVINAIKAAITS 216
              VG ++++ IK  + +
Sbjct:   202 QVGSKMVDKIKERLAT 217

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IMP

GO:2000280 "regulation of root development" evidence=IMP

TAIR|locus:2012260 GLP5 "germin-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 91/193 (47%), Positives = 125/193 (64%)

Query:    21 NAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTEG 79
             ++ADPD LQD+C+ADL + I +NGFPCK    VTS DFF   L++ G  +N FG  VT  
Sbjct:    21 SSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGA 80

Query:    80 NVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKV 139
             NV   PG+NT G+S +R+D A GG+NPPH HPR++E   V+ GT+ VG +TT N   S+ 
Sbjct:    81 NVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLISQS 140

Query:   140 VTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKT 199
             +  G +F  P+GLVHFQ N G        +FNSQLPGTQ + ++LF +TPP+P+ +L + 
Sbjct:   141 LKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFGSTPPVPDNILAQA 200

Query:   200 FLVGDEVINAIKA 212
             F      +  IK+
Sbjct:   201 FQTSPGTVKHIKS 213

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IMP

GO:2000280 "regulation of root development" evidence=IMP

TAIR|locus:2074489 GLP8 "germin-like protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 89/191 (46%), Positives = 120/191 (62%)

Query:    23 ADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFF-DLSEEGNLSNA-FGRAVTEGN 80
             AD + LQD C+ADL   + VNG+PCK   +VT +DF+F  L+     +N+  G AVT  N
Sbjct:    22 ADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGAN 81

Query:    81 VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVV 140
             V + PG+NT G+S +R+D A GG+NPPHLHPR+SE+  V+ G + VG +TT     SK V
Sbjct:    82 VEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHV 141

Query:   141 TAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTF 200
               G +F+ P+ L+HFQ N  K       +F+SQLPGTQ V  SLF + PPIP+++L K F
Sbjct:   142 NKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAF 201

Query:   201 LVGDEVINAIK 211
                   I  IK
Sbjct:   202 GAAAPEIQKIK 212

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2074514 AT3G05950 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 85/198 (42%), Positives = 121/198 (61%)

Query:    24 DPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTEGNV 81
             DP PLQD C+A  DA  + VNG  CK    V ++DFF   L+  GN  N  G  VT  NV
Sbjct:    26 DPSPLQDFCVAVDDASGVFVNGKFCKDPKYVKAEDFFTSGLNIAGNTINRVGSNVTNVNV 85

Query:    82 HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD---NVFYSK 138
              + PG+NT G+S  R+D A GG NPPH HPR++E  +V+ GT+LVG +T++   N  +SK
Sbjct:    86 DKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSK 145

Query:   139 VVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTK 198
             V+  G +F+ P G++HFQ+NVG+ N + F    SQ PGT  +  ++F + P I  E+L K
Sbjct:   146 VLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAK 205

Query:   199 TFLVGDEVINAIKAAITS 216
              F +   V+  ++A  +S
Sbjct:   206 AFQLDVNVVKYLEARFSS 223

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2146759 AT5G26700 [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 76/190 (40%), Positives = 117/190 (61%)

Query:    23 ADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTEGNV 81
             A  + LQD+C+ADL   + VNG+ CK  T++T +DF+F  L+     + + G  VT  NV
Sbjct:    20 ASAEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANV 79

Query:    82 HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVT 141
              + PG+NT G+S +R+D A  G+NPPH+HPR+SE   V+ G + VG +TT     +K + 
Sbjct:    80 EKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLIAKNLN 139

Query:   142 AGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFL 201
              G +F  P+GL+HFQ N+         +F+SQLPGTQ + +SLF     +P+++L K+F 
Sbjct:   140 KGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGA---LPDDILAKSFQ 196

Query:   202 VGDEVINAIK 211
             +  + +  IK
Sbjct:   197 LKHKQVKKIK 206

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2027232 AT1G74820 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 83/192 (43%), Positives = 114/192 (59%)

Query:    26 DPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTEGNVHEF 84
             +P QD C+ADL A  + +G+PCK  ++VTS+DFF+  L+   N SN  G A    N+  F
Sbjct:    38 NPFQDFCVADLQATPTNSGYPCK--SQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTF 95

Query:    85 PGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGM 144
             PG+NT GIS   V +A GG N PH HP  +E+ +VI G+VLVG +TT+   YSKV+  G 
Sbjct:    96 PGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTNYTLYSKVIGPGD 155

Query:   145 LFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGD 204
             +F+IP GL+H++ NVGK            LP    V  +L  T P IPNEVL   F    
Sbjct:   156 MFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADS 215

Query:   205 EVINAIKAAITS 216
             + IN +++  T+
Sbjct:   216 KTINMLRSKFTA 227

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2177167 AT5G39130 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 83/201 (41%), Positives = 120/201 (59%)

Query:    21 NAADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTE 78
             NA DP PLQD C+A  D K + VNG  CK    V + DFFF  L+  GN +N  G  VT 
Sbjct:    21 NAYDPSPLQDFCVAIDDLKGVFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTT 80

Query:    79 GNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD---NVF 135
              NV + PG+NT GIS  R+D A  G NPPH HPR SE  +++ GT+ VG ++++   N  
Sbjct:    81 VNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRL 140

Query:   136 YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEV 195
             ++KV+  G +F+ P G++HFQLN+GK   + F   +SQ  G   + +++F + PPI  E+
Sbjct:   141 FAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPEL 200

Query:   196 LTKTFLVGDEVINAIKAAITS 216
             L + F +   V+  ++A   S
Sbjct:   201 LARAFQLDANVVKELQAKFGS 221

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94EG3	NEC1_NICLS	1, ., 1, 5, ., 1, ., 1	0.5052	0.8437	0.8253	N/A	no
Q9LMC9	GLT2_ARATH	No assigned EC number	0.4976	0.9285	0.9454	yes	no
P45850	OXO1_HORVU	1, ., 2, ., 3, ., 4	0.5357	0.8437	0.9402	N/A	no
P45851	OXO2_HORVU	1, ., 2, ., 3, ., 4	0.5203	0.9553	0.9553	N/A	no
P15290	GER2_WHEAT	1, ., 2, ., 3, ., 4	0.5158	0.9553	0.9553	N/A	no
Q6I544	GL52_ORYSJ	No assigned EC number	0.4974	0.875	0.8868	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
smart00835	146	smart00835, Cupin_1, Cupin	3e-29
pfam00190	139	pfam00190, Cupin_1, Cupin	7e-27
COG0662	127	COG0662, {ManC}, Mannose-6-phosphate isomerase [Ca	3e-07
pfam07883	70	pfam07883, Cupin_2, Cupin domain	9e-07
COG1917	131	COG1917, COG1917, Uncharacterized conserved protei	9e-06
TIGR03404	367	TIGR03404, bicupin_oxalic, bicupin, oxalate decarb	3e-04
TIGR03404	367	TIGR03404, bicupin_oxalic, bicupin, oxalate decarb	0.003

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score =  106 bits (266), Expect = 3e-29
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 2/146 (1%)

Query: 63  SEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRG 122
            E     +  G  + E +   FP +N  GIS  RV+L  GG+ PPH HPR++E   V+RG
Sbjct: 1   LEPRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRG 60

Query: 123 TVLVGIITT-DNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH 181
              VG++    N  Y   +  G +F++P+G  HFQ+N G EN+ F  +FN+  P  +F  
Sbjct: 61  EGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFV-AFNTNDPNRRFFL 119

Query: 182 SSLFNTTPPIPNEVLTKTFLVGDEVI 207
           +   +    +P EVL   F V  E +
Sbjct: 120 AGRNSVLRGLPPEVLAAAFGVSAEEV 145

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score =  100 bits (250), Expect = 7e-27
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 16/152 (10%)

Query: 60  FDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDL-AVGGINPPHLHPRSSESSI 118
           F+L E   + N+ G  +   N +  PG+     S  R DL   GG+  PH HP ++E   
Sbjct: 1   FNLLEPSPVFNSEGGRLETANPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILY 60

Query: 119 VIRGTVLVGIITTDNVF--YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG 176
           V++G   VG +     F  + + +  G +F++P G  H+Q N G   +    +F++  P 
Sbjct: 61  VLQGRGRVGFVVPGCGFRVFHQKLREGDVFVVPAGFAHWQYNSGDPGLELV-AFDTNNPA 119

Query: 177 TQFVHSSLFNTTPPIPNEVLTKTFLVGDEVIN 208
            Q            +P EVL + F +      
Sbjct: 120 NQ------------LPREVLARAFFLAGNEAR 139

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|223734 COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 93  STNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGL 152
           S  R+ +  G     H H    E   V+ GT   G +T         V AG    IP G 
Sbjct: 37  SIARILVKPGEEISLHHHHHRDEHWYVLEGT---GKVTIGGE--EVEVKAGDSVYIPAGT 91

Query: 153 VHFQLNVGKENVLFF 167
            H   N GK  ++  
Sbjct: 92  PHRVRNTGKIPLVLI 106

Length = 127

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 96  RVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHF 155
            V L  G  +PPH HP   E   V+ G    G +T D      V+ AG     P G+ H 
Sbjct: 2   LVTLPPGESSPPHRHPGE-EFFYVLEGE---GELTVDGEEV--VLKAGDSVYFPAGVPHR 55

Query: 156 QLNVGKENVLFF 167
             N G E     
Sbjct: 56  FRNTGDEPARLL 67

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 82  HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVT 141
              P    + +S   V    G + P H HP   ++  V+ G   V     +     K + 
Sbjct: 33  RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTV---QLEGE--KKELK 87

Query: 142 AGMLFLIPRGLVHFQLNVGKENVLF 166
           AG + +IP G+VH    V  E ++ 
Sbjct: 88  AGDVIIIPPGVVHGLKAVEDEPMVL 112

Length = 131

>gnl|CDD|132445 TIGR03404, bicupin_oxalic, bicupin, oxalate decarboxylase family

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 21/141 (14%)

Query: 78  EGNVHEFP------GVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITT 131
           E  V + P      GVN        + L  G I   H H + +E + V+ G+  +  +  
Sbjct: 55  EVTVRDLPISTAIAGVN--------MRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDE 105

Query: 132 DNVFYSKVVTAGMLFLIPRGLVH-FQ-LNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTP 189
           +   Y   V AG L+  P G+ H  Q L+ G E +L F   N    GT F+ +     TP
Sbjct: 106 NGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDDGNFSEDGT-FLVTDWLAHTP 164

Query: 190 PIPNEVLTKTFLVGDEVINAI 210
               +VL K F V +   + +
Sbjct: 165 K---DVLAKNFGVPESAFDNL 182

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins. Length = 367

>gnl|CDD|132445 TIGR03404, bicupin_oxalic, bicupin, oxalate decarboxylase family

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 89  TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLI 148
           ++ I+   V +  G +   H HP + E    I+G   + +        +    AG +  +
Sbjct: 242 SKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYV 301

Query: 149 PRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFN---TTPPIPNEVLTKTFLVGDE 205
           PR + H+  N G E ++F   F +      F   SL      TPP   +++     + DE
Sbjct: 302 PRNMGHYVENTGDETLVFLEVFKADR----FADVSLNQWLALTPP---QLVAAHLNLDDE 354

Query: 206 VINAIK 211
           VI+++K
Sbjct: 355 VIDSLK 360

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins. Length = 367

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PLN00212	493	glutelin; Provisional	99.96
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.96
PLN00212	493	glutelin; Provisional	99.94
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.94
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.92
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.87
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.78
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.44
COG1917	131	Uncharacterized conserved protein, contains double	99.35
PRK04190	191	glucose-6-phosphate isomerase; Provisional	99.35
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.31
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.27
COG3837	161	Uncharacterized conserved protein, contains double	99.06
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.03
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.99
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.97
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.96
PRK11171	266	hypothetical protein; Provisional	98.94
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.87
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.82
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.74
PRK11171	266	hypothetical protein; Provisional	98.71
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.7
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.66
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.48
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.48
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.43
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.34
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.3
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	98.29
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	98.2
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	98.19
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	98.15
COG1791	181	Uncharacterized conserved protein, contains double	98.15
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.14
COG4297	163	Uncharacterized protein containing double-stranded	98.12
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	98.02
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	97.99
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	97.97
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	97.93
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.93
PRK13501	290	transcriptional activator RhaR; Provisional	97.92
PRK13500	312	transcriptional activator RhaR; Provisional	97.89
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	97.81
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.78
PRK13503	278	transcriptional activator RhaS; Provisional	97.76
PRK13502	282	transcriptional activator RhaR; Provisional	97.72
KOG2107	179	consensus Uncharacterized conserved protein, conta	97.49
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.42
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	97.41
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	97.41
COG3257	264	GlxB Uncharacterized protein, possibly involved in	97.39
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.26
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	97.1
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	96.98
COG3450	116	Predicted enzyme of the cupin superfamily [General	96.85
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	96.83
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	96.65
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	96.51
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	96.36
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	96.34
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	95.36
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	95.19
PF12852	186	Cupin_6: Cupin	95.11
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	95.0
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	94.84
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	94.67
TIGR02466	201	conserved hypothetical protein. This family consis	94.53
PF07385	225	DUF1498: Protein of unknown function (DUF1498); In	94.4
PLN02658	435	homogentisate 1,2-dioxygenase	94.34
COG1741	276	Pirin-related protein [General function prediction	94.1
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	94.01
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	93.95
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	93.67
PRK12335	287	tellurite resistance protein TehB; Provisional	93.61
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	92.94
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	92.71
PRK09391	230	fixK transcriptional regulator FixK; Provisional	92.46
COG5553	191	Predicted metal-dependent enzyme of the double-str	92.46
PRK10579	94	hypothetical protein; Provisional	92.25
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	92.16
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	91.71
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	91.27
COG3806	216	ChrR Transcriptional activator [Transcription]	91.27
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	91.23
PF06172	139	Cupin_5: Cupin superfamily (DUF985); InterPro: IPR	90.71
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	90.03
COG3822	225	ABC-type sugar transport system, auxiliary compone	89.96
PRK15131	389	mannose-6-phosphate isomerase; Provisional	89.74
PLN02288	394	mannose-6-phosphate isomerase	89.39
PF07847	200	DUF1637: Protein of unknown function (DUF1637); In	89.12
COG3257	264	GlxB Uncharacterized protein, possibly involved in	88.73
KOG3706	629	consensus Uncharacterized conserved protein [Funct	88.07
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	88.07
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	86.47
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	86.39
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	86.37
PF14525	172	AraC_binding_2: AraC-binding-like domain	85.84
COG2850	383	Uncharacterized conserved protein [Function unknow	85.67
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	84.32
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	83.99
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	83.6
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	82.46
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	80.35

>PLN00212 glutelin; Provisional

Probab=99.96  E-value=3.3e-28  Score=227.35  Aligned_cols=155  Identities=17%  Similarity=0.315  Sum_probs=136.8

Q ss_pred             CcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC-CeEEEEEECCCC
Q 040384           66 GNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSKVVTAGM  144 (224)
Q Consensus        66 ~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~~~~~l~~GD  144 (224)
                      .+++++.+|+++.+++.++|+|+++|+|+.+++|.||||.+||||++|+|++||++|+++++||+++ ++++..+|++||
T Consensus       322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd  401 (493)
T PLN00212        322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ  401 (493)
T ss_pred             cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence            4567899999999999999999999999999999999999999999999999999999999999977 688999999999


Q ss_pred             EEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384          145 LFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR  222 (224)
Q Consensus       145 v~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r  222 (224)
                      +|+||+|++|.... +++...++++..+.++-...++  .++|++   +|.+||++||+++.+++++||.++.+...+.+
T Consensus       402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n~~~e~~~~~  477 (493)
T PLN00212        402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNNRGDELGAFT  477 (493)
T ss_pred             EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhcccCceeecC
Confidence            99999999998754 4666777776655554333332  678997   99999999999999999999999988888887


Q ss_pred             CC
Q 040384          223 PK  224 (224)
Q Consensus       223 ~~  224 (224)
                      |+
T Consensus       478 p~  479 (493)
T PLN00212        478 PR  479 (493)
T ss_pred             CC
Confidence            73

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.96  E-value=1.2e-27  Score=217.89  Aligned_cols=163  Identities=21%  Similarity=0.319  Sum_probs=145.1

Q ss_pred             CCCCCCCCCccCCCeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCe
Q 040384           44 GFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGT  123 (224)
Q Consensus        44 g~~ck~~~~vt~~df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~  123 (224)
                      ..+-+.+..-.++.|+|.+....+ ....||+++.+++.+||+++  ++++++++++||+++++|||++++|+.||++|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~  276 (367)
T TIGR03404       200 QEAVTGPAGEVPGPFTYHLSEQKP-KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ  276 (367)
T ss_pred             cccCcCCCCCCCccEEEEhhhCCc-eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence            344455666667779985554443 35678889999999999999  699999999999999999999999999999999


Q ss_pred             EEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCC
Q 040384          124 VLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVG  203 (224)
Q Consensus       124 ~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~  203 (224)
                      +++++.+++++.+...+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+ +.   +|++||+++|+++
T Consensus       277 ~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l-~~---~p~~vl~~~~~~~  352 (367)
T TIGR03404       277 ARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWL-AL---TPPQLVAAHLNLD  352 (367)
T ss_pred             EEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHH-hh---CCHHHHHHHhCcC
Confidence            9999998887777899999999999999999999999999999999999999999999887 54   9999999999999


Q ss_pred             HHHHHHHHhc
Q 040384          204 DEVINAIKAA  213 (224)
Q Consensus       204 ~~~v~~l~~~  213 (224)
                      ++++++|++.
T Consensus       353 ~~~~~~l~~~  362 (367)
T TIGR03404       353 DEVIDSLKKE  362 (367)
T ss_pred             HHHHHhcccc
Confidence            9999999865

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PLN00212 glutelin; Provisional

Probab=99.94  E-value=3.5e-26  Score=213.79  Aligned_cols=149  Identities=15%  Similarity=0.196  Sum_probs=128.9

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-----EE--------
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-----FY--------  136 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-----~~--------  136 (224)
                      ...|| +++.+..+.+.|+|+|+++.|++|+|+|+.+|||| ++++++||++|++.+|++.|++.     .+        
T Consensus        59 ~se~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~  136 (493)
T PLN00212         59 RSEAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQ  136 (493)
T ss_pred             cccCc-eeeecCCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccc
Confidence            45566 77888899999999999999999999999999999 99999999999999999986531     11        


Q ss_pred             ------------EEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCc--------ceehh---------------
Q 040384          137 ------------SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG--------TQFVH---------------  181 (224)
Q Consensus       137 ------------~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg--------~~~~~---------------  181 (224)
                                  .+.+++||++++|+|++||++|+|+++++++++++..++.        .+.++               
T Consensus       137 ~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~  216 (493)
T PLN00212        137 SQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIE  216 (493)
T ss_pred             ccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCcccccccccccc
Confidence                        1599999999999999999999999999988888755432        33343               


Q ss_pred             ----hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceecC
Q 040384          182 ----SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP  223 (224)
Q Consensus       182 ----~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r~  223 (224)
                          .++|++   |++++|++||+++.++++||+..++++|.|||-
T Consensus       217 ~~~~~nifsG---F~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv  259 (493)
T PLN00212        217 QHSGQNIFSG---FSTELLSEALGINAQVAKRLQSQNDQRGEIIRV  259 (493)
T ss_pred             ccccCchhhc---CCHHHHHHHHCCCHHHHHHHhccccCCccEEEE
Confidence                349997   999999999999999999999999899999874

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.94  E-value=5.9e-26  Score=181.46  Aligned_cols=136  Identities=30%  Similarity=0.550  Sum_probs=114.1

Q ss_pred             eeccCCCcccCCCCceEEEeecccCCCCccc-cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-----
Q 040384           60 FDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQ-GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-----  133 (224)
Q Consensus        60 f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~-gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-----  133 (224)
                      |++..+.+..+..+|+++.++..++|.+.++ ++++.+..|+||++.+|||| +|+|+.||++|+++++++.+++     
T Consensus         1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~   79 (144)
T PF00190_consen    1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEF   79 (144)
T ss_dssp             EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEE
T ss_pred             CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccc
Confidence            3445555566778899999999999966554 56667777899999999999 9999999999999999999876     


Q ss_pred             eEEEEE--ECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHH
Q 040384          134 VFYSKV--VTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVIN  208 (224)
Q Consensus       134 ~~~~~~--l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~  208 (224)
                      +....+  +++||++++|+|++||+.|.|+++...+.+|++.++..+            +|+||++++|++++++++
T Consensus        80 ~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~~  144 (144)
T PF00190_consen   80 RDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEVQ  144 (144)
T ss_dssp             EEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHHB
T ss_pred             eeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcCC
Confidence            355566  999999999999999999999888888888888777664            789999999999999863

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.92  E-value=5.9e-24  Score=193.79  Aligned_cols=146  Identities=25%  Similarity=0.349  Sum_probs=125.5

Q ss_pred             CeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEE
Q 040384           57 DFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFY  136 (224)
Q Consensus        57 df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~  136 (224)
                      -|.|.+++..   -..||++++++..+||++++  +++.++++.||++++|||| ++.|++||++|++++++++++++.+
T Consensus        37 ~~~~~~~~~~---~~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g~~~  110 (367)
T TIGR03404        37 KWSFSDSHNR---LENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENGRNY  110 (367)
T ss_pred             eeeeccccCc---cccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCCcEE
Confidence            3555665543   23688999999999999994  7999999999999999999 5689999999999999999888888


Q ss_pred             EEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCC---CcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhc
Q 040384          137 SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQL---PGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAA  213 (224)
Q Consensus       137 ~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~---pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~~~  213 (224)
                      .+.|++||+++||+|.+|+++|.+ +.+.++.+|++..   +..+.+.+++ ++   +|++||+++|+++++++++|++.
T Consensus       111 ~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~l-~~---~p~~Vla~~f~l~~~~~~~l~~~  185 (367)
T TIGR03404       111 IDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDWL-AH---TPKDVLAKNFGVPESAFDNLPLK  185 (367)
T ss_pred             EeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHHH-Hh---CCHHHHHHHhCCCHHHHHhcccc
Confidence            889999999999999999999985 5577888887654   4466677764 76   99999999999999999999864

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>smart00835 Cupin_1 Cupin

Probab=99.87  E-value=5.4e-21  Score=153.08  Aligned_cols=135  Identities=37%  Similarity=0.657  Sum_probs=117.5

Q ss_pred             cCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC-CeEEEEEECCCCEEE
Q 040384           69 SNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSKVVTAGMLFL  147 (224)
Q Consensus        69 ~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~~~~~l~~GDv~v  147 (224)
                      .+..||++..++..++|.+++.++.+.+++++||+..++|||+++.|++||++|++++.+.+++ ++.....+++||+++
T Consensus         7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~   86 (146)
T smart00835        7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV   86 (146)
T ss_pred             ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence            3567888999999999999999999999999999999999998889999999999999987653 355679999999999


Q ss_pred             ecCCCeeEEEecCCccEEEEEEeeCCCCcce---ehhhhhhcCCCCCCHHHHHhhcCCCHHHH
Q 040384          148 IPRGLVHFQLNVGKENVLFFPSFNSQLPGTQ---FVHSSLFNTTPPIPNEVLTKTFLVGDEVI  207 (224)
Q Consensus       148 vP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~---~~~~~lf~~~p~~p~evla~af~v~~~~v  207 (224)
                      +|+|..|++.|.++++++++ .+++++|..-   ....++|++   +++++++++|+++++++
T Consensus        87 ip~g~~H~~~n~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  145 (146)
T smart00835       87 VPQGHPHFQVNSGDENLEFV-AFNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEV  145 (146)
T ss_pred             ECCCCEEEEEcCCCCCEEEE-EEecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHc
Confidence            99999999999999999888 4666666542   222467886   99999999999999875

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.78  E-value=2.1e-18  Score=144.50  Aligned_cols=150  Identities=19%  Similarity=0.315  Sum_probs=128.2

Q ss_pred             cCCCeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCc--eEEEEeCeEEEEEEeC
Q 040384           54 TSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSE--SSIVIRGTVLVGIITT  131 (224)
Q Consensus        54 t~~df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~E--i~yVl~G~~~v~~v~~  131 (224)
                      ..+||+|.+.....  ...|+.+.......+|+-     +...+.+.||++...||||++.|  |.||++|+++.-+.++
T Consensus        49 ~~~~~~yel~~~~~--~~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~  121 (209)
T COG2140          49 KEDDFVYELLESEP--GERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKP  121 (209)
T ss_pred             CCCceEEEeecccc--cccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcC
Confidence            67889995433322  223888999999999987     55678999999999999999999  9999999999999999


Q ss_pred             CCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 040384          132 DNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIK  211 (224)
Q Consensus       132 ~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~  211 (224)
                      +|+.....+++||+++||++..|+..|+|+++++++.++....+....+..++++    ++..+++..|+.+....+.++
T Consensus       122 ~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D~p~  197 (209)
T COG2140         122 EGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVDVPR  197 (209)
T ss_pred             CCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccccCcc
Confidence            9999999999999999999999999999999999999998888888888777755    788899999988877777665


Q ss_pred             hcc
Q 040384          212 AAI  214 (224)
Q Consensus       212 ~~~  214 (224)
                      -++
T Consensus       198 ~~~  200 (209)
T COG2140         198 IKF  200 (209)
T ss_pred             ccc
Confidence            443

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.44  E-value=7.7e-13  Score=92.13  Aligned_cols=70  Identities=31%  Similarity=0.461  Sum_probs=63.1

Q ss_pred             EEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           96 RVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        96 rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      +++++||+..++|+|+...|++||++|++++.+   +++  ...+++||.+.+|+|..|...|.+++++.++.++
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            578999999999999876699999999999984   355  7899999999999999999999999999988764

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.35  E-value=9.6e-12  Score=97.49  Aligned_cols=86  Identities=26%  Similarity=0.374  Sum_probs=72.6

Q ss_pred             ccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384           82 HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus        82 ~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      .-++...+..+++.++.++||+..+.|+||...+.+||++|++++++-   ++  .+.+++||++++|+|..||..|.++
T Consensus        33 ~~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~--~~~l~~Gd~i~ip~g~~H~~~a~~~  107 (131)
T COG1917          33 RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE--KKELKAGDVIIIPPGVVHGLKAVED  107 (131)
T ss_pred             eeccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC--ceEecCCCEEEECCCCeeeeccCCC
Confidence            344545566789999999999999999998667999999999999973   33  6899999999999999999999998


Q ss_pred             ccEEEEEEeeC
Q 040384          162 ENVLFFPSFNS  172 (224)
Q Consensus       162 ~~a~~~~~~~s  172 (224)
                      +....++++..
T Consensus       108 ~~~~~l~v~~~  118 (131)
T COG1917         108 EPMVLLLVFPL  118 (131)
T ss_pred             CceeEEEEeee
Confidence            87566666654

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=99.35  E-value=2.9e-11  Score=101.27  Aligned_cols=97  Identities=18%  Similarity=0.260  Sum_probs=80.4

Q ss_pred             EEEeecccCCCCccccEEEEEEEEeCCcc------cCceecCCC--CceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEE
Q 040384           76 VTEGNVHEFPGVNTQGISTNRVDLAVGGI------NPPHLHPRS--SESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFL  147 (224)
Q Consensus        76 ~~~~~~~~~P~l~~~gis~~rv~l~pgg~------~~pH~Hp~a--~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~v  147 (224)
                      +..+.. ..|.++..++.+....+.||..      .++|+|+..  .|+.||++|++.+.+.+.++......+++||+++
T Consensus        53 ~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~  131 (191)
T PRK04190         53 VYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY  131 (191)
T ss_pred             EEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence            444443 3445666689999999999996      667999855  4999999999999887666666678999999999


Q ss_pred             ecCCCeeEEEecCCccEEEEEEeeCC
Q 040384          148 IPRGLVHFQLNVGKENVLFFPSFNSQ  173 (224)
Q Consensus       148 vP~G~~H~~~N~G~~~a~~~~~~~s~  173 (224)
                      ||+|..|...|.|++++++++++...
T Consensus       132 IPpg~~H~~iN~G~epl~fl~v~p~~  157 (191)
T PRK04190        132 VPPYWAHRSVNTGDEPLVFLACYPAD  157 (191)
T ss_pred             ECCCCcEEeEECCCCCEEEEEEEcCC
Confidence            99999999999999999999987643

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=2.9e-11  Score=94.85  Aligned_cols=81  Identities=26%  Similarity=0.231  Sum_probs=71.9

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ...++.++.+.||+-..+|.|.+..|++||++|++.+.+   +++  ...+++||++++|+|..|+..|.|..++.++.+
T Consensus        34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei  108 (127)
T COG0662          34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV  108 (127)
T ss_pred             CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence            478999999999999999889889999999999999987   344  689999999999999999999999999999887


Q ss_pred             eeCCCC
Q 040384          170 FNSQLP  175 (224)
Q Consensus       170 ~~s~~p  175 (224)
                      -.....
T Consensus       109 ~~p~~~  114 (127)
T COG0662         109 QSPPYL  114 (127)
T ss_pred             ecCCcC
Confidence            654443

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.27  E-value=7e-11  Score=92.71  Aligned_cols=82  Identities=18%  Similarity=0.250  Sum_probs=69.4

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .++++.+..++||+..+.|+|.. .|+.||++|++++..++ +++  .+.|++||.+++|++..|++.|.  +++.++++
T Consensus        33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~-~g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v  106 (125)
T PRK13290         33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLA-TGE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCV  106 (125)
T ss_pred             CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcC-CCE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEE
Confidence            46899999999999999999965 69999999999987321 244  68999999999999999999997  78999998


Q ss_pred             eeCCCCcc
Q 040384          170 FNSQLPGT  177 (224)
Q Consensus       170 ~~s~~pg~  177 (224)
                      ++.+.+|.
T Consensus       107 ~tP~~~~~  114 (125)
T PRK13290        107 FNPPLTGR  114 (125)
T ss_pred             ECCCCCCc
Confidence            87555544

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.06  E-value=1.3e-09  Score=87.57  Aligned_cols=84  Identities=17%  Similarity=0.179  Sum_probs=69.2

Q ss_pred             cCCCCccccEEEEEEEEeCCcc-cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCC--CeeEEEec
Q 040384           83 EFPGVNTQGISTNRVDLAVGGI-NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRG--LVHFQLNV  159 (224)
Q Consensus        83 ~~P~l~~~gis~~rv~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G--~~H~~~N~  159 (224)
                      .+-+|+  .+.+....++||+. ...|||....|++||++|++.+.+   ++.  ...|++||++-||+|  ..|.+.|.
T Consensus        35 ~~~Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~--e~~lrpGD~~gFpAG~~~aHhliN~  107 (161)
T COG3837          35 DALGLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGG--ETRLRPGDSAGFPAGVGNAHHLINR  107 (161)
T ss_pred             hhcChh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCe--eEEecCCceeeccCCCcceeEEeec
Confidence            445566  45666778899995 568999999999999999999875   333  589999999999999  89999999


Q ss_pred             CCccEEEEEEeeCC
Q 040384          160 GKENVLFFPSFNSQ  173 (224)
Q Consensus       160 G~~~a~~~~~~~s~  173 (224)
                      ++..++++.+=+..
T Consensus       108 s~~~~~yL~vG~r~  121 (161)
T COG3837         108 SDVILRYLEVGTRE  121 (161)
T ss_pred             CCceEEEEEecccc
Confidence            99988888775543

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.03  E-value=2.4e-09  Score=100.89  Aligned_cols=76  Identities=24%  Similarity=0.291  Sum_probs=69.8

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      ++.+.+++++||+..++|+|+...|.+||++|++++.+   +++  ...|++||.+++|+|..|.+.|.|++++.++.+.
T Consensus       375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~---dg~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~  449 (468)
T TIGR01479       375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI---GDE--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ  449 (468)
T ss_pred             CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence            68899999999999899999888999999999999986   455  6899999999999999999999999999998886


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      .
T Consensus       450 ~  450 (468)
T TIGR01479       450 S  450 (468)
T ss_pred             c
Confidence            5

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.99  E-value=6.2e-09  Score=84.23  Aligned_cols=76  Identities=26%  Similarity=0.321  Sum_probs=69.0

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      +-+..+-++.+.||.....|+|....|..+|++|++.+.+   +++  .+.+++||.+.+|+|..|.+.|.|+.++.++.
T Consensus        60 ~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE  134 (151)
T PF01050_consen   60 GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DDE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIE  134 (151)
T ss_pred             cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CCE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence            3468899999999999999999999999999999999987   454  68999999999999999999999999998886


Q ss_pred             E
Q 040384          169 S  169 (224)
Q Consensus       169 ~  169 (224)
                      +
T Consensus       135 V  135 (151)
T PF01050_consen  135 V  135 (151)
T ss_pred             E
Confidence            5

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.97  E-value=4.4e-09  Score=99.30  Aligned_cols=78  Identities=23%  Similarity=0.260  Sum_probs=69.7

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      +.++.+.+++++||+....|+|....|..||++|++++.+   +++  ...|++||.+.+|+|..|.+.|.|+++++++.
T Consensus       382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i---dg~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~  456 (478)
T PRK15460        382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI---DGD--IKLLGENESIYIPLGATHCLENPGKIPLDLIE  456 (478)
T ss_pred             CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence            3468899999999998877888778899999999999987   455  78999999999999999999999999999988


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      +..
T Consensus       457 V~~  459 (478)
T PRK15460        457 VRS  459 (478)
T ss_pred             EEc
Confidence            764

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.96  E-value=8.8e-09  Score=85.41  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=63.7

Q ss_pred             ccEEEEEEEEeCCcccC-ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           90 QGISTNRVDLAVGGINP-PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ..+.+....++||+... .|+| ...|++||++|++.+.+   +++  .+.|++||.+++|.+..|.+.|.|++++.++.
T Consensus       105 ~~~~~~~~~~~pg~~~~~~~~h-~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~  178 (185)
T PRK09943        105 RTLAMIFETYQPGTTTGERIKH-QGEEIGTVLEGEIVLTI---NGQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS  178 (185)
T ss_pred             CeeEEEEEEccCCCCccccccc-CCcEEEEEEEeEEEEEE---CCE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence            34667778899999654 5677 56899999999999987   344  68999999999999999999999999998887


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      +..
T Consensus       179 ~~~  181 (185)
T PRK09943        179 AHT  181 (185)
T ss_pred             EeC
Confidence            653

>PRK11171 hypothetical protein; Provisional

Probab=98.94  E-value=2.5e-08  Score=87.63  Aligned_cols=78  Identities=17%  Similarity=0.193  Sum_probs=67.8

Q ss_pred             cccEEEEEEEEeCCcccCceecC-CCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHP-RSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      +.++.+.++.+.||+....|+|. ...|++||++|++++.+   +++  +..|++||.+.+|++..|.+.|.|++++.++
T Consensus        58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l  132 (266)
T PRK11171         58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGK--THALSEGGYAYLPPGSDWTLRNAGAEDARFH  132 (266)
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence            45789999999999987777775 45799999999999986   354  6899999999999999999999999999988


Q ss_pred             EEee
Q 040384          168 PSFN  171 (224)
Q Consensus       168 ~~~~  171 (224)
                      .+..
T Consensus       133 ~v~~  136 (266)
T PRK11171        133 WIRK  136 (266)
T ss_pred             EEEc
Confidence            7753

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.87  E-value=1.8e-08  Score=88.24  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             cEEEEEEEEeCCcccCc-eecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           91 GISTNRVDLAVGGINPP-HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ++.+.+++++||+..+. |.|. -.|..||++|++.+.+   +++  ...+++||++.+|++..||.+|.|++++.++..
T Consensus       178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~---~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y  251 (260)
T TIGR03214       178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNL---DNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY  251 (260)
T ss_pred             CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence            67888899999999995 6664 5688899999999875   555  789999999999999999999999999887754


Q ss_pred             e
Q 040384          170 F  170 (224)
Q Consensus       170 ~  170 (224)
                      -
T Consensus       252 k  252 (260)
T TIGR03214       252 K  252 (260)
T ss_pred             c
Confidence            3

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.82  E-value=3.6e-08  Score=76.01  Aligned_cols=84  Identities=24%  Similarity=0.293  Sum_probs=72.5

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ++-+-.++++||+-.--|-|-+-...+||++|+....+.   +++ +....++||+|+||+|..|--.|.+++++..+.+
T Consensus        45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G---~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa  121 (142)
T COG4101          45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG---NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA  121 (142)
T ss_pred             eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec---cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence            677888999999999999998877889999999999873   343 4578899999999999999999999999998888


Q ss_pred             eeCCCCcc
Q 040384          170 FNSQLPGT  177 (224)
Q Consensus       170 ~~s~~pg~  177 (224)
                      -+..++..
T Consensus       122 RsDp~~~E  129 (142)
T COG4101         122 RSDPNPQE  129 (142)
T ss_pred             ccCCCCCc
Confidence            77666554

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.74  E-value=1.5e-07  Score=82.50  Aligned_cols=77  Identities=21%  Similarity=0.165  Sum_probs=65.2

Q ss_pred             ccEEEEEEEEeCCccc-CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           90 QGISTNRVDLAVGGIN-PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ..+....++++||+-. .+|+|+...|++||++|++++.+   +++  ...|++||.+++|+|..|.+.|.+++++.++.
T Consensus        56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~---~g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~  130 (260)
T TIGR03214        56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA---EGE--THELREGGYAYLPPGSKWTLANAQAEDARFFL  130 (260)
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence            3688999999998754 46667666899999999999886   354  67999999999999999999999999999876


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      +-.
T Consensus       131 v~k  133 (260)
T TIGR03214       131 YKK  133 (260)
T ss_pred             EEe
Confidence            653

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=98.71  E-value=3.6e-07  Score=80.27  Aligned_cols=75  Identities=16%  Similarity=0.100  Sum_probs=65.3

Q ss_pred             cEEEEEEEEeCCcccCce-ecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           91 GISTNRVDLAVGGINPPH-LHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH-~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ++.+.+++|+||+..+.| +| ...|.+||++|++++.+   +++  .+.|++||++.+|.+..|++.|.|+++++++..
T Consensus       183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~---~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~  256 (266)
T PRK11171        183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL---NND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY  256 (266)
T ss_pred             CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence            468899999999999884 66 56899999999999986   455  789999999999999999999999999988755


Q ss_pred             ee
Q 040384          170 FN  171 (224)
Q Consensus       170 ~~  171 (224)
                      -+
T Consensus       257 k~  258 (266)
T PRK11171        257 KD  258 (266)
T ss_pred             cc
Confidence            43

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.70  E-value=2.2e-07  Score=77.32  Aligned_cols=86  Identities=20%  Similarity=0.308  Sum_probs=57.9

Q ss_pred             CccccEEEEEEEEeCCcc------cCceecCC------CCceEEEEeCeEEEEEEeCCC----eEEEEEECCCCEEEecC
Q 040384           87 VNTQGISTNRVDLAVGGI------NPPHLHPR------SSESSIVIRGTVLVGIITTDN----VFYSKVVTAGMLFLIPR  150 (224)
Q Consensus        87 l~~~gis~~rv~l~pgg~------~~pH~Hp~------a~Ei~yVl~G~~~v~~v~~~~----~~~~~~l~~GDv~vvP~  150 (224)
                      ++..++......+.||-+      ..-|+|+.      -.|+.+|++|++.+-+-+.++    +.+...+++||+++||+
T Consensus        45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp  124 (182)
T PF06560_consen   45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP  124 (182)
T ss_dssp             -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred             ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence            445568888888888754      35699998      789999999999999988877    77789999999999999


Q ss_pred             CCeeEEEecCCccEEEEEEeeC
Q 040384          151 GLVHFQLNVGKENVLFFPSFNS  172 (224)
Q Consensus       151 G~~H~~~N~G~~~a~~~~~~~s  172 (224)
                      ++.|...|+|++++++.+...+
T Consensus       125 ~yaH~tIN~g~~~L~~~~~~~~  146 (182)
T PF06560_consen  125 GYAHRTINTGDEPLVFAAWVPR  146 (182)
T ss_dssp             T-EEEEEE-SSS-EEEEEEEET
T ss_pred             CceEEEEECCCCcEEEEEEEec
Confidence            9999999999999988877653

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.66  E-value=4e-07  Score=72.86  Aligned_cols=92  Identities=15%  Similarity=0.140  Sum_probs=58.2

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC----CeEEEEEECCCCEEEecCCCeeEEEecC-CccEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD----NVFYSKVVTAGMLFLIPRGLVHFQLNVG-KENVL  165 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----~~~~~~~l~~GDv~vvP~G~~H~~~N~G-~~~a~  165 (224)
                      .+.+-.-++.||.-.|+|-| ...|+++|++|+++..+....    |+.....+-+++.|.||.+..|-..|++ .+++.
T Consensus        43 evEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq  121 (167)
T PF02041_consen   43 EVEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ  121 (167)
T ss_dssp             SEEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred             eeeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence            46888899999999999999 578999999999999887654    5677899999999999999999999999 48888


Q ss_pred             EEEEeeCCCCcceehhhh
Q 040384          166 FFPSFNSQLPGTQFVHSS  183 (224)
Q Consensus       166 ~~~~~~s~~pg~~~~~~~  183 (224)
                      ++++++..--..+...+|
T Consensus       122 vlViiSrpPvkvf~y~dw  139 (167)
T PF02041_consen  122 VLVIISRPPVKVFIYDDW  139 (167)
T ss_dssp             EEEEEESSS--EEEESST
T ss_pred             EEEEecCCCeEEEEeccc
Confidence            887776443334444444

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.48  E-value=9.2e-07  Score=73.04  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             eCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384          100 AVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV  159 (224)
Q Consensus       100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~  159 (224)
                      .||.-...|+|+ ..|++|+++|++++.+++ +|+.....|++||++++|+|..|.....
T Consensus        42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~   99 (177)
T PRK13264         42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQRE   99 (177)
T ss_pred             cCCcccccccCC-CceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccC
Confidence            566667789995 699999999999999987 4555679999999999999999998764

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.48  E-value=1.1e-06  Score=71.51  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             eCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384          100 AVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus       100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      .||.-...|.|+ ..|++|+++|++.+.+.+. |+.....|++||++++|+|..|.....++
T Consensus        36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~   95 (159)
T TIGR03037        36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG   95 (159)
T ss_pred             CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence            344445567775 7999999999999998764 55567999999999999999999876544

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.43  E-value=2.8e-06  Score=62.34  Aligned_cols=72  Identities=33%  Similarity=0.448  Sum_probs=54.4

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .++...++|+||+.-++-.--+..-++||++|.+++.+   +++  +..+.+||+|.||+|-.-.+.|.+++++.++
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti---~~~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf   82 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI---HET--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF   82 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE---cCc--EEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence            56788999999999877444367788999999999998   344  6899999999999999999999999998865

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.34  E-value=2.3e-06  Score=65.04  Aligned_cols=62  Identities=29%  Similarity=0.304  Sum_probs=44.0

Q ss_pred             CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384          101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ++-..++|+|+ .-|+.||++|++++.+   +++  ...+++||++++|+|..|.....++++...+.
T Consensus        12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~---~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~   73 (136)
T PF02311_consen   12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI---DGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYW   73 (136)
T ss_dssp             TT-SEEEETT--SEEEEEEEEE-EEEEE---TTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEE
T ss_pred             CCCccCCEECC-CEEEEEEeCCEEEEEE---CCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEE
Confidence            45567899995 6899999999999876   455  68999999999999999999887765555443

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.30  E-value=7.1e-06  Score=66.83  Aligned_cols=67  Identities=18%  Similarity=0.257  Sum_probs=48.7

Q ss_pred             ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEee
Q 040384          104 INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN  171 (224)
Q Consensus       104 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~  171 (224)
                      ....|.|. ..|+-|+++|++...+.+.+++.....+++||++++|+|+.||+.-..+....++=.|.
T Consensus        84 f~~EH~H~-deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~  150 (157)
T PF03079_consen   84 FFEEHTHE-DEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK  150 (157)
T ss_dssp             HCS-EEES-S-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred             hheeEecC-hheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence            44689995 58999999999999999887776678999999999999999999644344455554554

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=98.29  E-value=2e-06  Score=63.43  Aligned_cols=66  Identities=27%  Similarity=0.387  Sum_probs=51.4

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      |..+..+.++||+..+.|+|+ ..|.+||++|++..    .+     .++.+||.+..|.|..|....  ++.+.++.
T Consensus        23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~~-----~~~~~G~~~~~p~g~~h~~~s--~~gc~~~v   88 (91)
T PF12973_consen   23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----GD-----GRYGAGDWLRLPPGSSHTPRS--DEGCLILV   88 (91)
T ss_dssp             TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----TT-----CEEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred             cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----CC-----ccCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence            678889999999999999995 57889999999763    23     356999999999999999874  45566553

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=98.20  E-value=7e-06  Score=74.35  Aligned_cols=76  Identities=16%  Similarity=0.283  Sum_probs=64.8

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+.+..-.|.||...++|-| .+..+.||++|++....|+  |+  +..+++||+|++|.+..|...|.|+++++.+.++
T Consensus        80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~--g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l  154 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVD--GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL  154 (335)
T ss_pred             hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEEC--CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence            45666778999999999999 5789999999999655554  55  6899999999999999999999999998876666


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      |
T Consensus       155 D  155 (335)
T TIGR02272       155 D  155 (335)
T ss_pred             C
Confidence            5

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=98.19  E-value=3.8e-06  Score=71.71  Aligned_cols=75  Identities=17%  Similarity=0.233  Sum_probs=64.1

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      +..+..+.++||+.++.|.| ...|+.+|++|+..    +.+     ..+.+||++..|.|..|...+.++++++++++.
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f~----de~-----g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~  195 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAFS----DET-----GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL  195 (215)
T ss_pred             CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEEE----cCC-----CccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence            35778899999999999999 56899999999953    322     478999999999999999999988889999998


Q ss_pred             eCCCC
Q 040384          171 NSQLP  175 (224)
Q Consensus       171 ~s~~p  175 (224)
                      +.+.-
T Consensus       196 dapl~  200 (215)
T TIGR02451       196 DAPLR  200 (215)
T ss_pred             cCCcc
Confidence            76543

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=98.15  E-value=9.2e-06  Score=72.34  Aligned_cols=61  Identities=18%  Similarity=0.102  Sum_probs=49.9

Q ss_pred             EEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384           95 NRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus        95 ~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      ....-.|..|.++||| +.-|+.|+++|++.+.+   +|+  ...+++||+++++.|.+|.....++
T Consensus        29 ~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g~--~~~l~~Gd~ili~s~~~H~~~~~~~   89 (302)
T PRK10371         29 EIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NNE--KVQINQGHITLFWACTPHQLTDPGN   89 (302)
T ss_pred             EEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CCE--EEEEcCCcEEEEecCCcccccccCC
Confidence            3345667788999999 56899999999998775   455  6899999999999999998765443

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.15  E-value=1.7e-05  Score=64.80  Aligned_cols=71  Identities=21%  Similarity=0.315  Sum_probs=57.5

Q ss_pred             CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcce
Q 040384          106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQ  178 (224)
Q Consensus       106 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~  178 (224)
                      .-|.| ...|+-|++.|++...+..++|+.+.....+||.+.+|+|.-||+--..+....++=.|. ..+|-+
T Consensus        89 ~EH~H-~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWV  159 (181)
T COG1791          89 QEHLH-TDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWV  159 (181)
T ss_pred             HHhcc-CCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCce
Confidence            46999 568999999999999999999999999999999999999999999644444455555554 444543

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.14  E-value=2.1e-05  Score=67.41  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .|++....++. +.  -+||-+..|+.||++|++++.+   +|+  ++.+++||++++|+|..|.+.+.+  .+.++.+
T Consensus       156 ~m~aGf~~~~~-~s--f~wtl~~dEi~YVLEGe~~l~I---dG~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV  224 (233)
T PRK15457        156 SMAAGFMQWEN-AF--FPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYV  224 (233)
T ss_pred             ceeeEEEEEec-Cc--cceeccceEEEEEEEeEEEEEE---CCE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEEE
Confidence            45555666665 22  3477788999999999999987   465  789999999999999994444443  4444433

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=98.12  E-value=7.8e-06  Score=64.67  Aligned_cols=67  Identities=27%  Similarity=0.373  Sum_probs=53.7

Q ss_pred             CCcccC-ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384          101 VGGINP-PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus       101 pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .|++.. -|||.+++|++.|++|+..+.+..++|+  ...+++||++++|.|.-|.-. ..+.+..++..+
T Consensus        51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~rl-~sS~DF~VvGaY  118 (163)
T COG4297          51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCRL-HSSADFQVVGAY  118 (163)
T ss_pred             cccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCcccccc-cCCCCeEEEccc
Confidence            345444 5999999999999999999999887776  678999999999999999863 344455555544

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=98.02  E-value=4.2e-05  Score=66.62  Aligned_cols=52  Identities=21%  Similarity=0.308  Sum_probs=43.6

Q ss_pred             CcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384          102 GGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV  159 (224)
Q Consensus       102 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~  159 (224)
                      +...++||| +..|++||++|++++.+   +++  ...+++||++++|+|..|.....
T Consensus        33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~--~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NGK--RVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             hcCCCCccc-ccEEEEEEEeceEEEEE---CCE--EEEECCCcEEEeCCCCccceeee
Confidence            335689999 67899999999999876   455  57999999999999999976443

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=97.99  E-value=1.1e-05  Score=70.36  Aligned_cols=73  Identities=32%  Similarity=0.494  Sum_probs=47.3

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      -|.+..|+.+.+|-..|||+| ++++-.||++|.+..+    +.+....-|.+|..+..|+|..|+....+++.+.++
T Consensus        34 ~g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~  106 (251)
T PF14499_consen   34 DGPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI  106 (251)
T ss_dssp             TS-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred             CCcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence            388999999999999999999 6899999999987654    334445679999999999999999876666555443

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=97.97  E-value=0.00012  Score=57.09  Aligned_cols=84  Identities=17%  Similarity=0.235  Sum_probs=72.7

Q ss_pred             ccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           88 NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        88 ~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .++|+|+-.-.+.+|.-...||- +.-|-+|+++|++++.-.+ +|+  .+.+++|.+.+..+--.|+.....  ++.++
T Consensus        31 DgmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~v  104 (126)
T PF06339_consen   31 DGMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLV  104 (126)
T ss_pred             CCCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEecC--CEEEE
Confidence            46799999999999999999998 6789999999999998765 455  689999999999999999997543  89999


Q ss_pred             EEeeCCCCcc
Q 040384          168 PSFNSQLPGT  177 (224)
Q Consensus       168 ~~~~s~~pg~  177 (224)
                      ++||.+--|.
T Consensus       105 CVFnPpltG~  114 (126)
T PF06339_consen  105 CVFNPPLTGR  114 (126)
T ss_pred             EEcCCCCcCc
Confidence            9998765444

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.93  E-value=1.8e-05  Score=70.08  Aligned_cols=115  Identities=19%  Similarity=0.278  Sum_probs=85.3

Q ss_pred             CccCCCeee-ecc----CCCcccCCCCceEEEeecccCCCCcccc-----EEEEEEEEeCCcccCceecCCCCceEEEEe
Q 040384           52 EVTSDDFFF-DLS----EEGNLSNAFGRAVTEGNVHEFPGVNTQG-----ISTNRVDLAVGGINPPHLHPRSSESSIVIR  121 (224)
Q Consensus        52 ~vt~~df~f-~l~----~~~~~~~~~g~~~~~~~~~~~P~l~~~g-----is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~  121 (224)
                      ...+.-+.| .++    ..+......++ ++.+-....|+|++..     +-+..--|.||-+.|.|-| +.+.+-+|++
T Consensus        43 ~~vp~lW~~~~ir~ll~~sgeli~~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrH-sqsAlRFvve  120 (351)
T COG3435          43 DCVPALWKYEEIRPLLLRSGELISAREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRH-NQSALRFVVE  120 (351)
T ss_pred             ccccccccHHHHHHHHHHhhhccCcccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccc-cccceEEEEe
Confidence            334445556 322    23443333333 6677778889888763     1233456789999999999 4578999999


Q ss_pred             CeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeC
Q 040384          122 GTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNS  172 (224)
Q Consensus       122 G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s  172 (224)
                      |++-..+|+  |.  ...+++||+++.|++..|..-|.|++|++++-.++.
T Consensus       121 G~Ga~T~Vd--Ge--r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi  167 (351)
T COG3435         121 GKGAYTVVD--GE--RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI  167 (351)
T ss_pred             ccceeEeec--Cc--eeeccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence            999888886  43  579999999999999999999999999999876653

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.93  E-value=0.00025  Score=56.01  Aligned_cols=93  Identities=14%  Similarity=0.057  Sum_probs=53.1

Q ss_pred             CCceEEEeecccCCCCccccEEEEEEE-EeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCC-CEEEec
Q 040384           72 FGRAVTEGNVHEFPGVNTQGISTNRVD-LAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAG-MLFLIP  149 (224)
Q Consensus        72 ~g~~~~~~~~~~~P~l~~~gis~~rv~-l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~G-Dv~vvP  149 (224)
                      ..|.++.+...+...+.  --.+..+. .++|..+..|+|...+|+++|++|+.++.+-+.. +.....|..- +.+.+|
T Consensus        14 ~RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~-~~~~~~L~~~~~~L~Ip   90 (131)
T PF05523_consen   14 ERGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR-EEEEFILDEPNKGLYIP   90 (131)
T ss_dssp             TTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS--EEEEEE--TTEEEEE-
T ss_pred             CCCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCC-CcEEEEECCCCeEEEEC
Confidence            35667777766433333  12444443 3445458999999999999999999999875533 3356777555 589999


Q ss_pred             CCCeeEEEecCCccEEEEE
Q 040384          150 RGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       150 ~G~~H~~~N~G~~~a~~~~  168 (224)
                      +|.+|.+.|.+++ +++++
T Consensus        91 pg~w~~~~~~s~~-svlLv  108 (131)
T PF05523_consen   91 PGVWHGIKNFSED-SVLLV  108 (131)
T ss_dssp             TT-EEEEE---TT--EEEE
T ss_pred             CchhhHhhccCCC-cEEEE
Confidence            9999999999876 66554

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PRK13501 transcriptional activator RhaR; Provisional

Probab=97.92  E-value=3.7e-05  Score=67.57  Aligned_cols=55  Identities=25%  Similarity=0.204  Sum_probs=45.7

Q ss_pred             CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384          101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus       101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      +..-.++||| +..|++||++|++++.+   +++  ...+++||++++|+|..|.+...++
T Consensus        27 ~~~~~~~H~H-~~~ei~~i~~G~~~~~i---~~~--~~~l~~g~~~~I~p~~~H~~~~~~~   81 (290)
T PRK13501         27 PQETFVEHTH-QFCEIVIVWRGNGLHVL---NDH--PYRITCGDVFYIQAADHHSYESVHD   81 (290)
T ss_pred             CCCCCccccc-cceeEEEEecCceEEEE---CCe--eeeecCCeEEEEcCCCcccccccCC
Confidence            3344679999 57899999999999886   454  6899999999999999999875443

>PRK13500 transcriptional activator RhaR; Provisional

Probab=97.89  E-value=5.2e-05  Score=67.67  Aligned_cols=55  Identities=27%  Similarity=0.253  Sum_probs=45.6

Q ss_pred             CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384          101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus       101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      |....++||| +..|++||++|++...+   +++  ...+++||+++||+|..|......+
T Consensus        57 ~~~~~~~H~H-~~~el~~v~~G~g~~~v---~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~  111 (312)
T PRK13500         57 PQDVFAEHTH-DFCELVIVWRGNGLHVL---NDR--PYRITRGDLFYIHADDKHSYASVND  111 (312)
T ss_pred             CCCCCCcccc-ceEEEEEEEcCeEEEEE---CCE--EEeecCCeEEEECCCCeecccccCC
Confidence            3344689999 57899999999999876   454  6899999999999999999875443

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=97.81  E-value=6.3e-05  Score=65.57  Aligned_cols=57  Identities=21%  Similarity=0.275  Sum_probs=46.3

Q ss_pred             CcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 040384          102 GGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN  163 (224)
Q Consensus       102 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~  163 (224)
                      +...++|||.+.-|++|+++|++.+.+   +++  ...+++||++++|+|..|.+...++..
T Consensus        33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~   89 (287)
T TIGR02297        33 GRNMPVHFHDRYYQLHYLTEGSIALQL---DEH--EYSEYAPCFFLTPPSVPHGFVTDLDAD   89 (287)
T ss_pred             CCCCCCcccccceeEEEEeeCceEEEE---CCE--EEEecCCeEEEeCCCCccccccCCCcc
Confidence            345789999546799999999998776   454  689999999999999999987654433

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.78  E-value=0.00012  Score=52.14  Aligned_cols=59  Identities=22%  Similarity=0.254  Sum_probs=44.3

Q ss_pred             EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384           92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL  157 (224)
Q Consensus        92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~  157 (224)
                      +++......||.. ..++.  ..|++||++|++++..  .+|+  +.++++||++++|+|..-.+.
T Consensus         7 ~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~--~~G~--~~~~~aGD~~~~p~G~~~~w~   65 (74)
T PF05899_consen    7 FSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITD--EDGE--TVTFKAGDAFFLPKGWTGTWE   65 (74)
T ss_dssp             EEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEE--TTTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred             EEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEE--CCCC--EEEEcCCcEEEECCCCEEEEE
Confidence            4666677788653 34444  4899999999998874  4565  699999999999999876654

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.76  E-value=6.4e-05  Score=65.15  Aligned_cols=54  Identities=19%  Similarity=0.185  Sum_probs=44.8

Q ss_pred             CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384          101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus       101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      +....++||| +..|++||++|++++.+   +++  ...+++||++++|+|..|.+....
T Consensus        24 ~~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~--~~~l~~g~~~~i~~~~~h~~~~~~   77 (278)
T PRK13503         24 PQAAFPEHHH-DFHEIVIVEHGTGIHVF---NGQ--PYTLSGGTVCFVRDHDRHLYEHTD   77 (278)
T ss_pred             cccccccccc-CceeEEEEecCceeeEe---cCC--cccccCCcEEEECCCccchhhhcc
Confidence            4455789999 67899999999999887   344  689999999999999999876543

>PRK13502 transcriptional activator RhaR; Provisional

Probab=97.72  E-value=0.00011  Score=63.98  Aligned_cols=55  Identities=25%  Similarity=0.235  Sum_probs=45.1

Q ss_pred             CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384          101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus       101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      |+-..++||| +.-|++||.+|++++.+   +++  ...+++||++++|+|.+|.+...++
T Consensus        27 ~~~~~~~H~h-~~~~l~~v~~G~~~~~i---~~~--~~~l~~g~l~li~~~~~H~~~~~~~   81 (282)
T PRK13502         27 PQDVFAEHTH-EFCELVMVWRGNGLHVL---NER--PYRITRGDLFYIRAEDKHSYTSVND   81 (282)
T ss_pred             CCCCCCcccc-ceEEEEEEecCcEEEEE---CCE--EEeecCCcEEEECCCCcccccccCC
Confidence            3344689999 57899999999999876   454  6899999999999999999865443

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.49  E-value=0.00021  Score=58.20  Aligned_cols=54  Identities=24%  Similarity=0.391  Sum_probs=48.5

Q ss_pred             ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384          104 INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN  158 (224)
Q Consensus       104 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N  158 (224)
                      ....|.|++ .||-||++|++..-+-+.+++....-+++||++++|+|.-|.+--
T Consensus        85 FfEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTt  138 (179)
T KOG2107|consen   85 FFEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTT  138 (179)
T ss_pred             HHHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeec
Confidence            457899976 799999999999999888888888899999999999999999853

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.42  E-value=0.00069  Score=61.50  Aligned_cols=88  Identities=15%  Similarity=0.018  Sum_probs=64.1

Q ss_pred             CCceEEEeecccCCC-CccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC
Q 040384           72 FGRAVTEGNVHEFPG-VNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR  150 (224)
Q Consensus        72 ~g~~~~~~~~~~~P~-l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~  150 (224)
                      .|..+..+|..+-+. ..+++..  ...+++|....+|-| ..+.++||++|++++.+   +++  +...++||+|++|.
T Consensus       231 ~g~~l~y~NP~TG~~~~pti~~~--~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i---g~~--~~~W~~gD~f~vPs  302 (335)
T TIGR02272       231 HGLKLRYVNPATGGYPMPTIGAF--IQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI---GDA--VFRFSPKDVFVVPS  302 (335)
T ss_pred             ceEEEEEeCCCCCCCcchhHHHH--HhccCCCCCCCCccc-cccEEEEEEeCeEEEEE---CCE--EEEecCCCEEEECC
Confidence            344566677655553 4545444  356788889999999 45799999999999987   344  68999999999999


Q ss_pred             CCeeEEEecCCccEEEEEE
Q 040384          151 GLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       151 G~~H~~~N~G~~~a~~~~~  169 (224)
                      ...|...|.  +++.++.+
T Consensus       303 W~~~~h~a~--~da~Lf~~  319 (335)
T TIGR02272       303 WHPVRFEAS--DDAVLFSF  319 (335)
T ss_pred             CCcEecccC--CCeEEEEe
Confidence            988776664  34554433

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=97.41  E-value=0.0006  Score=55.23  Aligned_cols=58  Identities=21%  Similarity=0.256  Sum_probs=41.6

Q ss_pred             EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384           92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL  157 (224)
Q Consensus        92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~  157 (224)
                      +++....++..   +.-|.-...|+.||++|++.+..   +|+  +...++||+++||+|.--.+.
T Consensus        77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~--~~~A~~GDvi~iPkGs~I~fs  134 (152)
T PF06249_consen   77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQ--TVTAKPGDVIFIPKGSTITFS  134 (152)
T ss_dssp             SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEE
T ss_pred             eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCE--EEEEcCCcEEEECCCCEEEEe
Confidence            45555566653   45688888999999999998873   466  689999999999999876554

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=97.41  E-value=0.0017  Score=53.74  Aligned_cols=70  Identities=17%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             EEEEEEEEeCCcccCceecCCC-CceEEEEeCeEEEEEEeCC------CeEEEEEECCC--CEEEecCCCeeEEEecCCc
Q 040384           92 ISTNRVDLAVGGINPPHLHPRS-SESSIVIRGTVLVGIITTD------NVFYSKVVTAG--MLFLIPRGLVHFQLNVGKE  162 (224)
Q Consensus        92 is~~rv~l~pgg~~~pH~Hp~a-~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~G--Dv~vvP~G~~H~~~N~G~~  162 (224)
                      +|.++    +|-++..|||..- .+++.|++|++..-.+|-.      ++.....+.+-  ..+.||+|++|-.+|.+++
T Consensus        49 ~S~S~----~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~  124 (173)
T COG1898          49 HSFSY----PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDD  124 (173)
T ss_pred             EEEec----CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCc
Confidence            55554    8889999999887 8999999999999888743      35566677654  8999999999999999987


Q ss_pred             cEE
Q 040384          163 NVL  165 (224)
Q Consensus       163 ~a~  165 (224)
                      ..+
T Consensus       125 ~~~  127 (173)
T COG1898         125 AEV  127 (173)
T ss_pred             eEE
Confidence            633

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=97.39  E-value=0.0013  Score=56.00  Aligned_cols=73  Identities=19%  Similarity=0.200  Sum_probs=61.1

Q ss_pred             EEEEEEEEeCCc-ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           92 ISTNRVDLAVGG-INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        92 is~~rv~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ++-..+++.|+| .-.|-.-+++..++||++|++.+.+   +|+  +..|++|+..++|+|..|...|...+++.+.-+
T Consensus        61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~---~G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~  134 (264)
T COG3257          61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA---EGK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWI  134 (264)
T ss_pred             hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE---cCe--EEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence            344567887776 6678777889999999999999887   455  789999999999999999999999888876544

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.26  E-value=0.0043  Score=49.93  Aligned_cols=63  Identities=16%  Similarity=0.257  Sum_probs=42.5

Q ss_pred             EEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384           98 DLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKE  162 (224)
Q Consensus        98 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~  162 (224)
                      .=.|+.-.--|+.+ ..|++|-++|...+.+++ +|+.....+++||+|..|++..|.-.-..++
T Consensus        39 VGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~t  101 (151)
T PF06052_consen   39 VGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPADT  101 (151)
T ss_dssp             EESSB--SSEEE-S-S-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-TT-
T ss_pred             EcCCCCCCccccCC-cceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCCCc
Confidence            33455555568874 689999999999999988 5777789999999999999999997665443

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=97.10  E-value=0.004  Score=51.64  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=55.4

Q ss_pred             eCCcccCceecCCC---CceEEEEeCeEEEEEEeCC------CeEEEEEECCCC--EEEecCCCeeEEEecCCccEEEEE
Q 040384          100 AVGGINPPHLHPRS---SESSIVIRGTVLVGIITTD------NVFYSKVVTAGM--LFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       100 ~pgg~~~pH~Hp~a---~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~GD--v~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .+|-++.+|+|..-   ..++.|++|++..-++|-.      |+.....|.+++  .++||+|..|-....+++..+.+-
T Consensus        51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~  130 (176)
T PF00908_consen   51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK  130 (176)
T ss_dssp             ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred             cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence            45888999999764   5899999999999898832      677888887765  799999999999999776333333


Q ss_pred             EeeCCCCcc
Q 040384          169 SFNSQLPGT  177 (224)
Q Consensus       169 ~~~s~~pg~  177 (224)
                      .-+.-+|+.
T Consensus       131 ~t~~y~p~~  139 (176)
T PF00908_consen  131 VTNYYDPED  139 (176)
T ss_dssp             ESS---GGG
T ss_pred             cCCccCccc
Confidence            322334544

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=96.98  E-value=0.0067  Score=50.33  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=55.3

Q ss_pred             eCCcccCceecC--CCCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEEEE
Q 040384          100 AVGGINPPHLHP--RSSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       100 ~pgg~~~pH~Hp--~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .+|.++.+|+|.  .-..+++|++|++..-++|-.      |+.....|.+  +..+.||+|..|-....+++ +.++-.
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~  130 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK  130 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence            568889999983  357999999999999898853      5777778876  66999999999999998865 444333

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=96.85  E-value=0.0083  Score=46.49  Aligned_cols=61  Identities=20%  Similarity=0.211  Sum_probs=45.6

Q ss_pred             EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384           92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV  159 (224)
Q Consensus        92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~  159 (224)
                      +......-.||..   +++-...|+.|+++|++++.  .++|+  ...+++||++++|+|..--+.-.
T Consensus        45 ~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T--~d~Ge--~v~~~aGD~~~~~~G~~g~W~V~  105 (116)
T COG3450          45 VETGIWECTPGKF---RVTYDEDEFCHILEGRVEVT--PDGGE--PVEVRAGDSFVFPAGFKGTWEVL  105 (116)
T ss_pred             eeEeEEEecCccc---eEEcccceEEEEEeeEEEEE--CCCCe--EEEEcCCCEEEECCCCeEEEEEe
Confidence            4455566666654   45556689999999998875  33455  78999999999999998776543

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=96.83  E-value=0.026  Score=46.61  Aligned_cols=83  Identities=13%  Similarity=0.083  Sum_probs=56.8

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe--------EEEEEECCCCEEEecCCCeeEEEecC-C
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV--------FYSKVVTAGMLFLIPRGLVHFQLNVG-K  161 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~--------~~~~~l~~GDv~vvP~G~~H~~~N~G-~  161 (224)
                      .+.+..+...||...+.|=|.++.-++.|++|+++-......+.        .....+..|...+++.+.+|.+.|.+ +
T Consensus        74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~  153 (175)
T PF05995_consen   74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD  153 (175)
T ss_dssp             T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred             CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence            56778899999999999999777889999999988776543221        12345788888899999999999886 7


Q ss_pred             ccEEEEEEeeCC
Q 040384          162 ENVLFFPSFNSQ  173 (224)
Q Consensus       162 ~~a~~~~~~~s~  173 (224)
                      ++++-+=++..+
T Consensus       154 ~~avSLHvYspP  165 (175)
T PF05995_consen  154 EPAVSLHVYSPP  165 (175)
T ss_dssp             S-EEEEEEEES-
T ss_pred             CCEEEEEEcCCC
Confidence            777766555543

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=96.65  E-value=0.013  Score=47.37  Aligned_cols=63  Identities=19%  Similarity=0.251  Sum_probs=45.4

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      .+++....+++ ...  -|-.+-+|+-||++|++.+..   +|+  +..-++||++++|+|.---+--.|.
T Consensus        99 ~l~aG~m~~~~-~tf--~wtl~yDe~d~VlEGrL~V~~---~g~--tv~a~aGDvifiPKgssIefst~ge  161 (176)
T COG4766          99 RLGAGLMEMKN-TTF--PWTLNYDEIDYVLEGRLHVRI---DGR--TVIAGAGDVIFIPKGSSIEFSTTGE  161 (176)
T ss_pred             ccccceeeecc-ccC--cceecccceeEEEeeeEEEEE---cCC--eEecCCCcEEEecCCCeEEEeccce
Confidence            34555566666 333  355578899999999999876   344  5688999999999998766544443

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=96.51  E-value=0.016  Score=48.98  Aligned_cols=67  Identities=25%  Similarity=0.373  Sum_probs=48.1

Q ss_pred             EEEEEEEeC-CcccCceecCCCCceEEEEeCeEEEEEEeCCC-----------------------------------eEE
Q 040384           93 STNRVDLAV-GGINPPHLHPRSSESSIVIRGTVLVGIITTDN-----------------------------------VFY  136 (224)
Q Consensus        93 s~~rv~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-----------------------------------~~~  136 (224)
                      ....+-+.+ |...+.|+.+ ..-++.+++|+=++.+..+..                                   +.+
T Consensus       131 ~~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~  209 (251)
T PF13621_consen  131 QSSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPY  209 (251)
T ss_dssp             CEEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EE
T ss_pred             cccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCcee
Confidence            344566766 5577889986 568889999999998887641                                   124


Q ss_pred             EEEECCCCEEEecCCCeeEEEecC
Q 040384          137 SKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus       137 ~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      ..+|++||+++||+|..|.+.|..
T Consensus       210 ~~~l~pGD~LfiP~gWwH~V~~~~  233 (251)
T PF13621_consen  210 EVVLEPGDVLFIPPGWWHQVENLS  233 (251)
T ss_dssp             EEEEETT-EEEE-TT-EEEEEEST
T ss_pred             EEEECCCeEEEECCCCeEEEEEcC
Confidence            689999999999999999999983

...

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=96.36  E-value=0.049  Score=50.99  Aligned_cols=87  Identities=15%  Similarity=0.109  Sum_probs=49.9

Q ss_pred             EeecccCCCCccccEEEEEEEEeCCcc-cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEE
Q 040384           78 EGNVHEFPGVNTQGISTNRVDLAVGGI-NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQ  156 (224)
Q Consensus        78 ~~~~~~~P~l~~~gis~~rv~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~  156 (224)
                      .+....-|..+. |+++...... ..| ...-++-+++|++++.+|++++.-  +-|+   ..+++||++|||+|+.+.+
T Consensus       112 ti~g~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~T--e~G~---L~v~pGd~~VIPRG~~~rv  184 (424)
T PF04209_consen  112 TIAGAGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLET--EFGR---LDVRPGDYVVIPRGTRFRV  184 (424)
T ss_dssp             EEEEECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEE--TTEE---EEE-TTEEEEE-TT--EEE
T ss_pred             ccccCccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEe--cCee---EEEcCCeEEEECCeeEEEE
Confidence            344445555543 5554433333 233 344556789999999999998763  3354   6799999999999999998


Q ss_pred             EecCCccEEEEEEee
Q 040384          157 LNVGKENVLFFPSFN  171 (224)
Q Consensus       157 ~N~G~~~a~~~~~~~  171 (224)
                      .=.|.....++..+.
T Consensus       185 ~l~~p~rgyi~E~~~  199 (424)
T PF04209_consen  185 ELPGPARGYIIENFG  199 (424)
T ss_dssp             E-SSSEEEEEEEEES
T ss_pred             EeCCCceEEEEEcCC
Confidence            655443344444444

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.34  E-value=0.014  Score=52.19  Aligned_cols=90  Identities=21%  Similarity=0.101  Sum_probs=63.7

Q ss_pred             CCCceEEEeecccCCC-CccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEec
Q 040384           71 AFGRAVTEGNVHEFPG-VNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIP  149 (224)
Q Consensus        71 ~~g~~~~~~~~~~~P~-l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP  149 (224)
                      -.|..+..+|..+=-- ..  -|.+..--|.||-...+|-|.+ +.+.-|.+|++++.+   +|+  ++...+||+|++|
T Consensus       241 ~dG~~~ryvNP~TGg~~mp--tI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~I---g~~--rf~~~~~D~fvVP  312 (351)
T COG3435         241 FDGYKMRYVNPVTGGYAMP--TIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTII---GGE--RFDWSAGDIFVVP  312 (351)
T ss_pred             CCcceEEEecCCCCCCcCc--hHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEE---CCE--EeeccCCCEEEcc
Confidence            4566666666432111 11  1333344578888889999965 578889999999887   455  6899999999999


Q ss_pred             CCCeeEEEecCCccEEEEEE
Q 040384          150 RGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       150 ~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .=..|...|. ++++.++++
T Consensus       313 sW~~~~~~~g-s~da~LFsf  331 (351)
T COG3435         313 SWAWHEHVNG-SEDAVLFSF  331 (351)
T ss_pred             CcceeecccC-CcceEEEec
Confidence            9888888765 667776654

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=95.36  E-value=0.07  Score=39.67  Aligned_cols=71  Identities=27%  Similarity=0.260  Sum_probs=35.7

Q ss_pred             EEEeCCcccCceecCCCC--ceEEEE--eCeEEEEEEeCCC------------------eEEEEEECCCCEEEecCCCee
Q 040384           97 VDLAVGGINPPHLHPRSS--ESSIVI--RGTVLVGIITTDN------------------VFYSKVVTAGMLFLIPRGLVH  154 (224)
Q Consensus        97 v~l~pgg~~~pH~Hp~a~--Ei~yVl--~G~~~v~~v~~~~------------------~~~~~~l~~GDv~vvP~G~~H  154 (224)
                      ...++|+...+|.|+++.  -+.||-  ++...+.+.+++.                  .......++||+++||.-+.|
T Consensus         5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H   84 (101)
T PF13759_consen    5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH   84 (101)
T ss_dssp             EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred             EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence            356789999999998752  333443  2333445554421                  234568899999999999999


Q ss_pred             EEE-ecCCccEEEE
Q 040384          155 FQL-NVGKENVLFF  167 (224)
Q Consensus       155 ~~~-N~G~~~a~~~  167 (224)
                      ... |.++++-+-+
T Consensus        85 ~v~p~~~~~~Risi   98 (101)
T PF13759_consen   85 GVPPNNSDEERISI   98 (101)
T ss_dssp             EE----SSS-EEEE
T ss_pred             eccCcCCCCCEEEE
Confidence            985 4455443333

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=95.19  E-value=0.085  Score=40.25  Aligned_cols=62  Identities=21%  Similarity=0.206  Sum_probs=45.0

Q ss_pred             CcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC--CCeeEEEecCC-ccEEEE
Q 040384          102 GGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR--GLVHFQLNVGK-ENVLFF  167 (224)
Q Consensus       102 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~--G~~H~~~N~G~-~~a~~~  167 (224)
                      +.-.++|-|.+-.-+.||++|+++-.  |+.|.  ..+|++||+-++-+  |+.|...|.++ +++..+
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l  103 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL  103 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred             CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence            45568999976666679999998654  66565  57899999988865  67999999887 555543

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF12852 Cupin_6: Cupin

Probab=95.11  E-value=0.088  Score=43.19  Aligned_cols=44  Identities=23%  Similarity=0.364  Sum_probs=34.8

Q ss_pred             CceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384          114 SESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus       114 ~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      .-+.+|++|++++.+-+ .+  ....|++||++++|+|..|......
T Consensus        36 ~~fh~V~~G~~~l~~~~-~~--~~~~L~~GDivllp~g~~H~l~~~~   79 (186)
T PF12852_consen   36 ASFHVVLRGSCWLRVPG-GG--EPIRLEAGDIVLLPRGTAHVLSSDP   79 (186)
T ss_pred             eEEEEEECCeEEEEEcC-CC--CeEEecCCCEEEEcCCCCeEeCCCC
Confidence            45678999999998522 12  3689999999999999999995443

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=95.00  E-value=0.22  Score=46.67  Aligned_cols=62  Identities=13%  Similarity=0.139  Sum_probs=45.8

Q ss_pred             cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEee
Q 040384          105 NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN  171 (224)
Q Consensus       105 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~  171 (224)
                      ...-++-++++++++.+|++.+.-.  -|+   ..+++||++|||+|+.+.+.=.|.....++..+.
T Consensus       140 ~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g  201 (429)
T TIGR01015       140 NRAFYNADGDFLIVPQQGALLITTE--FGR---LLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG  201 (429)
T ss_pred             cceeeccCCCEEEEEEeCcEEEEEe--ccc---eEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence            4445666899999999999988742  254   7899999999999999888654543344444444

Missing in human disease alkaptonuria.

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=94.84  E-value=0.25  Score=46.39  Aligned_cols=57  Identities=14%  Similarity=0.099  Sum_probs=42.7

Q ss_pred             cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384          105 NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus       105 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      ...-++-+++|++++.+|++++.-.  -|+   ..+++||++|||+|+.+.+. ..+++++.+
T Consensus       146 ~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~-l~~gp~rgy  202 (438)
T PRK05341        146 DRYFYNADGELLIVPQQGRLRLATE--LGV---LDVEPGEIAVIPRGVKFRVE-LPDGPARGY  202 (438)
T ss_pred             cceeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEEcCccEEEEe-cCCCCeeEE
Confidence            4445667899999999999987742  254   68999999999999998875 323344443

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=94.67  E-value=0.24  Score=44.54  Aligned_cols=67  Identities=16%  Similarity=0.193  Sum_probs=41.2

Q ss_pred             EEEEEEEeCCc--ccCceecCCCCceEEEEeCeEEEEEEeCC------------------CeEEEEEECCCCEEEecCCC
Q 040384           93 STNRVDLAVGG--INPPHLHPRSSESSIVIRGTVLVGIITTD------------------NVFYSKVVTAGMLFLIPRGL  152 (224)
Q Consensus        93 s~~rv~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~------------------~~~~~~~l~~GDv~vvP~G~  152 (224)
                      ..+.+.+.|+|  -..|||=. ..-+++=++|+=+-.+-.+.                  ......+|++||++++|+|+
T Consensus       114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~  192 (319)
T PF08007_consen  114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW  192 (319)
T ss_dssp             EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred             cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence            44556788888  78899873 33444456676454444421                  01346899999999999999


Q ss_pred             eeEEEecC
Q 040384          153 VHFQLNVG  160 (224)
Q Consensus       153 ~H~~~N~G  160 (224)
                      +|.....+
T Consensus       193 ~H~~~~~~  200 (319)
T PF08007_consen  193 WHQAVTTD  200 (319)
T ss_dssp             EEEEEESS
T ss_pred             cCCCCCCC
Confidence            99999887

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>TIGR02466 conserved hypothetical protein

Probab=94.53  E-value=0.14  Score=43.35  Aligned_cols=75  Identities=28%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             EEEEeCCcccCceecCCC--CceEEEE--eCeEEEEEEeCCC------------------eEEEEEECCCCEEEecCCCe
Q 040384           96 RVDLAVGGINPPHLHPRS--SESSIVI--RGTVLVGIITTDN------------------VFYSKVVTAGMLFLIPRGLV  153 (224)
Q Consensus        96 rv~l~pgg~~~pH~Hp~a--~Ei~yVl--~G~~~v~~v~~~~------------------~~~~~~l~~GDv~vvP~G~~  153 (224)
                      ...+.+||....|.||++  +-+.||-  .|.+...+.++..                  ......-++||+++||.-+.
T Consensus       100 ~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~  179 (201)
T TIGR02466       100 VNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLR  179 (201)
T ss_pred             EEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCc
Confidence            346688999999999986  3344555  2333333333220                  01123448999999999999


Q ss_pred             eEEE-ecCCccEEEEEEee
Q 040384          154 HFQL-NVGKENVLFFPSFN  171 (224)
Q Consensus       154 H~~~-N~G~~~a~~~~~~~  171 (224)
                      |... |.++++- +-.+||
T Consensus       180 H~v~p~~~~~~R-ISiSFN  197 (201)
T TIGR02466       180 HEVPPNESEEER-ISVSFN  197 (201)
T ss_pred             eecCCCCCCCCE-EEEEEe
Confidence            9975 5554443 333443

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length

Probab=94.40  E-value=0.4  Score=41.16  Aligned_cols=67  Identities=19%  Similarity=0.361  Sum_probs=42.4

Q ss_pred             EEEEeCCcccCceecCCCCceEEEEe-CeEEEEEEeCC--C--------------eEE------EEEECCCCEEEecCCC
Q 040384           96 RVDLAVGGINPPHLHPRSSESSIVIR-GTVLVGIITTD--N--------------VFY------SKVVTAGMLFLIPRGL  152 (224)
Q Consensus        96 rv~l~pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~--~--------------~~~------~~~l~~GDv~vvP~G~  152 (224)
                      .+.+.+|.+.|.|+|..-.|=++.-- |.+.+.+...+  +              ...      ..+|++|+.+-+++|.
T Consensus        91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~  170 (225)
T PF07385_consen   91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI  170 (225)
T ss_dssp             EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred             heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence            35678899999999998878776665 57777766542  1              111      3689999999999999


Q ss_pred             eeEEEecCCc
Q 040384          153 VHFQLNVGKE  162 (224)
Q Consensus       153 ~H~~~N~G~~  162 (224)
                      .|++.-.+..
T Consensus       171 yH~Fw~e~g~  180 (225)
T PF07385_consen  171 YHWFWGEGGD  180 (225)
T ss_dssp             EEEEEE-TTS
T ss_pred             eeeEEecCCC
Confidence            9999865443

The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.

>PLN02658 homogentisate 1,2-dioxygenase

Probab=94.34  E-value=0.37  Score=45.19  Aligned_cols=59  Identities=15%  Similarity=0.142  Sum_probs=42.9

Q ss_pred             ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe-cCCccEEEEEEe
Q 040384          107 PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN-VGKENVLFFPSF  170 (224)
Q Consensus       107 pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N-~G~~~a~~~~~~  170 (224)
                      .-++-++++++++.+|++.+.-.  -|+   ..+++||++|||+|+.+.+.= .|.....++..+
T Consensus       141 ~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~  200 (435)
T PLN02658        141 AFCNADGDFLIVPQQGRLWIKTE--LGK---LQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF  200 (435)
T ss_pred             eeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence            35677899999999999987742  254   688999999999999988752 333333334444

>COG1741 Pirin-related protein [General function prediction only]

Probab=94.10  E-value=0.14  Score=45.34  Aligned_cols=60  Identities=25%  Similarity=0.303  Sum_probs=49.0

Q ss_pred             EEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC--CCeeEEEec
Q 040384           96 RVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR--GLVHFQLNV  159 (224)
Q Consensus        96 rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~--G~~H~~~N~  159 (224)
                      ...+.||.-.+||-|.+-.-+.||++|+++-.  |+.|+  ...+++||+-..-+  |..|.-+|.
T Consensus        48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~  109 (276)
T COG1741          48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNP  109 (276)
T ss_pred             cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCC
Confidence            45689999999999977666779999998765  55454  58999999998876  678998886

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=94.01  E-value=0.21  Score=43.62  Aligned_cols=44  Identities=23%  Similarity=0.255  Sum_probs=35.5

Q ss_pred             CCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384          112 RSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus       112 ~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      ++-++.++++|++.+..   +++  ...+++||++++|+|.+|......
T Consensus        48 ~~~~i~~~~~G~~~~~~---~~~--~~~~~~g~~i~i~p~~~h~~~~~~   91 (290)
T PRK10572         48 KGYILNLTIRGQGVIFN---GGR--AFVCRPGDLLLFPPGEIHHYGRHP   91 (290)
T ss_pred             cceEEEEEEeccEEEec---CCe--eEecCCCCEEEECCCCceeeccCC
Confidence            34578899999998754   344  689999999999999999875543

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=93.95  E-value=0.57  Score=38.05  Aligned_cols=70  Identities=14%  Similarity=0.199  Sum_probs=41.9

Q ss_pred             EEEEEEEeCCcccCceecCCCCceEE--EEe---CeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           93 STNRVDLAVGGINPPHLHPRSSESSI--VIR---GTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        93 s~~rv~l~pgg~~~pH~Hp~a~Ei~y--Vl~---G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .+....+.||+.+.||.-+....+-+  .+.   +...+.+   +++  ....++|+++++--...|+..|.|+++-+.+
T Consensus        81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L  155 (163)
T PF05118_consen   81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GGE--TRHWREGECWVFDDSFEHEVWNNGDEDRVVL  155 (163)
T ss_dssp             EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TTE--EEB--CTEEEEE-TTS-EEEEESSSS-EEEE
T ss_pred             hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CCe--EEEeccCcEEEEeCCEEEEEEeCCCCCEEEE
Confidence            45566789999999998764322211  111   2222222   233  6788999999999999999999998765443

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=93.67  E-value=0.16  Score=37.77  Aligned_cols=29  Identities=31%  Similarity=0.531  Sum_probs=21.9

Q ss_pred             eEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384          134 VFYSKVVTAGMLFLIPRGLVHFQLNVGKE  162 (224)
Q Consensus       134 ~~~~~~l~~GDv~vvP~G~~H~~~N~G~~  162 (224)
                      +.+...-++||.+++|+|..|+..|.|..
T Consensus        79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~  107 (114)
T PF02373_consen   79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN  107 (114)
T ss_dssp             --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred             ccccceECCCCEEEECCCceEEEEeCCce
Confidence            44578889999999999999999999965

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=93.61  E-value=0.31  Score=42.94  Aligned_cols=61  Identities=13%  Similarity=0.029  Sum_probs=47.2

Q ss_pred             eCCcccCceec-CCCCceEEEEeCeEEEEEEeCCCe-EEEEEECC-CCEEEecCCCeeEEEecC
Q 040384          100 AVGGINPPHLH-PRSSESSIVIRGTVLVGIITTDNV-FYSKVVTA-GMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus       100 ~pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~-GDv~vvP~G~~H~~~N~G  160 (224)
                      -|+++..||.| +.-.|.+.|++|++.+.+.++++. .....+.+ ++.-++|++..|...-..
T Consensus        19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s   82 (287)
T PRK12335         19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS   82 (287)
T ss_pred             chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence            47888999999 566789999999999988887764 33445555 456679999999987653

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=92.94  E-value=0.76  Score=34.41  Aligned_cols=68  Identities=22%  Similarity=0.175  Sum_probs=43.0

Q ss_pred             EEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           95 NRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        95 ~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      ..+.++||+.......+..+-++||++|++.++     +.  ...+.+|+++++..|..-.+.+.+ +.+.++.+-
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~   69 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG   69 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence            457888888754333334467999999998664     22  167999999999976665555543 566665443

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=92.71  E-value=1.2  Score=33.24  Aligned_cols=60  Identities=15%  Similarity=0.026  Sum_probs=40.6

Q ss_pred             EEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384           94 TNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV  159 (224)
Q Consensus        94 ~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~  159 (224)
                      ...-.|.||-   -+....+.|++-|++|++++.+-   |....+++++|+.|.+|.+.-.-++-.
T Consensus        25 ~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lp---g~~ew~~~~aGesF~VpanssF~v~v~   84 (94)
T PF06865_consen   25 KTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLP---GEDEWQTYSAGESFEVPANSSFDVKVK   84 (94)
T ss_dssp             EEEEEE-SEC---EEEEESS-EEEEEEESEEEEEET---T-SS-EEEETT-EEEE-TTEEEEEEES
T ss_pred             ceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcC---CCcccEEeCCCCeEEECCCCeEEEEEC
Confidence            3344566766   34555688999999999999873   333478999999999999988766543

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=92.46  E-value=2.5  Score=35.71  Aligned_cols=130  Identities=12%  Similarity=0.020  Sum_probs=81.3

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ++.......+++|-.+-..=. ....+.+|++|.+.+...+++|+. ....+.+||++-...+..+...-.-.++..++ 
T Consensus        34 ~~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~-  111 (230)
T PRK09391         34 AGLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR-  111 (230)
T ss_pred             ccceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEE-
Confidence            356677788888876643323 456788999999999988877753 44556899988765544332211112333333 


Q ss_pred             Eee--------CCCCccee----------------------------hhhhhh------cC----CCCCCHHHHHhhcCC
Q 040384          169 SFN--------SQLPGTQF----------------------------VHSSLF------NT----TPPIPNEVLTKTFLV  202 (224)
Q Consensus       169 ~~~--------s~~pg~~~----------------------------~~~~lf------~~----~p~~p~evla~af~v  202 (224)
                      .++        ..+|....                            ++..|.      +.    ...++.+-||...|+
T Consensus       112 ~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGi  191 (230)
T PRK09391        112 LIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLGL  191 (230)
T ss_pred             EEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHCC
Confidence            222        12333210                            111111      10    113678999999999


Q ss_pred             CHHHHHHHHhccCCCccee
Q 040384          203 GDEVINAIKAAITSAQLGH  221 (224)
Q Consensus       203 ~~~~v~~l~~~~~~~~~i~  221 (224)
                      +.+++.++.+.+.+.++|.
T Consensus       192 sretlsR~L~~L~~~GlI~  210 (230)
T PRK09391        192 TIETVSRALSQLQDRGLIG  210 (230)
T ss_pred             CHHHHHHHHHHHHHCCcEE
Confidence            9999999998888888885

>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]

Probab=92.46  E-value=0.47  Score=38.89  Aligned_cols=77  Identities=21%  Similarity=0.238  Sum_probs=51.0

Q ss_pred             EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEE--eCCC----eEEEEEECCCCEEEecCCCeeEEEecCCccEE
Q 040384           92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII--TTDN----VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVL  165 (224)
Q Consensus        92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v--~~~~----~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~  165 (224)
                      +++..+++.||-+.++|-| .-.-++=|++|.=+-.+-  +.++    ....+...+|+|-.-| |.+|.+.|+|+....
T Consensus        73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~lSp-gdihsv~n~~sdrs~  150 (191)
T COG5553          73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVHLSP-GDIHSVANTGSDRSG  150 (191)
T ss_pred             EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEeeCC-CCeeeecccCCCccc
Confidence            7889999999999999999 667778888885332221  1111    1224567778777444 888888887765443


Q ss_pred             EEEEe
Q 040384          166 FFPSF  170 (224)
Q Consensus       166 ~~~~~  170 (224)
                      .+-++
T Consensus       151 aiHvy  155 (191)
T COG5553         151 AIHVY  155 (191)
T ss_pred             eEEEE
Confidence            33333

>PRK10579 hypothetical protein; Provisional

Probab=92.25  E-value=2.5  Score=31.55  Aligned_cols=55  Identities=22%  Similarity=0.161  Sum_probs=42.9

Q ss_pred             EEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384           98 DLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN  158 (224)
Q Consensus        98 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N  158 (224)
                      .|.||-   .+.-..+.|+.-|++|++++.+-   |....+++++|+.|-+|.+.-.-++.
T Consensus        29 Vm~pGe---y~F~T~~~E~MeivsG~l~V~Lp---g~~ew~~~~aG~sF~VpanssF~l~v   83 (94)
T PRK10579         29 VMAEGE---YTFSTAEPEEMTVISGALNVLLP---GATDWQVYEAGEVFNVPGHSEFHLQV   83 (94)
T ss_pred             EEeeeE---EEEcCCCcEEEEEEeeEEEEECC---CCcccEEeCCCCEEEECCCCeEEEEE
Confidence            455655   45556689999999999999873   33347899999999999998766654

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=92.16  E-value=0.14  Score=44.76  Aligned_cols=76  Identities=17%  Similarity=0.211  Sum_probs=44.9

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      ++....+.++.|---.+|+|+ ..|=.||++|++..+.-..   .....|.+|..|--|....|... .++++++++.-.
T Consensus       170 ~~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~---~~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRt  244 (251)
T PF14499_consen  170 QYTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGA---SNFGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRT  244 (251)
T ss_dssp             EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEE---ETTEEEEE-TT-EE--E-------EESS-EEEEEEE
T ss_pred             ceeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeeccc---CCCccccCCcccccCCccccccc-ccCCCEEEEEEE
Confidence            456677888888889999995 5899999999998864321   12479999999999999999998 667778877655


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      +
T Consensus       245 d  245 (251)
T PF14499_consen  245 D  245 (251)
T ss_dssp             S
T ss_pred             C
Confidence            4

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.71  E-value=2  Score=39.46  Aligned_cols=67  Identities=12%  Similarity=0.048  Sum_probs=48.3

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      .|+.+....+..+-....-+.-+..|++|+.+|++++--.  -|   ...+++||+.+||+|+....+-.+.
T Consensus       123 ~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te--~G---~l~v~pgeiavIPRG~~frve~~~~  189 (427)
T COG3508         123 DGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTE--LG---VLEVEPGEIAVIPRGTTFRVELKDG  189 (427)
T ss_pred             CceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEe--ec---eEEecCCcEEEeeCCceEEEEecCC
Confidence            3566555444444333566777889999999999986532  24   4799999999999999988765443

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=91.27  E-value=4.3  Score=33.23  Aligned_cols=127  Identities=10%  Similarity=0.071  Sum_probs=75.7

Q ss_pred             EEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EEEEEECCCCEEEecC----CCeeEEEecCCccEEEEEE
Q 040384           95 NRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FYSKVVTAGMLFLIPR----GLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        95 ~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~GDv~vvP~----G~~H~~~N~G~~~a~~~~~  169 (224)
                      ....+++|..+... -.....+.+|++|.+++...+.+|+ .....+.+||++-...    ...+...-...++..++.+
T Consensus        21 ~~~~~~kg~~l~~~-g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i   99 (211)
T PRK11753         21 HIHKYPAKSTLIHA-GEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI   99 (211)
T ss_pred             eEEEeCCCCEEEeC-CCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence            45677777766432 2235689999999999987776654 4456789999984432    2122111112334444332


Q ss_pred             ee-------CCCCccee----------------------------hhhhhh------cC--CC-----CCCHHHHHhhcC
Q 040384          170 FN-------SQLPGTQF----------------------------VHSSLF------NT--TP-----PIPNEVLTKTFL  201 (224)
Q Consensus       170 ~~-------s~~pg~~~----------------------------~~~~lf------~~--~p-----~~p~evla~af~  201 (224)
                      =.       ..+|....                            ++..|+      +.  .|     .++.+-||+-+|
T Consensus       100 ~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG  179 (211)
T PRK11753        100 SYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVG  179 (211)
T ss_pred             cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhC
Confidence            10       12333310                            111111      00  00     377799999999


Q ss_pred             CCHHHHHHHHhccCCCcceec
Q 040384          202 VGDEVINAIKAAITSAQLGHR  222 (224)
Q Consensus       202 v~~~~v~~l~~~~~~~~~i~r  222 (224)
                      ++.+++.++.+.+.+.++|..
T Consensus       180 ~tr~tvsR~l~~l~~~gii~~  200 (211)
T PRK11753        180 CSREMVGRVLKMLEDQGLISA  200 (211)
T ss_pred             CCHHHHHHHHHHHHHCCCEEe
Confidence            999999999999888888764

>COG3806 ChrR Transcriptional activator [Transcription]

Probab=91.27  E-value=0.67  Score=39.19  Aligned_cols=90  Identities=14%  Similarity=0.165  Sum_probs=67.0

Q ss_pred             cCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEe
Q 040384           69 SNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLI  148 (224)
Q Consensus        69 ~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vv  148 (224)
                      ....|+++..+...+     .-..+++++.+.||...|-|+| -.-|.+.|++|.    +-+++|     .+.+||+..-
T Consensus       110 W~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH-~G~E~t~vl~G~----~sde~G-----~y~vgD~~~~  174 (216)
T COG3806         110 WLGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTH-VGIERTAVLEGA----FSDENG-----EYLVGDFTLA  174 (216)
T ss_pred             eecCCcceeecccCC-----CCCceeEEEEeccCcccccccc-cceEEEEEEeec----cccCCC-----ccccCceeec
Confidence            445666665554322     2257899999999999999999 578999999997    445554     6788999999


Q ss_pred             cCCCeeEEEecCCccEEEEEEeeCC
Q 040384          149 PRGLVHFQLNVGKENVLFFPSFNSQ  173 (224)
Q Consensus       149 P~G~~H~~~N~G~~~a~~~~~~~s~  173 (224)
                      +.+.-|.-.-..+.++..+++++.+
T Consensus       175 d~~v~H~piv~~~~eClcl~al~~~  199 (216)
T COG3806         175 DGTVQHSPIVLPPGECLCLAALDGP  199 (216)
T ss_pred             CCccccccccCCCCCceEEEEcCCC
Confidence            9999998544556677778777643

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=91.23  E-value=1.1  Score=39.06  Aligned_cols=66  Identities=15%  Similarity=0.137  Sum_probs=44.4

Q ss_pred             cEEEEEEEEeCCccc-----CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384           91 GISTNRVDLAVGGIN-----PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus        91 gis~~rv~l~pgg~~-----~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      ++.+.++...+..+.     ..|.+.+.-.++++++|++.+..   +|+  ...+++||++++|.+.+|.+.-.++
T Consensus        44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~l~~G~~~l~~~~~p~~~~~~~~  114 (302)
T PRK09685         44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DDR--QVQLAAGDITLIDASRPCSIYPQGL  114 (302)
T ss_pred             CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CCe--EEEEcCCCEEEEECCCCcEeecCCC
Confidence            455666665554322     23444344456778999988775   455  5789999999999999988754443

>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=90.71  E-value=7.3  Score=31.02  Aligned_cols=97  Identities=15%  Similarity=0.068  Sum_probs=62.4

Q ss_pred             CCCceEEEeecccCCCCc------cccEEEEEEEEeCCcccCceecCCCCceEEEEeC-eEEEEEEeCCCeEEEEEEC--
Q 040384           71 AFGRAVTEGNVHEFPGVN------TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRG-TVLVGIITTDNVFYSKVVT--  141 (224)
Q Consensus        71 ~~g~~~~~~~~~~~P~l~------~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G-~~~v~~v~~~~~~~~~~l~--  141 (224)
                      +.||..++..........      ....+....-|.++.....|-- +++|+.+-..| .+++.+++++|+..+..|.  
T Consensus        14 pEGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d   92 (139)
T PF06172_consen   14 PEGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPD   92 (139)
T ss_dssp             TTSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESST
T ss_pred             CCCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCC
Confidence            466666666544322111      2345666677888777766654 78999998888 6899999999887776663  


Q ss_pred             --CC--CEEEecCCCeeEEEecCCccEEEEE
Q 040384          142 --AG--MLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       142 --~G--Dv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                        +|  =.++||+|.....+..+...-.+++
T Consensus        93 ~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvs  123 (139)
T PF06172_consen   93 LAAGERPQVVVPAGTWQAAELEPEGDYSLVS  123 (139)
T ss_dssp             TCTTEBSEEEE-TTSEEEEEECESSSEEEEE
T ss_pred             CCCCceEEEEECCCEEEEccccCCCCEEEEE
Confidence              44  3688999998877544444444444

; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=90.03  E-value=1.1  Score=30.76  Aligned_cols=56  Identities=18%  Similarity=0.054  Sum_probs=41.6

Q ss_pred             EEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384           98 DLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN  158 (224)
Q Consensus        98 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N  158 (224)
                      .|.||.....+-  .+...+-|.+|++-+..   ++....+-|++||.+.+++|.--++..
T Consensus         3 ~L~~g~~~~lr~--~~~~~l~v~~G~vWlT~---~g~~~D~~L~~G~~l~l~~g~~vvl~a   58 (63)
T PF11142_consen    3 ELAPGETLSLRA--AAGQRLRVESGRVWLTR---EGDPDDYWLQAGDSLRLRRGGRVVLSA   58 (63)
T ss_pred             EeCCCceEEeEc--CCCcEEEEccccEEEEC---CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence            466666665553  34455999999998775   444557999999999999998777653

>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]

Probab=89.96  E-value=1.9  Score=36.36  Aligned_cols=65  Identities=25%  Similarity=0.305  Sum_probs=43.0

Q ss_pred             EEEEeCCcccCceecCCCCceEEEE-eCeEEEEEEeCC----------------CeEE------EEEECCCCEEEecCCC
Q 040384           96 RVDLAVGGINPPHLHPRSSESSIVI-RGTVLVGIITTD----------------NVFY------SKVVTAGMLFLIPRGL  152 (224)
Q Consensus        96 rv~l~pgg~~~pH~Hp~a~Ei~yVl-~G~~~v~~v~~~----------------~~~~------~~~l~~GDv~vvP~G~  152 (224)
                      ...+.+|.+.|.|.|++-.|=++=- .|++++.....+                |+..      ..+|++|+.+-+|+|.
T Consensus        90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~  169 (225)
T COG3822          90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL  169 (225)
T ss_pred             eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence            4567899999999998654433222 234444433211                1111      3689999999999999


Q ss_pred             eeEEEecC
Q 040384          153 VHFQLNVG  160 (224)
Q Consensus       153 ~H~~~N~G  160 (224)
                      .||+..-+
T Consensus       170 ~HsFwae~  177 (225)
T COG3822         170 YHSFWAEE  177 (225)
T ss_pred             eeeeeecC
Confidence            99987644

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=89.74  E-value=2.8  Score=38.94  Aligned_cols=59  Identities=12%  Similarity=0.094  Sum_probs=42.1

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL  157 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~  157 (224)
                      .+.+.++.+..+..   ++..+..++++|++|++++..   ++.  +..|++|+++++|++......
T Consensus       320 ~F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~---~~~--~~~l~~G~~~fipa~~~~~~~  378 (389)
T PRK15131        320 DFAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWK---GEQ--QLTLKPGESAFIAANESPVTV  378 (389)
T ss_pred             CcEEEEEEECCceE---EecCCCcEEEEEEcceEEEEe---CCe--EEEECCCCEEEEeCCCccEEE
Confidence            46677777755422   222356799999999998753   333  478999999999998776654

>PLN02288 mannose-6-phosphate isomerase

Probab=89.39  E-value=1.1  Score=41.64  Aligned_cols=58  Identities=16%  Similarity=0.221  Sum_probs=40.9

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCC
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGL  152 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~  152 (224)
                      .+++.++.+.++.......+ +..++++|++|++++..   ++......+++|+++++|++.
T Consensus       333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~---~~~~~~~~l~~G~~~fv~a~~  390 (394)
T PLN02288        333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST---GSSEDGTAAKRGDVFFVPAGT  390 (394)
T ss_pred             ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec---CCccceEEEeceeEEEEeCCC
Confidence            67888888887753221112 56799999999998853   222123579999999999864

>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine

Probab=89.12  E-value=2.1  Score=36.22  Aligned_cols=85  Identities=19%  Similarity=0.173  Sum_probs=60.4

Q ss_pred             CccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC----------eEEEE-------EECCCC-EEEe
Q 040384           87 VNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN----------VFYSK-------VVTAGM-LFLI  148 (224)
Q Consensus        87 l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~----------~~~~~-------~l~~GD-v~vv  148 (224)
                      .++-.+++....|++|+.+|+|=||+=+-+.-|+.|++.+.-.+--.          +....       .-.+++ .+.-
T Consensus        39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~  118 (200)
T PF07847_consen   39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY  118 (200)
T ss_pred             EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence            44557888889999999999999999888888999999987654211          11111       123334 4444


Q ss_pred             cC--CCeeEEEecCCccEEEEEEeeC
Q 040384          149 PR--GLVHFQLNVGKENVLFFPSFNS  172 (224)
Q Consensus       149 P~--G~~H~~~N~G~~~a~~~~~~~s  172 (224)
                      |+  |-+|.+.+.+ +++.++-++.-
T Consensus       119 P~~ggNiH~f~a~~-~p~AflDIL~P  143 (200)
T PF07847_consen  119 PTSGGNIHEFTALT-GPCAFLDILAP  143 (200)
T ss_pred             cCCCCeeEEEEeCC-CCeEEEEEccC
Confidence            65  4899999887 78888877753

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=88.73  E-value=2.5  Score=36.44  Aligned_cols=79  Identities=15%  Similarity=0.125  Sum_probs=58.2

Q ss_pred             cCCCCccccEEEEEEEEeCCcccCc-eecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384           83 EFPGVNTQGISTNRVDLAVGGINPP-HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus        83 ~~P~l~~~gis~~rv~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      -.|.--..++-+..+.++||+..|- -+|-- .-=.||++|++...+   |+.  ...+++||.+..-+-.+.+.+..|.
T Consensus       173 v~P~d~r~Dmhv~ivsFePGa~ip~aEtHvm-EHGlyvLeGk~vYrL---n~d--wv~V~aGD~mwm~A~cpQacyagG~  246 (264)
T COG3257         173 VLPKELRFDMHVHIVSFEPGASIPYAETHVM-EHGLYVLEGKGVYRL---NNN--WVPVEAGDYIWMGAYCPQACYAGGR  246 (264)
T ss_pred             eCccccCcceEEEEEEecCCcccchhhhhhh-hcceEEEecceEEee---cCc--eEEeecccEEEeeccChhhhccCCC
Confidence            3444445578999999999999873 45522 335799999998776   222  6799999999999988888887776


Q ss_pred             ccEEEE
Q 040384          162 ENVLFF  167 (224)
Q Consensus       162 ~~a~~~  167 (224)
                      .....+
T Consensus       247 g~frYL  252 (264)
T COG3257         247 GAFRYL  252 (264)
T ss_pred             CceEEE
Confidence            644433

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.07  E-value=0.38  Score=45.71  Aligned_cols=63  Identities=21%  Similarity=0.238  Sum_probs=43.3

Q ss_pred             EEEEEeCCc--ccCceecCCCCceEEEEeCeEEEEEEeCCC--------------------eEEEEEECCCCEEEecCCC
Q 040384           95 NRVDLAVGG--INPPHLHPRSSESSIVIRGTVLVGIITTDN--------------------VFYSKVVTAGMLFLIPRGL  152 (224)
Q Consensus        95 ~rv~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~--------------------~~~~~~l~~GDv~vvP~G~  152 (224)
                      +.+.|.|-|  -.+|||- +-.-++.=++|+=+-.+-.|.-                    -++...|++||+++||+|.
T Consensus       319 aNvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~  397 (629)
T KOG3706|consen  319 ANVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGT  397 (629)
T ss_pred             cceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcc
Confidence            345565544  4789998 5555666788875555444431                    1235789999999999999


Q ss_pred             eeEEEe
Q 040384          153 VHFQLN  158 (224)
Q Consensus       153 ~H~~~N  158 (224)
                      +|-...
T Consensus       398 IHQA~t  403 (629)
T KOG3706|consen  398 IHQADT  403 (629)
T ss_pred             eeeccc
Confidence            998643

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=88.07  E-value=4.8  Score=35.83  Aligned_cols=60  Identities=18%  Similarity=0.204  Sum_probs=42.6

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL  157 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~  157 (224)
                      -.+++.++.+......   ...+...+++|++|++++..   ++.  ...+++|+.+++|++.-.+..
T Consensus       233 ~~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i  292 (302)
T TIGR00218       233 EYFSVYKWDISGKAEF---IQQQSALILSVLEGSGRIKS---GGK--TLPLKKGESFFIPAHLGPFTI  292 (302)
T ss_pred             CCeEEEEEEeCCceee---ccCCCcEEEEEEcceEEEEE---CCE--EEEEecccEEEEccCCccEEE
Confidence            3677888887643211   12246789999999998853   333  578999999999999865554

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=86.47  E-value=1.5  Score=37.54  Aligned_cols=53  Identities=17%  Similarity=0.355  Sum_probs=43.4

Q ss_pred             CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384          106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus       106 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      --|..+ ..|++|=.+|....-+++. ++.....+++||++..|....|.-+.-.
T Consensus        47 dyHiee-geE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqRFa   99 (279)
T KOG3995|consen   47 DYHIEE-GEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFA   99 (279)
T ss_pred             ccccCC-cchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhhhc
Confidence            346664 5899999999999999875 5666889999999999999999854333

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=86.39  E-value=6.2  Score=35.07  Aligned_cols=76  Identities=18%  Similarity=0.197  Sum_probs=47.2

Q ss_pred             ccEEEEEEEEeCCc---ccCceecCCCCceEE-E--EeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 040384           90 QGISTNRVDLAVGG---INPPHLHPRSSESSI-V--IRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN  163 (224)
Q Consensus        90 ~gis~~rv~l~pgg---~~~pH~Hp~a~Ei~y-V--l~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~  163 (224)
                      -.+-+....+.||+   ..|||.|.+..|..| -  -++.-...+..+-++.....++-+|++++|+=.+|.-.  |..+
T Consensus       173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~  250 (276)
T PRK00924        173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSN  250 (276)
T ss_pred             ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Cccc
Confidence            45677777889999   469999987777544 1  12211122111112222378999999999999999863  4444


Q ss_pred             EEEE
Q 040384          164 VLFF  167 (224)
Q Consensus       164 a~~~  167 (224)
                      -.|+
T Consensus       251 y~fi  254 (276)
T PRK00924        251 YTFI  254 (276)
T ss_pred             cEEE
Confidence            3333

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=86.37  E-value=4  Score=37.63  Aligned_cols=76  Identities=13%  Similarity=0.160  Sum_probs=52.6

Q ss_pred             CCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 040384           84 FPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN  163 (224)
Q Consensus        84 ~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~  163 (224)
                      .|-..  .+.+-+++++.|.....-.- +...|+.|++|++++.--.  +.  ...+++|||++||+.+.-.+ +..+++
T Consensus       327 ~Ppi~--eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~-~~~sd~  398 (411)
T KOG2757|consen  327 DPPIE--EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHL-SSSSDP  398 (411)
T ss_pred             CCCCc--ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCcee-eccCcc
Confidence            45555  67888899988765333333 4678999999999887421  22  58999999999999876544 334444


Q ss_pred             EEEE
Q 040384          164 VLFF  167 (224)
Q Consensus       164 a~~~  167 (224)
                      ...+
T Consensus       399 ~~~y  402 (411)
T KOG2757|consen  399 FLGY  402 (411)
T ss_pred             eeee
Confidence            4444

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=85.84  E-value=9.3  Score=29.74  Aligned_cols=42  Identities=10%  Similarity=0.013  Sum_probs=31.8

Q ss_pred             ceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384          115 ESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus       115 Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      -+.+.++|+.++..   +++  ...+.+||+++++.+..+.....++
T Consensus        57 ~l~~~~~G~~~~~~---~g~--~~~~~pg~~~l~d~~~~~~~~~~~~   98 (172)
T PF14525_consen   57 LLVLPLSGSARIEQ---GGR--EVELAPGDVVLLDPGQPYRLEFSAG   98 (172)
T ss_pred             EEEEEccCCEEEEE---CCE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence            35567778887664   454  6899999999999999987765533

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=85.67  E-value=1.6  Score=40.22  Aligned_cols=71  Identities=23%  Similarity=0.315  Sum_probs=46.3

Q ss_pred             CCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEE--EEEEeCCC--e---------------EEEEEECCCC
Q 040384           84 FPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVL--VGIITTDN--V---------------FYSKVVTAGM  144 (224)
Q Consensus        84 ~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~--v~~v~~~~--~---------------~~~~~l~~GD  144 (224)
                      +|.-+.-.+.++  ...+||.+-|||-+.   =+|.+||.++  -.+....+  +               .....+.+||
T Consensus       113 lP~wr~ddiMIS--~a~~GGgvg~H~D~Y---DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGD  187 (383)
T COG2850         113 LPDWRIDDIMIS--FAAPGGGVGPHFDQY---DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGD  187 (383)
T ss_pred             CccccccceEEE--EecCCCccCccccch---heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCc
Confidence            455554444444  567899999999854   3566666543  33321111  1               1236899999


Q ss_pred             EEEecCCCeeEEEec
Q 040384          145 LFLIPRGLVHFQLNV  159 (224)
Q Consensus       145 v~vvP~G~~H~~~N~  159 (224)
                      ++++|+|++|+-...
T Consensus       188 iLYiPp~~~H~gvae  202 (383)
T COG2850         188 ILYIPPGFPHYGVAE  202 (383)
T ss_pred             eeecCCCCCcCCccc
Confidence            999999999997655

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=84.32  E-value=9.6  Score=31.96  Aligned_cols=123  Identities=6%  Similarity=-0.127  Sum_probs=73.5

Q ss_pred             EEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEEecC---C--CeeEEEecCCccEEEEEEe
Q 040384           97 VDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFLIPR---G--LVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        97 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~vvP~---G--~~H~~~N~G~~~a~~~~~~  170 (224)
                      ..+++|..+-. -......+.+|++|.+++...+.+|+. ....+.+||++-...   +  ..+....  .++..++ .+
T Consensus        34 ~~~~kge~l~~-~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A--~~~~~i~-~i  109 (226)
T PRK10402         34 FHFLAREYIVQ-EGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQA--IEECWCL-AL  109 (226)
T ss_pred             eeeCCCCEEEc-CCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEE--eccEEEE-EE
Confidence            45666665422 222356899999999999998877753 345678999886532   1  1112222  2233333 22


Q ss_pred             e--------CCCCccee----------------------------hhhhhhc----CCCCCCHHHHHhhcCCCHHHHHHH
Q 040384          171 N--------SQLPGTQF----------------------------VHSSLFN----TTPPIPNEVLTKTFLVGDEVINAI  210 (224)
Q Consensus       171 ~--------s~~pg~~~----------------------------~~~~lf~----~~p~~p~evla~af~v~~~~v~~l  210 (224)
                      +        ..+|.+..                            ++..|..    ....++.+-||..+|++.+++.+.
T Consensus       110 ~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~L~~~~~~~~~~~t~~~lA~~lG~sretvsR~  189 (226)
T PRK10402        110 PMKDCRPLLLNDALFLRKLCKFLSHKNYRNIVSLTQNQSFPLENRLAAFILLTQEGDLYHEKHTQAAEYLGVSYRHLLYV  189 (226)
T ss_pred             EHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCcccchHHHHHHHHCCcHHHHHHH
Confidence            2        12332210                            1111111    111256789999999999999999


Q ss_pred             HhccCCCcceecC
Q 040384          211 KAAITSAQLGHRP  223 (224)
Q Consensus       211 ~~~~~~~~~i~r~  223 (224)
                      .+.+.+.|+|.+.
T Consensus       190 L~~L~~~G~I~~~  202 (226)
T PRK10402        190 LAQFIQDGYLKKS  202 (226)
T ss_pred             HHHHHHCCCEEee
Confidence            9999999888653

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=83.99  E-value=8.5  Score=32.19  Aligned_cols=122  Identities=11%  Similarity=0.034  Sum_probs=71.0

Q ss_pred             EEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEEecC----CCeeEEEecCCccEEEEEEee
Q 040384           97 VDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFLIPR----GLVHFQLNVGKENVLFFPSFN  171 (224)
Q Consensus        97 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~vvP~----G~~H~~~N~G~~~a~~~~~~~  171 (224)
                      ..+++|..+-.- -.....+.+|++|.+++...+++|+. ....+.+||++-...    ...+.....  ++..++. ++
T Consensus        40 ~~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~~~~~a~--~~~~i~~-ip  115 (235)
T PRK11161         40 KPIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHPSFAQAL--ETSMVCE-IP  115 (235)
T ss_pred             eeecCCCEeECC-CCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCcceEEEe--ccEEEEE-EE
Confidence            356666544222 22356788999999999988877654 334558999985432    111112111  2333322 22


Q ss_pred             C--------CCCcce----------------------------ehhhhhh------cC--------CCCCCHHHHHhhcC
Q 040384          172 S--------QLPGTQ----------------------------FVHSSLF------NT--------TPPIPNEVLTKTFL  201 (224)
Q Consensus       172 s--------~~pg~~----------------------------~~~~~lf------~~--------~p~~p~evla~af~  201 (224)
                      .        .+|...                            .++..|.      +.        .-.++.+-||...|
T Consensus       116 ~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG  195 (235)
T PRK11161        116 FETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLG  195 (235)
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhC
Confidence            1        123220                            0111111      10        01378899999999


Q ss_pred             CCHHHHHHHHhccCCCcceec
Q 040384          202 VGDEVINAIKAAITSAQLGHR  222 (224)
Q Consensus       202 v~~~~v~~l~~~~~~~~~i~r  222 (224)
                      ++.+.+.|+.+.+...++|..
T Consensus       196 ~sr~tvsR~l~~l~~~g~I~~  216 (235)
T PRK11161        196 LTVETISRLLGRFQKSGMLAV  216 (235)
T ss_pred             CcHHHHHHHHHHHHHCCCEEe
Confidence            999999999999888888864

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=83.60  E-value=7.4  Score=28.20  Aligned_cols=60  Identities=12%  Similarity=0.026  Sum_probs=41.3

Q ss_pred             CCcccCceecCCCC--ceEEEEeCeEEEEEEeCCCe--EEEEEECCCCEEEecCCCeeEEEecCC
Q 040384          101 VGGINPPHLHPRSS--ESSIVIRGTVLVGIITTDNV--FYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus       101 pgg~~~pH~Hp~a~--Ei~yVl~G~~~v~~v~~~~~--~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      |.++...|.- .+-  ..+-|++|++.....++++.  .....+++|+.-++++...|.+.-.++
T Consensus        12 P~~l~~~H~T-K~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~   75 (82)
T PF09313_consen   12 PAALLERHNT-KAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD   75 (82)
T ss_dssp             -GGGGSSBCC-STTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred             cHHHHhhcCC-CCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence            3445556644 232  34569999999998887542  235678999999999999999987765

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=82.46  E-value=14  Score=32.40  Aligned_cols=75  Identities=28%  Similarity=0.325  Sum_probs=39.3

Q ss_pred             ceEEEeecccCCCCccccEEEEEEEEeCCc---ccCceecCCC--------CceEEEE-e---CeEEEEEEeCC-CeEEE
Q 040384           74 RAVTEGNVHEFPGVNTQGISTNRVDLAVGG---INPPHLHPRS--------SESSIVI-R---GTVLVGIITTD-NVFYS  137 (224)
Q Consensus        74 ~~~~~~~~~~~P~l~~~gis~~rv~l~pgg---~~~pH~Hp~a--------~Ei~yVl-~---G~~~v~~v~~~-~~~~~  137 (224)
                      ..|......+.+.  .-.+-+..+. .|+|   ..|||.|.+.        .|+.|-. +   |-+.-.+-.++ ..-..
T Consensus       135 R~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~  211 (261)
T PF04962_consen  135 RTVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH  211 (261)
T ss_dssp             EEEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE
T ss_pred             EEEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE
Confidence            4455555555552  2245566555 6666   3699999763        4555432 2   32322222222 12236


Q ss_pred             EEECCCCEEEecCC
Q 040384          138 KVVTAGMLFLIPRG  151 (224)
Q Consensus       138 ~~l~~GDv~vvP~G  151 (224)
                      ..++-||++.+|.|
T Consensus       212 ~~V~~~d~V~iP~g  225 (261)
T PF04962_consen  212 YVVRNGDAVLIPSG  225 (261)
T ss_dssp             EEEETTEEEEESTT
T ss_pred             EEEECCCEEEeCCC
Confidence            78999999999999

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=80.35  E-value=6.6  Score=31.94  Aligned_cols=125  Identities=13%  Similarity=0.041  Sum_probs=73.1

Q ss_pred             EEEEeCCcccCceecC-CCCceEEEEeCeEEEEEEeCCCeEE-EEEECCCCEEEecC--C--CeeEEEecCCccEEEEEE
Q 040384           96 RVDLAVGGINPPHLHP-RSSESSIVIRGTVLVGIITTDNVFY-SKVVTAGMLFLIPR--G--LVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        96 rv~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~~~~~-~~~l~~GDv~vvP~--G--~~H~~~N~G~~~a~~~~~  169 (224)
                      ...+++|..+-----+ .+..+.+|++|.+++...+++|+.. ...+.+||++=.+.  +  ..++...  .++..++. 
T Consensus         8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A--~~~~~v~~-   84 (202)
T PRK13918          8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEA--VTDSRIDV-   84 (202)
T ss_pred             eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEE--cCceEEEE-
Confidence            3456666554221111 2467999999999999988877643 45569999885531  1  1111221  22333332 


Q ss_pred             eeCC--CCcce----------------------------ehhhhhh------c----C----CCCCCHHHHHhhcCCCHH
Q 040384          170 FNSQ--LPGTQ----------------------------FVHSSLF------N----T----TPPIPNEVLTKTFLVGDE  205 (224)
Q Consensus       170 ~~s~--~pg~~----------------------------~~~~~lf------~----~----~p~~p~evla~af~v~~~  205 (224)
                      ++.+  +|...                            .++..+.      +    .    +..++.+-||...|++.+
T Consensus        85 i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~~~~~t~~~iA~~lG~tre  164 (202)
T PRK13918         85 LNPALMSAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALLELSDTPLATQEDSGETMIYATHDELAAAVGSVRE  164 (202)
T ss_pred             EEHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCCCCCeEEecCCHHHHHHHhCccHH
Confidence            2211  12110                            0111110      0    0    123789999999999999


Q ss_pred             HHHHHHhccCCCcceecC
Q 040384          206 VINAIKAAITSAQLGHRP  223 (224)
Q Consensus       206 ~v~~l~~~~~~~~~i~r~  223 (224)
                      ++.++.+.+...++|.+.
T Consensus       165 tvsR~l~~l~~~g~I~~~  182 (202)
T PRK13918        165 TVTKVIGELSREGYIRSG  182 (202)
T ss_pred             HHHHHHHHHHHCCCEEcC
Confidence            999999999998888743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2ete_A	201	Recombinant Oxalate Oxidase In Complex With Glycola		4e-51
1fi2_A	201	Crystal Structure Of Germin (Oxalate Oxidase) Lengt		5e-51
2et7_A	201	Structural And Spectroscopic Insights Into The Mech		2e-50

>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate Length = 201

Iteration: 1
 Score =  197 bits (501), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 131/196 (66%), Gaps = 7/196 (3%)
Query: 23  ADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFFD--LSEEGNLSNAFGRAVTEG 79
           +DPDPLQD C+ADLD K +SVNG  CKP +E   DDF F   L++ GN S   G AVTE 
Sbjct: 1   SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 80  NVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII---TTDNVFY 136
           +V E+PG NT G+S NRVD A GG NPPH+HPR++E  +V++G +LVGI+    + N  Y
Sbjct: 60  DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 137 SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVL 196
           S+VV AG  F+IPRGL+HFQ NVGK       SFNSQ PG  FV  +LF + PPIP  VL
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 197 TKTFLVGDEVINAIKA 212
           TK   V   V+  +K+
Sbjct: 180 TKALRVEAGVVELLKS 195

>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase) Length = 201

Iteration: 1
 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 130/195 (66%), Gaps = 7/195 (3%)
Query: 24  DPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFFD--LSEEGNLSNAFGRAVTEGN 80
           DPDPLQD C+ADLD K +SVNG  CKP +E   DDF F   L++ GN S   G AVTE +
Sbjct: 2   DPDPLQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 81  VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII---TTDNVFYS 137
           V E+PG NT G+S NRVD A GG NPPH+HPR++E  +V++G +LVGI+    + N  YS
Sbjct: 61  VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 138 KVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLT 197
           +VV AG  F+IPRGL+HFQ NVGK       SFNSQ PG  FV  +LF + PPIP  VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 198 KTFLVGDEVINAIKA 212
           K   V   V+  +K+
Sbjct: 181 KALRVEAGVVELLKS 195

>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism Of Oxalate Oxidase Length = 201

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 130/196 (66%), Gaps = 7/196 (3%)
Query: 23  ADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFFD--LSEEGNLSNAFGRAVTEG 79
           +DPDPLQD C+ADLD K +SVNG  CKP +E   DDF F   L++ GN S   G AVTE 
Sbjct: 1   SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 80  NVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII---TTDNVFY 136
           +V E+PG NT G+S  RVD A GG NPPH+HPR++E  +V++G +LVGI+    + N  Y
Sbjct: 60  DVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 137 SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVL 196
           S+VV AG  F+IPRGL+HFQ NVGK       SFNSQ PG  FV  +LF + PPIP  VL
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 197 TKTFLVGDEVINAIKA 212
           TK   V   V+  +K+
Sbjct: 180 TKALRVEAGVVELLKS 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	2e-60
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	3e-35
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	4e-34
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	6e-30
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	3e-33
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	2e-32
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	2e-30
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	3e-10
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	1e-29
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	1e-21
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	2e-29
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	1e-08
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	3e-28
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	3e-09
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	3e-28
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	5e-27
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	9e-27
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	1e-26
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	8e-16
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	1e-08
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	4e-13
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	6e-05
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	1e-11
1v70_A	105	Probable antibiotics synthesis protein; structural	1e-09
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	4e-09
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	4e-09
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	6e-08
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	9e-08
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	2e-07
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	2e-07
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	8e-07
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	2e-06
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	2e-06
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	2e-06
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	3e-06
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	3e-06
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	4e-06
3h8u_A	125	Uncharacterized conserved protein with double-STR	5e-06
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	2e-05
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	3e-05
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	3e-05
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	5e-05
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	2e-04
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	2e-04
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	5e-04
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	9e-04

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Length = 201

 Score =  187 bits (475), Expect = 2e-60
 Identities = 103/194 (53%), Positives = 128/194 (65%), Gaps = 5/194 (2%)

Query: 24  DPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTEGNV 81
           DPDPLQD C+ADLD K +SVNG  CKP +E   D  F   L++ GN S   G AVTE +V
Sbjct: 2   DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61

Query: 82  HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIIT---TDNVFYSK 138
            E+PG NT G+S NRVD A GG NPPH+HPR++E  +V++G +LVGI+    + N  YS+
Sbjct: 62  AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121

Query: 139 VVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTK 198
           VV AG  F+IPRGL+HFQ NVGK       SFNSQ PG  FV  +LF + PPIP  VLTK
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181

Query: 199 TFLVGDEVINAIKA 212
              V   V+  +K+
Sbjct: 182 ALRVEAGVVELLKS 195

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score =  124 bits (311), Expect = 4e-34
 Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 6/155 (3%)

Query: 58  FFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESS 117
              +L  +  L +  G  +   +  EFPG  +  ++   + L  G +   H HP + E  
Sbjct: 202 HTHNLLGQQPLVSLGGNELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQ 259

Query: 118 IVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGT 177
            V+ G + + +  ++       +  G +  +P+G  H   N  ++ +     FN     +
Sbjct: 260 YVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQS 319

Query: 178 QFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKA 212
             + + L +     P+ VL  TF +  E+   +  
Sbjct: 320 IDLSTWLASN----PSSVLGNTFQISPELTKKLPV 350

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score =  112 bits (282), Expect = 6e-30
 Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 8/156 (5%)

Query: 57  DFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSES 116
            F +  S+   +    G    +   + FP     G++   + L  G I   H H  ++E 
Sbjct: 20  AFTYAFSKTPLVLYDGGT-TKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEW 76

Query: 117 SIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG 176
           + V+ G   + + + +       V  G L+  PRG  H    +G +   F   FN     
Sbjct: 77  AYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFS 136

Query: 177 --TQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAI 210
               F  +   + TP      + +        +  +
Sbjct: 137 EGATFSVTDWLSHTPI---AWVEENLGWTAAQVAQL 169

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score =  123 bits (309), Expect = 3e-33
 Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 9/172 (5%)

Query: 43  NGFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVG 102
           NG      T           +   ++ N    +VT     +FP ++   +S     L   
Sbjct: 291 NGIDETICTMRLR--HNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKN 348

Query: 103 GINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSKVVTAGMLFLIPRGLVHFQLNVGK 161
            +  PH +  ++     + G  L+ ++  +    +   +  G + ++P+  V    +   
Sbjct: 349 AMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARS-QS 407

Query: 162 ENVLFFPSFNSQLPGTQFV--HSSLFNTTPPIPNEVLTKTFLVGDEVINAIK 211
           +N  +     +  P    +   +SL N  P    EV+  TF +  +    IK
Sbjct: 408 DNFEYVSFKTNDTPMIGTLAGANSLLNALPE---EVIQHTFNLKSQQARQIK 456

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score =  121 bits (305), Expect = 2e-32
 Identities = 22/170 (12%), Positives = 57/170 (33%), Gaps = 7/170 (4%)

Query: 58  FFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESS 117
                +   ++ N    ++   N      +   G+S    +L    +  PH +  +    
Sbjct: 338 KNIGRNRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSII 397

Query: 118 IVIRGTVLVGIITTD-NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG 176
             +RG   V ++ ++ N  Y + +  G + ++P+       +   +N  +        P 
Sbjct: 398 YALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKS-QSDNFEYVAFKTDSRPS 456

Query: 177 TQFV--HSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRPK 224
              +   +S+ +  P    EV+  ++ +  E    +K            +
Sbjct: 457 IANLAGENSVIDNLPE---EVVANSYGLPREQARQLKNNNPFKFFVPPSQ 503

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score =  115 bits (289), Expect = 2e-30
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 15/172 (8%)

Query: 55  SDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSS 114
            D+ F   + +   SN FGR   E    + P +    +  + VD+  G +  PH   ++ 
Sbjct: 230 QDEPFNLRNSKPIYSNKFGR-WYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAI 288

Query: 115 ESSIVIRGTVLVGIITTDNV-------------FYSKVVTAGMLFLIPRGLVHFQLNVGK 161
              ++  G   + ++   +               Y   ++   +F+IP            
Sbjct: 289 VIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSN 348

Query: 162 ENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAA 213
            N   F   N++     F+     N    IP EVL  +F    + +  +   
Sbjct: 349 LNFFAF-GINAENNRRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKK 399

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score = 58.3 bits (140), Expect = 3e-10
 Identities = 24/161 (14%), Positives = 44/161 (27%), Gaps = 15/161 (9%)

Query: 74  RAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN 133
           R +   +       N +             +  PH H  +    +V+ GT ++ ++  D+
Sbjct: 43  RVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPDS 101

Query: 134 VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF----------PSFNSQLPGTQFVHSS 183
              S ++  G    IP G   F +N      L              F      +     S
Sbjct: 102 RD-SYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQS 160

Query: 184 LFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRPK 224
                      +L  +F    + IN +       Q      
Sbjct: 161 YLRGFSK---NILEASFDSDFKEINRVLFGEERQQQQGEES 198

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score =  112 bits (281), Expect = 1e-29
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 7/167 (4%)

Query: 46  PCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGIN 105
             +         F + L E+  + +  G+ V   +   F    T  I++  V +  G + 
Sbjct: 214 IVEGPNGEVPYPFTYRLLEQEPIESEGGK-VYIADSTNFKVSKT--IASALVTVEPGAMR 270

Query: 106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVL 165
             H HP + E    I G   + +  +D    +    AG +  +P  + H+  N+G E ++
Sbjct: 271 ELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLV 330

Query: 166 FFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKA 212
           F   F         ++  L       P   +     +G +  + +  
Sbjct: 331 FLEIFKDDHYADVSLNQWLAML----PETFVQAHLDLGKDFTDVLSK 373

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 91.1 bits (225), Expect = 1e-21
 Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 8/178 (4%)

Query: 46  PCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGIN 105
           P      V++  F F  +   +     G    E  V E P      +++  + L  G I 
Sbjct: 38  PETDHGTVSNMKFSFSDT---HNRLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIR 92

Query: 106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVL 165
             H H   +E + +I G+  V I+      +   V  G L+  P GL H      +E   
Sbjct: 93  ELHWHK-EAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQA-LEEGAE 150

Query: 166 FFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP 223
           F   F+     ++     L +     P EV+   F V  E I+ +            P
Sbjct: 151 FLLVFDDGSF-SENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLP 207

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score =  112 bits (280), Expect = 2e-29
 Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 17/175 (9%)

Query: 55  SDDFFFDL-SEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRS 113
           S+D  F+L S     SN FG+   E    + P +    I  + VD+  G +  PH + ++
Sbjct: 212 SEDEPFNLRSRNPIYSNNFGK-FFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKA 270

Query: 114 SESSIVIRGTVLVGIITTDN--------------VFYSKVVTAGMLFLIPRGLVHFQLNV 159
               ++  G   + ++                    Y   ++   +F+IP          
Sbjct: 271 IVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT 330

Query: 160 GKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAI 214
              N L F   N++     F+     N    I  +V    F    + +  +    
Sbjct: 331 SNLNFLAF-GINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQ 384

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 15/155 (9%)

Query: 74  RAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN 133
           R +   N       N +     +       I  PH H  +     V+ G  ++ ++  D+
Sbjct: 31  RLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDD 89

Query: 134 VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLF----------FPSFNSQLPGTQFVHSS 183
              S  +  G    IP G  ++ +N      L              ++     +     S
Sbjct: 90  -RDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQS 148

Query: 184 LFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQ 218
                      +L  +F    E IN +       Q
Sbjct: 149 YLQGFSH---NILETSFHSEFEEINRVLFGEEEEQ 180

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score =  109 bits (274), Expect = 3e-28
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 13/163 (7%)

Query: 62  LSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIR 121
            S +   SN +G+ + E    +   +    I  N + +  G +  PH + R++   +   
Sbjct: 252 RSRDPIYSNNYGK-LYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANE 310

Query: 122 GTVLVGII-----------TTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF 170
           G   V ++           +     Y+  ++ G + +IP             N++     
Sbjct: 311 GRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASDLNMVGI-GV 369

Query: 171 NSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAA 213
           N++     F+     N    IP +V   TF    E +  +   
Sbjct: 370 NAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLEN 412

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 9/145 (6%)

Query: 74  RAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN 133
           R +   N       N +             +  PH H  S    +V+ G  ++ ++  D 
Sbjct: 68  RLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDG 126

Query: 134 VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN--SQLPGTQFVHSSLFNTTPP- 190
              +  +  G    I  G   + +N      L    F    + PGT            P 
Sbjct: 127 RD-TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPS 185

Query: 191 ----IPNEVLTKTFLVGDEVINAIK 211
                    L  ++    + I    
Sbjct: 186 YLSAFSKNFLEASYDSPYDEIEQTL 210

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score =  110 bits (274), Expect = 3e-28
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 7/161 (4%)

Query: 60  FDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIV 119
              SE  ++ N  G  ++  N H  P +    +S  R  L    +  PH    S      
Sbjct: 290 IGRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYA 349

Query: 120 IRGTVLVGIITTD-NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQ 178
            RG   V ++       +   V  G + +IP+  V  +         +     +    T 
Sbjct: 350 TRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIK-RASDRGFEWIAFKTNDNAITN 408

Query: 179 FV--HSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSA 217
            +    S     P     VL+  + +  E    +K      
Sbjct: 409 LLAGRVSQMRMLPL---GVLSNMYRISREEAQRLKYGQQEM 446

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score =  106 bits (265), Expect = 5e-27
 Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 7/170 (4%)

Query: 57  DFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSES 116
               D   + ++       +T  N    P +    +S  +  L    +  PH +  +   
Sbjct: 288 AVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNI 347

Query: 117 SIVIRGTVLVGIITTD-NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLP 175
              +RG   + I+       + + ++ G L ++P+     +    ++   +     S+  
Sbjct: 348 MYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVK-QAFEDGFEWVSFKTSENA 406

Query: 176 GTQFV--HSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP 223
             Q +   +S   + P    +V++  + +  E    +K       L    
Sbjct: 407 MFQSLAGRTSAIRSLPI---DVVSNIYQISREEAFGLKFNRPETTLFRSS 453

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Length = 466

 Score =  105 bits (263), Expect = 9e-27
 Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 7/170 (4%)

Query: 58  FFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESS 117
              D     ++       ++  N ++ P +    +S  R  +    +  P  +  ++   
Sbjct: 289 DNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVL 348

Query: 118 IVIRGTVLVGIITTD-NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG 176
            V  G   V ++  + +  +   V+ G L  IP+G    +     E   +     +    
Sbjct: 349 YVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVK-RATSEQFRWIEFKTNANAQ 407

Query: 177 TQFV--HSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRPK 224
              +   +S+    P    EV++  + +  E    +K       L H   
Sbjct: 408 INTLAGRTSVLRGLPL---EVISNGYQISLEEARRVKFNTIETTLTHSSG 454

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score =  105 bits (262), Expect = 1e-26
 Identities = 21/157 (13%), Positives = 50/157 (31%), Gaps = 7/157 (4%)

Query: 58  FFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESS 117
                S   ++ N     +      + P +    +S     L    +  PH +  ++   
Sbjct: 324 LNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSII 383

Query: 118 IVIRGTVLVGIITTD-NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG 176
             ++G   + ++  + N  +   + AG    +P+           +   +     +   G
Sbjct: 384 YALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAA-KSLSDRFSYVAFKTNDRAG 442

Query: 177 TQFV--HSSLFNTTPPIPNEVLTKTFLVGDEVINAIK 211
              +   SS+ N  P    +V+  TF +       +K
Sbjct: 443 IARLAGTSSVINNLPL---DVVAATFNLQRNEARQLK 476

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score = 74.5 bits (182), Expect = 8e-16
 Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 26/195 (13%)

Query: 44  GFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGG 103
                 E E    +       E +LSN FG+        + P +    +    V++  G 
Sbjct: 215 VSKKGSEEEGDITNPINLREGEPDLSNNFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGA 274

Query: 104 INPPHLHPRSSESSIVIRGTVLVGIITTDNVF-------------------------YSK 138
           +  PH + ++    +V +GT  + ++                               Y+ 
Sbjct: 275 LMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTA 334

Query: 139 VVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTK 198
            +  G +F++P           + ++L F   N++     F+     N    I  +    
Sbjct: 335 RLKEGDVFIMPAAHPVAINASSELHLLGF-GINAENNHRIFLAGDKDNVIDQIEKQAKDL 393

Query: 199 TFLVGDEVINAIKAA 213
            F    E +  +   
Sbjct: 394 AFPGSGEQVEKLIKN 408

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score = 53.3 bits (127), Expect = 1e-08
 Identities = 22/168 (13%), Positives = 43/168 (25%), Gaps = 14/168 (8%)

Query: 63  SEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRG 122
           ++ G +     R +   +       N Q     +++     +  P  H  +    ++ +G
Sbjct: 20  NQNGRI-----RVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPK-HADADNILVIQQG 73

Query: 123 TVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF--NSQLPGTQFV 180
              V +   +N   S  +  G    IP G + + LN      L           PG    
Sbjct: 74  QATVTVANGNNRK-SFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFED 132

Query: 181 HSSLFNTTPP-----IPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP 223
                +              L   F      I  +     +       
Sbjct: 133 FFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEER 180

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score = 66.8 bits (162), Expect = 4e-13
 Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 21/186 (11%)

Query: 41  SVNGFPCKPETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLA 100
           +++    K  ++         LS++ N        +TE   +         +  + +++ 
Sbjct: 194 NIDSEQIKELSKHAKSSSRKSLSKQDNTIGNEFGNLTERTDNSLN------VLISSIEME 247

Query: 101 VGGINPPHLHPRSSESSIVIRGTVLVGII-------TTDNVFYSKVVTAGMLFLIPRGLV 153
            G +  PH + ++    +V  G   V ++       T +   Y   ++   +F+IP    
Sbjct: 248 EGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYP 307

Query: 154 HFQLNVGKENVLFF-----PSFNSQLPG-TQFVHSSLFNTTPPIPNEVLTKTFLVGDEVI 207
                    N   F      +  + L G T  V SS+         +VL  TF    + +
Sbjct: 308 VAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIGR--ALDGKDVLGLTFSGSGDEV 365

Query: 208 NAIKAA 213
             +   
Sbjct: 366 MKLINK 371

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 21/159 (13%), Positives = 45/159 (28%), Gaps = 17/159 (10%)

Query: 63  SEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRG 122
           ++ G++     R +   +       N +             +  P     +    +V  G
Sbjct: 28  NQYGHI-----RVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQ-QADAELLLVVRSG 81

Query: 123 TVLVGIITTD-----NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGT 177
           + ++ ++  D         S          IP G + + +N   +  L        +   
Sbjct: 82  SAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNP 141

Query: 178 QFVHSSLFNTTPP------IPNEVLTKTFLVGDEVINAI 210
           Q     L +T             +L  +F    E IN +
Sbjct: 142 QIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRV 180

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score = 62.2 bits (150), Expect = 1e-11
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 7/167 (4%)

Query: 61  DLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVI 120
              E  ++ +     ++  N H  P +    +S  R      GI  PH +  +     VI
Sbjct: 363 GNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVI 422

Query: 121 RGTVLVGIITTD-NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQF 179
           RG   V ++  + +    + V  G LF++P+     Q   G +   +F     +      
Sbjct: 423 RGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQ-QAGNQGFEYFAFKTEENAFINT 481

Query: 180 V--HSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRPK 224
           +   +S       +P+EVL   + +  E    +K            +
Sbjct: 482 LAGRTSFLRA---LPDEVLANAYQISREQARQLKYNRQETIALSSSQ 525

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 77  TEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFY 136
               + + P   ++ +  +   L  G     H+H  S +    + G     ++       
Sbjct: 13  NPEKMAKIPVFQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGE---VVVRVGEEEA 69

Query: 137 SKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167
             ++  GM    P G  H   N      L  
Sbjct: 70  --LLAPGMAAFAPAGAPHGVRNESASPALLL 98

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Length = 133

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 87  VNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLF 146
           ++ +     R+ L  G     H H    E   ++ G    G+   +       + AG + 
Sbjct: 52  MHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGE---GVFHDNGK--DVPIKAGDVC 106

Query: 147 LIPRGLVHFQLNVGKENVLFF 167
               G  H   N G  ++ F 
Sbjct: 107 FTDSGESHSIENTGNTDLEFL 127

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score = 53.0 bits (127), Expect = 4e-09
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 9/145 (6%)

Query: 74  RAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN 133
           R +   N       N +             +  PH H  S    +V+ G  ++ ++  D 
Sbjct: 23  RLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDG 81

Query: 134 VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF--NSQLPGTQFVHSSLFNTTPP- 190
              +  +  G    I  G   + +N      L    F    + PGT            P 
Sbjct: 82  RD-TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPS 140

Query: 191 ----IPNEVLTKTFLVGDEVINAIK 211
                    L  ++    + I    
Sbjct: 141 YLSAFSKNFLEASYDSPYDEIEQTL 165

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Length = 163

 Score = 49.8 bits (118), Expect = 6e-08
 Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 5/126 (3%)

Query: 64  EEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGT 123
            +   S+     ++   V        + +      ++ G   P H H    E   V++G 
Sbjct: 13  SQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGK 71

Query: 124 VLVGIITTDNVFYSK----VVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQF 179
             + + ++   +  +           F IP    H   N  +   L      S+ P   F
Sbjct: 72  GTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIF 131

Query: 180 VHSSLF 185
           ++    
Sbjct: 132 LYDDWS 137

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 50.6 bits (120), Expect = 9e-08
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN-- 163
            PH+H +  E+    +G+  +   + +    ++V+++G    +PR + H       +   
Sbjct: 64  LPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEM 123

Query: 164 -VLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTF-LVGDEVINAIKAAITSAQLGH 221
             +  P     L      +++    TP IP+   + +        I+ +++    A+L  
Sbjct: 124 TGVIVPGGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSF 183

Query: 222 RP 223
            P
Sbjct: 184 TP 185

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Length = 126

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 11/113 (9%)

Query: 59  FFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQ-----GISTNRVDLAVGGINPPHLHPRS 113
                E+   + AF       +    PG   Q      +  N V +      P H HP  
Sbjct: 3   AMSTGEQREFAPAFYDLTEVRSFSPLPGFAMQAIQGKNLMLNWVRIEPNTEMPAHEHP-H 61

Query: 114 SESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLF 166
            ++ +++ GT     +T      ++V+  GM + IP G+ H         ++ 
Sbjct: 62  EQAGVMLEGT---LELTIGEE--TRVLRPGMAYTIPGGVRHRARTFEDGCLVL 109

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 88  NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFL 147
           +          +  GG+   H HP       V++G      +  +       V  G    
Sbjct: 44  DAPNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGK---LTVLKEQGEE--TVEEGFYIF 97

Query: 148 IPRGLVHFQLNVGKENVLFF 167
           +    +H   N     V F 
Sbjct: 98  VEPNEIHGFRNDTDSEVEFL 117

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 47.9 bits (113), Expect = 8e-07
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 78  EGNVHEFPGV---------NTQG-ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVG 127
           EG  + F            +T        +    G   P H+H  + E  +V+ G + + 
Sbjct: 22  EGERYLFGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLEL- 80

Query: 128 IITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167
             T D   Y  ++ +G    IP G  H          L  
Sbjct: 81  --TLDGERY--LLISGDYANIPAGTPHSYRMQSHRTRLVS 116

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 20/164 (12%), Positives = 41/164 (25%), Gaps = 15/164 (9%)

Query: 14  LILPLSSNAADPDPLQDICIADLDAKISVNGFPCKPETEVTSDDFFFDLSEEGNLSNAFG 73
           +  P       P   +++         +V       E +        +L+E  + +  + 
Sbjct: 130 IGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPYV 189

Query: 74  RAVTEGNVHEFPGV---------NTQG-ISTNRVDLAVGGINPPHLHPRSSESSIVIRGT 123
               EG+                NT G       +   G     H H   +E+   + G 
Sbjct: 190 LESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQ 249

Query: 124 VLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167
           + +             +  G    +P   VH          +  
Sbjct: 250 MTMWT--DGQEI---QLNPGDFLHVPANTVHSYRLDSHYTKMVG 288

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 91  GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR 150
                  +++  G  PPH H        V+ G++ + +           V  G    IPR
Sbjct: 38  RFVLTEFEVSPNGSTPPHFHEWE-HEIYVLEGSMGLVLPDQGRTE---EVGPGEAIFIPR 93

Query: 151 GLVHFQLNVGKENVLFF 167
           G  H  +    +   F 
Sbjct: 94  GEPHGFVTGPGQTCRFL 110

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 6/82 (7%)

Query: 87  VNTQGISTNRVDLAVG-GINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGML 145
           +   G   +   L  G G+   H H ++ E   ++ G    G IT D       + AG  
Sbjct: 21  LALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGK---GFITIDGEKI--ELQAGDW 75

Query: 146 FLIPRGLVHFQLNVGKENVLFF 167
             I               + F 
Sbjct: 76  LRIAPDGKRQISAASDSPIGFL 97

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Length = 167

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 6/87 (6%)

Query: 81  VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVV 140
           V    G       T   ++  GG      H   +   +V+RG      +  D+      +
Sbjct: 45  VGRPAGQEAPAFETRYFEVEPGGYTTLERHE-HTHVVMVVRGH---AEVVLDDRVE--PL 98

Query: 141 TAGMLFLIPRGLVHFQLNVGKENVLFF 167
           T      I     H     G    L F
Sbjct: 99  TPLDCVYIAPHAWHQIHATGANEPLGF 125

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 8/137 (5%)

Query: 62  LSEEGNLSNAFGRAVTEGN-VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVI 120
                    A  R +   N         T  +      +  G + P H H   S    ++
Sbjct: 69  SGGLIGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHN-QSALRFIV 127

Query: 121 RGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFV 180
            G      +  +       +  G   L P+   H   N G E V++    +  LP    +
Sbjct: 128 EGKGAFTAVDGERTP----MNEGDFILTPQWRWHDHGNPGDEPVIWLDGLD--LPLVNIL 181

Query: 181 HSSLFNTTPPIPNEVLT 197
                   P     V  
Sbjct: 182 GCGFAEDYPEEQQPVTR 198

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVL 165
           P + H  + +   V+ G    G    D    ++ + AG L  I RG  H   N G   + 
Sbjct: 37  PDNRHRGADQWLFVVDGA---GEAIVDGH--TQALQAGSLIAIERGQAHEIRNTGDTPLK 91

Query: 166 FF 167
             
Sbjct: 92  TV 93

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Length = 125

 Score = 43.3 bits (102), Expect = 5e-06
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 88  NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFL 147
            T            G     H+HP   ++  VI G         + +     + AG + +
Sbjct: 35  ETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG--NGIVT--HLKAGDIAI 90

Query: 148 IPRGLVHFQLNVGKENVLFF 167
              G VH  +N G E  +F 
Sbjct: 91  AKPGQVHGAMNSGPEPFIFV 110

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 9/109 (8%)

Query: 89  TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLI 148
           +  +      L      P H H   +    V+ G  +  ++  D V     ++ G L L 
Sbjct: 100 SPTMWAAIQYLGPRETAPEHRHS-QNAFRFVVEGEGVWTVVNGDPVR----MSRGDLLLT 154

Query: 149 PRGLVHFQLNVGKENVLFFPSFNS----QLPGTQFVHSSLFNTTPPIPN 193
           P    H  +N   + + +    +     Q+    F   S   T    PN
Sbjct: 155 PGWCFHGHMNDTDQPMAWIDGLDIPFSQQMDVGFFEFGSDRVTDYATPN 203

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Length = 190

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 106 PPHLHPRS--SESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN 163
             H H +   +E  + ++G   + + T +       +  G +  +P    H  +N+G E 
Sbjct: 87  KGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEP 146

Query: 164 VLFFPSFNS 172
            +F   + +
Sbjct: 147 FIFLAIYPA 155

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Length = 166

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 14/102 (13%)

Query: 74  RAVTEGNVHEFPGVNTQ--------GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVL 125
            A  E     F  V  Q               ++  GG +    H   +   ++++G   
Sbjct: 27  LAYKEEGSAPFRSVTRQVLFSGNGLTGELRYFEVGPGGHSTLERHQ-HAHGVMILKGR-- 83

Query: 126 VGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167
            G            V    L  IP    H       E + F 
Sbjct: 84  -GHAMVGRAVS--AVAPYDLVTIPGWSWHQFRAPADEALGFL 122

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Length = 156

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 13/86 (15%), Positives = 21/86 (24%), Gaps = 6/86 (6%)

Query: 82  HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVT 141
                           ++  GG +    H     + ++ RG    G            V 
Sbjct: 34  QLLFADPNLACEWRYFEVDEGGYSTLERHA-HVHAVMIHRGH---GQCLVGETIS--DVA 87

Query: 142 AGMLFLIPRGLVHFQLNVGKENVLFF 167
            G L  IP    H       + + F 
Sbjct: 88  QGDLVFIPPMTWHQFRANRGDCLGFL 113

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Length = 107

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVH 154
           + G    H H  S +    + G + V      ++     +  G + ++P+ + H
Sbjct: 36  LLGDYGWHTHGYSDKVLFAVEGDMAVDFADGGSM----TIREGEMAVVPKSVSH 85

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X Length = 79

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 69  SNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGI 128
           SN +G+ + E    +   +    I  N + +  G +  PH + R++   +   G   V +
Sbjct: 14  SNNYGK-LYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVEL 72

Query: 129 ITTDN 133
           +  + 
Sbjct: 73  VGLEQ 77

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Length = 163

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 8/76 (10%)

Query: 95  NRVDLAVGG-INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRG-- 151
           N V L  G   +  H H    E  +V  G     ++  D   +   +  G     P G  
Sbjct: 46  NLVRLEPGAKSSLRHYHMEQDEFVMVTEGA---LVLVDDQGEH--PMVPGDCAAFPAGDP 100

Query: 152 LVHFQLNVGKENVLFF 167
             H  +N       F 
Sbjct: 101 NGHQFVNRTDAPATFL 116

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Length = 239

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 21/130 (16%)

Query: 50  ETEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAV--GGINPP 107
           ETE+ +    FD      L++          + +    + + I        +  GG   P
Sbjct: 3   ETEIHT----FDDIPMPKLADPLLIYTPANEIFDIASCSAKDIGFAIAHAQIPPGGGPMP 58

Query: 108 HLHPRSSESSIVIRGTV---------------LVGIITTDNVFYSKVVTAGMLFLIPRGL 152
           H+H   +E      G +                V         YS       L   P   
Sbjct: 59  HIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHY 118

Query: 153 VHFQLNVGKE 162
           +H  +N   +
Sbjct: 119 MHGFVNPTDK 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	100.0
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	100.0
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	100.0
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	100.0
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	100.0
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	100.0
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.98
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.97
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.97
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.97
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.97
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.97
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.97
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.97
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.95
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.95
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.95
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.95
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.95
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.94
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.94
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.94
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.94
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.94
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.94
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.93
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.93
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.93
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.92
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.88
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.82
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.81
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.81
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.49
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	99.47
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.45
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.44
1v70_A	105	Probable antibiotics synthesis protein; structural	99.43
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.4
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.39
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.37
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.36
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.36
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.34
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.34
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.33
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.31
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.3
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.3
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.28
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.28
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.27
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.26
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.26
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.26
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.25
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.24
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.24
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.23
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.23
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.23
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.22
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.19
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.17
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.15
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.15
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.15
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.13
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.11
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.11
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.1
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.09
1sef_A	274	Conserved hypothetical protein; structural genomic	99.08
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.06
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.03
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.03
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.01
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.99
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.97
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.97
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.97
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.96
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.96
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.96
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.95
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.95
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.92
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.92
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.88
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.86
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.85
1sef_A	274	Conserved hypothetical protein; structural genomic	98.84
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.83
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.82
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.78
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.78
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.76
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.66
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.66
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.6
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	98.57
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.57
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.53
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.52
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.51
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.5
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	98.49
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.43
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.42
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.41
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	98.38
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	98.34
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	98.33
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.21
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.18
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.14
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	98.12
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	98.07
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.04
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	97.82
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.79
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	97.77
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.71
3uss_A	211	Putative uncharacterized protein; cupin, three his	97.69
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.59
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.49
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	97.14
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	97.0
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	96.98
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	96.95
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	96.86
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	96.84
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	96.84
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	96.83
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	96.8
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	96.79
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	96.71
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	96.64
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	96.6
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	96.57
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	96.55
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	96.54
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	96.45
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	96.36
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	96.34
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	95.88
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	95.45
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	95.39
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	95.3
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	95.27
3kv5_D	488	JMJC domain-containing histone demethylation prote	95.17
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	95.16
4diq_A	489	Lysine-specific demethylase NO66; structural genom	94.93
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	94.91
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	94.87
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	94.87
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	94.84
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	94.75
3kv9_A	397	JMJC domain-containing histone demethylation prote	94.51
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	94.31
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	94.2
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	93.85
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	93.84
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	93.71
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	93.34
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	92.79
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	92.44
2rg4_A	216	Uncharacterized protein; rhodobacterales, oceanico	92.43
1xe7_A	203	YML079WP, hypothetical 22.5 kDa protein in TUB1-CP	91.31
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	90.55
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	90.48
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	89.04
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	88.58
1ft9_A	222	Carbon monoxide oxidation system transcription reg	88.39
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	87.77
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	87.4
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	87.24
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	86.63
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	86.58
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	86.45
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	86.07
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	85.81
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	85.51
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	85.25
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	83.54
1znp_A	154	Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0,	81.47

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=100.00  E-value=9e-50  Score=333.93  Aligned_cols=194  Identities=53%  Similarity=0.907  Sum_probs=184.1

Q ss_pred             cCCCCCcceeecCCCCC-ccccCCCCCCCCCccCCCeee-e-ccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEE
Q 040384           23 ADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFF-D-LSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDL   99 (224)
Q Consensus        23 ~d~~~~~d~cva~~~~~-~~~~g~~ck~~~~vt~~df~f-~-l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l   99 (224)
                      +||||||||||||++++ +++||+||| |+.++++||+| + +++++++.+..|+.++.++..++|+++++|+++.++++
T Consensus         1 ~~~~~~~d~c~~~~~~~~~~~~g~~c~-~~~~~~~df~~~~~~~~~~~~~~~~G~~v~~~~~~~~p~l~~~~~~~~~~~l   79 (201)
T 1fi2_A            1 TDPDPLQDFCVADLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDF   79 (201)
T ss_dssp             CCCCCSSSCCCBCCCTTSCCCSSCCBC-CGGGCCSCTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEE
T ss_pred             CCCcccceeEEecCCCCcccccCcccc-cCcccccceEEeeeecCCCCccCCCCcEEEEEecccCCCcccCceEEEEEEE
Confidence            69999999999999988 999999999 99999999999 6 88888888899999999999999999999999999999


Q ss_pred             eCCcccCceecCCCCceEEEEeCeEEEEEEeCC---CeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCc
Q 040384          100 AVGGINPPHLHPRSSESSIVIRGTVLVGIITTD---NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG  176 (224)
Q Consensus       100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~---~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg  176 (224)
                      .||++.+||||+++.|++||++|++++++++.+   ++++.+.|++||++++|+|..|++.|.|++++.++.++++++|+
T Consensus        80 ~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~p~  159 (201)
T 1fi2_A           80 APGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPG  159 (201)
T ss_dssp             CTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCC
T ss_pred             CCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCCC
Confidence            999999999999989999999999999998765   67778999999999999999999999999999999999999999


Q ss_pred             ceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCC
Q 040384          177 TQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSA  217 (224)
Q Consensus       177 ~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~  217 (224)
                      .+.++.++|+++|++++|+|+++|+++++++++|++.+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~vl~~af~~~~~~v~~l~~~~~~~  200 (201)
T 1fi2_A          160 IVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGG  200 (201)
T ss_dssp             CEEHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHSTTC
T ss_pred             eEehhhHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHhhcCC
Confidence            99999999999888999999999999999999999988543

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=100.00  E-value=2e-34  Score=267.35  Aligned_cols=152  Identities=14%  Similarity=0.216  Sum_probs=141.8

Q ss_pred             CCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEEEEEECCC
Q 040384           65 EGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFYSKVVTAG  143 (224)
Q Consensus        65 ~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~~~~l~~G  143 (224)
                      .++..++.||+++.+++.+||+|+++|||+++++|.||||++|||||+|+||+||++|+++++++++++ +++..+|++|
T Consensus       296 ~~d~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~G  375 (466)
T 3kgl_A          296 NADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQG  375 (466)
T ss_dssp             GEEEEETTTEEEEEECTTTCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETT
T ss_pred             cCCcccCCCceEEEechhhCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCC
Confidence            445568889999999999999999999999999999999999999999999999999999999999874 6789999999


Q ss_pred             CEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcce
Q 040384          144 MLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLG  220 (224)
Q Consensus       144 Dv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i  220 (224)
                      ||++||+|++|++ |.|++++.+++++++++|+.+.++  .++|++   +|++||+++|+++.+++++|++.+.+..|+
T Consensus       376 DV~v~P~G~~H~~-~ag~e~~~~l~~f~s~np~~~~LaG~~s~~~~---lP~eVla~aF~v~~~~v~~Lk~~q~e~~i~  450 (466)
T 3kgl_A          376 QLLSIPQGFSVVK-RATSEQFRWIEFKTNANAQINTLAGRTSVLRG---LPLEVISNGYQISLEEARRVKFNTIETTLT  450 (466)
T ss_dssp             CEEEECTTCEEEE-EECSSEEEEEEEESSSSCCEEESSSTTCTGGG---SCHHHHHHHHTCCHHHHHHHHHSCCCSSEE
T ss_pred             cEEEECCCCeEEE-EcCCCCEEEEEEECCCCCccccccchhhhhhh---CCHHHHHHHhCcCHHHHHHHHhccCccEEE
Confidence            9999999999998 789999999999999999999987  578887   999999999999999999999999887554

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=100.00  E-value=1.7e-33  Score=262.82  Aligned_cols=160  Identities=13%  Similarity=0.206  Sum_probs=143.5

Q ss_pred             eeecc--CCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC-CeE
Q 040384           59 FFDLS--EEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVF  135 (224)
Q Consensus        59 ~f~l~--~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~  135 (224)
                      .+++.  ..++..++.||+++.+++.+||+|+++|||+++++|.||||++|||||+|+||+||++|+++++|++++ +++
T Consensus       323 ~~Ni~~p~~~di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~  402 (496)
T 3ksc_A          323 RLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTV  402 (496)
T ss_dssp             EEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEE
T ss_pred             hccccccccCCcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEE
Confidence            45444  335566888999999999999999999999999999999999999999999999999999999999986 467


Q ss_pred             EEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhc
Q 040384          136 YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAA  213 (224)
Q Consensus       136 ~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~evla~af~v~~~~v~~l~~~  213 (224)
                      +.++|++|||++||+|++|++.|. ++++.+++++++++|+.+.++  .++|++   +|++||+++|+++.+++++|++.
T Consensus       403 f~~~l~~GDV~v~P~G~~H~~~a~-~e~~~~l~f~~s~np~~~~LaG~~sv~~~---~p~eVLa~aF~v~~~~v~~Lk~~  478 (496)
T 3ksc_A          403 FDGELEAGRALTVPQNYAVAAKSL-SDRFSYVAFKTNDRAGIARLAGTSSVINN---LPLDVVAATFNLQRNEARQLKSN  478 (496)
T ss_dssp             EEEEEETTCEEEECTTCEEEEEEC-SSEEEEEEEESSTTCCEEESSSTTCTTTT---SCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             EEEEecCCeEEEECCCCEEEEEeC-CCCEEEEEEECCCCCccccccchhhhhhh---CCHHHHHHHHCcCHHHHHHHHhc
Confidence            889999999999999999998765 778999999999999999887  578886   99999999999999999999999


Q ss_pred             cCCCcceecC
Q 040384          214 ITSAQLGHRP  223 (224)
Q Consensus       214 ~~~~~~i~r~  223 (224)
                      +.+. .|+++
T Consensus       479 q~e~-~i~~~  487 (496)
T 3ksc_A          479 NPFK-FLVPA  487 (496)
T ss_dssp             CCCS-SEECC
T ss_pred             CCcc-EEeCC
Confidence            8886 55554

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=100.00  E-value=1.1e-33  Score=262.40  Aligned_cols=153  Identities=14%  Similarity=0.204  Sum_probs=142.1

Q ss_pred             CCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC-CeEEEEEECC
Q 040384           64 EEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSKVVTA  142 (224)
Q Consensus        64 ~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~~~~~l~~  142 (224)
                      ..+++.++.||+++.+++.+||+|+++|+|+++++|.||||++|||||+|+||+||++|+++++|++++ ++++.++|++
T Consensus       295 ~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~  374 (465)
T 3qac_A          295 SKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSR  374 (465)
T ss_dssp             TTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecC
Confidence            345667889999999999999999999999999999999999999999999999999999999999986 4788999999


Q ss_pred             CCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcce
Q 040384          143 GMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLG  220 (224)
Q Consensus       143 GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i  220 (224)
                      |||++||+|++|++. .|++++.+++++++++|+.+.++  .++|++   +|++||+++|+++.+++++|++++.+..|+
T Consensus       375 GDVfvvP~g~~h~~~-ag~e~~~~l~f~~s~np~~~~LaG~~sv~~~---ip~eVla~aF~v~~e~v~~Lk~~~~e~~i~  450 (465)
T 3qac_A          375 GQLVVVPQNFAIVKQ-AFEDGFEWVSFKTSENAMFQSLAGRTSAIRS---LPIDVVSNIYQISREEAFGLKFNRPETTLF  450 (465)
T ss_dssp             TCEEEECTTCEEEEE-EEEEEEEEEEEESSTTCCEEESSSSSBHHHH---SCHHHHHHHHTCCHHHHHHHHHSCCSCSEE
T ss_pred             CeEEEECCCcEEEEE-cCCCCeEEEEEecCCCCcccccccchhhhhh---CCHHHHHHHhCCCHHHHHHHHhccCccEEE
Confidence            999999999999985 67889999999999999999987  688886   999999999999999999999999888554

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=100.00  E-value=8.8e-33  Score=256.72  Aligned_cols=155  Identities=18%  Similarity=0.270  Sum_probs=142.9

Q ss_pred             CCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC-CeEEEEEECC
Q 040384           64 EEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSKVVTA  142 (224)
Q Consensus        64 ~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~~~~~l~~  142 (224)
                      ..+++.+..||+++.+++.+||+|+++|+|+++++|.|||+++|||||+|+||.||++|++++++++++ ++++..+|++
T Consensus       294 ~~~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~  373 (459)
T 2e9q_A          294 ERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVRE  373 (459)
T ss_dssp             SCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeC
Confidence            445556889999999999999999999999999999999999999999999999999999999999976 4677789999


Q ss_pred             CCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcce
Q 040384          143 GMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLG  220 (224)
Q Consensus       143 GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i  220 (224)
                      ||+++||+|++|++.| |++++.+++++++++|+.+.++  .++|++   +|++||+++|+++.+++++|++.+.+.. |
T Consensus       374 GDv~v~P~G~~H~~~n-g~~~~~~l~~~~s~~~~~~~laG~~s~~~~---~p~~Vla~af~v~~~~v~~l~~~~~e~~-i  448 (459)
T 2e9q_A          374 GQVLMIPQNFVVIKRA-SDRGFEWIAFKTNDNAITNLLAGRVSQMRM---LPLGVLSNMYRISREEAQRLKYGQQEMR-V  448 (459)
T ss_dssp             TCEEEECTTCEEEEEE-EEEEEEEEEEESSSSCCEEESSSSSSHHHH---SCHHHHHHHHTCCHHHHHHHHHSCCSCS-E
T ss_pred             CcEEEECCCCEEEEEe-CCCCeEEEEEecCCCCcceeecchhHHHHh---CCHHHHHHHHCcCHHHHHHHHhcCCccE-E
Confidence            9999999999999999 7888999999999999999997  778887   9999999999999999999999987774 6


Q ss_pred             ecC
Q 040384          221 HRP  223 (224)
Q Consensus       221 ~r~  223 (224)
                      ++|
T Consensus       449 ~~~  451 (459)
T 2e9q_A          449 LSP  451 (459)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            655

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=100.00  E-value=6.3e-33  Score=259.40  Aligned_cols=161  Identities=19%  Similarity=0.290  Sum_probs=142.7

Q ss_pred             eeecc--CCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eE
Q 040384           59 FFDLS--EEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VF  135 (224)
Q Consensus        59 ~f~l~--~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~  135 (224)
                      .|++.  ..+++.++.||+++.+++.+||+|+++|||+++++|.|||+++|||||+|+||+||++|++++++++++| ++
T Consensus       359 ~~Ni~~ps~~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v  438 (531)
T 3fz3_A          359 KENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAI  438 (531)
T ss_dssp             EEECCCGGGCSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEE
T ss_pred             eeccCCcccCCcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEE
Confidence            56544  3456778999999999999999999999999999999999999999999999999999999999999864 67


Q ss_pred             EEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhc
Q 040384          136 YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAA  213 (224)
Q Consensus       136 ~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~evla~af~v~~~~v~~l~~~  213 (224)
                      ++.+|++||+++||+|++|+.. .|++.+.++++.++++|++..++  .++|++   +|++||+++|+++.+++++|++.
T Consensus       439 ~~~~L~~GDV~v~P~G~~H~~~-ag~e~l~flaF~ss~np~~~~LaG~~svf~~---lP~eVLa~aF~v~~e~v~kLk~~  514 (531)
T 3fz3_A          439 LDQEVQQGQLFIVPQNHGVIQQ-AGNQGFEYFAFKTEENAFINTLAGRTSFLRA---LPDEVLANAYQISREQARQLKYN  514 (531)
T ss_dssp             EEEEEETTCEEEECTTCEEEEE-EEEEEEEEEEEESSTTCCEEESSSTTCHHHH---SCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             EEEEecCCeEEEECCCCeEEEe-cCCCCEEEEEEecCCCCcceeccchhHHHHh---CCHHHHHHHhCcCHHHHHHHHhc
Confidence            8999999999999999999875 56666666655556899999887  788897   99999999999999999999999


Q ss_pred             cCCCcceecC
Q 040384          214 ITSAQLGHRP  223 (224)
Q Consensus       214 ~~~~~~i~r~  223 (224)
                      +.+..|+.+|
T Consensus       515 ~~es~i~~pp  524 (531)
T 3fz3_A          515 RQETIALSSS  524 (531)
T ss_dssp             CCCSSEECC-
T ss_pred             CCCceEECCC
Confidence            9998777665

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.98  E-value=4.6e-32  Score=251.23  Aligned_cols=163  Identities=15%  Similarity=0.195  Sum_probs=139.4

Q ss_pred             cCCCeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC
Q 040384           54 TSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN  133 (224)
Q Consensus        54 t~~df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~  133 (224)
                      ....++|.|....+..+..||+++.+++.+||+|+++|+++++++|.||||++|||||+|+||+||++|+++++++++++
T Consensus       243 ~~~~~~~~l~~~~p~~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~  322 (445)
T 2cav_A          243 SSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQ  322 (445)
T ss_dssp             ---CCCEETTSSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC--
T ss_pred             CCcccceeccccCCCccCCCceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCC
Confidence            34567786544434346778899999999999999999999999999999999999999999999999999999999863


Q ss_pred             ---------e--EEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe-eCCCCcceehh---hhhhcCCCCCCHHHHHh
Q 040384          134 ---------V--FYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF-NSQLPGTQFVH---SSLFNTTPPIPNEVLTK  198 (224)
Q Consensus       134 ---------~--~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~-~s~~pg~~~~~---~~lf~~~p~~p~evla~  198 (224)
                               +  +++.+|++|||++||+|++|++.|.  +++.++++. ++++|+.+.++   .++|++   +|++||++
T Consensus       323 ~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~~---~p~~vla~  397 (445)
T 2cav_A          323 QQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA--SDLNMVGIGVNAENNERNFLAGHKENVIRQ---IPRQVSDL  397 (445)
T ss_dssp             ---------CCEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEESCTTCCEEESSSSTTBSGGG---SCHHHHHH
T ss_pred             cccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC--CCeEEEEEEccCCCCCcEEcccchhhhhhh---CCHHHHHH
Confidence                     3  6899999999999999999999998  357777655 45689999887   689997   99999999


Q ss_pred             hcCCCHHHHHHHHhccCCCccee
Q 040384          199 TFLVGDEVINAIKAAITSAQLGH  221 (224)
Q Consensus       199 af~v~~~~v~~l~~~~~~~~~i~  221 (224)
                      +|+++.+++++|++.+.++.++-
T Consensus       398 af~v~~~~v~~l~~~~~e~~~~~  420 (445)
T 2cav_A          398 TFPGSGEEVEELLENQKESYFVD  420 (445)
T ss_dssp             HSSSCHHHHHHHHHHCCSCSEEE
T ss_pred             HHCcCHHHHHHHHhcCCccEEeC
Confidence            99999999999999998886543

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.97  E-value=1.1e-31  Score=246.93  Aligned_cols=162  Identities=14%  Similarity=0.178  Sum_probs=141.7

Q ss_pred             cCCCeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC
Q 040384           54 TSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN  133 (224)
Q Consensus        54 t~~df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~  133 (224)
                      ....+.|.|....+..+..+|+++.+++.+||+|+++|+++++++|.|||+++|||||+|+||.||++|+++++++++++
T Consensus       211 ~~~~~~~~l~~~~p~~~~~~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g  290 (416)
T 1uij_A          211 SSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKE  290 (416)
T ss_dssp             GCSSSCEETTSSCCSEECSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC-
T ss_pred             CCcccceeccccCCCccCCCceEEEEChHHCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCC
Confidence            35667885544433335566689999999999999999999999999999999999999999999999999999999876


Q ss_pred             --------------eEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeC-CCCcceehh---hhhhcCCCCCCHHH
Q 040384          134 --------------VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNS-QLPGTQFVH---SSLFNTTPPIPNEV  195 (224)
Q Consensus       134 --------------~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s-~~pg~~~~~---~~lf~~~p~~p~ev  195 (224)
                                    +.+..+|++||+++||+|++||+.|.  +++.+++++++ ++|+.+.++   .++|++   +|++|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~l~f~~~~~~~~~~~laG~~~sv~~~---~p~~v  365 (416)
T 1uij_A          291 QQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQ---IERQV  365 (416)
T ss_dssp             -----------CCEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBSGGG---SCHHH
T ss_pred             ccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEEcCCCCCcceecccchhhHHHh---CCHHH
Confidence                          47788999999999999999999998  57888888865 499999887   688997   99999


Q ss_pred             HHhhcCCCHHHHHHHHhccCCCcce
Q 040384          196 LTKTFLVGDEVINAIKAAITSAQLG  220 (224)
Q Consensus       196 la~af~v~~~~v~~l~~~~~~~~~i  220 (224)
                      |+++|+++++++++|++.+.+..|+
T Consensus       366 la~af~~~~~~v~~l~~~~~~~~~~  390 (416)
T 1uij_A          366 QELAFPGSAQDVERLLKKQRESYFV  390 (416)
T ss_dssp             HHHHSSSCHHHHHHHTTSCCSCSEE
T ss_pred             HHHHHCcCHHHHHHHHhcCCccEEE
Confidence            9999999999999999998877544

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.97  E-value=5.2e-31  Score=243.55  Aligned_cols=163  Identities=16%  Similarity=0.228  Sum_probs=141.8

Q ss_pred             ccCCCeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC
Q 040384           53 VTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD  132 (224)
Q Consensus        53 vt~~df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~  132 (224)
                      .....+.|.|....+..+..||+++++++.+||+|+++|+++++++|.||||++|||||+|+||.||++|++++++++++
T Consensus       227 ~~~~~~~~~l~~~~p~~~~~gG~v~~~~~~~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~  306 (434)
T 2ea7_A          227 LSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLS  306 (434)
T ss_dssp             TTCSSSCEETTSSCCSEEETTEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEE
T ss_pred             CCCcccceeeccCCCceeCCCcEEEEEChhhCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecC
Confidence            34556778655444434567889999999999999999999999999999999999999999999999999999999885


Q ss_pred             C-------------eEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEee-CCCCcceehh---hhhhcCCCCCCHHH
Q 040384          133 N-------------VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN-SQLPGTQFVH---SSLFNTTPPIPNEV  195 (224)
Q Consensus       133 ~-------------~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~-s~~pg~~~~~---~~lf~~~p~~p~ev  195 (224)
                      +             +.+..+|++||+++||+|++||+.|.  +++.+++++. +++++.+.++   .++|++   +|++|
T Consensus       307 g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~~---~p~~v  381 (434)
T 2ea7_A          307 DQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINAT--SNLNFFAFGINAENNRRNFLAGGKDNVMSE---IPTEV  381 (434)
T ss_dssp             ECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBGGGG---SCHHH
T ss_pred             ccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEECCCCCCCceecccchhhhhhh---CCHHH
Confidence            4             36778999999999999999999998  4688887764 4589999888   688997   99999


Q ss_pred             HHhhcCCCHHHHHHHHhccCCCcce
Q 040384          196 LTKTFLVGDEVINAIKAAITSAQLG  220 (224)
Q Consensus       196 la~af~v~~~~v~~l~~~~~~~~~i  220 (224)
                      |+++|+++.+++++|++.+.+..|+
T Consensus       382 la~af~v~~~~v~~l~~~~~e~~~~  406 (434)
T 2ea7_A          382 LEVSFPASGKKVEKLIKKQSESHFV  406 (434)
T ss_dssp             HHHHSSSCHHHHHHHHTTCCSCSEE
T ss_pred             HHHHHCcCHHHHHHHHhcCCccEEE
Confidence            9999999999999999998877544

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.97  E-value=2.9e-31  Score=243.98  Aligned_cols=159  Identities=13%  Similarity=0.149  Sum_probs=137.9

Q ss_pred             CCeeee-ccCCCcccCCCCceEEEeecccC-CCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC
Q 040384           56 DDFFFD-LSEEGNLSNAFGRAVTEGNVHEF-PGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN  133 (224)
Q Consensus        56 ~df~f~-l~~~~~~~~~~g~~~~~~~~~~~-P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~  133 (224)
                      ..++|+ +.+.+.++ ..+|+++.+++.+| |+|+++|+++++++|.||||++|||||+|+||+||++|+++++++++++
T Consensus       226 ~~~~~nl~~~~p~~~-n~~G~~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~  304 (418)
T 3s7i_A          226 ITNPINLREGEPDLS-NNFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRK  304 (418)
T ss_dssp             CCCCEETTCSCCSEE-ETTEEEEEECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEE
T ss_pred             CCcccccccCCCcee-CCCCeEEEechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCC
Confidence            367785 44445544 55667999999999 9999999999999999999999999999999999999999999998765


Q ss_pred             -------------------------eEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe-eCCCCcceehhh---hh
Q 040384          134 -------------------------VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF-NSQLPGTQFVHS---SL  184 (224)
Q Consensus       134 -------------------------~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~-~s~~pg~~~~~~---~l  184 (224)
                                               +.+..+|++|||++||+|++||+.|.+  ++.++++. ++++|+.+.++.   ++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--~l~~v~f~~~~~~~~~~~LAG~~~sv  382 (418)
T 3s7i_A          305 EQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS--ELHLLGFGINAENNHRIFLAGDKDNV  382 (418)
T ss_dssp             C-------------------CCEEEEEEEEEECTTCEEEECTTCCEEEEESS--CEEEEEEEESCTTCCEEESSSSTTBH
T ss_pred             ccccccccccccccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCC--CEEEEEEEcCCCCCcceEccCchhhh
Confidence                                     567899999999999999999998864  46666654 456899999885   68


Q ss_pred             hcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcce
Q 040384          185 FNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLG  220 (224)
Q Consensus       185 f~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i  220 (224)
                      |++   +|++||++||+++.+++++|++++++..++
T Consensus       383 ~~~---~~~evla~af~v~~~~v~~L~~~q~e~~~~  415 (418)
T 3s7i_A          383 IDQ---IEKQAKDLAFPGSGEQVEKLIKNQKESHFV  415 (418)
T ss_dssp             HHH---SCHHHHHHHSSSCHHHHHHHHHTCCSCSEE
T ss_pred             hhc---CCHHHHHHHhCCCHHHHHHHHhcCCcceee
Confidence            887   999999999999999999999999988543

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.97  E-value=2e-30  Score=243.07  Aligned_cols=155  Identities=14%  Similarity=0.244  Sum_probs=142.1

Q ss_pred             CCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEEEEEECC
Q 040384           64 EEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFYSKVVTA  142 (224)
Q Consensus        64 ~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~~~~l~~  142 (224)
                      ..+++.+..|++++.+++.+||+|+++++++++++|.||++.+|||||+++|++||++|++++++++++| +++..+|++
T Consensus       344 ~~~~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~  423 (510)
T 3c3v_A          344 RSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQE  423 (510)
T ss_dssp             SCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcC
Confidence            3456678899999999999999999999999999999999999999999999999999999999998864 677888999


Q ss_pred             CCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcce
Q 040384          143 GMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLG  220 (224)
Q Consensus       143 GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i  220 (224)
                      ||+++||+|++|++.| |++++.+++++.+.+|+...++  .++|++   +|++||+++|+++.+++++|++.+.+. .|
T Consensus       424 GDv~viP~G~~H~~~N-g~e~l~~l~f~~s~~p~~~~LaG~~svf~~---lp~eVla~aF~v~~e~v~~L~~~~~e~-~i  498 (510)
T 3c3v_A          424 GHVLVVPQNFAVAGKS-QSDNFEYVAFKTDSRPSIANLAGENSVIDN---LPEEVVANSYGLPREQARQLKNNNPFK-FF  498 (510)
T ss_dssp             TCEEEECTTCEEEEEE-CSSEEEEEEEESSSSCCEEESSSTTSTTTT---SCHHHHHHHHTCCHHHHHHHHHSCCCS-SE
T ss_pred             CcEEEECCCCeEEEEe-CCCCEEEEEEECCCCcceeecccHhHHHHh---CCHHHHHHHHCcCHHHHHHHHhhCCCc-EE
Confidence            9999999999999999 8888888888878899999997  788997   999999999999999999999998775 56


Q ss_pred             ecC
Q 040384          221 HRP  223 (224)
Q Consensus       221 ~r~  223 (224)
                      ++|
T Consensus       499 ~~p  501 (510)
T 3c3v_A          499 VPP  501 (510)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            665

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.97  E-value=4.3e-30  Score=239.64  Aligned_cols=155  Identities=17%  Similarity=0.281  Sum_probs=141.8

Q ss_pred             CCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEEEEEECC
Q 040384           64 EEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFYSKVVTA  142 (224)
Q Consensus        64 ~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~~~~l~~  142 (224)
                      ..+++.+..||+++.+++.+||+|+++++++++++|.||++++|||||+++|++||++|++++++++++| +.+..+|++
T Consensus       310 ~~~~~~~~~gG~v~~~~~~~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~  389 (476)
T 1fxz_A          310 SSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQE  389 (476)
T ss_dssp             SCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeEEEEeccccCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcC
Confidence            3455668899999999999999999999999999999999999999999999999999999999998764 667788999


Q ss_pred             CCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcce
Q 040384          143 GMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLG  220 (224)
Q Consensus       143 GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i  220 (224)
                      ||+++||+|++|++.| |++.+.+++++++++|+...++  .++|++   +|++||+++|+++++++++|++.+.+.. |
T Consensus       390 GDv~viP~G~~H~~~n-g~~~l~~l~f~~s~~p~~~~laG~~s~~~~---~p~~Vla~af~~~~~~v~~l~~~~~e~~-i  464 (476)
T 1fxz_A          390 GRVLIVPQNFVVAARS-QSDNFEYVSFKTNDTPMIGTLAGANSLLNA---LPEEVIQHTFNLKSQQARQIKNNNPFKF-L  464 (476)
T ss_dssp             TCEEEECTTCEEEEEE-CSTTEEEEEEESSSSCCEEESSSTTCTGGG---SCHHHHHHHHTCCHHHHHHHHHSCCCSS-E
T ss_pred             CCEEEECCCCeEEEEe-CCCCEEEEEEECCCCCceeEccchhHHHHh---CCHHHHHHHhCcCHHHHHHHHhhCCCcE-E
Confidence            9999999999999999 8888888888878899999987  788997   9999999999999999999999987764 5


Q ss_pred             ecC
Q 040384          221 HRP  223 (224)
Q Consensus       221 ~r~  223 (224)
                      ++|
T Consensus       465 ~~p  467 (476)
T 1fxz_A          465 VPP  467 (476)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            555

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.97  E-value=8.5e-30  Score=209.29  Aligned_cols=159  Identities=13%  Similarity=0.153  Sum_probs=132.8

Q ss_pred             CeeeeccCCCcccCCCCceEEEeec-----ccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeC
Q 040384           57 DFFFDLSEEGNLSNAFGRAVTEGNV-----HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITT  131 (224)
Q Consensus        57 df~f~l~~~~~~~~~~g~~~~~~~~-----~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~  131 (224)
                      .|+|.+.+..+.....||+++.++.     ..+|+++  ++++.+++++||++.+|| |++++|++||++|+++++++++
T Consensus         3 p~~f~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~   79 (178)
T 1dgw_A            3 PYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLR--DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNP   79 (178)
T ss_dssp             TTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGT--TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEET
T ss_pred             CceechhhcccceEcCCCEEEEEcccCCcchhcCCcC--cEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeC
Confidence            4777655543434678999999877     6678777  699999999999999999 8899999999999999999987


Q ss_pred             CCeEEEEEECCCCEEEecCCCeeEEEecCCc-cEEEEEEe-eCCCCcce---ehh-----hhhhcCCCCCCHHHHHhhcC
Q 040384          132 DNVFYSKVVTAGMLFLIPRGLVHFQLNVGKE-NVLFFPSF-NSQLPGTQ---FVH-----SSLFNTTPPIPNEVLTKTFL  201 (224)
Q Consensus       132 ~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~-~a~~~~~~-~s~~pg~~---~~~-----~~lf~~~p~~p~evla~af~  201 (224)
                      ++. ..+.|++||++++|+|..||++|.|++ +++++.++ .+++|+.+   .++     .++|++   +|+|||+++|+
T Consensus        80 ~~~-~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~~~~~~~~~---~p~~vla~af~  155 (178)
T 1dgw_A           80 DGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSA---FSKNFLEASYD  155 (178)
T ss_dssp             TEE-EEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGG---SCHHHHHHHHT
T ss_pred             CCc-EEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCcCcchhhhh---CCHHHHHHHHC
Confidence            653 478999999999999999999999986 67777664 45677743   332     578887   99999999999


Q ss_pred             CCHHHHHHHHhccCCCcceec
Q 040384          202 VGDEVINAIKAAITSAQLGHR  222 (224)
Q Consensus       202 v~~~~v~~l~~~~~~~~~i~r  222 (224)
                      ++++++++|+....+++.|+|
T Consensus       156 v~~~~~~~l~~~~~~~~~iv~  176 (178)
T 1dgw_A          156 SPYDEIEQTLLQEEQEGVIVK  176 (178)
T ss_dssp             SCHHHHHHHTTSCCSSSSEEE
T ss_pred             cCHHHHHHHhcCcCcCceEEE
Confidence            999999999977667778876

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.95  E-value=3e-28  Score=222.62  Aligned_cols=150  Identities=15%  Similarity=0.146  Sum_probs=126.7

Q ss_pred             eeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeC------C-
Q 040384           60 FDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITT------D-  132 (224)
Q Consensus        60 f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~------~-  132 (224)
                      +++....+..+..+|+++++++.+      +++++++++|.|||+.+|||||+|+||.||++|+++++++++      + 
T Consensus       213 ~~l~~~~p~~~n~~G~~~~v~~~~------l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g  286 (397)
T 2phl_A          213 KSLSKQDNTIGNEFGNLTERTDNS------LNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLE  286 (397)
T ss_dssp             -------CEEEETTEEEEEEEETT------TTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSC
T ss_pred             ccccccCCcccCCCCeEEEEeecc------CCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCC
Confidence            344444343456677799999988      799999999999999999999999999999999999999997      4 


Q ss_pred             CeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEee-CCCCcceehh---hhhhcCCCCCC-----HHHHHhhcCCC
Q 040384          133 NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN-SQLPGTQFVH---SSLFNTTPPIP-----NEVLTKTFLVG  203 (224)
Q Consensus       133 ~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~-s~~pg~~~~~---~~lf~~~p~~p-----~evla~af~v~  203 (224)
                      +++++.+|++||+++||+|++||++|.+  ++.++++.. +++|+.+.++   .++|++   +|     ++||+++|+++
T Consensus       287 ~~~~~~~l~~GDV~vvP~G~~h~~~n~~--~l~~l~f~~~s~~~~~~~laG~~~sv~~~---~p~~~~~~eVla~af~v~  361 (397)
T 2phl_A          287 YESYRAELSKDDVFVIPAAYPVAIKATS--NVNFTGFGINANNNNRNLLAGKTDNVISS---IGRALDGKDVLGLTFSGS  361 (397)
T ss_dssp             EEEEEEEEETTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSSSBHHHH---HHTSTTHHHHHHHHSSSC
T ss_pred             ceEEEEEecCCCEEEECCCCeEEEEeCC--CeEEEEEECCCCCCcceecccchhhHHhh---CCCccchHHHHHHHhCcC
Confidence            4889999999999999999999999986  678777655 4589998887   788987   66     99999999999


Q ss_pred             HHHHHHHHhccCCCcce
Q 040384          204 DEVINAIKAAITSAQLG  220 (224)
Q Consensus       204 ~~~v~~l~~~~~~~~~i  220 (224)
                      ++++++|++.+.+..|+
T Consensus       362 ~~~v~~l~~~~~e~~i~  378 (397)
T 2phl_A          362 GDEVMKLINKQSGSYFV  378 (397)
T ss_dssp             HHHHHHHHTTCCCCSEE
T ss_pred             HHHHHHHHhcCCccEEe
Confidence            99999999998777443

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.95  E-value=2.8e-28  Score=226.43  Aligned_cols=148  Identities=16%  Similarity=0.269  Sum_probs=129.0

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EE------------
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FY------------  136 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~------------  136 (224)
                      ...+| .++++..+.|+|+++|++++|++|+|||+++|||| +++|++||++|++++++++++++ .+            
T Consensus        42 ~se~G-~~~~~~~~~~~l~~~gvs~~r~~i~pggl~~Ph~h-~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~  119 (459)
T 2e9q_A           42 EAEAG-FTEVWDQDNDEFQCAGVNMIRHTIRPKGLLLPGFS-NAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGS  119 (459)
T ss_dssp             EETTE-EEEECCTTSHHHHHHTEEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEECCTTCCCCEEECCC-------
T ss_pred             ecCCc-EEEecCCCChhhccCceEEEEEEEcCCCEecceec-CCceEEEEEeeEEEEEEEeCCCcchhccchhhcccccc
Confidence            34566 45667788899999999999999999999999999 59999999999999999988652 11            


Q ss_pred             --------EEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCC--------Ccceehh-------------------
Q 040384          137 --------SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQL--------PGTQFVH-------------------  181 (224)
Q Consensus       137 --------~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~--------pg~~~~~-------------------  181 (224)
                              .++|++||+++||+|++||++|.|++++++++++++.|        +..+.++                   
T Consensus       120 ~~~d~~q~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~  199 (459)
T 2e9q_A          120 AFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWERSSRK  199 (459)
T ss_dssp             CCCEEECCCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSSTTCC-------
T ss_pred             ccccccceeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCccccchhhhcccccccc
Confidence                    46999999999999999999999999999999998655        3344444                   


Q ss_pred             -------hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384          182 -------SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR  222 (224)
Q Consensus       182 -------~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r  222 (224)
                             .++|++   |++++|++||+++.++++||++.+.+++.|+|
T Consensus       200 ~~~~~~~~nif~g---f~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~  244 (459)
T 2e9q_A          200 GSSGEKSGNIFSG---FADEFLEEAFQIDGGLVRKLKGEDDERDRIVQ  244 (459)
T ss_dssp             -----CCCCTTTT---SCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEE
T ss_pred             ccccccccchhhc---CCHHHHHhhcCCCHHHHHhhhhcccCCccEEE
Confidence                   379997   99999999999999999999999998888886

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.95  E-value=8.5e-28  Score=224.45  Aligned_cols=148  Identities=12%  Similarity=0.228  Sum_probs=128.6

Q ss_pred             CCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEE-------------
Q 040384           71 AFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFY-------------  136 (224)
Q Consensus        71 ~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~-------------  136 (224)
                      ..|| +++++..++|+|+++|++++|++|+|||+++|||| +|+|++||++|++.+|++.+++ +.+             
T Consensus        26 se~G-~~e~~~~~~~~L~~~gvs~~R~~i~pggl~lPh~~-~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~  103 (496)
T 3ksc_A           26 SEGG-LIETWNPNNKQFRCAGVALSRATLQRNALRRPYYS-NAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRR  103 (496)
T ss_dssp             ETTE-EEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC--------------
T ss_pred             CCCc-EEEeccccchhhccCCceEEEEEecCCCEeCceEc-CCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccc
Confidence            4556 67778899999999999999999999999999999 9999999999999999999862 323             


Q ss_pred             -------EEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCc--------ceehh--------------------
Q 040384          137 -------SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG--------TQFVH--------------------  181 (224)
Q Consensus       137 -------~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg--------~~~~~--------------------  181 (224)
                             .++|++||||+||+|++||++|.|+++++++++|+..++.        .+.++                    
T Consensus       104 ~~d~~qk~~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~~~~~~~~~~~~~  183 (496)
T 3ksc_A          104 YRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQEQ  183 (496)
T ss_dssp             -CCCCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTGGGCC--------
T ss_pred             cccchheeeccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCcccccCCCceeeeEecCCCccccccccccccccccc
Confidence                   3599999999999999999999999999999999866543        23332                    


Q ss_pred             ----hhhhcCCCCCCHHHHHhhcCCCHHHHHHHH--hccCCCcceecC
Q 040384          182 ----SSLFNTTPPIPNEVLTKTFLVGDEVINAIK--AAITSAQLGHRP  223 (224)
Q Consensus       182 ----~~lf~~~p~~p~evla~af~v~~~~v~~l~--~~~~~~~~i~r~  223 (224)
                          .++|++   |+.++|+.||+++.++++||+  +..+.++.|||-
T Consensus       184 ~~~~~ni~sg---F~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~v  228 (496)
T 3ksc_A          184 ENEGNNIFSG---FKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKV  228 (496)
T ss_dssp             ---CCSGGGG---SCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEEC
T ss_pred             cccCCCchhh---cCHHHHHHHHCCCHHHHHHHHhhcccccCccEEEe
Confidence                479997   999999999999999999999  677778888863

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.95  E-value=8.8e-28  Score=222.83  Aligned_cols=149  Identities=17%  Similarity=0.279  Sum_probs=128.7

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEE------------
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFY------------  136 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~------------  136 (224)
                      ...||.+..++ .+.+.|+++|++++|++++|||+.+|||| +++|++||++|++++|++.+++ +.|            
T Consensus        29 ~se~G~~e~~d-~~~~~l~~~gvs~~R~~i~P~gl~~Ph~h-~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~  106 (465)
T 3qac_A           29 QAERGLTEVWD-SNEQEFRCAGVSVIRRTIEPHGLLLPSFT-SAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGED  106 (465)
T ss_dssp             EETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCC------------
T ss_pred             eCCCcEEEEEC-CCChhhcccceEEEEEEEcCCcCcccEEc-CCCEEEEEEECcEEEEEecCCCCceeecchhccccccc
Confidence            34677555554 56689999999999999999999999999 9999999999999999998753 222            


Q ss_pred             ------------------------EEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCC---------Ccceehh--
Q 040384          137 ------------------------SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQL---------PGTQFVH--  181 (224)
Q Consensus       137 ------------------------~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~---------pg~~~~~--  181 (224)
                                              .+++++||++++|+|++||++|+|++++++++++++.|         +..+.++  
T Consensus       107 ~~~~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nqld~~~~r~F~LaG~  186 (465)
T 3qac_A          107 ERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGK  186 (465)
T ss_dssp             ------------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCSCSSSCCEEESSSC
T ss_pred             cccccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCcccccccccceeEEecCC
Confidence                                    45899999999999999999999999999999998654         3445554  


Q ss_pred             ----------------------hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceecC
Q 040384          182 ----------------------SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP  223 (224)
Q Consensus       182 ----------------------~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r~  223 (224)
                                            .++|++   |++++|++||+++.++++||++.+++++.|+|-
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~ni~sg---F~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv  247 (465)
T 3qac_A          187 PQQEHSGEHQFSRESRRGERNTGNIFRG---FETRLLAESFGVSEEIAQKLQAEQDDRGNIVRV  247 (465)
T ss_dssp             CCCSCC--------------CCCCGGGG---SCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC
T ss_pred             Cccccccccccccccccccccccchhhc---CCHHHHHHHhCCCHHHHHHhhhccccceeEEEe
Confidence                                  369997   999999999999999999999999888888863

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.95  E-value=2.1e-27  Score=221.54  Aligned_cols=148  Identities=14%  Similarity=0.187  Sum_probs=125.4

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE--------------
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF--------------  135 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~--------------  135 (224)
                      ...+| .++++..+.|+|+++|++++|++|+|||+++||||+ ++|++||++|++++++++++++.              
T Consensus        27 ~se~G-~~e~~~~~~~~l~~~gvs~~r~~l~Pggl~~Ph~~~-a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~  104 (476)
T 1fxz_A           27 ESEGG-LIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTN-GPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQS  104 (476)
T ss_dssp             EETTE-EEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEES-SCEEEEEEECCEEEEEECTTCCCC-------------
T ss_pred             ecCCc-eEEeeCCCChhhccCceEEEEEEEcCCCEecceecC-CceEEEEEecEEEEEEEcCCCcchhhccccccccccc
Confidence            34566 455677778999999999999999999999999995 89999999999999999987531              


Q ss_pred             --------EEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCC--------cceehh------------------
Q 040384          136 --------YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLP--------GTQFVH------------------  181 (224)
Q Consensus       136 --------~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~p--------g~~~~~------------------  181 (224)
                              ..++|++||+++||+|++||++|.|++++++++++++.++        ..+.++                  
T Consensus       105 ~~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~  184 (476)
T 1fxz_A          105 SRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ  184 (476)
T ss_dssp             -----CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHHHC------
T ss_pred             cccccccceEEEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCCCcccccCCccceeeccCCcccccccccccccccc
Confidence                    2579999999999999999999999999999999985553        334443                  


Q ss_pred             --------------hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccC--CCcceec
Q 040384          182 --------------SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAIT--SAQLGHR  222 (224)
Q Consensus       182 --------------~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~--~~~~i~r  222 (224)
                                    .++|++   |++++|++||+++.++++||++.+.  +++.|+|
T Consensus       185 ~~~~~~~~~~~~~~~~if~g---f~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~  238 (476)
T 1fxz_A          185 SQKGKHQQEEENEGGSILSG---FTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVT  238 (476)
T ss_dssp             -------------CCCGGGG---SCHHHHHHHHTCCHHHHHHHSCC-----CCSEEE
T ss_pred             ccccccccccccccchhhhc---CCHHHHHhhhCCCHHHHHhhhccccccccccEEE
Confidence                          379987   9999999999999999999999888  6778876

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.94  E-value=4.5e-27  Score=214.87  Aligned_cols=164  Identities=13%  Similarity=0.100  Sum_probs=135.7

Q ss_pred             CCCeeeeccC-CCcccCCCCceEEEe--ecccCCCCcccc-EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEe
Q 040384           55 SDDFFFDLSE-EGNLSNAFGRAVTEG--NVHEFPGVNTQG-ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIIT  130 (224)
Q Consensus        55 ~~df~f~l~~-~~~~~~~~g~~~~~~--~~~~~P~l~~~g-is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~  130 (224)
                      .+.|+|.... -.+.....||.++.+  +..+.|.|+++| +++++++++|||+++|||| +++|++||++|++++++++
T Consensus        11 ~~p~~f~~~~~~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~-~a~ei~yVl~G~~~v~~v~   89 (397)
T 2phl_A           11 DNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVK   89 (397)
T ss_dssp             CCTTEECGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEE
T ss_pred             CCCcEeccchhccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEec-CCCeEEEEEeeeEEEEEEe
Confidence            4567774333 212346788888887  667779999998 9999999999999999999 8999999999999999999


Q ss_pred             CCCeEEEEEECCCCE------EEecCCCeeEEEecC-CccEEEEEEeeCCC-C--cceehh-----hhhhcCCCCCCHHH
Q 040384          131 TDNVFYSKVVTAGML------FLIPRGLVHFQLNVG-KENVLFFPSFNSQL-P--GTQFVH-----SSLFNTTPPIPNEV  195 (224)
Q Consensus       131 ~~~~~~~~~l~~GDv------~vvP~G~~H~~~N~G-~~~a~~~~~~~s~~-p--g~~~~~-----~~lf~~~p~~p~ev  195 (224)
                      ++++ .++.|++||+      ++||+|.+||++|.| ++++.+++++++.+ |  ..+.++     .++|++   ||++|
T Consensus        90 ~~~~-~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~~~~~f~L~G~~~~~s~~~~---~~~~v  165 (397)
T 2phl_A           90 PDDR-REYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQE---FSKHI  165 (397)
T ss_dssp             TTTE-EEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGG---SCHHH
T ss_pred             CCCc-EEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCccceeeeccCCCchhHHhhc---CCHHH
Confidence            8777 5899999999      999999999999999 78999999987543 3  234443     257886   99999


Q ss_pred             HHhhcCCCHHHHHHHHhccC--CCcceecC
Q 040384          196 LTKTFLVGDEVINAIKAAIT--SAQLGHRP  223 (224)
Q Consensus       196 la~af~v~~~~v~~l~~~~~--~~~~i~r~  223 (224)
                      |+++|+++.+++++|+....  +++.|+|.
T Consensus       166 La~af~v~~~~v~~l~~~~~~q~~~~Iv~~  195 (397)
T 2phl_A          166 LEASFNSKFEEINRVLFEEEGQQEGVIVNI  195 (397)
T ss_dssp             HHHHHTSCHHHHHHHHTCSTTCBSSSEEEC
T ss_pred             HHHHhCCCHHHHHhhhhcccccccCceEEc
Confidence            99999999999999994443  45677765

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.94  E-value=2.4e-26  Score=212.95  Aligned_cols=163  Identities=13%  Similarity=0.136  Sum_probs=133.1

Q ss_pred             CCCeeeeccCCCcccCCCCceEEEeec--ccCCCCcccc-EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeC
Q 040384           55 SDDFFFDLSEEGNLSNAFGRAVTEGNV--HEFPGVNTQG-ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITT  131 (224)
Q Consensus        55 ~~df~f~l~~~~~~~~~~g~~~~~~~~--~~~P~l~~~g-is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~  131 (224)
                      .+.|+|............+|.+..++.  .+.|.++++| +++++++++|||+.+|| |++++|++||++|+++++++++
T Consensus        46 ~~p~vf~~~~~~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~  124 (445)
T 2cav_A           46 NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNP  124 (445)
T ss_dssp             CCTTEECGGGEEEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEET
T ss_pred             CCCeEEchhhcCceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeC
Confidence            455677433221122346777777643  5667999988 99999999999999999 6699999999999999999987


Q ss_pred             CCeEEEEEECCCCEEEecCCCeeEEEecC-CccEEEEEEee-CCCCcc---eehh-----hhhhcCCCCCCHHHHHhhcC
Q 040384          132 DNVFYSKVVTAGMLFLIPRGLVHFQLNVG-KENVLFFPSFN-SQLPGT---QFVH-----SSLFNTTPPIPNEVLTKTFL  201 (224)
Q Consensus       132 ~~~~~~~~l~~GDv~vvP~G~~H~~~N~G-~~~a~~~~~~~-s~~pg~---~~~~-----~~lf~~~p~~p~evla~af~  201 (224)
                      +++ +.+.+++||++++|+|..||++|.| +++++++++++ +++|+.   +.++     .++|++   +|++||+++|+
T Consensus       125 ~~~-~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~~~~~~~~~---~~~~vLa~af~  200 (445)
T 2cav_A          125 DGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSA---FSKNFLEASYD  200 (445)
T ss_dssp             TEE-EEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGG---SCHHHHHHHHT
T ss_pred             CCC-EEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCCchhhhhhc---CCHHHHHHHhC
Confidence            655 7899999999999999999999999 89999999887 556653   3344     368887   99999999999


Q ss_pred             CCHHHHHHHHhccCCCcceec
Q 040384          202 VGDEVINAIKAAITSAQLGHR  222 (224)
Q Consensus       202 v~~~~v~~l~~~~~~~~~i~r  222 (224)
                      ++++++++|++...+++.|+|
T Consensus       201 v~~~~v~~l~~~~~~~g~Iv~  221 (445)
T 2cav_A          201 SPYDEIEQTLLQEEQEGVIVK  221 (445)
T ss_dssp             SCHHHHHHHTTSCCSSSSEEE
T ss_pred             CCHHHHHhhhcccCCCCcEEE
Confidence            999999999976666677775

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.94  E-value=2e-26  Score=211.88  Aligned_cols=162  Identities=17%  Similarity=0.171  Sum_probs=133.3

Q ss_pred             CCeeee-ccCCCcccCCCCceEEEe--ecccCCCCcccc-EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeC
Q 040384           56 DDFFFD-LSEEGNLSNAFGRAVTEG--NVHEFPGVNTQG-ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITT  131 (224)
Q Consensus        56 ~df~f~-l~~~~~~~~~~g~~~~~~--~~~~~P~l~~~g-is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~  131 (224)
                      +.|+|. ...........||++..+  +..+.+.|++++ +++++++++||++.+|| |++++|++||++|+++++++++
T Consensus         9 ~p~~f~~~~~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~   87 (416)
T 1uij_A            9 NPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNN   87 (416)
T ss_dssp             CTTEECGGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECS
T ss_pred             CCeEecccccccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEEC
Confidence            456664 433333345678888887  445668999998 99999999999999999 6699999999999999999987


Q ss_pred             CCeEEEEEECCCCEEEecCCCeeEEEecC-CccEEEEEEee-CCCCcc---eehhh-----hhhcCCCCCCHHHHHhhcC
Q 040384          132 DNVFYSKVVTAGMLFLIPRGLVHFQLNVG-KENVLFFPSFN-SQLPGT---QFVHS-----SLFNTTPPIPNEVLTKTFL  201 (224)
Q Consensus       132 ~~~~~~~~l~~GDv~vvP~G~~H~~~N~G-~~~a~~~~~~~-s~~pg~---~~~~~-----~lf~~~p~~p~evla~af~  201 (224)
                       ++.+++.+++||++++|+|..||++|.| +++++++++++ +++|+.   +.+++     ++|++   +|++||+++|+
T Consensus        88 -~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g~~~~~~~~~~---~~~~vLa~af~  163 (416)
T 1uij_A           88 -DDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQG---FSHNILETSFH  163 (416)
T ss_dssp             -SCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGG---SCHHHHHHHHT
T ss_pred             -CCCeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecCCcccchhhhc---CCHHHHHHHhC
Confidence             5567899999999999999999999995 99999999886 556653   34543     47886   99999999999


Q ss_pred             CCHHHHHHHH-hccC----CCcceec
Q 040384          202 VGDEVINAIK-AAIT----SAQLGHR  222 (224)
Q Consensus       202 v~~~~v~~l~-~~~~----~~~~i~r  222 (224)
                      ++++++++|+ +.++    +++.|+|
T Consensus       164 v~~~~v~~l~~~~~~~~~~~~g~Iv~  189 (416)
T 1uij_A          164 SEFEEINRVLFGEEEEQRQQEGVIVE  189 (416)
T ss_dssp             SCHHHHHHHHTCTTCGGGSBSSSEEE
T ss_pred             cCHHHHHhhhhccccccccCcceEEE
Confidence            9999999999 6653    4567775

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.94  E-value=2.3e-26  Score=212.45  Aligned_cols=163  Identities=17%  Similarity=0.170  Sum_probs=132.7

Q ss_pred             CCCeeeeccC-CCcccCCCCceEEEe--ecccCCCCcccc-EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEe
Q 040384           55 SDDFFFDLSE-EGNLSNAFGRAVTEG--NVHEFPGVNTQG-ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIIT  130 (224)
Q Consensus        55 ~~df~f~l~~-~~~~~~~~g~~~~~~--~~~~~P~l~~~g-is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~  130 (224)
                      .+.|+|.+.. -.......||++..+  +..+.|.|++++ +++++++++|||+++|| |++++|++||++|++++++++
T Consensus        20 ~~p~~f~~~~~~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~   98 (434)
T 2ea7_A           20 NNPFYFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVN   98 (434)
T ss_dssp             GCTTEECTTTSEEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEEC
T ss_pred             CCCeEEeccccccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEe
Confidence            3557775444 222335678888887  446778999998 99999999999999999 779999999999999999998


Q ss_pred             CCCeEEEEEECCCCEEEecCCCeeEEEecC-CccEEEEEEee-CCCCcc---eehhh-----hhhcCCCCCCHHHHHhhc
Q 040384          131 TDNVFYSKVVTAGMLFLIPRGLVHFQLNVG-KENVLFFPSFN-SQLPGT---QFVHS-----SLFNTTPPIPNEVLTKTF  200 (224)
Q Consensus       131 ~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G-~~~a~~~~~~~-s~~pg~---~~~~~-----~lf~~~p~~p~evla~af  200 (224)
                      ++ +.+.+.+++||++++|+|..||++|.| +++++++++++ +++|+.   +.+++     ++|++   +|++||+++|
T Consensus        99 ~~-~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~~~~~~~~---~~~~vLa~af  174 (434)
T 2ea7_A           99 PD-SRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRG---FSKNILEASF  174 (434)
T ss_dssp             SS-CEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGG---SCHHHHHHHH
T ss_pred             CC-CCEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcchhhhhhc---CCHHHHHHHh
Confidence            54 467899999999999999999999998 88999999875 566653   34554     47886   9999999999


Q ss_pred             CCCHHHHHHHH-hccC---------CCcceec
Q 040384          201 LVGDEVINAIK-AAIT---------SAQLGHR  222 (224)
Q Consensus       201 ~v~~~~v~~l~-~~~~---------~~~~i~r  222 (224)
                      +++.+++++|+ +.++         +++.|+|
T Consensus       175 ~v~~~~v~~l~~~~~~~~~~~~~~q~~g~Iv~  206 (434)
T 2ea7_A          175 DSDFKEINRVLFGEERQQQQGEESREEGVIVE  206 (434)
T ss_dssp             TSCHHHHHHHHTCC---------CCCSSSEEE
T ss_pred             CCCHHHHHhhhhcccccccccccccccceEEE
Confidence            99999999999 6542         4567765

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=99.94  E-value=1.3e-26  Score=216.96  Aligned_cols=147  Identities=16%  Similarity=0.288  Sum_probs=127.3

Q ss_pred             CCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe----------------
Q 040384           71 AFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV----------------  134 (224)
Q Consensus        71 ~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~----------------  134 (224)
                      ..|| +++++..+.|+|+++|+++++++|.|||+++||||+ ++|++||++|+++++++.+++.                
T Consensus        25 se~G-~~e~~~~~~~~l~~~gv~~~r~~i~pggl~~Ph~~~-~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~  102 (493)
T 2d5f_A           25 SEGG-LIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSP-YPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSR  102 (493)
T ss_dssp             CSSE-EEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEECS-SCEEEEEEECEEEEEECCTTCCCCEEECC---------
T ss_pred             cCCc-EEEEeCCCChhhccCCEEEEEEEeCCCcEeCceecC-CCeEEEEEeCEEEEEEEeCCCccccccccccccccccc
Confidence            3466 677788888999999999999999999999999995 7899999999999999976631                


Q ss_pred             ---------EEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCC--------cceehh----------------
Q 040384          135 ---------FYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLP--------GTQFVH----------------  181 (224)
Q Consensus       135 ---------~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~p--------g~~~~~----------------  181 (224)
                               -..+.|++||+++||+|++||++|.|+++++++++++..+.        ..+.++                
T Consensus       103 ~~~~~~d~~qkv~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~  182 (493)
T 2d5f_A          103 SQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQ  182 (493)
T ss_dssp             ----CSEEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCGGGTC----
T ss_pred             cccccccccceEEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCcCcccccccccceeeccCCccccchhhhhhccc
Confidence                     02468999999999999999999999999999999984432        334444                


Q ss_pred             -------------------hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384          182 -------------------SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR  222 (224)
Q Consensus       182 -------------------~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r  222 (224)
                                         .++|++   |++++|++||+++.++++||++.+.+++.|+|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~nif~g---f~~e~La~aF~v~~~~v~kl~~~~~~~g~Iv~  239 (493)
T 2d5f_A          183 QKSHGGRKQGQHQQQEEEGGSVLSG---FSKHFLAQSFNTNEDTAEKLRSPDDERKQIVT  239 (493)
T ss_dssp             -----------------CCCCGGGG---SCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEE
T ss_pred             ccccccccccccccccccccchhhc---CCHHHHHhHhCCCHHHHHHhhhcccCcccEEE
Confidence                               378986   99999999999999999999999998888886

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.94  E-value=1.8e-26  Score=215.90  Aligned_cols=150  Identities=13%  Similarity=0.253  Sum_probs=128.4

Q ss_pred             cCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-E-----------
Q 040384           69 SNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-Y-----------  136 (224)
Q Consensus        69 ~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~-----------  136 (224)
                      ....|| +++++..++|+|+++|++++|++|.|+|+++||||+ |+|++||++|++.+||+.|++.. |           
T Consensus        26 i~se~G-~~e~w~~~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~~-a~el~yV~qG~g~~G~v~Pgcpet~~~~~~~~~~~~  103 (531)
T 3fz3_A           26 IQAEAG-QIETWNFNQGDFQCAGVAASRITIQRNGLHLPSYSN-APQLIYIVQGRGVLGAVFSGCPETFEESQQSSQQGR  103 (531)
T ss_dssp             EEETTE-EEEECCTTSHHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEECCTTCCCCEECCCC------
T ss_pred             cccCCc-eEEEeCCCChhhccCcceEEEEEecCCCEeCCccCC-CCeEEEEEECcEEEEEEcCCCccccccccccccccc
Confidence            345666 667777889999999999999999999999999995 99999999999999999885310 0           


Q ss_pred             ---------------------------------------------------------------------EEEECCCCEEE
Q 040384          137 ---------------------------------------------------------------------SKVVTAGMLFL  147 (224)
Q Consensus       137 ---------------------------------------------------------------------~~~l~~GDv~v  147 (224)
                                                                                           ...+++||++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr~GDvia  183 (531)
T 3fz3_A          104 QQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREGDVVA  183 (531)
T ss_dssp             -------------------------------------------------------------CCSCEESCCEEEETTEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeeecccCCcEEE
Confidence                                                                                 25789999999


Q ss_pred             ecCCCeeEEEecCCccEEEEEEeeCCCC--------cceehh--------------------------------------
Q 040384          148 IPRGLVHFQLNVGKENVLFFPSFNSQLP--------GTQFVH--------------------------------------  181 (224)
Q Consensus       148 vP~G~~H~~~N~G~~~a~~~~~~~s~~p--------g~~~~~--------------------------------------  181 (224)
                      ||+|.+||++|+|+++++++++++..|.        ..++++                                      
T Consensus       184 iPaG~~~w~yN~G~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (531)
T 3fz3_A          184 IPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQE  263 (531)
T ss_dssp             ECTTCCEEEECCSSSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC-----------------------------
T ss_pred             ECCCCeEEEEeCCCceEEEEEEEccccccccCCCccceeEEcCCCcccccccccccccccccccccccccccccccchhh
Confidence            9999999999999999999999975442        223332                                      


Q ss_pred             -----hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceecC
Q 040384          182 -----SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP  223 (224)
Q Consensus       182 -----~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r~  223 (224)
                           .++|++   |+.++|++||+++.++++||++.++.++.|||-
T Consensus       264 ~~~~~~nifsG---Fs~e~La~A~~v~~~~a~kLq~~~~~rg~IVrv  307 (531)
T 3fz3_A          264 QQGNGNNVFSG---FNTQLLAQALNVNEETARNLQGQNDNRNQIIQV  307 (531)
T ss_dssp             ---CCSSGGGG---SCHHHHHHHHTSCHHHHHHHHTSSCCSCSEEEC
T ss_pred             hcccCCCeeec---CCHHHHHHHHCCCHHHHHHHhcccccCceEEEe
Confidence                 379997   999999999999999999999999889999874

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.93  E-value=3.9e-26  Score=211.86  Aligned_cols=149  Identities=16%  Similarity=0.247  Sum_probs=126.5

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-E------------
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-Y------------  136 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~------------  136 (224)
                      ...||.+..++ .+-|+|+++|++++|++++|||+++||||+ |+|++||++|++++|++.+++.. +            
T Consensus        22 ~se~G~~e~w~-~~~~~L~~~gvs~~r~~i~p~Gl~lPh~~~-a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~   99 (466)
T 3kgl_A           22 KAEAGRIEVWD-HHAPQLRCSGVSFVRYIIESKGLYLPSFFS-TAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGS   99 (466)
T ss_dssp             EETTEEEEECC-TTSHHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC--
T ss_pred             eCCCcEEEEEC-CCChhhccCCeEEEEEEECCCCEeCCeeCC-CCeEEEEEeCeEEEEEecCCCcchhhccccccccccc
Confidence            45677555555 455999999999999999999999999995 99999999999999999885321 1            


Q ss_pred             ----------------------------------------------EEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384          137 ----------------------------------------------SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus       137 ----------------------------------------------~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                                                                    ...|++||+++||+|++||++|.|++++++++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~  179 (466)
T 3kgl_A          100 PFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVL  179 (466)
T ss_dssp             ---------------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEEE
Confidence                                                          1489999999999999999999999999999999


Q ss_pred             eCCCC--------cceehh------------------hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceecC
Q 040384          171 NSQLP--------GTQFVH------------------SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP  223 (224)
Q Consensus       171 ~s~~p--------g~~~~~------------------~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r~  223 (224)
                      +..|.        ..+.++                  .++|++   |+.++|++||+++.++++||+..+++++.|+|-
T Consensus       180 d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~sG---F~~e~La~Af~v~~e~~~kL~~~q~~~G~Iv~v  255 (466)
T 3kgl_A          180 DLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNG---FTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRV  255 (466)
T ss_dssp             ESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGGG---SCHHHHHHHHTSCHHHHHHHTCTTCCSCSEEEC
T ss_pred             cCCCcccccCCceeeeEecCCCccccccccccccccCCCcccc---CCHHHHHHHhCCCHHHHHHHhccccCceeEEEe
Confidence            76543        334554                  278886   999999999999999999999998888888863

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.93  E-value=7.2e-26  Score=212.18  Aligned_cols=149  Identities=13%  Similarity=0.193  Sum_probs=127.3

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE--------------
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF--------------  135 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~--------------  135 (224)
                      ...|| +++++..+.|+|+++|++++|++|+|||+.+|||| +++|++||++|+++++++++++..              
T Consensus        27 ~se~G-~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~-~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~  104 (510)
T 3c3v_A           27 ESEGG-YIETWNPNNQEFECAGVALSRLVLRRNALRRPFYS-NAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQS  104 (510)
T ss_dssp             EETTE-EEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECCEEEEEECTTCCCCEEEECCC------
T ss_pred             ccCCc-eEEEeCCCCcccccCcEEEEEEEECCCCCccceec-CCCeEEEEEeCEEEEEEEeCCCcccccccccccccccc
Confidence            34566 67778888899999999999999999999999999 589999999999999999876410              


Q ss_pred             ---------------------EEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCC--------cceehh-----
Q 040384          136 ---------------------YSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLP--------GTQFVH-----  181 (224)
Q Consensus       136 ---------------------~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~p--------g~~~~~-----  181 (224)
                                           ..+.|++||+++||+|++||++|.|+++++++++++..|+        ..+.++     
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n~~nqld~~~r~F~LaG~~~~  184 (510)
T 3c3v_A          105 QRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAGNHEQ  184 (510)
T ss_dssp             --------------CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTBTTCCSCSCCCCEESSCCCCC
T ss_pred             ccccccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCCcccccccccceeEecCCccc
Confidence                                 1268999999999999999999999999999999986653        223332     


Q ss_pred             -------------------------------------------------------hhhhcCCCCCCHHHHHhhcCCC-HH
Q 040384          182 -------------------------------------------------------SSLFNTTPPIPNEVLTKTFLVG-DE  205 (224)
Q Consensus       182 -------------------------------------------------------~~lf~~~p~~p~evla~af~v~-~~  205 (224)
                                                                             .++|++   |++++|+++|+++ ++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sg---F~~~~La~af~v~~~~  261 (510)
T 3c3v_A          185 EFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSG---FTPEFLAQAFQVDDRQ  261 (510)
T ss_dssp             TTGGGCC------------------------------------------------CCTGGG---SCHHHHHHHHTCCCHH
T ss_pred             ccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccceec---CCHHHHHHHhCCCHHH
Confidence                                                                   268897   9999999999999 99


Q ss_pred             HHHHHHhccC--CCcceecC
Q 040384          206 VINAIKAAIT--SAQLGHRP  223 (224)
Q Consensus       206 ~v~~l~~~~~--~~~~i~r~  223 (224)
                      ++++|++.+.  +++.|+|-
T Consensus       262 ~~~~l~~~~~~~~~g~Iv~v  281 (510)
T 3c3v_A          262 IVQNLRGENESEEQGAIVTV  281 (510)
T ss_dssp             HHHHHTTTTCCTTSCSEEEC
T ss_pred             HHHHhhccccccccccEEEe
Confidence            9999998887  67788763

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.93  E-value=1.1e-25  Score=207.03  Aligned_cols=151  Identities=15%  Similarity=0.205  Sum_probs=117.5

Q ss_pred             CCeeeeccCCCcccCCCCceEEEee-----cccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEe
Q 040384           56 DDFFFDLSEEGNLSNAFGRAVTEGN-----VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIIT  130 (224)
Q Consensus        56 ~df~f~l~~~~~~~~~~g~~~~~~~-----~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~  130 (224)
                      +.|+|..+.=........|.+..+.     +..+|+|+  ++++++++++|||+.+|| |++|+|++||++|++++++++
T Consensus         5 ~p~~f~~~~f~~~~~se~G~i~~l~~f~~~s~~l~~l~--~~~l~~~~l~p~gl~~Ph-h~~A~ei~yV~~G~g~~g~V~   81 (418)
T 3s7i_A            5 NPFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQ--NHRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVAN   81 (418)
T ss_dssp             CTTEECGGGEEEEEECSSEEEEEECCHHHHCGGGGGGT--TCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEEC
T ss_pred             CCcccccccccceEEcCCcEEEEecccCCcchhccccc--ceEEEEEEecCCceeeee-eCCCCeEEEEEEeeEEEEEEe
Confidence            4466643221122356777788874     23555555  678889999999999999 789999999999999999999


Q ss_pred             CCCeEEEEEECCCCEEEecCCCeeEEEecCCc-cEEEEEE-eeCCCCccee---hh-----hhhhcCCCCCCHHHHHhhc
Q 040384          131 TDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKE-NVLFFPS-FNSQLPGTQF---VH-----SSLFNTTPPIPNEVLTKTF  200 (224)
Q Consensus       131 ~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~-~a~~~~~-~~s~~pg~~~---~~-----~~lf~~~p~~p~evla~af  200 (224)
                      +++ .+.++|++||+++||+|++||++|.|+. .+.++++ +++++||.+.   ++     .++|++   ||++||+++|
T Consensus        82 ~~~-~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~~~~~s~~~g---f~~evLa~af  157 (418)
T 3s7i_A           82 GNN-RKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSSYLQG---FSRNTLEAAF  157 (418)
T ss_dssp             SSC-EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCCSSCCCGGGG---SCHHHHHHHH
T ss_pred             cCC-EEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCCcchhHHhhc---CCHHHHHHHH
Confidence            854 4689999999999999999999998755 4555543 4566787533   22     358886   9999999999


Q ss_pred             CCCHHHHHHHHhc
Q 040384          201 LVGDEVINAIKAA  213 (224)
Q Consensus       201 ~v~~~~v~~l~~~  213 (224)
                      +++++++++|+..
T Consensus       158 ~v~~~~v~kl~~~  170 (418)
T 3s7i_A          158 NAEFNEIRRVLLE  170 (418)
T ss_dssp             TSCHHHHHHHTTS
T ss_pred             CcCHHHHHhhhcc
Confidence            9999999999844

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.92  E-value=2.1e-24  Score=193.33  Aligned_cols=157  Identities=18%  Similarity=0.257  Sum_probs=139.2

Q ss_pred             CCCccCCCeee-eccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEE
Q 040384           50 ETEVTSDDFFF-DLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGI  128 (224)
Q Consensus        50 ~~~vt~~df~f-~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~  128 (224)
                      +...+.++|+| .+..++ ..+..|++++.+...++|+++  ++++.++.++||+..++|||+++.|++||++|++++.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~-~~~~~gg~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v  270 (361)
T 2vqa_A          194 QTAKIEVPHTHNLLGQQP-LVSLGGNELRLASAKEFPGSF--NMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTV  270 (361)
T ss_dssp             CCCBCCSCCEEECTTSCC-SEEETTEEEEEECTTTCTTST--TCEEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEE
T ss_pred             cCCCCCcceEeccccCCC-cccCCCceEEEEehhhCcCcc--cceEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEE
Confidence            44667889998 565554 346788999999999999988  57889999999999999999988999999999999999


Q ss_pred             EeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHH
Q 040384          129 ITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVIN  208 (224)
Q Consensus       129 v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~  208 (224)
                      ++++|+.....|++||++++|+|..|++.|.|++++.++.++...+++...++++ +++   +|++||+++|++++++++
T Consensus       271 ~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~~-~~~---~~~~vl~~~f~~~~~~~~  346 (361)
T 2vqa_A          271 FASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLSTW-LAS---NPSSVLGNTFQISPELTK  346 (361)
T ss_dssp             ECSTTCEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCCEEHHHH-HHT---SCHHHHHHHHTCCHHHHT
T ss_pred             EcCCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcceeeHHHH-hhh---CCHHHHHHHHCcCHHHHH
Confidence            8877776689999999999999999999999999999999999999999988875 575   999999999999999999


Q ss_pred             HHHhc
Q 040384          209 AIKAA  213 (224)
Q Consensus       209 ~l~~~  213 (224)
                      +|++.
T Consensus       347 ~l~~~  351 (361)
T 2vqa_A          347 KLPVQ  351 (361)
T ss_dssp             TSCCS
T ss_pred             hhhcc
Confidence            99743

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.88  E-value=9e-22  Score=176.25  Aligned_cols=151  Identities=19%  Similarity=0.248  Sum_probs=128.7

Q ss_pred             CeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEE
Q 040384           57 DFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFY  136 (224)
Q Consensus        57 df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~  136 (224)
                      .+.|.+....+. ...||.++.++..++|.+.  ++++.++.+.||++.+||||+++.|++||++|++++++++++++..
T Consensus        20 ~~~~~~~~~~~~-~~~~G~~~~~~~~~~p~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~   96 (361)
T 2vqa_A           20 AFTYAFSKTPLV-LYDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE   96 (361)
T ss_dssp             CSEECGGGSCCE-EETTEEEEEESTTTCTTCC--SCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE
T ss_pred             ceEEEcccCCce-ecCCceEEEeChhhCcccc--ceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE
Confidence            366755444443 3478889999999999988  5799999999999999999988999999999999999998777545


Q ss_pred             EEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCc---ceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhc
Q 040384          137 SKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPG---TQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAA  213 (224)
Q Consensus       137 ~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg---~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~~~  213 (224)
                      ...|++||++++|+|..|++.|.|+++++++.+++..++.   .+... ++|++   +|.++|+++|+++.+.+++|++.
T Consensus        97 ~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~~~~~~~~~~~~-~~~~~---~p~~vLa~~~~v~~~~~~~l~~~  172 (361)
T 2vqa_A           97 IADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEGATFSVT-DWLSH---TPIAWVEENLGWTAAQVAQLPKK  172 (361)
T ss_dssp             EEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESSTTCCTTSSEEHH-HHHHT---SCHHHHHHHHTCCHHHHTTSCSS
T ss_pred             EEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCccccceecHh-HHHHh---CCHHHHHHHhCcCHHHHHhcccc
Confidence            6899999999999999999999999999999999877665   34444 45676   99999999999999999999865


Q ss_pred             c
Q 040384          214 I  214 (224)
Q Consensus       214 ~  214 (224)
                      .
T Consensus       173 ~  173 (361)
T 2vqa_A          173 Q  173 (361)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.82  E-value=2.8e-19  Score=161.61  Aligned_cols=153  Identities=18%  Similarity=0.301  Sum_probs=128.1

Q ss_pred             cCCCeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC
Q 040384           54 TSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN  133 (224)
Q Consensus        54 t~~df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~  133 (224)
                      ....|+|........ ...|+.++.+....++..+  ++++.++.++||+..++|||+.+.|++||++|++++.+.+++|
T Consensus       222 ~~~~~v~~~~~~~~~-~~~~g~~~~~~~~~~~~~~--~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g  298 (385)
T 1j58_A          222 VPYPFTYRLLEQEPI-ESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDG  298 (385)
T ss_dssp             CSSCSEEEGGGSCCE-ECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETT
T ss_pred             CCCCeeeecccCCCe-eCCCceEEEeecccCCccc--ceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCC
Confidence            355677743333233 3456778888888888655  6899999999999999999988799999999999999876666


Q ss_pred             eEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhc
Q 040384          134 VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAA  213 (224)
Q Consensus       134 ~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~~~  213 (224)
                      +-....|++||++++|+|..|++.|.|++++.++.++....+....+..++ +.   +|+++++++|+++++++++|++.
T Consensus       299 ~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~~~~~~d~~~~~~l-~~---~~~~v~~~~f~~~~~~~~~l~~~  374 (385)
T 1j58_A          299 HARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWL-AM---LPETFVQAHLDLGKDFTDVLSKE  374 (385)
T ss_dssp             EEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEHHHHH-HT---SCHHHHHHHHTCCHHHHTTCCSS
T ss_pred             cEEEEEEcCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCccccCHHHHH-Hh---CCHHHHHHHhCCCHHHHHhhhcc
Confidence            556789999999999999999999999999999999988777777776665 65   99999999999999999999854

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.81  E-value=9.5e-20  Score=164.66  Aligned_cols=147  Identities=24%  Similarity=0.316  Sum_probs=123.9

Q ss_pred             eeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEE
Q 040384           58 FFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYS  137 (224)
Q Consensus        58 f~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~  137 (224)
                      ++|.+...... ...||+++.++...+|.++  ++++.++.+.||+..++|||+ +.|++||++|++++++++++|+.+.
T Consensus        48 ~~~~~~~~~~~-~~~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g~~~~  123 (385)
T 1j58_A           48 MKFSFSDTHNR-LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKGRSFI  123 (385)
T ss_dssp             CEECGGGSCCE-EETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTSCEEE
T ss_pred             eEEEcccCCcc-ccCCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCCcEEE
Confidence            66754444333 3478889999999999998  789999999999999999997 7999999999999999987787666


Q ss_pred             EEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCccee--hhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 040384          138 KVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQF--VHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKA  212 (224)
Q Consensus       138 ~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~--~~~~lf~~~p~~p~evla~af~v~~~~v~~l~~  212 (224)
                      +.|++||++++|+|..|++.|.+ +++.++.+|+...+....  ...++|+.   +|.++|+++|+++.++++++++
T Consensus       124 ~~l~~GD~~~ip~g~~H~~~n~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~p~evla~~~~vs~~~~~~l~~  196 (385)
T 1j58_A          124 DDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDGSFSENSTFQLTDWLAH---TPKEVIAANFGVTKEEISNLPG  196 (385)
T ss_dssp             EEEETTEEEEECTTCCEEEEEEE-EEEEEEEEESCTTCCGGGEEEHHHHHHT---SCHHHHHHHHTCCTGGGTTSCS
T ss_pred             EEeCCCCEEEECCCCeEEEEECC-CCEEEEEEECCCCccccchhhhhhhhhc---ccHHHHHHHhCCCHHHHHhccc
Confidence            79999999999999999999997 458888889877665432  22456676   9999999999999999988865

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.81  E-value=1.9e-20  Score=134.64  Aligned_cols=74  Identities=19%  Similarity=0.289  Sum_probs=65.1

Q ss_pred             ee-ccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe
Q 040384           60 FD-LSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV  134 (224)
Q Consensus        60 f~-l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~  134 (224)
                      |+ +++.+.++|..|. ++.+++.++|+|+++|+|++|+++.|||+.+|||||+|+|++||++|++++++|+++|+
T Consensus         4 fnl~~~~p~~~n~~G~-~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g~   78 (79)
T 1dgw_X            4 FNLRSRDPIYSNNYGK-LYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQ   78 (79)
T ss_dssp             EETTSSCCSEECSSEE-EEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC--
T ss_pred             cccccCCCCccCCCCc-EEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCCC
Confidence            53 4556677666665 69999999999999999999999999999999999999999999999999999998764

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.49  E-value=1.6e-13  Score=104.45  Aligned_cols=84  Identities=20%  Similarity=0.245  Sum_probs=72.1

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      ++.+.++.+.||+..++|||+...|++||++|++++.+  .+++  ...|++||++++|+|..|++.|.+++++.+++++
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~  113 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGI--VTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVV  113 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTC--EEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCe--EEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEE
Confidence            57889999999999999999877899999999999864  1344  6899999999999999999999999999999888


Q ss_pred             eCCCCcce
Q 040384          171 NSQLPGTQ  178 (224)
Q Consensus       171 ~s~~pg~~  178 (224)
                      ....+++.
T Consensus       114 ~p~~~~~~  121 (125)
T 3h8u_A          114 APGNAGFA  121 (125)
T ss_dssp             ESTTCCCC
T ss_pred             CCCcccch
Confidence            76655543

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=99.47  E-value=1.5e-13  Score=117.68  Aligned_cols=83  Identities=18%  Similarity=0.162  Sum_probs=70.9

Q ss_pred             ccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEE--------EeC-------CCeEEEEEECCCCEEEecCCC
Q 040384           88 NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGI--------ITT-------DNVFYSKVVTAGMLFLIPRGL  152 (224)
Q Consensus        88 ~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~--------v~~-------~~~~~~~~l~~GDv~vvP~G~  152 (224)
                      .+.++++.++.++||+..++|||++..|++||++|++++.+        -+.       +++.+...+++||++++|+|.
T Consensus        39 ~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~  118 (239)
T 2xlg_A           39 KDIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHY  118 (239)
T ss_dssp             TTEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTE
T ss_pred             CCCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCC
Confidence            34478999999999999999999989999999999999876        221       124557899999999999999


Q ss_pred             eeEEEecCCccEEE-EEEe
Q 040384          153 VHFQLNVGKENVLF-FPSF  170 (224)
Q Consensus       153 ~H~~~N~G~~~a~~-~~~~  170 (224)
                      .|.+.|.+++++.+ +..+
T Consensus       119 ~H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          119 MHGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEEEECCSSSCEEEEEEEE
T ss_pred             CEEEEeCCCCCEEEEEEEE
Confidence            99999999999888 6666

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.45  E-value=8.4e-13  Score=105.23  Aligned_cols=81  Identities=17%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             cEEEEEEEEeCCc-ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCC-CeeEEEecCCccEEEEE
Q 040384           91 GISTNRVDLAVGG-INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRG-LVHFQLNVGKENVLFFP  168 (224)
Q Consensus        91 gis~~rv~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G-~~H~~~N~G~~~a~~~~  168 (224)
                      ++.+.++.++||+ ..++|||+...|++||++|++++.+   +++  ...+++||++++|+| ..|++.|.|++++.++.
T Consensus        45 ~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~  119 (162)
T 3l2h_A           45 HMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---END--QYPIAPGDFVGFPCHAAAHSISNDGTETLVCLV  119 (162)
T ss_dssp             SEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTSCCEEEECCSSSCEEEEE
T ss_pred             eEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCE--EEEeCCCCEEEECCCCceEEeEeCCCCCEEEEE
Confidence            6889999999999 5899999888999999999999886   455  689999999999997 99999999999999888


Q ss_pred             EeeCCCCc
Q 040384          169 SFNSQLPG  176 (224)
Q Consensus       169 ~~~s~~pg  176 (224)
                      +.....+.
T Consensus       120 v~~p~~~~  127 (162)
T 3l2h_A          120 IGQRLDQD  127 (162)
T ss_dssp             EEECCSEE
T ss_pred             EECCCCCC
Confidence            77655433

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.44  E-value=2e-12  Score=103.28  Aligned_cols=114  Identities=15%  Similarity=0.111  Sum_probs=82.7

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC----CeEEEEEECCCCEEEecCCCeeEEEecC-CccEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD----NVFYSKVVTAGMLFLIPRGLVHFQLNVG-KENVL  165 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----~~~~~~~l~~GDv~vvP~G~~H~~~N~G-~~~a~  165 (224)
                      ++.+.++.+.||+..++|+|+ ..|++||++|++++.+.+.+    ++.....+++||++++|+|..|++.|.+ ++++.
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~  118 (163)
T 1lr5_A           40 EVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQ  118 (163)
T ss_dssp             SEEEEEEEECTTCBCCEEEES-SCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEE
T ss_pred             cEEEEEEEECCCCcCCCeECC-CCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEE
Confidence            688899999999999999995 68999999999999874321    1224789999999999999999999999 88999


Q ss_pred             EEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHH
Q 040384          166 FFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINA  209 (224)
Q Consensus       166 ~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~  209 (224)
                      ++.++...........+++ ..   +....+...+.++.+.+++
T Consensus       119 ~l~i~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~  158 (163)
T 1lr5_A          119 VLVIISRPPAKIFLYDDWS-MP---HTAAVLKFPFVWDEDCFEA  158 (163)
T ss_dssp             EEEEEESSSCCEEEESSTT-SC---GGGCEEESSCTTTHHHHHH
T ss_pred             EEEEECCCCcccccccccc-cC---CcCccceeccccccccccc
Confidence            8888765433333322222 21   3333344445566665554

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.43  E-value=1.4e-12  Score=94.83  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=69.4

Q ss_pred             ccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           88 NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        88 ~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .+.++.+.++.+.||+..++|+|+...|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+++++.++
T Consensus        24 ~~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~   98 (105)
T 1v70_A           24 QSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE--EALLAPGMAAFAPAGAPHGVRNESASPALLL   98 (105)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTSCEEEECCSSSCEEEE
T ss_pred             CCCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            34478899999999999999999777799999999999876   344  6899999999999999999999998888888


Q ss_pred             EEee
Q 040384          168 PSFN  171 (224)
Q Consensus       168 ~~~~  171 (224)
                      .++.
T Consensus        99 ~v~~  102 (105)
T 1v70_A           99 VVTA  102 (105)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            7764

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.40  E-value=7.7e-12  Score=103.07  Aligned_cols=100  Identities=17%  Similarity=0.225  Sum_probs=80.2

Q ss_pred             CceEEEeecccCCCCccccEEEEEEEEeCCcc------cCceecC--CCCceEEEEeCeEEEEEEeCCCeEEEEEECCCC
Q 040384           73 GRAVTEGNVHEFPGVNTQGISTNRVDLAVGGI------NPPHLHP--RSSESSIVIRGTVLVGIITTDNVFYSKVVTAGM  144 (224)
Q Consensus        73 g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~------~~pH~Hp--~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GD  144 (224)
                      +..+..+...-.|... .++.+..+.++||+.      .++|+|+  +..|++||++|++.+.+.+..|+.....+++||
T Consensus        49 ~~~~~~v~~l~~~~~~-~~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD  127 (190)
T 1x82_A           49 DPVVYEVYAVEQEEKE-GDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGT  127 (190)
T ss_dssp             CCEEEEEEEECCCSCT-TCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTC
T ss_pred             CceEEEEEEecCCCCC-CCeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCc
Confidence            3445555332233332 367888889999998      8899998  347999999999999987766777789999999


Q ss_pred             EEEecCCCeeEEEecCCccEEEEEEeeCC
Q 040384          145 LFLIPRGLVHFQLNVGKENVLFFPSFNSQ  173 (224)
Q Consensus       145 v~vvP~G~~H~~~N~G~~~a~~~~~~~s~  173 (224)
                      ++++|+|..|+..|.|++++.+++++...
T Consensus       128 ~v~ip~g~~H~~~N~g~~~~~~l~v~~~~  156 (190)
T 1x82_A          128 VVYVPPYWAHRTVNIGDEPFIFLAIYPAD  156 (190)
T ss_dssp             EEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred             EEEECCCCeEEEEECCcccEEEEEEECCC
Confidence            99999999999999999999988877643

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.39  E-value=1.4e-12  Score=95.55  Aligned_cols=77  Identities=17%  Similarity=0.273  Sum_probs=66.4

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ..+.+.+++++||+..++|+|+...|++||++|++++.+  .++. ....|++||.+++|+|..|+..|.|++++.++.+
T Consensus        16 ~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~-~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           16 ERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGS-VTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             SSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEE-EEEEECTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             CeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCC-EEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            368899999999999999999876579999999999886  2221 3689999999999999999999999999887764

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.37  E-value=1.7e-11  Score=98.98  Aligned_cols=116  Identities=18%  Similarity=0.179  Sum_probs=84.9

Q ss_pred             CCccCCCeee-eccCCC---cccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEE
Q 040384           51 TEVTSDDFFF-DLSEEG---NLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLV  126 (224)
Q Consensus        51 ~~vt~~df~f-~l~~~~---~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v  126 (224)
                      .-+..+++.| .+....   ......|...+....... +....++.+.++.++||+..++|||+ ..|++||++|++++
T Consensus        12 ~iv~~~~~~W~~~~~~~~~~~~~~~~g~~~~~L~~~~~-g~~~~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~~   89 (167)
T 3ibm_A           12 RVLRERDYRWEGTEEEAYKAEGTHFSGARRQTLVGRPA-GQEAPAFETRYFEVEPGGYTTLERHE-HTHVVMVVRGHAEV   89 (167)
T ss_dssp             EEECEETTEETTCCCC---------CCEEEEEEECTTT-TCCSSSEEEEEEEECTTCBCCCBBCS-SCEEEEEEESEEEE
T ss_pred             ceeecCCcccccceeeeccCCCCcCCCcEEEEEECCCC-CCCCCcEEEEEEEECCCCCCCCccCC-CcEEEEEEeCEEEE
Confidence            4556677777 433211   001224554444443332 22334788999999999999999995 78999999999998


Q ss_pred             EEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC-CccEEEEEEeeCC
Q 040384          127 GIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG-KENVLFFPSFNSQ  173 (224)
Q Consensus       127 ~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G-~~~a~~~~~~~s~  173 (224)
                      .+   +++  .+.+++||++++|+|..|++.|.+ ++++.+++++...
T Consensus        90 ~i---~~~--~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~  132 (167)
T 3ibm_A           90 VL---DDR--VEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD  132 (167)
T ss_dssp             EE---TTE--EEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred             EE---CCE--EEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence            86   455  689999999999999999999999 9999988887644

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.36  E-value=5.9e-12  Score=101.20  Aligned_cols=81  Identities=20%  Similarity=0.173  Sum_probs=70.9

Q ss_pred             cEEEEEEEEeCCccc-CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCC--CeeEEEecCCccEEEE
Q 040384           91 GISTNRVDLAVGGIN-PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRG--LVHFQLNVGKENVLFF  167 (224)
Q Consensus        91 gis~~rv~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G--~~H~~~N~G~~~a~~~  167 (224)
                      .+.+.++.+.||+.. ++|||+...|++||++|++++.+   +++  ...|++||++++|+|  ..|.+.|.++++++++
T Consensus        42 ~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~--~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l  116 (163)
T 3i7d_A           42 QFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQG--EHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFL  116 (163)
T ss_dssp             SEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCCCBEEECCSSSCEEEE
T ss_pred             eEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCE--EEEeCCCCEEEECCCCCcceEEEECCCCCEEEE
Confidence            688999999999965 79999876899999999999986   454  689999999999999  9999999999999998


Q ss_pred             EEeeCCCCc
Q 040384          168 PSFNSQLPG  176 (224)
Q Consensus       168 ~~~~s~~pg  176 (224)
                      .+.......
T Consensus       117 ~v~~p~~~d  125 (163)
T 3i7d_A          117 VVGTRTPTE  125 (163)
T ss_dssp             EEEECCSCE
T ss_pred             EEECCCCCC
Confidence            887655443

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.36  E-value=6.4e-12  Score=92.85  Aligned_cols=79  Identities=19%  Similarity=0.230  Sum_probs=69.3

Q ss_pred             cccEEEEEEEEeCCcccCce--ecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEE
Q 040384           89 TQGISTNRVDLAVGGINPPH--LHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLF  166 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH--~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~  166 (224)
                      ..++.+.++.+.||+..++|  +|++..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+++++.+
T Consensus        18 ~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~   92 (113)
T 2gu9_A           18 LRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGH--TQALQAGSLIAIERGQAHEIRNTGDTPLKT   92 (113)
T ss_dssp             ETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTE--EEEECTTEEEEECTTCCEEEECCSSSCEEE
T ss_pred             CCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEcCCCCCEEE
Confidence            34688999999999999888  99767899999999999886   454  689999999999999999999999989888


Q ss_pred             EEEeeC
Q 040384          167 FPSFNS  172 (224)
Q Consensus       167 ~~~~~s  172 (224)
                      +.++..
T Consensus        93 ~~v~~~   98 (113)
T 2gu9_A           93 VNFYHP   98 (113)
T ss_dssp             EEEEES
T ss_pred             EEEECC
Confidence            877654

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.34  E-value=5.5e-12  Score=99.34  Aligned_cols=84  Identities=19%  Similarity=0.266  Sum_probs=70.3

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .++.+.++.+.||+..++|||+...|++||++|++++.+-+.... .+...|++||++++|+|..|++.|.+++++.++.
T Consensus        41 ~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~  120 (148)
T 2oa2_A           41 DHLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYS  120 (148)
T ss_dssp             SSCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEE
T ss_pred             CceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEE
Confidence            357888999999999999999877799999999999987543211 1348999999999999999999999999998887


Q ss_pred             EeeCC
Q 040384          169 SFNSQ  173 (224)
Q Consensus       169 ~~~s~  173 (224)
                      ++...
T Consensus       121 i~~~~  125 (148)
T 2oa2_A          121 IYAPP  125 (148)
T ss_dssp             EEESC
T ss_pred             EECCC
Confidence            76543

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.34  E-value=9.8e-13  Score=97.50  Aligned_cols=79  Identities=14%  Similarity=0.150  Sum_probs=68.1

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .-.+.+.|++++||+..++|+|+...|++||++|++++..  .+++.....+++||.+++|.|..|...|.|++++.++.
T Consensus        14 n~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~Ie   91 (98)
T 3lag_A           14 NDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFLE   91 (98)
T ss_dssp             SSSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEE
T ss_pred             CCeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEEEEcCCCcEECEECCCCeEEEEE
Confidence            3468999999999999999999988889999999998764  34544456799999999999999999999999999887


Q ss_pred             E
Q 040384          169 S  169 (224)
Q Consensus       169 ~  169 (224)
                      +
T Consensus        92 V   92 (98)
T 3lag_A           92 I   92 (98)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.33  E-value=1.3e-11  Score=95.45  Aligned_cols=84  Identities=19%  Similarity=0.295  Sum_probs=71.3

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .++++.++.++||+..++|||+ ..|++||++|++++.+.. +++  ...+++||++++|+|..|.+.|.+++++.++.+
T Consensus        37 ~~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~~~-~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i  112 (145)
T 3ht1_A           37 DRFVLTEFEVSPNGSTPPHFHE-WEHEIYVLEGSMGLVLPD-QGR--TEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVV  112 (145)
T ss_dssp             CSEEEEEEEEEEEEECCCEECS-SCEEEEEEEECEEEEEGG-GTE--EEEECTTCEEEECTTCCBEEECCTTCCEEEEEE
T ss_pred             CcEEEEEEEECCCCcCCCccCC-CceEEEEEEeEEEEEEeE-CCE--EEEECCCCEEEECCCCeEEeEcCCCCCEEEEEE
Confidence            3688999999999999999996 578899999999987211 344  689999999999999999999999999998888


Q ss_pred             eeCCCCcc
Q 040384          170 FNSQLPGT  177 (224)
Q Consensus       170 ~~s~~pg~  177 (224)
                      +....+..
T Consensus       113 ~~~~~~~~  120 (145)
T 3ht1_A          113 APCERPPV  120 (145)
T ss_dssp             EESCCCCC
T ss_pred             ECCCCCCe
Confidence            87665554

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.31  E-value=7.5e-12  Score=95.07  Aligned_cols=78  Identities=23%  Similarity=0.441  Sum_probs=68.1

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      +.++.+.++.+.||+..++|+|+. .|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.++ ++.++.
T Consensus        38 ~~~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~  110 (126)
T 4e2g_A           38 GKNLMLNWVRIEPNTEMPAHEHPH-EQAGVMLEGTLELTI---GEE--TRVLRPGMAYTIPGGVRHRARTFED-GCLVLD  110 (126)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSS-EEEEEEEEECEEEEE---TTE--EEEECTTEEEEECTTCCEEEECCTT-CEEEEE
T ss_pred             CCCeEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEECCC-CEEEEE
Confidence            336899999999999999999975 899999999999986   454  6899999999999999999999987 788887


Q ss_pred             EeeCC
Q 040384          169 SFNSQ  173 (224)
Q Consensus       169 ~~~s~  173 (224)
                      ++...
T Consensus       111 v~~p~  115 (126)
T 4e2g_A          111 IFSPP  115 (126)
T ss_dssp             EEESC
T ss_pred             EECCC
Confidence            77643

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.30  E-value=1.5e-11  Score=92.98  Aligned_cols=77  Identities=17%  Similarity=0.256  Sum_probs=65.3

Q ss_pred             ccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           88 NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        88 ~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      ++.++.+.++.++||+..++|||+. .|++||++|++++.+   +++  .+.|++||.+++|+|..|.+.|.++....++
T Consensus        32 ~~~~~~v~~~~l~~G~~~~~H~H~~-~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~  105 (114)
T 3fjs_A           32 KEHRLEVMRMVLPAGKQVGSHSVAG-PSTIQCLEGEVEIGV---DGA--QRRLHQGDLLYLGAGAAHDVNAITNTSLLVT  105 (114)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSS-CEEEEEEESCEEEEE---TTE--EEEECTTEEEEECTTCCEEEEESSSEEEEEE
T ss_pred             eCCCEEEEEEEECCCCccCceeCCC-cEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEeCCCcEEEEE
Confidence            3447899999999999999999975 799999999999986   455  6899999999999999999999876555544


Q ss_pred             EEe
Q 040384          168 PSF  170 (224)
Q Consensus       168 ~~~  170 (224)
                      .++
T Consensus       106 ~v~  108 (114)
T 3fjs_A          106 VVL  108 (114)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            433

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.30  E-value=1.5e-11  Score=95.30  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=67.5

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      +..+.+.++.++||+..++|+|++..|++||++|++++.+   +++  ...|++||++++|+|..|++.|.+++++.++.
T Consensus        54 ~~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~  128 (133)
T 1o4t_A           54 NKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK--DVPIKAGDVCFTDSGESHSIENTGNTDLEFLA  128 (133)
T ss_dssp             TSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCEEEEECCSSSCEEEEE
T ss_pred             CceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCE--EEEeCCCcEEEECCCCcEEeEECCCCCEEEEE
Confidence            4457888999999999999999766899999999999876   454  68999999999999999999999999988776


Q ss_pred             Ee
Q 040384          169 SF  170 (224)
Q Consensus       169 ~~  170 (224)
                      +.
T Consensus       129 v~  130 (133)
T 1o4t_A          129 VI  130 (133)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.28  E-value=1.1e-11  Score=101.20  Aligned_cols=80  Identities=21%  Similarity=0.261  Sum_probs=70.7

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .|..+.+++++||+..++|.|. ..|++||++|++++.+-  +++  .+.|++||.+ +|+|..|.+.|.|+++++++.+
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H~-~eE~~~VLeGel~l~ld--~ge--~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V  150 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRTN-SIDYGIVLEGEIELELD--DGA--KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFI  150 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCCS-EEEEEEEEESCEEEECG--GGC--EEEECTTCEE-EECSCCBEEECCSSSCEEEEEE
T ss_pred             CCeEEEEEEECCCCCCCCeecC-ceEEEEEEeCEEEEEEC--CCe--EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEE
Confidence            4889999999999999999994 57999999999999862  134  5899999999 9999999999999999999998


Q ss_pred             eeCCCC
Q 040384          170 FNSQLP  175 (224)
Q Consensus       170 ~~s~~p  175 (224)
                      +....|
T Consensus       151 ~~P~~p  156 (172)
T 3es1_A          151 LIEAPA  156 (172)
T ss_dssp             EEECCC
T ss_pred             EcCCCc
Confidence            876666

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.28  E-value=2.4e-11  Score=97.33  Aligned_cols=78  Identities=17%  Similarity=0.147  Sum_probs=69.9

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .++.+.+..++||+..++|||+ ..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+++++.++++
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~v~v---~g~--~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i  115 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHA-HVHAVMIHRGHGQCLV---GET--ISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCV  115 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCS-SCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEEECCCCccCceeCC-CcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            4788999999999999999996 5799999999999986   455  689999999999999999999999999999888


Q ss_pred             eeCC
Q 040384          170 FNSQ  173 (224)
Q Consensus       170 ~~s~  173 (224)
                      ++..
T Consensus       116 ~~~~  119 (156)
T 3kgz_A          116 VNAA  119 (156)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            7644

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.27  E-value=2.8e-11  Score=97.93  Aligned_cols=78  Identities=15%  Similarity=0.138  Sum_probs=69.6

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .++.+.++.+.||+..++|||+. .|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+++++.++++
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~~~v---~g~--~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i  124 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQH-AHGVMILKGRGHAMV---GRA--VSAVAPYDLVTIPGWSWHQFRAPADEALGFLCM  124 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEECCTTSCEEEEEE
T ss_pred             CeEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            47888999999999999999964 799999999999876   455  689999999999999999999999999998888


Q ss_pred             eeCC
Q 040384          170 FNSQ  173 (224)
Q Consensus       170 ~~s~  173 (224)
                      +...
T Consensus       125 ~~~~  128 (166)
T 3jzv_A          125 VNAE  128 (166)
T ss_dssp             EESS
T ss_pred             EccC
Confidence            7643

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.26  E-value=2.9e-11  Score=90.89  Aligned_cols=73  Identities=19%  Similarity=0.329  Sum_probs=64.1

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEE-EECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSK-VVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~-~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ++.+.++.+.||+..++|||+ ..|++||++|++++.+   +++  .. .+++||++++|+|..|...|.+++++.++.+
T Consensus        26 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i---~~~--~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i   99 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTL---EDQ--EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVV   99 (117)
T ss_dssp             SCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEE---TTS--CCEEEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCCEeCC-CcEEEEEEeCEEEEEE---CCE--EEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            567888999999999999994 6899999999999886   343  36 9999999999999999999999888887766

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.26  E-value=4.6e-11  Score=87.95  Aligned_cols=80  Identities=14%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             eEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEee-CCCCcceehhh---hhhcCCCCCCHHHHHhhcCCCHHHHHH
Q 040384          134 VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN-SQLPGTQFVHS---SLFNTTPPIPNEVLTKTFLVGDEVINA  209 (224)
Q Consensus       134 ~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~-s~~pg~~~~~~---~lf~~~p~~p~evla~af~v~~~~v~~  209 (224)
                      +.+...|++||+++||+|++....+..  ++.++++-. .+++..+.+++   +++++   +|.|+++.+|+++.+++++
T Consensus         4 ~~~~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tna~~~~~~~LAG~~~Svl~~---l~~evla~aF~~s~ee~~~   78 (93)
T 1dgw_Y            4 RRYAATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVNAENNERNFLAGHKENVIRQ---IPRQVSDLTFPGSGEEVEE   78 (93)
T ss_dssp             EEEEEEECTTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSTTBSTTT---SCHHHHHHHSSSCTHHHHH
T ss_pred             chhhceecCCcEEEECCCCceeEEecC--CeEEEEEEecCCCCeeeeccCCcccHHHh---CCHHHHHHHcCCCHHHHHH
Confidence            345789999999999999999998764  488888744 44888888864   89997   9999999999999999999


Q ss_pred             HHhccCCCc
Q 040384          210 IKAAITSAQ  218 (224)
Q Consensus       210 l~~~~~~~~  218 (224)
                      |+..+.+..
T Consensus        79 l~~~q~e~~   87 (93)
T 1dgw_Y           79 LLENQKESY   87 (93)
T ss_dssp             HTTSCCCCS
T ss_pred             HHhcCCCce
Confidence            999987764

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.26  E-value=4.8e-11  Score=89.18  Aligned_cols=75  Identities=25%  Similarity=0.354  Sum_probs=65.2

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      ++.+.++.+.||+..++|+|+ ..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+  ++.++.++
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~v~  104 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHR-HSQVSYVVEGEFHVNV---DGV--IKVLTAGDSFFVPPHVDHGAVCPT--GGILIDTF  104 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCS-SEEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEEESS--CEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCcEECC-cceEEEEEeeEEEEEE---CCE--EEEeCCCCEEEECcCCceeeEeCC--CcEEEEEE
Confidence            588999999999999999996 6899999999999886   455  689999999999999999999987  56777776


Q ss_pred             eCC
Q 040384          171 NSQ  173 (224)
Q Consensus       171 ~s~  173 (224)
                      ...
T Consensus       105 ~p~  107 (116)
T 2pfw_A          105 SPA  107 (116)
T ss_dssp             ESC
T ss_pred             CCc
Confidence            544

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.25  E-value=6.1e-11  Score=96.98  Aligned_cols=82  Identities=11%  Similarity=0.097  Sum_probs=68.0

Q ss_pred             CccccEEEEEEEEeCCcccC---ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec-CCc
Q 040384           87 VNTQGISTNRVDLAVGGINP---PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV-GKE  162 (224)
Q Consensus        87 l~~~gis~~rv~l~pgg~~~---pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~-G~~  162 (224)
                      ..+..+.+.++.+.||+..+   +|+|+. .|++||++|++++.+-+ ++....+.|++||.+++|++..|.+.|. +++
T Consensus       112 ~~~~~~~~~~~~~~pg~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~~~-~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~~~  189 (198)
T 2bnm_A          112 KRAPSLVPLVVDVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGD-KENPKEALLPTGASMFVEEHVPHAFTAAKGTG  189 (198)
T ss_dssp             TTSTTCEEEEEEECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESC-TTSCEEEEECTTCEEEECTTCCEEEEESTTSC
T ss_pred             CCCCcceEEEEEEcCCCCCcccccccCCC-eEEEEEEeeeEEEEECC-cCCcccEEECCCCEEEeCCCCceEEEecCCCC
Confidence            44457889999999999877   699965 89999999999998722 1122368999999999999999999999 999


Q ss_pred             cEEEEEEe
Q 040384          163 NVLFFPSF  170 (224)
Q Consensus       163 ~a~~~~~~  170 (224)
                      ++.++.++
T Consensus       190 ~~~~l~v~  197 (198)
T 2bnm_A          190 SAKLIAVN  197 (198)
T ss_dssp             CEEEEEEE
T ss_pred             CeEEEEEe
Confidence            99887764

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.24  E-value=5.8e-11  Score=91.26  Aligned_cols=78  Identities=18%  Similarity=0.141  Sum_probs=59.3

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .+.+.++.++||+..++|+|+...|++||++|++++.+   ++ +  ...+++||++++|+|..|.+.|.+++ ..++.+
T Consensus        42 ~~~~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~---~~~~--~~~l~~Gd~~~ip~g~~H~~~~~~~~-~~~l~~  115 (134)
T 2o8q_A           42 GAHVIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEY---EDIG--AVMLEAGGSAFQPPGVRHRELRHSDD-LEVLEI  115 (134)
T ss_dssp             EEEEEEECC-----CCCEEECCSCEEEEEEESEEEEEE---TTTE--EEEEETTCEEECCTTCCEEEEEECTT-CEEEEE
T ss_pred             EEEEEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEE---CCcE--EEEecCCCEEEECCCCcEEeEeCCCC-eEEEEE
Confidence            34566777778999999999776899999999999886   34 4  68999999999999999999998774 566666


Q ss_pred             eeCCC
Q 040384          170 FNSQL  174 (224)
Q Consensus       170 ~~s~~  174 (224)
                      +....
T Consensus       116 ~~p~~  120 (134)
T 2o8q_A          116 VSPAG  120 (134)
T ss_dssp             ESSTT
T ss_pred             ECCCc
Confidence            65443

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.24  E-value=5.9e-11  Score=90.30  Aligned_cols=75  Identities=24%  Similarity=0.312  Sum_probs=66.0

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ..+.+.+..+.||...++||| +..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+++++.++++
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H-~~~Ei~~v~~G~~~~~i---~~~--~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i  105 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSH-NEYELFIVIQGNAIIRI---NDE--DFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI  105 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCC-SSEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             CCcEEEEEEECCCCccCCEec-CCeEEEEEEeCEEEEEE---CCE--EEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            357888999999999999999 57899999999999887   455  689999999999999999999999888877654


Q ss_pred             e
Q 040384          170 F  170 (224)
Q Consensus       170 ~  170 (224)
                      .
T Consensus       106 ~  106 (128)
T 4i4a_A          106 W  106 (128)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.23  E-value=3.5e-11  Score=92.12  Aligned_cols=77  Identities=18%  Similarity=0.251  Sum_probs=67.7

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ..++.+.++.++||+..++|+|+ ..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+++++.++.
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~  118 (126)
T 1vj2_A           45 APNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLK---EQG--EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLC  118 (126)
T ss_dssp             CSSEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             CCCEEEEEEEECCCCcCCceeCC-CcEEEEEEEeEEEEEE---CCE--EEEECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            44789999999999999999996 6899999999999876   344  58999999999999999999999988888876


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      ++.
T Consensus       119 v~~  121 (126)
T 1vj2_A          119 LIP  121 (126)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            653

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.23  E-value=2.8e-11  Score=92.11  Aligned_cols=78  Identities=18%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             cccEEEEEEEEeCCcccC-ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           89 TQGISTNRVDLAVGGINP-PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      ..++.+.+..+.||+..+ +|||+...+++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+++++.++
T Consensus        23 ~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~   97 (125)
T 3cew_A           23 LTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DGE--KIELQAGDWLRIAPDGKRQISAASDSPIGFL   97 (125)
T ss_dssp             CSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TTE--EEEEETTEEEEECTTCCEEEEEBTTBCEEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence            446788889999999988 8999654345559999999886   455  6899999999999999999999998888877


Q ss_pred             EEee
Q 040384          168 PSFN  171 (224)
Q Consensus       168 ~~~~  171 (224)
                      .+.-
T Consensus        98 ~i~~  101 (125)
T 3cew_A           98 CIQV  101 (125)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6654

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.22  E-value=9.8e-11  Score=92.34  Aligned_cols=77  Identities=19%  Similarity=0.244  Sum_probs=68.1

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEE-EEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYS-KVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~-~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .++.+.++.++||+..++|+|+. .|++||++|++++.+   +++  . ..+++||++++|+|..|+..|.+++++.+++
T Consensus        46 ~~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~---~~~--~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~  119 (147)
T 2f4p_A           46 FNTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQE---RGK--PARILKKGDVVEIPPNVVHWHGAAPDEELVHIG  119 (147)
T ss_dssp             SSCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEE---TTS--CCEEEETTCEEEECTTCCEEEEEBTTBCEEEEE
T ss_pred             CcEEEEEEEECCCCccCceECCC-ceEEEEEeCEEEEEE---CCE--EEEEECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            47899999999999999999976 899999999999886   344  4 7999999999999999999999999998887


Q ss_pred             EeeC
Q 040384          169 SFNS  172 (224)
Q Consensus       169 ~~~s  172 (224)
                      ++..
T Consensus       120 v~~~  123 (147)
T 2f4p_A          120 ISTQ  123 (147)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            7653

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.19  E-value=7.2e-11  Score=101.33  Aligned_cols=78  Identities=14%  Similarity=0.139  Sum_probs=66.6

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC-ccEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK-ENVLFF  167 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~-~~a~~~  167 (224)
                      ...+.+.++.++||+..+.|||+...|++||++|++++.+   +++  ...|++||++++|+|..|++.|.|+ +++.++
T Consensus       176 ~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i---~~~--~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l  250 (261)
T 1rc6_A          176 GFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL---DNN--WIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYI  250 (261)
T ss_dssp             TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES---SSC--EEEEETTCEEEECSSEEEEEEEC----CEEEE
T ss_pred             CCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCcCEEEE
Confidence            4468899999999999999999878899999999999886   344  6899999999999999999999999 998888


Q ss_pred             EEee
Q 040384          168 PSFN  171 (224)
Q Consensus       168 ~~~~  171 (224)
                      .+.+
T Consensus       251 ~~~d  254 (261)
T 1rc6_A          251 YSKD  254 (261)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7655

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.17  E-value=2.2e-10  Score=85.35  Aligned_cols=74  Identities=19%  Similarity=0.269  Sum_probs=62.5

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      +.++.+.++.+.||+..++|+|+ ..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.++  +.++.
T Consensus        37 ~~~~~~~~~~~~~g~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~--~~~~~  108 (115)
T 1yhf_A           37 RQDLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQE--TYRVAEGQTIVMPAGIPHALYAVEA--FQMLL  108 (115)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTSCEEEEESSC--EEEEE
T ss_pred             CCceEEEEEEECCCCccCCEECC-CcEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCC--ceEEE
Confidence            34678899999999999999996 5799999999999876   455  5899999999999999999999873  55444


Q ss_pred             Ee
Q 040384          169 SF  170 (224)
Q Consensus       169 ~~  170 (224)
                      ++
T Consensus       109 v~  110 (115)
T 1yhf_A          109 VV  110 (115)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.15  E-value=2.5e-10  Score=102.60  Aligned_cols=90  Identities=16%  Similarity=-0.007  Sum_probs=74.0

Q ss_pred             CCceEEEeecc-cCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC
Q 040384           72 FGRAVTEGNVH-EFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR  150 (224)
Q Consensus        72 ~g~~~~~~~~~-~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~  150 (224)
                      .|+.+..++.. ..+.++++  ++....|+||++.++|||+.+ |+.||++|++++.+   +++  +..+++||++++|+
T Consensus       249 ~G~~~~~~np~t~~~~~~ti--~~~~~~l~pG~~~~~H~h~~~-ev~~v~~G~g~~~v---~~~--~~~~~~GD~~~vP~  320 (354)
T 2d40_A          249 DGYKMRYVNPVTGGYPMPSM--GAFLQLLPKGFASRVARTTDS-TIYHVVEGSGQVII---GNE--TFSFSAKDIFVVPT  320 (354)
T ss_dssp             TBEEEEECCTTTSSCSSSSC--EEEEEEECTTCBCCCBEESSC-EEEEEEEEEEEEEE---TTE--EEEEETTCEEEECT
T ss_pred             CCeEEEEeCCCcCCCCCCcc--eeEEEEECCCCCCCceecCCc-EEEEEEeCeEEEEE---CCE--EEEEcCCCEEEECC
Confidence            46677777743 67777765  455669999999999999876 99999999999987   454  68999999999999


Q ss_pred             CCeeEEEecCCccEEEEEEee
Q 040384          151 GLVHFQLNVGKENVLFFPSFN  171 (224)
Q Consensus       151 G~~H~~~N~G~~~a~~~~~~~  171 (224)
                      +..|...|.  +++.++++.+
T Consensus       321 ~~~H~~~n~--e~~~l~~~~d  339 (354)
T 2d40_A          321 WHGVSFQTT--QDSVLFSFSD  339 (354)
T ss_dssp             TCCEEEEEE--EEEEEEEEES
T ss_pred             CCeEEEEeC--CCEEEEEEcC
Confidence            999999994  6777777644

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.15  E-value=1.8e-10  Score=93.91  Aligned_cols=77  Identities=18%  Similarity=0.095  Sum_probs=64.8

Q ss_pred             ccccEEEEEEEEeCCcccC--ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEE
Q 040384           88 NTQGISTNRVDLAVGGINP--PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVL  165 (224)
Q Consensus        88 ~~~gis~~rv~l~pgg~~~--pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~  165 (224)
                      .+..+.+.+++++||+..+  +|+| ...|++||++|++++.+   +++  ...|++||.+++|+|..|++.|.+++++ 
T Consensus       100 ~~~~~~~~~~~~~pg~~~~~~~H~h-~~~E~~~Vl~G~~~~~~---~~~--~~~l~~GD~i~i~~~~~H~~~n~~~~~~-  172 (192)
T 1y9q_A          100 ADTGLEIFEITLLDHHQQMSSPHAL-GVIEYIHVLEGIMKVFF---DEQ--WHELQQGEHIRFFSDQPHGYAAVTEKAV-  172 (192)
T ss_dssp             TTTTEEEEEEEECTTCEEEECCCST-TCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEEECSSSEEEEESSSCEE-
T ss_pred             CCCcEEEEEEEECCCCCccCCCCCC-CCEEEEEEEEeEEEEEE---CCE--EEEeCCCCEEEEcCCCCeEeECCCCCcE-
Confidence            3446889999999999876  6777 45799999999999876   454  6899999999999999999999999888 


Q ss_pred             EEEEee
Q 040384          166 FFPSFN  171 (224)
Q Consensus       166 ~~~~~~  171 (224)
                      ++.++.
T Consensus       173 ~l~v~~  178 (192)
T 1y9q_A          173 FQNIVA  178 (192)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            666553

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.15  E-value=1.9e-10  Score=93.25  Aligned_cols=74  Identities=20%  Similarity=0.132  Sum_probs=64.7

Q ss_pred             cEEEEEEEEeC-CcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           91 GISTNRVDLAV-GGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      -+....++++| |+...+|.|.++.|++||++|++.+.+   +++  .+.|++||.+++|+|..|.+.|.++++++++.+
T Consensus        87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl---~g~--~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A           87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV---CKN--KFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEE---CCE--EEEEcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            46777899999 877778777689999999999999987   455  689999999999999999999999999987754

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.13  E-value=2.5e-10  Score=83.99  Aligned_cols=77  Identities=14%  Similarity=0.117  Sum_probs=62.5

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCce-EEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSES-SIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei-~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      +.++.+.++.+.||...++|+|+...|+ +||++|++++.+-  +++  ...+++||++++|+|..|.+.|.++  ..++
T Consensus        30 ~~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~--~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~--~~~l  103 (110)
T 2q30_A           30 SENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGD--GDA--VIPAPRGAVLVAPISTPHGVRAVTD--MKVL  103 (110)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECG--GGC--EEEECTTEEEEEETTSCEEEEESSS--EEEE
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeC--CCE--EEEECCCCEEEeCCCCcEEEEEcCC--cEEE
Confidence            3467888999999999999999755688 8999999998751  134  5899999999999999999999875  4455


Q ss_pred             EEee
Q 040384          168 PSFN  171 (224)
Q Consensus       168 ~~~~  171 (224)
                      .++.
T Consensus       104 ~~~~  107 (110)
T 2q30_A          104 VTIA  107 (110)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            5543

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.11  E-value=3.9e-10  Score=95.85  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=68.3

Q ss_pred             cEEEEEEEEeC-CcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           91 GISTNRVDLAV-GGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      -+.+..+.++| |+..++|||+. .|++||++|++++.+   +++  ...+++||.+++|+|..|.+.|.|++++.++.+
T Consensus       144 ~~~~~~~~~~p~g~~~~~H~H~~-~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v  217 (243)
T 3h7j_A          144 WVEIMLAKIPGNGGEMPFHKHRN-EQIGICIGGGYDMTV---EGC--TVEMKFGTAYFCEPREDHGAINRSEKESKSINI  217 (243)
T ss_dssp             TEEEEEEEECTTTEEEEEECCSS-EEEEEECSSCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             eeEEEEEEECCCCCcCCCEeCCC-cEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            35677788999 88999999975 799999999999886   454  678999999999999999999999999999988


Q ss_pred             eeCCCC
Q 040384          170 FNSQLP  175 (224)
Q Consensus       170 ~~s~~p  175 (224)
                      +.....
T Consensus       218 ~~p~~~  223 (243)
T 3h7j_A          218 FFPPRY  223 (243)
T ss_dssp             EESCSS
T ss_pred             EcCChh
Confidence            874443

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.11  E-value=5.3e-10  Score=98.14  Aligned_cols=79  Identities=16%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ..+++.++.+.||+..++|||++..|++||++|++++.+   +++  ...|++||++++|+|..|.+.|.++ ++.++.+
T Consensus        44 ~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~~~~  117 (337)
T 1y3t_A           44 DLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DGE--RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSY  117 (337)
T ss_dssp             SSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECST-TEEEEEE
T ss_pred             CeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEECCC-CeEEEEE
Confidence            368899999999999999999768999999999999986   455  5899999999999999999999987 5877777


Q ss_pred             eeCCC
Q 040384          170 FNSQL  174 (224)
Q Consensus       170 ~~s~~  174 (224)
                      ++...
T Consensus       118 ~~p~~  122 (337)
T 1y3t_A          118 TMKGN  122 (337)
T ss_dssp             EETTS
T ss_pred             ECCCC
Confidence            66443

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.10  E-value=2.1e-10  Score=103.14  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=67.4

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+.+....+.||+..++|+|+ ..|++||++|++++..++  ++  ...+++||++++|+|..|...|.+++++.++.+.
T Consensus        99 ~l~~~~~~l~PG~~~~~H~H~-~~e~~yVl~G~g~~t~v~--g~--~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~  173 (354)
T 2d40_A           99 TLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAVD--GE--RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL  173 (354)
T ss_dssp             SCEEEEEEECTTCEEEEEEES-SCEEEEEEECSSCEEEET--TE--EEECCTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             cEEEEEEEECCCCCcCCeecC-cceEEEEEEEEEEEEEEC--CE--EEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            678999999999999999995 679999999999885553  54  6899999999999999999999999999888776


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      +
T Consensus       174 d  174 (354)
T 2d40_A          174 D  174 (354)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.09  E-value=5.6e-10  Score=85.38  Aligned_cols=73  Identities=18%  Similarity=0.117  Sum_probs=60.5

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+++..+.++||+-.  |||....|++||++|++++.+   +++  ...|++||+++||+|..|++.|.+ +++.++.+.
T Consensus        39 ~~~~~~~~~~pG~~~--~~H~~~~E~~~Vl~G~~~~~~---~g~--~~~l~~GD~v~ip~g~~H~~~~~~-~~~~~l~v~  110 (119)
T 3lwc_A           39 PITIGYGRYAPGQSL--TETMAVDDVMIVLEGRLSVST---DGE--TVTAGPGEIVYMPKGETVTIRSHE-EGALTAYVT  110 (119)
T ss_dssp             CCEEEEEEECTTCEE--EEECSSEEEEEEEEEEEEEEE---TTE--EEEECTTCEEEECTTCEEEEEEEE-EEEEEEEEE
T ss_pred             CEEEEEEEECCCCCc--CccCCCCEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCEEEEEcCC-CCeEEEEEE
Confidence            578889999999865  566678899999999999987   455  689999999999999999998875 566666554


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      .
T Consensus       111 ~  111 (119)
T 3lwc_A          111 Y  111 (119)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.08  E-value=1.1e-09  Score=94.66  Aligned_cols=76  Identities=16%  Similarity=0.233  Sum_probs=67.2

Q ss_pred             ccEEEEEEEEeCCcccCc-eecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC-ccEEEE
Q 040384           90 QGISTNRVDLAVGGINPP-HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK-ENVLFF  167 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~-~~a~~~  167 (224)
                      ..+.+.++.++||+..+. |||+ ..|++||++|++++.+   +++  ...|++||++++|++..|++.|.++ +++.++
T Consensus       180 ~~~~~~~~~l~pg~~~~~~H~H~-~~E~~yVl~G~~~~~i---~~~--~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l  253 (274)
T 1sef_A          180 FDMNMHILSFEPGASHAYIETHV-QEHGAYLISGQGMYNL---DNE--WYPVEKGDYIFMSAYVPQAAYAVGREEPLMYV  253 (274)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCCS-CCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEECSSSCEEEE
T ss_pred             CCEEEEEEEECCCCccCcceecc-CeEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEeCCCCCCEEEE
Confidence            478899999999999988 9995 5899999999999987   455  6899999999999999999999998 888877


Q ss_pred             EEee
Q 040384          168 PSFN  171 (224)
Q Consensus       168 ~~~~  171 (224)
                      ...+
T Consensus       254 ~~~~  257 (274)
T 1sef_A          254 YSKD  257 (274)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6644

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.06  E-value=1.6e-09  Score=80.84  Aligned_cols=71  Identities=10%  Similarity=0.167  Sum_probs=59.4

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ++.+..+.+.||...++|||+ ..|++||++|++++.+   +++  ...|++||.+++|+|..|.+.|.+  ++.++.+
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h~-~~e~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~i~~~~~H~~~~~~--~~~~~~i  107 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEYF-GDTLYLILQGEAVITF---DDQ--KIDLVPEDVLMVPAHKIHAIAGKG--RFKMLQI  107 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCCS-SCEEEEEEEEEEEEEE---TTE--EEEECTTCEEEECTTCCBEEEEEE--EEEEEEE
T ss_pred             CceEEEEEECCCCccccEECC-CCeEEEEEeCEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEeCC--CcEEEEE
Confidence            456777888999999999996 5899999999999886   454  689999999999999999999863  4555443

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.03  E-value=2.6e-09  Score=93.70  Aligned_cols=75  Identities=15%  Similarity=0.107  Sum_probs=62.5

Q ss_pred             EEEEEEeC-CcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeC
Q 040384           94 TNRVDLAV-GGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNS  172 (224)
Q Consensus        94 ~~rv~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s  172 (224)
                      ...+.+.| |...++|||++..|++||++|++++.+   +++  ...|++||++++|++..|++.|.++ ++.++.+++.
T Consensus       219 ~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i---~~~--~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~  292 (337)
T 1y3t_A          219 IVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DGQ--EIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVP  292 (337)
T ss_dssp             EEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred             EEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcC
Confidence            34456656 567789999867899999999999987   454  6899999999999999999999998 8888888765


Q ss_pred             CC
Q 040384          173 QL  174 (224)
Q Consensus       173 ~~  174 (224)
                      ..
T Consensus       293 ~~  294 (337)
T 1y3t_A          293 GL  294 (337)
T ss_dssp             ST
T ss_pred             cc
Confidence            43

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.03  E-value=1.4e-09  Score=97.42  Aligned_cols=81  Identities=14%  Similarity=0.105  Sum_probs=64.2

Q ss_pred             cEEEEEEEEeCCcc-cC--ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           91 GISTNRVDLAVGGI-NP--PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        91 gis~~rv~l~pgg~-~~--pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .+++. ..+.|++. .+  +|||++..|++||++|++++.+-+.+|+...+.|++||++++|+|..|++.|.++++ .++
T Consensus        47 ~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l  124 (350)
T 1juh_A           47 AFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMT  124 (350)
T ss_dssp             SCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEE
T ss_pred             cEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEE
Confidence            45666 45556554 45  899987899999999999998866445445789999999999999999999998876 666


Q ss_pred             EEeeCC
Q 040384          168 PSFNSQ  173 (224)
Q Consensus       168 ~~~~s~  173 (224)
                      .++...
T Consensus       125 ~v~~p~  130 (350)
T 1juh_A          125 GVIVPG  130 (350)
T ss_dssp             EEEESS
T ss_pred             EEEcCc
Confidence            666543

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.01  E-value=1e-09  Score=81.11  Aligned_cols=66  Identities=15%  Similarity=0.213  Sum_probs=52.0

Q ss_pred             EEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           94 TNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        94 ~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      ..++.+.||. .++|+|+...|++||++|++++.+   ++ +  ...+++||++++|+|..|.+.|.+  ++.++
T Consensus        30 ~~~~~~~~g~-~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~--~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l   96 (107)
T 2i45_A           30 QFHLVKLLGD-YGWHTHGYSDKVLFAVEGDMAVDF---ADGG--SMTIREGEMAVVPKSVSHRPRSEN--GCSLV   96 (107)
T ss_dssp             EEEEEEEEEE-CCCBCC--CCEEEEESSSCEEEEE---TTSC--EEEECTTEEEEECTTCCEEEEEEE--EEEEE
T ss_pred             EEEEEECCCC-CcceeCCCCCEEEEEEeCEEEEEE---CCCc--EEEECCCCEEEECCCCcEeeEeCC--CeEEE
Confidence            4456677877 459999766899999999999886   33 4  689999999999999999999953  45544

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.99  E-value=2e-09  Score=78.09  Aligned_cols=64  Identities=25%  Similarity=0.392  Sum_probs=50.9

Q ss_pred             ccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384           88 NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus        88 ~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      ++..+++.++  .  +..++|||+...|++||++|++++.+   +++  ...+++||++++|+|..|...|.+
T Consensus        29 ~~~~~~~~~~--~--~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~   92 (102)
T 3d82_A           29 NDYQFKLVKV--E--GEFVWHEHADTDEVFIVMEGTLQIAF---RDQ--NITLQAGEMYVIPKGVEHKPMAKE   92 (102)
T ss_dssp             TTEEEEEEEE--E--EECCCBCCTTCCEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTCCBEEEEEE
T ss_pred             CCCEEEEEEE--C--CCCCceeCCCCcEEEEEEeCEEEEEE---CCE--EEEEcCCCEEEECCCCeEeeEcCC
Confidence            3334444444  3  45889999876899999999999876   344  589999999999999999999974

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.97  E-value=2.8e-09  Score=97.09  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=68.7

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe-cCCccEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN-VGKENVLFF  167 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N-~G~~~a~~~  167 (224)
                      +-.+.+....+.||+..++|.|.. .|+.||++|++....+  +|+  +..+++||++++|.|..|...| .|+++++++
T Consensus       120 t~~L~a~~~~l~PG~~~~~HrH~~-~ev~~IleG~G~~t~v--~G~--~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l  194 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGAHRHAA-SALRFIMEGSGAYTIV--DGH--KVELGANDFVLTPNGTWHEHGILESGTECIWQ  194 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCCEEESS-CEEEEEEECSCEEEEE--TTE--EEEECTTCEEEECTTCCEEEEECTTCCCEEEE
T ss_pred             CCeeEEEEEEECCCCCcCCccCCc-ceEEEEEEeeEEEEEE--CCE--EEEEcCCCEEEECcCCCEEEEcCCCCCCEEEE
Confidence            447899999999999999999965 6999999999966444  465  6899999999999999999999 999999999


Q ss_pred             EEee
Q 040384          168 PSFN  171 (224)
Q Consensus       168 ~~~~  171 (224)
                      ++++
T Consensus       195 ~v~d  198 (394)
T 3bu7_A          195 DGLD  198 (394)
T ss_dssp             EEEC
T ss_pred             Eccc
Confidence            8765

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.97  E-value=2.1e-09  Score=91.32  Aligned_cols=74  Identities=16%  Similarity=0.150  Sum_probs=64.1

Q ss_pred             EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEE-ecCCCeeEEEecCCccEEEEEEe
Q 040384           92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFL-IPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~v-vP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      ..+.+..++||+..++|||+ ..|++||++|++++.+   +++  ...|++||.++ +|+|..|.+.|.++++++++.+.
T Consensus        34 ~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~~---~~~--~~~l~~Gd~i~~ip~~~~H~~~n~~~~~~~~l~i~  107 (243)
T 3h7j_A           34 TEVLMSYVPPHTNVEPHQHK-EVQIGMVVSGELMMTV---GDV--TRKMTALESAYIAPPHVPHGARNDTDQEVIAIDIK  107 (243)
T ss_dssp             EEEEEEEECTTEEEEEECCS-SEEEEEEEESEEEEEE---TTE--EEEEETTTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEECCCCccCCEECC-CcEEEEEEEeEEEEEE---CCE--EEEECCCCEEEEcCCCCcEeeEeCCCCcEEEEEEe
Confidence            46667789999999999997 6899999999999986   455  68999999885 99999999999999999887664


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      .
T Consensus       108 r  108 (243)
T 3h7j_A          108 R  108 (243)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.97  E-value=6.6e-09  Score=88.55  Aligned_cols=77  Identities=14%  Similarity=0.179  Sum_probs=67.5

Q ss_pred             cccEEEEEEEEeCCcccCc-eecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           89 TQGISTNRVDLAVGGINPP-HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      +..+.+.+++++||+..+. |.| ...|.+||++|++.+.+   +++  ...|++||++.++.+..|+++|.|+++++++
T Consensus       162 ~~~~~~~~~tl~PG~~~~~~~~h-~~ee~~~vLeG~~~~~~---~~~--~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl  235 (246)
T 1sfn_A          162 AFDFMVSTMSFAPGASLPYAEVH-YMEHGLLMLEGEGLYKL---EEN--YYPVTAGDIIWMGAHCPQWYGALGRNWSKYL  235 (246)
T ss_dssp             TCSEEEEEEEECTTCBCSSCBCC-SSCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             CCCeEEEEEEECCCCccCcccCC-CceEEEEEEECEEEEEE---CCE--EEEcCCCCEEEECCCCCEEEEcCCCCCEEEE
Confidence            5578999999999999986 556 56899999999999886   565  6799999999999999999999999999887


Q ss_pred             EEee
Q 040384          168 PSFN  171 (224)
Q Consensus       168 ~~~~  171 (224)
                      .+-|
T Consensus       236 ~~kd  239 (246)
T 1sfn_A          236 LYKD  239 (246)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6654

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.96  E-value=2.5e-09  Score=83.41  Aligned_cols=71  Identities=15%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+++..+.++||   ..|||....|++||++|++++.+   +++  ...|++||.+++|+|..|.+.|.  ++++++.++
T Consensus        56 ~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG~~~l~~---~g~--~~~l~~GD~i~~p~g~~h~~~~~--~~~~~l~v~  125 (133)
T 2pyt_A           56 SMAAGFMQWDNA---FFPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTP--TSVRFLYVA  125 (133)
T ss_dssp             SSEEEEEEEEEE---EEEEECSSEEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEEE--EEEEEEEEE
T ss_pred             cEEEEEEEECCC---CccccCCCCEEEEEEECEEEEEE---CCE--EEEECCCcEEEECCCCEEEEEeC--CCEEEEEEE
Confidence            578888999999   46777778999999999999886   455  57999999999999999999874  467766665


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      .
T Consensus       126 ~  126 (133)
T 2pyt_A          126 W  126 (133)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.96  E-value=9.7e-09  Score=93.55  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=66.4

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC-CccEEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG-KENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G-~~~a~~~~~  169 (224)
                      .+.+....++||+..++|.|. ..|++||++|++++.+   +++  +..+++||++++|+|..|...|.| ++++.++++
T Consensus       293 tl~~~~~~l~PG~~~~~HrH~-~~~v~~VleG~G~~~V---~ge--~~~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i  366 (394)
T 3bu7_A          293 TMGASMQMLRPGEHTKAHRHT-GNVIYNVAKGQGYSIV---GGK--RFDWSEHDIFCVPAWTWHEHCNTQERDDACLFSF  366 (394)
T ss_dssp             SCEEEEEEECTTCBCCCEEES-SCEEEEEEECCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECCSSCCEEEEEE
T ss_pred             eeeEEEEEECCCCcCCCcccC-CcEEEEEEeCeEEEEE---CCE--EEEEeCCCEEEECCCCeEEeEeCCCCCCeEEEEe
Confidence            578889999999999999996 5699999999998776   455  689999999999999999999998 788888877


Q ss_pred             ee
Q 040384          170 FN  171 (224)
Q Consensus       170 ~~  171 (224)
                      .+
T Consensus       367 ~D  368 (394)
T 3bu7_A          367 ND  368 (394)
T ss_dssp             ES
T ss_pred             eC
Confidence            54

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.96  E-value=4.1e-09  Score=79.32  Aligned_cols=80  Identities=15%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             ccccEEEEEEEEeCCcccCce--ecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCc-cE
Q 040384           88 NTQGISTNRVDLAVGGINPPH--LHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKE-NV  164 (224)
Q Consensus        88 ~~~gis~~rv~l~pgg~~~pH--~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~-~a  164 (224)
                      ++.++.+.++. .+|...+++  +|....|++||++|++++.+   +++.....|++||.+++|+|..|.+.|.+++ ++
T Consensus        27 ~~~~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~---~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~  102 (112)
T 2opk_A           27 ERKGLKIERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIEC---EGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPT  102 (112)
T ss_dssp             EETTEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEE---TTCSSCEEECTTEEEEECTTCCEEEEEECSSSCE
T ss_pred             cCCCEEEEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEE---CCEEEEEEECCCCEEEECCCCcEEEEeCCCCCCE
Confidence            44467777775 556555552  34467899999999999987   3331117999999999999999999999976 56


Q ss_pred             EEEEEee
Q 040384          165 LFFPSFN  171 (224)
Q Consensus       165 ~~~~~~~  171 (224)
                      ++++++.
T Consensus       103 ~~l~v~~  109 (112)
T 2opk_A          103 VWLAVHC  109 (112)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6676654

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.95  E-value=1.8e-09  Score=97.56  Aligned_cols=78  Identities=15%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      -.+.+....+.||+..++|.|. ..|+.||++|++....+  +|+  +..+++||++++|.|..|...|.|+++++++.+
T Consensus       101 ~~L~a~~~~l~PG~~~~~HrH~-~~ev~~VleG~G~~~~v--dG~--~~~~~~GD~v~iP~g~~H~~~N~gde~l~~l~v  175 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPEHRHS-QNAFRFVVEGEGVWTVV--NGD--PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDG  175 (368)
T ss_dssp             SSCEEEEEEECTTCEEEEEEES-SCEEEECSSCEEEEEEE--TTE--EEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             CceEEEEEEECCCCccCceecc-cceEEEEEecceEEEEE--CCE--EEEEeCCCEEEECCCCcEEeEeCCCCCeEEEEe
Confidence            4688999999999999999996 57999999999953333  465  689999999999999999999999999999988


Q ss_pred             eeC
Q 040384          170 FNS  172 (224)
Q Consensus       170 ~~s  172 (224)
                      +|.
T Consensus       176 ~D~  178 (368)
T 3nw4_A          176 LDI  178 (368)
T ss_dssp             ECH
T ss_pred             cch
Confidence            763

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.95  E-value=2.3e-09  Score=93.21  Aligned_cols=77  Identities=18%  Similarity=0.185  Sum_probs=66.2

Q ss_pred             cccEEEEEEEEeCCccc--CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEE
Q 040384           89 TQGISTNRVDLAVGGIN--PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLF  166 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~--~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~  166 (224)
                      +..+.+.+++++||+..  +.|.| ...|++||++|++++.+   +++  ...|++||.+++|+|..|.+.|.|++++.+
T Consensus        65 ~~~~~~~~~~l~PG~~~~~~~h~H-~~eE~~~Vl~G~l~v~v---~g~--~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~  138 (278)
T 1sq4_A           65 AETFSQYIVELAPNGGSDKPEQDP-NAEAVLFVVEGELSLTL---QGQ--VHAMQPGGYAFIPPGADYKVRNTTGQHTRF  138 (278)
T ss_dssp             CCSCEEEEEEEEEEEEESSCCCCT-TEEEEEEEEESCEEEEE---SSC--EEEECTTEEEEECTTCCEEEECCSSSCEEE
T ss_pred             CCcEEEEEEEECCCCccCCCCcCC-CceEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEECCCCCEEE
Confidence            34689999999999877  45778 46899999999999987   344  689999999999999999999999999988


Q ss_pred             EEEee
Q 040384          167 FPSFN  171 (224)
Q Consensus       167 ~~~~~  171 (224)
                      +.+..
T Consensus       139 l~v~~  143 (278)
T 1sq4_A          139 HWIRK  143 (278)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77664

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.92  E-value=3.1e-09  Score=91.08  Aligned_cols=77  Identities=17%  Similarity=0.151  Sum_probs=66.1

Q ss_pred             ccEEEEEEEEeCCcccCceec-CCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLH-PRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ..+.+.+++++||+....|.| +...|++||++|++++.+   +++  ...|++||.+++|++..|.+.|.|++++.++.
T Consensus        57 ~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~--~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~  131 (261)
T 1rc6_A           57 ASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGK--TFALSEGGYLYCPPGSLMTFVNAQAEDSQIFL  131 (261)
T ss_dssp             CSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCCCEEEECSSSCEEEEE
T ss_pred             CcEEEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEeCCCCCEEEEE
Confidence            357888999999998776655 456789999999999987   455  68999999999999999999999999998887


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      +..
T Consensus       132 v~~  134 (261)
T 1rc6_A          132 YKR  134 (261)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.92  E-value=5.9e-09  Score=83.66  Aligned_cols=70  Identities=16%  Similarity=0.211  Sum_probs=56.6

Q ss_pred             EEEEEEEEeCCcccCceecCCCCceEEEEe--CeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           92 ISTNRVDLAVGGINPPHLHPRSSESSIVIR--GTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~--G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      +++..+.+  ++..++|||+...|++||++  |++++.+   +++  .+.+++||+++||+|..|.+.  +  ++.++++
T Consensus        47 ~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~i---dge--~~~l~~GD~v~IPpg~~H~i~--g--~l~~L~I  115 (157)
T 4h7l_A           47 VSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIEL---NGQ--SYPLTKLLAISIPPLVRHRIV--G--EATIINI  115 (157)
T ss_dssp             CEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEE---TTE--EEECCTTEEEEECTTCCEEEE--S--CEEEEEE
T ss_pred             EEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEE---CCE--EEEeCCCCEEEECCCCeEeeE--C--CEEEEEE
Confidence            34444444  55668999988889999999  9999987   465  689999999999999999997  3  6888877


Q ss_pred             eeC
Q 040384          170 FNS  172 (224)
Q Consensus       170 ~~s  172 (224)
                      +..
T Consensus       116 ~~P  118 (157)
T 4h7l_A          116 VSP  118 (157)
T ss_dssp             EES
T ss_pred             ECC
Confidence            653

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.88  E-value=6.2e-09  Score=87.58  Aligned_cols=71  Identities=18%  Similarity=0.205  Sum_probs=60.7

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .+++..+.++||...++|+|+ ..|++||++|++++.+   +++  ...+++||.+++|+|..|++.|. .+++.++.
T Consensus       152 ~~~~~~~~~~~G~~~~~H~H~-~~e~~~Vl~G~~~~~i---~g~--~~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll  222 (227)
T 3rns_A          152 NLVMTIMSFWKGESLDPHKAP-GDALVTVLDGEGKYYV---DGK--PFIVKKGESAVLPANIPHAVEAE-TENFKMLL  222 (227)
T ss_dssp             TEEEEEEEECTTCEEEEECCS-SEEEEEEEEEEEEEEE---TTE--EEEEETTEEEEECTTSCEEEECC-SSCEEEEE
T ss_pred             CeEEEEEEECCCCccCCEECC-CcEEEEEEeEEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEeC-CCCEEEEE
Confidence            578899999999999999997 5799999999999986   455  68999999999999999999982 34455444

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.86  E-value=1.2e-08  Score=88.66  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=70.6

Q ss_pred             CCCccccEEEEEEEEeCCcccCc-eecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 040384           85 PGVNTQGISTNRVDLAVGGINPP-HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN  163 (224)
Q Consensus        85 P~l~~~gis~~rv~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~  163 (224)
                      |.-....+.+.+++++||+..+. |.| .-.|.+||++|++.+.+   +++  ...|++||++.++.|..|+++|.|+++
T Consensus       184 p~~~~~~~~~~~~~l~pG~~i~~~~~h-~~e~~~~il~G~~~~~~---~~~--~~~v~~GD~~~~~~~~~h~~~n~g~~~  257 (278)
T 1sq4_A          184 MSDMRHDMHVNIVNFEPGGVIPFAETH-VMEHGLYVLEGKAVYRL---NQD--WVEVEAGDFMWLRAFCPQACYSGGPGR  257 (278)
T ss_dssp             TTCTTCSEEEEEEEECSSSEESCCCCC-SEEEEEEEEECEEEEEE---TTE--EEEEETTCEEEEEESCCEEEECCSSSC
T ss_pred             CCCcCCCeEEEEEEECCCCCcCCCCCC-CccEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEEcCCCCC
Confidence            43345689999999999999996 556 55789999999999876   565  789999999999999999999999999


Q ss_pred             EEEEEEeeC
Q 040384          164 VLFFPSFNS  172 (224)
Q Consensus       164 a~~~~~~~s  172 (224)
                      ++++.+.|-
T Consensus       258 ~~yl~~~d~  266 (278)
T 1sq4_A          258 FRYLLYKDV  266 (278)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEc
Confidence            999988863

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.85  E-value=2.6e-08  Score=82.29  Aligned_cols=79  Identities=15%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             EEEEEEEeCCc----------ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384           93 STNRVDLAVGG----------INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKE  162 (224)
Q Consensus        93 s~~rv~l~pgg----------~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~  162 (224)
                      +...+.+.|+.          ..++|+|+. .|++||++|++.+.+.+.+++.+...+++||+++||+|..|+..+..+.
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~-~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~  153 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLD-EEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKN  153 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSS-CEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTC
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCc-ceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCC
Confidence            45556677765          348899976 7999999999999987654666678999999999999999999887666


Q ss_pred             cEEEEEEeeC
Q 040384          163 NVLFFPSFNS  172 (224)
Q Consensus       163 ~a~~~~~~~s  172 (224)
                      ....+-+|..
T Consensus       154 ~~~airlF~~  163 (191)
T 1vr3_A          154 YVKAMRLFVG  163 (191)
T ss_dssp             CEEEEEEESS
T ss_pred             CEEEEEEECC
Confidence            6777777753

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.84  E-value=6.9e-09  Score=89.66  Aligned_cols=77  Identities=12%  Similarity=0.067  Sum_probs=65.5

Q ss_pred             ccEEEEEEEEeCCcccCceec-CCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLH-PRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ..+.+.+++++||+....|.| +...|++||++|++++.+   +++  ...|++||.+++|++..|.+.|.|++++.++.
T Consensus        60 ~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~--~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~  134 (274)
T 1sef_A           60 ATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD---GQE--THELEAGGYAYFTPEMKMYLANAQEADTEVFL  134 (274)
T ss_dssp             CSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTSCCEEEESSSSCEEEEE
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEeCCCCCEEEEE
Confidence            357888999999998766554 456789999999999986   444  68999999999999999999999999998887


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      +..
T Consensus       135 v~~  137 (274)
T 1sef_A          135 YKK  137 (274)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            663

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.83  E-value=1.8e-08  Score=80.45  Aligned_cols=71  Identities=18%  Similarity=0.160  Sum_probs=57.4

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+++..+.+. ++  +.|||....|+.||++|++++.+   +|+  ...+++||.++||+|..|.+.|.  ++++++.+.
T Consensus        65 ~~s~g~~~~e-~~--~~~~~~~~eE~~yVLeG~~~l~i---~g~--~~~l~~GD~i~iP~G~~h~~~n~--~~a~~l~V~  134 (151)
T 4axo_A           65 RLGCGMMEMK-ET--TFDWTLNYDEIDYVIDGTLDIII---DGR--KVSASSGELIFIPKGSKIQFSVP--DYARFIYVT  134 (151)
T ss_dssp             SCEEEEEEEE-EE--EEEEECSSEEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEEE--EEEEEEEEE
T ss_pred             cEEEEEEEEc-Cc--cccEeCCCcEEEEEEEeEEEEEE---CCE--EEEEcCCCEEEECCCCEEEEEeC--CCEEEEEEE
Confidence            4666677776 33  35788788999999999999986   455  68999999999999999999997  567776665


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      .
T Consensus       135 ~  135 (151)
T 4axo_A          135 Y  135 (151)
T ss_dssp             E
T ss_pred             C
Confidence            4

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.82  E-value=4.8e-08  Score=84.63  Aligned_cols=77  Identities=12%  Similarity=0.181  Sum_probs=67.6

Q ss_pred             cccEEEEEEEEeCCcccCc-eecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           89 TQGISTNRVDLAVGGINPP-HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      ..++.+.+++++||+..+. |.|. ..|.+||++|++.+.+   +++  ...+++||++.++++..|+++|.|++++.++
T Consensus       183 ~~d~~~~~~t~~PG~~~p~~e~H~-~eh~~~vL~G~g~y~l---~~~--~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl  256 (266)
T 4e2q_A          183 AYDFNIHTMDFQPGEFLNVKEVHY-NQHGLLLLEGQGIYRL---GDN--WYPVQAGDVIWMAPFVPQWYAALGKTRSRYL  256 (266)
T ss_dssp             TCSEEEEEEEECTTCBCSSCCCCS-CCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             ccceEEEEEEECCCcCcCCceEcc-cceEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence            5578999999999999996 8885 5699999999999886   555  7899999999999999999999999999887


Q ss_pred             EEee
Q 040384          168 PSFN  171 (224)
Q Consensus       168 ~~~~  171 (224)
                      ..-+
T Consensus       257 ~ykd  260 (266)
T 4e2q_A          257 LYKD  260 (266)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            6543

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.78  E-value=2.4e-08  Score=83.87  Aligned_cols=78  Identities=17%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             ccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           88 NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        88 ~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      ....+.+..+.+.||...|.|.|+ ..|+.||++|++++.+.  +++  ...+++||++++|.|..|++. ++++|+.++
T Consensus       128 ~s~~l~lG~v~l~PG~~yP~HsHp-~EEiy~VLsG~~e~~v~--~g~--~~~l~pGd~v~ipsgv~Ha~r-t~dePllal  201 (217)
T 4b29_A          128 LTQSLRVTVGYWGPGLDYGWHEHL-PEELYSVVSGRALFHLR--NAP--DLMLEPGQTRFHPANAPHAMT-TLTDPILTL  201 (217)
T ss_dssp             ECSSCEEEEEEECSSCEEEEEECS-SEEEEEEEEECEEEEET--TSC--CEEECTTCEEEECTTCCEEEE-CCSSCEEEE
T ss_pred             CCCeEEEEEEEECCCCcCCCCCCC-CceEEEEEeCCEEEEEC--CCC--EEecCCCCEEEcCCCCceeEE-ECCccEEEE
Confidence            344789999999999999999997 58999999999998872  233  689999999999999999997 588998766


Q ss_pred             EEee
Q 040384          168 PSFN  171 (224)
Q Consensus       168 ~~~~  171 (224)
                      -+..
T Consensus       202 wvW~  205 (217)
T 4b29_A          202 VLWR  205 (217)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5553

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.78  E-value=2.1e-08  Score=84.28  Aligned_cols=74  Identities=12%  Similarity=-0.021  Sum_probs=63.5

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      +-+.++.++.++||...++|.|| ..|++||++|++++.+   +++  +..|++||++++|+|..|.+.|..  ++.++.
T Consensus        34 ~~~~~~~~~~~~~G~~~~~h~h~-~~~~~~Vl~G~~~~~i---~~~--~~~l~~Gd~~~~p~~~~H~~~a~~--~~~~l~  105 (227)
T 3rns_A           34 QPNSYISLFSLAKDEEITAEAML-GNRYYYCFNGNGEIFI---ENN--KKTISNGDFLEITANHNYSIEARD--NLKLIE  105 (227)
T ss_dssp             CSSEEEEEEEECTTCEEEECSCS-SCEEEEEEESEEEEEE---SSC--EEEEETTEEEEECSSCCEEEEESS--SEEEEE
T ss_pred             CCCcEEEEEEECCCCccCccccC-CCEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECC--CcEEEE
Confidence            33678999999999999999997 5899999999999987   344  589999999999999999999864  567766


Q ss_pred             Ee
Q 040384          169 SF  170 (224)
Q Consensus       169 ~~  170 (224)
                      ++
T Consensus       106 i~  107 (227)
T 3rns_A          106 IG  107 (227)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.76  E-value=2.7e-08  Score=86.19  Aligned_cols=104  Identities=12%  Similarity=0.011  Sum_probs=75.0

Q ss_pred             CCCccCCCeee-eccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEE
Q 040384           50 ETEVTSDDFFF-DLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGI  128 (224)
Q Consensus        50 ~~~vt~~df~f-~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~  128 (224)
                      .+-++.+|++. .+  |    .-.|.++...-...   + +..+.+..++++|||..+.|.| ...|++||++|++++.+
T Consensus        37 ~avI~~~~iv~s~l--P----g~~~~~~~vL~sP~---~-G~~f~~~lv~l~PGg~s~~~~h-~~EEfiyVleG~l~l~l  105 (266)
T 4e2q_A           37 HALITPESHVYSPL--P----DWTNTLGAYLITPA---T-GSHFVMYLAKMKEMSSSGLPPQ-DIERLIFVVEGAVTLTN  105 (266)
T ss_dssp             EEEECGGGCCCEEC--T----TSSSEEEEEEECGG---G-TCSSEEEEEEECSSEECCCCCT-TEEEEEEEEEECEEEEC
T ss_pred             eEEECccceEEeeC--C----CCcCEEEEEEcCCC---C-CCcEEEEEEEECcCCcCCCCCC-CCeEEEEEEEEEEEEEE
Confidence            44555566665 22  1    22344444443333   2 2468899999999999888866 68999999999999987


Q ss_pred             EeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384          129 ITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus       129 v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      -+  ++  ++.|++||.+++|++..|++.|.  ++++++.+.
T Consensus       106 ~~--g~--~~~L~~Gds~y~p~~~~H~~~N~--~~Ar~l~V~  141 (266)
T 4e2q_A          106 TS--SS--SKKLTVDSYAYLPPNFHHSLDCV--ESATLVVFE  141 (266)
T ss_dssp             ----CC--CEEECTTEEEEECTTCCCEEEES--SCEEEEEEE
T ss_pred             CC--Cc--EEEEcCCCEEEECCCCCEEEEeC--CCEEEEEEE
Confidence            31  44  58999999999999999999995  567776654

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.66  E-value=6.7e-08  Score=71.77  Aligned_cols=63  Identities=19%  Similarity=0.140  Sum_probs=49.8

Q ss_pred             EEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEE
Q 040384           96 RVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVL  165 (224)
Q Consensus        96 rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~  165 (224)
                      ...+.||.. +.| | ...|++||++|++++.+-  +++  ...|++||++++|+|..|.+.|.++....
T Consensus        35 ~~~~~pg~~-~~h-H-~~~E~~~Vl~G~~~~~i~--~g~--~~~l~~GD~i~ip~g~~H~~~n~~~~~~~   97 (101)
T 1o5u_A           35 IWEKEVSEF-DWY-Y-DTNETCYILEGKVEVTTE--DGK--KYVIEKGDLVTFPKGLRCRWKVLEPVRKH   97 (101)
T ss_dssp             EEEECSEEE-EEE-C-SSCEEEEEEEEEEEEEET--TCC--EEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred             EEEeCCCcc-ccc-C-CceEEEEEEeCEEEEEEC--CCC--EEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence            566778764 345 6 578999999999999861  144  68999999999999999999998765443

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.66  E-value=1.5e-08  Score=82.93  Aligned_cols=66  Identities=15%  Similarity=0.190  Sum_probs=53.6

Q ss_pred             cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeC
Q 040384          105 NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNS  172 (224)
Q Consensus       105 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s  172 (224)
                      .++|+|+. .|+.||++|+++..+. .+++.+...+++||++++|+|..|+..+..+.....+-+|..
T Consensus        93 ~~~H~H~~-~Ei~~Vl~G~g~~~i~-~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~  158 (179)
T 1zrr_A           93 LNEHTHGE-DEVRFFVEGAGLFCLH-IGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDN  158 (179)
T ss_dssp             HSCBEESS-CEEEEEEESCCCCCEE-CSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECC
T ss_pred             ccceECCh-heEEEEEcceEEEEEE-eCCEEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccC
Confidence            57899976 8999999999998775 356666778999999999999999987765555666666653

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.60  E-value=8.1e-08  Score=73.86  Aligned_cols=73  Identities=15%  Similarity=0.138  Sum_probs=56.9

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+++....+.||... .|+|. ..|++||++|++++.+  ++++  ...|++||++++|+|..|.+.|.+... .++.++
T Consensus        48 ~~~~g~w~~~pG~~~-~~~~~-~~E~~~Vl~G~~~l~~--~~g~--~~~l~~GD~~~ip~g~~h~~~~~~~~r-K~yv~~  120 (123)
T 3bcw_A           48 KVESGVWESTSGSFQ-SNTTG-YIEYCHIIEGEARLVD--PDGT--VHAVKAGDAFIMPEGYTGRWEVDRHVK-KIYFVT  120 (123)
T ss_dssp             TEEEEEEEEEEEEEE-CCCTT-EEEEEEEEEEEEEEEC--TTCC--EEEEETTCEEEECTTCCCEEEEEEEEE-EEEEEE
T ss_pred             CEEEEEEEECCCcee-eEcCC-CcEEEEEEEEEEEEEE--CCCe--EEEECCCCEEEECCCCeEEEEECCcee-EEEEEE
Confidence            578888899998765 46663 2799999999999875  2454  589999999999999999999987544 334343

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=98.57  E-value=3.5e-07  Score=73.37  Aligned_cols=73  Identities=15%  Similarity=0.175  Sum_probs=61.8

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec--CCccEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV--GKENVLFFP  168 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~--G~~~a~~~~  168 (224)
                      |..+..++++||+..++|+|+. .|.+||++|+...   +.++    ..+++||.+..|.|..|...+.  +++.++++.
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~---~e~~----~~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~~~  112 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTG-TVIVYTVQGSWRY---KEHD----WVAHAGSVVYETASTRHTPQSAYAEGPDIITFN  112 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESS-CEEEEEEESCEEE---TTSS----CCBCTTCEEEECSSEEECEEESSSSSSCEEEEE
T ss_pred             CeEEEEEEECCCCCcccccCCC-CEEEEEEEeEEEE---eCCC----eEECCCeEEEECCCCcceeEeCCCCCCCEEEEE
Confidence            5788899999999999999975 7999999999764   2232    4899999999999999999998  778888777


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      +.+
T Consensus       113 ~~~  115 (159)
T 3ebr_A          113 IVA  115 (159)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            554

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.57  E-value=3.7e-07  Score=74.40  Aligned_cols=81  Identities=20%  Similarity=0.244  Sum_probs=63.6

Q ss_pred             cEEEEEEEEeCCcccCceecCC------CCceEEEEeCeEEEEEEeCCCeE------------------EEEEECCCCEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPR------SSESSIVIRGTVLVGIITTDNVF------------------YSKVVTAGMLF  146 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~------a~Ei~yVl~G~~~v~~v~~~~~~------------------~~~~l~~GDv~  146 (224)
                      ....-++.+.||...|.|+|+.      -.|-++|+.|++++.+  .+++.                  ....|++||.+
T Consensus        52 ~Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesv  129 (175)
T 2y0o_A           52 RYCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQY  129 (175)
T ss_dssp             SEEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEE
T ss_pred             CceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceeccCCceeeecCCcEEEECCCCEE
Confidence            3777889999999999999998      8899999999988876  22221                  24699999999


Q ss_pred             EecCCCeeEEEecCCccEEEEEEeeCCCC
Q 040384          147 LIPRGLVHFQLNVGKENVLFFPSFNSQLP  175 (224)
Q Consensus       147 vvP~G~~H~~~N~G~~~a~~~~~~~s~~p  175 (224)
                      .+|+|..|+++| |.+. .++.-+++.+-
T Consensus       130 tIppg~~H~f~a-geeg-vli~EvSt~~d  156 (175)
T 2y0o_A          130 TIPPNTKHWFQA-GEEG-AVVTEMSSTST  156 (175)
T ss_dssp             EECTTCCEEEEE-EEEE-EEEEEEEECCC
T ss_pred             EECCCCcEEEEe-CCCC-EEEEEEeCCCC
Confidence            999999999998 3333 45555554443

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.52  E-value=2.5e-07  Score=78.72  Aligned_cols=71  Identities=11%  Similarity=0.121  Sum_probs=60.0

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ..+.+.+++++||+....|+   ..|++||++|++++.+   +++  ...|++||.+++|++..|.+.|.  +++.++.+
T Consensus        48 ~~~~~~~~~l~Pg~~~~~~~---~ee~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~--~~~~~l~v  117 (246)
T 1sfn_A           48 ARFVQFTAEMPAGAQATESV---YQRFAFVLSGEVDVAV---GGE--TRTLREYDYVYLPAGEKHMLTAK--TDARVSVF  117 (246)
T ss_dssp             CSSEEEEEEECTTCEEECCS---SEEEEEEEEEEEEEEC---SSC--EEEECTTEEEEECTTCCCEEEEE--EEEEEEEE
T ss_pred             CcEEEEEEEECCCCcCCCCc---eeEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEeC--CCEEEEEE
Confidence            35788899999999887774   6799999999999986   344  68999999999999999999998  56766655


Q ss_pred             e
Q 040384          170 F  170 (224)
Q Consensus       170 ~  170 (224)
                      .
T Consensus       118 ~  118 (246)
T 1sfn_A          118 E  118 (246)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.51  E-value=6.6e-07  Score=79.99  Aligned_cols=80  Identities=14%  Similarity=0.145  Sum_probs=63.7

Q ss_pred             CCCccccEEEEEEEEeC---CcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEEEEEECCCCEEEecCCCeeEEEecC
Q 040384           85 PGVNTQGISTNRVDLAV---GGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus        85 P~l~~~gis~~rv~l~p---gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      +..+...+++.++++.+   |+..+.|.|+ ..|++||++|++++.+   +| +  ...|++||++++|+|..|.+.|.+
T Consensus       242 ~~~~~~~f~~~~i~~~~~~~g~~~~~h~~~-~~~~~~vleG~~~i~i---~g~~--~~~l~~Gd~~~iPag~~h~~~~~~  315 (350)
T 1juh_A          242 TQAQDTNYTLSTISMSTTPSTVTVPTWSFP-GACAFQVQEGRVVVQI---GDYA--ATELGSGDVAFIPGGVEFKYYSEA  315 (350)
T ss_dssp             HHHGGGCEEEEEEEECCCCTTSCCCCBCCS-SCEEEEEEESCEEEEE---TTSC--CEEECTTCEEEECTTCCEEEEESS
T ss_pred             CcCceeEEEEEEEeeccccCCCCCCcccCC-CcEEEEEEeeEEEEEE---CCeE--EEEeCCCCEEEECCCCCEEEEecC
Confidence            34454468898999988   4577788885 6899999999999998   34 4  589999999999999999999986


Q ss_pred             CccEEEEEEee
Q 040384          161 KENVLFFPSFN  171 (224)
Q Consensus       161 ~~~a~~~~~~~  171 (224)
                      +. ..++.+.+
T Consensus       316 ~~-~~~l~~~~  325 (350)
T 1juh_A          316 YF-SKVLFVSS  325 (350)
T ss_dssp             SS-EEEEEEEE
T ss_pred             Ce-EEEEEEec
Confidence            54 55555554

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.50  E-value=4.5e-07  Score=80.11  Aligned_cols=84  Identities=19%  Similarity=0.229  Sum_probs=65.9

Q ss_pred             EEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC-CeEEEEEECC-C---CEEEecCCCeeEEEecCCccEEEE
Q 040384           93 STNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVFYSKVVTA-G---MLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        93 s~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~~~~~l~~-G---Dv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .....+..||.....|||.+..|.++|++|++++.+-++. ++.  ..++. |   |++.+|+|..|.+.|.|+++++++
T Consensus       273 q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~  350 (369)
T 3st7_A          273 QVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEI--IEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTI  350 (369)
T ss_dssp             EEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCC--EEEEEETTBCCEEEECTTEEEEEEECSSSCEEEE
T ss_pred             eEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcE--EEEEecCCcceEEEeCCCceEEeEEcCCCcEEEE
Confidence            3445678999999999999999999999999998776543 443  44444 6   999999999999999998888877


Q ss_pred             EE----eeCCCCcce
Q 040384          168 PS----FNSQLPGTQ  178 (224)
Q Consensus       168 ~~----~~s~~pg~~  178 (224)
                      ..    |+.++|..+
T Consensus       351 ~~~~~~y~~~~~d~~  365 (369)
T 3st7_A          351 MWVNEMFDPNQPDTY  365 (369)
T ss_dssp             EEESSCCCSSSCCCE
T ss_pred             EecCcccCCCCCccc
Confidence            64    344455544

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=98.49  E-value=1.7e-06  Score=70.25  Aligned_cols=85  Identities=19%  Similarity=0.266  Sum_probs=71.6

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeC-CCe---EEEEEECCCCEEEecCCCeeEEEecCCccEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITT-DNV---FYSKVVTAGMLFLIPRGLVHFQLNVGKENVLF  166 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~-~~~---~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~  166 (224)
                      ++++..+...||...++|-|.++..+++|++|+++..+... +++   .....+++||++++|++.+|.+.|.++++++-
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aVS  147 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMVS  147 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEEE
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEEE
Confidence            56888999999999999999888899999999999876532 232   23578999999999999999999999999988


Q ss_pred             EEEeeCCCC
Q 040384          167 FPSFNSQLP  175 (224)
Q Consensus       167 ~~~~~s~~p  175 (224)
                      +-++..+..
T Consensus       148 lHvY~pp~~  156 (171)
T 3eqe_A          148 LHVYSPPLE  156 (171)
T ss_dssp             EEEEESCCC
T ss_pred             EEEeCCCcc
Confidence            888875543

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.43  E-value=1.5e-06  Score=78.41  Aligned_cols=89  Identities=15%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             Cce-EEEeecc-cCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC
Q 040384           73 GRA-VTEGNVH-EFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR  150 (224)
Q Consensus        73 g~~-~~~~~~~-~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~  150 (224)
                      |.. +..++.. .-+.++  -|++....|.||....+|-|. ++++++|++|++++.+   +++  +...++||+|++|.
T Consensus       260 g~~~~~y~NP~tg~~~~p--ti~~~~~~L~pG~~t~~hRht-~s~Vy~V~eG~G~~~I---~~~--~~~w~~gD~fvvP~  331 (368)
T 3nw4_A          260 GHAAIRYVNPTTGGDVMP--TLRCEFHRLRAGTETATRNEV-GSTVFQVFEGAGAVVM---NGE--TTKLEKGDMFVVPS  331 (368)
T ss_dssp             TEEEEECBCTTTSSBSSS--SCEEEEEEECTTCBCCCEEES-SCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECT
T ss_pred             ceEEEEEeCCCCCCCcch--hHHhheEEECCCCccCCeecc-ccEEEEEEeCcEEEEE---CCE--EEEecCCCEEEECC
Confidence            555 5556643 334455  456777789999999999995 5799999999999987   454  68999999999999


Q ss_pred             CCeeEEEecCCccEEEEEEee
Q 040384          151 GLVHFQLNVGKENVLFFPSFN  171 (224)
Q Consensus       151 G~~H~~~N~G~~~a~~~~~~~  171 (224)
                      +..|...|.  +++.++.+-|
T Consensus       332 w~~h~~~n~--~~a~Lf~~~D  350 (368)
T 3nw4_A          332 WVPWSLQAE--TQFDLFRFSD  350 (368)
T ss_dssp             TCCEEEEES--SSEEEEEEES
T ss_pred             CCcEEEEeC--CCEEEEEEeC
Confidence            999999996  4677765543

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.42  E-value=2e-06  Score=69.65  Aligned_cols=60  Identities=17%  Similarity=0.118  Sum_probs=51.3

Q ss_pred             EeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384           99 LAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus        99 l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      -.||+-...|.| ...|++||++|++++.+.+ +|+.....|++||++++|+|..|+-...+
T Consensus        42 ~Gpn~r~d~H~h-~~dE~FyvlkG~m~i~v~d-~g~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           42 GGPNHRTDYHDD-PLEEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             CSCBCCCCEEEC-SSCEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             cCCCcCccCcCC-CCceEEEEEeeEEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCccccC
Confidence            356777889988 5799999999999999987 45566799999999999999999986554

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.41  E-value=1.1e-06  Score=68.90  Aligned_cols=67  Identities=12%  Similarity=0.252  Sum_probs=52.5

Q ss_pred             CCcccCceecCCCCceEEEEeCeEEEEEEeCC-C--eEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384          101 VGGINPPHLHPRSSESSIVIRGTVLVGIITTD-N--VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~--~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ++++...|.|++..|+++|++|++++.+-+.. +  +.....|++|++++||+|..|.-....  .+.++.+
T Consensus        38 ~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~--e~~vLLi  107 (140)
T 3d0j_A           38 IEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQK--DTKMMYV  107 (140)
T ss_dssp             TTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECT--TCEEEEE
T ss_pred             cccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCC--ceEEEEE
Confidence            35677899999999999999999999987421 1  234689999999999999999987644  3444433

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=98.38  E-value=3.7e-07  Score=71.80  Aligned_cols=77  Identities=18%  Similarity=0.074  Sum_probs=58.5

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeE-EEEEECCCCEEEecCCCeeE-EEecCCccEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVF-YSKVVTAGMLFLIPRGLVHF-QLNVGKENVLFFP  168 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~-~~~~l~~GDv~vvP~G~~H~-~~N~G~~~a~~~~  168 (224)
                      |-.+.+++++||+..++|+|+. .|.+||++|+++..    ++.. ....+++||.+++|.|..|. ..+  .+.++++.
T Consensus        43 g~~~~~~~~~pG~~~p~H~H~~-~ee~~VL~G~~~~~----~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~--~e~~~~l~  115 (145)
T 2o1q_A           43 GSWTAIFDCPAGSSFAAHVHVG-PGEYFLTKGKMDVR----GGKAAGGDTAIAPGYGYESANARHDKTEF--PVASEFYM  115 (145)
T ss_dssp             TEEEEEEEECTTEEECCEEESS-CEEEEEEEEEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEE--EEEEEEEE
T ss_pred             ccEEEEEEECCCCCCCccCCCC-CEEEEEEEeEEEEc----CCCEecceEeCCCEEEEECcCCccCCeEC--CCCeEEEE
Confidence            3467789999999999999975 67799999998743    3321 12789999999999999999 543  34466676


Q ss_pred             EeeCCC
Q 040384          169 SFNSQL  174 (224)
Q Consensus       169 ~~~s~~  174 (224)
                      +++...
T Consensus       116 ~~~gp~  121 (145)
T 2o1q_A          116 SFLGPL  121 (145)
T ss_dssp             EEESCE
T ss_pred             EECCcc
Confidence            766443

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=98.34  E-value=1.3e-06  Score=70.43  Aligned_cols=74  Identities=20%  Similarity=0.218  Sum_probs=58.7

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC--CccEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG--KENVLFFP  168 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G--~~~a~~~~  168 (224)
                      |..+..+.++||+..++|+|+. .|.+||++|+...+    ++.  ...+++||.+..|.|..|...+..  +++++.+.
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~f~~~----~~~--~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~  114 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHTG-TVHMYTISGCWYYT----EYP--GQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIF  114 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEESS-CEEEEEEESEEEET----TCT--TSCEETTEEEEECTTCEECEECCTTCSSCEEEEE
T ss_pred             CcEEEEEEECCCCcCCcccCCC-CEEEEEEEEEEEEC----CCc--eEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEE
Confidence            5678899999999999999974 79999999998752    220  257899999999999999998864  33675555


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      +.+
T Consensus       115 v~~  117 (165)
T 3cjx_A          115 MLS  117 (165)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            444

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=98.33  E-value=5.3e-06  Score=69.23  Aligned_cols=81  Identities=14%  Similarity=0.069  Sum_probs=67.6

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEe--CCCeE----EEEEECCCCEEEecC--CCeeEEEec-CC
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIIT--TDNVF----YSKVVTAGMLFLIPR--GLVHFQLNV-GK  161 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~--~~~~~----~~~~l~~GDv~vvP~--G~~H~~~N~-G~  161 (224)
                      .+++..+...||...++|-|.. ..+++|++|+++..+..  .+|+.    ...++++||++.++.  |.+|.+.|. ++
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~  156 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  156 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEeCCCcccCcccCCc-ceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCC
Confidence            4688889999999999999976 89999999999887653  23322    157999999999999  999999999 68


Q ss_pred             ccEEEEEEeeC
Q 040384          162 ENVLFFPSFNS  172 (224)
Q Consensus       162 ~~a~~~~~~~s  172 (224)
                      ++++.+-++..
T Consensus       157 ~~avsLHvY~~  167 (208)
T 2gm6_A          157 RVSISIHVYGA  167 (208)
T ss_dssp             SCEEEEEEESS
T ss_pred             CcEEEEEEEcC
Confidence            88888877753

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.21  E-value=8.3e-06  Score=66.06  Aligned_cols=59  Identities=15%  Similarity=0.319  Sum_probs=48.9

Q ss_pred             eCCcccCceecCCCCceEEEEeCeEEEEEEeCCC----eEEEEEECCCCEEEecCCCeeEEEecC
Q 040384          100 AVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN----VFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus       100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~----~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      .|+.-.-.|.| ...|++|+++|+..+.+.+. |    +.....|++||++++|+|..|+-....
T Consensus        42 GPn~r~D~H~~-~~eE~Fy~lkG~m~l~v~d~-g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~  104 (176)
T 1zvf_A           42 GPNERTDYHIN-PTPEWFYQKKGSMLLKVVDE-TDAEPKFIDIIINEGDSYLLPGNVPHSPVRFA  104 (176)
T ss_dssp             SSBCCSCEEEC-SSCEEEEEEESCEEEEEEEC-SSSSCEEEEEEECTTEEEEECTTCCEEEEECT
T ss_pred             CCCcCCcCcCC-CCceEEEEEeCEEEEEEEcC-CCcccceeeEEECCCCEEEcCCCCCcCCcccC
Confidence            34566778955 57899999999999999883 4    566899999999999999999985543

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.18  E-value=1.1e-05  Score=62.51  Aligned_cols=60  Identities=20%  Similarity=0.205  Sum_probs=47.4

Q ss_pred             CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC-ccEEEE-EEee
Q 040384          106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK-ENVLFF-PSFN  171 (224)
Q Consensus       106 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~-~~a~~~-~~~~  171 (224)
                      .||.| +.-|++||++|++++.+   +++  .+.+++||++++|+|..|...+.++ ++...+ ..|+
T Consensus        32 ~p~~h-~~~~i~~v~~G~~~~~i---~~~--~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i~f~   93 (164)
T 2arc_A           32 RPLGM-KGYILNLTIRGQGVVKN---QGR--EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFR   93 (164)
T ss_dssp             ETTCC-SSEEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEEC
T ss_pred             cccCC-CceEEEEEEEeEEEEEE---CCE--EEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEEEEC
Confidence            48889 46799999999999886   455  6899999999999999999888663 544433 3443

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=98.14  E-value=1.3e-05  Score=69.41  Aligned_cols=56  Identities=16%  Similarity=0.294  Sum_probs=48.7

Q ss_pred             ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384          104 INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus       104 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      -...| |....|++|+++|..++.+.+ +|+.....+++||++++|+|..|.=....+
T Consensus        43 R~d~H-~~~~dE~FyqlkG~m~l~~~d-~g~~~~V~i~eGemfllP~gv~HsP~r~~e   98 (286)
T 2qnk_A           43 RKDYH-IEEGEEVFYQLEGDMVLRVLE-QGKHRDVVIRQGEIFLLPARVPHSPQRFAN   98 (286)
T ss_dssp             CCCEE-ECSSCEEEEEEESCEEEEEEE-TTEEEEEEECTTEEEEECTTCCEEEEECTT
T ss_pred             CccCc-CCCCCeEEEEEeCeEEEEEEe-CCceeeEEECCCeEEEeCCCCCcCCcccCC
Confidence            36788 888999999999999999987 466678999999999999999999866443

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=98.12  E-value=4.8e-05  Score=63.06  Aligned_cols=85  Identities=12%  Similarity=0.024  Sum_probs=69.6

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeC--CC-----eEEEEEECCCCEEEe-cCCCeeEEEecC-C
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITT--DN-----VFYSKVVTAGMLFLI-PRGLVHFQLNVG-K  161 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~--~~-----~~~~~~l~~GDv~vv-P~G~~H~~~N~G-~  161 (224)
                      .+++..+...||...++|-|.++..+++|++|+++..+.+-  ++     .....++++||+..+ |++.+|.+.|.+ +
T Consensus        69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~  148 (200)
T 3eln_A           69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  148 (200)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCC
Confidence            47888899999999999999878999999999999886542  11     123689999999999 888899999998 6


Q ss_pred             ccEEEEEEeeCCCC
Q 040384          162 ENVLFFPSFNSQLP  175 (224)
Q Consensus       162 ~~a~~~~~~~s~~p  175 (224)
                      ++++-+=++..+..
T Consensus       149 ~~avSlHvY~pp~~  162 (200)
T 3eln_A          149 EPAVSLHLYSPPFD  162 (200)
T ss_dssp             CCEEEEEEEESCCS
T ss_pred             CCEEEEEeCCCCcc
Confidence            78877766665544

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=98.07  E-value=4.3e-06  Score=66.70  Aligned_cols=77  Identities=14%  Similarity=0.044  Sum_probs=58.6

Q ss_pred             CCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EEEEEECCCCEEEec
Q 040384           71 AFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FYSKVVTAGMLFLIP  149 (224)
Q Consensus        71 ~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~GDv~vvP  149 (224)
                      ..|..+..+..  -|   ..|-...+++++||+..++|+|+. .|.+|||+|+...+    +|. .....+++|+.+..|
T Consensus        30 ~~Gv~~k~L~~--~~---e~g~~t~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~~----~Gd~~~~~~~~aGsYv~eP   99 (153)
T 3bal_A           30 DGGITWQLLHS--SP---ETSSWTAIFNCPAGSSFASHIHAG-PGEYFLTKGKMEVR----GGEQEGGSTAYAPSYGFES   99 (153)
T ss_dssp             ESCCEEEEEEE--ET---TTTEEEEEEEECTTEEECCEEESS-CEEEEEEESEEEET----TCGGGTSEEEESSEEEEEC
T ss_pred             CCCeEEEEEEE--CC---ccceEEEEEEeCCCCCccCccCCC-CEEEEEEEEEEEec----CccccCccccCCCeEEEcC
Confidence            34555655522  23   247889999999999999999975 78899999998764    222 114688999999999


Q ss_pred             CCCeeEEE
Q 040384          150 RGLVHFQL  157 (224)
Q Consensus       150 ~G~~H~~~  157 (224)
                      +|..|+..
T Consensus       100 pGs~H~p~  107 (153)
T 3bal_A          100 SGALHGKT  107 (153)
T ss_dssp             TTCEESCC
T ss_pred             CCCcccce
Confidence            99999843

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.04  E-value=2.4e-05  Score=65.94  Aligned_cols=69  Identities=23%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      +..+..+.++||+..++|+|+ ..|.+||++|+..    +.     ...+.+||.+..|.|..|....  ++.+++++.+
T Consensus        42 g~~~~lvr~~pG~~~p~H~H~-g~Ee~~VL~G~f~----d~-----~~~~~~Gd~~~~P~g~~H~p~a--~~gc~~~vk~  109 (223)
T 3o14_A           42 ARATSIVRYAPGSRFSAHTHD-GGEEFIVLDGVFQ----DE-----HGDYPAGTYVRNPPTTSHVPGS--AEGCTIFVKL  109 (223)
T ss_dssp             CEEEEEEEECTTEECCCEECT-TCEEEEEEEEEEE----ET-----TEEEETTEEEEECTTCEECCEE--SSCEEEEEEE
T ss_pred             ccEEEEEEECCCCCcccccCC-CCEEEEEEEeEEE----EC-----CeEECCCeEEEeCCCCccccEe--CCCCEEEEEe
Confidence            556778999999999999996 5799999999965    32     2589999999999999999775  4567877776


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      .
T Consensus       110 ~  110 (223)
T 3o14_A          110 W  110 (223)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=97.82  E-value=0.00052  Score=55.45  Aligned_cols=132  Identities=18%  Similarity=0.160  Sum_probs=89.2

Q ss_pred             CCCCceEEEeecccCC-CCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCe-EEEEEEeCCCeEEEEE----ECCC
Q 040384           70 NAFGRAVTEGNVHEFP-GVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGT-VLVGIITTDNVFYSKV----VTAG  143 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P-~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~-~~v~~v~~~~~~~~~~----l~~G  143 (224)
                      .+.||..++.....-+ .-.....+....-|.+|....+|.. ++.|+.|...|. +++.+++++++..+.+    +.+|
T Consensus        26 HPEGG~yret~rs~~~~~~~R~~~T~IYfLL~~g~~S~~HRv-~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~G  104 (170)
T 1yud_A           26 HVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG  104 (170)
T ss_dssp             CTTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CCCCceEEEeecCCCCCCCCCccceEEEEEECCCCCCeeEEc-CCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccC
Confidence            5688989888866411 1122235777888999998777777 689999999998 4888888888765554    5789


Q ss_pred             CE--EEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 040384          144 ML--FLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIK  211 (224)
Q Consensus       144 Dv--~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~  211 (224)
                      |.  ++||+|.++...+.+.+-+.+-+..   .||+..-...+      .+.+-|.+.|---.+.|++|.
T Consensus       105 e~pQ~vVP~G~wqaa~~~~g~~~LV~C~V---aPGF~f~dfel------~~~~~L~~~~P~~~~~I~~lt  165 (170)
T 1yud_A          105 ERPQFLVPKGCIFGSAMNQDGFSLVGCMV---SPGFTFDDFEL------FSQEALLAMYPQHKAVVQKLS  165 (170)
T ss_dssp             EESCEEECTTCEEEEEESSSSEEEEEEEE---SSCCCGGGCCB------CBHHHHHHSCCTTHHHHTTSC
T ss_pred             ceeEEEECCCCEEEEEECCCCcEEEEEEE---CCCccCCceEE------cCHHHHHhHCchhHHHHHHhh
Confidence            99  9999999999988722333333332   35554332222      345566666666666666654

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.79  E-value=0.00048  Score=53.98  Aligned_cols=94  Identities=9%  Similarity=0.034  Sum_probs=65.2

Q ss_pred             CCceEEEeec-ccCCCCccccEEEEE-EEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCC-EEEe
Q 040384           72 FGRAVTEGNV-HEFPGVNTQGISTNR-VDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGM-LFLI  148 (224)
Q Consensus        72 ~g~~~~~~~~-~~~P~l~~~gis~~r-v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GD-v~vv  148 (224)
                      ..|.++.+.. .+.|- .-  -.+.. ...+||....+|.|....|++++++|+..+-+-+ +....+..|.+.. .+.|
T Consensus        16 ~RG~L~~~e~~~~ipf-~i--kRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldD-g~~~~~~~L~~~~~gL~I   91 (141)
T 2pa7_A           16 SRGSLVAIEENKNIPF-SI--KRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDD-GNIIQEITLDSPAVGLYV   91 (141)
T ss_dssp             TTEEEEEEETTTTSSS-CC--CEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEEC-SSCEEEEEECCTTEEEEE
T ss_pred             CCCcEEEEeccCCCCC-Cc--cEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEEC-CcEEEEEEECCCCcEEEe
Confidence            4566777766 33333 21  12222 3345888999999999999999999999998843 2233456675554 5899


Q ss_pred             cCCCeeEEEecCCccEEEEEEe
Q 040384          149 PRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus       149 P~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      |+|.+|.+.+.++. ++++.+-
T Consensus        92 ppgvWh~~~~~s~~-avllvla  112 (141)
T 2pa7_A           92 GPAVWHEMHDFSSD-CVMMVLA  112 (141)
T ss_dssp             CTTCEEEEECCCTT-CEEEEEE
T ss_pred             CCCEEEEEEEcCCC-eEEEEEC
Confidence            99999999998775 6655443

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=97.77  E-value=0.00027  Score=57.33  Aligned_cols=73  Identities=12%  Similarity=0.009  Sum_probs=60.2

Q ss_pred             EeCCcccCceecCCCCceEEEEeCeEEEEEEeCC------CeEEEEEEC---CCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           99 LAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD------NVFYSKVVT---AGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        99 l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~---~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      ..+|-++..|+|..-.++++|++|++..-++|-.      |+.....|.   ....+.||+|++|-+.|.++++++++..
T Consensus        60 s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly~  139 (174)
T 3ejk_A           60 VLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANC  139 (174)
T ss_dssp             ECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEEE
T ss_pred             CCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEEE
Confidence            4788899999998888999999999999988743      456777887   6689999999999999998866766544


Q ss_pred             ee
Q 040384          170 FN  171 (224)
Q Consensus       170 ~~  171 (224)
                      -+
T Consensus       140 ~s  141 (174)
T 3ejk_A          140 TD  141 (174)
T ss_dssp             ES
T ss_pred             CC
Confidence            43

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.71  E-value=0.00018  Score=61.12  Aligned_cols=72  Identities=19%  Similarity=0.164  Sum_probs=54.6

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      ++++..+.+ .|...... +| .+|++||++|++++..   +|+  ..++++||+++||+|..|.+...+... .++..+
T Consensus        46 ~~~~G~~~~-~g~~~v~~-~p-~dE~~~VleG~~~lt~---~g~--~~~~~~Gd~~~ip~G~~~~w~~~~~~~-~~y~~~  116 (238)
T 3myx_A           46 GIAAGIVEF-GTALSVEA-YP-YTEMLVMHRGSVTLTS---GTD--SVTLSTGESAVIGRGTQVRIDAQPESL-WAFCAS  116 (238)
T ss_dssp             SEEEEEEEE-CSEEEESS-CS-SEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEECTTEE-EEEEEE
T ss_pred             CeEEEEEEe-cccccccc-CC-CcEEEEEEEeEEEEEC---CCe--EEEEcCCCEEEECCCCEEEEEecCCeE-EEEEec
Confidence            678888888 55544322 22 3799999999999885   455  688999999999999999998776543 345566


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      .
T Consensus       117 ~  117 (238)
T 3myx_A          117 T  117 (238)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=97.69  E-value=0.00065  Score=56.71  Aligned_cols=82  Identities=15%  Similarity=0.071  Sum_probs=65.9

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEe--CCCeEE----EEEECCCCEEEecCC--CeeEEEecC-C
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIIT--TDNVFY----SKVVTAGMLFLIPRG--LVHFQLNVG-K  161 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~--~~~~~~----~~~l~~GDv~vvP~G--~~H~~~N~G-~  161 (224)
                      .+++..+...||...++|=|. +..++.|++|+.+..+..  ++++..    ...+++||+.+++.+  .+|.+.|.+ +
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d  150 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSD  150 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCC
Confidence            467888999999999999997 899999999999877643  234322    378999999999987  899999984 7


Q ss_pred             ccEEEEEEeeCC
Q 040384          162 ENVLFFPSFNSQ  173 (224)
Q Consensus       162 ~~a~~~~~~~s~  173 (224)
                      ++++-+=++...
T Consensus       151 ~~avSLHvYg~p  162 (211)
T 3uss_A          151 RTSISIHVYGAN  162 (211)
T ss_dssp             SCEEEEEEESSC
T ss_pred             CCEEEEEEcCCC
Confidence            778766666533

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.59  E-value=0.00025  Score=53.88  Aligned_cols=63  Identities=16%  Similarity=0.081  Sum_probs=47.5

Q ss_pred             EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384           92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus        92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      ..+......||...- +++ ...|++||++|++++..  .+|+  ...+++||++++|+|....+.-..
T Consensus        42 ~~~GvWe~tPG~~~~-~~~-~~~E~~~iLeG~~~lt~--ddG~--~~~l~aGD~~~~P~G~~gtWev~e  104 (116)
T 3es4_A           42 TIVAVWMAEPGIYNY-AGR-DLEETFVVVEGEALYSQ--ADAD--PVKIGPGSIVSIAKGVPSRLEILS  104 (116)
T ss_dssp             CEEEEEEECSEEEEE-CCC-SEEEEEEEEECCEEEEE--TTCC--CEEECTTEEEEECTTCCEEEEECS
T ss_pred             EEEEEEecCCceeEC-eeC-CCcEEEEEEEeEEEEEe--CCCe--EEEECCCCEEEECCCCeEEEEEeE
Confidence            455566888887653 233 22499999999999874  3454  589999999999999998886543

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.49  E-value=0.00069  Score=57.54  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=50.7

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      .++.......||.....++  +..|+.||++|++++.-  .+|+  ..++++||+++||+|..-.|.-..
T Consensus       166 ~~~~GiW~~tpG~~~~~~~--~~~E~~~ILeG~v~lt~--~~G~--~~~~~aGD~~~~P~G~~~tWev~e  229 (238)
T 3myx_A          166 TLRIGVWDSTPYERISRPH--KIHELMNLIEGRVVLSL--ENGS--SLTVNTGDTVFVAQGAPCKWTSTG  229 (238)
T ss_dssp             SCEEEEEEECCEEBCCEEC--SSCEEEEEEECCEEEEE--TTSC--EEEECTTCEEEECTTCEEEEEESS
T ss_pred             CEEEeEEEeCCCEEECCcC--CCCEEEEEEEeEEEEEe--CCCC--EEEECCCCEEEECCCCEEEEEECc
Confidence            4778888889988554333  35799999999998763  4565  689999999999999988887653

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=97.14  E-value=0.0023  Score=53.86  Aligned_cols=65  Identities=12%  Similarity=0.028  Sum_probs=48.4

Q ss_pred             cEEEEEEEEeCCc--ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384           91 GISTNRVDLAVGG--INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV  159 (224)
Q Consensus        91 gis~~rv~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~  159 (224)
                      ++-+....+....  ...+||| +.-|++||.+|++. .+ + +.......+++||++++|+|..|.+...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~G~~~-~i-~-~~~~~~~~l~~g~l~~i~p~~~h~~~~~   72 (276)
T 3gbg_A            6 SFQTNVYRMSKFDTYIFNNLYI-NDYKMFWIDSGIAK-LI-D-KNCLVSYEINSSSIILLKKNSIQRFSLT   72 (276)
T ss_dssp             TEEEEEEEECTTCEEEEEEEEC-SSCEEEEESSSCEE-EE-E-TTTTEEEEECTTEEEEECTTCEEEEEEE
T ss_pred             hhhhhhhhhhcccchhccHhhh-cceEEEEEecCceE-EE-C-CccceeEEEcCCCEEEEcCCCceeeccc
Confidence            4445556666554  3478999 66899999999999 55 4 2201147899999999999999998765

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=97.00  E-value=0.0032  Score=51.95  Aligned_cols=69  Identities=19%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             eCCcccCceecCCCCceEEEEe-CeEEEEEEeCC-----CeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384          100 AVGGINPPHLHPRSSESSIVIR-GTVLVGIITTD-----NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus       100 ~pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~-----~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+|.++-.|+|+ -.++++|++ |++..-++|-.     ++.....|..+..+.||+|.+|-..+.++. ++++...
T Consensus        68 ~~GvlRGlH~h~-q~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~-a~~~y~~  142 (197)
T 1nxm_A           68 RKNVLRGLHAEP-WDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF-VAYSYLV  142 (197)
T ss_dssp             ETTBEEEEEECS-SCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE-EEEEEEE
T ss_pred             CCCCcceeeecc-cceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCC-eEEEEEC
Confidence            678899999995 569999999 99877777765     677888999999999999999999998765 5544333

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=96.98  E-value=0.0057  Score=50.74  Aligned_cols=67  Identities=16%  Similarity=0.298  Sum_probs=53.6

Q ss_pred             eCCcccCceecC---CCCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEE
Q 040384          100 AVGGINPPHLHP---RSSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus       100 ~pgg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .+|-++-.|+|.   .-.++++|++|++..-++|-.      |+.....|.+  +..+.||+|++|-+.+.+++ +.++
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~-a~~~  155 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH-TIVM  155 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS-EEEE
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC-EEEE
Confidence            578899999994   257999999999877677632      5667778865  79999999999999999865 4443

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=96.95  E-value=0.011  Score=48.32  Aligned_cols=69  Identities=19%  Similarity=0.252  Sum_probs=54.7

Q ss_pred             eCCcccCceec--CCCCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEEEE
Q 040384          100 AVGGINPPHLH--PRSSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       100 ~pgg~~~pH~H--p~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .+|-++-.|+|  ..-.++++|++|++..-++|-.      |+.....|.+  +..+.||+|++|-+.+.+++ ++++..
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  134 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYK  134 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEEe
Confidence            37889999999  6668999999999876666643      4667777754  68999999999999999876 554433

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=96.86  E-value=0.0039  Score=53.41  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=54.0

Q ss_pred             EEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEec--CCCeeEEEecCC-ccEEEE
Q 040384           94 TNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIP--RGLVHFQLNVGK-ENVLFF  167 (224)
Q Consensus        94 ~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP--~G~~H~~~N~G~-~~a~~~  167 (224)
                      +....+.||.-.++|-|.+-..+.||++|+++-.  |+.|.  ..++++||+-...  +|..|..+|..+ +++.++
T Consensus        66 ln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn--~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~l  138 (256)
T 2vec_A           66 LNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DSEGN--HVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRM  138 (256)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ETTSC--EEEEETTEEEEECCCTTCCEEEEECCSSSCEEEE
T ss_pred             ccccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eCCCC--EEEECCCeEEEEECCCCeEEEEEECCCCceEEEE
Confidence            4466788998899999966544779999998765  55555  5899999999995  467999999754 566544

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=96.84  E-value=0.013  Score=47.70  Aligned_cols=69  Identities=16%  Similarity=0.166  Sum_probs=54.5

Q ss_pred             eCCcccCceec--CCCCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEEEE
Q 040384          100 AVGGINPPHLH--PRSSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       100 ~pgg~~~pH~H--p~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .+|-++-.|+|  ..-.++++|++|++..-++|-.      |+.....|.+  +..+.||+|++|-+.+.+++ ++++..
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  135 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEY-AEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC-EEEEEe
Confidence            37889999999  6667999999999876666642      4667777755  68999999999999999876 554433

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=96.84  E-value=0.007  Score=53.73  Aligned_cols=71  Identities=21%  Similarity=0.194  Sum_probs=52.4

Q ss_pred             EEEeC-CcccCceecCCCCceEEEEeCeEEEEEE-eCC---------------------------------CeEEEEEEC
Q 040384           97 VDLAV-GGINPPHLHPRSSESSIVIRGTVLVGII-TTD---------------------------------NVFYSKVVT  141 (224)
Q Consensus        97 v~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v-~~~---------------------------------~~~~~~~l~  141 (224)
                      +-+.| |+..++|+.+. .-++..++|+=+..+. .++                                 ...+..+|+
T Consensus       145 ~~~gp~g~~~~~H~D~~-dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~  223 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDAY-TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLT  223 (342)
T ss_dssp             EEEECSSCCCCSEECSS-EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEEC
T ss_pred             EEEeCCCCCCCCeECCh-hcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEEC
Confidence            55556 88899999854 5677788899888877 332                                 012467999


Q ss_pred             CCCEEEecCCCeeEEEecCCccEEEEE
Q 040384          142 AGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       142 ~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      +||++++|+|++|+..+.++++..-++
T Consensus       224 pGD~LyiP~gwwH~v~s~~~~~slsvs  250 (342)
T 1vrb_A          224 PGTMLYLPRGLWHSTKSDQATLALNIT  250 (342)
T ss_dssp             TTCEEEECTTCEEEEECSSCEEEEEEE
T ss_pred             CCcEEEeCCCccEEEEECCCCceEEEE
Confidence            999999999999999988544444343

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=96.83  E-value=0.013  Score=48.26  Aligned_cols=67  Identities=13%  Similarity=0.262  Sum_probs=52.9

Q ss_pred             eCCcccCceecCC---CCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEE
Q 040384          100 AVGGINPPHLHPR---SSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus       100 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .+|-++-.|+|..   -.++++|++|++..-++|-.      |+.....|.+  +..+.||+|++|-+.+.+++ ++++
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~-a~~l  150 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS-IVIY  150 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE-EEEE
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEE
Confidence            4788899999953   46999999999976667642      4567778864  79999999999999999874 4443

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=96.80  E-value=0.018  Score=46.84  Aligned_cols=67  Identities=13%  Similarity=0.157  Sum_probs=53.0

Q ss_pred             eCCcccCceecC---CCCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEE
Q 040384          100 AVGGINPPHLHP---RSSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus       100 ~pgg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .+|-++-.|+|.   .-.++++|++|++..-++|-.      |+.....|.+  +..+.||+|++|-+.+.+++ ++++
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~  132 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY-AEFL  132 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEE
T ss_pred             CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEE
Confidence            378899999995   457999999999876666643      4566777755  68999999999999999876 4443

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=96.79  E-value=0.018  Score=47.63  Aligned_cols=68  Identities=13%  Similarity=0.164  Sum_probs=53.7

Q ss_pred             eCCcccCceecCC---CCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEEE
Q 040384          100 AVGGINPPHLHPR---SSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       100 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .+|-++-.|+|..   -.++++|++|++..-++|-.      |+.....|.+  +..+.||+|++|-+.+.+++ ++++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD-TVMSY  133 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC-eEEEE
Confidence            4788899999953   47999999999876667642      4567788866  58999999999999999876 44443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=96.71  E-value=0.02  Score=47.74  Aligned_cols=67  Identities=12%  Similarity=0.166  Sum_probs=52.7

Q ss_pred             eCCcccCceecCC---CCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEE
Q 040384          100 AVGGINPPHLHPR---SSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus       100 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .+|-++-.|+|..   -.++++|++|++..-++|-.      |+.....|.+  +..+.||+|++|-+.+.+++ ++++
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~~l  140 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE-ATLC  140 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC-eEEE
Confidence            4788999999954   47999999999876666642      4566777765  58999999999999999876 4443

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=96.64  E-value=0.015  Score=48.00  Aligned_cols=67  Identities=13%  Similarity=0.179  Sum_probs=53.7

Q ss_pred             eCCcccCceecC---CCCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEE
Q 040384          100 AVGGINPPHLHP---RSSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus       100 ~pgg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .+|-++.+|+|.   .-..+++|++|++.--+||-.      |+.....|.+  +..++||+|+.|-+.+.+++ +.++
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~-a~~~  129 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDD-ATLV  129 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTT-EEEE
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCC-eEEE
Confidence            578899999994   357999999999887777742      5666777765  88999999999999998765 4443

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=96.60  E-value=0.0027  Score=53.27  Aligned_cols=65  Identities=15%  Similarity=0.230  Sum_probs=52.5

Q ss_pred             EEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           93 STNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        93 s~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .+..+.++||...++|.| ...|+ +||+|++.    + ++    .++.+|+-+..|.|..|.... |++.+.++.-
T Consensus       147 ~v~l~r~~~G~~~~~~~h-gG~Ei-lVL~G~~~----d-~~----~~~~~GsWlR~P~gs~h~~~a-g~~g~~i~~k  211 (223)
T 3o14_A          147 TVTHRKLEPGANLTSEAA-GGIEV-LVLDGDVT----V-ND----EVLGRNAWLRLPEGEALSATA-GARGAKIWMK  211 (223)
T ss_dssp             EEEEEEECTTCEEEECCS-SCEEE-EEEEEEEE----E-TT----EEECTTEEEEECTTCCEEEEE-EEEEEEEEEE
T ss_pred             EEEEEEECCCCccCCCCC-CcEEE-EEEEeEEE----E-CC----ceECCCeEEEeCCCCccCcEE-CCCCeEEEEE
Confidence            456678899999999999 88886 99999965    3 22    689999999999999998876 5666766543

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=96.57  E-value=0.031  Score=46.96  Aligned_cols=67  Identities=13%  Similarity=0.206  Sum_probs=52.6

Q ss_pred             eCCcccCceecCC---CCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEE
Q 040384          100 AVGGINPPHLHPR---SSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus       100 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .+|-++-.|+|..   -.++++|++|++..-++|-.      |+.....|.+  +..+.||+|++|-+.+.+++ ++++
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~vl  151 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STVM  151 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC-EEEE
Confidence            4788899999953   47999999999876666632      4566777765  58999999999999999876 4443

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=96.55  E-value=0.013  Score=49.67  Aligned_cols=71  Identities=21%  Similarity=0.227  Sum_probs=54.5

Q ss_pred             EEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEe--cCCCeeEEEecCC-ccEEEE
Q 040384           93 STNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLI--PRGLVHFQLNVGK-ENVLFF  167 (224)
Q Consensus        93 s~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vv--P~G~~H~~~N~G~-~~a~~~  167 (224)
                      .+....+.||.-.++|-|.+-..+.||++|+++-.  |+.|.  ..++++||+-..  -+|..|..+|..+ +++.++
T Consensus        42 v~n~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn--~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~l  115 (242)
T 1tq5_A           42 VINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DSMGN--KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLY  115 (242)
T ss_dssp             EEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ESSSC--EEEEETTCEEEEECTTCEEEEEECCCSSCCEEEE
T ss_pred             eeccceeCCCCcCCCcCCCCcEEEEEEEEeEEEEE--eCCCC--cEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEE
Confidence            34467788988889999966555889999998765  55454  589999999999  5568999999753 566544

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=96.54  E-value=0.012  Score=48.08  Aligned_cols=66  Identities=18%  Similarity=0.354  Sum_probs=49.3

Q ss_pred             EEEEEeCCc-ccCceecCCCCceEEEEeCeEEEEEEeCCC----------------------------------eEEEEE
Q 040384           95 NRVDLAVGG-INPPHLHPRSSESSIVIRGTVLVGIITTDN----------------------------------VFYSKV  139 (224)
Q Consensus        95 ~rv~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~----------------------------------~~~~~~  139 (224)
                      ..+-+.++| ..++|+.+. .-+..+++|+=+..+..++.                                  +.+..+
T Consensus       126 ~~~wiG~~gs~t~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~  204 (235)
T 4gjz_A          126 INAWFGPQGTISPLHQDPQ-QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCI  204 (235)
T ss_dssp             EEEEEECTTCEEEEECCSS-EEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEE
T ss_pred             eEEEEeCCCCCceeeeccc-cceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEE
Confidence            345566655 455677754 56778999999988876531                                  124678


Q ss_pred             ECCCCEEEecCCCeeEEEecCC
Q 040384          140 VTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus       140 l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      |++||+++||+|..|.+.|.+.
T Consensus       205 l~pGD~LyiP~gW~H~V~~l~~  226 (235)
T 4gjz_A          205 LSPGEILFIPVKYWHYVRALDL  226 (235)
T ss_dssp             ECTTCEEEECTTCEEEEEESSS
T ss_pred             ECCCCEEEeCCCCcEEEEECCC
Confidence            9999999999999999999864

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=96.45  E-value=0.011  Score=45.35  Aligned_cols=70  Identities=20%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             eCCcccCce----ecCCCCceEEEEeCeEEEEEEeCCCe---EEEEEECCCCEEEecCCCeeEEEecCCccEEE-EEEe
Q 040384          100 AVGGINPPH----LHPRSSESSIVIRGTVLVGIITTDNV---FYSKVVTAGMLFLIPRGLVHFQLNVGKENVLF-FPSF  170 (224)
Q Consensus       100 ~pgg~~~pH----~Hp~a~Ei~yVl~G~~~v~~v~~~~~---~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~-~~~~  170 (224)
                      -|+++...|    +|+.-.+.+.|++|++++...+++|.   .......+|+..++|++.+|.+.-..+ ++.+ +.++
T Consensus        22 lP~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsd-d~~f~leFy   99 (127)
T 3bb6_A           22 APAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD-DTYFNIDFF   99 (127)
T ss_dssp             SCGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST-TCEEEEEEE
T ss_pred             ChHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCC-CEEEEEEEE
Confidence            367788899    58777789999999999887766553   234667999999999999999987544 5555 4444

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=96.36  E-value=0.0098  Score=50.29  Aligned_cols=71  Identities=18%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeC-eEEEEEEeC--C-------------CeEE------EEEECCCCEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRG-TVLVGIITT--D-------------NVFY------SKVVTAGMLFLI  148 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G-~~~v~~v~~--~-------------~~~~------~~~l~~GDv~vv  148 (224)
                      -..--.+.+.+|...|.|+|+.-.|=+++.-| .+.+.+..+  +             |+..      ..+|++|+.+-+
T Consensus       105 ~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl  184 (246)
T 3kmh_A          105 CYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICL  184 (246)
T ss_dssp             CEEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEE
T ss_pred             cceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEec
Confidence            35666778899999999999999999999988 554444333  2             1111      358999999999


Q ss_pred             cCCCeeEEEecCC
Q 040384          149 PRGLVHFQLNVGK  161 (224)
Q Consensus       149 P~G~~H~~~N~G~  161 (224)
                      |+|..||++..+.
T Consensus       185 ~Pg~~H~F~ae~g  197 (246)
T 3kmh_A          185 PPGLYHSFWAEAG  197 (246)
T ss_dssp             CTTEEEEEEECTT
T ss_pred             CCCCEEEEEecCC
Confidence            9999999986654

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=96.34  E-value=0.014  Score=51.83  Aligned_cols=74  Identities=18%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             EEEEeCC-cccCceecCCCCceEEEEeCeEEEEEEeCCC-----------------------------------eEEEEE
Q 040384           96 RVDLAVG-GINPPHLHPRSSESSIVIRGTVLVGIITTDN-----------------------------------VFYSKV  139 (224)
Q Consensus        96 rv~l~pg-g~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-----------------------------------~~~~~~  139 (224)
                      .+-+.+. +..++|+.+. .-+..+++|+=++.+..+..                                   +.+..+
T Consensus       186 ~l~iG~~gs~t~~H~D~~-~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~  264 (349)
T 3d8c_A          186 LLLIGMEGNVTPAHYGEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETV  264 (349)
T ss_dssp             EEEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEE
T ss_pred             eEEEECCCCCccceECCh-hcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEE
Confidence            3556654 5678898865 57888999998888765421                                   346789


Q ss_pred             ECCCCEEEecCCCeeEEEecCC-ccEEEEEEe
Q 040384          140 VTAGMLFLIPRGLVHFQLNVGK-ENVLFFPSF  170 (224)
Q Consensus       140 l~~GDv~vvP~G~~H~~~N~G~-~~a~~~~~~  170 (224)
                      |++||+++||+|..|...|.++ ...+.+.+.
T Consensus       265 l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w  296 (349)
T 3d8c_A          265 VGPGDVLYIPMYWWHHIESLLNGGITITVNFW  296 (349)
T ss_dssp             ECTTCEEEECTTCEEEEEECTTSCCEEEEEEE
T ss_pred             ECCCCEEEECCCCcEEEEEcCCCCcEEEEEEE
Confidence            9999999999999999999873 334444443

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=95.88  E-value=0.031  Score=51.36  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=48.2

Q ss_pred             EEEEEeCCccc--CceecCCCCceEEEEeCeEEEEEEeCCC----------------eEEEEEECCCCEEEecCCCeeEE
Q 040384           95 NRVDLAVGGIN--PPHLHPRSSESSIVIRGTVLVGIITTDN----------------VFYSKVVTAGMLFLIPRGLVHFQ  156 (224)
Q Consensus        95 ~rv~l~pgg~~--~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~----------------~~~~~~l~~GDv~vvP~G~~H~~  156 (224)
                      ..+.+.|+|..  ++||-+ ..-++..++|+=+..+..+..                ..+..+|++||++++|+|++|+.
T Consensus       141 ~n~y~~~~g~~g~~~H~D~-~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~  219 (442)
T 2xdv_A          141 SNVYITPAGSQGLPPHYDD-VEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQA  219 (442)
T ss_dssp             EEEEEECTTCBCSCSEECS-SEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEE
T ss_pred             cceEECCCCCCCccceECC-cceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEE
Confidence            34456666643  599974 456777888988887766531                12468999999999999999999


Q ss_pred             EecC
Q 040384          157 LNVG  160 (224)
Q Consensus       157 ~N~G  160 (224)
                      .+.+
T Consensus       220 ~s~~  223 (442)
T 2xdv_A          220 DTPA  223 (442)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            8775

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=95.45  E-value=0.056  Score=47.86  Aligned_cols=67  Identities=15%  Similarity=0.194  Sum_probs=50.5

Q ss_pred             EEEEeCC-cccCceecCCCC-ceEEEEeCeEEEEEEeCCC---------------------------------------e
Q 040384           96 RVDLAVG-GINPPHLHPRSS-ESSIVIRGTVLVGIITTDN---------------------------------------V  134 (224)
Q Consensus        96 rv~l~pg-g~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~~---------------------------------------~  134 (224)
                      .+-+.+. ...+.|+++..+ -+..+++|+=+..+..++.                                       +
T Consensus       175 ~~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~  254 (336)
T 3k2o_A          175 WFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFK  254 (336)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGC
T ss_pred             EEEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCc
Confidence            3556664 456788887653 5888999988887775431                                       1


Q ss_pred             EEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384          135 FYSKVVTAGMLFLIPRGLVHFQLNVGKE  162 (224)
Q Consensus       135 ~~~~~l~~GDv~vvP~G~~H~~~N~G~~  162 (224)
                      .+...+++||++++|.|..|+..|.++.
T Consensus       255 ~~~~~l~pGd~l~iP~gw~H~v~~~~~s  282 (336)
T 3k2o_A          255 PLEILQKPGETVFVPGGWWHVVLNLDTT  282 (336)
T ss_dssp             CEEEEECTTCEEEECTTCEEEEEESSCE
T ss_pred             eEEEEECCCCEEEeCCCCcEEEecCCCe
Confidence            2467899999999999999999998753

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=95.39  E-value=0.05  Score=50.10  Aligned_cols=79  Identities=16%  Similarity=0.099  Sum_probs=56.1

Q ss_pred             EEEEeC-CcccCceecCCCC-ceEEEEeCeEEEEEEeCCC-------------------------eEEEEEECCCCEEEe
Q 040384           96 RVDLAV-GGINPPHLHPRSS-ESSIVIRGTVLVGIITTDN-------------------------VFYSKVVTAGMLFLI  148 (224)
Q Consensus        96 rv~l~p-gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~~-------------------------~~~~~~l~~GDv~vv  148 (224)
                      .+-|.| |...+.|+.+.++ -+..+++|+=+.-+..|..                         +.+...+++||+++|
T Consensus       199 ~~~mGp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfI  278 (451)
T 2yu1_A          199 YCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVI  278 (451)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEE
T ss_pred             EEEEccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEe
Confidence            345555 4466779988754 4667999998888876541                         235678999999999


Q ss_pred             cCCCeeEEEecCCccEEEEEEeeCCC
Q 040384          149 PRGLVHFQLNVGKENVLFFPSFNSQL  174 (224)
Q Consensus       149 P~G~~H~~~N~G~~~a~~~~~~~s~~  174 (224)
                      |.|+.|.+.|..+.-++-.-++++.|
T Consensus       279 PsGWwH~V~nledsIait~NF~~~~n  304 (451)
T 2yu1_A          279 PSGWIHAVYTPTDTLVFGGNFLHSFN  304 (451)
T ss_dssp             CTTCEEEEECSSCEEEEEEEECCSSS
T ss_pred             CCCceEEEecCCCeEEEeeeeCCccc
Confidence            99999999998654333233455544

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=95.30  E-value=0.03  Score=48.72  Aligned_cols=71  Identities=15%  Similarity=0.135  Sum_probs=48.0

Q ss_pred             EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC--CeE-----EEEEECCCCEEEecCCCeeEEEecCCccE
Q 040384           92 ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD--NVF-----YSKVVTAGMLFLIPRGLVHFQLNVGKENV  164 (224)
Q Consensus        92 is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~--~~~-----~~~~l~~GDv~vvP~G~~H~~~N~G~~~a  164 (224)
                      +..+|+.+.||+.+.||.=+  .|+....+|..++.+--..  +..     ....+++|+++++-....|+..|.|+++-
T Consensus        91 l~~vRlrL~PG~~I~~HrD~--~~l~~~~~~~~RlHIPL~Tnp~~~f~vdg~~~~m~~GE~w~~d~~~~H~v~N~g~~~R  168 (290)
T 1e5r_A           91 LQMARSRNLKNAIVIPHRDF--VELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISR  168 (290)
T ss_dssp             EEEEEEEEEESEEEEEECCC----------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCC
T ss_pred             hheEEEEeCCCCEeeCccCc--cccccccCCceEEEeeEecCCCcEEEECCEEEecCCCCEEEEcCCCeeEEEcCCCCCe
Confidence            47788899999999888443  3555555777766554221  111     25789999999999999999999998653

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=95.27  E-value=0.049  Score=48.00  Aligned_cols=74  Identities=14%  Similarity=0.053  Sum_probs=53.1

Q ss_pred             EEEEEEEEeCC-cccCceecCCCCceEEEEeCeEEEEEEeCCC------------------------------eEEEEEE
Q 040384           92 ISTNRVDLAVG-GINPPHLHPRSSESSIVIRGTVLVGIITTDN------------------------------VFYSKVV  140 (224)
Q Consensus        92 is~~rv~l~pg-g~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~------------------------------~~~~~~l  140 (224)
                      +....+-+.+. +...+|+-+. .-+..+++|+=+..+..+..                              +.+..+|
T Consensus       166 ~~~s~l~~g~~g~~~~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L  244 (338)
T 3al5_A          166 FFSSVFRISSPGLQLWTHYDVM-DNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSL  244 (338)
T ss_dssp             EEEEEEEEECTTCEEEEECCSS-EEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEE
T ss_pred             cccceeEECCCCCCccceECCc-ccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEE
Confidence            33344555554 4567798764 56777889998888765420                              2467899


Q ss_pred             CCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384          141 TAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       141 ~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ++||+++||+|+.|...|.+.  .+.+.
T Consensus       245 ~pGD~LyiP~gWwH~v~~l~~--sisvn  270 (338)
T 3al5_A          245 EAGDVLFIPALWFHNVISEEF--GVGVN  270 (338)
T ss_dssp             CTTCEEEECTTCEEEEEESSC--EEEEE
T ss_pred             CCCCEEEECCCCeEEEeeCCC--EEEEE
Confidence            999999999999999999853  44454

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=95.17  E-value=0.041  Score=51.15  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=50.6

Q ss_pred             EEEeC-CcccCceecCCCC-ceEEEEeCeEEEEEEeCC-------------------------CeEEEEEECCCCEEEec
Q 040384           97 VDLAV-GGINPPHLHPRSS-ESSIVIRGTVLVGIITTD-------------------------NVFYSKVVTAGMLFLIP  149 (224)
Q Consensus        97 v~l~p-gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~-------------------------~~~~~~~l~~GDv~vvP  149 (224)
                      +-|.| |...+.|+.+..+ -+..+++|+=+.-+..|.                         .+.+...+++||+++||
T Consensus       270 ~~mG~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIP  349 (488)
T 3kv5_D          270 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVP  349 (488)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeC
Confidence            45555 5567789998765 356799999888888663                         12356899999999999


Q ss_pred             CCCeeEEEecCC
Q 040384          150 RGLVHFQLNVGK  161 (224)
Q Consensus       150 ~G~~H~~~N~G~  161 (224)
                      .|+.|++.|..+
T Consensus       350 sGWwH~V~nled  361 (488)
T 3kv5_D          350 TGWIHAVLTSQD  361 (488)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCceEEeeCCCC
Confidence            999999999854

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=95.16  E-value=0.18  Score=43.25  Aligned_cols=72  Identities=24%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             ccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCee-EEEecCCccEEE
Q 040384           88 NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVH-FQLNVGKENVLF  166 (224)
Q Consensus        88 ~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H-~~~N~G~~~a~~  166 (224)
                      ..-|-|-.++.++|+--.|+-.|.--.| +||++|++.++     +    ..+.+|....+|+|+.- .+.-.|++++.+
T Consensus        87 ~d~GaSTl~V~fpp~~~~P~Gi~~ad~E-~fVL~G~i~~G-----~----~~l~~h~Y~f~PaGV~~~~~kv~~~~g~~i  156 (303)
T 2qdr_A           87 HDSGASTSRVVLPPKFEAPSGIFTADLE-IFVIKGAIQLG-----E----WQLNKHSYSFIPAGVRIGSWKVLGGEEAEI  156 (303)
T ss_dssp             CTTSCEEEEEEECTTCEECCBEESSCEE-EEEEESEEEET-----T----EEECTTEEEEECTTCCBCCEEEETTSCEEE
T ss_pred             CCCCcceEEEEecCCCCCCCcccccceE-EEEEEeEEEeC-----C----EEecCCceEEecCCCccCceeecCCCCcEE
Confidence            4457888999999999999988854456 99999998875     3    68999999999999843 355567788877


Q ss_pred             EEE
Q 040384          167 FPS  169 (224)
Q Consensus       167 ~~~  169 (224)
                      +-+
T Consensus       157 L~f  159 (303)
T 2qdr_A          157 LWM  159 (303)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=94.93  E-value=0.14  Score=47.66  Aligned_cols=69  Identities=19%  Similarity=0.245  Sum_probs=47.8

Q ss_pred             EEEEEeCCcc--cCceecCCCCceEEEEeCeEEEEEEeCCC--------------------eEEEEEECCCCEEEecCCC
Q 040384           95 NRVDLAVGGI--NPPHLHPRSSESSIVIRGTVLVGIITTDN--------------------VFYSKVVTAGMLFLIPRGL  152 (224)
Q Consensus        95 ~rv~l~pgg~--~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~--------------------~~~~~~l~~GDv~vvP~G~  152 (224)
                      +.+.+.|+|.  .+|||-+. .-++.-++|+=+..+..+..                    .....+|++||++++|+|+
T Consensus       166 ~N~Y~tp~Gs~g~~pH~D~~-DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~  244 (489)
T 4diq_A          166 SNVYLTPPNSQGFAPHYDDI-EAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGF  244 (489)
T ss_dssp             EEEEEECSSBCCSCCBCCSS-EEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTC
T ss_pred             ceEEecCCCcccccCccCCc-ceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCC
Confidence            3456667664  46998753 44555566766666655431                    1246899999999999999


Q ss_pred             eeEEEecCCccE
Q 040384          153 VHFQLNVGKENV  164 (224)
Q Consensus       153 ~H~~~N~G~~~a  164 (224)
                      +|+..+.+++..
T Consensus       245 ~H~~~s~~~~~S  256 (489)
T 4diq_A          245 IHQAECQDGVHS  256 (489)
T ss_dssp             EEEEEBCSSCCE
T ss_pred             ceEEEecCCCce
Confidence            999998865443

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=94.91  E-value=0.19  Score=43.19  Aligned_cols=65  Identities=18%  Similarity=0.144  Sum_probs=51.2

Q ss_pred             EEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC--CCeeEEEecCCccEEE
Q 040384           98 DLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR--GLVHFQLNVGKENVLF  166 (224)
Q Consensus        98 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~--G~~H~~~N~G~~~a~~  166 (224)
                      ...++.-.++|=|.+-.-+.||++|+++-.  |+-|.  ...+++||+=..-+  |..|.-+|..++++..
T Consensus        45 ~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~--DS~Gn--~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~  111 (277)
T 2p17_A           45 DIFERGTFDVHPHRGIETVTYVISGELEHF--DSKAG--HSTLGPGDVQWMTAGRGVVHKEDPASGSTVHS  111 (277)
T ss_dssp             EEECTTCCCCEEECSEEEEEEEEESCEEEE--ETTTE--EEEECTTCEEEEECTTCEEEEEEECTTCCEEE
T ss_pred             CCCCCCCCCCCCCCCcEEEEEEEEeEEEEe--eCCCC--ceEECCCeEEEEeCCCCEEEEeecCCCCCEEE
Confidence            667888899999955444779999998765  66565  68999999988876  6789999987666654

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=94.87  E-value=0.22  Score=42.86  Aligned_cols=92  Identities=16%  Similarity=0.189  Sum_probs=55.6

Q ss_pred             eEEEeecccCCCCccccEEEEEEEEeCCccc---CceecCCC--C------ceEEE-Ee---CeEEEEEEeCCC-eEEEE
Q 040384           75 AVTEGNVHEFPGVNTQGISTNRVDLAVGGIN---PPHLHPRS--S------ESSIV-IR---GTVLVGIITTDN-VFYSK  138 (224)
Q Consensus        75 ~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~---~pH~Hp~a--~------Ei~yV-l~---G~~~v~~v~~~~-~~~~~  138 (224)
                      .|......+.|   .-.+-+..+ +.|||.-   |||.|.+.  .      |+.|- +.   |-+.-.+-.+++ --...
T Consensus       139 ~V~~i~~~~~~---a~~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~  214 (270)
T 2qjv_A          139 LVHNILPDSQL---ADSLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECM  214 (270)
T ss_dssp             EEEEEECTTSC---CSSCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEEE
T ss_pred             hhhhhcCCCCC---cceEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceEE
Confidence            34344333444   334666666 8898865   99999764  5      88864 33   444333322222 12358


Q ss_pred             EECCCCEEEecCCCeeEEEecCCccEEEEEEee
Q 040384          139 VVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN  171 (224)
Q Consensus       139 ~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~  171 (224)
                      .++-||++.+|+|. |-....-.....++-++-
T Consensus       215 ~V~~~d~VlvP~Gy-Hp~~a~pGy~~YylwvMa  246 (270)
T 2qjv_A          215 AVYNRDVVXVPXGY-HPVATIAGYDNYYLNVMA  246 (270)
T ss_dssp             EEETTCEEEESSSB-CCEEECTTCEEEEEEEEE
T ss_pred             EEECCCEEecCCCc-CCCcCCCCcccEEEEEEE
Confidence            99999999999999 996544223344444443

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=94.87  E-value=0.091  Score=48.35  Aligned_cols=78  Identities=19%  Similarity=0.163  Sum_probs=55.0

Q ss_pred             EEEeC-CcccCceecCCCC-ceEEEEeCeEEEEEEeCCC-------------------------eEEEEEECCCCEEEec
Q 040384           97 VDLAV-GGINPPHLHPRSS-ESSIVIRGTVLVGIITTDN-------------------------VFYSKVVTAGMLFLIP  149 (224)
Q Consensus        97 v~l~p-gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~~-------------------------~~~~~~l~~GDv~vvP  149 (224)
                      +-+.| |+....|.-+..+ -+..|++|+=+.-+..|..                         +.+...+++||++++|
T Consensus       235 ~~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIP  314 (447)
T 3kv4_A          235 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  314 (447)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecC
Confidence            44554 5567789888765 3567999998888876541                         2356899999999999


Q ss_pred             CCCeeEEEecCCccEEEEEEeeCCC
Q 040384          150 RGLVHFQLNVGKENVLFFPSFNSQL  174 (224)
Q Consensus       150 ~G~~H~~~N~G~~~a~~~~~~~s~~  174 (224)
                      .|..|++.|..+.=++---++++.|
T Consensus       315 sGWwH~V~nledsIai~~NF~~~~n  339 (447)
T 3kv4_A          315 TGWIHAVLTPVDCLAFGGNFLHSLN  339 (447)
T ss_dssp             TTCEEEEEESSCEEEEEEEECCSTT
T ss_pred             CCCeEEEecCCCEEEEccccccccC
Confidence            9999999998654222223444443

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=94.84  E-value=0.21  Score=46.01  Aligned_cols=56  Identities=13%  Similarity=0.067  Sum_probs=43.8

Q ss_pred             cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384          105 NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus       105 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      ...-++-++.|++++.+|++++.-  +-|+   ..+++||++|||+|+.+.+.=.+  +++.+
T Consensus       170 ~~~f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRGi~frv~l~~--p~Rgy  225 (471)
T 1eyb_A          170 NRCFYNSDGDFLIVPQKGNLLIYT--EFGK---MLVQPNEICVIQRGMRFSIDVFE--ETRGY  225 (471)
T ss_dssp             SEEEEESSEEEEEEEEESCEEEEE--TTEE---EEECTTEEEEECTTCCEEEECSS--SEEEE
T ss_pred             cceeecCCCCEEEEEEeCCEEEEE--eccc---EEeccCCEEEECCccEEEEeeCC--CceEE
Confidence            345667789999999999998774  3354   67999999999999999986554  55443

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=94.75  E-value=0.068  Score=48.03  Aligned_cols=66  Identities=21%  Similarity=0.274  Sum_probs=50.7

Q ss_pred             EEEeC-CcccCceecCCCCc-eEEEEeCeEEEEEEeCCC-------------------------eEEEEEECCCCEEEec
Q 040384           97 VDLAV-GGINPPHLHPRSSE-SSIVIRGTVLVGIITTDN-------------------------VFYSKVVTAGMLFLIP  149 (224)
Q Consensus        97 v~l~p-gg~~~pH~Hp~a~E-i~yVl~G~~~v~~v~~~~-------------------------~~~~~~l~~GDv~vvP  149 (224)
                      +-+.| |+..+.|+.+..+- +..+++|+=+.-+..|..                         +.+...+++||++++|
T Consensus       151 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIP  230 (371)
T 3k3o_A          151 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  230 (371)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeC
Confidence            44554 55677899988664 557999998888875431                         2357899999999999


Q ss_pred             CCCeeEEEecCCc
Q 040384          150 RGLVHFQLNVGKE  162 (224)
Q Consensus       150 ~G~~H~~~N~G~~  162 (224)
                      .|..|++.|..+.
T Consensus       231 sGWwH~V~nledS  243 (371)
T 3k3o_A          231 TGWIHAVLTPVDC  243 (371)
T ss_dssp             TTCEEEEEEEEEE
T ss_pred             CCCeEEEecCCCe
Confidence            9999999997543

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=94.51  E-value=0.084  Score=47.85  Aligned_cols=66  Identities=20%  Similarity=0.281  Sum_probs=50.9

Q ss_pred             EEEEeC-CcccCceecCCCCc-eEEEEeCeEEEEEEeCCC-------------------------eEEEEEECCCCEEEe
Q 040384           96 RVDLAV-GGINPPHLHPRSSE-SSIVIRGTVLVGIITTDN-------------------------VFYSKVVTAGMLFLI  148 (224)
Q Consensus        96 rv~l~p-gg~~~pH~Hp~a~E-i~yVl~G~~~v~~v~~~~-------------------------~~~~~~l~~GDv~vv  148 (224)
                      .+-+.| |+..+.|+.+..+- +..+++|+=+.-+..|..                         +.+...+++||++++
T Consensus       178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfI  257 (397)
T 3kv9_A          178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFV  257 (397)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEE
T ss_pred             EEEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEe
Confidence            355655 55667799987654 567999998888876531                         235679999999999


Q ss_pred             cCCCeeEEEecCC
Q 040384          149 PRGLVHFQLNVGK  161 (224)
Q Consensus       149 P~G~~H~~~N~G~  161 (224)
                      |.|..|+..|..+
T Consensus       258 PsGW~H~V~nled  270 (397)
T 3kv9_A          258 PTGWIHAVLTSQD  270 (397)
T ss_dssp             CTTCEEEEEEEEE
T ss_pred             CCCCeEEccCCcC
Confidence            9999999999854

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=94.31  E-value=0.32  Score=42.08  Aligned_cols=88  Identities=16%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             CceEEEeecccCCCCcccc--EEEEEEEEeCCcccCceecCCCCceEEEE-eCeEEEEEEeCCCeEEEEEECCCCEEEec
Q 040384           73 GRAVTEGNVHEFPGVNTQG--ISTNRVDLAVGGINPPHLHPRSSESSIVI-RGTVLVGIITTDNVFYSKVVTAGMLFLIP  149 (224)
Q Consensus        73 g~~~~~~~~~~~P~l~~~g--is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl-~G~~~v~~v~~~~~~~~~~l~~GDv~vvP  149 (224)
                      |..++.+.  ..|.+...|  +-+....+.|+.-.++|=|.+-.-+.||+ +|+++-.  |+.|.  ...+++||+-..-
T Consensus        21 G~~v~R~~--~~~~~~~~gpf~~ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~--DS~Gn--~~~i~~GdvQwMt   94 (290)
T 1j1l_A           21 GARVRRSI--GRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE--DFCGH--TGKMNPGDLQWMT   94 (290)
T ss_dssp             TEEEEECT--TSTTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEE--ETTSC--EEEECTTCEEEEE
T ss_pred             CeEEEEeC--CCccccccCcEEEEEccccCCCCCCCCCCCCCeEEEEEECcceEEEEe--eCCCC--ceEECCCcEEEEe
Confidence            34444443  344444333  24445567788778999995543377999 9998765  65555  5899999998887


Q ss_pred             C--CCeeEEEecCCccEEE
Q 040384          150 R--GLVHFQLNVGKENVLF  166 (224)
Q Consensus       150 ~--G~~H~~~N~G~~~a~~  166 (224)
                      +  |..|.-+|..++++..
T Consensus        95 AG~GI~HsE~~~~~~~~~~  113 (290)
T 1j1l_A           95 AGRGILHAEMPCSEEPAHG  113 (290)
T ss_dssp             CTTCEEEEEEECSSSCEEE
T ss_pred             CCCCEEEEeEcCCCCCEEE
Confidence            5  6789999986666654

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=94.20  E-value=0.26  Score=40.42  Aligned_cols=89  Identities=12%  Similarity=0.130  Sum_probs=58.1

Q ss_pred             cccCCCCcccc-EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC-CeE-----EEEEECCCCEEEecCCCe
Q 040384           81 VHEFPGVNTQG-ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD-NVF-----YSKVVTAGMLFLIPRGLV  153 (224)
Q Consensus        81 ~~~~P~l~~~g-is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-~~~-----~~~~l~~GDv~vvP~G~~  153 (224)
                      .+++|.+.... -++....|.||+.+.||..+....+-+      -++++.++ +..     .....++|+.+++--...
T Consensus        90 L~~ip~~~~~~~~~a~fs~L~pG~~I~pH~g~~n~~lR~------HL~L~~p~~~~~i~V~~~~~~w~eGe~~~fDds~~  163 (197)
T 3rcq_A           90 LEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRM------HLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFE  163 (197)
T ss_dssp             HTTCHHHHTCTTCEEEEEEECTTEEEEEECCSCTTEEEE------EEEEECCSSSEEEEETTEEECCCBTCEEEECTTSC
T ss_pred             HHhCcccccCCcceEEEEEeCCCCCcCCeeCCCCCeEEE------EEEEEeCCCCcEEEECCEEEEeeCCcEEEEcCCeE
Confidence            35566544211 156778899999999999875433322      22333222 110     267899999999999999


Q ss_pred             eEEEecCCccEEEEEEeeCCCCc
Q 040384          154 HFQLNVGKENVLFFPSFNSQLPG  176 (224)
Q Consensus       154 H~~~N~G~~~a~~~~~~~s~~pg  176 (224)
                      |+..|.++++- ++.+++-..|.
T Consensus       164 Hev~N~~d~~R-vvL~~D~~rPd  185 (197)
T 3rcq_A          164 HEVWQDASSFR-LIFIVDVWHPE  185 (197)
T ss_dssp             EEEEECSSSCE-EEEEEEEECTT
T ss_pred             EEEEECCCCCE-EEEEEeeeCCC
Confidence            99999998754 44455544443

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=93.85  E-value=0.23  Score=42.94  Aligned_cols=56  Identities=9%  Similarity=-0.010  Sum_probs=41.4

Q ss_pred             EeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384           99 LAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus        99 l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      +.+|.....-.  ...-|+++++|+..+.+   +++  ++.|++||.+.||+|..|.+.-..+
T Consensus       214 ~G~Ges~~~~~--~~d~wiWqLEGss~Vt~---~~q--~~~L~~~DsLLIpa~~~y~~~r~~g  269 (286)
T 2qnk_A          214 YGQGSSEGLRQ--NVDVWLWQLEGSSVVTM---GGR--RLSLAPDDSLLVLAGTSYAWERTQG  269 (286)
T ss_dssp             ECSEEEEECCC--SSCEEEEEEESCEEEEE---TTE--EEEECTTEEEEECTTCCEEEEECTT
T ss_pred             EcCCccccccC--cCcEEEEEEcCceEEEE---CCe--EEeccCCCEEEecCCCeEEEEecCC
Confidence            66665432211  23678999999998776   555  7899999999999999999875433

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=93.84  E-value=0.14  Score=46.32  Aligned_cols=66  Identities=18%  Similarity=0.240  Sum_probs=50.3

Q ss_pred             EEEeC-CcccCceecCCCC-ceEEEEeCeEEEEEEeCCC-------------------------eEEEEEECCCCEEEec
Q 040384           97 VDLAV-GGINPPHLHPRSS-ESSIVIRGTVLVGIITTDN-------------------------VFYSKVVTAGMLFLIP  149 (224)
Q Consensus        97 v~l~p-gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~~-------------------------~~~~~~l~~GDv~vvP  149 (224)
                      +-+.| |+....|.-+.++ -+..+++|+=+.-+..|..                         +.+...+++||++++|
T Consensus       178 ~~mGp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIP  257 (392)
T 3pua_A          178 CLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIP  257 (392)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeC
Confidence            44554 5567789888765 4667999998887776531                         2357899999999999


Q ss_pred             CCCeeEEEecCCc
Q 040384          150 RGLVHFQLNVGKE  162 (224)
Q Consensus       150 ~G~~H~~~N~G~~  162 (224)
                      .|..|++.|..+.
T Consensus       258 sGWwH~V~nledS  270 (392)
T 3pua_A          258 SGWIYATLTPVDC  270 (392)
T ss_dssp             TTCEEEEEEEEEE
T ss_pred             CCceEEEecCCCE
Confidence            9999999998543

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=93.71  E-value=2  Score=35.84  Aligned_cols=148  Identities=16%  Similarity=0.166  Sum_probs=89.7

Q ss_pred             CCccCCCeeeeccCCCcccCCCCceEEEeecccCC------CCccccEEEEEEEEeCCcccCceecC-CCCceEEEEeCe
Q 040384           51 TEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFP------GVNTQGISTNRVDLAVGGINPPHLHP-RSSESSIVIRGT  123 (224)
Q Consensus        51 ~~vt~~df~f~l~~~~~~~~~~g~~~~~~~~~~~P------~l~~~gis~~rv~l~pgg~~~pH~Hp-~a~Ei~yVl~G~  123 (224)
                      ...++++++=.|.-.+   .+.||..++.+....-      +-+ ...+....-|.+|..  -|||- ++.|+.+-..|.
T Consensus        17 ~~~ta~~lI~~L~L~P---HPEGG~yrEt~Rs~~~v~~~~~~~R-~~~TaIYfLL~~g~~--S~~HRv~sdEiW~~h~G~   90 (225)
T 3m3i_A           17 PQNTAEFWIKRLQLVP---HPEGGYYSEVVRSAHKVDNEEGNRR-HAYTTIYFLCTPESP--SHLHRLCSDETWMYHAGD   90 (225)
T ss_dssp             -CCCHHHHHHHTTCEE---CTTSSEEEEEEECSSEEECTTSCEE-ESCEEEEEEECSSSC--EEEEECSSEEEEEEEEES
T ss_pred             CCCCHHHHHHHCCCcc---CCCCceEEEEEECCCcccCCCCCCc-ccceeEEEEecCCCC--cccEEecCCEEEEEECCC
Confidence            3445555543332222   4688988888765442      111 124555566777775  46662 588999999997


Q ss_pred             -EEEEEEeCCC----------------------------eEEEEEE----CCCC--EEEecCCCeeEEEecCCc-----c
Q 040384          124 -VLVGIITTDN----------------------------VFYSKVV----TAGM--LFLIPRGLVHFQLNVGKE-----N  163 (224)
Q Consensus       124 -~~v~~v~~~~----------------------------~~~~~~l----~~GD--v~vvP~G~~H~~~N~G~~-----~  163 (224)
                       +++.++.++|                            +..+..|    .+|+  -++||.|.+....-.+++     .
T Consensus        91 pL~l~li~~dG~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~  170 (225)
T 3m3i_A           91 PLQLHVILKDPQDEDRIAAQPPAAPQAETDTADARPKYQVYRRVLVGARVERGELLQYTVPGGAIFGSSVAADGADGQAG  170 (225)
T ss_dssp             CEEEEEEESSSTTTTC------------------CCSSCEEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSS
T ss_pred             CEEEEEEcCCCcccccccccccccccccccccccccccCceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCC
Confidence             6788888777                            4555666    3466  578999998777655543     3


Q ss_pred             EEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 040384          164 VLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKA  212 (224)
Q Consensus       164 a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~~  212 (224)
                      ..+++..  -.||+..-...+      ++.+-|.+.|.--++.|++|-.
T Consensus       171 ~sLVsCt--VaPGFdF~DFel------~~~~~L~~~~P~~~~~I~~lt~  211 (225)
T 3m3i_A          171 YSLVSCI--VSPGFDYRDFEI------FTQAQLMELYPQHEAVIKQMAY  211 (225)
T ss_dssp             CEEEEEE--EESCCCGGGCEE------CBHHHHHHHCGGGHHHHHHHSB
T ss_pred             eEEEEEE--EcCCccchhcEe------cCHHHHHHHCchHHHHHHHhch
Confidence            3444322  235554433222      4566677777777778887753

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=93.34  E-value=2.5  Score=33.77  Aligned_cols=128  Identities=18%  Similarity=0.194  Sum_probs=83.2

Q ss_pred             CCC-CceEEEeecccC-------CCCccccEEEEEEEEeCCcccCceecC-CCCceEEEEeCe-EEEEEEeCCCeEEEEE
Q 040384           70 NAF-GRAVTEGNVHEF-------PGVNTQGISTNRVDLAVGGINPPHLHP-RSSESSIVIRGT-VLVGIITTDNVFYSKV  139 (224)
Q Consensus        70 ~~~-g~~~~~~~~~~~-------P~l~~~gis~~rv~l~pgg~~~pH~Hp-~a~Ei~yVl~G~-~~v~~v~~~~~~~~~~  139 (224)
                      .+. ||..++......       .+-+ ...+....-|.+|...  |||- ++.|+.+-..|. +++.+++++|+..+..
T Consensus        24 HPEEGG~yrEt~rs~~~v~~~~~~~~R-~~~TaIYfLL~~~~~S--~~HRv~sdEiW~~~~G~pL~l~~~~~dG~~~~~~  100 (172)
T 3loi_A           24 HPASGGWFRETYRSDVQVEAEGFDGKR-SVLTMIYYLMQAGQPD--PFHRVKSDETFVHNLGGSMKIHMIHPDGSYSCSI  100 (172)
T ss_dssp             CTTSSSEEEEEEECSCEECCTTSSSCE-ESCEEEEEEEETTCCE--EEEECSSEEEEEEEEESCEEEEEECTTSCEEEEE
T ss_pred             CCcCCCeEEEEEECcCcccCCCCCCCc-ccceEEEEEEcCCCCc--cCEEecCCEEEEEEcCCCEEEEEEcCCCceEEEE
Confidence            466 888888776532       2222 2346666677888754  5552 589999999996 6899999888776766


Q ss_pred             E----CCCC---EEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 040384          140 V----TAGM---LFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIK  211 (224)
Q Consensus       140 l----~~GD---v~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~  211 (224)
                      |    .+|+   -++||+|.+..... |  ...+++..  -.||+..-...+      .+.+-|.+.|.--++.|++|-
T Consensus       101 LG~d~~~Ge~~pQ~vVP~G~WqaA~~-~--~~~LVsct--VaPGF~f~dfel------~~~~~L~~~~P~~~~~I~~lt  168 (172)
T 3loi_A          101 LGNPLEHPEARHQVVVPRRVWFAQEV-D--GYCLASVL--VAPGFDFKDFSL------GKREELIKEYPQHRDVIMRCT  168 (172)
T ss_dssp             ESCTTTSTTCBSEEEECTTCEEEEEE-S--SEEEEEEE--EESCCCGGGCEE------CCHHHHHHHCGGGHHHHHHTS
T ss_pred             eCCCcccCCcceEEEECCCEEEEEEe-C--CcEEEEEE--EcCCccchhcEE------cCHHHHHHHCchHHHHHHHhc
Confidence            6    4678   78999999877665 3  23333322  235554433222      456667777776677777764

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=92.79  E-value=0.68  Score=33.51  Aligned_cols=61  Identities=11%  Similarity=0.049  Sum_probs=45.2

Q ss_pred             EEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384           93 STNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV  159 (224)
Q Consensus        93 s~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~  159 (224)
                      ....-.|.||-   .+....+.|++-|++|++++.+-   |....+++++||.|.+|.+.-.-++..
T Consensus        24 ~~TvGVm~pGe---ytF~T~~~E~M~vvsG~~~V~lp---g~~ew~~~~aGesF~Vpans~F~l~v~   84 (94)
T 2oyz_A           24 DVSVGVMLPGE---YTFGTQAPERMTVVKGALVVKRV---GEADWTTYSSGESFDVEGNSSFELQVK   84 (94)
T ss_dssp             EEEEEEECSEE---EEEEESSCEEEEEEESEEEEEET---TCSSCEEEETTCEEEECSSEEEEEEES
T ss_pred             CEEEEEEeceE---EEEcCCCeEEEEEEEeEEEEEcC---CCCcCEEECCCCEEEECCCCEEEEEEc
Confidence            33444567765   34455689999999999999873   322378999999999999987666543

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=92.44  E-value=0.22  Score=46.63  Aligned_cols=65  Identities=20%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             EEEeC-CcccCceecCCCC-ceEEEEeCeEEEEEEeCCC-------------------------eEEEEEECCCCEEEec
Q 040384           97 VDLAV-GGINPPHLHPRSS-ESSIVIRGTVLVGIITTDN-------------------------VFYSKVVTAGMLFLIP  149 (224)
Q Consensus        97 v~l~p-gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~~-------------------------~~~~~~l~~GDv~vvP  149 (224)
                      +-+.| |+....|.-+.++ -+.+|++|+=+.-++.|..                         +.+...+++||+++||
T Consensus       300 ~lmg~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIP  379 (528)
T 3pur_A          300 CLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIP  379 (528)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEec
Confidence            44444 5566788887765 4667999998887776541                         2246789999999999


Q ss_pred             CCCeeEEEecCC
Q 040384          150 RGLVHFQLNVGK  161 (224)
Q Consensus       150 ~G~~H~~~N~G~  161 (224)
                      .|.+|+++|..+
T Consensus       380 sGW~HaV~tleD  391 (528)
T 3pur_A          380 AGWIHAVLTPVD  391 (528)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCceEEEecCCC
Confidence            999999999754

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A

Probab=92.43  E-value=0.29  Score=40.32  Aligned_cols=73  Identities=23%  Similarity=0.255  Sum_probs=45.4

Q ss_pred             EEEEEeCCcccCceecCCCC--ceEEEEe--CeEEEEEEeCC------------------CeEEEEEECCCCEEEecCCC
Q 040384           95 NRVDLAVGGINPPHLHPRSS--ESSIVIR--GTVLVGIITTD------------------NVFYSKVVTAGMLFLIPRGL  152 (224)
Q Consensus        95 ~rv~l~pgg~~~pH~Hp~a~--Ei~yVl~--G~~~v~~v~~~------------------~~~~~~~l~~GDv~vvP~G~  152 (224)
                      =...+++|+...+|.|+++.  -++|+-.  +.+.+.|.++.                  .......-++||+++||.-+
T Consensus       106 W~~~~~~G~~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~~~~~~~~~~~~i~P~~G~lvlFpS~l  185 (216)
T 2rg4_A          106 WINILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVAPKVGDVLLWESWL  185 (216)
T ss_dssp             EEEEECTTCCEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCCCSCGGGCSEEEECCCTTEEEEEETTS
T ss_pred             EEEEcCCCCcccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCcccccCcccCCCeeEecCCCCeEEEECCCC
Confidence            34567889999999998642  2334433  22334444542                  11124566999999999999


Q ss_pred             eeEEEe-cCCccEEEE
Q 040384          153 VHFQLN-VGKENVLFF  167 (224)
Q Consensus       153 ~H~~~N-~G~~~a~~~  167 (224)
                      .|.+.- .++++-+-+
T Consensus       186 ~H~V~p~~~~~~RiSI  201 (216)
T 2rg4_A          186 RHEVPMNMAEEDRISV  201 (216)
T ss_dssp             CEEECCCCSSSCEEEE
T ss_pred             EEeccCCCCCCCEEEE
Confidence            999864 344443333

>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*

Probab=91.31  E-value=5.3  Score=32.75  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=85.7

Q ss_pred             CccCCCeeeeccCCCcccCCCCceEEEeecccC----CC--Cc--------ccc-EEEEEEEEeCCc-ccCceecCCCCc
Q 040384           52 EVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEF----PG--VN--------TQG-ISTNRVDLAVGG-INPPHLHPRSSE  115 (224)
Q Consensus        52 ~vt~~df~f~l~~~~~~~~~~g~~~~~~~~~~~----P~--l~--------~~g-is~~rv~l~pgg-~~~pH~Hp~a~E  115 (224)
                      ..++++++=.|.-.+   .+.||..++......    +.  +.        ... .+....-|.+++ ....|-- ++.|
T Consensus        27 ~~~a~~lI~~L~L~P---HPEGG~yrET~Rs~~~~~~~~~~~~~~~~~~~~~R~~~TaIYfLL~~~~~~S~wHRv-~sdE  102 (203)
T 1xe7_A           27 PSSLQQLINDWQLIK---HREGGYFKETDRSPYTMEVEKPVNGGSGNTEMVTRNQSTLIYYLLTPDSPIGKFHKN-INRI  102 (203)
T ss_dssp             CHHHHHHHHHHTCEE---CTTSSEEEEEEECSCEEEECCCC--------CEEEESCEEEEEEEBTTBCEEEEEEE-SSCE
T ss_pred             CCCHHHHHHHcCCcc---CCCCceEEEEEecccccccCccccccccccCCCCccceeEEEEEEcCCCCcccceee-CCCE
Confidence            445555443332222   568998888775532    11  11        112 345555566675 4544444 5899


Q ss_pred             eEEEEeCeEEEEEEeCCCeEEEEEECC----CC--EEEecCCCeeEEEec-CCcc--EEEEEEeeCCCCcceehhhhhhc
Q 040384          116 SSIVIRGTVLVGIITTDNVFYSKVVTA----GM--LFLIPRGLVHFQLNV-GKEN--VLFFPSFNSQLPGTQFVHSSLFN  186 (224)
Q Consensus       116 i~yVl~G~~~v~~v~~~~~~~~~~l~~----GD--v~vvP~G~~H~~~N~-G~~~--a~~~~~~~s~~pg~~~~~~~lf~  186 (224)
                      +.+-..|....-++.++|+..+..|..    |+  -++||+|.+...... +.+-  ..+++..  -.||+..-...+  
T Consensus       103 iW~~h~G~p~~~li~~dg~~~~~~LG~dl~~Ge~pQ~vVPaG~WqaA~~~~~~~~~~~tLVgCt--VaPGFdF~dFel--  178 (203)
T 1xe7_A          103 IHILQRGKGQYVLVYPDGQVKSFKVGFDYKNGEVSQWVVPGGVFKASFLLPNEEFDNGFLISEV--VVPGFDFEDHTF--  178 (203)
T ss_dssp             EEEEEEECEEEEEECTTSCEEEEEESSCGGGTCBSEEEECTTCEEEEEECCCTTTTTCEEEEEE--ESSCCCGGGEEE--
T ss_pred             EEEEEcCCccEEEEcCCCCEEEEEeCCCcccCcccEEEEcCCEEEEeEecCCCCcccceEEEEE--ecCCccchhcEe--
Confidence            999999966656778888766666643    55  489999988776544 2222  1344332  236654433222  


Q ss_pred             CCCCCCHH-HHHhhcCCCHHHHHHHHhc
Q 040384          187 TTPPIPNE-VLTKTFLVGDEVINAIKAA  213 (224)
Q Consensus       187 ~~p~~p~e-vla~af~v~~~~v~~l~~~  213 (224)
                          .+.+ -|.+-|.  ++.++.|+-.
T Consensus       179 ----~~~~~~L~~~~P--~~~~~~l~~l  200 (203)
T 1xe7_A          179 ----LKGEDELKHLVG--PEKAAELAFL  200 (203)
T ss_dssp             ----CCHHHHHHHHHC--HHHHHHTGGG
T ss_pred             ----cCCcHHHHHHCC--HHHHHHHHHH
Confidence                4455 5555564  7888887643

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=90.55  E-value=1.3  Score=38.26  Aligned_cols=75  Identities=20%  Similarity=0.234  Sum_probs=48.5

Q ss_pred             CccccEEEEEEEEeCCc---ccCceecCCCCceEEEEe----CeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384           87 VNTQGISTNRVDLAVGG---INPPHLHPRSSESSIVIR----GTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV  159 (224)
Q Consensus        87 l~~~gis~~rv~l~pgg---~~~pH~Hp~a~Ei~yVl~----G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~  159 (224)
                      ++.-.+-+..-.+.|||   ..|||.|.+..|..|--+    |. .++++.+.++.....++-||++++|....|.  -.
T Consensus       175 ~~~~qllmg~evltpgg~WSSyPpHkHDrr~EeyyYF~l~~~gf-v~q~~g~p~Etrhi~V~n~daVlvP~wh~h~--~~  251 (282)
T 1xru_A          175 LETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDAC-VFHMMGQPQETRHIVMHNEQAVISPSWSIHS--GV  251 (282)
T ss_dssp             CCCSSCEEEEEEECTTCCEESCSEEECTTEEEEEEEESCCTTCC-EEEEEEETTEEEEEEECSSEEEEECTTCEEE--EE
T ss_pred             CchhhEEEEEEEEeCCCCcCCCCCccCCCCceEEEEEEeCCCCE-EEEEeCCCCCeeEEEEECCCEEEeCCCCCCC--CC
Confidence            34345667777888888   369999977666666443    33 3444443344344578999999999656666  34


Q ss_pred             CCccE
Q 040384          160 GKENV  164 (224)
Q Consensus       160 G~~~a  164 (224)
                      |.+.-
T Consensus       252 G~~~Y  256 (282)
T 1xru_A          252 GTKAY  256 (282)
T ss_dssp             ESSCC
T ss_pred             Cccce
Confidence            66554

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=90.48  E-value=1.1  Score=33.31  Aligned_cols=67  Identities=18%  Similarity=0.154  Sum_probs=48.6

Q ss_pred             EEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           97 VDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        97 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      -.|.||- .+.+....+.|+.-|++|++++.+-   |...++++++|+.|.+|.+.-.-++..  ++...++.
T Consensus        42 GVm~PGe-~~YtF~T~~~E~MevvsG~l~V~Lp---g~~eW~~~~aGesF~VpanssF~lkv~--~~~~Y~C~  108 (111)
T 3hqx_A           42 GVILPTE-QPLTFETHVPERMEIISGECRVKIA---DSTESELFRAGQSFYVPGNSLFKIETD--EVLDYVCH  108 (111)
T ss_dssp             EEECCCS-SCEEEECSSCEEEEEEESEEEEEET---TCSSCEEEETTCEEEECTTCEEEEECS--SCEEEEEE
T ss_pred             EEEeccc-cceEEcCCCcEEEEEEEeEEEEEcC---CcccCEEeCCCCEEEECCCCcEEEEEC--cceeEEEE
Confidence            4567762 2356667789999999999999873   322478999999999999988766543  34444443

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=89.04  E-value=1.7  Score=34.18  Aligned_cols=125  Identities=14%  Similarity=0.027  Sum_probs=76.2

Q ss_pred             EEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EEEEEECCCCEEEec-----CC--CeeEEEecCCccEEE
Q 040384           95 NRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FYSKVVTAGMLFLIP-----RG--LVHFQLNVGKENVLF  166 (224)
Q Consensus        95 ~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~GDv~vvP-----~G--~~H~~~N~G~~~a~~  166 (224)
                      ....+++|..+-.. ......+.+|++|.+++...+++|+ .....+.+||++.+.     .+  ..+.....  ++..+
T Consensus        27 ~~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~--~~~~~  103 (220)
T 3dv8_A           27 ITQHVKKGTIIHNG-NMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAE--KDTDL  103 (220)
T ss_dssp             EEEEECTTCEEEEG-GGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCCCEEEES--SCEEE
T ss_pred             ceEEeCCCCEEECC-CCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCceEEEEe--eeeEE
Confidence            35667777765322 2235789999999999998887765 345678999996321     12  22223332  34444


Q ss_pred             EEEee-------CCCCccee----------------------------hhh------hhhcC-CCCCCHHHHHhhcCCCH
Q 040384          167 FPSFN-------SQLPGTQF----------------------------VHS------SLFNT-TPPIPNEVLTKTFLVGD  204 (224)
Q Consensus       167 ~~~~~-------s~~pg~~~----------------------------~~~------~lf~~-~p~~p~evla~af~v~~  204 (224)
                      +.+=.       ..+|....                            ++.      ...+. .-.++.+-||...|++.
T Consensus       104 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr  183 (220)
T 3dv8_A          104 WIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHR  183 (220)
T ss_dssp             EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCH
T ss_pred             EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCH
Confidence            43211       12333210                            000      11110 00288999999999999


Q ss_pred             HHHHHHHhccCCCcceec
Q 040384          205 EVINAIKAAITSAQLGHR  222 (224)
Q Consensus       205 ~~v~~l~~~~~~~~~i~r  222 (224)
                      +.+.++.+.+.+.++|..
T Consensus       184 ~tvsR~l~~L~~~g~I~~  201 (220)
T 3dv8_A          184 EVITRMLRYFQVEGLVKL  201 (220)
T ss_dssp             HHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHHCCCEEe
Confidence            999999999888888754

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=88.58  E-value=1.1  Score=40.23  Aligned_cols=58  Identities=16%  Similarity=0.158  Sum_probs=41.9

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQ  156 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~  156 (224)
                      .+++.++++.++..   +.-.++..++.|++|++++..   +++  ...|++||.+++|.+...+.
T Consensus       323 ~F~v~~~~l~~~~~---~~~~~~~~il~v~~G~~~l~~---~~~--~~~l~~G~~~fvpa~~~~~~  380 (394)
T 2wfp_A          323 DFAFSLHDLALQET---SIGQHSAAILFCVEGEAVLRK---DEQ--RLVLKPGESAFIGADESPVN  380 (394)
T ss_dssp             SCEEEEEECCSSCE---EECCSSCEEEEEEEEEEEEEE---TTE--EEEECTTCEEEECGGGCCEE
T ss_pred             EEEEEEEEEcCCeE---EecCCCcEEEEEEeceEEEEE---CCe--EEEEccCcEEEEeCCCceEE
Confidence            57788888875522   222256789999999998763   333  57999999999999864443

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=88.39  E-value=2  Score=33.95  Aligned_cols=122  Identities=10%  Similarity=0.023  Sum_probs=75.5

Q ss_pred             EEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEee--
Q 040384           95 NRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN--  171 (224)
Q Consensus        95 ~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~--  171 (224)
                      ....+++|..+-.. ...+..+.+|++|.+++. .+++|+ .....+.+||++-  ....+.....  ++..++.+=.  
T Consensus        24 ~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG--~~~~~~~~A~--~~~~v~~i~~~~   97 (222)
T 1ft9_A           24 RSKIHAKGSLVCTG-EGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC--MHSGCLVEAT--ERTEVRFADIRT   97 (222)
T ss_dssp             EEEEECTTCEEECT-TCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE--SCSSCEEEES--SCEEEEEECHHH
T ss_pred             cEEEECCCCEEECC-CCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec--CCCCEEEEEc--cceEEEEEeHHH
Confidence            45667777765322 223567999999999995 666665 3456889999998  3333344433  3444443211  


Q ss_pred             -----CCCCccee----------------------------hhhhhh------cC--------CCCCCHHHHHhhcCCCH
Q 040384          172 -----SQLPGTQF----------------------------VHSSLF------NT--------TPPIPNEVLTKTFLVGD  204 (224)
Q Consensus       172 -----s~~pg~~~----------------------------~~~~lf------~~--------~p~~p~evla~af~v~~  204 (224)
                           ..+|....                            ++..+.      +.        ...++.+-||...|++.
T Consensus        98 ~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr  177 (222)
T 1ft9_A           98 FEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSR  177 (222)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCH
T ss_pred             HHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcH
Confidence                 12444311                            001110      00        01278999999999999


Q ss_pred             HHHHHHHhccCCCcceec
Q 040384          205 EVINAIKAAITSAQLGHR  222 (224)
Q Consensus       205 ~~v~~l~~~~~~~~~i~r  222 (224)
                      +++.++.+.+.+.++|.+
T Consensus       178 ~tvsR~l~~L~~~g~I~~  195 (222)
T 1ft9_A          178 QTTSTALNSLIKEGYISR  195 (222)
T ss_dssp             HHHHHHHHHHHHTTSSEE
T ss_pred             HHHHHHHHHHHHCCcEEE
Confidence            999999998888888754

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=87.77  E-value=2.4  Score=36.95  Aligned_cols=58  Identities=19%  Similarity=0.210  Sum_probs=41.8

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQ  156 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~  156 (224)
                      -+++.++++..+...   ...+...++.|++|++++..   +++  ...|++||.+++|++.-.+.
T Consensus       250 ~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~l~~---~~~--~~~l~~G~~~~vpa~~~~~~  307 (319)
T 1qwr_A          250 YFSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKY---EDK--TCPLKKGDHFILPAQMPDFT  307 (319)
T ss_dssp             SCEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCCCEE
T ss_pred             EEEEEEEEECCceEE---ccCCccEEEEEEcCeEEEEE---CCE--EEEEcCCcEEEEeCCCceEE
Confidence            467778887744322   22356789999999998864   344  56899999999999874443

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=87.40  E-value=1.1  Score=33.18  Aligned_cols=56  Identities=18%  Similarity=0.049  Sum_probs=43.3

Q ss_pred             EEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384           97 VDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN  158 (224)
Q Consensus        97 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N  158 (224)
                      -.|.||-   .+....+.|++-|++|++++.+-   |...++++++||.|.+|.+.-.-++.
T Consensus        41 GVm~PGe---Y~F~T~~~E~MevvsG~l~V~Lp---G~~eW~~~~aGesF~VpanssF~lkv   96 (106)
T 3eo6_A           41 TLLHPGV---YTLSSEVAETIRVLSGMAYYHAE---GANDVQELHAGDSMVIPANQSYRLEV   96 (106)
T ss_dssp             EEECSEE---EEECCSSCEEEEEEEEEEEEECT---TCSSCEEEETTCEEEECSSSCEEEEE
T ss_pred             EEEeeeE---EEecCCCcEEEEEEEeEEEEECC---CCccCEEECCCCEEEECCCCcEEEEE
Confidence            4566763   45666789999999999999872   32247899999999999998766653

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=87.24  E-value=2.7  Score=38.40  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=47.1

Q ss_pred             cEEEEEEEEe--CCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec---CCccEE
Q 040384           91 GISTNRVDLA--VGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV---GKENVL  165 (224)
Q Consensus        91 gis~~rv~l~--pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~---G~~~a~  165 (224)
                      .+++.++++.  +++... ........+++|++|++++..  .+++.....|++||++++|.+..-.+.+.   +.+.+.
T Consensus       356 eF~v~~~~~~~~~~~~~~-~~~~~~~~illv~~G~g~i~~--~~~~~~~~~l~~G~~~fvpa~~~~~i~g~~~~~~~~~~  432 (440)
T 1pmi_A          356 EFSVLQTIFDKSKGGKQV-IEGLNGPSIVIATNGKGTIQI--TGDDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFT  432 (440)
T ss_dssp             SCEEEEEECCTTTCCEEE-ECCCSSCEEEEEEESEEEEEE--TTCGGGCEEEETTCEEEECTTCCEEEEECSSCCSSCCE
T ss_pred             eEEEEEEEecCCCCceeE-EecCCCcEEEEEEeCeEEEEe--CCcccceEEeccCCEEEEeCCCcEEEEEecccCCCcEE
Confidence            5788888887  342211 112246789999999999875  12210004899999999999843334443   134455


Q ss_pred             EEEEe
Q 040384          166 FFPSF  170 (224)
Q Consensus       166 ~~~~~  170 (224)
                      ++.++
T Consensus       433 ~~~a~  437 (440)
T 1pmi_A          433 TYRAF  437 (440)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=86.63  E-value=2.5  Score=31.76  Aligned_cols=62  Identities=16%  Similarity=0.077  Sum_probs=41.6

Q ss_pred             cccCceecCCC-CceEEEEeCeEEEEEEeCCCe---EEEEEECCCCEEEecCCCeeEEEecCCccEEE
Q 040384          103 GINPPHLHPRS-SESSIVIRGTVLVGIITTDNV---FYSKVVTAGMLFLIPRGLVHFQLNVGKENVLF  166 (224)
Q Consensus       103 g~~~pH~Hp~a-~Ei~yVl~G~~~v~~v~~~~~---~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~  166 (224)
                      ++...|.-... -..+-|++|+++....++++.   .....+.+|+.-++|+..+|.+.-.+  ++.+
T Consensus        27 ~l~~~HnTK~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sd--D~~f   92 (119)
T 3dl3_A           27 ALLTHHNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSD--DAQF   92 (119)
T ss_dssp             HHHSSBCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECT--TCEE
T ss_pred             HHHhccCCCCcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECC--CeEE
Confidence            44445533221 234579999999887664432   23468899999999999999999333  4454

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=86.58  E-value=6.2  Score=33.92  Aligned_cols=78  Identities=12%  Similarity=0.026  Sum_probs=50.2

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ...+.+..+.|++|+.......+...-++||++|++.++    +++ ....+.++.+++...|..-.+.+.+.+++.++.
T Consensus       166 ~~~~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v~----g~~-~~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LL  240 (290)
T 1j1l_A          166 RTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIG----PDD-AQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL  240 (290)
T ss_dssp             SSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEES----CTT-SCEEECTTEEEEECSCSEEEEECCSSSCEEEEE
T ss_pred             cCCcEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEEC----Ccc-cceeccCceEEEecCCCEEEEEEcCCCCcEEEE
Confidence            346888899999999774443334457899999999874    110 013566777777776665555554455666654


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      +-.
T Consensus       241 l~G  243 (290)
T 1j1l_A          241 IAG  243 (290)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            433

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=86.45  E-value=3.4  Score=35.67  Aligned_cols=68  Identities=15%  Similarity=0.161  Sum_probs=37.4

Q ss_pred             CccccEEEEEEEEeCCcc---cCceecCCCCceEEEEe----CeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeE
Q 040384           87 VNTQGISTNRVDLAVGGI---NPPHLHPRSSESSIVIR----GTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHF  155 (224)
Q Consensus        87 l~~~gis~~rv~l~pgg~---~~pH~Hp~a~Ei~yVl~----G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~  155 (224)
                      +....+-+..-.+.|||.   .|||.|.+..|..|--+    |. .+.+..+-++.....++-||++++|+|-.|.
T Consensus       175 ~~s~qllmg~evltpGg~WSSyPpHkHDrr~E~yyYF~l~p~~~-v~h~~g~pdEtrh~~V~n~daVlvP~wgyHp  249 (289)
T 1ywk_A          175 CESCQLQMGYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTR-IFHMMGKPDETKHLVMSNEQAAISPSWSIHS  249 (289)
T ss_dssp             CCCSSCEEEEEEECTTCCCCC--------CEEEEEEESCCTTCC-EEEEESSTTSCEEEEECTTEEEEECTTSCCC
T ss_pred             CchheEEEEEEEEeCCCCcCCCCCccCCCCCeeEEEEEeCCCCe-EEEECCCCCceEEEEEECCCEEEeCCCcccC
Confidence            333455677778888883   58999987667665332    22 2222222233334678999999999998886

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=86.07  E-value=1.9  Score=36.12  Aligned_cols=68  Identities=10%  Similarity=-0.030  Sum_probs=46.6

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ..+.+..+.|++|+....-..++..-++||++|+++++     +    ..+++||.+++..+..-.+.+.  +++.++.
T Consensus       158 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v~-----g----~~l~~gd~~~~~~~~~l~l~a~--~~a~~Ll  225 (242)
T 1tq5_A          158 QDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTIN-----G----VKASTSDGLAIWDEQAISIHAD--SDSEVLL  225 (242)
T ss_dssp             SSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEET-----T----EEEETTCEEEEESCSCEEEEES--SSEEEEE
T ss_pred             CCCEEEEEEECCCCEEEeecCCCcEEEEEEccCcEEEC-----C----EEeCCCCEEEECCCCeEEEEeC--CCCEEEE
Confidence            36788889999998764333334456799999998763     4    3699999999987654344442  3455443

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=85.81  E-value=3.8  Score=32.19  Aligned_cols=120  Identities=13%  Similarity=0.149  Sum_probs=76.2

Q ss_pred             EEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe-EEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEee--
Q 040384           95 NRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV-FYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFN--  171 (224)
Q Consensus        95 ~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~-~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~--  171 (224)
                      ....+++|..+-.- -..+..+.+|++|.+++ ..+++|+ .....+.+||++-.|.  .+.....  ++..++.+=.  
T Consensus        28 ~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~-~~~~~G~~~~~~~~~~G~~~G~~~--~~~~~A~--~~~~v~~i~~~~  101 (220)
T 2fmy_A           28 REQRYSKKAILYTP-NTERNLVFLVKSGRVRV-YLAYEDKEFTLAILEAGDIFCTHT--RAFIQAM--EDTTILYTDIRN  101 (220)
T ss_dssp             EEEEECTTCEEECT-TCSSCEEEEEEESEEEE-EEECSSCEEEEEEEETTCEEESCS--SSEEEES--SSEEEEEEEHHH
T ss_pred             heeEeCCCCEEECC-CCCCCeEEEEEecEEEE-EECCCCCEEEEEEcCCCCEeCCcc--ceEEEEc--CcEEEEEEeHHH
Confidence            45667777765321 22356899999999999 4666664 4457889999997732  2333333  3444443211  


Q ss_pred             -----CCCCccee----------------------------hhhhh----------------hcCCCCCCHHHHHhhcCC
Q 040384          172 -----SQLPGTQF----------------------------VHSSL----------------FNTTPPIPNEVLTKTFLV  202 (224)
Q Consensus       172 -----s~~pg~~~----------------------------~~~~l----------------f~~~p~~p~evla~af~v  202 (224)
                           ..+|....                            ++..+                +.-  .++.+-||...|+
T Consensus       102 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~--~~t~~~lA~~lg~  179 (220)
T 2fmy_A          102 FQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLEL--GLNTEEIALMLGT  179 (220)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEEC--SSCHHHHHHHHTS
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEec--cCCHHHHHHHhCC
Confidence                 13443310                            00000                111  3899999999999


Q ss_pred             CHHHHHHHHhccCCCcceec
Q 040384          203 GDEVINAIKAAITSAQLGHR  222 (224)
Q Consensus       203 ~~~~v~~l~~~~~~~~~i~r  222 (224)
                      +.+++.++.+.+.+.++|.+
T Consensus       180 sr~tvsR~l~~l~~~g~I~~  199 (220)
T 2fmy_A          180 TRQTVSVLLNDFKKMGILER  199 (220)
T ss_dssp             CHHHHHHHHHHHHHTTSEEE
T ss_pred             cHHHHHHHHHHHHHCCCEEE
Confidence            99999999999988888865

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=85.51  E-value=5  Score=33.87  Aligned_cols=71  Identities=15%  Similarity=0.038  Sum_probs=47.1

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      ..+.+..+.|++|+........+. -++||++|+++++  +.++  ....|.+||.+++-.+..-.+..  .+++.++
T Consensus       180 ~~~~~~~~~L~~g~~~~~~~~~~~-~~l~v~~G~v~v~--g~~~--~~~~l~~gd~~~l~~~~~l~l~a--~~~a~~L  250 (256)
T 2vec_A          180 QQVWLHHIVLDKGESANFQLHGPR-AYLQSIHGKFHAL--THHE--EKAALTCGDGAFIRDEANITLVA--DSPLRAL  250 (256)
T ss_dssp             SSCEEEEEEECTTCEEEEECSSSE-EEEEEEESCEEEE--ETTE--EEEEECTTCEEEEESCSEEEEEE--SSSEEEE
T ss_pred             CCcEEEEEEECCCCEEEEecCCCe-EEEEEEECEEEEC--Cccc--cceEECCCCEEEECCCCeEEEEe--CCCCEEE
Confidence            367788889999987654444334 6889999998875  2111  23579999999997665433433  2345444

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=85.25  E-value=5  Score=34.21  Aligned_cols=56  Identities=13%  Similarity=0.117  Sum_probs=42.0

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC-C
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR-G  151 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~-G  151 (224)
                      ...+.+..+.|++|+.......+...-++||++|+++++     +.  ...+++||.+++.. |
T Consensus       164 ~~~~~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v~-----g~--~~~l~~~d~~~~~~~~  220 (277)
T 2p17_A          164 IVPVTMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVFG-----AD--NIEGKAGQALFFSRHN  220 (277)
T ss_dssp             SSCEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEET-----TT--TEEEETTEEEEECCCC
T ss_pred             CCCCEEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEEC-----CC--ceEeCCCcEEEEcCCC
Confidence            347889999999999775444444457899999998763     31  14699999999985 6

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=83.54  E-value=5.8  Score=34.17  Aligned_cols=57  Identities=12%  Similarity=0.104  Sum_probs=40.9

Q ss_pred             cEEEEEEEEeCCcccCceecCCCC-ceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSS-ESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL  157 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~  157 (224)
                      -+++.++++.....   +.. ++. .++.|++| +++..   +++  ...+++||.+++|++.-.+..
T Consensus       229 ~F~v~~~~~~~~~~---~~~-~~~~~il~v~~G-~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i  286 (300)
T 1zx5_A          229 NFGLEVVDVTGTAE---IKT-GGVMNILYAAEG-YFILR---GKE--TADLHRGYSCLVPASTDSFTV  286 (300)
T ss_dssp             SEEEEEEEEEEEEE---EEC-CSBCEEEEEEES-CEEEE---SSS--EEEECTTCEEEECTTCCEEEE
T ss_pred             eEEEEEEEECCceE---Eec-CCceEEEEEccc-EEEEe---CCe--EEEEccceEEEEeCCCceEEE
Confidence            47888888874222   233 566 89999999 88764   343  468999999999998755543

>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16

Probab=81.47  E-value=17  Score=28.36  Aligned_cols=88  Identities=13%  Similarity=0.068  Sum_probs=61.7

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecC--CCCceEEEEeCe-EEEEEEeCCCeEEEEEE----CC
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHP--RSSESSIVIRGT-VLVGIITTDNVFYSKVV----TA  142 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp--~a~Ei~yVl~G~-~~v~~v~~~~~~~~~~l----~~  142 (224)
                      .+.||..++.......+-+. -.+....-|.+|...  |||.  ++.|+.+-..|. +++.+..++++..+.+|    .+
T Consensus        19 HPEGG~yrEt~Rs~~~~~R~-~~TaIYfLL~~g~~S--~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~~~~~LG~d~~~   95 (154)
T 1znp_A           19 HPEGGFYHQTFRDKAGGERG-HSTAIYYLLEKGVRS--HWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILE   95 (154)
T ss_dssp             CTTSSEEEEEEECSSSTTTC-SCEEEEEEEESSCCE--EEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTT
T ss_pred             CCCCccEEEEEeCCCCCCCc-ceeEEEEEecCCCCC--cceeccCCCEEEEeECCCCEEEEEEcCCCcEEEEEeCCCccc
Confidence            56899999888765433332 245555567777654  5653  589999999987 78888887776555655    45


Q ss_pred             CCE--EEecCCCeeEEEecC
Q 040384          143 GML--FLIPRGLVHFQLNVG  160 (224)
Q Consensus       143 GDv--~vvP~G~~H~~~N~G  160 (224)
                      |+.  ++||+|........|
T Consensus        96 Ge~pQ~vVP~G~WqaA~~~g  115 (154)
T 1znp_A           96 GERPQVIVPANCWQSAESLG  115 (154)
T ss_dssp             TEESEEEECTTCEEEEEESS
T ss_pred             CcccEEEEcCCEEEEeeECC
Confidence            764  899999988776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	4e-64
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	2e-31
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	3e-20
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	9e-30
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	1e-29
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	2e-29
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	1e-25
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	7e-22
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	1e-16
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	5e-15
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	3e-13
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	3e-11
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	7e-07
d1o4ta_	115	b.82.1.9 (A:) Hypothetical protein TM1287 {Thermot	7e-06
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	9e-06
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	0.002
d1v70a_	105	b.82.1.9 (A:) Hypothetical protein TTHA0104 {Therm	1e-05
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	3e-05
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	7e-05
d1lr5a_	160	b.82.1.2 (A:) Auxin binding protein {Maize (Zea ma	5e-04
d1x82a_	190	b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {	7e-04

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  195 bits (498), Expect = 4e-64
 Identities = 103/194 (53%), Positives = 128/194 (65%), Gaps = 5/194 (2%)

Query: 24  DPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFFD-LSEEGNLSNAFGRAVTEGNV 81
           DPDPLQD C+ADLD K +SVNG  CKP +E   D  F   L++ GN S   G AVTE +V
Sbjct: 2   DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61

Query: 82  HEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIIT---TDNVFYSK 138
            E+PG NT G+S NRVD A GG NPPH+HPR++E  +V++G +LVGI+    + N  YS+
Sbjct: 62  AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121

Query: 139 VVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTK 198
           VV AG  F+IPRGL+HFQ NVGK       SFNSQ PG  FV  +LF + PPIP  VLTK
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181

Query: 199 TFLVGDEVINAIKA 212
              V   V+  +K+
Sbjct: 182 ALRVEAGVVELLKS 195

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score =  116 bits (291), Expect = 2e-31
 Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 7/157 (4%)

Query: 55  SDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSS 114
              F + L E+  + +  G+ V   +   F    T  I++  V +  G +   H HP + 
Sbjct: 216 PYPFTYRLLEQEPIESEGGK-VYIADSTNFKVSKT--IASALVTVEPGAMRELHWHPNTH 272

Query: 115 ESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQL 174
           E    I G   + +  +D    +    AG +  +P  + H+  N+G E ++F   F    
Sbjct: 273 EWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDH 332

Query: 175 PGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIK 211
                ++  L       P   +     +G +  + + 
Sbjct: 333 YADVSLNQWLAML----PETFVQAHLDLGKDFTDVLS 365

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 85.5 bits (211), Expect = 3e-20
 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 60  FDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIV 119
           F  S+  N     G A  E  V E P    + +++  + L  G I   H H  + E + +
Sbjct: 43  FSFSDTHNRLEKGGYA-REVTVRELPIS--ENLASVNMRLKPGAIRELHWHKEA-EWAYM 98

Query: 120 IRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQF 179
           I G+  V I+      +   V  G L+  P GL H    +  E   F   F+        
Sbjct: 99  IYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDGSFSE-N 156

Query: 180 VHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKA 212
               L +     P EV+   F V  E I+ +  
Sbjct: 157 STFQLTDWLAHTPKEVIAANFGVTKEEISNLPG 189

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score =  107 bits (267), Expect = 1e-29
 Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 17/176 (9%)

Query: 53  VTSDDFFFDL-SEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHP 111
           ++S+D  F+L S +   SN  G+ + E    + P +    +  + VD+  G +  PH + 
Sbjct: 3   ISSEDKPFNLRSRDPIYSNKLGK-LFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNS 61

Query: 112 RSSESSIVIRGTVLVGIITT--------------DNVFYSKVVTAGMLFLIPRGLVHFQL 157
           ++    ++  G   + ++                +   Y   ++   +F+IP G      
Sbjct: 62  KAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVN 121

Query: 158 NVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAA 213
                N   F   N++     F+  S  N    IP++V    F    + I  +  +
Sbjct: 122 ATSDLNFFAF-GINAENNQRNFLAGSKDNVISQIPSQVQELAFPGSAKDIENLIKS 176

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score =  105 bits (264), Expect = 2e-29
 Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 5/153 (3%)

Query: 61  DLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVI 120
             +   ++ N    +VT     +FP ++   +S     L    +  PH +  ++     +
Sbjct: 11  GQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYAL 70

Query: 121 RGTVLVGIITTD-NVFYSKVVTAGMLFLIPRGLVHFQLNVGKE-NVLFFPSFNSQLPGTQ 178
            G  L+ ++  +    +   +  G + ++P+  V    +       + F + ++ + GT 
Sbjct: 71  NGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTL 130

Query: 179 FVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIK 211
              +SL N  P    EV+  TF +  +    IK
Sbjct: 131 AGANSLLNALPE---EVIQHTFNLKSQQARQIK 160

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 96.2 bits (239), Expect = 1e-25
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 6/152 (3%)

Query: 61  DLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVI 120
                 +  N     ++  N    P +   G+S   V L   GI  PH +  ++    V 
Sbjct: 16  ARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVT 75

Query: 121 RGTVLVGIITTD-NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQF 179
           RG   V ++    N  +   +  G L ++P+  V  +        L +  F +       
Sbjct: 76  RGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGE--QGLEYVVFKTHHNAVSS 133

Query: 180 VHSSLFNTTPPIPNEVLTKTFLVGDEVINAIK 211
               +F   P    EVL+ ++ +G   +  +K
Sbjct: 134 YIKDVFRAIPS---EVLSNSYNLGQSQVRQLK 162

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 86.1 bits (213), Expect = 7e-22
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 21/158 (13%)

Query: 79  GNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII-------TT 131
           GN+ E    N+  +  + +++  G +  PH + ++    +V  G   V ++       T 
Sbjct: 8   GNLTE-RTDNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETL 66

Query: 132 DNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP-----SFNSQLPG-TQFVHSSLF 185
           +   Y   ++   +F+IP             N   F      +  + L G T  V SS+ 
Sbjct: 67  EYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIG 126

Query: 186 NTTPPIPNEVLTKTFLVGDEVINAIKAA-----ITSAQ 218
                   +VL  TF    + +  +           A 
Sbjct: 127 R--ALDGKDVLGLTFSGSGDEVMKLINKQSGSYFVDAH 162

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 72.2 bits (177), Expect = 1e-16
 Identities = 26/167 (15%), Positives = 50/167 (29%), Gaps = 17/167 (10%)

Query: 58  FFFDLSE--EGNLSNAFGRAVT----EGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHP 111
           F+F  S   +    N  GR            +   +  +     +       I  PH H 
Sbjct: 6   FYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENL--RDYRIVQFQSKPNTILLPH-HA 62

Query: 112 RSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN--VLFFPS 169
            +     V+ G  ++ ++  D+   S  +  G    IP G  ++ +N        + + +
Sbjct: 63  DADFLLFVLSGRAILTLVNNDDR-DSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLA 121

Query: 170 FNSQLPGTQFVHSSLFNTTPP-----IPNEVLTKTFLVGDEVINAIK 211
                PG                     + +L  +F    E IN + 
Sbjct: 122 IPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVL 168

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 68.1 bits (166), Expect = 5e-15
 Identities = 25/164 (15%), Positives = 43/164 (26%), Gaps = 12/164 (7%)

Query: 58  FFFDL-SEEGNLSNAFG--RAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSS 114
           + F          N  G  R +   N       N +             +  PH H  S 
Sbjct: 4   YLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSD 62

Query: 115 ESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF--NS 172
              +V+ G  ++ ++  D    +  +  G    I  G   + +N      L    F    
Sbjct: 63  LLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITF 121

Query: 173 QLPGTQFVHSSLFNTTPP-----IPNEVLTKTFLVGDEVINAIK 211
           + PGT            P          L  ++    + I    
Sbjct: 122 RRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTL 165

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 63.8 bits (155), Expect = 3e-13
 Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 18/180 (10%)

Query: 58  FFFDL-SEEGNLSNAFG--RAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSS 114
           F F+    +    N +G  R +   N       N +       +     +  PH H  + 
Sbjct: 3   FHFNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPH-HADAD 61

Query: 115 ESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF------- 167
              +++ GT ++ ++  D+   S  + +G    +P G  ++ +N   +  L         
Sbjct: 62  YLIVILNGTAILTLVNNDD-RDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPV 120

Query: 168 ---PSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRPK 224
                F S    +     S           +L  ++    E IN +       Q     +
Sbjct: 121 NKPGRFESFFLSSTQAQQSYLQG---FSKNILEASYDTKFEEINKVLFGREEGQQQGEER 177

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 58.4 bits (141), Expect = 3e-11
 Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 18/148 (12%)

Query: 88  NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIIT-----TDNVFYSKVVTA 142
           N +             +  P     +    +V  G+ ++ ++            S     
Sbjct: 38  NLEDYRLVEFRSKPETLLLPQ-QADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIF 96

Query: 143 GMLFLIPRGLVHFQLNVGKEN----VLFFPSFNSQLPGTQFV-----HSSLFNTTPPIPN 193
                IP G + + +N   +     +      N+      F+       S          
Sbjct: 97  SDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSK--- 153

Query: 194 EVLTKTFLVGDEVINAIKAAITSAQLGH 221
            +L  +F    E IN +       Q G 
Sbjct: 154 HILEASFNSKFEEINRVLFEEEGQQEGV 181

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (110), Expect = 7e-07
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 10/116 (8%)

Query: 89  TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLI 148
           T  +      +  G + P H H   S    ++ G      +  +       +  G   L 
Sbjct: 51  TATLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAVDGERT----PMNEGDFILT 105

Query: 149 PRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGD 204
           P+   H   N G E V++    +  LP    +           P E    T   GD
Sbjct: 106 PQWRWHDHGNPGDEPVIWLDGLD--LPLVNILGCGFA---EDYPEEQQPVTRKEGD 156

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Length = 115

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.6 bits (97), Expect = 7e-06
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 5/81 (6%)

Query: 87  VNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLF 146
           ++ +     R+ L  G     H H    E   ++ G  +      D    +       + 
Sbjct: 34  MHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKDVPIKAG-----DVC 88

Query: 147 LIPRGLVHFQLNVGKENVLFF 167
               G  H   N G  ++ F 
Sbjct: 89  FTDSGESHSIENTGNTDLEFL 109

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 43.3 bits (101), Expect = 9e-06
 Identities = 10/61 (16%), Positives = 27/61 (44%)

Query: 106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVL 165
            PH+H +  E+    +G+  +   + +    ++V+++G    +PR + H       +  +
Sbjct: 62  LPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEM 121

Query: 166 F 166
            
Sbjct: 122 T 122

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 92  ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRG 151
           +ST  +      +  P      + +  V  G V+V I           + +G +  IP G
Sbjct: 249 LSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAAT----ELGSGDVAFIPGG 304

Query: 152 LVHFQLNVGKE 162
           +     +    
Sbjct: 305 VEFKYYSEAYF 315

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Length = 105

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 78  EGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYS 137
              + + P   ++ +  +   L  G     H+H  S +    + G V+V +   + +   
Sbjct: 14  PEKMAKIPVFQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAP 73

Query: 138 KVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167
                 M    P G  H   N      L  
Sbjct: 74  G-----MAAFAPAGAPHGVRNESASPALLL 98

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 5/76 (6%)

Query: 92  ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRG 151
                 +   G     H H   +E+   + G + +             +  G    +P  
Sbjct: 214 FIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT--DGQEI---QLNPGDFLHVPAN 268

Query: 152 LVHFQLNVGKENVLFF 167
            VH          +  
Sbjct: 269 TVHSYRLDSHYTKMVG 284

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.7 bits (94), Expect = 7e-05
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 15/87 (17%)

Query: 78  EGNVHEFPGVN----------TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVG 127
           EG  + F                      +    G   P H+H  + E  +V+ G + + 
Sbjct: 18  EGERYLFGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELT 77

Query: 128 IITTDNVFYSKVVTAGMLFLIPRGLVH 154
           +      +   ++ +G    IP G  H
Sbjct: 78  L--DGERY---LLISGDYANIPAGTPH 99

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Length = 160

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 5/114 (4%)

Query: 81  VHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSK-- 138
           V        + +      ++ G   P H      E   V++G   + + ++   +  +  
Sbjct: 30  VAGALNHGMKEVEVWLQTISPGQRTPIH-RHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ 88

Query: 139 --VVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPP 190
                    F IP    H   N  +   L      S+ P   F++         
Sbjct: 89  EIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTA 142

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 190

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 11/65 (16%), Positives = 26/65 (40%)

Query: 108 HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF 167
           H     +E  + ++G   + + T +       +  G +  +P    H  +N+G E  +F 
Sbjct: 91  HAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFL 150

Query: 168 PSFNS 172
             + +
Sbjct: 151 AIYPA 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	100.0
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	100.0
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.96
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.96
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.96
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.94
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.94
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.93
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.93
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.93
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.92
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.6
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.53
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.53
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.46
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.46
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.43
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	99.31
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.29
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.21
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.18
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.16
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.13
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.13
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.12
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.1
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.08
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.07
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.05
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.05
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.04
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.99
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.98
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.94
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.92
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.88
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.8
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.76
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.74
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.71
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.55
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.51
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	98.21
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	98.12
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	97.76
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.6
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	97.46
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	97.19
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	97.17
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	97.14
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	97.12
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	97.07
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.0
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	97.0
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	96.96
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.91
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	96.9
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	96.87
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	96.46
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	96.38
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	95.66
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	95.44
d1yuda1	158	Hypothetical protein SO0799 {Shewanella oneidensis	94.44
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	94.07
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	93.63
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	92.74
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	92.23
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	90.71
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	89.95
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	89.93
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	89.64
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	89.09
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	89.03
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	87.96
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	87.58
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	86.38
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	84.36
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	83.19

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=2.7e-61  Score=403.03  Aligned_cols=195  Identities=53%  Similarity=0.898  Sum_probs=187.3

Q ss_pred             cCCCCCcceeecCCCCC-ccccCCCCCCCCCccCCCeee-eccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEe
Q 040384           23 ADPDPLQDICIADLDAK-ISVNGFPCKPETEVTSDDFFF-DLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLA  100 (224)
Q Consensus        23 ~d~~~~~d~cva~~~~~-~~~~g~~ck~~~~vt~~df~f-~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~  100 (224)
                      +||||||||||||+.++ +++||||||+++.++.+||+| +|.++++++++.|++++.+++.+||+|+++|+|++|++|+
T Consensus         1 sdp~~lqdfcvad~~~~~~~~~g~~ck~~~~~~~~~f~~~~l~~~~~~~~~~g~~vt~~~~~~fP~Ln~lglS~~rv~l~   80 (201)
T d2et1a1           1 TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFA   80 (201)
T ss_dssp             CCCCCSSSCCCBCCCTTSCCCSSCCBCCGGGCCSCTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEEC
T ss_pred             CCCcccceeEeecCCCCccccCCcccCChhhccccceeecccccCCCccCCCCcEEEEeehhcCccccccceeEEEEEEC
Confidence            69999999999999764 799999999999999999999 8999999999999999999999999999999999999999


Q ss_pred             CCcccCceecCCCCceEEEEeCeEEEEEEeC---CCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcc
Q 040384          101 VGGINPPHLHPRSSESSIVIRGTVLVGIITT---DNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGT  177 (224)
Q Consensus       101 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~---~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~  177 (224)
                      |||+++|||||+|+|++||++|+++++++++   ++++++++|++||+++||+|++||++|.|++++.++++|++++|+.
T Consensus        81 pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s~~pg~  160 (201)
T d2et1a1          81 PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI  160 (201)
T ss_dssp             TTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCC
T ss_pred             CCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEecCCCCcc
Confidence            9999999999999999999999999999864   5788999999999999999999999999999999999999999999


Q ss_pred             eehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCC
Q 040384          178 QFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSA  217 (224)
Q Consensus       178 ~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~  217 (224)
                      +.++.++|+++|+||+|||+++|++|+++++|||++|.+.
T Consensus       161 ~~~~~~~f~~~~~~p~eVLa~af~i~~~~v~kLks~f~g~  200 (201)
T d2et1a1         161 VFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGG  200 (201)
T ss_dssp             EEHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHTTTTC
T ss_pred             eehhhhhhccCCCCCHHHHHHHhCCCHHHHHHHHhhccCC
Confidence            9999999999889999999999999999999999998764

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=4.2e-37  Score=250.73  Aligned_cols=154  Identities=18%  Similarity=0.295  Sum_probs=139.2

Q ss_pred             CcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEEEEEECCCC
Q 040384           66 GNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFYSKVVTAGM  144 (224)
Q Consensus        66 ~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~~~~l~~GD  144 (224)
                      ++..++.||+++.+++.+||+|+++|+|+++++|+|||+++|||||+|+||.||++|+++++++++++ +.++++|++||
T Consensus        16 ~d~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gd   95 (174)
T d1fxza2          16 PDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGR   95 (174)
T ss_dssp             CSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTC
T ss_pred             CCcCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCc
Confidence            45568899999999999999999999999999999999999999999999999999999999999875 77889999999


Q ss_pred             EEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceec
Q 040384          145 LFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHR  222 (224)
Q Consensus       145 v~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r  222 (224)
                      +++||+|++||+.|.+ +...+++++.++++....++  .++|++   +|+|||+++|+++.|++++||+.+++. +|+.
T Consensus        96 v~vvP~G~~h~~~n~~-~~~~~v~~~~~~~~~~~~lag~~s~l~~---~~~~vl~~af~v~~eei~~lk~~q~~~-~~~~  170 (174)
T d1fxza2          96 VLIVPQNFVVAARSQS-DNFEYVSFKTNDTPMIGTLAGANSLLNA---LPEEVIQHTFNLKSQQARQIKNNNPFK-FLVP  170 (174)
T ss_dssp             EEEECTTCEEEEEECS-TTEEEEEEESSSSCCEEESSSTTCTGGG---SCHHHHHHHHTCCHHHHHHHHHSCCCS-SEEC
T ss_pred             EEEECCCCEEEEEeCC-CCeEEEEEEccCCCCcccccchhhhhhc---CCHHHHHHHHCcCHHHHHHHHhcCCce-EeCC
Confidence            9999999999999965 56788888888888877765  567886   999999999999999999999998655 6766


Q ss_pred             CC
Q 040384          223 PK  224 (224)
Q Consensus       223 ~~  224 (224)
                      |+
T Consensus       171 P~  172 (174)
T d1fxza2         171 PQ  172 (174)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=7.6e-37  Score=249.02  Aligned_cols=151  Identities=19%  Similarity=0.338  Sum_probs=135.5

Q ss_pred             CcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-eEEEEEECCCC
Q 040384           66 GNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-VFYSKVVTAGM  144 (224)
Q Consensus        66 ~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-~~~~~~l~~GD  144 (224)
                      ++..|+.||+++.+++.+||+|+++|+|+++++|.|||+++||||++|+|++||++|+++++++++++ +.++.+|++||
T Consensus        21 ~d~~n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gd  100 (173)
T d1od5a2          21 ADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQ  100 (173)
T ss_dssp             CSEEETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTC
T ss_pred             CCccCCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCc
Confidence            44568899999999999999999999999999999999999999999999999999999999999875 67788999999


Q ss_pred             EEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCccee
Q 040384          145 LFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGH  221 (224)
Q Consensus       145 v~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~  221 (224)
                      +++||+|++||+.|. ++.+.+++++++.++....+. ++|++   +|+|||+++|+++.+++++||+++++..||.
T Consensus       101 v~~iP~G~~h~~~n~-~~~~~~v~~~~~~~~~~~~~~-s~l~~---~p~evl~~af~v~~e~v~~lk~~~~~~~i~~  172 (173)
T d1od5a2         101 LLVVPQNFVVAEQGG-EQGLEYVVFKTHHNAVSSYIK-DVFRA---IPSEVLSNSYNLGQSQVRQLKYQGNSGPLVN  172 (173)
T ss_dssp             EEEECTTCEEEEEEE-EEEEEEEEEESSTTCCEEEHH-HHHHH---SCHHHHHHHHTCCHHHHHHHHHSSCSSSEEC
T ss_pred             EEEECCCCEEEEEcC-CCceEEEEeecCCchhhhhHH-HHHHh---CCHHHHHHHhCcCHHHHHHHHhcCCCCcccC
Confidence            999999999999874 567888888887777777765 55676   9999999999999999999999987765554

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=2.5e-35  Score=242.25  Aligned_cols=165  Identities=16%  Similarity=0.215  Sum_probs=137.6

Q ss_pred             CCccCCCeeeec-cCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEE
Q 040384           51 TEVTSDDFFFDL-SEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII  129 (224)
Q Consensus        51 ~~vt~~df~f~l-~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v  129 (224)
                      ++.+++|+.|+| ++.+.++| .+|+++++++.++|.|+++|+++++++|+|||+.+||||++|+|++||++|+++++++
T Consensus         1 ~~~~~~~~pfnl~~~~p~~~n-~~G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v   79 (185)
T d1uika2           1 KTISSEDKPFNLRSRDPIYSN-KLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELV   79 (185)
T ss_dssp             GGGGCSSSCEETTSSCCSEES-SSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEE
T ss_pred             CccccCCCccccccCCCceeC-CCCeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEE
Confidence            357889999954 44555555 4578999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCC--------------eEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehh--hhhhcCCCCCCH
Q 040384          130 TTDN--------------VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVH--SSLFNTTPPIPN  193 (224)
Q Consensus       130 ~~~~--------------~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~~p~  193 (224)
                      ++++              +.+.++|++||+++||+|++||++|.++.+.+++.+.+..+...+..+  .++|++   ||+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d~~~v~~~~~~~~~~~~f~ag~~~~vl~~---~~~  156 (185)
T d1uika2          80 GIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGINAENNQRNFLAGSKDNVISQ---IPS  156 (185)
T ss_dssp             EC------------CBCCEEEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEETCTTCCEEESSSSSSBGGGG---SCH
T ss_pred             ccCccchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCCccEEEEEEcCCCCccccccccccccccc---CCH
Confidence            8764              467889999999999999999999998866555544444444433332  468886   999


Q ss_pred             HHHHhhcCCCHHHHHHHHhccCCCcc
Q 040384          194 EVLTKTFLVGDEVINAIKAAITSAQL  219 (224)
Q Consensus       194 evla~af~v~~~~v~~l~~~~~~~~~  219 (224)
                      |+|++||+++.++++||++.++++-|
T Consensus       157 evLa~aF~v~~~~~~kl~~~q~e~~i  182 (185)
T d1uika2         157 QVQELAFPGSAKDIENLIKSQSESYF  182 (185)
T ss_dssp             HHHHHHSSSCHHHHHHHHHHCCSCSE
T ss_pred             HHHHHHhCCCHHHHHHHHhcCCceEE
Confidence            99999999999999999999887743

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.96  E-value=1.9e-29  Score=202.93  Aligned_cols=143  Identities=17%  Similarity=0.174  Sum_probs=116.6

Q ss_pred             cCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC-------eEEEEEEC
Q 040384           69 SNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN-------VFYSKVVT  141 (224)
Q Consensus        69 ~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-------~~~~~~l~  141 (224)
                      +|.+| .+++++      ++++++++++++|+||++..||||++|+|++||++|+++++++++++       +.+..+|+
T Consensus         4 ~n~fg-~~~~~~------~n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~   76 (162)
T d2phla2           4 GNEFG-NLTERT------DNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELS   76 (162)
T ss_dssp             EETTE-EEEEEE------ETTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEE
T ss_pred             ccccC-ceeecC------CCCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeec
Confidence            46676 577777      47789999999999999999999999999999999999999998875       36788999


Q ss_pred             CCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcce------ehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccC
Q 040384          142 AGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQ------FVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAIT  215 (224)
Q Consensus       142 ~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~------~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~  215 (224)
                      +||+++||+|++||+.|.++++.+.+.+.+..+...+      .+.++++.+  ++|+|||+++|+++.++++||+++++
T Consensus        77 ~Gdv~vvP~G~~~~~~n~~~~~~v~~~~~~~~~~~~flaG~~~sv~~~~~~~--~~~~evL~~aF~v~~eevekl~~~q~  154 (162)
T d2phla2          77 KDDVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIGRA--LDGKDVLGLTFSGSGDEVMKLINKQS  154 (162)
T ss_dssp             TTCEEEECTTCCEEEEESSSEEEEEEEESCTTCCEEESSSSSSBHHHHHHTS--TTHHHHHHHHSSSCHHHHHHHHTTCC
T ss_pred             CCcEEEECCCCEEEEEeCCCceEEEEEecCCCCcceeecCccccchhhhccc--CCCHHHHHHHhCCCHHHHHHHHhhCC
Confidence            9999999999999999998766555444433333222      222344443  49999999999999999999999999


Q ss_pred             CCcce
Q 040384          216 SAQLG  220 (224)
Q Consensus       216 ~~~~i  220 (224)
                      ++-|+
T Consensus       155 e~~~v  159 (162)
T d2phla2         155 GSYFV  159 (162)
T ss_dssp             CCSEE
T ss_pred             ceEEE
Confidence            88554

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=3.2e-29  Score=225.32  Aligned_cols=156  Identities=18%  Similarity=0.283  Sum_probs=139.9

Q ss_pred             CCccCCCeeeeccCCCcccCCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEe
Q 040384           51 TEVTSDDFFFDLSEEGNLSNAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIIT  130 (224)
Q Consensus        51 ~~vt~~df~f~l~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~  130 (224)
                      ....+..|.|.+....+. ...||+++++++.+||.++  ++++++++|+||++.+|||||+++|+.||++|++++++++
T Consensus       212 ~g~~~~~~~~~l~~q~P~-~~~gG~~~~~d~~~fp~~~--~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~  288 (372)
T d1j58a_         212 NGEVPYPFTYRLLEQEPI-ESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFA  288 (372)
T ss_dssp             TCCCSSCSEEEGGGSCCE-ECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEE
T ss_pred             CCCCCCcceeeccccCCc-ccCCccEEEeccccCCccC--ceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEc
Confidence            334456678854443345 4567889999999999999  6799999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHH
Q 040384          131 TDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAI  210 (224)
Q Consensus       131 ~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l  210 (224)
                      ++++.++.++++||+++||+|..|+++|.|++++.++.+|++..++.+.+++++..    +|.+|++++|+++++++++|
T Consensus       289 ~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~vf~s~~~~~i~~~~~l~~----~P~~vv~~~~~~~~e~~~~l  364 (372)
T d1j58a_         289 SDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAM----LPETFVQAHLDLGKDFTDVL  364 (372)
T ss_dssp             ETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEHHHHHHT----SCHHHHHHHHTCCHHHHTTC
T ss_pred             CCCceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEEECCCCcceeeHHHHhhh----CCHHHHHHHhCcCHHHHHHH
Confidence            88988899999999999999999999999999999999999999999999999854    89999999999999999999


Q ss_pred             Hhc
Q 040384          211 KAA  213 (224)
Q Consensus       211 ~~~  213 (224)
                      |+.
T Consensus       365 ~~~  367 (372)
T d1j58a_         365 SKE  367 (372)
T ss_dssp             CSS
T ss_pred             Hhc
Confidence            864

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.96  E-value=1.2e-28  Score=200.96  Aligned_cols=162  Identities=12%  Similarity=0.101  Sum_probs=127.5

Q ss_pred             CeeeeccCCCcccCCCCceEEEe--ecccCCCCccc-cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC
Q 040384           57 DFFFDLSEEGNLSNAFGRAVTEG--NVHEFPGVNTQ-GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN  133 (224)
Q Consensus        57 df~f~l~~~~~~~~~~g~~~~~~--~~~~~P~l~~~-gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~  133 (224)
                      .|+|............+|+++.+  +.++.+.|+++ .+++.+++++||++.+||| ++|+|++||++|+++++++++++
T Consensus         3 py~F~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~a~ev~yV~~G~g~v~~v~~~~   81 (178)
T d1dgwa_           3 PYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SDSDLLVLVLEGQAILVLVNPDG   81 (178)
T ss_dssp             TTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEE-ESSEEEEEEEESEEEEEEEETTE
T ss_pred             CeeccccccccceECCCCcEEEecccCCcchhccCccceEEEEEEecCCccccccc-CCCCEEEEEEEeEEEEEEecCCc
Confidence            45664433222234566767655  46677788887 4999999999999999994 69999999999999999999754


Q ss_pred             eEEEEEECCCCEEEecCCCeeEEEecCC-ccEEEEEEeeCC-CCcc---eeh-----hhhhhcCCCCCCHHHHHhhcCCC
Q 040384          134 VFYSKVVTAGMLFLIPRGLVHFQLNVGK-ENVLFFPSFNSQ-LPGT---QFV-----HSSLFNTTPPIPNEVLTKTFLVG  203 (224)
Q Consensus       134 ~~~~~~l~~GDv~vvP~G~~H~~~N~G~-~~a~~~~~~~s~-~pg~---~~~-----~~~lf~~~p~~p~evla~af~v~  203 (224)
                      + .+++|++||++++|+|.+||++|.|+ +++.++++++.. +++.   +..     ..++|++   +|+|||++||+++
T Consensus        82 ~-~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~~f~~~~~~~~~svl~~---~~~evL~~aF~v~  157 (178)
T d1dgwa_          82 R-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSA---FSKNFLEASYDSP  157 (178)
T ss_dssp             E-EEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGG---SCHHHHHHHHTSC
T ss_pred             e-EEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccccccccccCcccHHHh---CCHHHHHHHhCCC
Confidence            4 78999999999999999999999875 566666665432 2222   222     2467886   9999999999999


Q ss_pred             HHHHHHHHhccCCCcceecC
Q 040384          204 DEVINAIKAAITSAQLGHRP  223 (224)
Q Consensus       204 ~~~v~~l~~~~~~~~~i~r~  223 (224)
                      .++++|++..+.+++.|+|.
T Consensus       158 ~e~~~kl~~~~~~~g~Iv~~  177 (178)
T d1dgwa_         158 YDEIEQTLLQEEQEGVIVKM  177 (178)
T ss_dssp             HHHHHHHTTSCCSSSSEEEC
T ss_pred             HHHHHHHHhcccCCCcEEeC
Confidence            99999999888888888874

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.94  E-value=1.5e-26  Score=196.62  Aligned_cols=148  Identities=16%  Similarity=0.288  Sum_probs=128.6

Q ss_pred             CCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCe----------------
Q 040384           71 AFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNV----------------  134 (224)
Q Consensus        71 ~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~----------------  134 (224)
                      ..|| +++.+..+.|.|+++|+++.|.+|.|+|+..|||+ +|+.++||++|+++++++.+++.                
T Consensus        19 sE~G-~~E~wd~~~~qlqcagV~~~r~~I~p~gL~lP~ys-~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~   96 (245)
T d1od5a1          19 SEGG-LIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYS-PYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSR   96 (245)
T ss_dssp             ETTE-EEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECEEEEEECCTTCCCCEEECC---------
T ss_pred             ccCC-eEEeCCCCCHHHhhcCceeEEEEEcCCcccccccc-CCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccc
Confidence            3456 78888899999999999999999999999999996 89999999999999999987531                


Q ss_pred             ---------EEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCC--------Ccceehhh---------------
Q 040384          135 ---------FYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQL--------PGTQFVHS---------------  182 (224)
Q Consensus       135 ---------~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~--------pg~~~~~~---------------  182 (224)
                               .....|++|||+++|+|++||++|+|+++++++++++..|        +..+.++.               
T Consensus        97 ~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~~~~~~~~~~~q~~  176 (245)
T d1od5a1          97 SQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQ  176 (245)
T ss_dssp             ------EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCTTTTC----
T ss_pred             cccccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCcccccchhcccchh
Confidence                     1135799999999999999999999999999999887554        33344442               


Q ss_pred             --------------------hhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccCCCcceecC
Q 040384          183 --------------------SLFNTTPPIPNEVLTKTFLVGDEVINAIKAAITSAQLGHRP  223 (224)
Q Consensus       183 --------------------~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~~~~~i~r~  223 (224)
                                          ++|++   |+.++||+||+++.++++||+...+.++.|||-
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~nif~g---F~~~~La~Af~v~~e~~~klq~~~~~rG~IVrv  234 (245)
T d1od5a1         177 QKSHGGRKQGQHQQQEEEGGSVLSG---FSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTV  234 (245)
T ss_dssp             -----------------CCCCTTTT---SCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEEC
T ss_pred             hhhcccccccccccccccCCCeeec---CCHHHHHHHHCCCHHHHHHHhCcccCCCcEEEE
Confidence                                79997   999999999999999999999888888999874

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.94  E-value=2.5e-26  Score=185.84  Aligned_cols=137  Identities=17%  Similarity=0.191  Sum_probs=112.0

Q ss_pred             CCCCceEEEee--cccCCCCcccc-EEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEE
Q 040384           70 NAFGRAVTEGN--VHEFPGVNTQG-ISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLF  146 (224)
Q Consensus        70 ~~~g~~~~~~~--~~~~P~l~~~g-is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~  146 (224)
                      ...+|+++.+.  ..+.|.|++++ +++.++++.||++.+||| ++|+|++||++|++++++++++++ .++++++||++
T Consensus        19 ~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~-~~a~ei~yV~~G~g~v~~v~~~~~-~~~~l~~GDv~   96 (170)
T d1uija1          19 ENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHH-ADADFLLFVLSGRAILTLVNNDDR-DSYNLHPGDAQ   96 (170)
T ss_dssp             ECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEE-ESEEEEEEEEESCEEEEEECSSCE-EEEEECTTEEE
T ss_pred             ccCCCcEEEEecccccchhhcchhheEEEEEEecCCccccccc-CCCCEEEEEEEEEEEEEEEeCCCc-EEEEecCCcEE
Confidence            34567776664  57788899985 999999999999999995 599999999999999999998665 58899999999


Q ss_pred             EecCCCeeEEEecCCccEEEEEEe--eCCCCcce---ehh-----hhhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 040384          147 LIPRGLVHFQLNVGKENVLFFPSF--NSQLPGTQ---FVH-----SSLFNTTPPIPNEVLTKTFLVGDEVINAIK  211 (224)
Q Consensus       147 vvP~G~~H~~~N~G~~~a~~~~~~--~s~~pg~~---~~~-----~~lf~~~p~~p~evla~af~v~~~~v~~l~  211 (224)
                      +||+|.+||++|.|+++...++.+  .+.+++.+   .++     .++|++   +|+|||++||++++++++||.
T Consensus        97 ~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~~~~f~~~~~~~~~svl~~---~~~evLa~aF~v~~e~i~kl~  168 (170)
T d1uija1          97 RIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQG---FSHNILETSFHSEFEEINRVL  168 (170)
T ss_dssp             EECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGG---SCHHHHHHHHTSCHHHHHHHH
T ss_pred             EECCCCeEEEEEcCCCCcEEEEEecCCcCCCccccccccccCCCcccHhHh---CCHHHHHHHhCCCHHHHHHHh
Confidence            999999999999987654444333  23344432   222     478886   999999999999999999986

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.93  E-value=4.4e-26  Score=189.27  Aligned_cols=155  Identities=14%  Similarity=0.143  Sum_probs=117.3

Q ss_pred             CeeeeccCCCcccCCCCceEEEeeccc--CCCCccc-cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC
Q 040384           57 DFFFDLSEEGNLSNAFGRAVTEGNVHE--FPGVNTQ-GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN  133 (224)
Q Consensus        57 df~f~l~~~~~~~~~~g~~~~~~~~~~--~P~l~~~-gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~  133 (224)
                      .|+|..+.........+|+++.++..+  .+.|+++ +++++++++.||++..|||| +|+|++||++|+++++++++++
T Consensus         2 py~F~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~-~a~ev~yV~~G~g~~~~v~~~~   80 (203)
T d1uika1           2 PFHFNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHA-DADYLIVILNGTAILTLVNNDD   80 (203)
T ss_dssp             TTEECGGGEEEEEECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEECSSC
T ss_pred             CeeeccccccCceECCCCeEEEecccCccchhhccccceEEEEEEecCCCccccccC-CCcEEEEEEEEEEEEEEEeCCC
Confidence            456654432233355667788886533  3446655 79999999999999999976 8999999999999999999765


Q ss_pred             eEEEEEECCCCEEEecCCCeeEEEecCCc-cEEEEEEeeCCC----Ccceehh-----hhhhcCCCCCCHHHHHhhcCCC
Q 040384          134 VFYSKVVTAGMLFLIPRGLVHFQLNVGKE-NVLFFPSFNSQL----PGTQFVH-----SSLFNTTPPIPNEVLTKTFLVG  203 (224)
Q Consensus       134 ~~~~~~l~~GDv~vvP~G~~H~~~N~G~~-~a~~~~~~~s~~----pg~~~~~-----~~lf~~~p~~p~evla~af~v~  203 (224)
                      + .+++|++||+++||+|++||++|.|++ .+.++.+.+..|    .+.+.++     .++|++   |+++||++||+++
T Consensus        81 ~-~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~~~~~vl~g---f~~~vL~~aF~v~  156 (203)
T d1uika1          81 R-DSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQG---FSKNILEASYDTK  156 (203)
T ss_dssp             E-EEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGG---SCHHHHHHHHTSC
T ss_pred             e-EEEEecCCCEEEECCCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCccccchhHh---CCHHHHHHHhCCC
Confidence            4 689999999999999999999998865 555555443222    1223333     368886   9999999999999


Q ss_pred             HHHHHHHHhccCC
Q 040384          204 DEVINAIKAAITS  216 (224)
Q Consensus       204 ~~~v~~l~~~~~~  216 (224)
                      .++++||+..+.+
T Consensus       157 ~e~~~kl~~~q~~  169 (203)
T d1uika1         157 FEEINKVLFGREE  169 (203)
T ss_dssp             HHHHHHHTTC---
T ss_pred             HHHHHHHHhcccc
Confidence            9999999866554

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.93  E-value=1.2e-25  Score=186.17  Aligned_cols=150  Identities=12%  Similarity=0.041  Sum_probs=120.5

Q ss_pred             CCCCceEEEee--cccCCCCccc-cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEE-----EEEEC
Q 040384           70 NAFGRAVTEGN--VHEFPGVNTQ-GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFY-----SKVVT  141 (224)
Q Consensus        70 ~~~g~~~~~~~--~~~~P~l~~~-gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~-----~~~l~  141 (224)
                      ...+|+++.+.  .++.+.|+++ ++++.++.+.|+++..|||+ +|++++||++|++++++++++++..     ...++
T Consensus        17 ~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~~-nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~   95 (200)
T d2phla1          17 KNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPI   95 (200)
T ss_dssp             EETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTT
T ss_pred             ECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeecC-CCCEEEEEEeeeEEEEEEECCCCceeehhhccCcc
Confidence            44566687775  4677788876 68999999999999999986 8999999999999999999987532     23689


Q ss_pred             CCCEEEecCCCeeEEEecC-CccEEEEEEeeCC---CCcceehh-----hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 040384          142 AGMLFLIPRGLVHFQLNVG-KENVLFFPSFNSQ---LPGTQFVH-----SSLFNTTPPIPNEVLTKTFLVGDEVINAIKA  212 (224)
Q Consensus       142 ~GDv~vvP~G~~H~~~N~G-~~~a~~~~~~~s~---~pg~~~~~-----~~lf~~~p~~p~evla~af~v~~~~v~~l~~  212 (224)
                      +||+++||+|++||++|.+ +++++++.++++.   ++..+.++     .++|++   |+.++|++||+++.++++||+.
T Consensus        96 ~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~~~~f~lag~~~~~svl~~---f~~evLa~aF~v~~e~~~kl~~  172 (200)
T d2phla1          96 FSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQE---FSKHILEASFNSKFEEINRVLF  172 (200)
T ss_dssp             SCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGG---SCHHHHHHHHTSCHHHHHHHHT
T ss_pred             CCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccceeccccccccHhHc---CCHHHHHHHcCCCHHHHHHHHh
Confidence            9999999999999999987 4578777766433   34444443     378897   9999999999999999999974


Q ss_pred             c--cCCCcceecC
Q 040384          213 A--ITSAQLGHRP  223 (224)
Q Consensus       213 ~--~~~~~~i~r~  223 (224)
                      .  ..+++.|+|.
T Consensus       173 ~~~~q~~g~Iv~~  185 (200)
T d2phla1         173 EEEGQQEGVIVNI  185 (200)
T ss_dssp             CSTTCBSSSEEEC
T ss_pred             ccccccCCceEEc
Confidence            3  4456677764

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.93  E-value=1e-25  Score=190.84  Aligned_cols=149  Identities=14%  Similarity=0.207  Sum_probs=126.3

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCC----------------
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN----------------  133 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~----------------  133 (224)
                      ...|| +++.+..+-+.|+++|+++.|.+|.|+|+..|||. +|+.++||++|+++++++.+++                
T Consensus        18 ~sE~G-~~E~~d~~~~qlqcagV~~~r~~I~p~gL~lP~y~-~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~   95 (239)
T d1fxza1          18 ESEGG-LIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYT-NGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQS   95 (239)
T ss_dssp             EETTE-EEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC-------------
T ss_pred             ccCCc-eEEecCCCChhhhhccchhheeeeccCceecceec-CCCeEEEEEeCEEEEEEecCCChhhhcccccccccccc
Confidence            34566 77888899999999999999999999999999985 9999999999999999996542                


Q ss_pred             ------eEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCC--------Ccceehh------------------
Q 040384          134 ------VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQL--------PGTQFVH------------------  181 (224)
Q Consensus       134 ------~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~--------pg~~~~~------------------  181 (224)
                            +.....|++|||+++|+|++||++|.|+++++++++++..|        +..+.++                  
T Consensus        96 ~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e~~~~~~~~~~~~  175 (239)
T d1fxza1          96 SRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ  175 (239)
T ss_dssp             -----CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHHHC------
T ss_pred             cccchhhhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeeeccCCcccccccccccccccc
Confidence                  11246999999999999999999999999999999987554        3334444                  


Q ss_pred             --------------hhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhcc--CCCcceecC
Q 040384          182 --------------SSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAI--TSAQLGHRP  223 (224)
Q Consensus       182 --------------~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~--~~~~~i~r~  223 (224)
                                    +++|++   |+.++||.||+++.++++||+..+  .++++|||-
T Consensus       176 ~~~~~~~~~~~~~~~ni~~g---Fs~~~La~Afnv~~e~~~klq~~~~~~~rG~IVrv  230 (239)
T d1fxza1         176 SQKGKHQQEEENEGGSILSG---FTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTV  230 (239)
T ss_dssp             -------------CCCGGGG---SCHHHHHHHHTCCHHHHHHHSCC-----CCSEEEC
T ss_pred             cccccccccccccCCCcccc---cCHHHHHHHHCcCHHHHHHHhcccccccCCCEEEE
Confidence                          279997   999999999999999999999876  668999984

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=6.5e-26  Score=203.61  Aligned_cols=139  Identities=23%  Similarity=0.305  Sum_probs=123.3

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEec
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIP  149 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP  149 (224)
                      ...||++++++..+||+++  +++++++.|.||++++||||+++ |+.||++|++++++++++|+.+..+|++||+++||
T Consensus        52 ~~~gg~~r~~~~~~lp~~~--~~a~~~~~L~pga~~~pH~H~~a-e~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P  128 (372)
T d1j58a_          52 LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFP  128 (372)
T ss_dssp             EETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESSC-EEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEEC
T ss_pred             ccCCCeeEEeehhhChhhh--hhhheEEEECCCcCcCCcccCcc-cEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEEC
Confidence            4589999999999999999  78999999999999999999875 99999999999999999998888899999999999


Q ss_pred             CCCeeEEEecCCccEEEEEEeeCCCCcceeh--hhhhhcCCCCCCHHHHHhhcCCCHHHHHHHHhccC
Q 040384          150 RGLVHFQLNVGKENVLFFPSFNSQLPGTQFV--HSSLFNTTPPIPNEVLTKTFLVGDEVINAIKAAIT  215 (224)
Q Consensus       150 ~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~--~~~lf~~~p~~p~evla~af~v~~~~v~~l~~~~~  215 (224)
                      +|.+|+++|. ++++.++.+|++.++.....  ...+|++   +|.|||+++|++++++++++++.+.
T Consensus       129 ~G~~H~i~n~-~dg~e~l~vf~~~~~~~~~~f~~~~~~~~---~p~evLa~af~v~~~~~~~i~~~e~  192 (372)
T d1j58a_         129 SGLPHSIQAL-EEGAEFLLVFDDGSFSENSTFQLTDWLAH---TPKEVIAANFGVTKEEISNLPGKEK  192 (372)
T ss_dssp             TTCCEEEEEE-EEEEEEEEEESCTTCCGGGEEEHHHHHHT---SCHHHHHHHHTCCTGGGTTSCSSCC
T ss_pred             CCCEEEEEeC-CCCcEEEEEECCCCcccccceeecccccc---CCHHHHHHhhCCCHHHHhhcccccc
Confidence            9999999996 46789999999887765332  2345676   9999999999999999999976553

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=4.1e-15  Score=111.42  Aligned_cols=82  Identities=17%  Similarity=0.179  Sum_probs=71.3

Q ss_pred             CCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCcc
Q 040384           84 FPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKEN  163 (224)
Q Consensus        84 ~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~  163 (224)
                      -..+.+....+.+++++||+..++|+|++..|++||++|++++.+   +++  ...+++||++++|+|..|++.|.|+++
T Consensus        31 ~~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~g~~H~~~N~g~~~  105 (115)
T d1o4ta_          31 KEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK--DVPIKAGDVCFTDSGESHSIENTGNTD  105 (115)
T ss_dssp             TTTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCEEEEECCSSSC
T ss_pred             ccccCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE---cCe--eEEeeccEEEEECCCCeEEEEECCCCC
Confidence            344555567788999999999999999888899999999999875   455  589999999999999999999999999


Q ss_pred             EEEEEEe
Q 040384          164 VLFFPSF  170 (224)
Q Consensus       164 a~~~~~~  170 (224)
                      +.++++.
T Consensus       106 ~~~l~I~  112 (115)
T d1o4ta_         106 LEFLAVI  112 (115)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9988764

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=2.6e-14  Score=104.40  Aligned_cols=78  Identities=19%  Similarity=0.259  Sum_probs=70.1

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      +-++.+..+.++||+..++|+|++..|++||++|++++.+   +++  ...+++||++++|+|..|++.|.|+++++++.
T Consensus        25 ~~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~   99 (105)
T d1v70a_          25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE--EALLAPGMAAFAPAGAPHGVRNESASPALLLV   99 (105)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTSCEEEECCSSSCEEEEE
T ss_pred             CCCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE---eee--EEEecceEEEEeCCCCEEEeEECCCCCEEEEE
Confidence            3467888999999999999999988899999999999876   455  68999999999999999999999999999988


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      ++.
T Consensus       100 v~~  102 (105)
T d1v70a_         100 VTA  102 (105)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            764

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.53  E-value=7.8e-14  Score=110.36  Aligned_cols=107  Identities=14%  Similarity=0.064  Sum_probs=84.2

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC----CeEEEEEECCCCE
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD----NVFYSKVVTAGML  145 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----~~~~~~~l~~GDv  145 (224)
                      ...|............+++  .+.+.+.+++||+..++|+| +..|++||++|++.+.+.+.+    ++.....+++||+
T Consensus        21 g~~g~~~~~~~~~~~~g~~--~i~v~~~~l~PG~~~~~H~H-~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~   97 (160)
T d1lr5a_          21 GIEGLSHITVAGALNHGMK--EVEVWLQTISPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTT   97 (160)
T ss_dssp             TCTTEEEEEEECHHHHCCS--SEEEEEEEECTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEE
T ss_pred             CCCCceEEEeecccCCCcc--EEEEEEEEECCCccccceec-cccEEEEEEeeeEEEEECCccccccccceEEEecCCCE
Confidence            3455555555555666666  68999999999999999999 568999999999999875532    2235789999999


Q ss_pred             EEecCCCeeEEEecCC-ccEEEEEEeeCCCCccee
Q 040384          146 FLIPRGLVHFQLNVGK-ENVLFFPSFNSQLPGTQF  179 (224)
Q Consensus       146 ~vvP~G~~H~~~N~G~-~~a~~~~~~~s~~pg~~~  179 (224)
                      +++|+|..|.+.|.|+ +++.++++++..-...+.
T Consensus        98 ~~iP~~~~H~~~N~g~~E~l~~l~i~~~~p~~~~~  132 (160)
T d1lr5a_          98 FSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFL  132 (160)
T ss_dssp             EEECTTCCEEEECCCSSSCEEEEEEEESSSCCEEE
T ss_pred             EEeCCCCcEEEEECCCCCCEEEEEEECCCCceEEe
Confidence            9999999999999996 789988887644443333

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.46  E-value=1.3e-13  Score=102.23  Aligned_cols=83  Identities=19%  Similarity=0.311  Sum_probs=69.9

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      +-.+++.++.++||...++|+|+ ..|++||++|++.+.+   +++ ....+++||++++|+|..|++.|.|++++.+++
T Consensus        23 ~~~~~v~~~~l~pG~~~p~H~H~-~~e~~~Vl~G~~~~~v---~~~-e~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~   97 (108)
T d2b8ma1          23 TEHVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTL---EDQ-EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFV   97 (108)
T ss_dssp             CSSCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEE---TTS-CCEEEETTCEEEECTTCEEEEECCSSSEEEEEE
T ss_pred             CCCEEEEEEEECCCCcChhhccc-ccEEEEEEeeeEEEEE---ecc-cEEEeecceEeeccCCceEEEEcCCCCcEEEEE
Confidence            33678999999999999999995 6899999999999987   232 136899999999999999999999999998886


Q ss_pred             EeeCCCCcc
Q 040384          169 SFNSQLPGT  177 (224)
Q Consensus       169 ~~~s~~pg~  177 (224)
                      +. ++.|..
T Consensus        98 v~-~P~p~~  105 (108)
T d2b8ma1          98 VK-APHPKK  105 (108)
T ss_dssp             EE-CSCGGG
T ss_pred             EE-CCCCcc
Confidence            54 455543

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.46  E-value=1.7e-13  Score=99.87  Aligned_cols=80  Identities=19%  Similarity=0.111  Sum_probs=67.2

Q ss_pred             CCCCccccEEEEEEEEeCCccc--CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384           84 FPGVNTQGISTNRVDLAVGGIN--PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus        84 ~P~l~~~gis~~rv~l~pgg~~--~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      +|.....++.+.+++++||+..  .+|+| ++.|++||++|++++.+   +++  ..+|++||.+.+|.+..|++.|.|+
T Consensus        14 ~p~~~~~~~e~~~~~l~pg~~~~~~~H~h-~~~E~~~Vl~G~~~~~~---~~~--~~~l~~GD~~~~~~~~~H~~~n~~~   87 (99)
T d1y9qa2          14 FPYAADTGLEIFEITLLDHHQQMSSPHAL-GVIEYIHVLEGIMKVFF---DEQ--WHELQQGEHIRFFSDQPHGYAAVTE   87 (99)
T ss_dssp             EEEETTTTEEEEEEEECTTCEEEECCCST-TCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEEECSSSEEEEESSS
T ss_pred             ecCCCcCCEEEEEEEEeCCcEeccccccC-CcEEEEEEEcCceEEEe---cce--EEEecCCCEEEECCCCeEEEEeCCc
Confidence            3444555799999999999965  67877 56899999999999987   455  7899999999999999999999999


Q ss_pred             ccEEEEEE
Q 040384          162 ENVLFFPS  169 (224)
Q Consensus       162 ~~a~~~~~  169 (224)
                      +++.++.+
T Consensus        88 ~~~~~~vi   95 (99)
T d1y9qa2          88 KAVFQNIV   95 (99)
T ss_dssp             CEEEEEEE
T ss_pred             cCEEEEEE
Confidence            98755443

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=2.2e-13  Score=101.53  Aligned_cols=75  Identities=19%  Similarity=0.255  Sum_probs=67.9

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      ++.+..+.++||+..++|+|+ ..|++||++|++++.+   +++  .+.+++||.+++|+|..|++.|.|++++.+++++
T Consensus        35 ~~~~~~~~i~pG~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~ii  108 (114)
T d1vj2a_          35 NFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLK---EQG--EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLI  108 (114)
T ss_dssp             SEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             ceEEEEEEECCCCCCCceECC-CcEEEEEEEceeEEEE---eee--eeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEEE
Confidence            578889999999999999996 5799999999998875   444  6899999999999999999999999999999987


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      .
T Consensus       109 p  109 (114)
T d1vj2a_         109 P  109 (114)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.31  E-value=1.6e-11  Score=99.61  Aligned_cols=83  Identities=17%  Similarity=0.287  Sum_probs=72.0

Q ss_pred             cEEEEEEEEeCCccc------CceecC--CCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384           91 GISTNRVDLAVGGIN------PPHLHP--RSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKE  162 (224)
Q Consensus        91 gis~~rv~l~pgg~~------~pH~Hp--~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~  162 (224)
                      ++.+....+.||.+.      ..|||+  +..|++||++|++++.+.+.++......+++||++++|+|..|...|+|++
T Consensus        66 ~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~Gde  145 (190)
T d1x82a_          66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDE  145 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSS
T ss_pred             CeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECCCC
Confidence            688899999999754      358886  457999999999999998776666678999999999999999999999999


Q ss_pred             cEEEEEEeeCC
Q 040384          163 NVLFFPSFNSQ  173 (224)
Q Consensus       163 ~a~~~~~~~s~  173 (224)
                      ++++++++.+.
T Consensus       146 ~L~~l~v~~~~  156 (190)
T d1x82a_         146 PFIFLAIYPAD  156 (190)
T ss_dssp             CEEEEEEEETT
T ss_pred             CEEEEEEECCC
Confidence            99999988753

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=1.5e-11  Score=94.57  Aligned_cols=81  Identities=20%  Similarity=0.242  Sum_probs=69.8

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+++.+++++||+-.++|+|+. .|++||++|+++++..  +++  ...+++||++++|+|..||..|.+++++..+++.
T Consensus        34 ~~~~~~vtf~PG~~~~~H~H~~-~q~~~Vl~G~~~~~~~--g~~--~~~~~~Gd~v~ippg~~H~~~a~~~~~~~~lai~  108 (134)
T d2f4pa1          34 NTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQER--GKP--ARILKKGDVVEIPPNVVHWHGAAPDEELVHIGIS  108 (134)
T ss_dssp             SCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEET--TSC--CEEEETTCEEEECTTCCEEEEEBTTBCEEEEEEE
T ss_pred             eeEEEEEEECCCCcCccccCCC-CEEEEEEeCEEEEEEC--Ccc--eEEEcCCCeEEECCCCceECccCCCCcEEEEEEE
Confidence            4789999999999999999975 7999999999998762  233  4799999999999999999999999999998887


Q ss_pred             eCCCCc
Q 040384          171 NSQLPG  176 (224)
Q Consensus       171 ~s~~pg  176 (224)
                      ...+.+
T Consensus       109 ~~~~~~  114 (134)
T d2f4pa1         109 TQVHLG  114 (134)
T ss_dssp             CCGGGC
T ss_pred             ecCCCC
Confidence            654443

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.21  E-value=3.8e-11  Score=88.88  Aligned_cols=73  Identities=21%  Similarity=0.292  Sum_probs=62.3

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .-++.+..+.++||...++|+|+. .|++||++|++++.+   +++  ...+++||++++|+|..|...|.++..+.++
T Consensus        34 ~~~~~i~~~~~~~G~~~~~H~h~~-~~~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~a~~~~~~l~~  106 (112)
T d1yhfa1          34 RQDLGITVFSLDKGQEIGRHSSPG-DAMVTILSGLAEITI---DQE--TYRVAEGQTIVMPAGIPHALYAVEAFQMLLV  106 (112)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSS-EEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTSCEEEEESSCEEEEEE
T ss_pred             CCCcEEEEEEECCCCCcceEECCC-CEEEEEEeCEEEEEE---ccE--EEEecCCEEEEcCCCCeEEeEECCCcEEEEE
Confidence            346788889999999999999975 899999999999886   455  6899999999999999999999876544433

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=2.4e-11  Score=104.85  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=68.3

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      ++.+....|+||+..++|+|+ ..|+.||++|++++..++  ++  +..+++||++++|+|..|...|.|++++.++.++
T Consensus        53 ~l~~~~~~l~PG~~~~~H~H~-~~e~~~vl~G~g~~t~~~--~~--~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~~  127 (308)
T d2d40a1          53 TLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAVD--GE--RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL  127 (308)
T ss_dssp             SCEEEEEEECTTCEEEEEEES-SCEEEEEEECSSCEEEET--TE--EEECCTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             cceeeeEEECCCCccccccCc-hhheEEEEEeeEEEEEec--CE--EEEecCCCEEEeCCCceEEeEECCCCCEEEEEEe
Confidence            577888899999999999995 689999999999877665  44  5789999999999999999999999999999888


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      +
T Consensus       128 d  128 (308)
T d2d40a1         128 D  128 (308)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.16  E-value=8.7e-11  Score=102.99  Aligned_cols=83  Identities=12%  Similarity=0.118  Sum_probs=69.6

Q ss_pred             cEEEEEEEEeCCcc--cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           91 GISTNRVDLAVGGI--NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        91 gis~~rv~l~pgg~--~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .+++.+..+.||+.  .+||||.+..|++||++|++++.+.+.++......+++||++.+|+|..|.+.|.+++ ..++.
T Consensus        45 ~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~~-~~~l~  123 (348)
T d1juha_          45 AFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPD-TEMTG  123 (348)
T ss_dssp             SCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTT-EEEEE
T ss_pred             eEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEeeEeCCCC-cEEEE
Confidence            47899999999985  4789998888999999999999988765544578999999999999999999999864 56666


Q ss_pred             EeeCCC
Q 040384          169 SFNSQL  174 (224)
Q Consensus       169 ~~~s~~  174 (224)
                      ++....
T Consensus       124 v~~pg~  129 (348)
T d1juha_         124 VIVPGG  129 (348)
T ss_dssp             EEESSC
T ss_pred             EECCCc
Confidence            665443

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.13  E-value=1e-09  Score=91.77  Aligned_cols=82  Identities=13%  Similarity=0.128  Sum_probs=69.7

Q ss_pred             CCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccE
Q 040384           85 PGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENV  164 (224)
Q Consensus        85 P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a  164 (224)
                      |.-..-.+.+..++++||+..+.|.|....|++||++|++++.+   +++  .+.+++||++++|++..|++.|.|++++
T Consensus       158 p~~~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i---~~~--~~~v~~GD~i~~~~~~~H~~~n~g~~~~  232 (245)
T d1sfna_         158 PDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EEN--YYPVTAGDIIWMGAHCPQWYGALGRNWS  232 (245)
T ss_dssp             CCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEESSSCE
T ss_pred             CcccccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE---CCE--EEEecCCCEEEECCCCCEeeEeCCCCCE
Confidence            44444568899999999999998764467899999999999887   455  6899999999999999999999999999


Q ss_pred             EEEEEee
Q 040384          165 LFFPSFN  171 (224)
Q Consensus       165 ~~~~~~~  171 (224)
                      .++..-+
T Consensus       233 ~~l~~k~  239 (245)
T d1sfna_         233 KYLLYKD  239 (245)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9875544

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.13  E-value=2.9e-10  Score=98.56  Aligned_cols=76  Identities=13%  Similarity=0.097  Sum_probs=66.3

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+++..+.+.||+..++|||++..|++||++|++++.+   +++  ...+++||++++|+|..|++.|.++ ++.++.++
T Consensus       213 ~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v---~~~--~~~~~~Gd~~~vP~g~~H~~~~~~~-~~~~l~~~  286 (330)
T d1y3ta1         213 QFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DGQ--EIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVL  286 (330)
T ss_dssp             SCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECSS-SEEEEEEE
T ss_pred             cEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEE---CCE--EEEeCCCCEEEECcCCcEEeEeCCC-CeEEEEEE
Confidence            47788899999999999999888899999999999976   455  6899999999999999999999764 67877777


Q ss_pred             eC
Q 040384          171 NS  172 (224)
Q Consensus       171 ~s  172 (224)
                      ..
T Consensus       287 ~p  288 (330)
T d1y3ta1         287 VP  288 (330)
T ss_dssp             ES
T ss_pred             CC
Confidence            54

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.12  E-value=1.6e-10  Score=100.31  Aligned_cols=76  Identities=17%  Similarity=0.176  Sum_probs=66.1

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+++.++.++||+..++|+|+++.|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.|++ ..++..+
T Consensus        41 ~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~l~~~  114 (330)
T d1y3ta1          41 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DGE--RYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYT  114 (330)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECSTT-EEEEEEE
T ss_pred             cEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEE---CCE--EEEEcCCCEEEeCCCCeEEEEEcCCC-eEEEEEE
Confidence            58999999999999999999888999999999999975   455  68999999999999999999999875 5555555


Q ss_pred             eC
Q 040384          171 NS  172 (224)
Q Consensus       171 ~s  172 (224)
                      ..
T Consensus       115 ~p  116 (330)
T d1y3ta1         115 MK  116 (330)
T ss_dssp             ET
T ss_pred             CC
Confidence            43

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.10  E-value=3.9e-10  Score=94.60  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             cCCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC-
Q 040384           83 EFPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK-  161 (224)
Q Consensus        83 ~~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~-  161 (224)
                      -+|.-....+.+..+.++||+..+.|+|....|++||++|++++.+   +++  .+.+++||++++|++..|+..|.|. 
T Consensus       159 ~~p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~---~~~--~~~~~~GD~i~~~~~~pH~~~n~G~~  233 (250)
T d1sefa_         159 LLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNE--WYPVEKGDYIFMSAYVPQAAYAVGRE  233 (250)
T ss_dssp             CSCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEECSS
T ss_pred             ecCccccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEE---CCE--EEEecCCCEEEECCCCCEEeEcCCCC
Confidence            3455555679999999999999986444467899999999999886   455  6899999999999999999999995 


Q ss_pred             ccEEEEE
Q 040384          162 ENVLFFP  168 (224)
Q Consensus       162 ~~a~~~~  168 (224)
                      ++++++.
T Consensus       234 ~~~~~l~  240 (250)
T d1sefa_         234 EPLMYVY  240 (250)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEE
Confidence            5655553

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.08  E-value=7.1e-10  Score=94.38  Aligned_cols=76  Identities=16%  Similarity=0.202  Sum_probs=67.2

Q ss_pred             ccEEEEEEEEeCCcccC-ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384           90 QGISTNRVDLAVGGINP-PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      ..+.+..+.++||+..+ +|+|. ..|++||++|++++.+   +++  ...+++||++++|++..|+++|.|++++.++.
T Consensus       187 ~d~~~~i~~~~PG~~~~~~h~H~-~ee~~~vl~G~~~~~~---~~~--~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~  260 (273)
T d1sq4a_         187 HDMHVNIVNFEPGGVIPFAETHV-MEHGLYVLEGKAVYRL---NQD--WVEVEAGDFMWLRAFCPQACYSGGPGRFRYLL  260 (273)
T ss_dssp             CSEEEEEEEECSSSEESCCCCCS-EEEEEEEEECEEEEEE---TTE--EEEEETTCEEEEEESCCEEEECCSSSCEEEEE
T ss_pred             cceEEEEEEEccCCccccccccc-cceEEEEEccEEEEEE---CCE--EEEecCCCEEEECCCCCEEeEeCCCCCEEEEE
Confidence            46889999999999765 79996 5799999999999887   455  68999999999999999999999999999887


Q ss_pred             Eee
Q 040384          169 SFN  171 (224)
Q Consensus       169 ~~~  171 (224)
                      ..+
T Consensus       261 ~kd  263 (273)
T d1sq4a_         261 YKD  263 (273)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2.6e-10  Score=95.75  Aligned_cols=82  Identities=13%  Similarity=0.165  Sum_probs=64.4

Q ss_pred             CCCCccccEEEEEEEEeCCcccC-ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384           84 FPGVNTQGISTNRVDLAVGGINP-PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKE  162 (224)
Q Consensus        84 ~P~l~~~gis~~rv~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~  162 (224)
                      .|.-...++.+..+.++||+..+ +|.| ...|++||++|++++.+   +++  .+.+++||++++|+|.+|+..|.|.+
T Consensus       163 ~p~~~~~~~~~~~~~~~PG~~~~~~h~h-~~ee~~~vl~G~g~~~i---~~~--~~~~~~GD~i~~~~~~ph~~~~~g~~  236 (253)
T d1rc6a_         163 LPKELGFDMNMHILSFAPGASHGYIETH-VQEHGAYILSGQGVYNL---DNN--WIPVKKGDYIFMGAYSLQAGYGVGRG  236 (253)
T ss_dssp             SCCSTTCSEEEEEEEECTTCCBEEEEEE-SSCEEEEEEESEEEEES---SSC--EEEEETTCEEEECSSEEEEEEEC---
T ss_pred             cCccccccEEEEEEEECCCceEeEEEeC-CceEEEEEeCCEEEEEE---CCE--EEEecCCCEEEECCCCCEeeeeCCCC
Confidence            34555557899999999999876 7888 56899999999999876   455  68999999999999999999999976


Q ss_pred             cEEEEEEee
Q 040384          163 NVLFFPSFN  171 (224)
Q Consensus       163 ~a~~~~~~~  171 (224)
                      ++..+..+.
T Consensus       237 ~~~~~~~~~  245 (253)
T d1rc6a_         237 EAFSYIYSK  245 (253)
T ss_dssp             -CEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            665454554

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.05  E-value=2.6e-10  Score=99.94  Aligned_cols=73  Identities=18%  Similarity=0.169  Sum_probs=63.9

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .+++..+.+.||++..||||.+++|++||++|++++.+.+  ++  ...|++||+++||+|..|...|.+.....++
T Consensus       248 ~~~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~~--~~--~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~  320 (348)
T d1juha_         248 TLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGD--YA--ATELGSGDVAFIPGGVEFKYYSEAYFSKVLF  320 (348)
T ss_dssp             EEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETT--SC--CEEECTTCEEEECTTCCEEEEESSSSEEEEE
T ss_pred             ceeEEEEEecCCCCCCCcccCCCCEEEEEEeceEEEEeCC--cc--eEEecCCCEEEECCCCcEEEEeCCCCcEEEE
Confidence            5788899999999999999999999999999999998733  33  4689999999999999999999998764443

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.05  E-value=9.4e-10  Score=82.76  Aligned_cols=77  Identities=12%  Similarity=0.134  Sum_probs=61.7

Q ss_pred             cEEEEEEEEeCCcccCc---eecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec-CCccEEE
Q 040384           91 GISTNRVDLAVGGINPP---HLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV-GKENVLF  166 (224)
Q Consensus        91 gis~~rv~l~pgg~~~p---H~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~-G~~~a~~  166 (224)
                      ++-..++++.|++....   |-| ...|++||++|++++.+.+.. ...+..|++||.+.+|++..|.+.|. |++++.+
T Consensus        40 ~~~~~~i~v~~~~~~~~~~~~~H-~~eE~~yVl~G~~~~~~g~~~-~~~~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~~  117 (122)
T d2bnma2          40 SLVPLVVDVLTDNPDDAKFNSGH-AGNEFLFVLEGEIHMKWGDKE-NPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKL  117 (122)
T ss_dssp             TCEEEEEEECCCCGGGCCCCCCC-SSCEEEEEEESCEEEEESCTT-SCEEEEECTTCEEEECTTCCEEEEESTTSCCEEE
T ss_pred             ccEeEEEEEeCCCCCccccCCCc-ccEEEEEEEEEEEEEEEeccc-CCEEEEEccCcEEEeCCCCCEEEEcCCCCccEEE
Confidence            56777899999886543   336 568999999999999875432 12368999999999999999999996 7888887


Q ss_pred             EEE
Q 040384          167 FPS  169 (224)
Q Consensus       167 ~~~  169 (224)
                      +++
T Consensus       118 l~V  120 (122)
T d2bnma2         118 IAV  120 (122)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.04  E-value=4.3e-10  Score=98.86  Aligned_cols=77  Identities=16%  Similarity=0.205  Sum_probs=68.7

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+.+....|.||...++|+| .+.++.||++|++....++  |+  ...+++||++++|.|..|...|.|++++.++.++
T Consensus        86 ~l~~~~~~l~PGe~~~~H~H-~~~~~~~vi~G~g~~t~v~--g~--~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~~  160 (351)
T d2phda1          86 TMWAGIQYLGPRETAPEHRH-SQNAFRFVVEGEGVWTVVN--GD--PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGL  160 (351)
T ss_dssp             SCEEEEEEECTTCEEEEEEE-SSCEEEEEEECEEEEEEET--TE--EEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             hhhhheEEECCCCcCCcccc-ccceeEEEEECCcEEEEEC--CE--EEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEee
Confidence            67778888999999999999 5789999999999877765  54  5799999999999999999999999999999888


Q ss_pred             eC
Q 040384          171 NS  172 (224)
Q Consensus       171 ~s  172 (224)
                      +.
T Consensus       161 d~  162 (351)
T d2phda1         161 DI  162 (351)
T ss_dssp             CH
T ss_pred             cC
Confidence            53

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.99  E-value=2.8e-09  Score=93.77  Aligned_cols=93  Identities=16%  Similarity=0.029  Sum_probs=72.8

Q ss_pred             CCCCceEEEeeccc-CCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEe
Q 040384           70 NAFGRAVTEGNVHE-FPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLI  148 (224)
Q Consensus        70 ~~~g~~~~~~~~~~-~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vv  148 (224)
                      ...|..+..++..+ .+...++  ++....++||....+|+|+ .+|++||++|++++.+   +++  +..+++||++++
T Consensus       235 ~~~g~~l~y~nP~tg~~~~~ti--~~~~~~l~pG~~~~~hrH~-~~~v~~v~~G~g~~~i---~g~--~~~~~~GDv~~v  306 (355)
T d3bu7a1         235 PYDGLILRYTNPQTGGHPMLTM--GASMQMLRPGEHTKAHRHT-GNVIYNVAKGQGYSIV---GGK--RFDWSEHDIFCV  306 (355)
T ss_dssp             TTTBEEEEECCTTTSSCSSSSC--EEEEEEECTTCBCCCEEES-SCEEEEEEECCEEEEE---TTE--EEEECTTCEEEE
T ss_pred             CCCceEEEeccccccCCCccee--eEEEEEECCCCccCCcCcc-CcEEEEEEECcEEEEE---CCE--EEEeeCCCEEEe
Confidence            44667677666544 4667754  5556678999999999995 5799999999999887   455  689999999999


Q ss_pred             cCCCeeEEEecCCccEEEEEEe
Q 040384          149 PRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus       149 P~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      |++..|...|.++++..++..+
T Consensus       307 P~~~~h~~~N~s~~e~~~Lf~~  328 (355)
T d3bu7a1         307 PAWTWHEHCNTQERDDACLFSF  328 (355)
T ss_dssp             CTTCCEEEEECCSSCCEEEEEE
T ss_pred             CCCCcEEeecCCCCCcEEEEEe
Confidence            9999999999997654444333

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.98  E-value=8.4e-10  Score=92.48  Aligned_cols=85  Identities=12%  Similarity=0.049  Sum_probs=67.9

Q ss_pred             eecccCCCCccccEEEEEEEEeCCcccC-ceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384           79 GNVHEFPGVNTQGISTNRVDLAVGGINP-PHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL  157 (224)
Q Consensus        79 ~~~~~~P~l~~~gis~~rv~l~pgg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~  157 (224)
                      +...--|.+ +.++++..++++|||-.. +|.|.+..|++||++|++++.+   +++  ...|++||.+++|+|..|.+.
T Consensus        36 ~~~L~sp~~-Ga~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~  109 (250)
T d1sefa_          36 ISILGSPKL-GATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD---GQE--THELEAGGYAYFTPEMKMYLA  109 (250)
T ss_dssp             EEECSCGGG-TCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTSCCEEE
T ss_pred             EEEEcCccc-CCcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEE---CCE--EEEEcCCCEEEEcCCCcEEEE
Confidence            333334555 346889999999999654 4445566779999999999886   344  589999999999999999999


Q ss_pred             ecCCccEEEEEE
Q 040384          158 NVGKENVLFFPS  169 (224)
Q Consensus       158 N~G~~~a~~~~~  169 (224)
                      |.|++++.++.+
T Consensus       110 N~~~~~~~~l~v  121 (250)
T d1sefa_         110 NAQEADTEVFLY  121 (250)
T ss_dssp             ESSSSCEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999988876

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.94  E-value=3.1e-09  Score=90.29  Aligned_cols=94  Identities=18%  Similarity=0.111  Sum_probs=75.5

Q ss_pred             CCceEEEeecccCCCCcc-ccEEEEEEEEeCCcc-cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEec
Q 040384           72 FGRAVTEGNVHEFPGVNT-QGISTNRVDLAVGGI-NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIP  149 (224)
Q Consensus        72 ~g~~~~~~~~~~~P~l~~-~gis~~rv~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP  149 (224)
                      .+..=+.++...-|.... ..++...++++|||. ..||.|+++.|++||++|++++.+   +++  .+.|++||.+++|
T Consensus        45 P~w~~~~~~vl~~p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~---~g~--~~~L~~Gd~~y~P  119 (273)
T d1sq4a_          45 PFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL---QGQ--VHAMQPGGYAFIP  119 (273)
T ss_dssp             TTCEEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE---SSC--EEEECTTEEEEEC
T ss_pred             CCCCCceEEEECCcccCCCcceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEE---CCE--EEEecCCCEEEEC
Confidence            334345555556665553 368999999999985 567777788899999999999986   455  6899999999999


Q ss_pred             CCCeeEEEecCCccEEEEEEe
Q 040384          150 RGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus       150 ~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      +|..|.+.|.|++++.++.+-
T Consensus       120 ~g~~h~~~N~g~~~a~~l~i~  140 (273)
T d1sq4a_         120 PGADYKVRNTTGQHTRFHWIR  140 (273)
T ss_dssp             TTCCEEEECCSSSCEEEEEEE
T ss_pred             CCCcEeeeecCCCCEEEEEEE
Confidence            999999999999999887654

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.92  E-value=1.2e-09  Score=82.53  Aligned_cols=71  Identities=15%  Similarity=0.113  Sum_probs=57.8

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+++....++||.   .|||....|++||++|++++.+   +|+  ...|++||+++||+|..|.+.|.++  ++++.++
T Consensus        53 ~~~~~~~~~~~g~---~~~~~~~~E~~~vl~G~~~~~~---~g~--~~~l~~Gd~~~~p~g~~h~~~~~~~--~~~~~v~  122 (128)
T d2pyta1          53 SMAAGFMQWDNAF---FPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPTS--VRFLYVA  122 (128)
T ss_dssp             SSEEEEEEEEEEE---EEEECSSEEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEEEEE--EEEEEEE
T ss_pred             ceEEEEEEECCCc---cceeCCccEEEEEEEeEEEEEE---CCE--EEEecCCCEEEECCCCEEEEEeCCC--EEEEEEE
Confidence            4667778888885   4778788999999999999975   465  6899999999999999999999754  5555544


Q ss_pred             e
Q 040384          171 N  171 (224)
Q Consensus       171 ~  171 (224)
                      .
T Consensus       123 ~  123 (128)
T d2pyta1         123 W  123 (128)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.7e-09  Score=89.39  Aligned_cols=81  Identities=17%  Similarity=0.171  Sum_probs=67.0

Q ss_pred             CCCCccccEEEEEEEEeCCcccCceecCC-CCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384           84 FPGVNTQGISTNRVDLAVGGINPPHLHPR-SSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKE  162 (224)
Q Consensus        84 ~P~l~~~gis~~rv~l~pgg~~~pH~Hp~-a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~  162 (224)
                      -|.+. .++.+..++++|||....|+|.. ..|++||++|++++.+   +++  ...+++||.+++|+|..|.+.|.|++
T Consensus        44 sp~~g-~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~N~~~~  117 (253)
T d1rc6a_          44 TPKLG-ASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGK--TFALSEGGYLYCPPGSLMTFVNAQAE  117 (253)
T ss_dssp             CGGGT-CSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCCCEEEECSSS
T ss_pred             CcccC-CceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCC
Confidence            34443 47899999999999776666654 4568999999999886   454  68999999999999999999999999


Q ss_pred             cEEEEEEe
Q 040384          163 NVLFFPSF  170 (224)
Q Consensus       163 ~a~~~~~~  170 (224)
                      ++.++.+-
T Consensus       118 ~~~~l~v~  125 (253)
T d1rc6a_         118 DSQIFLYK  125 (253)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEE
Confidence            99988664

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.80  E-value=1.3e-08  Score=89.38  Aligned_cols=76  Identities=14%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec-CCccEEEEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV-GKENVLFFPS  169 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~-G~~~a~~~~~  169 (224)
                      .+.+....+.||...++|+| ...++.||++|++....++  |+  ...+++||++++|.|..|...|. ++++++++.+
T Consensus        84 ~l~~~~q~l~PGe~~~~HrH-~~~~~~~vi~G~g~~t~v~--ge--~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~  158 (355)
T d3bu7a1          84 WLFSGIQTMKAGERAGAHRH-AASALRFIMEGSGAYTIVD--GH--KVELGANDFVLTPNGTWHEHGILESGTECIWQDG  158 (355)
T ss_dssp             TBEEEEEEECTTCBCCCEEE-SSCEEEEEEECSCEEEEET--TE--EEEECTTCEEEECTTCCEEEEECTTCCCEEEEEE
T ss_pred             hhhhheEeeCCCCcCccccc-ccceeEEEEECCcEEEEEC--CE--EEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEe
Confidence            58888899999999999999 5789999999999777664  54  57899999999999999999996 4667877766


Q ss_pred             ee
Q 040384          170 FN  171 (224)
Q Consensus       170 ~~  171 (224)
                      .+
T Consensus       159 ~D  160 (355)
T d3bu7a1         159 LD  160 (355)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.1e-08  Score=85.99  Aligned_cols=90  Identities=16%  Similarity=-0.018  Sum_probs=69.6

Q ss_pred             CCCCceEEEeecccC-CCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEe
Q 040384           70 NAFGRAVTEGNVHEF-PGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLI  148 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~-P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vv  148 (224)
                      ...|..+...+.... +...  .+.+....++||....+|+| ...|++||++|++++.+   +++  +..+++||++++
T Consensus       201 ~~~g~~v~~~~~~~~~~~~~--t~~~~~~~l~pG~~~~~h~h-~~~~~~~v~~G~g~~~v---~~~--~~~~~~GD~~~v  272 (308)
T d2d40a1         201 EWDGYKMRYVNPVTGGYPMP--SMGAFLQLLPKGFASRVART-TDSTIYHVVEGSGQVII---GNE--TFSFSAKDIFVV  272 (308)
T ss_dssp             TTTBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCBEE-SSCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEE
T ss_pred             CCCceEEEeeccccccCccc--eeEEEEEEccCCCccCCccC-ChheEEEEEeCcEEEEE---CCE--EEEEeCCCEEEe
Confidence            345666666665443 4555  45666777999999999999 56899999999999877   455  579999999999


Q ss_pred             cCCCeeEEEecCCccEEEEEE
Q 040384          149 PRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       149 P~G~~H~~~N~G~~~a~~~~~  169 (224)
                      |.+..|...|.++  ..++.+
T Consensus       273 P~~~~h~~~~~~d--~~l~~v  291 (308)
T d2d40a1         273 PTWHGVSFQTTQD--SVLFSF  291 (308)
T ss_dssp             CTTCCEEEEEEEE--EEEEEE
T ss_pred             CCCCeEEEEcCCC--eEEEEE
Confidence            9999999998764  444544

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.74  E-value=6.3e-08  Score=84.71  Aligned_cols=87  Identities=15%  Similarity=0.044  Sum_probs=67.8

Q ss_pred             CceEEEeeccc-CCCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCC
Q 040384           73 GRAVTEGNVHE-FPGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRG  151 (224)
Q Consensus        73 g~~~~~~~~~~-~P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G  151 (224)
                      +..+..++..+ .+.+++++  +....++||....+|+| .++|++||++|++++.+   +++  +..+++||++++|.+
T Consensus       245 ~~~l~yvnp~tg~~~~~t~~--~~~~~l~pG~~~~~hrh-~~~~v~~vi~G~g~~~i---~~~--~~~~~~gDvf~vP~~  316 (351)
T d2phda1         245 HAAIRYVNPTTGGDVMPTLR--CEFHRLRAGTETATRNE-VGSTVFQVFEGAGAVVM---NGE--TTKLEKGDMFVVPSW  316 (351)
T ss_dssp             EEEEEEBCTTTSSBSBTTBE--EEEEEECTTCBCCCEEE-SSCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTT
T ss_pred             ceeEEEeccccCCCcCCcce--EEEEEecCCCcCCCccc-cCcEEEEEEeCcEEEEE---CCE--EEEEcCCCEEEeCCC
Confidence            44555565443 66777654  45555889999999999 46899999999999987   455  689999999999999


Q ss_pred             CeeEEEecCCccEEEEEE
Q 040384          152 LVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       152 ~~H~~~N~G~~~a~~~~~  169 (224)
                      ..|...|.+  ++.++.+
T Consensus       317 ~~h~~~n~~--~~~Lf~~  332 (351)
T d2phda1         317 VPWSLQAET--QFDLFRF  332 (351)
T ss_dssp             CCEEEEESS--CEEEEEE
T ss_pred             CcEEEecCC--CeEEEEE
Confidence            999999965  4555544

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.71  E-value=2.9e-08  Score=82.75  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=75.0

Q ss_pred             CCCCccCCCeee-eccCCCcccCCCCceEEEeecccCCCC-ccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEE
Q 040384           49 PETEVTSDDFFF-DLSEEGNLSNAFGRAVTEGNVHEFPGV-NTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLV  126 (224)
Q Consensus        49 ~~~~vt~~df~f-~l~~~~~~~~~~g~~~~~~~~~~~P~l-~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v  126 (224)
                      +.+.+|+++|++ .+  |+ .   .+.++...-   -|.. .+..+++..++++|||-.  |.| ...|++||++|++++
T Consensus        14 ~~a~i~P~~~v~s~~--P~-w---~~~~~~~l~---sP~~g~~~~F~~~~v~~~pGg~~--~~~-~~E~~~~Vl~G~~~~   81 (245)
T d1sfna_          14 SHAVITPETFVRTAL--AE-W---PGSAIVLHI---APVVGLGARFVQFTAEMPAGAQA--TES-VYQRFAFVLSGEVDV   81 (245)
T ss_dssp             TEEEECGGGCCCBCC--TT-S---TTCEEEEEE---CTTSTTCCSSEEEEEEECTTCEE--ECC-SSEEEEEEEEEEEEE
T ss_pred             ceEEECCcccEecCC--CC-C---CCcEEEEEe---cCCCCCCCceEEEEEEECCCCCC--CCC-CccEEEEEEECEEEE
Confidence            356777888876 33  21 1   222232222   2321 123678999999999864  444 457999999999998


Q ss_pred             EEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEe
Q 040384          127 GIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSF  170 (224)
Q Consensus       127 ~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~  170 (224)
                      .+   +++  .+.|++||.+++|+|..|.+.|.|++++.++-..
T Consensus        82 ~~---~g~--~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~~~~  120 (245)
T d1sfna_          82 AV---GGE--TRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKP  120 (245)
T ss_dssp             EC---SSC--EEEECTTEEEEECTTCCCEEEEEEEEEEEEEEEC
T ss_pred             EE---CCE--EEEecCCCEEEeCCCCcEEEEeCCCccEEEEEee
Confidence            75   344  6899999999999999999999999888877543

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.55  E-value=2.6e-08  Score=79.45  Aligned_cols=66  Identities=15%  Similarity=0.190  Sum_probs=54.3

Q ss_pred             cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeC
Q 040384          105 NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNS  172 (224)
Q Consensus       105 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s  172 (224)
                      ...|.|+. .|+.||++|++++.+.+ +++.+...+++||+++||+|..||.....+....++-.|.+
T Consensus        93 ~~EH~H~~-dEvr~vv~G~g~f~v~~-~d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~  158 (179)
T d1zrra1          93 LNEHTHGE-DEVRFFVEGAGLFCLHI-GDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDN  158 (179)
T ss_dssp             HSCBEESS-CEEEEEEESCCCCCEEC-SSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECC
T ss_pred             cccccCCC-ceEEEEEeCeEEEEEEc-CCeEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecC
Confidence            35799975 89999999999998876 46777789999999999999999996655556667766653

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=2.4e-07  Score=73.67  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=58.3

Q ss_pred             CceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEEeeCCCCcce
Q 040384          106 PPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQ  178 (224)
Q Consensus       106 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~  178 (224)
                      .-|.|+. .|+.||++|++.+.+-+.+++.+...+++||++++|+|..||..-..+....++-.|. ..|+-.
T Consensus        86 ~EH~H~~-~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~~~v~aiRlF~-~~~~W~  156 (179)
T d1vr3a1          86 EEHLHLD-EEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFV-GEPVWT  156 (179)
T ss_dssp             SCEECSS-CEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEES-SSCCCC
T ss_pred             hceeCCC-cEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCCCCEEEEEEEC-CCCeee
Confidence            5899975 7999999999999998877888889999999999999999999755555566666664 355543

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=98.21  E-value=1.4e-05  Score=60.30  Aligned_cols=95  Identities=6%  Similarity=0.003  Sum_probs=68.1

Q ss_pred             CCceEEEeecccCCCCccccEEEEEE-EEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC
Q 040384           72 FGRAVTEGNVHEFPGVNTQGISTNRV-DLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR  150 (224)
Q Consensus        72 ~g~~~~~~~~~~~P~l~~~gis~~rv-~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~  150 (224)
                      ..|.++.....+.-..+-.  .+..+ ...+|.++..|+|...+++++|++|++++.+.+...+......+.++.+.+|+
T Consensus        13 ~RG~l~~i~~~~~~~f~~k--r~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPp   90 (135)
T d2pa7a1          13 SRGSLVAIEENKNIPFSIK--RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGP   90 (135)
T ss_dssp             TTEEEEEEETTTTSSSCCC--EEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECT
T ss_pred             CCCCEEEEEcccccccccc--eEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCC
Confidence            3456776665544333322  22222 35678899999999999999999999999888765554444458889999999


Q ss_pred             CCeeEEEecCCccEEEEEE
Q 040384          151 GLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       151 G~~H~~~N~G~~~a~~~~~  169 (224)
                      |.+|.+.+.+++ ++++..
T Consensus        91 g~~h~~~~l~~~-s~ll~l  108 (135)
T d2pa7a1          91 AVWHEMHDFSSD-CVMMVL  108 (135)
T ss_dssp             TCEEEEECCCTT-CEEEEE
T ss_pred             CEeeeEEecCCC-cEEEEE
Confidence            999999998765 444433

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=98.12  E-value=1.3e-06  Score=66.90  Aligned_cols=77  Identities=17%  Similarity=0.050  Sum_probs=57.6

Q ss_pred             ccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEEE
Q 040384           90 QGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus        90 ~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .|.....++++||+..++|+|+ +.|.+||++|+++.+-.+...   ...+.+|+.++.|+|..|... .+++.++++..
T Consensus        41 tg~~~~l~r~~~G~~~p~H~H~-~~e~~~VL~G~l~~~~g~~~~---g~~~~~g~y~~~Pag~~H~~~-~~~e~~~~~~~  115 (144)
T d2o1qa1          41 MGSWTAIFDCPAGSSFAAHVHV-GPGEYFLTKGKMDVRGGKAAG---GDTAIAPGYGYESANARHDKT-EFPVASEFYMS  115 (144)
T ss_dssp             TTEEEEEEEECTTEEECCEEES-SCEEEEEEEEEEEETTCGGGT---SEEEESSEEEEECTTCEESCC-EEEEEEEEEEE
T ss_pred             CCcEEEEEEeCCCcCcCCCccc-cCEEEEEEEEEEEecCCCcCC---CceEeCCceeEcCCCCeEccc-cCCCCEEEEEE
Confidence            3778899999999999999995 679999999998765211111   257789999999999999742 23455666655


Q ss_pred             ee
Q 040384          170 FN  171 (224)
Q Consensus       170 ~~  171 (224)
                      +.
T Consensus       116 ~~  117 (144)
T d2o1qa1         116 FL  117 (144)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=3e-05  Score=58.96  Aligned_cols=62  Identities=21%  Similarity=0.253  Sum_probs=47.7

Q ss_pred             ccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEE-EecCCccEEE-EEEee
Q 040384          104 INPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQ-LNVGKENVLF-FPSFN  171 (224)
Q Consensus       104 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~-~N~G~~~a~~-~~~~~  171 (224)
                      +..||-|++ -+++||++|++.+.+   +++  +..+++||++++|+|..|.. ...++++..+ +..|+
T Consensus        30 ~~Rp~g~~~-Y~l~yv~~G~G~~~i---~~~--~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~F~   93 (161)
T d2arca_          30 IDRPLGMKG-YILNLTIRGQGVVKN---QGR--EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFR   93 (161)
T ss_dssp             EEETTCCSS-EEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEEC
T ss_pred             EECCCCCCC-EEEEEEEEeEEEEEE---CCE--EEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEEEe
Confidence            346888865 799999999999876   455  79999999999999999964 4455566543 34565

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=9e-05  Score=51.87  Aligned_cols=55  Identities=24%  Similarity=0.233  Sum_probs=40.6

Q ss_pred             EEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384           97 VDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN  158 (224)
Q Consensus        97 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N  158 (224)
                      ....||.. +.+  -..+|++||++|++++.  +++|+  ..++++||.+++|+|..-.+..
T Consensus        23 W~~~pg~f-~~~--y~~~E~~~ileG~v~i~--~~~G~--~~~~~aGD~~~~p~G~~~~W~v   77 (88)
T d1o5ua_          23 WEKEVSEF-DWY--YDTNETCYILEGKVEVT--TEDGK--KYVIEKGDLVTFPKGLRCRWKV   77 (88)
T ss_dssp             EEECSEEE-EEE--CSSCEEEEEEEEEEEEE--ETTCC--EEEEETTCEEEECTTCEEEEEE
T ss_pred             EeecCcEE-EEE--cCccEEEEEEEeEEEEE--cCCCC--EEEEeCCCEEEECCCCEEEEEE
Confidence            44566543 234  35789999999999985  45665  4689999999999999855543

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=97.46  E-value=0.001  Score=52.31  Aligned_cols=83  Identities=12%  Similarity=0.038  Sum_probs=66.2

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeC--CC-----eEEEEEECCCCEEEecCC-CeeEEEecC-C
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITT--DN-----VFYSKVVTAGMLFLIPRG-LVHFQLNVG-K  161 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~--~~-----~~~~~~l~~GDv~vvP~G-~~H~~~N~G-~  161 (224)
                      ++.+..+...||...++|=|+++.-++.|++|+++......  ++     ......+++||+..+... -+|.+.|.+ +
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~~  144 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  144 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCCC
Confidence            47888899999999999999988999999999999887642  11     234688999999988654 599999998 4


Q ss_pred             ccEEEEEEeeCC
Q 040384          162 ENVLFFPSFNSQ  173 (224)
Q Consensus       162 ~~a~~~~~~~s~  173 (224)
                      ++++.+=++..+
T Consensus       145 ~~avsLHvYspP  156 (186)
T d3elna1         145 EPAVSLHLYSPP  156 (186)
T ss_dssp             CCEEEEEEEESC
T ss_pred             CCeEEEEEeCCC
Confidence            677766666543

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=97.19  E-value=0.0013  Score=51.39  Aligned_cols=78  Identities=17%  Similarity=0.263  Sum_probs=57.6

Q ss_pred             eCCcccCceecCC---CCceEEEEeCeEEEEEEeCC------CeEEEEEEC--CCCEEEecCCCeeEEEecCCccEEEEE
Q 040384          100 AVGGINPPHLHPR---SSESSIVIRGTVLVGIITTD------NVFYSKVVT--AGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       100 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~--~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .+|-++.+|+|..   -..+++|++|++..-++|..      ++.....|.  .+..++||+|.+|..+...++....+.
T Consensus        53 ~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~~i~Y~  132 (176)
T d1wlta1          53 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFI  132 (176)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEE
T ss_pred             chheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccceEEEe
Confidence            6888999999932   23599999999999999853      466677774  566999999999999998765444443


Q ss_pred             EeeCCCCcc
Q 040384          169 SFNSQLPGT  177 (224)
Q Consensus       169 ~~~s~~pg~  177 (224)
                      .-+.-+|+.
T Consensus       133 ~~~~y~p~~  141 (176)
T d1wlta1         133 THNEYSPPH  141 (176)
T ss_dssp             ESSCCCGGG
T ss_pred             cCCccChhh
Confidence            323345554

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.17  E-value=0.0017  Score=51.02  Aligned_cols=78  Identities=13%  Similarity=0.161  Sum_probs=58.5

Q ss_pred             eCCcccCceecCC---CCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEEE
Q 040384          100 AVGGINPPHLHPR---SSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       100 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .+|-++..|+|..   -..+++|++|++..-++|-.      ++.....|.+  +..++||+|.+|.....+++....+.
T Consensus        55 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y~  134 (183)
T d1dzra_          55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYK  134 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             ccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEEe
Confidence            6899999999842   36899999999999999843      5777788855  56999999999999988765444443


Q ss_pred             EeeCCCCcc
Q 040384          169 SFNSQLPGT  177 (224)
Q Consensus       169 ~~~s~~pg~  177 (224)
                      .-+.-+|+.
T Consensus       135 ~~~~y~p~~  143 (183)
T d1dzra_         135 ATNYYSPSS  143 (183)
T ss_dssp             ESSCCCTTT
T ss_pred             CCcccCccC
Confidence            322234544

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.0019  Score=51.39  Aligned_cols=69  Identities=13%  Similarity=0.247  Sum_probs=54.9

Q ss_pred             eCCcccCceecC---CCCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEEE
Q 040384          100 AVGGINPPHLHP---RSSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       100 ~pgg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .+|-++.+|+|.   ....+++|++|++..-++|-.      |+.+...|.+  +..++||+|.+|.....++...+.+.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y~  133 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  133 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeecc
Confidence            688899999973   357899999999999998853      5777888866  45999999999999988765444343

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=97.12  E-value=0.0015  Score=51.54  Aligned_cols=80  Identities=15%  Similarity=0.096  Sum_probs=60.2

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCC--Ce-E---EEEEECCCCEEEe--cCCCeeEEEec-CC
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTD--NV-F---YSKVVTAGMLFLI--PRGLVHFQLNV-GK  161 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~--~~-~---~~~~l~~GDv~vv--P~G~~H~~~N~-G~  161 (224)
                      ++.+.-+...||...++|-|. ...++.|++|+....+....  +. +   ....+++||+..+  +.|.+|.+.|. ++
T Consensus        67 ~f~i~~i~W~pG~~tpiHdH~-~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~~~  145 (192)
T d2gm6a1          67 RFSIVSFVWGPGQRTPIHDHT-VWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  145 (192)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEecCCCCCCCCCCCC-CceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCCCC
Confidence            467788899999999999995 56888999999987776432  21 1   2468999999877  34679999997 55


Q ss_pred             ccEEEEEEee
Q 040384          162 ENVLFFPSFN  171 (224)
Q Consensus       162 ~~a~~~~~~~  171 (224)
                      ++++-+=++.
T Consensus       146 ~~avSLHvYg  155 (192)
T d2gm6a1         146 RVSISIHVYG  155 (192)
T ss_dssp             SCEEEEEEES
T ss_pred             ccEEEEEECC
Confidence            6665444543

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.07  E-value=0.002  Score=50.59  Aligned_cols=79  Identities=14%  Similarity=0.171  Sum_probs=59.0

Q ss_pred             eCCcccCceec--CCCCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEEEE
Q 040384          100 AVGGINPPHLH--PRSSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       100 ~pgg~~~pH~H--p~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .+|-++..|++  +....+++|++|++..-++|-.      ++.....|..  +..++||+|.+|..+..+++..+.+..
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~Y~~  136 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKT  136 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEEecc
Confidence            57889999987  2346889999999999999843      5777888866  568999999999999887655444444


Q ss_pred             eeCCCCcce
Q 040384          170 FNSQLPGTQ  178 (224)
Q Consensus       170 ~~s~~pg~~  178 (224)
                      -+.-+|+..
T Consensus       137 s~~y~~~~e  145 (184)
T d2ixha1         137 TDFWAPEHE  145 (184)
T ss_dssp             SSCCCGGGE
T ss_pred             ccccCcccc
Confidence            333355543

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.00  E-value=0.0036  Score=48.50  Aligned_cols=58  Identities=19%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             eCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEec
Q 040384          100 AVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNV  159 (224)
Q Consensus       100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~  159 (224)
                      .|+.-.--|+++ ..|++|=++|...+.+++ +|+.....+++||+|.+|+.+.|.-+-.
T Consensus        43 GPN~R~DyH~~~-~eE~FyQlkG~m~Lkv~e-~g~~~di~I~EGe~fLLP~~vpHSPqR~  100 (174)
T d1yfua1          43 GPNHRTDYHDDP-LEEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLLPPHVRHSPQRP  100 (174)
T ss_dssp             SCBCCCCEEECS-SCEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEECTTCCEEEEBC
T ss_pred             CCcccCccccCc-chhheeeeccceEEEEEe-CCceEEEEcCCCcEEEeCCCCCCCcccC
Confidence            344444458885 589999999999999987 6788889999999999999999998764

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=97.00  E-value=0.0031  Score=50.21  Aligned_cols=78  Identities=14%  Similarity=0.168  Sum_probs=57.3

Q ss_pred             eCCcccCceecCC---CCceEEEEeCeEEEEEEeCC------CeEEEEEEC--CCCEEEecCCCeeEEEecCCccEEEEE
Q 040384          100 AVGGINPPHLHPR---SSESSIVIRGTVLVGIITTD------NVFYSKVVT--AGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       100 ~pgg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~--~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .+|-++.+|+|..   ...+++|++|++...++|-.      ++.....|.  .+..+.||+|.+|......+...+.+.
T Consensus        55 ~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~Y~  134 (202)
T d1oi6a_          55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYM  134 (202)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEEE
T ss_pred             hhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccceeEEe
Confidence            6888999999843   45899999999999999743      566667776  456899999999999988765444443


Q ss_pred             EeeCCCCcc
Q 040384          169 SFNSQLPGT  177 (224)
Q Consensus       169 ~~~s~~pg~  177 (224)
                      .-+.-+|+.
T Consensus       135 ~s~~y~p~~  143 (202)
T d1oi6a_         135 LSRSYVTQD  143 (202)
T ss_dssp             ESSCCCGGG
T ss_pred             cCCccChhc
Confidence            322234443

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.96  E-value=0.0029  Score=51.97  Aligned_cols=61  Identities=21%  Similarity=0.245  Sum_probs=46.9

Q ss_pred             eCCcccCceecCCCCceEEEEeCeEEEEEEeCCC----------------------------------eEEEEEECCCCE
Q 040384          100 AVGGINPPHLHPRSSESSIVIRGTVLVGIITTDN----------------------------------VFYSKVVTAGML  145 (224)
Q Consensus       100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~----------------------------------~~~~~~l~~GDv  145 (224)
                      .+|+..++|+.+. .-++..++|+=+..+..+..                                  +.+..+|++||+
T Consensus       130 ~~g~~~~~H~D~~-d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGDv  208 (319)
T d1vrba1         130 KNGGGFKAHFDAY-TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTM  208 (319)
T ss_dssp             CSSCCCCSEECSS-EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCE
T ss_pred             CCCCCCccccCCC-ceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCCE
Confidence            4455688999854 56777899998887775421                                  124568999999


Q ss_pred             EEecCCCeeEEEecCC
Q 040384          146 FLIPRGLVHFQLNVGK  161 (224)
Q Consensus       146 ~vvP~G~~H~~~N~G~  161 (224)
                      +++|+|+.|+..|.++
T Consensus       209 LYiP~gw~H~v~s~~~  224 (319)
T d1vrba1         209 LYLPRGLWHSTKSDQA  224 (319)
T ss_dssp             EEECTTCEEEEECSSC
T ss_pred             EEeCCCceEEeEecCC
Confidence            9999999999998764

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.91  E-value=0.0034  Score=49.11  Aligned_cols=78  Identities=18%  Similarity=0.252  Sum_probs=57.6

Q ss_pred             eCCcccCceecCC--CCceEEEEeCeEEEEEEeCC------CeEEEEEECC--CCEEEecCCCeeEEEecCCccEEEEEE
Q 040384          100 AVGGINPPHLHPR--SSESSIVIRGTVLVGIITTD------NVFYSKVVTA--GMLFLIPRGLVHFQLNVGKENVLFFPS  169 (224)
Q Consensus       100 ~pgg~~~pH~Hp~--a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l~~--GDv~vvP~G~~H~~~N~G~~~a~~~~~  169 (224)
                      .+|-++..|+|..  -..+++|++|++..-++|-.      |+.....|.+  +..++||+|.+|.....+++..+.+..
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~  133 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKC  133 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCceEEEEec
Confidence            6888999999843  35799999999999999853      5667777755  568999999999999887654334433


Q ss_pred             eeCCCCcc
Q 040384          170 FNSQLPGT  177 (224)
Q Consensus       170 ~~s~~pg~  177 (224)
                      -+.-+|+.
T Consensus       134 s~~y~p~~  141 (183)
T d1ep0a_         134 TELYHPEY  141 (183)
T ss_dssp             SSCCCGGG
T ss_pred             cCCcCccc
Confidence            33335554

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=96.90  E-value=0.0085  Score=47.05  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=57.2

Q ss_pred             eCCcccCceecC---CCCceEEEEeCeEEEEEEeCC------CeEEEEEE--CCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384          100 AVGGINPPHLHP---RSSESSIVIRGTVLVGIITTD------NVFYSKVV--TAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       100 ~pgg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------~~~~~~~l--~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .+|-++..|+|.   .-.++++|++|++...++|-.      ++.+...|  +.+..++||+|.+|.....++...+.+.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~  133 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  133 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEEe
Confidence            588889999863   245899999999999999854      34444555  7889999999999999888765544443


Q ss_pred             EeeCCCCcc
Q 040384          169 SFNSQLPGT  177 (224)
Q Consensus       169 ~~~s~~pg~  177 (224)
                      .-+.-+|+.
T Consensus       134 ~s~~y~p~~  142 (190)
T d2c0za1         134 SSGTYDPAT  142 (190)
T ss_dssp             ESSCCCTTT
T ss_pred             cCCccCccc
Confidence            333334543

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.0054  Score=47.52  Aligned_cols=67  Identities=15%  Similarity=0.306  Sum_probs=52.3

Q ss_pred             eCCcccCceecCCCCceEEEEeCeEEEEEEeCC---CeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384          100 AVGGINPPHLHPRSSESSIVIRGTVLVGIITTD---NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus       100 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~---~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      .|+.-.--|+.+ ..|++|=++|...+-+++.+   ++.....+++||+|..|+.+.|+-+-..++-..++
T Consensus        41 GPN~R~DyH~~~-~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~tiGLVI  110 (175)
T d1zvfa1          41 GPNERTDYHINP-TPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVGIVV  110 (175)
T ss_dssp             SSBCCSCEEECS-SCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEE
T ss_pred             CCCcccccccCc-chhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCCceEEEE
Confidence            455555568885 58999999999999999753   57778899999999999999999766544433333

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=96.46  E-value=0.0042  Score=49.09  Aligned_cols=68  Identities=18%  Similarity=0.176  Sum_probs=54.2

Q ss_pred             eCCcccCceecCCCCceEEEE-eCeEEEEEEeCC-----CeEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384          100 AVGGINPPHLHPRSSESSIVI-RGTVLVGIITTD-----NVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       100 ~pgg~~~pH~Hp~a~Ei~yVl-~G~~~v~~v~~~-----~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      .+|-++.+|+|+. ..+++++ .|++..-++|-.     ++.+...|..+..++||+|.+|.....+++..+.+.
T Consensus        65 ~kgvlRGlH~q~~-~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~  138 (194)
T d1nxma_          65 RKNVLRGLHAEPW-DKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYL  138 (194)
T ss_dssp             ETTBEEEEEECSS-CEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             eeeEEEEEEeccc-hhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEe
Confidence            5788999999975 5777766 599988888642     577788999999999999999999988765444443

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.023  Score=49.83  Aligned_cols=87  Identities=10%  Similarity=0.025  Sum_probs=55.5

Q ss_pred             EeecccCCCCccccEEEEEEEEeCCcc-cCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEE
Q 040384           78 EGNVHEFPGVNTQGISTNRVDLAVGGI-NPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQ  156 (224)
Q Consensus        78 ~~~~~~~P~l~~~gis~~rv~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~  156 (224)
                      .+....-|..+. |+++...... -.| ..--+.-+++|++||.+|++++.-  +-|+   ..+++||.+|||+|+.+.+
T Consensus       117 t~~g~Gd~~~~~-G~aihiy~~n-~sM~~~~f~NADGDeLi~~~~Gsg~l~T--efG~---L~v~pGDyvVIPRG~~frv  189 (439)
T d1eyba_         117 TLCGAGDIKSNN-GLAIHIFLCN-TSMENRCFYNSDGDFLIVPQKGNLLIYT--EFGK---MLVQPNEICVIQRGMRFSI  189 (439)
T ss_dssp             EEEEESCGGGTC-CEEEEEEEEC-SCCCSEEEEESSEEEEEEEEESCEEEEE--TTEE---EEECTTEEEEECTTCCEEE
T ss_pred             eecccCCccccc-CcEEEEEecC-CCCccceeEcCCCCEEEEEEeCcEEEEE--eeeE---EEecCCcEEEecCceEEEE
Confidence            333344444442 5555433333 334 334467789999999999998764  3354   7999999999999999887


Q ss_pred             EecCCccEEEEEEee
Q 040384          157 LNVGKENVLFFPSFN  171 (224)
Q Consensus       157 ~N~G~~~a~~~~~~~  171 (224)
                      .-.+.....++..+.
T Consensus       190 ~~~~~~r~yiiE~~g  204 (439)
T d1eyba_         190 DVFEETRGYILEVYG  204 (439)
T ss_dssp             ECSSSEEEEEEEEES
T ss_pred             ecCCCceEEEEeecC
Confidence            644433334444443

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.016  Score=48.53  Aligned_cols=67  Identities=22%  Similarity=0.253  Sum_probs=49.7

Q ss_pred             EEEEEeCCcc-cCceecCCCCceEEEEeCeEEEEEEeCCC-----------------------------------eEEEE
Q 040384           95 NRVDLAVGGI-NPPHLHPRSSESSIVIRGTVLVGIITTDN-----------------------------------VFYSK  138 (224)
Q Consensus        95 ~rv~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~-----------------------------------~~~~~  138 (224)
                      ..+-+.++|. .+.|+-+. .-+..+++|+=++.+..+..                                   +.+..
T Consensus       171 ~~lwiG~~gs~t~~H~D~~-~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~  249 (335)
T d1h2ka_         171 NLLLIGMEGNVTPAHYDEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYET  249 (335)
T ss_dssp             CEEEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEE
T ss_pred             eEEEEcCCCCCCccccccc-cceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEE
Confidence            3456666554 55687643 56888999998888875420                                   23567


Q ss_pred             EECCCCEEEecCCCeeEEEecCCc
Q 040384          139 VVTAGMLFLIPRGLVHFQLNVGKE  162 (224)
Q Consensus       139 ~l~~GDv~vvP~G~~H~~~N~G~~  162 (224)
                      +|++||++++|+|..|.+.|.++.
T Consensus       250 ~l~pGd~L~iP~~w~H~V~~~~~~  273 (335)
T d1h2ka_         250 VVGPGDVLYIPMYWWHHIESLLNG  273 (335)
T ss_dssp             EECTTCEEEECTTCEEEEEECTTS
T ss_pred             EECCCCEEeeCCCCeEEEEEcCCC
Confidence            899999999999999999997553

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.033  Score=44.33  Aligned_cols=70  Identities=21%  Similarity=0.214  Sum_probs=52.5

Q ss_pred             EEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC--CCeeEEEecCC-ccEEE
Q 040384           93 STNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR--GLVHFQLNVGK-ENVLF  166 (224)
Q Consensus        93 s~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~--G~~H~~~N~G~-~~a~~  166 (224)
                      -+..-.+.||+-.++|-|.+-.-+.||++|+++-.  |+-|.  ..++++||+-.+-+  |..|.-.|..+ +++.+
T Consensus        42 v~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~H~--DS~G~--~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~  114 (231)
T d1tq5a1          42 VINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DSMGN--KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHL  114 (231)
T ss_dssp             EEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ESSSC--EEEEETTCEEEEECTTCEEEEEECCCSSCCEEE
T ss_pred             EEecceecCCCCCCCCCcCCeeEEEEEEeEEEEEC--CCCCC--cEEECCCcEEEEecCCcEEEEeeccccCCCeEE
Confidence            34467899999999999966555569999987653  55554  58999999988875  67899988653 34443

>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein SO0799
species: Shewanella oneidensis [TaxId: 70863]

Probab=94.44  E-value=0.67  Score=34.70  Aligned_cols=132  Identities=17%  Similarity=0.216  Sum_probs=80.9

Q ss_pred             CCCCceEEEeecccCC-CCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCe-EEEEEEeCCCeEEEEEE----CCC
Q 040384           70 NAFGRAVTEGNVHEFP-GVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGT-VLVGIITTDNVFYSKVV----TAG  143 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P-~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~-~~v~~v~~~~~~~~~~l----~~G  143 (224)
                      .+.||..++....... .-...-.+....-|.++.....|.- +++|+.+-..|. +++.+++++|+..+..|    ..|
T Consensus        16 HPEGG~fret~rs~~~~~~~R~~~T~IY~LL~~~~~S~~Hrv-~sdEiw~~~~G~pL~l~~~~~~g~~~~~~lG~d~~~g   94 (158)
T d1yuda1          16 HVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG   94 (158)
T ss_dssp             CTTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CCCCceEEEEEeCCCCCCCCCcceEEEEEEecCCCCCceEEe-cCCeEEEEecCCCEEEEEecCCCCeEEeeeccCcCcC
Confidence            4678888877654322 1122235666677788876655555 589999999987 78888888887666654    467


Q ss_pred             CE--EEecCCCeeEEEecCCccEEEEEEeeCCCCcceehhhhhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 040384          144 ML--FLIPRGLVHFQLNVGKENVLFFPSFNSQLPGTQFVHSSLFNTTPPIPNEVLTKTFLVGDEVINAIK  211 (224)
Q Consensus       144 Dv--~vvP~G~~H~~~N~G~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~~p~evla~af~v~~~~v~~l~  211 (224)
                      +.  ++||+|......- ..+.-.+++..  -.||+..-.   |.-   .+.+-|.+.|---.+.|++|-
T Consensus        95 e~~q~vVp~g~w~~a~~-~~g~~sLvsct--VaPGFdf~D---fel---~~~~~L~~~~P~~~~~I~~lt  155 (158)
T d1yuda1          95 ERPQFLVPKGCIFGSAM-NQDGFSLVGCM--VSPGFTFDD---FEL---FSQEALLAMYPQHKAVVQKLS  155 (158)
T ss_dssp             EESCEEECTTCEEEEEE-SSSSEEEEEEE--ESSCCCGGG---CCB---CBHHHHHHSCCTTHHHHTTSC
T ss_pred             ceeEEEEcCCCEEEEEE-cCCCcEEEEEE--EcCCccchh---ccc---cCHHHHHHHCchhHHHHHHHc
Confidence            76  8999997654432 22233333332  235554332   221   356666666766666666653

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.07  E-value=0.44  Score=35.10  Aligned_cols=89  Identities=12%  Similarity=0.080  Sum_probs=63.1

Q ss_pred             CCCCceEEEeecccCCCCccccEEEEEEEEeCCcccCceec--CCCCceEEEEeCe-EEEEEEeCCCeEEEEE----ECC
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQGISTNRVDLAVGGINPPHLH--PRSSESSIVIRGT-VLVGIITTDNVFYSKV----VTA  142 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~gis~~rv~l~pgg~~~pH~H--p~a~Ei~yVl~G~-~~v~~v~~~~~~~~~~----l~~  142 (224)
                      .+.||..++....+..+-+. -++....-|.++...  |||  .+++|+.+-..|. +++.++.++++.....    +.+
T Consensus        16 HPEGG~f~et~rs~~~~~R~-~~T~IYyLL~~~~~s--~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~~~~~lG~~~~~   92 (140)
T d1znpa1          16 HPEGGFYHQTFRDKAGGERG-HSTAIYYLLEKGVRS--HWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILE   92 (140)
T ss_dssp             CTTSSEEEEEEECSSSTTTC-SCEEEEEEEESSCCE--EEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTT
T ss_pred             CCCCceEEEEEECCCCCCCc-ceEEEEEEcCCCCCC--ccccccCCCeEEEEcCCceEEEEEecCCCCEEEEEecCCccc
Confidence            46888888887665544433 356666667888765  566  3467999999987 7888887777655555    456


Q ss_pred             CC--EEEecCCCeeEEEecCC
Q 040384          143 GM--LFLIPRGLVHFQLNVGK  161 (224)
Q Consensus       143 GD--v~vvP~G~~H~~~N~G~  161 (224)
                      |+  .++||+|..+..+..|+
T Consensus        93 ge~~q~vVp~g~W~aa~~~g~  113 (140)
T d1znpa1          93 GERPQVIVPANCWQSAESLGD  113 (140)
T ss_dssp             TEESEEEECTTCEEEEEESSS
T ss_pred             CCceeEEECCCeEEeeeECCC
Confidence            76  78899999988876654

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.21  Score=40.71  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=60.7

Q ss_pred             CCCCceEEEeecccCCCCcccc--EEEEEEEEeCCcccCceecCCCCceEEEEeCe-EEEEEEeCCCeEEEEEECCCCEE
Q 040384           70 NAFGRAVTEGNVHEFPGVNTQG--ISTNRVDLAVGGINPPHLHPRSSESSIVIRGT-VLVGIITTDNVFYSKVVTAGMLF  146 (224)
Q Consensus        70 ~~~g~~~~~~~~~~~P~l~~~g--is~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~-~~v~~v~~~~~~~~~~l~~GDv~  146 (224)
                      ...|.++..+..  .|.+...|  +-+....+.+++-.++|=|.+-.-+.||++|. ++-  -|+-|+  ..++++||+-
T Consensus        16 ~g~G~~v~R~~~--~~~~~~~~Pf~~~d~~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H--~Ds~G~--~~~i~~G~vq   89 (288)
T d1j1la_          16 EGVGARVRRSIG--RPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAH--EDFCGH--TGKMNPGDLQ   89 (288)
T ss_dssp             ETBTEEEEECTT--STTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEE--EETTSC--EEEECTTCEE
T ss_pred             ccCCEEEEEeCC--CCCccccCceEEeEcCcCCCCCCCCCCCcCCeEEEEEEEeCCeEEE--ecCCCC--eeEecCCCEE
Confidence            344555555432  24444444  44456677787778999995544445889985 433  355454  5899999998


Q ss_pred             EecC--CCeeEEEecCCccEEE
Q 040384          147 LIPR--GLVHFQLNVGKENVLF  166 (224)
Q Consensus       147 vvP~--G~~H~~~N~G~~~a~~  166 (224)
                      ..-+  |..|.-.|..++++..
T Consensus        90 ~mtAG~Gi~HsE~~~~~~~~~~  111 (288)
T d1j1la_          90 WMTAGRGILHAEMPCSEEPAHG  111 (288)
T ss_dssp             EEECTTCEEEEEEECSSSCEEE
T ss_pred             EEecccceEeccccccccccee
Confidence            8876  6799999988877654

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=92.74  E-value=0.16  Score=44.27  Aligned_cols=68  Identities=12%  Similarity=0.099  Sum_probs=46.3

Q ss_pred             cEEEEEEEEeCCcccCceec-CCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecC
Q 040384           91 GISTNRVDLAVGGINPPHLH-PRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVG  160 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G  160 (224)
                      .+++.++++.++.....-.+ .+..+|++|++|++++..-..++.  ...|++||++++|+|..-.+...+
T Consensus       356 ~F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~~~~~~~--~~~l~~G~~~fIpa~~~~~i~~~~  424 (440)
T d1pmia_         356 EFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDST--KQKIDTGYVFFVAPGSSIELTADS  424 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEETTCGGG--CEEEETTCEEEECTTCCEEEEECS
T ss_pred             ceEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEecCCCcc--EEEeCCceEEEEcCCceEEEEeec
Confidence            36777888877543222112 145799999999998875221122  479999999999999765555555

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.39  Score=38.97  Aligned_cols=82  Identities=12%  Similarity=0.029  Sum_probs=59.6

Q ss_pred             CCCccccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccE
Q 040384           85 PGVNTQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENV  164 (224)
Q Consensus        85 P~l~~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a  164 (224)
                      |......+.+..+.+++|+....-......-++||++|++.++-  .+.   ...++++++.++-.|..-.+.+.+++++
T Consensus       160 pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g--~~~---~~~l~~~~~~~l~~gd~~~i~~~~~~~a  234 (288)
T d1j1la_         160 KVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGP--DDA---QQKIEPHHTAVLGEGDSVQVENKDPKRS  234 (288)
T ss_dssp             CCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESC--TTS---CEEECTTEEEEECSCSEEEEECCSSSCE
T ss_pred             ccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecC--ccc---ceeecCceEEEEcCCCeEEEEeCCCCCC
Confidence            55555688999999999998654444445678999999998752  111   3578999999988887656777777788


Q ss_pred             EEEEEee
Q 040384          165 LFFPSFN  171 (224)
Q Consensus       165 ~~~~~~~  171 (224)
                      .++.+-.
T Consensus       235 ~~LLl~G  241 (288)
T d1j1la_         235 HFVLIAG  241 (288)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            7665443

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=90.71  E-value=0.42  Score=39.42  Aligned_cols=59  Identities=19%  Similarity=0.223  Sum_probs=41.7

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL  157 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~  157 (224)
                      -+++.++++......   ...+...+++|++|++++..   ++.  +..|++||.+++|++.-.+..
T Consensus       246 ~F~~~~~~~~~~~~~---~~~~~~~il~vi~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i  304 (315)
T d1qwra_         246 YFSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKY---EDK--TCPLKKGDHFILPAQMPDFTI  304 (315)
T ss_dssp             SCEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCCCEEE
T ss_pred             cEEEEEEEecCcEEe---ccCCCcEEEEEEeCeEEEEE---CCE--EEEEecCcEEEEECCCCCEEE
Confidence            367777777632221   12245689999999998764   343  578999999999998876654

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=89.95  E-value=0.97  Score=30.88  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=46.2

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEe
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLN  158 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N  158 (224)
                      |-....-.|.||-   -+....+.|++-|++|++++.+-   |....+++++|+.|-+|.+.-.-++-
T Consensus        21 g~~kTlGVm~pGe---Y~F~T~~~E~MeivsG~l~V~lp---g~~ew~~~~~G~sF~Vpans~F~ikv   82 (93)
T d2oyza1          21 GQDVSVGVMLPGE---YTFGTQAPERMTVVKGALVVKRV---GEADWTTYSSGESFDVEGNSSFELQV   82 (93)
T ss_dssp             TEEEEEEEECSEE---EEEEESSCEEEEEEESEEEEEET---TCSSCEEEETTCEEEECSSEEEEEEE
T ss_pred             CCeeEEEEEeccE---EEEcCCCCEEEEEEeeEEEEECC---CCcccEEeCCCCeEEECCCCEEEEEE
Confidence            3344445566774   45666789999999999999873   33347899999999999987766654

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=89.93  E-value=0.47  Score=32.74  Aligned_cols=51  Identities=20%  Similarity=0.223  Sum_probs=37.0

Q ss_pred             eEEEEeCeEEE-EEEeCCC--eEEEEEECCCCEEEecCCCeeEEEecCCccEEEEE
Q 040384          116 SSIVIRGTVLV-GIITTDN--VFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFFP  168 (224)
Q Consensus       116 i~yVl~G~~~v-~~v~~~~--~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~~  168 (224)
                      -+-|++|+++. ++.+.++  ......+++|+.-++|+..+|.+. . .+++.+..
T Consensus        37 ~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve-~-sdD~~f~v   90 (96)
T d3dl3a1          37 QICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIE-L-SDDAQFNI   90 (96)
T ss_dssp             EEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEE-E-CTTCEEEE
T ss_pred             EEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEE-e-CCCeEEEE
Confidence            45799999986 5555433  123578899999999999999998 4 34555544

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=89.64  E-value=0.29  Score=40.33  Aligned_cols=71  Identities=13%  Similarity=0.125  Sum_probs=45.7

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEE--eC-------CCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGII--TT-------DNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v--~~-------~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      ...+.++.+.|||.+.||.=.  .+...-..+..++.+-  ++       +++  ...+++|+++++--+..|+..|.|+
T Consensus        90 ~~r~~rirL~pGg~I~pH~D~--~~~~~~~~~~~RiHIPL~Tn~~~~f~v~~~--~~~m~~Ge~w~~D~~~~H~v~N~sd  165 (290)
T d1e5ra_          90 HLQMARSRNLKNAIVIPHRDF--VELDREVDRYFRTFMVLEDSPLAFHSNEDT--VIHMRPGEIWFLDAATVHSAVNFSE  165 (290)
T ss_dssp             SEEEEEEEEEESEEEEEECCC----------CBCCEEEECSCCTTEEEEETTE--EECCCTTEEEECCTTSCEEEEESSS
T ss_pred             eeeeeeeeecCCcEecCCcCC--ccccccCCceEEEEEEeecCCceEEEECCE--EEECCCCeEEEEcCCCeEEEECCCC
Confidence            467888889999999998532  2211111222222221  11       233  5789999999999999999999998


Q ss_pred             ccEE
Q 040384          162 ENVL  165 (224)
Q Consensus       162 ~~a~  165 (224)
                      ++-+
T Consensus       166 ~dRI  169 (290)
T d1e5ra_         166 ISRQ  169 (290)
T ss_dssp             SCCC
T ss_pred             CceE
Confidence            7643

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.09  E-value=0.46  Score=39.15  Aligned_cols=58  Identities=19%  Similarity=0.379  Sum_probs=41.9

Q ss_pred             EeCCcccCceecCC-------------CCceEEEEe----CeEEEEEEeCC----------C----eEEEEEECCCCEEE
Q 040384           99 LAVGGINPPHLHPR-------------SSESSIVIR----GTVLVGIITTD----------N----VFYSKVVTAGMLFL  147 (224)
Q Consensus        99 l~pgg~~~pH~Hp~-------------a~Ei~yVl~----G~~~v~~v~~~----------~----~~~~~~l~~GDv~v  147 (224)
                      |..+.-.+.|-||+             -+|..|++.    .++..|+-..+          +    -+....+++||.++
T Consensus        86 Lda~~~LSiQvHP~~~~A~~~~~~~~gK~E~wyil~a~~~a~~~~G~~~~~~~e~~~~i~~~~~~~lln~~~l~~Gd~~~  165 (315)
T d1qwra_          86 LDVKEDTSIKVHPDDYYAGENEEGELGKTECWYIIDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYY  165 (315)
T ss_dssp             EEESSCCCEEECCCHHHHHHHTTTCCCCCEEEEEEEECTTCEEEEEECCSSHHHHHHHHHTTCHHHHEEEEECCTTCEEE
T ss_pred             eccCCCcccccCCCHHHHHhhccccCCCCceEEEEEcCCCcEEEEcCCCCCHHHHHHHHHcCCHHHhCcEEEcccCCEEE
Confidence            34455566677774             589999986    56777764322          0    13468999999999


Q ss_pred             ecCCCeeEE
Q 040384          148 IPRGLVHFQ  156 (224)
Q Consensus       148 vP~G~~H~~  156 (224)
                      +|+|.+|..
T Consensus       166 ipaG~~HA~  174 (315)
T d1qwra_         166 VPSGTLHAL  174 (315)
T ss_dssp             ECTTCCEEE
T ss_pred             eCCCCeeEe
Confidence            999999996

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=89.03  E-value=1.2  Score=31.36  Aligned_cols=62  Identities=21%  Similarity=0.213  Sum_probs=41.9

Q ss_pred             CCcccCcee--cCCC--CceEEEEeCeEEE-EEEeCCC--eEEEEEECCCCEEEecCCCeeEEEecCCc
Q 040384          101 VGGINPPHL--HPRS--SESSIVIRGTVLV-GIITTDN--VFYSKVVTAGMLFLIPRGLVHFQLNVGKE  162 (224)
Q Consensus       101 pgg~~~pH~--Hp~a--~Ei~yVl~G~~~v-~~v~~~~--~~~~~~l~~GDv~vvP~G~~H~~~N~G~~  162 (224)
                      |-++...|.  ...+  -.-+-|++|+++. ++.++..  -.....+++|+.-++|+..+|.+.-.++.
T Consensus        23 P~~ll~~H~~~nTK~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD   91 (109)
T d3bb6a1          23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDD   91 (109)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTT
T ss_pred             hHHHHhhccCCCcCCcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCC
Confidence            445556673  2333  3445799999986 4544322  12356799999999999999999876653

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=87.58  E-value=0.84  Score=35.62  Aligned_cols=68  Identities=10%  Similarity=-0.020  Sum_probs=44.7

Q ss_pred             cccEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCCccEEEE
Q 040384           89 TQGISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGKENVLFF  167 (224)
Q Consensus        89 ~~gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~~~a~~~  167 (224)
                      ...+.+..+.+.+|+....-..+...-++||++|++++.     +    ..|.+||.+.+-.+-.-.+...  +++.++
T Consensus       157 ~~~~~l~~~~l~~g~~~~~~l~~~~~~~lyvi~G~l~i~-----g----~~l~~gd~~~l~~~~~l~i~A~--~~a~~L  224 (231)
T d1tq5a1         157 HQDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTIN-----G----VKASTSDGLAIWDEQAISIHAD--SDSEVL  224 (231)
T ss_dssp             SSSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEET-----T----EEEETTCEEEEESCSCEEEEES--SSEEEE
T ss_pred             ccccEEEEEEecCCceEEEcccCCccEEEEEEeeEEEEC-----C----EEccCCCeEEECCCCeEEEEEC--CCCEEE
Confidence            346788899999988654333333345899999998863     4    3689999887765544333332  345444

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.38  E-value=2.5  Score=29.35  Aligned_cols=53  Identities=15%  Similarity=0.126  Sum_probs=36.8

Q ss_pred             EEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecC
Q 040384           97 VDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPR  150 (224)
Q Consensus        97 v~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~  150 (224)
                      -.+++|..+ .+--....++.+|++|.+++...+++++.....+.+||++-.+.
T Consensus        25 ~~~~kG~~i-~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~~   77 (132)
T d1ft9a2          25 KIHAKGSLV-CTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHS   77 (132)
T ss_dssp             EEECTTCEE-ECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESCS
T ss_pred             EEecCCcEE-ECCCCCCCEEEEEEeCeEeeeccccccceeeccccccccccccc
Confidence            445555554 22233467899999999999877754455667889999885543

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=84.36  E-value=4  Score=32.97  Aligned_cols=77  Identities=19%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             ccccEEEEEEEEeCCcc---cCceecCCCCceEEEE---eCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEEecCC
Q 040384           88 NTQGISTNRVDLAVGGI---NPPHLHPRSSESSIVI---RGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQLNVGK  161 (224)
Q Consensus        88 ~~~gis~~rv~l~pgg~---~~pH~Hp~a~Ei~yVl---~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~G~  161 (224)
                      +.-.+-+....+.|||.   .|||.|.+..|..|--   ++...+.+..+.+......++-+|.++.|.=.+|.-.  |.
T Consensus       173 ~s~qLlmG~tvl~PGg~WSSyPpHkHDRrmEeyyYF~l~~~~~Vfh~mGep~etrhivv~neqaVisP~wsih~g~--gt  250 (277)
T d1xrua1         173 ETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFHMMGQPQETRHIVMHNEQAVISPSWSIHSGV--GT  250 (277)
T ss_dssp             CCSSCEEEEEEECTTCCEESCSEEECTTEEEEEEEESCCTTCCEEEEEEETTEEEEEEECSSEEEEECTTCEEEEE--ES
T ss_pred             ccceEEEEEEEEcCCCccCCCCCccCCCCcceEEEEEcCCCceEEEecCCCCceeEEEEECCcEEECCCCcccCCC--CC
Confidence            33346666778899984   6999998766666533   2333444544444545688999999999998899854  44


Q ss_pred             ccEEE
Q 040384          162 ENVLF  166 (224)
Q Consensus       162 ~~a~~  166 (224)
                      .+-.+
T Consensus       251 ~~y~f  255 (277)
T d1xrua1         251 KAYTF  255 (277)
T ss_dssp             SCCEE
T ss_pred             cceEE
Confidence            44333

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.19  E-value=2  Score=34.99  Aligned_cols=58  Identities=12%  Similarity=0.118  Sum_probs=41.7

Q ss_pred             cEEEEEEEEeCCcccCceecCCCCceEEEEeCeEEEEEEeCCCeEEEEEECCCCEEEecCCCeeEEE
Q 040384           91 GISTNRVDLAVGGINPPHLHPRSSESSIVIRGTVLVGIITTDNVFYSKVVTAGMLFLIPRGLVHFQL  157 (224)
Q Consensus        91 gis~~rv~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~~~~~~~~l~~GDv~vvP~G~~H~~~  157 (224)
                      -+++.++++........  . ...++++|++|++.+.    +++  +..|++||.+++|.+.-.+..
T Consensus       228 ~F~~~~~~~~~~~~~~~--~-~~~~il~~~~G~~~i~----~~~--~~~l~~G~s~~iPA~~~~~~i  285 (299)
T d1zx5a1         228 NFGLEVVDVTGTAEIKT--G-GVMNILYAAEGYFILR----GKE--TADLHRGYSCLVPASTDSFTV  285 (299)
T ss_dssp             SEEEEEEEEEEEEEEEC--C-SBCEEEEEEESCEEEE----SSS--EEEECTTCEEEECTTCCEEEE
T ss_pred             ceEEEEEEecCcEEecc--C-CceEEEEEeccEEEEe----CCC--EEEEcCCcEEEEecCCccEEE
Confidence            47777887764433222  2 4568999999998753    233  468999999999998877764