Citrus Sinensis ID: 040388
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 226 | ||||||
| 449476923 | 469 | PREDICTED: putative F-box/FBD/LRR-repeat | 0.955 | 0.460 | 0.325 | 6e-19 | |
| 449458247 | 469 | PREDICTED: putative F-box/FBD/LRR-repeat | 0.955 | 0.460 | 0.321 | 1e-18 | |
| 147833276 | 521 | hypothetical protein VITISV_011919 [Viti | 0.880 | 0.381 | 0.307 | 1e-16 | |
| 297743071 | 552 | unnamed protein product [Vitis vinifera] | 0.876 | 0.358 | 0.312 | 7e-15 | |
| 225442254 | 520 | PREDICTED: putative F-box protein At3g44 | 0.876 | 0.380 | 0.312 | 8e-15 | |
| 147810265 | 310 | hypothetical protein VITISV_027852 [Viti | 0.769 | 0.561 | 0.322 | 8e-12 | |
| 224121624 | 528 | predicted protein [Populus trichocarpa] | 0.867 | 0.371 | 0.308 | 6e-11 | |
| 357454743 | 761 | Agglutinin alpha chain [Medicago truncat | 0.867 | 0.257 | 0.259 | 7e-09 | |
| 255549680 | 514 | hypothetical protein RCOM_1485780 [Ricin | 0.734 | 0.322 | 0.310 | 5e-08 | |
| 297745118 | 231 | unnamed protein product [Vitis vinifera] | 0.557 | 0.545 | 0.291 | 3e-07 |
| >gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 5/221 (2%)
Query: 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIE 61
NLPQ F +S+ VL + CKL + L S++ + V+ +D+ ++ V+ CP I+
Sbjct: 124 NLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDETVKRLVSNCPFIQ 183
Query: 62 YMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAP 121
++ + C GL+ L L + N L + +N L +N+ + + + IN++
Sbjct: 184 HIKLDSCLGLRNLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQFQPCCINISS 243
Query: 122 CKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSRCLKKLFFKG--- 178
CK+L+ LKLS + I D+ + S+ LE L + C L S +ISS LKK G
Sbjct: 244 CKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLKKFILCGCES 303
Query: 179 --EFMLDTSNLSTFEYQGNLVSFSSNALALSQIILFLSTVI 217
+DT LS E+ G+++SFS NA ALSQ + LS I
Sbjct: 304 VTRVDIDTPCLSGLEFSGDVISFSLNAPALSQADIELSPRI 344
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 5/221 (2%)
Query: 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIE 61
NLPQ F +S+ VL + CKL + L S++ + V+ +D+ ++ V+ CP I+
Sbjct: 124 NLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDETVKRLVSNCPFIQ 183
Query: 62 YMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAP 121
++ + C GL+ L L + N L + +N L +N+ + + + IN++
Sbjct: 184 HIKLDSCLGLRSLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQFQPCCINISS 243
Query: 122 CKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSRCLKKLFFKG--- 178
CK+L+ LKLS + I D+ + S+ LE L + C L S +ISS LKK G
Sbjct: 244 CKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLKKFILCGCES 303
Query: 179 --EFMLDTSNLSTFEYQGNLVSFSSNALALSQIILFLSTVI 217
+D LS E+ G+++SFS NA ALSQ + LS I
Sbjct: 304 VTRVDIDAPCLSGLEFSGDVISFSLNAPALSQADIELSPRI 344
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 9/208 (4%)
Query: 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIE 61
LP F+ +I VL L+ C+LE + ++ L +LRKLC + D+Q I ++ CPLIE
Sbjct: 134 GLPAKIFSTTTITVLSLEQCRLE-ICGDIDLPALRKLCLRQIRCDEQAIRQLISSCPLIE 192
Query: 62 YMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAP 121
+ + CGGL+ L + L NL + + L+R+ I+ ++ + R D+ + P
Sbjct: 193 DLDIASCGGLQKLHVSGLANLHRLEVICCYNLRRIEIDAPSLQHLVYHCGRLPCDMVLTP 252
Query: 122 CKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSRCLKKLFFK---- 177
C+ L +L L +I ++ N S LE L ID +L+ +IS LK+L K
Sbjct: 253 CEFLRELILHDPHITNDFLQNLDSGFPNLERLEID-STRLQRIEISHHQLKRLELKLTPL 311
Query: 178 ---GEFMLDTSNLSTFEYQGNLVSFSSN 202
+ +D NL +F Y G + +S
Sbjct: 312 QKEAKLKIDAPNLQSFTYSGYRMPLTST 339
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 10/208 (4%)
Query: 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIE 61
LP F+ +I VL L+ C+LE + +V L +LRKLC + D+Q I ++ CPLIE
Sbjct: 166 GLPAKIFSTTTITVLSLEQCRLE-ICGDVDLPALRKLCLRKILCDEQAIRQLISSCPLIE 224
Query: 62 YMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRT-LSDINVA 120
+ + CG LK L + L NL + L+R+ I+ ++ +R+ L D+
Sbjct: 225 DLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSLQYFMYDHQRSLLCDVVWT 284
Query: 121 PCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSRCLKKLFFK--- 177
P + L +L L +I ++ N VS + LE L ID +L+ +IS LK+L +
Sbjct: 285 PGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDST-RLQRIEISHHQLKRLELRLSE 343
Query: 178 ----GEFMLDTSNLSTFEYQGNLVSFSS 201
+ +D NL +F Y G + +S
Sbjct: 344 WQREAKLKIDAPNLQSFTYLGYRMPLTS 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 10/208 (4%)
Query: 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIE 61
LP F+ +I VL L+ C+LE + +V L +LRKLC + D+Q I ++ CPLIE
Sbjct: 134 GLPAKIFSTTTITVLSLEQCRLE-ICGDVDLPALRKLCLRKILCDEQAIRQLISSCPLIE 192
Query: 62 YMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRT-LSDINVA 120
+ + CG LK L + L NL + L+R+ I+ ++ +R+ L D+
Sbjct: 193 DLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSLQYFMYDHQRSLLCDVVWT 252
Query: 121 PCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSRCLKKLFFK--- 177
P + L +L L +I ++ N VS + LE L ID +L+ +IS LK+L +
Sbjct: 253 PGEFLRELILHDRHITNDLLQNLVSGVPNLERLEID-STRLQRIEISHHQLKRLELRLSE 311
Query: 178 ----GEFMLDTSNLSTFEYQGNLVSFSS 201
+ +D NL +F Y G + +S
Sbjct: 312 WQREAKLKIDAPNLQSFTYLGYRMPLTS 339
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147810265|emb|CAN71448.1| hypothetical protein VITISV_027852 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 3/177 (1%)
Query: 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIE 61
LP F+ +I VL L+ C+LE + +V L +LRKLC + D+Q I ++ CPLIE
Sbjct: 134 GLPAKIFSTTTITVLSLEQCRLE-ICGDVDLPALRKLCLRKILCDEQAIRQLISSCPLIE 192
Query: 62 YMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRT-LSDINVA 120
+ + CG LK L + L NL + L+R+ I+ ++ +R+ L D+
Sbjct: 193 DLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSLQYFMYDHQRSLLCDVVWT 252
Query: 121 PCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSRCLKKLFFK 177
P + L +L L +I ++ N VS + LE L ID +L+ +IS L+++ K
Sbjct: 253 PGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDST-RLQRIEISHHQLQEIRTK 308
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 15/211 (7%)
Query: 2 NLPQVAFNAESIVVLELQFC--KLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPL 59
++P F A+S+ VL+L C KLE + L SL+KL V DD ++ V CPL
Sbjct: 143 SMPDAIFAAKSVTVLKLFGCNVKLEE-SFCIKLHSLQKLALKEVQMDDHLLRRIVTCCPL 201
Query: 60 IEYMHVFDCGGLKCLELPDLNNLKEFKAYDNF-RLQRLHINGVNV----CSIDLASRRTL 114
+E + + C GLK +++ +L LK+F+ Y + + + + I ++ CS + S + +
Sbjct: 202 LEDISLRFCWGLKKIQVFELLRLKKFEIYSHLSKPESVEIKSPSLESFHCSFTVRSVKPI 261
Query: 115 SDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSRCLKKL 174
++V C+ L+ L LSG ++ + + V K LE L + C L+ KISS LK L
Sbjct: 262 --VSVDACQGLKSLILSGSFVTELLLQDLVPKFHVLESLRVGDCPVLKKVKISSWRLKSL 319
Query: 175 FFKG-----EFMLDTSNLSTFEYQGNLVSFS 200
+ ++T NL + +Y G++V S
Sbjct: 320 EIHSCENIMDIEINTPNLLSCKYCGSVVPVS 350
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 8/204 (3%)
Query: 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIE 61
LP+V ++E++ L L C L N+ L L+KL V+ +Q++ + ++ CP IE
Sbjct: 172 TLPEVVLSSETLTGLRLSGCILRRC-GNIMLPRLQKLYLRKVHLGEQIVTNLISCCPSIE 230
Query: 62 YMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRR-TLSDINVA 120
+ C GLK L + ++L + ++ +L+ +I N+ + ++ T +N+
Sbjct: 231 DLRFVQCSGLKFLYI-HCDSLSRLEIHNCNQLKTAYIFAPNLDTFWFCGKKSTPCKVNLE 289
Query: 121 PCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSRCLKKLFFKG-- 178
C L+KL L + + NQ +K LE L + K++S I +RCL+++ KG
Sbjct: 290 DCASLKKLTLEHPRVSRDFCENQFNKFPLLEKLDLCIADKMKSITIFNRCLQRIVLKGCK 349
Query: 179 ---EFMLDTSNLSTFEYQGNLVSF 199
+ L +FE +G + +
Sbjct: 350 KLTYVQIYAPKLVSFELKGETMPY 373
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549680|ref|XP_002515891.1| hypothetical protein RCOM_1485780 [Ricinus communis] gi|223544796|gb|EEF46311.1| hypothetical protein RCOM_1485780 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 8/174 (4%)
Query: 49 VIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDL 108
+I++ + CPLI+ + + C GLK L L N L + L+ + + N+ +
Sbjct: 1 MIQNLMLSCPLIDDLRLIYCTGLKTLLLSS-NKLYRVDIHFCHGLKNVEVLSPNLQTFWY 59
Query: 109 ASRR-TLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS 167
++ T IN+A CK L+ L L + D+ N +S +E L + C LR IS
Sbjct: 60 HGKKSTRCKINLAMCKDLKSLTLEDANMSDDWFQNLLSNFSLIEQLILSKCNALRHITIS 119
Query: 168 SRCLKKLFFK-----GEFMLDTSNLSTFEYQGNLVSFSS-NALALSQIILFLST 215
R LKKL E +DT NL +FEY+G + FSS N +L + L+ +
Sbjct: 120 GRWLKKLALMECRELTEADIDTPNLLSFEYRGQKMPFSSLNPFSLKEAKLYFES 173
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745118|emb|CBI38957.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Query: 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIE 61
+ P F A +I VL L+ LE + ++ L +LRKL + D+Q I+ ++ CPLI+
Sbjct: 86 SFPAKIFAATTITVLSLRRVILE-ICGDIDLPALRKLYLGEIRCDEQPIQKLISSCPLID 144
Query: 62 YMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAP 121
+H+ C GL+ L + L NL+ + + L+R+ IN ++ + + D+ +
Sbjct: 145 CLHIESCHGLQKLHVSGLANLRRLEVIWCYELKRIEINAPSLQYLSYQQGKCPCDVVLRA 204
Query: 122 CKHLEKL 128
C+ L +L
Sbjct: 205 CEFLREL 211
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 226 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.2 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.14 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.12 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.06 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.06 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.87 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.75 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.72 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.66 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.53 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.43 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 98.4 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.38 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.32 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.28 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.24 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.22 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.15 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.08 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.07 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.97 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.95 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 97.94 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 97.88 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 97.88 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.81 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 97.77 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.77 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 97.74 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.62 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.53 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.51 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 97.47 | |
| PF07723 | 26 | LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le | 97.44 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 97.39 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.25 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.16 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 97.02 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 96.79 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.77 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.7 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.58 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.38 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.24 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.22 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.07 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 96.04 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.95 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 95.94 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 95.83 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.82 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.76 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 95.74 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.71 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.7 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 95.69 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.37 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.28 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 94.78 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.59 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 94.56 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 94.08 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 93.56 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 92.58 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 91.57 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 90.87 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 90.78 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 90.27 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 88.97 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 88.96 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 88.93 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 85.64 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 83.42 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 83.14 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 82.83 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-11 Score=115.25 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=70.7
Q ss_pred CCcccc-ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCC
Q 040388 3 LPQVAF-NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDL 79 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~ 79 (226)
+|..++ .+++|++|+|++|.+........+++|++|+|++|.++.. +..-+.++++|+.|++++|.-...+ .+..+
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence 455555 5566666666666553111122456666666666655322 2223456667777777666321111 23345
Q ss_pred CCcceEEeccCCCce---EEEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEe
Q 040388 80 NNLKEFKAYDNFRLQ---RLHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLH 154 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~---~~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~ 154 (226)
++|++|++++|.... ......++|++|++.+. ....+..+..+++|++|++++|.++...+.. +..+++|+.|+
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 266 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLF 266 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEE
Confidence 566666666553111 11112345555553221 1111122344455555555555544332222 23445555555
Q ss_pred cccc
Q 040388 155 IDCC 158 (226)
Q Consensus 155 l~~C 158 (226)
+.+|
T Consensus 267 L~~n 270 (968)
T PLN00113 267 LYQN 270 (968)
T ss_pred CcCC
Confidence 5443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-10 Score=110.67 Aligned_cols=55 Identities=31% Similarity=0.454 Sum_probs=33.0
Q ss_pred ccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeeccC--ccccceeEEcc
Q 040388 123 KHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS--SRCLKKLFFKG 178 (226)
Q Consensus 123 ~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~--~~~L~~L~l~~ 178 (226)
++|+.|++++|......+.. +.++++|+.|++.+|..++.++.. ..+|+.|++.+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~ 834 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG 834 (1153)
T ss_pred ccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC
Confidence 46666777666543333333 467788888888888776665422 24556666554
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-10 Score=112.72 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=77.0
Q ss_pred CccceeeeeccCCceEE--ecCCCCCcceEEeccCCCceEEEE--ecceeeEEEeCCCCccccccccCcccCcEEEeecc
Q 040388 58 PLIEYMHVFDCGGLKCL--ELPDLNNLKEFKAYDNFRLQRLHI--NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGL 133 (226)
Q Consensus 58 p~Le~L~l~~c~~l~~l--~i~~~~~Lk~L~l~~c~~l~~~~~--~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~ 133 (226)
|+|++|++++|..+..+ .++++++|+.|++++|..++.+.. +.++|++|++.++.... .......+|++|+++++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~-~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR-TFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc-cccccccccCEeECCCC
Confidence 45666666665544433 245577888888888876665532 46778888866542111 11123468899999998
Q ss_pred ccCchhHHHHHhcCCCCcEEeccccccceeeccCcc---ccceeEEcc
Q 040388 134 YIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSR---CLKKLFFKG 178 (226)
Q Consensus 134 ~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~~~---~L~~L~l~~ 178 (226)
.++.- ..-+..+++|+.|++.+|+.++.+..... +|+.+.+.+
T Consensus 857 ~i~~i--P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 857 GIEEV--PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred CCccC--hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 88752 33357899999999999999998876543 455555543
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-11 Score=108.95 Aligned_cols=208 Identities=22% Similarity=0.251 Sum_probs=101.8
Q ss_pred CCccccc-cCCccEEEecccccccc--cCccCCCcccEEEecceec---CHHHHHHHHhcCCccceeeeeccCCceEE--
Q 040388 3 LPQVAFN-AESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYE---DDQVIEDFVAGCPLIEYMHVFDCGGLKCL-- 74 (226)
Q Consensus 3 lP~~~~~-~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-- 74 (226)
||...|. ++.|+.|+|.+|.+... -.+.+++|||.|.|..+.+ +|. .+.+|.++|+|++..+. +..+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG----~Fy~l~kme~l~L~~N~-l~~vn~ 286 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG----AFYGLEKMEHLNLETNR-LQAVNE 286 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc----ceeeecccceeecccch-hhhhhc
Confidence 4444443 45555555555544321 1223455555555555543 222 14455556666555542 1111
Q ss_pred -ecCCCCCcceEEeccCCCceEEEEe----cceeeEEEeCC-C-CccccccccCcccCcEEEeeccccCchhHHHHHhcC
Q 040388 75 -ELPDLNNLKEFKAYDNFRLQRLHIN----GVNVCSIDLAS-R-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKL 147 (226)
Q Consensus 75 -~i~~~~~Lk~L~l~~c~~l~~~~~~----~~~L~~L~~~~-~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~ 147 (226)
-+-|+.+|+.|+++.+ .++.++++ +++|+.|++.. . .....-.+..+..|++|+|++|.++.-. +..+.+.
T Consensus 287 g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~-e~af~~l 364 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA-EGAFVGL 364 (873)
T ss_pred ccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH-hhHHHHh
Confidence 1234566777777766 45555553 46777777332 1 1111112344556666666666654321 2233455
Q ss_pred CCCcEEeccccccceeec-----cC-ccccceeEEcc-e-------EEEeCCCcceEEEeecceeecc----ccccceee
Q 040388 148 QFLEYLHIDCCMKLRSAK-----IS-SRCLKKLFFKG-E-------FMLDTSNLSTFEYQGNLVSFSS----NALALSQI 209 (226)
Q Consensus 148 ~~Le~L~l~~C~~L~~l~-----i~-~~~L~~L~l~~-~-------~~i~~p~L~sl~~~g~~~~~~~----~~~~l~~~ 209 (226)
.+|+.|++....---.++ +. -+.|++|.+.| + .....++||.+...++....+. .+++||++
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~L 444 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKEL 444 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhh
Confidence 666666665532111111 11 13456666655 1 2344567777777666543333 34577777
Q ss_pred eEeeecce
Q 040388 210 ILFLSTVI 217 (226)
Q Consensus 210 ~~~~~~~~ 217 (226)
.+...+|+
T Consensus 445 v~nSssfl 452 (873)
T KOG4194|consen 445 VMNSSSFL 452 (873)
T ss_pred hhcccceE
Confidence 77665553
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-10 Score=108.58 Aligned_cols=65 Identities=17% Similarity=0.064 Sum_probs=35.3
Q ss_pred CCccccccCCccEEEecccccc-ccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 3 LPQVAFNAESIVVLELQFCKLE-SLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~-~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+|..+..+++|++|++++|.+. ..+ ...++++|++|+|++|.++... ..-+..+++|+.|++++|
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCC
Confidence 4566666777777777776653 112 2235666666666666543221 122344555555555554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-11 Score=101.18 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=53.7
Q ss_pred cccCCccEEEeccccccc----ccCccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCceE----EecCC
Q 040388 8 FNAESIVVLELQFCKLES----LRNNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGLKC----LELPD 78 (226)
Q Consensus 8 ~~~~sL~~L~L~~c~~~~----~~~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l~~----l~i~~ 78 (226)
-+|+++++|.+++|.... ......++.|+.|+|..|.. ++..++.+..+||+|++|.++.|+.+.. -...|
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 357788888888887321 12234578888888888654 7888888888888888888888865432 11234
Q ss_pred CCCcceEEeccCC
Q 040388 79 LNNLKEFKAYDNF 91 (226)
Q Consensus 79 ~~~Lk~L~l~~c~ 91 (226)
|..++.+...+|.
T Consensus 241 ~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 241 CKELEKLSLKGCL 253 (483)
T ss_pred chhhhhhhhcccc
Confidence 4445555444443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-09 Score=96.04 Aligned_cols=196 Identities=19% Similarity=0.165 Sum_probs=117.8
Q ss_pred CCcccccc-CCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--CceEEecC
Q 040388 3 LPQVAFNA-ESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG--GLKCLELP 77 (226)
Q Consensus 3 lP~~~~~~-~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~l~~l~i~ 77 (226)
+|..-|.. ..+++|+|++|.+... ..+..+.+|..|-|+.++++. .-...+...|.||.|++..+. -.+.+.+.
T Consensus 164 i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive~ltFq 242 (873)
T KOG4194|consen 164 IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ 242 (873)
T ss_pred ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence 44444544 5899999999987632 223457789999999988732 123345567899999998763 23455667
Q ss_pred CCCCcceEEeccCC--Cce-EEEEecceeeEEEeC------------------------C--CCccccccccCcccCcEE
Q 040388 78 DLNNLKEFKAYDNF--RLQ-RLHINGVNVCSIDLA------------------------S--RRTLSDINVAPCKHLEKL 128 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~--~l~-~~~~~~~~L~~L~~~------------------------~--~~~~~~~~~~~~~~L~~L 128 (226)
|+++|+.+.+..+. .++ .+.-.+.+++.+++. . ....-...+..|++|++|
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 77888887777664 222 112223344444421 0 000011235567777777
Q ss_pred EeeccccCchhHHHHHhcCCCCcEEeccccccceeec---cCc-cccceeEEcc-eEE----------EeCCCcceEEEe
Q 040388 129 KLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK---ISS-RCLKKLFFKG-EFM----------LDTSNLSTFEYQ 193 (226)
Q Consensus 129 ~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~---i~~-~~L~~L~l~~-~~~----------i~~p~L~sl~~~ 193 (226)
+|++|.|+.--... +..+..||.|.+++ ..+.++. +-+ .+|++|+++. ++. -.-|.|.++.++
T Consensus 323 dLs~N~i~~l~~~s-f~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 323 DLSSNRITRLDEGS-FRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eccccccccCChhH-HHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 77777776543222 34556777777776 3334332 211 4677777775 322 124899999999
Q ss_pred ecceeecc
Q 040388 194 GNLVSFSS 201 (226)
Q Consensus 194 g~~~~~~~ 201 (226)
|++++.+.
T Consensus 401 gNqlk~I~ 408 (873)
T KOG4194|consen 401 GNQLKSIP 408 (873)
T ss_pred Cceeeecc
Confidence 99887766
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-09 Score=93.16 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=107.3
Q ss_pred ccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCceEEe----cCCCCCcceEEeccCCCc-----eEEEEecceee
Q 040388 35 LRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGLKCLE----LPDLNNLKEFKAYDNFRL-----QRLHINGVNVC 104 (226)
Q Consensus 35 Lk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~----i~~~~~Lk~L~l~~c~~l-----~~~~~~~~~L~ 104 (226)
+.++++.+|.. +|..+..+..+|..|+.|+.++|.++.... ..+|++|+.+.+++|..+ +.+..+++.|+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 33444444443 555555555566666666666665533221 135789999999999844 44556789999
Q ss_pred EEEeCCCCcc----ccccccCcccCcEEEeeccc-cCchhHHHH---HhcCCCCcEEeccccccceeec----cCccccc
Q 040388 105 SIDLASRRTL----SDINVAPCKHLEKLKLSGLY-IIDECPSNQ---VSKLQFLEYLHIDCCMKLRSAK----ISSRCLK 172 (226)
Q Consensus 105 ~L~~~~~~~~----~~~~~~~~~~L~~L~L~~~~-it~~~~~~l---~~~~~~Le~L~l~~C~~L~~l~----i~~~~L~ 172 (226)
.++..+.... ..--..+|+.|+.+.+++|. ||++....+ ..+...|+.+.+.+|+.+..-. -.+++||
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 9986554111 11123689999999999996 777754433 2345678999999998765432 2356899
Q ss_pred eeEEcc----------eEEEeCCCcceEEEeeccee
Q 040388 173 KLFFKG----------EFMLDTSNLSTFEYQGNLVS 198 (226)
Q Consensus 173 ~L~l~~----------~~~i~~p~L~sl~~~g~~~~ 198 (226)
++++.+ .+.-+.||++...|.+...|
T Consensus 430 ri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~ 465 (483)
T KOG4341|consen 430 RIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTP 465 (483)
T ss_pred eeeeechhhhhhhhhHHHHhhCccceehhhccCCCC
Confidence 998876 13467899999999887543
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-09 Score=89.39 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=18.4
Q ss_pred ccCcEEEeeccccCchhHH---HHHhcCCCCcEEecccc
Q 040388 123 KHLEKLKLSGLYIIDECPS---NQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 123 ~~L~~L~L~~~~it~~~~~---~l~~~~~~Le~L~l~~C 158 (226)
++|++|++++|.+++.... ..+..+++|+.|++++|
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 4566666666555443222 22344555666666554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-08 Score=83.20 Aligned_cols=165 Identities=19% Similarity=0.260 Sum_probs=107.3
Q ss_pred CccEEEeccccccc--c-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe----cCCCCCcce
Q 040388 12 SIVVLELQFCKLES--L-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE----LPDLNNLKE 84 (226)
Q Consensus 12 sL~~L~L~~c~~~~--~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~----i~~~~~Lk~ 84 (226)
.|++|+|++-.+.. . .....|..||.|+|.+..++|.....+ +.-.+|+.|+++.|.++..-. +++|..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 47778887655541 1 112357788888888887766655554 444678888888887765432 356778888
Q ss_pred EEeccCCCceE---EEE--ecceeeEEEeCCCCcc-----ccccccCcccCcEEEeeccc-cCchhHHHHHhcCCCCcEE
Q 040388 85 FKAYDNFRLQR---LHI--NGVNVCSIDLASRRTL-----SDINVAPCKHLEKLKLSGLY-IIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 85 L~l~~c~~l~~---~~~--~~~~L~~L~~~~~~~~-----~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~~Le~L 153 (226)
|+++-|...++ +.+ -.++|..|++.|+... ...-...|++|.+|+++.+. ++++.+..+ -.|+.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-Hhcchheee
Confidence 88877752221 111 2466777776664111 12234689999999999875 677665554 579999999
Q ss_pred eccccccc---eeeccC-ccccceeEEcc
Q 040388 154 HIDCCMKL---RSAKIS-SRCLKKLFFKG 178 (226)
Q Consensus 154 ~l~~C~~L---~~l~i~-~~~L~~L~l~~ 178 (226)
.++.|-.+ +.+++. -+.|.+|++.|
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 99999654 234443 36788888876
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-08 Score=85.09 Aligned_cols=169 Identities=16% Similarity=0.084 Sum_probs=114.1
Q ss_pred ccCCccEEEeccccccccc---CccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCc---eEEecCCCCC
Q 040388 9 NAESIVVLELQFCKLESLR---NNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGL---KCLELPDLNN 81 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~---~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l---~~l~i~~~~~ 81 (226)
+.++|++..|..|.+.... ....||..+.|+|+++-+ .=..+..++...|+||.|.++.+.-. ....-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567888899998876432 344699999999999887 45667888999999999999987421 1111113588
Q ss_pred cceEEeccCC----CceEEEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEec
Q 040388 82 LKEFKAYDNF----RLQRLHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHI 155 (226)
Q Consensus 82 Lk~L~l~~c~----~l~~~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l 155 (226)
||.|.++.|. .+..+...+|+|+.|...+. ........+.+..|+.|+|++|++-+..--.....+|.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999995 23444556899999884322 11112233456789999999988644322244578899999988
Q ss_pred cccccceeecc----------CccccceeEEcc
Q 040388 156 DCCMKLRSAKI----------SSRCLKKLFFKG 178 (226)
Q Consensus 156 ~~C~~L~~l~i----------~~~~L~~L~l~~ 178 (226)
..| .+..+.+ ..++|++|++..
T Consensus 279 s~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 279 SST-GIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred ccc-CcchhcCCCccchhhhcccccceeeeccc
Confidence 875 2222222 235788888765
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.1e-08 Score=88.65 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=84.8
Q ss_pred CCccccccCCccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDL 79 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~ 79 (226)
+|..+|..+.|++|+|++|.+...+ ....-+++-.|+|+++.+ ++....+..+..-|-.||++++ .++.+ .+..+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence 7899999999999999999887433 333567888999999876 1112223333344666777765 23322 22334
Q ss_pred CCcceEEeccCCCceEEEE-ecceee---EEEeCCC---CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcE
Q 040388 80 NNLKEFKAYDNFRLQRLHI-NGVNVC---SIDLASR---RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEY 152 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~~~~~-~~~~L~---~L~~~~~---~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~ 152 (226)
..|++|+++++. +..+++ ..|+++ .|.+.+. ....+..+..+.||..++++.|+++. +.+-.-..++|++
T Consensus 173 ~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 173 SMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRR 249 (1255)
T ss_pred hhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhhe
Confidence 567777887774 111111 233333 3333332 11123344555666666666666543 1222344566666
Q ss_pred Eeccc
Q 040388 153 LHIDC 157 (226)
Q Consensus 153 L~l~~ 157 (226)
|++++
T Consensus 250 LNLS~ 254 (1255)
T KOG0444|consen 250 LNLSG 254 (1255)
T ss_pred eccCc
Confidence 66665
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-07 Score=80.34 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=93.0
Q ss_pred ccCCccEEEeccccccccc---CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce--EEecCCCCCcc
Q 040388 9 NAESIVVLELQFCKLESLR---NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK--CLELPDLNNLK 83 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~---~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~--~l~i~~~~~Lk 83 (226)
.+++|+.|+|+.|.+..+. ....++.||.|.|++|.++...+..++..||.|+.|.+..+.++- ...-.....|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 3678999999998876321 223689999999999999988999999999999999999985421 11111236788
Q ss_pred eEEeccCCCce--E--EEEecceeeEEEe--CCCCcc--ccc----cccCcccCcEEEeeccccCc-hhHHHHHhcCCCC
Q 040388 84 EFKAYDNFRLQ--R--LHINGVNVCSIDL--ASRRTL--SDI----NVAPCKHLEKLKLSGLYIID-ECPSNQVSKLQFL 150 (226)
Q Consensus 84 ~L~l~~c~~l~--~--~~~~~~~L~~L~~--~~~~~~--~~~----~~~~~~~L~~L~L~~~~it~-~~~~~l~~~~~~L 150 (226)
.|+++++..+. + .....|.|+-+.. +|.... .+. ....+++|++|++..|+|.+ ..+.++ ...++|
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l-~~l~nl 328 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL-RTLENL 328 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh-hccchh
Confidence 88888886322 1 2224566666662 232111 111 12456788999998888743 222222 334555
Q ss_pred cEEe
Q 040388 151 EYLH 154 (226)
Q Consensus 151 e~L~ 154 (226)
..|.
T Consensus 329 k~l~ 332 (505)
T KOG3207|consen 329 KHLR 332 (505)
T ss_pred hhhh
Confidence 5554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-07 Score=77.15 Aligned_cols=173 Identities=21% Similarity=0.133 Sum_probs=111.8
Q ss_pred ccccccCCccEEEeccccccc--ccCccCC---CcccEEEecceecCHHHHHH---HHhcC-CccceeeeeccCCc----
Q 040388 5 QVAFNAESIVVLELQFCKLES--LRNNVTL---SSLRKLCSSHVYEDDQVIED---FVAGC-PLIEYMHVFDCGGL---- 71 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~--~~~~~~l---~sLk~L~L~~~~~~~~~l~~---l~~~c-p~Le~L~l~~c~~l---- 71 (226)
..+..+++|++|++++|.+.. ......+ ++|+.|++++|.+++..... .+..+ ++|++|++++|.--
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 445567899999999998751 1111122 55999999999986555443 34455 89999999998521
Q ss_pred eEE--ecCCCCCcceEEeccCCCce-----EEE---EecceeeEEEeCCCCc-c-----ccccccCcccCcEEEeecccc
Q 040388 72 KCL--ELPDLNNLKEFKAYDNFRLQ-----RLH---INGVNVCSIDLASRRT-L-----SDINVAPCKHLEKLKLSGLYI 135 (226)
Q Consensus 72 ~~l--~i~~~~~Lk~L~l~~c~~l~-----~~~---~~~~~L~~L~~~~~~~-~-----~~~~~~~~~~L~~L~L~~~~i 135 (226)
..+ .+.++++|++|++++|. +. .+. ...++|++|++.+... . ....+..+++|++|++++|.+
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 155 EALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 111 23456789999999885 22 111 1336899999654311 0 112345778999999999999
Q ss_pred CchhHHHHHhcC----CCCcEEeccccccc----eeec---cCccccceeEEcc
Q 040388 136 IDECPSNQVSKL----QFLEYLHIDCCMKL----RSAK---ISSRCLKKLFFKG 178 (226)
Q Consensus 136 t~~~~~~l~~~~----~~Le~L~l~~C~~L----~~l~---i~~~~L~~L~l~~ 178 (226)
++..+..+...+ +.|+.|++.+|..- ..+. ...++|+++++.+
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 886555555443 79999999998421 1111 1124677777764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=79.60 Aligned_cols=58 Identities=22% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+|..+. ++|+.|.+.+|.+...+. ..++|++|+|++|.++. +. ...+.|++|++++|
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N 272 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSN 272 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--cc---CcccccceeeccCC
Confidence 3566554 367888888877764332 35788888888876531 11 12356777777665
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-07 Score=83.21 Aligned_cols=143 Identities=21% Similarity=0.212 Sum_probs=87.9
Q ss_pred cccCCccEEEeccc-cccc------ccCccCCCcccEEEeccee-cCHHHHHHHHhcCCccceeeeeccCCceEEe----
Q 040388 8 FNAESIVVLELQFC-KLES------LRNNVTLSSLRKLCSSHVY-EDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---- 75 (226)
Q Consensus 8 ~~~~sL~~L~L~~c-~~~~------~~~~~~l~sLk~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---- 75 (226)
..++.|+.|++++| .... ......++.|+.|+++.+. +++.++..+...||+||.|.+.+|..+....
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 45778888888873 2210 1122346788888888877 5788888888888888888877777643221
Q ss_pred cCCCCCcceEEeccCCCc-----eEEEEecceeeEEEe---CC-----------CC-----ccccccccCcccCcEEEee
Q 040388 76 LPDLNNLKEFKAYDNFRL-----QRLHINGVNVCSIDL---AS-----------RR-----TLSDINVAPCKHLEKLKLS 131 (226)
Q Consensus 76 i~~~~~Lk~L~l~~c~~l-----~~~~~~~~~L~~L~~---~~-----------~~-----~~~~~~~~~~~~L~~L~L~ 131 (226)
..+|++|++++++.|..+ ..+...+|+|+.+.. .+ .. .........|++++.+.+.
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~ 370 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLS 370 (482)
T ss_pred HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhh
Confidence 134778888888877643 222234565555441 11 00 1122245678888888888
Q ss_pred ccccCchhHHHHHhcCCCC
Q 040388 132 GLYIIDECPSNQVSKLQFL 150 (226)
Q Consensus 132 ~~~it~~~~~~l~~~~~~L 150 (226)
++.+++........+||+|
T Consensus 371 ~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 371 YCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hhhccCcchHHHhcCCccc
Confidence 7776555544556677766
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.7e-07 Score=70.02 Aligned_cols=129 Identities=20% Similarity=0.200 Sum_probs=44.3
Q ss_pred ccCCccEEEecccccccccCc-cCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe--c-CCCCCcce
Q 040388 9 NAESIVVLELQFCKLESLRNN-VTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE--L-PDLNNLKE 84 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~-~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~--i-~~~~~Lk~ 84 (226)
++..+++|+|.|+.+...... ..+.+|+.|+|++|.++. +.. +.+++.|++|+++++. +..+. + ..+|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 344677777777776543222 246777777777776621 111 3445667777666652 22221 1 13566666
Q ss_pred EEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchh--HHHHHhcCCCCcEEeccccc
Q 040388 85 FKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDEC--PSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 85 L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~--~~~l~~~~~~Le~L~l~~C~ 159 (226)
|.++++. +.+ ......+..+++|++|++.+|.+++.. -..++..+|+|+.|+-....
T Consensus 93 L~L~~N~-I~~-----------------l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 93 LYLSNNK-ISD-----------------LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TTS----S-----------------CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred EECcCCc-CCC-----------------hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 6666552 111 001124567899999999999887542 23567788999998876553
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.9e-07 Score=75.64 Aligned_cols=149 Identities=18% Similarity=0.205 Sum_probs=81.1
Q ss_pred cCCccEEEecccccccc------cCccCCCcccEEEecceec---CHHH------HHHHHhcCCccceeeeeccC----C
Q 040388 10 AESIVVLELQFCKLESL------RNNVTLSSLRKLCSSHVYE---DDQV------IEDFVAGCPLIEYMHVFDCG----G 70 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~------~~~~~l~sLk~L~L~~~~~---~~~~------l~~l~~~cp~Le~L~l~~c~----~ 70 (226)
-.+++.++|+|+.+... ....+-++|+..+++...- .++. +..-+.+||.|+.|+|+++- +
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 46788999999987621 1112345777777766432 1222 22335678888888888872 1
Q ss_pred ceEE--ecCCCCCcceEEeccCC-C----------ce-----EEEEecceeeEEEe-CCCC--cc---ccccccCcccCc
Q 040388 71 LKCL--ELPDLNNLKEFKAYDNF-R----------LQ-----RLHINGVNVCSIDL-ASRR--TL---SDINVAPCKHLE 126 (226)
Q Consensus 71 l~~l--~i~~~~~Lk~L~l~~c~-~----------l~-----~~~~~~~~L~~L~~-~~~~--~~---~~~~~~~~~~L~ 126 (226)
.+.+ -|++|..|++|.+.+|. + +. .-.-+.|.|+.|.+ +++. .. ....+..++.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 1111 14557788888888774 0 00 11123466777763 2221 11 011244556666
Q ss_pred EEEeeccccCchh---HHHHHhcCCCCcEEecccc
Q 040388 127 KLKLSGLYIIDEC---PSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 127 ~L~L~~~~it~~~---~~~l~~~~~~Le~L~l~~C 158 (226)
.+.+.+|.|.... +..-+..||+|+.|++.+.
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 6666666653322 2233456666776666654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-06 Score=81.13 Aligned_cols=146 Identities=19% Similarity=0.172 Sum_probs=96.8
Q ss_pred CCccEEEecccccc---cc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLE---SL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~---~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L 85 (226)
.+|++|+++|-... ++ ....-||+|+.|.+.+..+..+.+..+..++|+|..||++++ ++..+ -++.+.+|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHH
Confidence 57999999986532 22 223359999999999999966669999999999999999997 33333 23445556555
Q ss_pred EeccCC-----CceEEEEecceeeEEEeCCC--Cccccc------cccCcccCcEEEeeccccCchhHHHHHhcCCCCcE
Q 040388 86 KAYDNF-----RLQRLHINGVNVCSIDLASR--RTLSDI------NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEY 152 (226)
Q Consensus 86 ~l~~c~-----~l~~~~~~~~~L~~L~~~~~--~~~~~~------~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~ 152 (226)
.+.+-. .+.++ .+..+|+.||.+.. .....+ .-..+|+|+.|+.++..++++.++.+...-|+|+.
T Consensus 201 ~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 554432 11111 24567777774322 100000 11357889999999888888888888777788887
Q ss_pred Eecccc
Q 040388 153 LHIDCC 158 (226)
Q Consensus 153 L~l~~C 158 (226)
...-+|
T Consensus 280 i~~~~~ 285 (699)
T KOG3665|consen 280 IAALDC 285 (699)
T ss_pred hhhhhh
Confidence 765544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.9e-06 Score=77.34 Aligned_cols=34 Identities=21% Similarity=0.035 Sum_probs=25.5
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceec
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~ 45 (226)
.++|++|++++|.+...+. ..++|+.|++.++.+
T Consensus 241 p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPL 274 (788)
T ss_pred CCCCcEEEecCCccCcccC--cccccceeeccCCch
Confidence 4789999999998764332 357888888888765
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.4e-06 Score=72.92 Aligned_cols=166 Identities=22% Similarity=0.264 Sum_probs=113.6
Q ss_pred cCCCcccEEEecceec---CHHHHHHHHhcCCccceeeeeccCC-----------ceEE----ecCCCCCcceEEeccCC
Q 040388 30 VTLSSLRKLCSSHVYE---DDQVIEDFVAGCPLIEYMHVFDCGG-----------LKCL----ELPDLNNLKEFKAYDNF 91 (226)
Q Consensus 30 ~~l~sLk~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~-----------l~~l----~i~~~~~Lk~L~l~~c~ 91 (226)
..+|.|++|+|+.|-+ ....+..+++.|..||+|.|.+|-- |..+ .+..-+.|+.+...++.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4688999999999988 4556788899999999999999931 2111 23445789988888775
Q ss_pred CceE--------EEEecceeeEEE--eCCCCcc----ccccccCcccCcEEEeeccccCchh---HHHHHhcCCCCcEEe
Q 040388 92 RLQR--------LHINGVNVCSID--LASRRTL----SDINVAPCKHLEKLKLSGLYIIDEC---PSNQVSKLQFLEYLH 154 (226)
Q Consensus 92 ~l~~--------~~~~~~~L~~L~--~~~~~~~----~~~~~~~~~~L~~L~L~~~~it~~~---~~~l~~~~~~Le~L~ 154 (226)
+.+ ..-..|.|+.+. +++.... ....+..|++|+.|++..|.++... +...++.+|+|+.|+
T Consensus 169 -len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 169 -LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred -cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 111 111347888888 3343111 1124678999999999999987653 345567889999999
Q ss_pred cccccc--------ceeeccCccccceeEEcc-eE-----------EEeCCCcceEEEeecc
Q 040388 155 IDCCMK--------LRSAKISSRCLKKLFFKG-EF-----------MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 155 l~~C~~--------L~~l~i~~~~L~~L~l~~-~~-----------~i~~p~L~sl~~~g~~ 196 (226)
+++|.- ...+.-+.+.|+.+.+.+ ++ .-+-|.|..|...|+.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999932 223334457788888876 11 1225777777777763
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.3e-07 Score=73.15 Aligned_cols=163 Identities=14% Similarity=0.080 Sum_probs=114.4
Q ss_pred CcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceEEeccCCCceEEE-----EecceeeE
Q 040388 33 SSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEFKAYDNFRLQRLH-----INGVNVCS 105 (226)
Q Consensus 33 ~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L~l~~c~~l~~~~-----~~~~~L~~ 105 (226)
..|+.|+|+...++...+..+++.|.+|+.|.+.+..--..+ .|..=.+|+.++++.|.++.... .+|..|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 469999999999999999999999999999998876321111 12212689999999998766533 35677777
Q ss_pred EE--eCCCCccc--cccccCcccCcEEEeeccc--cCchhHHHHHhcCCCCcEEeccccccceee----ccCccccceeE
Q 040388 106 ID--LASRRTLS--DINVAPCKHLEKLKLSGLY--IIDECPSNQVSKLQFLEYLHIDCCMKLRSA----KISSRCLKKLF 175 (226)
Q Consensus 106 L~--~~~~~~~~--~~~~~~~~~L~~L~L~~~~--it~~~~~~l~~~~~~Le~L~l~~C~~L~~l----~i~~~~L~~L~ 175 (226)
|+ +++...+. .+...--++|+.|+++|+. +.+..+..+...||+|..|++++|..++.- -...+.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 77 45532221 1112234688999999873 444456788899999999999999887652 12346788888
Q ss_pred Ecc------e--EE-EeCCCcceEEEeec
Q 040388 176 FKG------E--FM-LDTSNLSTFEYQGN 195 (226)
Q Consensus 176 l~~------~--~~-i~~p~L~sl~~~g~ 195 (226)
+.. + ++ -..|.|..+...|-
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 874 1 23 34789998888875
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.8e-06 Score=63.56 Aligned_cols=82 Identities=20% Similarity=0.181 Sum_probs=37.6
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--CceEE-ecCCCCCcceE
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG--GLKCL-ELPDLNNLKEF 85 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~l~~l-~i~~~~~Lk~L 85 (226)
.+.+|++|++++|.+....+...++.|+.|+++++.++.-. ..+...||+|++|.++++. ++..+ .++.|++|+.|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 46799999999999876566667999999999999983211 2234579999999998872 33333 34568889999
Q ss_pred EeccCC
Q 040388 86 KAYDNF 91 (226)
Q Consensus 86 ~l~~c~ 91 (226)
++.++.
T Consensus 119 ~L~~NP 124 (175)
T PF14580_consen 119 SLEGNP 124 (175)
T ss_dssp E-TT-G
T ss_pred eccCCc
Confidence 988874
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.6e-05 Score=73.10 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=18.2
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceec
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~ 45 (226)
++|+.|+|++|.+...+.. -+++|++|++++|.+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~L 232 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQL 232 (754)
T ss_pred cCCcEEEecCCCCCcCChh-hccCCCEEECCCCcc
Confidence 3566667766665432221 134566666666554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.9e-06 Score=76.18 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCc
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNL 82 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~L 82 (226)
+|..++ ++|++|++++|.+...+.. -.++|++|+|++|.+.. +..-+ ..+|+.|+++++ .+..+.-.-.++|
T Consensus 214 LP~~l~--~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~N-~L~~LP~~l~~sL 285 (754)
T PRK15370 214 LPENLQ--GNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITE--LPERL--PSALQSLDLFHN-KISCLPENLPEEL 285 (754)
T ss_pred CChhhc--cCCCEEECCCCccccCChh-hhccccEEECcCCccCc--CChhH--hCCCCEEECcCC-ccCccccccCCCC
Confidence 555554 4789999998887643321 23578888888887631 11111 136788887754 3433321112456
Q ss_pred ceEEeccCCCceEEEE----------------------ecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhH
Q 040388 83 KEFKAYDNFRLQRLHI----------------------NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECP 140 (226)
Q Consensus 83 k~L~l~~c~~l~~~~~----------------------~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~ 140 (226)
+.|++++|. ++.+.. -.++|++|++.+... ..+...-+++|+.|++++|.++. .+
T Consensus 286 ~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N~L~~-LP 362 (754)
T PRK15370 286 RYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENAL-TSLPASLPPELQVLDVSKNQITV-LP 362 (754)
T ss_pred cEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcc-ccCChhhcCcccEEECCCCCCCc-CC
Confidence 666666653 221111 123455554322100 00111123567777777776653 12
Q ss_pred HHHHhcCCCCcEEecccc
Q 040388 141 SNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 141 ~~l~~~~~~Le~L~l~~C 158 (226)
..+ .+.|+.|++.+|
T Consensus 363 ~~l---p~~L~~LdLs~N 377 (754)
T PRK15370 363 ETL---PPTITTLDVSRN 377 (754)
T ss_pred hhh---cCCcCEEECCCC
Confidence 222 256777777775
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.2e-06 Score=72.21 Aligned_cols=128 Identities=18% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCCcccEEEecceec-CHHHHHHHHhcCCccceeeeecc-CCc------eEEecCCCCCcceEEeccCCCceEEE-----
Q 040388 31 TLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDC-GGL------KCLELPDLNNLKEFKAYDNFRLQRLH----- 97 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c-~~l------~~l~i~~~~~Lk~L~l~~c~~l~~~~----- 97 (226)
.+|.|+.|.+..+.. ++..+..+...||.|++|++.+| ... .......|++|+.++++.|..+.+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478888888888765 66667888888888888888873 211 11123457888888888876444332
Q ss_pred EecceeeEEEeCCCCc----cccccccCcccCcEEEeeccc-cCchhHHHHHhcCCCCcEEecccc
Q 040388 98 INGVNVCSIDLASRRT----LSDINVAPCKHLEKLKLSGLY-IIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 98 ~~~~~L~~L~~~~~~~----~~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
-.+|+|+++...+... ........|++|++|++++|. +++..+..+..+|++++.|.+..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 2367888877433311 111234577888888888775 456656666677887777665443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.9e-07 Score=80.64 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=38.7
Q ss_pred CCccccccCCccEEEecccccccc--cCccCCCcccEEEecceec--CHHHHHHHHhcCCccceeeeeccC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYE--DDQVIEDFVAGCPLIEYMHVFDCG 69 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~c~ 69 (226)
.|..+-..+++-+|+|++|++... +.++++..|-.|+|+++++ -.-.+.+++ .|+.|++++++
T Consensus 118 vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~----~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS----MLQTLKLSNNP 184 (1255)
T ss_pred cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh----hhhhhhcCCCh
Confidence 466666677777788887776532 3345666777777777765 222334433 46666666653
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.8e-06 Score=70.29 Aligned_cols=124 Identities=19% Similarity=0.128 Sum_probs=79.4
Q ss_pred CCcccEEEecceec--CHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEEeccCC--CceEEEEecceeeEEE
Q 040388 32 LSSLRKLCSSHVYE--DDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFKAYDNF--RLQRLHINGVNVCSID 107 (226)
Q Consensus 32 l~sLk~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c~--~l~~~~~~~~~L~~L~ 107 (226)
|+-|+.++|+++.+ -|+. +.--|.++.|+++++.-...=++..+++|+.|+++++. .+...+....|+++|.
T Consensus 283 Wq~LtelDLS~N~I~~iDES----vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES----VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhhhhhh----hhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 45677888888876 3333 33348889999888754333345567889999998875 2333333455667776
Q ss_pred eCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 108 LASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
+.+.....-..+..+.+|.+|++++|+|....-..-++++|+||.+.+.+.+
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5442100011244566889999999998653222345789999999888754
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.6e-06 Score=80.55 Aligned_cols=43 Identities=28% Similarity=0.191 Sum_probs=22.7
Q ss_pred CCccccccCCccEEEecccccccc-cCccCCCcccEEEecceec
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~ 45 (226)
+|..++...+|+.|++..|.+... +....+.+|++|+|.++.+
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 445555555566666666555432 2233455666666655554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=1.5e-05 Score=74.07 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=101.3
Q ss_pred cccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce-------EEecC----------CCCCcceEEeccCC-----
Q 040388 34 SLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK-------CLELP----------DLNNLKEFKAYDNF----- 91 (226)
Q Consensus 34 sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~-------~l~i~----------~~~~Lk~L~l~~c~----- 91 (226)
++.+.++.+.......++-+-..+ |++|.+.+....+ .++|. .-.+|++|+|++..
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 566777777766555555443333 8999887763321 11111 11578888888754
Q ss_pred CceEEEEecceeeEEEeCCCCcc---ccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec---
Q 040388 92 RLQRLHINGVNVCSIDLASRRTL---SDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK--- 165 (226)
Q Consensus 92 ~l~~~~~~~~~L~~L~~~~~~~~---~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~--- 165 (226)
..+.+.-..|+|++|..+|.... +.....++++|..|++++.+++.- ...+.+++||.|.+.+.+.-..-.
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchhhHHH
Confidence 33455667899999998775221 122346889999999999998874 456788888888877643222111
Q ss_pred -cCccccceeEEcc--------------eEEEeCCCcceEEEeecce
Q 040388 166 -ISSRCLKKLFFKG--------------EFMLDTSNLSTFEYQGNLV 197 (226)
Q Consensus 166 -i~~~~L~~L~l~~--------------~~~i~~p~L~sl~~~g~~~ 197 (226)
+.=.+|+.|+++. +-....|+|..++..|..|
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 1124677777765 1234489999999998754
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=3.5e-06 Score=76.83 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=44.6
Q ss_pred CccceeeeeccCCceEEecCCCCCcceEEeccCC--CceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeecccc
Q 040388 58 PLIEYMHVFDCGGLKCLELPDLNNLKEFKAYDNF--RLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYI 135 (226)
Q Consensus 58 p~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c~--~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~i 135 (226)
|.+|.|+|+.+.-.+.-.+..|+.||+|+++.+. .+..+.-.+-.|+.|.++|.....-..+..+++|+.|++++|-+
T Consensus 187 ~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred HHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhh
Confidence 4455555555432221133446777777776653 22222222222555554442111112344556666666666655
Q ss_pred CchhHHHHHhcCCCCcEEeccc
Q 040388 136 IDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 136 t~~~~~~l~~~~~~Le~L~l~~ 157 (226)
.+..--.....+..|..|.+.|
T Consensus 267 ~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 267 SEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hcchhhhHHHHHHHHHHHhhcC
Confidence 4432112222334445555554
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0001 Score=46.55 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=37.9
Q ss_pred CCccEEEeccccccccc--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 11 ESIVVLELQFCKLESLR--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
++|++|++++|.+...+ ...++++|++|+++++.++.- -...+.++|+|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 46888888888776432 334688888888888776211 1123667777777777765
|
... |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=4.7e-06 Score=77.59 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=47.0
Q ss_pred CCCccccccCCccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+|..+..|.+|+.++..++.+...+ ......+|+.|+...|.+ +-+.....+...|+.|++..+
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel--~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL--EYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh--hhCCCcccccceeeeeeehhc
Confidence 46888889999999999999886432 334578888888888753 223333556677899988765
|
|
| >PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00016 Score=37.58 Aligned_cols=25 Identities=36% Similarity=0.697 Sum_probs=22.8
Q ss_pred cccEEEecceec-CHHHHHHHHhcCC
Q 040388 34 SLRKLCSSHVYE-DDQVIEDFVAGCP 58 (226)
Q Consensus 34 sLk~L~L~~~~~-~~~~l~~l~~~cp 58 (226)
+||+|+|..+.+ +++.+++++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 689999999999 6668999999998
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ]. |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=1e-06 Score=75.21 Aligned_cols=132 Identities=22% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCccccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLN 80 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~ 80 (226)
+|...+++.+|..|.+.++.+... +..+.+.+||.|+..++.+ +.+..=+++...|+-|++.++. +..+ .+.||.
T Consensus 152 lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs 228 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNK-IRFLPEFPGCS 228 (565)
T ss_pred CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcc-cccCCCCCccH
Confidence 445555555555555555554322 2223455555555544422 1122223333445555555442 2222 455666
Q ss_pred CcceEEeccCC--Cce-EEEEecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCc
Q 040388 81 NLKEFKAYDNF--RLQ-RLHINGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 81 ~Lk~L~l~~c~--~l~-~~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
.|+.+.++.+. -++ ....+.+++..+++++. ....+....-+++|.+|+++.|.|+.
T Consensus 229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc
Confidence 66666666553 111 11123455555554332 11111222334455566666555544
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.25 E-value=9.8e-06 Score=62.04 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=83.5
Q ss_pred cccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCc
Q 040388 6 VAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNL 82 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~L 82 (226)
.+|+.+.++.|.|+++++... +....+.+|+.|.++++.+ +.+..-++..|.|+.|.+..+. +..+ -++++|.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhh-hhcCccccCCCchh
Confidence 467788888999999987643 4555788999999988865 2233446677788888776442 1111 23456777
Q ss_pred ceEEeccCC----CceEEEEecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 83 KEFKAYDNF----RLQRLHINGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 83 k~L~l~~c~----~l~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
..|++..++ .+..-.....-|+.+.+.+. ....+-+.+.+.+|+.|.+..+++-.- +.+ ++.+..|+.|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l-pke-ig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL-PKE-IGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC-cHH-HHHHHHHHHHhccc
Confidence 777777654 11111111112222222221 112233556677777777777664321 222 34556666666666
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00039 Score=43.85 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=30.9
Q ss_pred cccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 118 NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
.+.++++|++|++++|.++.-. ...+.++++|+.|+++++.
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred HHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 4667888999999988886542 3456788888888888753
|
... |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=1.6e-06 Score=74.16 Aligned_cols=65 Identities=23% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCccccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+|+.++....++.|+.+++++... +.....++|++++.+++.+.+ +..=++.|-.+|+|+-.++
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNN 147 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhcccc
Confidence 3566677777777777777766533 334467777777777765410 1111333445666665554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00097 Score=58.01 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=48.3
Q ss_pred ccCCccEEEecccccccccCccCCC--cccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecC-CCCCcceE
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLS--SLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELP-DLNNLKEF 85 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~--sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~-~~~~Lk~L 85 (226)
..+.++.|.+.++.+...+....+. +|+.|+++++.+.. +..-+..+|+|+.|++++|.--.--... ..++|+.+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3456788888887776443333443 78888888876422 2123667888888888887422111111 34667777
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
+++++
T Consensus 192 ~ls~N 196 (394)
T COG4886 192 DLSGN 196 (394)
T ss_pred eccCC
Confidence 77766
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0034 Score=54.83 Aligned_cols=134 Identities=17% Similarity=0.231 Sum_probs=72.7
Q ss_pred ccCCccEEEecccccccccCccCCC-cccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEEe
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLS-SLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFKA 87 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~-sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l 87 (226)
.|+.+++|++++|.+...+ .+| +|+.|.+++|.-- +.+...+ .++|++|++.+|..+..+ . ++|++|++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sL--P--~sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGL--P--ESVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccc--c--cccceEEe
Confidence 4678899999999776433 344 6999999886431 1111111 257899999888776543 2 56788887
Q ss_pred ccCCCceEEEEecceeeEEEeCCCCcc--ccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 88 YDNFRLQRLHINGVNVCSIDLASRRTL--SDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 88 ~~c~~l~~~~~~~~~L~~L~~~~~~~~--~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
.++ ....+..--++|+.|.+.+.... ......-.++|++|.+.+|..... +..+ + .+|+.|+++.
T Consensus 120 ~~n-~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L-P~~L-P--~SLk~L~ls~ 186 (426)
T PRK15386 120 KGS-ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIIL-PEKL-P--ESLQSITLHI 186 (426)
T ss_pred CCC-CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccC-cccc-c--ccCcEEEecc
Confidence 643 22222212245666664321100 000001224777787777653321 1111 1 4677777654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0016 Score=38.32 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=20.2
Q ss_pred CCccEEEecccccccccC-ccCCCcccEEEecceec
Q 040388 11 ESIVVLELQFCKLESLRN-NVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~-~~~l~sLk~L~L~~~~~ 45 (226)
++|++|++++|.+...+. ...+++|+.|+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 356777777776653333 44567777777766655
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0017 Score=54.01 Aligned_cols=151 Identities=18% Similarity=0.118 Sum_probs=94.6
Q ss_pred ccCCccEEEecccccccccC--ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEec-----CC-CC
Q 040388 9 NAESIVVLELQFCKLESLRN--NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLEL-----PD-LN 80 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~--~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i-----~~-~~ 80 (226)
..+.|++|+|+.|++...-. .....+|++|.|.+..++=+.....+..-|.+++|.++.+. ++.+.+ .. -+
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~ 173 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWST 173 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccch
Confidence 46789999999988764211 13456899999988877666777888889999999998762 111111 10 15
Q ss_pred CcceEEeccCCC-----ceEEEEecceeeEEEeC-CC--CccccccccCcccCcEEEeeccccCc-hhHHHHHhcCCCCc
Q 040388 81 NLKEFKAYDNFR-----LQRLHINGVNVCSIDLA-SR--RTLSDINVAPCKHLEKLKLSGLYIID-ECPSNQVSKLQFLE 151 (226)
Q Consensus 81 ~Lk~L~l~~c~~-----l~~~~~~~~~L~~L~~~-~~--~~~~~~~~~~~~~L~~L~L~~~~it~-~~~~~l~~~~~~Le 151 (226)
.++++...+|.. .-.+..-.||+..+-.+ |. ..........++.+.-|++..++|.+ +.+.. ...|+.|.
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~ 252 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLV 252 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhh
Confidence 677777777751 11223345777766633 32 11111234455666677787777744 33334 46788898
Q ss_pred EEeccccccc
Q 040388 152 YLHIDCCMKL 161 (226)
Q Consensus 152 ~L~l~~C~~L 161 (226)
.|.+...+-.
T Consensus 253 dlRv~~~Pl~ 262 (418)
T KOG2982|consen 253 DLRVSENPLS 262 (418)
T ss_pred eeeccCCccc
Confidence 8888876543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0043 Score=36.49 Aligned_cols=34 Identities=38% Similarity=0.415 Sum_probs=24.6
Q ss_pred ccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 123 KHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 123 ~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
++|++|+++++.|++- ...+.++++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCccc--CchHhCCCCCCEEEecCC
Confidence 4688899999888863 333578889999988886
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0093 Score=49.15 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=109.7
Q ss_pred cCCccEEEeccccccc-----ccC-ccCCCcccEEEecceec---CHHH------HHHHHhcCCccceeeeeccC-CceE
Q 040388 10 AESIVVLELQFCKLES-----LRN-NVTLSSLRKLCSSHVYE---DDQV------IEDFVAGCPLIEYMHVFDCG-GLKC 73 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~-----~~~-~~~l~sLk~L~L~~~~~---~~~~------l~~l~~~cp~Le~L~l~~c~-~l~~ 73 (226)
..+++.++|+||.+.. ... ..+-.+|+...++.... .++. +...+.+||.|+..+++++. +.+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5688999999998862 111 12346777777766543 2222 23346789999999999873 2222
Q ss_pred E-----ecCCCCCcceEEeccCCCceEE-----------------EEecceeeEEEe-CCC--Cccc---cccccCcccC
Q 040388 74 L-----ELPDLNNLKEFKAYDNFRLQRL-----------------HINGVNVCSIDL-ASR--RTLS---DINVAPCKHL 125 (226)
Q Consensus 74 l-----~i~~~~~Lk~L~l~~c~~l~~~-----------------~~~~~~L~~L~~-~~~--~~~~---~~~~~~~~~L 125 (226)
. -|++-..|++|.+++|. +..+ .-+.|.|+++.+ .++ ..+. ...+.+-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 1 24555889999999884 2211 225688888873 222 1111 1223444688
Q ss_pred cEEEeeccccCchhHH----HHHhcCCCCcEEeccccccce--e--e--ccC-ccccceeEEcce--------------E
Q 040388 126 EKLKLSGLYIIDECPS----NQVSKLQFLEYLHIDCCMKLR--S--A--KIS-SRCLKKLFFKGE--------------F 180 (226)
Q Consensus 126 ~~L~L~~~~it~~~~~----~l~~~~~~Le~L~l~~C~~L~--~--l--~i~-~~~L~~L~l~~~--------------~ 180 (226)
+.+.+.+|.|....+. .-...+.+|+.|++.+...-. + + ... .+.|..|.+.+- -
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 8888888887665432 223577889999888753211 1 1 112 234566666540 2
Q ss_pred EEeCCCcceEEEeec
Q 040388 181 MLDTSNLSTFEYQGN 195 (226)
Q Consensus 181 ~i~~p~L~sl~~~g~ 195 (226)
....|||+.+.+.-+
T Consensus 268 e~~~p~l~~L~~~Yn 282 (388)
T COG5238 268 EKFVPNLMPLPGDYN 282 (388)
T ss_pred hhcCCCccccccchh
Confidence 466788887766433
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.016 Score=50.70 Aligned_cols=133 Identities=12% Similarity=0.137 Sum_probs=65.0
Q ss_pred CCcccEEEecceecCHHHHHHHHhcCC-ccceeeeeccCCceEEecCCCCCcceEEeccCCCceEEEEecceeeEEEeCC
Q 040388 32 LSSLRKLCSSHVYEDDQVIEDFVAGCP-LIEYMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLAS 110 (226)
Q Consensus 32 l~sLk~L~L~~~~~~~~~l~~l~~~cp-~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~ 110 (226)
++.++.|++++|.++ .+. ..| +|++|.+.+|.+++.+.-.-.++|++|.+++|..+..+. ++|+.|.+.+
T Consensus 51 ~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeCC
Confidence 566666666666431 111 122 366666666666544421112466777777665444332 3455555332
Q ss_pred CCccccccccC-cccCcEEEeeccccCchhHHHHHhcC-CCCcEEeccccccceeeccCccccceeEEcc
Q 040388 111 RRTLSDINVAP-CKHLEKLKLSGLYIIDECPSNQVSKL-QFLEYLHIDCCMKLRSAKISSRCLKKLFFKG 178 (226)
Q Consensus 111 ~~~~~~~~~~~-~~~L~~L~L~~~~it~~~~~~l~~~~-~~Le~L~l~~C~~L~~l~i~~~~L~~L~l~~ 178 (226)
.... .+.. .++|+.|.+.+.+.... ..+...+ ++|+.|.+.+|..+..-..-..+|+.|.+..
T Consensus 122 n~~~---~L~~LPssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 122 SATD---SIKNVPNGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred CCCc---ccccCcchHhheeccccccccc--cccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 1000 1112 23566666643321100 0001123 5899999999876542221235788888754
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0012 Score=51.85 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=41.7
Q ss_pred CccEEEecccccccc--cCccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCceEEec---CCCCCcceE
Q 040388 12 SIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGLKCLEL---PDLNNLKEF 85 (226)
Q Consensus 12 sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i---~~~~~Lk~L 85 (226)
.++.++-+++.+... ....++++++.|.+..|.. +|..++.+-...|+||.|+++.|+.++.--+ ..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455555555544311 1223566666777766655 6666666666666677777776665443211 123455555
Q ss_pred Eec
Q 040388 86 KAY 88 (226)
Q Consensus 86 ~l~ 88 (226)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 544
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.00048 Score=59.09 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=31.3
Q ss_pred CccEEEecccccccc-c-CccCCCcccEEEecceec---CHHHHHHHHhcCCccceeeeeccCC
Q 040388 12 SIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYE---DDQVIEDFVAGCPLIEYMHVFDCGG 70 (226)
Q Consensus 12 sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~ 70 (226)
+-+.++|..|.+... + .+..+++|+.|+|+++.+ +.+++ .|.+.+-+|.+.+...
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF----~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF----KGLASLLSLVLYGNNK 127 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh----hhhHhhhHHHhhcCCc
Confidence 345677777776533 2 234577888888888776 34443 3334455555554333
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.011 Score=54.87 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=19.7
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+..+++|+.|++++|.++...+.. +..+++|+.|+++++
T Consensus 462 ~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 462 LGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGN 500 (623)
T ss_pred HhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCC
Confidence 345555555555555554443322 345555555555554
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0005 Score=52.83 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=83.9
Q ss_pred CCCccccccCCccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce-EE--ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK-CL--ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~-~l--~i~ 77 (226)
.+|+.+..+.+|++|++.++.+...+ ...++|.|+.|.+..+++ ..+.+=+...|.||.||+.++.--+ .+ .+.
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhccccccccccCCcchh
Confidence 36888889999999999999886443 344689999998887654 1222335667999999999863211 11 111
Q ss_pred CCCCcceEEeccCCCceEE---EEecceeeEEEeCCCC-ccccccccCcccCcEEEeeccccCc
Q 040388 78 DLNNLKEFKAYDNFRLQRL---HINGVNVCSIDLASRR-TLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~---~~~~~~L~~L~~~~~~-~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
.+..|+-|.++++. ++-+ .-...+|+.+...+.+ ...+..++.+..|++|++.++.++.
T Consensus 125 ~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 125 YMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence 23556666666553 1111 1134566767654431 1123345677889999999988765
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0043 Score=51.67 Aligned_cols=151 Identities=10% Similarity=-0.008 Sum_probs=78.5
Q ss_pred cccccCCccEEEeccccccccc----CccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccC---CceEEecC
Q 040388 6 VAFNAESIVVLELQFCKLESLR----NNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCG---GLKCLELP 77 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~----~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~---~l~~l~i~ 77 (226)
+++....++.|.+.+|.++... .......++.++|.++.+ +=..+..++...|.|+.|.++.+. .+.++.+.
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 4444455666777777765311 112456777788888777 444567777777888888776552 12322211
Q ss_pred CCCCcceEEeccCC----CceEEEEecceeeEEEeCCC-------CccccccccCcccCcEEEeeccccC-chhHHHHHh
Q 040388 78 DLNNLKEFKAYDNF----RLQRLHINGVNVCSIDLASR-------RTLSDINVAPCKHLEKLKLSGLYII-DECPSNQVS 145 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~----~l~~~~~~~~~L~~L~~~~~-------~~~~~~~~~~~~~L~~L~L~~~~it-~~~~~~l~~ 145 (226)
..+|+.+.+.+-. ..+...-+.|.++.|++... +..+.-. --+.++.++..+|... +.....+..
T Consensus 120 -~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 120 -LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred -ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 2466666665543 11222224455555542110 0011000 1123455555555321 111245667
Q ss_pred cCCCCcEEeccccc
Q 040388 146 KLQFLEYLHIDCCM 159 (226)
Q Consensus 146 ~~~~Le~L~l~~C~ 159 (226)
-||+++.+.++.|+
T Consensus 197 ~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP 210 (418)
T ss_pred hcccchheeeecCc
Confidence 88888888888773
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0037 Score=50.74 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=65.3
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCC--ceEE-ecCCCCCcceE
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGG--LKCL-ELPDLNNLKEF 85 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~--l~~l-~i~~~~~Lk~L 85 (226)
...|+.|++.++.+........+|.||+|.++.++. ....+.-++..||+|.+|.++.++. +..+ .+..+.+|+.|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 345667777777766444555788999999999855 3445666788889999999988742 2222 12345778888
Q ss_pred EeccCCCce------EEEEecceeeEEE
Q 040388 86 KAYDNFRLQ------RLHINGVNVCSID 107 (226)
Q Consensus 86 ~l~~c~~l~------~~~~~~~~L~~L~ 107 (226)
+++.|...+ .++.-.|+|++++
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccc
Confidence 888886221 2233457777777
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0031 Score=51.22 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=55.8
Q ss_pred CCccceeeeeccCCceEEecCCCCCcceEEeccCC-----CceEEEEecceeeEEEeCCC-Ccc--ccccccCcccCcEE
Q 040388 57 CPLIEYMHVFDCGGLKCLELPDLNNLKEFKAYDNF-----RLQRLHINGVNVCSIDLASR-RTL--SDINVAPCKHLEKL 128 (226)
Q Consensus 57 cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c~-----~l~~~~~~~~~L~~L~~~~~-~~~--~~~~~~~~~~L~~L 128 (226)
.-.|+.|++.++.-.......-+|+||+|.++.+. ++.-....+|+|+++..+|. ..+ ..-.+....+|..|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 34455555555533333344456777777777763 23333445677777774442 111 01123455667777
Q ss_pred EeeccccCc--hhHHHHHhcCCCCcEEeccccc
Q 040388 129 KLSGLYIID--ECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 129 ~L~~~~it~--~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
++..|..+. +.=..++.-.|+|..|+-..+.
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 777766543 1123456667777777665553
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0097 Score=49.75 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCccceeeeeccCC----------ceEEecCCCCCcceEEeccCC--CceEEEEecceeeEEE
Q 040388 48 QVIEDFVAGCPLIEYMHVFDCGG----------LKCLELPDLNNLKEFKAYDNF--RLQRLHINGVNVCSID 107 (226)
Q Consensus 48 ~~l~~l~~~cp~Le~L~l~~c~~----------l~~l~i~~~~~Lk~L~l~~c~--~l~~~~~~~~~L~~L~ 107 (226)
..+.+++.-|..|..|..+...+ +-.++++.+.+|+.++++.|. ++.++...-|-|+++.
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~ 243 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTIC 243 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheee
Confidence 34666777777788887776532 222334445778888888776 5555555556666665
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.0059 Score=50.29 Aligned_cols=128 Identities=17% Similarity=0.145 Sum_probs=87.5
Q ss_pred cCCCcccEEEecceec---CHHHHHHHHhcCCccceeeeeccCC-----------ceEE----ecCCCCCcceEEeccCC
Q 040388 30 VTLSSLRKLCSSHVYE---DDQVIEDFVAGCPLIEYMHVFDCGG-----------LKCL----ELPDLNNLKEFKAYDNF 91 (226)
Q Consensus 30 ~~l~sLk~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~-----------l~~l----~i~~~~~Lk~L~l~~c~ 91 (226)
.+||.|++.+|+.+-+ ....+..+++....|++|.+.+|.- +.++ .+.+-|.|+.+....+.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 4799999999999988 5666788899999999999999831 1111 23345888888777664
Q ss_pred CceEEE-------Ee-cceeeEEE--eCCCC-c----cccccccCcccCcEEEeeccccCchh---HHHHHhcCCCCcEE
Q 040388 92 RLQRLH-------IN-GVNVCSID--LASRR-T----LSDINVAPCKHLEKLKLSGLYIIDEC---PSNQVSKLQFLEYL 153 (226)
Q Consensus 92 ~l~~~~-------~~-~~~L~~L~--~~~~~-~----~~~~~~~~~~~L~~L~L~~~~it~~~---~~~l~~~~~~Le~L 153 (226)
+.... .. -.+|+.+. ++|.. . ..-..+..|++|+.|++..|.+|... +....+..+.|..|
T Consensus 169 -lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 -LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred -hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 11100 01 13566666 45531 1 11123468899999999999887643 34556777889999
Q ss_pred ecccc
Q 040388 154 HIDCC 158 (226)
Q Consensus 154 ~l~~C 158 (226)
.+.+|
T Consensus 248 ~lnDC 252 (388)
T COG5238 248 RLNDC 252 (388)
T ss_pred cccch
Confidence 99999
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.0088 Score=55.45 Aligned_cols=79 Identities=16% Similarity=0.016 Sum_probs=57.1
Q ss_pred CccEEEecccccc-cc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCc--eEEecCCCCCcceEEe
Q 040388 12 SIVVLELQFCKLE-SL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGL--KCLELPDLNNLKEFKA 87 (226)
Q Consensus 12 sL~~L~L~~c~~~-~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l--~~l~i~~~~~Lk~L~l 87 (226)
.++.|+|++|.+. .. .....+++|+.|+|+++.+.+. +...+..++.|+.|++++|.-- ..-.++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3788899988875 22 2334689999999999887543 3334678899999999987432 1223567889999999
Q ss_pred ccCC
Q 040388 88 YDNF 91 (226)
Q Consensus 88 ~~c~ 91 (226)
++|.
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 9885
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0061 Score=53.01 Aligned_cols=150 Identities=20% Similarity=0.189 Sum_probs=86.5
Q ss_pred CCCccccccC-CccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEec--C
Q 040388 2 NLPQVAFNAE-SIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLEL--P 77 (226)
Q Consensus 2 ~lP~~~~~~~-sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i--~ 77 (226)
.+|......+ +|+.|+++++.+...+ ....++.|+.|++.++.+++ +.......+.|+.|+++++ .+..+.- .
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~ 206 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGN-KISDLPPEIE 206 (394)
T ss_pred cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCC-ccccCchhhh
Confidence 4566666664 8999999999887532 34568999999999987632 3333336788899988886 2322221 1
Q ss_pred CCCCcceEEeccCCCceEE--EEecceeeEEEeCC-CCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEe
Q 040388 78 DLNNLKEFKAYDNFRLQRL--HINGVNVCSIDLAS-RRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLH 154 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~--~~~~~~L~~L~~~~-~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~ 154 (226)
....|+++.++++...+.. .-...++..+...+ .........+.+++++.|+++++.+++.. . +....+++.|+
T Consensus 207 ~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~--~-~~~~~~l~~L~ 283 (394)
T COG4886 207 LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS--S-LGSLTNLRELD 283 (394)
T ss_pred hhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc--c-ccccCccCEEe
Confidence 2234777777776311111 11223333333111 11111123455666777777777776532 2 45667777777
Q ss_pred ccc
Q 040388 155 IDC 157 (226)
Q Consensus 155 l~~ 157 (226)
+++
T Consensus 284 ~s~ 286 (394)
T COG4886 284 LSG 286 (394)
T ss_pred ccC
Confidence 765
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.044 Score=43.25 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=53.8
Q ss_pred cccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec-----cCccccceeEEcc----------e-EE
Q 040388 118 NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK-----ISSRCLKKLFFKG----------E-FM 181 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~-----i~~~~L~~L~l~~----------~-~~ 181 (226)
.+...++|..|.+..|.|+.-. ..+...+|+|..|.+.+ ..++.+. .++++|+.|.+.+ + ..
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred cCCCccccceEEecCCcceeec-cchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 4567788888999888887744 24556678888888887 3333331 2457888888876 1 45
Q ss_pred EeCCCcceEEEeec
Q 040388 182 LDTSNLSTFEYQGN 195 (226)
Q Consensus 182 i~~p~L~sl~~~g~ 195 (226)
...|+|+.|.|++-
T Consensus 137 ~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcceEeehhhh
Confidence 77899999998753
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.047 Score=43.10 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=52.3
Q ss_pred CccEEEecccccccccCccCCCcccEEEecceecC--HHHHHHHHhcCCccceeeeeccCC--ceEE-ecCCCCCcceEE
Q 040388 12 SIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYED--DQVIEDFVAGCPLIEYMHVFDCGG--LKCL-ELPDLNNLKEFK 86 (226)
Q Consensus 12 sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~~--l~~l-~i~~~~~Lk~L~ 86 (226)
....++|..+.+........++.|++|.|..+.++ +..+. .-.|+|..|.+.++.- +..+ .+.+||+|+.|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 44556666665543334446777788888777762 22222 2346677777776532 1111 234577777777
Q ss_pred eccCC-----CceE-EEEecceeeEEEeCC
Q 040388 87 AYDNF-----RLQR-LHINGVNVCSIDLAS 110 (226)
Q Consensus 87 l~~c~-----~l~~-~~~~~~~L~~L~~~~ 110 (226)
+-++. +... +.-..|+|+.|++.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 76664 2222 222356666666543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.031 Score=53.81 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=46.4
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceEEe
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEFKA 87 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L~l 87 (226)
.+.+...+.++.+........+|.|++|-+..+.. -......++..-|.|..||+++|..+..+ .|+++-+||.|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 34555666655554334555666777777766641 11111222445677777777777666555 3556667777777
Q ss_pred ccC
Q 040388 88 YDN 90 (226)
Q Consensus 88 ~~c 90 (226)
++.
T Consensus 603 ~~t 605 (889)
T KOG4658|consen 603 SDT 605 (889)
T ss_pred cCC
Confidence 665
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.0021 Score=52.98 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--CceEE-ecCCCCCcceEEe
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG--GLKCL-ELPDLNNLKEFKA 87 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~l~~l-~i~~~~~Lk~L~l 87 (226)
.+.+.|+.-||.+.-......+|.|+.|+|+-+.++ .+.. +..|..|++|.|+.+. .+..+ .+.++|+|+.|.+
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs--sL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS--SLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccc--cchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 345667777777763334446788888888777651 1222 4567778888776542 22111 2345677777777
Q ss_pred ccCC
Q 040388 88 YDNF 91 (226)
Q Consensus 88 ~~c~ 91 (226)
..+.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 6543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.0039 Score=59.80 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=54.4
Q ss_pred Cccccc-cCCccEEEeccccc-ccccCcc-CCCcccEEEecceecC--HHHHHHHHhcCCccceeeeeccCCceEE-ecC
Q 040388 4 PQVAFN-AESIVVLELQFCKL-ESLRNNV-TLSSLRKLCSSHVYED--DQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELP 77 (226)
Q Consensus 4 P~~~~~-~~sL~~L~L~~c~~-~~~~~~~-~l~sLk~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~ 77 (226)
+..+|. .+.|++|+|++|.- ...|..+ .+-+|++|+|++..+. +.++.+ ...|.+|++.....+..+ .+.
T Consensus 563 s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~----Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN----LKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH----HHhhheeccccccccccccchh
Confidence 444454 79999999999863 4344444 5889999999887663 333333 356888888877665444 122
Q ss_pred -CCCCcceEEeccC
Q 040388 78 -DLNNLKEFKAYDN 90 (226)
Q Consensus 78 -~~~~Lk~L~l~~c 90 (226)
.+++|++|.+..-
T Consensus 639 ~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 639 LELQSLRVLRLPRS 652 (889)
T ss_pred hhcccccEEEeecc
Confidence 2567777776543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.0027 Score=56.95 Aligned_cols=130 Identities=18% Similarity=0.284 Sum_probs=75.8
Q ss_pred CCCccccccCCccEEEecccccccccCccCCCcccEEEecceecC--HHHHHHHHhcCCccceeeeeccCCceEE--ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYED--DQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~ 77 (226)
.+|..+.++..|+.|+|+.+.+...+...++--||.|.++++.++ .+. +..-+.|.+|+.+.|. +..+ .+.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~----ig~~~tl~~ld~s~ne-i~slpsql~ 186 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE----IGLLPTLAHLDVSKNE-IQSLPSQLG 186 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc----cccchhHHHhhhhhhh-hhhchHHhh
Confidence 367788888888889998888776556667777888888888761 122 2244566777776663 2222 234
Q ss_pred CCCCcceEEeccCCCceEEE--EecceeeEEE-eCCCCccccccccCcccCcEEEeeccccCc
Q 040388 78 DLNNLKEFKAYDNFRLQRLH--INGVNVCSID-LASRRTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~--~~~~~L~~L~-~~~~~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
++.+|+.+.+..+. +..+. ...-.|..|+ .++.....++.+...+.|++|-|..|.+..
T Consensus 187 ~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 45566666666553 11110 0122355555 233322234555666677777777665543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.016 Score=50.97 Aligned_cols=58 Identities=22% Similarity=0.118 Sum_probs=26.2
Q ss_pred CCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEEeccC
Q 040388 31 TLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFKAYDN 90 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c 90 (226)
.+.+|..|++..+.+ ..+...+..+++|+.|+++++.--+.-.+..++.|+.|++.+|
T Consensus 93 ~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred cccceeeeeccccch--hhcccchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence 455555666655543 1122224455566666665542111112223344555555555
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.12 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=13.7
Q ss_pred CCcccEEEecceec-CHHHHHHHH
Q 040388 32 LSSLRKLCSSHVYE-DDQVIEDFV 54 (226)
Q Consensus 32 l~sLk~L~L~~~~~-~~~~l~~l~ 54 (226)
+|+|+.|+|++|.- +|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 35666666666653 666665543
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.17 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=13.3
Q ss_pred CCcccEEEecceecCHHHHHHH
Q 040388 32 LSSLRKLCSSHVYEDDQVIEDF 53 (226)
Q Consensus 32 l~sLk~L~L~~~~~~~~~l~~l 53 (226)
+++|++|+|++|.+++++++.+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3567777777777766666554
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.057 Score=42.53 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=35.7
Q ss_pred ccCcccCcEEEeeccc-cCchhHHHHHhcCCCCcEEeccccccceeeccC----ccccceeEEcc
Q 040388 119 VAPCKHLEKLKLSGLY-IIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS----SRCLKKLFFKG 178 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~----~~~L~~L~l~~ 178 (226)
+..++.++.|.+..|. +.|..+..+....++|+.|++++|+.++.-.+- ..+|++|.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3455666666666665 333345555566677888888877776654332 24566666554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.1 Score=45.97 Aligned_cols=81 Identities=20% Similarity=0.077 Sum_probs=54.7
Q ss_pred ccccCCccEEEecccccccccC-ccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcce
Q 040388 7 AFNAESIVVLELQFCKLESLRN-NVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKE 84 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~-~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~ 84 (226)
+...++|+.|++..+.+..... ...+++|+.|+++.+.+ +-..+ ..++.|+.|++.++.--..=.+..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCccchhhhc
Confidence 4556889999999998875434 45689999999999987 33443 334558999988873211112233567777
Q ss_pred EEeccCC
Q 040388 85 FKAYDNF 91 (226)
Q Consensus 85 L~l~~c~ 91 (226)
++++++.
T Consensus 167 l~l~~n~ 173 (414)
T KOG0531|consen 167 LDLSYNR 173 (414)
T ss_pred ccCCcch
Confidence 7777764
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.13 Score=36.96 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCccccc-cCCccEEEeccccccc-ccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cC
Q 040388 3 LPQVAFN-AESIVVLELQFCKLES-LRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LP 77 (226)
Q Consensus 3 lP~~~~~-~~sL~~L~L~~c~~~~-~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~ 77 (226)
+|+.+|. |++|+.+.+...-... ......+++|+.+.+.+. +.. .-.....+|+.|+.+.+.+ ++..+. ..
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccc-cceeeeecccccccccccc--ccccccccccc
Confidence 5666664 6699999987532221 123345678888888763 210 0112366777788887754 333332 23
Q ss_pred CCCCcceEEec
Q 040388 78 DLNNLKEFKAY 88 (226)
Q Consensus 78 ~~~~Lk~L~l~ 88 (226)
.|++|+.+.+.
T Consensus 79 ~~~~l~~i~~~ 89 (129)
T PF13306_consen 79 NCTNLKNIDIP 89 (129)
T ss_dssp T-TTECEEEET
T ss_pred ccccccccccC
Confidence 35666666664
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.024 Score=52.61 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=30.0
Q ss_pred CCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--CceEEecCCCCCcceEEeccC
Q 040388 32 LSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG--GLKCLELPDLNNLKEFKAYDN 90 (226)
Q Consensus 32 l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~l~~l~i~~~~~Lk~L~l~~c 90 (226)
+|.|+.|+|++|.+++-. .+..||.|.+|||+++. .+-.+...+|. |..|.+.++
T Consensus 186 l~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 466777777777653222 34566777777776541 22233334443 555555555
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.015 Score=48.09 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=50.7
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceec-CHHHHHHHHhcCCccceeeeeccCC-------ceEEecCCCCC
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE-DDQVIEDFVAGCPLIEYMHVFDCGG-------LKCLELPDLNN 81 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~-------l~~l~i~~~~~ 81 (226)
-+.|++|.|+-|++........|..||.|.|+.+.+ +-+.+.. +.+.|+|..|.|..++= .+..-+.-+|+
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 356888888888877555556788888888888887 4444444 46778888888876531 11111223578
Q ss_pred cceEEe
Q 040388 82 LKEFKA 87 (226)
Q Consensus 82 Lk~L~l 87 (226)
||+|+=
T Consensus 119 LkKLDn 124 (388)
T KOG2123|consen 119 LKKLDN 124 (388)
T ss_pred chhccC
Confidence 887763
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.03 Score=50.52 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=23.7
Q ss_pred cCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeeccCcc
Q 040388 120 APCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSR 169 (226)
Q Consensus 120 ~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~~~ 169 (226)
++..+|+.|.+..|++.+. +.++. +-.|.+|+++ |.++..+.+...
T Consensus 186 ~~l~slr~l~vrRn~l~~l-p~El~--~LpLi~lDfS-cNkis~iPv~fr 231 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLEDL-PEELC--SLPLIRLDFS-CNKISYLPVDFR 231 (722)
T ss_pred hhHHHHHHHHHhhhhhhhC-CHHHh--CCceeeeecc-cCceeecchhhh
Confidence 4455556666655554332 23332 3445666665 366666665543
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=85.64 E-value=0.67 Score=21.15 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=6.3
Q ss_pred CccEEEecccccc
Q 040388 12 SIVVLELQFCKLE 24 (226)
Q Consensus 12 sL~~L~L~~c~~~ 24 (226)
+|++|++++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666666666643
|
... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=83.42 E-value=1 Score=21.93 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=10.5
Q ss_pred CccEEEeccccccc
Q 040388 12 SIVVLELQFCKLES 25 (226)
Q Consensus 12 sL~~L~L~~c~~~~ 25 (226)
+|++|++++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 47888888887663
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=83.14 E-value=1.3 Score=31.62 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=4.4
Q ss_pred hcCCccceeeee
Q 040388 55 AGCPLIEYMHVF 66 (226)
Q Consensus 55 ~~cp~Le~L~l~ 66 (226)
.+|++|+.+.+.
T Consensus 9 ~~~~~l~~i~~~ 20 (129)
T PF13306_consen 9 YNCSNLESITFP 20 (129)
T ss_dssp TT-TT--EEEET
T ss_pred hCCCCCCEEEEC
Confidence 445555555544
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=82.83 E-value=1.6 Score=22.67 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=17.0
Q ss_pred CcccEEEecceecCHHHHHHHH
Q 040388 33 SSLRKLCSSHVYEDDQVIEDFV 54 (226)
Q Consensus 33 ~sLk~L~L~~~~~~~~~l~~l~ 54 (226)
++|++|+|++|.+.+++...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5788889988888777766654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 226 | |||
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 1e-06 |
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 25/189 (13%), Positives = 56/189 (29%), Gaps = 17/189 (8%)
Query: 3 LPQVAFNAESIVVLELQFCKLES---------LRNNVTLSSLRKLCSSHVYEDDQVIEDF 53
L + + I L ++ ++N +L L + + +E
Sbjct: 156 LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215
Query: 54 VAGCPLIEYMHVFDCGGLK----CLELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLA 109
C + + V D L+ +L ++ + ++N V +
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275
Query: 110 SRRTLSDINVAP----CKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK 165
+ + + KL L + E + K LE L + R +
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE 335
Query: 166 ISSRCLKKL 174
+ ++ K+L
Sbjct: 336 VLAQYCKQL 344
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 226 | |||
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.5 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.44 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.43 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.39 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.39 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.39 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.36 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.36 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.36 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.35 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.34 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.34 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.34 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.31 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.31 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.31 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.31 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.3 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.3 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.3 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.3 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.29 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.29 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.28 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.28 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.27 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.27 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.27 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.26 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.26 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.25 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.25 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.24 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.23 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.22 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.22 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.22 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.21 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.21 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.2 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.2 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.2 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.19 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.18 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.18 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.18 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.17 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.17 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.17 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.16 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.16 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.15 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.15 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.15 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.15 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.15 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.14 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.14 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.13 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.13 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.12 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.09 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.09 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.08 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.08 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.08 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.08 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.07 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.07 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.07 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.06 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.06 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.05 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.04 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.04 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.02 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.01 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.01 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.01 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.01 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.01 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.01 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 98.99 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.99 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.98 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 98.98 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 98.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 98.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 98.93 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.92 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.92 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.91 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.91 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.87 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.86 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.86 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 98.86 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 98.85 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.84 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.84 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 98.83 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.82 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.79 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 98.77 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.77 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.76 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.67 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.66 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.66 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.66 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.65 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.63 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.61 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.59 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.55 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.53 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.53 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.51 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.47 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.46 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.44 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.41 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.41 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.35 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.34 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.33 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.33 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.31 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.28 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.27 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.22 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.18 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.11 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.98 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.91 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.86 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.83 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.81 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.74 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.71 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.7 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.47 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.36 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.11 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.81 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.54 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.18 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.13 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 95.03 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 94.53 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 93.6 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 90.58 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 88.29 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 82.82 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 82.39 |
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-15 Score=123.52 Aligned_cols=185 Identities=13% Similarity=0.121 Sum_probs=129.1
Q ss_pred CCccEEEeccccccc-ccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceE--EecCCCCCcceEEe
Q 040388 11 ESIVVLELQFCKLES-LRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKC--LELPDLNNLKEFKA 87 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~-~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--l~i~~~~~Lk~L~l 87 (226)
+.+++|+++++.+.. .+....+++|++|+++++.+++..+..++.+||+|++|++++|.--.. -.++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 788888888887653 234456899999999999888887888889999999999998842111 13456889999999
Q ss_pred ccCCCce-----EEEEecceeeEEEeCCC-Ccc---ccccccCcc-cCcEEEeecc--ccCchhHHHHHhcCCCCcEEec
Q 040388 88 YDNFRLQ-----RLHINGVNVCSIDLASR-RTL---SDINVAPCK-HLEKLKLSGL--YIIDECPSNQVSKLQFLEYLHI 155 (226)
Q Consensus 88 ~~c~~l~-----~~~~~~~~L~~L~~~~~-~~~---~~~~~~~~~-~L~~L~L~~~--~it~~~~~~l~~~~~~Le~L~l 155 (226)
++|..+. .+...+++|++|++.+. ... ....+..++ +|++|++++| .+++..+...+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 9885333 22235688888885543 111 122356777 8999999988 5776666667778899999999
Q ss_pred cccccceeec---c-CccccceeEEcce---------EEEeCCCcceEEEeec
Q 040388 156 DCCMKLRSAK---I-SSRCLKKLFFKGE---------FMLDTSNLSTFEYQGN 195 (226)
Q Consensus 156 ~~C~~L~~l~---i-~~~~L~~L~l~~~---------~~i~~p~L~sl~~~g~ 195 (226)
++|..++... + ..++|+.|++.+- ..-..|+|+.+...|.
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8886543221 1 2367888888751 1234788888888776
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-14 Score=119.07 Aligned_cols=58 Identities=26% Similarity=0.326 Sum_probs=25.8
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc---CccccceeEEcc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI---SSRCLKKLFFKG 178 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i---~~~~L~~L~l~~ 178 (226)
+..+++|++|++++|.++.. + ..+..+++|+.|++++|.....+.. ..++|+.|++.+
T Consensus 202 l~~l~~L~~L~L~~N~l~~l-~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSAL-G-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCC-C-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred hcCCCCCCEEEccCCCCCcC-c-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 34445555555555554431 1 1234455555555555544333321 113455555543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-13 Score=113.31 Aligned_cols=198 Identities=16% Similarity=0.157 Sum_probs=94.6
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC-----------ceEEe
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG-----------LKCLE 75 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~-----------l~~l~ 75 (226)
+..+++|++|++++|.+...+....+++|++|+++++.+++- . -+.++++|++|++++|.- ++.++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECcCCcccCchhhccCCceeEEE
Confidence 445666777777776654322244566666666666655221 1 145566666666665521 22222
Q ss_pred c------------CCCCCcceEEeccCC--CceEEEEecceeeEEEeCCCC--c--------------------cccccc
Q 040388 76 L------------PDLNNLKEFKAYDNF--RLQRLHINGVNVCSIDLASRR--T--------------------LSDINV 119 (226)
Q Consensus 76 i------------~~~~~Lk~L~l~~c~--~l~~~~~~~~~L~~L~~~~~~--~--------------------~~~~~~ 119 (226)
+ ..+++|+++++++|. .+.. ....++|+++++.+.. . .....+
T Consensus 139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 217 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPV 217 (347)
T ss_dssp CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchh
Confidence 2 123444444444442 0000 0123444444432210 0 000013
Q ss_pred cCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec-cC-ccccceeEEcc-eE-----EEeCCCcceEE
Q 040388 120 APCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK-IS-SRCLKKLFFKG-EF-----MLDTSNLSTFE 191 (226)
Q Consensus 120 ~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~-i~-~~~L~~L~l~~-~~-----~i~~p~L~sl~ 191 (226)
..+++|++|++++|.+++... +..+++|+.|++++| .++.+. +. .++|+.|++.+ .+ .-..|+|+.+.
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLF 293 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred hcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEE
Confidence 445566666666666554322 455666666666664 222222 11 24677777665 11 13357777777
Q ss_pred Eeecceee----cc-ccccceeeeEe
Q 040388 192 YQGNLVSF----SS-NALALSQIILF 212 (226)
Q Consensus 192 ~~g~~~~~----~~-~~~~l~~~~~~ 212 (226)
..++.+.- .. +.+.|+.+.+.
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CcCCcCCCcChhHhhccccCCEEEcc
Confidence 77664211 11 45666666653
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-14 Score=120.54 Aligned_cols=173 Identities=19% Similarity=0.266 Sum_probs=119.3
Q ss_pred CccccccCCccEEEeccccccc--c-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceE--E--ec
Q 040388 4 PQVAFNAESIVVLELQFCKLES--L-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKC--L--EL 76 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~--~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--l--~i 76 (226)
+..++.+++|++|++++|.+.. . .....+++|++|+|++|.+++..... ++.||+|++|++++|..+.. + .+
T Consensus 86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 3446778899999999988642 1 23346899999999999887766555 45689999999999865542 1 13
Q ss_pred CCCCCcceEEeccCCCce-----EEEEecc-eeeEEEeCCCC-----ccccccccCcccCcEEEeeccc-cCchhHHHHH
Q 040388 77 PDLNNLKEFKAYDNFRLQ-----RLHINGV-NVCSIDLASRR-----TLSDINVAPCKHLEKLKLSGLY-IIDECPSNQV 144 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~-----~~~~~~~-~L~~L~~~~~~-----~~~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~ 144 (226)
.++++|++|++++|..+. .....+| +|++|++.+.. ......+..+++|++|++++|. +++..+.. +
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l 243 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-F 243 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-G
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-H
Confidence 457889999998884333 2223467 89998865531 1112234578899999999888 77665554 3
Q ss_pred hcCCCCcEEeccccccceee---cc-CccccceeEEcc
Q 040388 145 SKLQFLEYLHIDCCMKLRSA---KI-SSRCLKKLFFKG 178 (226)
Q Consensus 145 ~~~~~Le~L~l~~C~~L~~l---~i-~~~~L~~L~l~~ 178 (226)
..+++|+.|++++|..+..- .+ ..++|+.|++.+
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 67799999999888644332 12 246788888876
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=116.09 Aligned_cols=173 Identities=18% Similarity=0.208 Sum_probs=126.8
Q ss_pred CCCccccccCCccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe-----
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE----- 75 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~----- 75 (226)
.+|..++.+++|++|+|++|.+...+ ....+++|++|+|+++.++ .+..-+.++++|++|++++|..+..+.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 47899999999999999999986433 3457999999999999885 334447889999999999986554331
Q ss_pred ------cCCCCCcceEEeccCCCceEEE---EecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHh
Q 040388 76 ------LPDLNNLKEFKAYDNFRLQRLH---INGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVS 145 (226)
Q Consensus 76 ------i~~~~~Lk~L~l~~c~~l~~~~---~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~ 145 (226)
+.++++|+.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+....+ ..+.
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~ 250 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP-PIFG 250 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC-CCTT
T ss_pred ccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH-HHhc
Confidence 2237899999999884 33221 24678999985442 11122246788899999999988766543 3357
Q ss_pred cCCCCcEEeccccccceeeccC---ccccceeEEcc
Q 040388 146 KLQFLEYLHIDCCMKLRSAKIS---SRCLKKLFFKG 178 (226)
Q Consensus 146 ~~~~Le~L~l~~C~~L~~l~i~---~~~L~~L~l~~ 178 (226)
.+++|+.|++++|..++.+... .++|+.|++.+
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 7899999999998877766532 25678888776
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=110.08 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=59.4
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEe
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKA 87 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l 87 (226)
.+++|++|++++|.+...+....+++|++|+++++.+++-. . +.++++|++|++++|. +..+ .+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS--P-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccch--h-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEEC
Confidence 57899999999999875455567999999999999884322 1 7899999999999883 2222 2455677777777
Q ss_pred ccCC
Q 040388 88 YDNF 91 (226)
Q Consensus 88 ~~c~ 91 (226)
++|.
T Consensus 118 ~~n~ 121 (347)
T 4fmz_A 118 NEDN 121 (347)
T ss_dssp TTSC
T ss_pred cCCc
Confidence 6664
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-13 Score=121.52 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=97.2
Q ss_pred ccCCccEEEecccccccc--cCc-cCCCcccEEEecce-ecCHHHHHHHHhcCCccceeeeeccC---------------
Q 040388 9 NAESIVVLELQFCKLESL--RNN-VTLSSLRKLCSSHV-YEDDQVIEDFVAGCPLIEYMHVFDCG--------------- 69 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~--~~~-~~l~sLk~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~--------------- 69 (226)
.+++|++|++++|.+... ... ..+++|++|+|++| .+++..+..+..+||+|++|++++|.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 567888888888876421 111 15788888888888 44777788888888888888888774
Q ss_pred --CceEEecCC----------------CCCcceEEeccCCCceE---EEEecceeeEEEeC-------------------
Q 040388 70 --GLKCLELPD----------------LNNLKEFKAYDNFRLQR---LHINGVNVCSIDLA------------------- 109 (226)
Q Consensus 70 --~l~~l~i~~----------------~~~Lk~L~l~~c~~l~~---~~~~~~~L~~L~~~------------------- 109 (226)
+|+.+++++ |++|++|++++|..+.. +...+++|++|+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 233333322 24444444444421110 00012333333210
Q ss_pred ------------CC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccccc---ceeeccCccccce
Q 040388 110 ------------SR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMK---LRSAKISSRCLKK 173 (226)
Q Consensus 110 ------------~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~---L~~l~i~~~~L~~ 173 (226)
+. ..........+++|++|++++|.+++..+..+...+++|+.|++.+|.. +..+.-..++|+.
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCE
Confidence 00 0000111225788999999988888777777778889999999887721 1111112355666
Q ss_pred eEE
Q 040388 174 LFF 176 (226)
Q Consensus 174 L~l 176 (226)
|++
T Consensus 343 L~L 345 (594)
T 2p1m_B 343 LRV 345 (594)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-13 Score=115.12 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=61.2
Q ss_pred CCCCcceEEeccCCCceEEEE----ecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 78 DLNNLKEFKAYDNFRLQRLHI----NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~~----~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
++++|++|++++|..++.+.. ..++|++|++.+........+..+++|++|++++|.+++... ..+..+++|+.|
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 247 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKL 247 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG-GGGTTCTTCCEE
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc-ccccCccCCCEE
Confidence 456666666666554444332 245666666443211111134566677777777777665432 334566777777
Q ss_pred eccccccceeecc---C-ccccceeEEcc-e-------EEEeCCCcceEEEeec
Q 040388 154 HIDCCMKLRSAKI---S-SRCLKKLFFKG-E-------FMLDTSNLSTFEYQGN 195 (226)
Q Consensus 154 ~l~~C~~L~~l~i---~-~~~L~~L~l~~-~-------~~i~~p~L~sl~~~g~ 195 (226)
++.++. ++.+.. . .++|+.|++.+ . ..-..++|+.+...++
T Consensus 248 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 248 WVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred EeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 777642 233321 1 24566666665 1 1123466666666665
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=112.91 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=58.3
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFK 86 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~ 86 (226)
+..+++|++|++++|.+...+ ...+++|++|+++++.+++-. +.++++|++|++++| .+..+.++.+++|++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~ 133 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLN 133 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEE
T ss_pred hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEE
Confidence 334444555555554443211 223445555555554442211 344455555555544 12222334445555555
Q ss_pred eccCCCceEEEE-ecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 87 AYDNFRLQRLHI-NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 87 l~~c~~l~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
+++|. +..+.+ ..++|++|+..+......+.+..+++|++|++++|.+++.. +..+++|+.|++++
T Consensus 134 l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 134 CARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDT 200 (457)
T ss_dssp CTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCS
T ss_pred CCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec----cccCCCCCEEECcC
Confidence 55442 211111 23444554432211111123344555555555555554421 23445555555444
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=122.05 Aligned_cols=154 Identities=18% Similarity=0.047 Sum_probs=78.7
Q ss_pred CccccccCCccEEEecccccc--ccc--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--e--
Q 040388 4 PQVAFNAESIVVLELQFCKLE--SLR--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--E-- 75 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~--~~~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~-- 75 (226)
|..+..+++|++|+|++|.+. .+. ....+++|++|+|+++.++......+...+++|++|++++|.--... .
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 345555566666666666543 111 22345666666666655422111112244555666666555321110 1
Q ss_pred -cCCCCCcceEEeccCCCceEEE-EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 76 -LPDLNNLKEFKAYDNFRLQRLH-INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 76 -i~~~~~Lk~L~l~~c~~l~~~~-~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
+.++++|++|++++|..-.... ..+++|++|++.+. ....+ .+..+++|++|++++|.+++..+. .+..+++|+
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~ 250 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR-AISTCTELK 250 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCC-BCTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCC
T ss_pred hhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCc-ccccCCCCCEEECcCCcCCCcccH-HHhcCCCCC
Confidence 4456666666666663110001 23566777774432 11111 256677777777777777655433 346677777
Q ss_pred EEeccccc
Q 040388 152 YLHIDCCM 159 (226)
Q Consensus 152 ~L~l~~C~ 159 (226)
.|++++|.
T Consensus 251 ~L~Ls~n~ 258 (768)
T 3rgz_A 251 LLNISSNQ 258 (768)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 77777663
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=108.03 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=27.3
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+++|++|++++|.+...+....+++|++|+|+++.+++-. . +.++++|++|++++|
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGN 95 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCC
Confidence 3455555555555443233334555555555555542211 1 445555555555554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=114.95 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=120.5
Q ss_pred CCcccccc----CCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEec
Q 040388 3 LPQVAFNA----ESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLEL 76 (226)
Q Consensus 3 lP~~~~~~----~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i 76 (226)
+|..+... ++|++|+|++|.+... .....+++|++|+|++|.+++.. . +.++++|+.|++++| .+..+..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l~~ 97 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNN-YVQELLV 97 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSS-EEEEEEE
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCC-cCCCCCC
Confidence 45555544 3899999999987632 23457899999999999873211 1 778999999999987 4444432
Q ss_pred CCCCCcceEEeccCCCceEEE-EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 77 PDLNNLKEFKAYDNFRLQRLH-INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~~-~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
.++|+.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++..+..+...+++|+.|
T Consensus 98 --~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 98 --GPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp --CTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred --CCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 3788888888884 33322 23578888885443 222233456778888888888888776555555577888888
Q ss_pred eccccccceeec-c-CccccceeEEcc-e---E---EEeCCCcceEEEeecc
Q 040388 154 HIDCCMKLRSAK-I-SSRCLKKLFFKG-E---F---MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 154 ~l~~C~~L~~l~-i-~~~~L~~L~l~~-~---~---~i~~p~L~sl~~~g~~ 196 (226)
++++|. ++.+. . ..++|+.|++.+ . + ....|+|+.+...++.
T Consensus 175 ~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 175 NLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp ECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred ecCCCc-cccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 888753 22222 1 134566666665 1 1 1234566666665553
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=116.98 Aligned_cols=190 Identities=17% Similarity=0.117 Sum_probs=94.2
Q ss_pred cccccCCccEEEecccccccc---cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeec----------cCCce
Q 040388 6 VAFNAESIVVLELQFCKLESL---RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFD----------CGGLK 72 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~---~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~----------c~~l~ 72 (226)
.+..+++|++|++++|.+... .....+++|++|++. ..+++..+..+..+||+|++|++++ |..+.
T Consensus 288 ~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 333445555555555553210 011245555555555 2234444555555555555555553 33322
Q ss_pred EEe----cCCCCCcceEEeccCC----CceEEEEecceeeEEEeC-----CCCcc------ccccccCcccCcEEEeecc
Q 040388 73 CLE----LPDLNNLKEFKAYDNF----RLQRLHINGVNVCSIDLA-----SRRTL------SDINVAPCKHLEKLKLSGL 133 (226)
Q Consensus 73 ~l~----i~~~~~Lk~L~l~~c~----~l~~~~~~~~~L~~L~~~-----~~~~~------~~~~~~~~~~L~~L~L~~~ 133 (226)
... ..+|++|++|+++.+. .+..+.-.+++|++|++. +.... ....+.+|++|++|++++|
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 110 1125677777774332 111111135667777642 11100 0011345677777777654
Q ss_pred c--cCchhHHHHHhcCCCCcEEecccccc----ceeeccCccccceeEEcc-e--------EEEeCCCcceEEEeecc
Q 040388 134 Y--IIDECPSNQVSKLQFLEYLHIDCCMK----LRSAKISSRCLKKLFFKG-E--------FMLDTSNLSTFEYQGNL 196 (226)
Q Consensus 134 ~--it~~~~~~l~~~~~~Le~L~l~~C~~----L~~l~i~~~~L~~L~l~~-~--------~~i~~p~L~sl~~~g~~ 196 (226)
. +++..+..+...+++|+.|++++|.- +..+.-..++|++|++++ . ..-..|+|+.+...++.
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 3 66666666666677777777776531 111112335677777765 1 11246777777777664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=113.88 Aligned_cols=182 Identities=18% Similarity=0.157 Sum_probs=87.5
Q ss_pred CCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC-------------CceEEe
Q 040388 11 ESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG-------------GLKCLE 75 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~-------------~l~~l~ 75 (226)
+++++|+|++|.+... .....+++|++|+|+++.++.-. ...+.++++|++|++++|. +|+.++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4555666666554421 12234556666666555542110 1123445555555555541 011111
Q ss_pred -------------cCCCCCcceEEeccCCCceEEEE----ecceeeEEEeCCCCccccccccCcccCcEEEeeccccCch
Q 040388 76 -------------LPDLNNLKEFKAYDNFRLQRLHI----NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDE 138 (226)
Q Consensus 76 -------------i~~~~~Lk~L~l~~c~~l~~~~~----~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~ 138 (226)
+.++++|++|++++|..+..+.. ..++|++|++.+........+..+++|++|++++|.+++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 22345566666665544443321 2456666664332111111345566677777777766553
Q ss_pred hHHHHHhcCCCCcEEeccccccceeecc----CccccceeEEcc-eE-------EEeCCCcceEEEeec
Q 040388 139 CPSNQVSKLQFLEYLHIDCCMKLRSAKI----SSRCLKKLFFKG-EF-------MLDTSNLSTFEYQGN 195 (226)
Q Consensus 139 ~~~~l~~~~~~Le~L~l~~C~~L~~l~i----~~~~L~~L~l~~-~~-------~i~~p~L~sl~~~g~ 195 (226)
.. ..+..+++|+.|++.++ .++.+.. ..++|+.|++.+ .+ .-..++|+.+...++
T Consensus 223 ~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 223 RP-GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CT-TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred Ch-hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 22 23456677777777664 2333321 124566666665 11 122466777666665
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-12 Score=107.52 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=37.0
Q ss_pred cccccCCccEEEecccccccc-cC-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 6 VAFNAESIVVLELQFCKLESL-RN-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~-~~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+..+++|++|++++|.+... +. ...+++|++|+|+++.++. ....++.++++|++|++++|
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCC
Confidence 445567777777777776532 22 2457777777777776531 11122456677777777765
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-12 Score=106.00 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=111.4
Q ss_pred ccCCccEEEeccccccccc--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEE
Q 040388 9 NAESIVVLELQFCKLESLR--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFK 86 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~ 86 (226)
.+++|++|++++|.+.... ....+++|++|+|+++.+++.. . +.++++|++|++++|. +..+. .+++|+.|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc--CCCCcCEEE
Confidence 3567888888888876321 2346888888888888763211 1 6778888888888873 44333 237788888
Q ss_pred eccCCCceEEEE-ecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccccccee
Q 040388 87 AYDNFRLQRLHI-NGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRS 163 (226)
Q Consensus 87 l~~c~~l~~~~~-~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~ 163 (226)
+++|. +..+.. ..++|++|++.+. .......+..+++|++|++++|.+++..+..+...+++|+.|+++++. ++.
T Consensus 106 l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 183 (317)
T 3o53_A 106 AANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (317)
T ss_dssp CCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred CCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence 87774 333322 3577888885442 222233456677888888888887765444555567888888887753 233
Q ss_pred ecc--CccccceeEEcc-e---E---EEeCCCcceEEEeecc
Q 040388 164 AKI--SSRCLKKLFFKG-E---F---MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 164 l~i--~~~~L~~L~l~~-~---~---~i~~p~L~sl~~~g~~ 196 (226)
+.- ..++|+.|++.+ . + ....|+|+.+...++.
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc
Confidence 221 134566666665 1 1 1234666666665553
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=112.77 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=39.4
Q ss_pred cccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHH-HHHhcCCccceeeeecc
Q 040388 6 VAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIE-DFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~-~l~~~cp~Le~L~l~~c 68 (226)
.+..+++|++|+|++|.+... ....++++|++|+|++|.+++..+. ..+.++++|++|++++|
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence 445677788888887776421 2334577777777777776443322 22556677777777765
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=108.48 Aligned_cols=80 Identities=14% Similarity=0.175 Sum_probs=41.9
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEF 85 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L 85 (226)
+..+++|++|++++|.+...+....+++|++|+++++.+++.. . +.++++|++|++++|. +..+ .+.++++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEE
Confidence 4456677777777766543222445666666666666552211 1 5566666666666552 1111 13344555555
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
++++|
T Consensus 140 ~l~~n 144 (466)
T 1o6v_A 140 ELSSN 144 (466)
T ss_dssp EEEEE
T ss_pred ECCCC
Confidence 55444
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.3e-12 Score=103.52 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=115.5
Q ss_pred cccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcce
Q 040388 6 VAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKE 84 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~ 84 (226)
.+..+++|++|++++|.+...+....+++|++|+|+++.+++- . -+.++++|++|++++|.- ..+ .+.++++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCCCC-CCchhhcCCCCCCE
Confidence 4667899999999999886433356799999999999988432 1 367899999999998842 222 3677899999
Q ss_pred EEeccCCCceEE--EEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccce
Q 040388 85 FKAYDNFRLQRL--HINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLR 162 (226)
Q Consensus 85 L~l~~c~~l~~~--~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~ 162 (226)
|++++|. +..+ ....++|++|++.+........+..+++|++|++++|.+++... +..+++|+.|++++|.- +
T Consensus 134 L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l-~ 208 (308)
T 1h6u_A 134 LYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQI-S 208 (308)
T ss_dssp EECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCC-C
T ss_pred EECCCCc-cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCcc-C
Confidence 9999885 2211 12467888888554311111126788899999999998876432 57889999999988632 2
Q ss_pred ee-ccC-ccccceeEEcc
Q 040388 163 SA-KIS-SRCLKKLFFKG 178 (226)
Q Consensus 163 ~l-~i~-~~~L~~L~l~~ 178 (226)
.+ .+. .++|+.|++.+
T Consensus 209 ~~~~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 209 DVSPLANTSNLFIVTLTN 226 (308)
T ss_dssp BCGGGTTCTTCCEEEEEE
T ss_pred ccccccCCCCCCEEEccC
Confidence 22 222 35788888876
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-12 Score=119.00 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=92.4
Q ss_pred CCc--cccccCCccEEEeccccccc-ccC--ccCCCcccEEEecceecCHHHHH--HHHhcCCccceeeeeccCCceEEe
Q 040388 3 LPQ--VAFNAESIVVLELQFCKLES-LRN--NVTLSSLRKLCSSHVYEDDQVIE--DFVAGCPLIEYMHVFDCGGLKCLE 75 (226)
Q Consensus 3 lP~--~~~~~~sL~~L~L~~c~~~~-~~~--~~~l~sLk~L~L~~~~~~~~~l~--~l~~~cp~Le~L~l~~c~~l~~l~ 75 (226)
+|. .+..+++|++|++++|.+.. .+. ...+++|++|+|+++.+++.... ..+.+|++|++|++++|.-.....
T Consensus 116 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 466 78899999999999998752 122 25789999999999988433222 237889999999999874322223
Q ss_pred cCCCCCcceEEeccCCC---ceEEEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCC
Q 040388 76 LPDLNNLKEFKAYDNFR---LQRLHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFL 150 (226)
Q Consensus 76 i~~~~~Lk~L~l~~c~~---l~~~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~L 150 (226)
...+++|++|++++|.. +.. ....++|++|++.+. .......+..+++|++|++++|.+++..+. ..+++|
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L 271 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSL 271 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC---CCCTTC
T ss_pred cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc---cccCCC
Confidence 45667777777777651 111 123566777764432 111122344555666666666555432211 144555
Q ss_pred cEEecccc
Q 040388 151 EYLHIDCC 158 (226)
Q Consensus 151 e~L~l~~C 158 (226)
+.|++.+|
T Consensus 272 ~~L~L~~n 279 (768)
T 3rgz_A 272 QYLSLAEN 279 (768)
T ss_dssp CEEECCSS
T ss_pred CEEECcCC
Confidence 55555543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-12 Score=117.47 Aligned_cols=170 Identities=16% Similarity=0.121 Sum_probs=109.8
Q ss_pred ccccCCccEEEeccccccc--ccCccCCCcccEEEecc-----------eecCHHHHHHHHhcCCccceeeeeccCCceE
Q 040388 7 AFNAESIVVLELQFCKLES--LRNNVTLSSLRKLCSSH-----------VYEDDQVIEDFVAGCPLIEYMHVFDCGGLKC 73 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~--~~~~~~l~sLk~L~L~~-----------~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~ 73 (226)
+..+++|++|+++++.... ......+++|++|++++ +.+++..+..+..+||+|++|++ +|..+..
T Consensus 314 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~ 392 (592)
T 3ogk_B 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITN 392 (592)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCH
T ss_pred HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccH
Confidence 4578999999999543321 11223589999999994 45588889999999999999999 4444321
Q ss_pred E---ecC-CCCCcceEEecc---CCCceEE---------EEecceeeEEEe---CCCCcc--ccccccCcccCcEEEeec
Q 040388 74 L---ELP-DLNNLKEFKAYD---NFRLQRL---------HINGVNVCSIDL---ASRRTL--SDINVAPCKHLEKLKLSG 132 (226)
Q Consensus 74 l---~i~-~~~~Lk~L~l~~---c~~l~~~---------~~~~~~L~~L~~---~~~~~~--~~~~~~~~~~L~~L~L~~ 132 (226)
- .+. +|++|++|+++. |..+++. ...+++|++|++ .|.... .......+++|++|++++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 1 122 267888888873 3334332 223678888885 221000 111123577888888888
Q ss_pred cccCchhHHHHHhcCCCCcEEeccccccceee-----ccCccccceeEEcc
Q 040388 133 LYIIDECPSNQVSKLQFLEYLHIDCCMKLRSA-----KISSRCLKKLFFKG 178 (226)
Q Consensus 133 ~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l-----~i~~~~L~~L~l~~ 178 (226)
|.+++..+..+..++++|+.|++++|. +..- .-..++|++|++.+
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEES
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcC
Confidence 888776666777778888888888876 3221 11235678888775
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=116.96 Aligned_cols=186 Identities=17% Similarity=0.110 Sum_probs=86.9
Q ss_pred ccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-----------
Q 040388 7 AFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL----------- 74 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l----------- 74 (226)
+..+++|++|++++|.+... .....+++|++|+++++.+++.. ...+.++|+|++|++++|.....+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 34466777777777665432 23345667777777766653211 122455566666666655321111
Q ss_pred ------------------ecCCCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--C-ccccccccCcccCcEEE
Q 040388 75 ------------------ELPDLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--R-TLSDINVAPCKHLEKLK 129 (226)
Q Consensus 75 ------------------~i~~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~-~~~~~~~~~~~~L~~L~ 129 (226)
.+.++++|++|++++|. +..+. ...++|++|++.+. . ......+..+++|++|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 12334455555555442 11111 02345555553322 0 00111244556666666
Q ss_pred eeccccCchhHHHHHhcCCCCcEEeccccccce-ee----cc-CccccceeEEcc-e---E----EEeCCCcceEEEeec
Q 040388 130 LSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLR-SA----KI-SSRCLKKLFFKG-E---F----MLDTSNLSTFEYQGN 195 (226)
Q Consensus 130 L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~-~l----~i-~~~~L~~L~l~~-~---~----~i~~p~L~sl~~~g~ 195 (226)
+++|.++...+ ..+..+++|+.|++++|.--. .+ .+ ..++|+.|++.+ . + .-..|+|+.+...++
T Consensus 432 l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 432 LSHSLLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CTTCCCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCcCH-HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 66665544322 223456666666666653211 01 01 124566666654 1 1 122456666666555
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-12 Score=108.55 Aligned_cols=86 Identities=22% Similarity=0.194 Sum_probs=56.0
Q ss_pred CCCccccccCCccEEEecccccccccC--ccCCCcccEEEecceecCHH-HHHHHHhcCCccceeeeeccCCceEE--ec
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRN--NVTLSSLRKLCSSHVYEDDQ-VIEDFVAGCPLIEYMHVFDCGGLKCL--EL 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~--~~~l~sLk~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~c~~l~~l--~i 76 (226)
.+|..++ ++|++|++++|.+...+. ...+++|++|+|+++.++.. .......++++|++|++++|. +..+ .+
T Consensus 21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~ 97 (306)
T 2z66_A 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF 97 (306)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhc
Confidence 3565444 689999999998764332 35789999999999887421 111224468999999998874 2222 23
Q ss_pred CCCCCcceEEeccC
Q 040388 77 PDLNNLKEFKAYDN 90 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c 90 (226)
.++++|++|+++++
T Consensus 98 ~~l~~L~~L~l~~n 111 (306)
T 2z66_A 98 LGLEQLEHLDFQHS 111 (306)
T ss_dssp ETCTTCCEEECTTS
T ss_pred CCCCCCCEEECCCC
Confidence 44566666666655
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-12 Score=105.66 Aligned_cols=188 Identities=15% Similarity=0.109 Sum_probs=124.7
Q ss_pred CCccccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELP 77 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~ 77 (226)
+|..+ .++|++|++++|.+... .....+++|++|+++++.+++.. ...+.++++|++|++++|..+..+ .+.
T Consensus 26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 45433 36899999999987632 23457899999999998774321 223577899999999998655544 355
Q ss_pred CCCCcceEEeccCCCceEE----EEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 78 DLNNLKEFKAYDNFRLQRL----HINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~----~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
++++|++|++++|. +..+ ....++|++|++.+. .......+..+++|++|++++|.++... ...+..+++|+
T Consensus 103 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 180 (285)
T 1ozn_A 103 GLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLD 180 (285)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCC
T ss_pred CCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccccC
Confidence 67899999998884 2222 113578888885543 1112223567888999999998877532 23356788999
Q ss_pred EEeccccccceeec---cC-ccccceeEEcc-e---E----EEeCCCcceEEEeecc
Q 040388 152 YLHIDCCMKLRSAK---IS-SRCLKKLFFKG-E---F----MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 152 ~L~l~~C~~L~~l~---i~-~~~L~~L~l~~-~---~----~i~~p~L~sl~~~g~~ 196 (226)
.|+++++. ++.+. +. .++|+.|++.+ . + .-..|+|+.+...++.
T Consensus 181 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 181 RLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 99998864 33331 11 25788888876 1 1 1235788888887774
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-12 Score=112.24 Aligned_cols=199 Identities=12% Similarity=0.052 Sum_probs=106.7
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFK 86 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~ 86 (226)
+..+++|++|++++|.+...+....+++|++|++++|.+ ..+..+ .+|.|++|++++|..+....+..+++|++|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--KQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--SSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC--cccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 445678888888888775444445677888888888876 222232 7788888888877665555555666667666
Q ss_pred eccCCCceEEE------EecceeeEEEeCCC-------------------------Ccccc-ccccCcccCcEEEeeccc
Q 040388 87 AYDNFRLQRLH------INGVNVCSIDLASR-------------------------RTLSD-INVAPCKHLEKLKLSGLY 134 (226)
Q Consensus 87 l~~c~~l~~~~------~~~~~L~~L~~~~~-------------------------~~~~~-~~~~~~~~L~~L~L~~~~ 134 (226)
+++|. +..+. ...++|++|++.+. ..... ..+..+++|++|++++|.
T Consensus 357 ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 66663 22221 12345555553221 00001 123445555555555555
Q ss_pred cCchhHHHHHhcCCCCcEEecccccccee-ec--c-CccccceeEEcc-e---E----EEeCCCcceEEEeecce----e
Q 040388 135 IIDECPSNQVSKLQFLEYLHIDCCMKLRS-AK--I-SSRCLKKLFFKG-E---F----MLDTSNLSTFEYQGNLV----S 198 (226)
Q Consensus 135 it~~~~~~l~~~~~~Le~L~l~~C~~L~~-l~--i-~~~~L~~L~l~~-~---~----~i~~p~L~sl~~~g~~~----~ 198 (226)
++...+ ..+..+++|+.|++++|..-.. +. + ..++|+.|++.+ . . .-..++|+++...++.+ |
T Consensus 436 l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 436 TKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCccch-hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 443322 2234556666666665532211 11 1 124677777665 1 1 12346777777766642 2
Q ss_pred ecc-ccccceeeeE
Q 040388 199 FSS-NALALSQIIL 211 (226)
Q Consensus 199 ~~~-~~~~l~~~~~ 211 (226)
... +.+.|+.+.+
T Consensus 515 ~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 515 SHYNQLYSLSTLDC 528 (606)
T ss_dssp GGTTTCTTCCEEEC
T ss_pred HHccCCCcCCEEEC
Confidence 222 4455666555
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.2e-12 Score=109.38 Aligned_cols=181 Identities=16% Similarity=0.124 Sum_probs=82.9
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC-----------ceEEe
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG-----------LKCLE 75 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~-----------l~~l~ 75 (226)
+..+++|++|++++|.+...+....+++|++|+++++.+++... +..+++|++|++++|.- ++.++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 249 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEE
Confidence 34455666666666655432223345566666666555422110 34455555555555421 11111
Q ss_pred -----------cCCCCCcceEEeccCC--CceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHH
Q 040388 76 -----------LPDLNNLKEFKAYDNF--RLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSN 142 (226)
Q Consensus 76 -----------i~~~~~Lk~L~l~~c~--~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~ 142 (226)
+.++++|+.|++++|. .+.. ....++|++|++.+........+..+++|++|++++|.+++...
T Consensus 250 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-- 326 (466)
T 1o6v_A 250 LANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-- 326 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--
T ss_pred CCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--
Confidence 2233444444444442 1111 01234555555333210001114455666666666666655332
Q ss_pred HHhcCCCCcEEeccccccceeec-c-CccccceeEEcc-e-----EEEeCCCcceEEEeec
Q 040388 143 QVSKLQFLEYLHIDCCMKLRSAK-I-SSRCLKKLFFKG-E-----FMLDTSNLSTFEYQGN 195 (226)
Q Consensus 143 l~~~~~~Le~L~l~~C~~L~~l~-i-~~~~L~~L~l~~-~-----~~i~~p~L~sl~~~g~ 195 (226)
+..+++|+.|++.+|. ++.+. + ..++|+.|++.+ . .....|+|+.+...++
T Consensus 327 -~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp -GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred -hccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence 3456666666666652 22221 1 124566666664 1 1233466666666554
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-11 Score=104.97 Aligned_cols=38 Identities=24% Similarity=0.116 Sum_probs=17.5
Q ss_pred cCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 120 APCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 120 ~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
..+++|++|++++|.+++... ..+..+++|+.|++++|
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDD-NAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred ccCCCCCEEECCCCcccccCh-hHhcCcccCCEEECCCC
Confidence 344455555555555443221 12234455555555553
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-12 Score=116.99 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=102.2
Q ss_pred ccccccCCccEEEecccccccc---cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeec--------------
Q 040388 5 QVAFNAESIVVLELQFCKLESL---RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFD-------------- 67 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~~---~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~-------------- 67 (226)
..+..+++|++|++++|.+... .....+++|++|+++++ +++..+..+..+||+|++|++.+
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 3333578888888888875421 11236788888888887 66777777777888888888833
Q ss_pred ---------cCCceEEecC--------------CCCCcceEEec-----cCCCceEE---------EEecceeeEEEeCC
Q 040388 68 ---------CGGLKCLELP--------------DLNNLKEFKAY-----DNFRLQRL---------HINGVNVCSIDLAS 110 (226)
Q Consensus 68 ---------c~~l~~l~i~--------------~~~~Lk~L~l~-----~c~~l~~~---------~~~~~~L~~L~~~~ 110 (226)
|++|+.+.+. .|++|++|+++ +|..+... ...+++|++|++.+
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 2334444221 25666666666 33333311 11346666666544
Q ss_pred CCcc--ccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccccccee-----eccCccccceeEEcc
Q 040388 111 RRTL--SDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRS-----AKISSRCLKKLFFKG 178 (226)
Q Consensus 111 ~~~~--~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~-----l~i~~~~L~~L~l~~ 178 (226)
.... .......+++|++|++++|.+++..+..+...+++|+.|++.+|.. .. +.-..++|+.|++.+
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEES
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeC
Confidence 2100 0001123667778888777777766666666778888888877754 21 111235677777765
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-12 Score=112.29 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=39.3
Q ss_pred CCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L 85 (226)
+++++|+|++|.+... .....+++|++|+|+++.+++-. ...+.++++|++|++++|. +..+ .+.++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEE
Confidence 4566666666665421 22335666666666666552211 1124556666666666552 2211 12344555555
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
++++|
T Consensus 110 ~Ls~n 114 (477)
T 2id5_A 110 DISEN 114 (477)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 55554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.2e-12 Score=109.85 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=117.4
Q ss_pred CccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcc
Q 040388 4 PQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLK 83 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk 83 (226)
|..+..+++|++|++++|.+...+....+++|++|+|+++.+++- . +..+++|++|++++|. +..+.++++++|+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~-l~~~~~~~l~~L~ 109 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNK-LTNLDVTPLTKLT 109 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSC-CSCCCCTTCTTCC
T ss_pred ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCC-CceeecCCCCcCC
Confidence 345667899999999999886444556799999999999988442 1 6789999999999984 4445688899999
Q ss_pred eEEeccCCCceEEEE-ecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccce
Q 040388 84 EFKAYDNFRLQRLHI-NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLR 162 (226)
Q Consensus 84 ~L~l~~c~~l~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~ 162 (226)
+|++++|. +..+.+ ..++|++|+..+.. ...+.++.+++|++|++++|...... . +..+++|+.|+++++ .++
T Consensus 110 ~L~L~~N~-l~~l~~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n-~l~ 183 (457)
T 3bz5_A 110 YLNCDTNK-LTKLDVSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKL--D-VTPQTQLTTLDCSFN-KIT 183 (457)
T ss_dssp EEECCSSC-CSCCCCTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCC--C-CTTCTTCCEEECCSS-CCC
T ss_pred EEECCCCc-CCeecCCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccccc--c-cccCCcCCEEECCCC-ccc
Confidence 99999984 333333 46889999965431 11235778999999999999533322 1 467899999999875 333
Q ss_pred eeccC-ccccceeEEcc
Q 040388 163 SAKIS-SRCLKKLFFKG 178 (226)
Q Consensus 163 ~l~i~-~~~L~~L~l~~ 178 (226)
.+.+. .++|+.|++.+
T Consensus 184 ~l~l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 184 ELDVSQNKLLNRLNCDT 200 (457)
T ss_dssp CCCCTTCTTCCEEECCS
T ss_pred eeccccCCCCCEEECcC
Confidence 33332 23455555543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=108.34 Aligned_cols=166 Identities=17% Similarity=0.081 Sum_probs=99.1
Q ss_pred ccCCccEEEecccccccc-cC-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcc
Q 040388 9 NAESIVVLELQFCKLESL-RN-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLK 83 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~-~~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk 83 (226)
.+++|++|+|++|.+... +. ...+++|++|+|+++.++.- ....+.++++|++|++++|..+..+. +.++++|+
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 344444444444444321 11 22345555555555544210 01124455666666666665555553 44678999
Q ss_pred eEEeccCCCceEEE--EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 84 EFKAYDNFRLQRLH--INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 84 ~L~l~~c~~l~~~~--~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.++.... ..+..+++|+.|+++++
T Consensus 200 ~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N- 276 (452)
T 3zyi_A 200 YLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHN- 276 (452)
T ss_dssp EEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS-
T ss_pred EEECCCCc-ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCC-
Confidence 99999885 22221 14578999996553 22223356788999999999998876533 33578899999999986
Q ss_pred cceeecc----CccccceeEEcc
Q 040388 160 KLRSAKI----SSRCLKKLFFKG 178 (226)
Q Consensus 160 ~L~~l~i----~~~~L~~L~l~~ 178 (226)
.++.+.. ..++|+.|++.+
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEECCS
T ss_pred cCCccChHHhccccCCCEEEccC
Confidence 4444432 135788888876
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=110.58 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=38.2
Q ss_pred cccccCCccEEEecccccccc-cC-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 6 VAFNAESIVVLELQFCKLESL-RN-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~-~~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+..+++|++|+|++|.+... +. ...+++|++|+|+++.++. ....++.++++|+.|++++|
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCC
Confidence 555677777777777776532 22 2457777777777776631 11223456677777777766
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-12 Score=103.32 Aligned_cols=178 Identities=19% Similarity=0.164 Sum_probs=124.8
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceE
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEF 85 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L 85 (226)
..++|++|.+++|.+...+....+++|++|+++++.+++- . -+.++++|++|++++|. +..+. +.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEE
Confidence 5678999999999876545556799999999999988431 1 36788999999999873 33332 4668899999
Q ss_pred EeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 86 KAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 86 ~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++.. ...+..+++|+.|++.++.
T Consensus 115 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 115 VLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCc
Confidence 999885 33222 13578999985543 2112223567889999999999887543 3445778999999999864
Q ss_pred cceeec---cC-ccccceeEEcc-eEEEeCCCcceEEEe
Q 040388 160 KLRSAK---IS-SRCLKKLFFKG-EFMLDTSNLSTFEYQ 193 (226)
Q Consensus 160 ~L~~l~---i~-~~~L~~L~l~~-~~~i~~p~L~sl~~~ 193 (226)
++.+. +. .++|+.|++.+ .+.-++|+++.+...
T Consensus 193 -l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~ 230 (272)
T 3rfs_A 193 -LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230 (272)
T ss_dssp -CSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred -CCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHH
Confidence 33332 12 35788888877 455567777765443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=110.28 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=55.3
Q ss_pred CccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC--ceEEecCCCCCcceEEe
Q 040388 12 SIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG--LKCLELPDLNNLKEFKA 87 (226)
Q Consensus 12 sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~--l~~l~i~~~~~Lk~L~l 87 (226)
+|++|++++|.+... + ....+++|++|+++++.++ .+..-+.++++|++|++++|.- +....+.++++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 799999999987643 2 2457899999999999874 2222367889999999998842 11123445667777777
Q ss_pred ccCC
Q 040388 88 YDNF 91 (226)
Q Consensus 88 ~~c~ 91 (226)
++|.
T Consensus 333 ~~n~ 336 (606)
T 3t6q_A 333 KGNT 336 (606)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 6664
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=102.77 Aligned_cols=150 Identities=12% Similarity=0.109 Sum_probs=91.7
Q ss_pred cccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE----ecCCC
Q 040388 6 VAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL----ELPDL 79 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l----~i~~~ 79 (226)
.+..+++|++|++++|.+... + ....+++|++|+|+++.++. .....+.++++|++|+++++. +..+ .+.++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCC-CcccCchhhhccC
Confidence 344566777777777765422 1 23456777777777776632 112235667777777777662 2121 24457
Q ss_pred CCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 80 NNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
++|++|++++|..+..+. ...++|++|++.+. .......+..+++|++|++++|.++.. ....+..+++|+.|
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L 227 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECL 227 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH-HHHHHHHTTTEEEE
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc-hhhhhhhcccccEE
Confidence 888888888875444432 13567888874332 211233456778888888888887543 34455668888888
Q ss_pred ecccc
Q 040388 154 HIDCC 158 (226)
Q Consensus 154 ~l~~C 158 (226)
+++++
T Consensus 228 ~L~~n 232 (353)
T 2z80_A 228 ELRDT 232 (353)
T ss_dssp EEESC
T ss_pred ECCCC
Confidence 88875
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=100.58 Aligned_cols=161 Identities=18% Similarity=0.175 Sum_probs=108.0
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEe
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKA 87 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l 87 (226)
.+++|++|++++|.+...+....+++|++|+|+++.+++-. . +.++++|++|++++|. +..+ .+.++++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEEC
Confidence 46788999999988765445556889999999998874321 1 7788999999998874 2222 2566788888888
Q ss_pred ccCCCceEEE--EecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec
Q 040388 88 YDNFRLQRLH--INGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK 165 (226)
Q Consensus 88 ~~c~~l~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~ 165 (226)
++|. +..+. ...++|++|++.+........+..+++|++|++++|.+++... +..+++|+.|+++++ .++.+.
T Consensus 120 ~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 120 EHNG-ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp TTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCBCG
T ss_pred CCCc-CCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCC-cCCCCh
Confidence 8874 22221 1357788888544311111245677888888888888876432 577888888888875 333332
Q ss_pred -c-CccccceeEEcc
Q 040388 166 -I-SSRCLKKLFFKG 178 (226)
Q Consensus 166 -i-~~~~L~~L~l~~ 178 (226)
+ ..++|+.|++.+
T Consensus 195 ~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 195 ALAGLKNLDVLELFS 209 (291)
T ss_dssp GGTTCTTCSEEEEEE
T ss_pred hhccCCCCCEEECcC
Confidence 2 225677787775
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=106.41 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=96.4
Q ss_pred ccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcc
Q 040388 9 NAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLK 83 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk 83 (226)
.+++|++|+|++|.+... + ....+++|++|+|+++.++.- ....+.++++|++|++++|..+..+. +.++++|+
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 344455555554444321 1 123445555555555544210 01123455666666666655555442 34578999
Q ss_pred eEEeccCCCceEEE--EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 84 EFKAYDNFRLQRLH--INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 84 ~L~l~~c~~l~~~~--~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++... ..+..+++|+.|+++++
T Consensus 189 ~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N- 265 (440)
T 3zyj_A 189 YLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHN- 265 (440)
T ss_dssp EEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTS-
T ss_pred eecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCC-
Confidence 99999885 22221 24578888886543 22223356788899999999998876532 33567889999999885
Q ss_pred cceeecc----CccccceeEEcc
Q 040388 160 KLRSAKI----SSRCLKKLFFKG 178 (226)
Q Consensus 160 ~L~~l~i----~~~~L~~L~l~~ 178 (226)
.++.+.. ..++|+.|++.+
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCS
T ss_pred CCCccChhHhccccCCCEEEcCC
Confidence 4444432 125688888765
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.8e-12 Score=112.97 Aligned_cols=81 Identities=16% Similarity=0.037 Sum_probs=40.4
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHH-HHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceE
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQ-VIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEF 85 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L 85 (226)
.+++|++|++++|..........+++|++|+++++.++.. .+...+.+++.|++|++++|. +..+ .+.++++|+.|
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHL 404 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCee
Confidence 4444555555544322111223566677777766655211 112335667777777777763 2222 23344555555
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
++++|
T Consensus 405 ~l~~n 409 (606)
T 3vq2_A 405 DFQHS 409 (606)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 55554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=106.14 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=31.4
Q ss_pred CCccc-cccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 3 LPQVA-FNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~-~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+|... ..+++|++|+|++|.+... .....+++|+.|+++++.++... ...+.++++|++|++++|
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEEESC
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEECCCC
Confidence 34433 3466777777776665421 12234566666666555442110 011334555555555544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=98.36 Aligned_cols=164 Identities=10% Similarity=0.021 Sum_probs=109.1
Q ss_pred CCccEEEecccccccc-c-CccCCCcccEEEeccee-cCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcce
Q 040388 11 ESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVY-EDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKE 84 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~ 84 (226)
++|++|++++|.+... + ....+++|++|+++++. ++.- ....+.++++|++|++++|..++.+. +.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4899999999987643 2 34578999999999986 5211 01135788999999999977777664 346889999
Q ss_pred EEeccCC--CceEEEEecceee---EEEeCCC---CccccccccCcccCc-EEEeeccccCchhHHHHHhcCCCCcEEec
Q 040388 85 FKAYDNF--RLQRLHINGVNVC---SIDLASR---RTLSDINVAPCKHLE-KLKLSGLYIIDECPSNQVSKLQFLEYLHI 155 (226)
Q Consensus 85 L~l~~c~--~l~~~~~~~~~L~---~L~~~~~---~~~~~~~~~~~~~L~-~L~L~~~~it~~~~~~l~~~~~~Le~L~l 155 (226)
|++++|. .+.. ....++|+ ++++.+. .......+..+++|+ +|++++|.++.- ....+.. ++|+.|++
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCC-CCCCEEEc
Confidence 9999874 2222 12345666 7774332 111222366788888 999988887642 2233334 78899999
Q ss_pred cccccceeecc---C-c-cccceeEEcc
Q 040388 156 DCCMKLRSAKI---S-S-RCLKKLFFKG 178 (226)
Q Consensus 156 ~~C~~L~~l~i---~-~-~~L~~L~l~~ 178 (226)
.++..++.+.. . . ++|+.|++.+
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCC
Confidence 88766666642 2 2 4677777765
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=98.85 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=42.6
Q ss_pred CCcccc-ccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 3 LPQVAF-NAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+|..++ .+++|++|++++|.+... .....+++|++|+|+++.++.. ....+.++++|++|++++|
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCC
Confidence 455544 467888888888876532 2334678888888888776321 1223566788888888776
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=101.36 Aligned_cols=164 Identities=16% Similarity=0.094 Sum_probs=116.4
Q ss_pred cccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCc
Q 040388 6 VAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNL 82 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~L 82 (226)
.+..+++|++|++++|.+...+....+++|++|+++++.+++- ....+.++++|++|++++|. +..+. +.++++|
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNL 135 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCC
Confidence 4667899999999999986544456799999999999987421 12335788999999999984 33332 5668999
Q ss_pred ceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecc
Q 040388 83 KEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 83 k~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~ 156 (226)
+.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++.. ...+..+++|+.|++.
T Consensus 136 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 136 TYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLH 213 (272)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECC
T ss_pred CEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEcc
Confidence 999999984 33322 24689999995543 2222223578899999999999987643 3445788999999998
Q ss_pred ccccceeeccCccccceeEEc
Q 040388 157 CCMKLRSAKISSRCLKKLFFK 177 (226)
Q Consensus 157 ~C~~L~~l~i~~~~L~~L~l~ 177 (226)
+++.. -.++.++.+.+.
T Consensus 214 ~N~~~----~~~~~l~~l~~~ 230 (272)
T 3rfs_A 214 DNPWD----CTCPGIRYLSEW 230 (272)
T ss_dssp SSCBC----CCTTTTHHHHHH
T ss_pred CCCcc----ccCcHHHHHHHH
Confidence 86432 123345555543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-11 Score=106.86 Aligned_cols=103 Identities=14% Similarity=0.011 Sum_probs=51.4
Q ss_pred hcCCccceeeeeccCCceE----EecCCCCCcceEEeccCCCceEE---EEecceeeEEEeCCC---CccccccccCccc
Q 040388 55 AGCPLIEYMHVFDCGGLKC----LELPDLNNLKEFKAYDNFRLQRL---HINGVNVCSIDLASR---RTLSDINVAPCKH 124 (226)
Q Consensus 55 ~~cp~Le~L~l~~c~~l~~----l~i~~~~~Lk~L~l~~c~~l~~~---~~~~~~L~~L~~~~~---~~~~~~~~~~~~~ 124 (226)
..+|+|++|++++|.--.. -.+.++++|++|++++|. +..+ ...+++|++|++.+. .......+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 4455666666655531110 113345677777777664 2221 224566777774442 1111123455666
Q ss_pred CcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 125 LEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 125 L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
|++|++++|.++.... ..+..+++|+.|++.+|.
T Consensus 423 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 423 LIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp CCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCE
T ss_pred CCEEeCcCCcccccch-hhhhcCCcCcEEECcCCc
Confidence 6666666665544322 223456666666666653
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=8e-12 Score=111.46 Aligned_cols=183 Identities=17% Similarity=0.156 Sum_probs=114.5
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHH-HHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceEEe
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQ-VIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEFKA 87 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L~l 87 (226)
++|++|++++|..........+++|++|+++++.++.. .....+.++++|++|++++|.- ..+ .+.++++|++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDF 403 (570)
T ss_dssp SSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEEC
T ss_pred cccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc-ccccccccccCCCCEEEc
Confidence 34444444444432211124678899999988876321 1123467899999999999853 222 2667899999999
Q ss_pred ccCCCceE-----EEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccccc
Q 040388 88 YDNFRLQR-----LHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMK 160 (226)
Q Consensus 88 ~~c~~l~~-----~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~ 160 (226)
++|. +.. .....++|++|++.+. .......+..+++|++|++++|.+++..+...+..+++|+.|++++|.-
T Consensus 404 ~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 404 QHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp TTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred cCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 8874 111 1124678888885543 1112234567888999999988876432334457788999999988743
Q ss_pred ceee-c--c-CccccceeEEcc-e---E----EEeCCCcceEEEeecc
Q 040388 161 LRSA-K--I-SSRCLKKLFFKG-E---F----MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 161 L~~l-~--i-~~~~L~~L~l~~-~---~----~i~~p~L~sl~~~g~~ 196 (226)
+.+ . + ..++|+.|++.+ . + .-..|+|+.+...++.
T Consensus 483 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 483 -EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 333 2 2 235788888876 1 1 1245788888887763
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.4e-12 Score=103.18 Aligned_cols=189 Identities=16% Similarity=0.103 Sum_probs=115.9
Q ss_pred CCCccc-cccCCccEEEecccccccc----cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--
Q 040388 2 NLPQVA-FNAESIVVLELQFCKLESL----RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-- 74 (226)
Q Consensus 2 ~lP~~~-~~~~sL~~L~L~~c~~~~~----~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-- 74 (226)
.+|..+ ..+++|++|++++|.+... .....+++|++|+++++.++. +..-+.++++|++|+++++. +..+
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n~-l~~~~~ 118 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSN-LKQMSE 118 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSE-EESSTT
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCCc-cccccc
Confidence 356654 4688999999999886521 223467899999998887631 11125678888888888763 1111
Q ss_pred --ecCCCCCcceEEeccCCCceEE----EEecceeeEEEeCCC--Cc-cccccccCcccCcEEEeeccccCchhHHHHHh
Q 040388 75 --ELPDLNNLKEFKAYDNFRLQRL----HINGVNVCSIDLASR--RT-LSDINVAPCKHLEKLKLSGLYIIDECPSNQVS 145 (226)
Q Consensus 75 --~i~~~~~Lk~L~l~~c~~l~~~----~~~~~~L~~L~~~~~--~~-~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~ 145 (226)
.+.++++|+.|++++|. +... ....++|++|++.+. .. .....+..+++|++|++++|.+++..+ ..+.
T Consensus 119 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~ 196 (306)
T 2z66_A 119 FSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFN 196 (306)
T ss_dssp TTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTT
T ss_pred chhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhc
Confidence 24456788888888774 2211 113467888875543 11 122345677788888888887766432 3346
Q ss_pred cCCCCcEEeccccccceeec---cC-ccccceeEEcc-eE-------EEeC-CCcceEEEeecc
Q 040388 146 KLQFLEYLHIDCCMKLRSAK---IS-SRCLKKLFFKG-EF-------MLDT-SNLSTFEYQGNL 196 (226)
Q Consensus 146 ~~~~Le~L~l~~C~~L~~l~---i~-~~~L~~L~l~~-~~-------~i~~-p~L~sl~~~g~~ 196 (226)
.+++|+.|+++++. ++.+. +. .++|+.|++.+ .+ .... ++|+.+...|+.
T Consensus 197 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 197 SLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 67888888888753 22221 22 25677777775 11 1223 377777777664
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-11 Score=100.37 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=88.0
Q ss_pred cccccCCccEEEecccccccc--cCccCCCcccEEEecceecCH---H-----------------HHHHHHhcCCcccee
Q 040388 6 VAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDD---Q-----------------VIEDFVAGCPLIEYM 63 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~---~-----------------~l~~l~~~cp~Le~L 63 (226)
.+..+++|++|++++|.+... .....+++|++|+++++.++. . .....+.++++|+.|
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEE
Confidence 344566777777777665422 223356666666666665421 0 011223445555555
Q ss_pred eeeccCC----ceEEecCCCCCcceEEeccCCCceEEEE-ecceeeEEEeCCC--CccccccccCcccCcEEEeeccccC
Q 040388 64 HVFDCGG----LKCLELPDLNNLKEFKAYDNFRLQRLHI-NGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYII 136 (226)
Q Consensus 64 ~l~~c~~----l~~l~i~~~~~Lk~L~l~~c~~l~~~~~-~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it 136 (226)
+++++.- ...-.+.++++|+.|++++|. +..+.. ..++|++|++.+. .......+..+++|++|++++|.++
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 5554421 111112345666666666653 211111 1256777775442 1111224566777888888887776
Q ss_pred chhHHHHHhcCCCCcEEeccccccceeec--c-CccccceeEEcc
Q 040388 137 DECPSNQVSKLQFLEYLHIDCCMKLRSAK--I-SSRCLKKLFFKG 178 (226)
Q Consensus 137 ~~~~~~l~~~~~~Le~L~l~~C~~L~~l~--i-~~~~L~~L~l~~ 178 (226)
+... ..+..+++|+.|++++| .++.+. + ..++|++|++.+
T Consensus 230 ~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 230 AVDN-GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp EECT-TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS
T ss_pred eeCh-hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC
Confidence 5432 23456778888888775 333332 1 125677777765
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=99.62 Aligned_cols=163 Identities=23% Similarity=0.186 Sum_probs=86.7
Q ss_pred CCccEEEeccccccccc--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESLR--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L 85 (226)
++|++|++++|.+...+ ....+++|++|+++++.++. ....++.++++|++|+++++. +..+. +.++++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEE
Confidence 46777777777665321 23456777777777776531 111224566777777777653 22221 3446677777
Q ss_pred EeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 86 KAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 86 ~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
+++++. +..+. ...++|++|++.+. .......+..+++|++|++++|.++... ...+..+++|+.|+++++
T Consensus 115 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N- 191 (270)
T 2o6q_A 115 RLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNN- 191 (270)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS-
T ss_pred ECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCC-
Confidence 777663 22111 13466666664332 1111122456667777777777665432 122355667777777664
Q ss_pred cceeecc---C-ccccceeEEcc
Q 040388 160 KLRSAKI---S-SRCLKKLFFKG 178 (226)
Q Consensus 160 ~L~~l~i---~-~~~L~~L~l~~ 178 (226)
.++.+.. . .++|+.|++.+
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 192 QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCcCCHHHhccccCCCEEEecC
Confidence 3333321 1 23556666554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-11 Score=94.45 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=73.2
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce--EEecCCCCCcceEE
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK--CLELPDLNNLKEFK 86 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~--~l~i~~~~~Lk~L~ 86 (226)
.+++|++|++++|.+...+....+++|++|+++++.+++- . -+.++|+|++|++++|.--. .-.++++++|+.|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4567888888887776434455678888888888765221 1 35667888888887763211 12355667777777
Q ss_pred eccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccc-cCchhHHHHHhcCCCCcEEecccc
Q 040388 87 AYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLY-IIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 87 l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+++|. +.. .....+..+++|++|++++|. +++. . .+..+++|+.|++++|
T Consensus 119 Ls~n~-i~~------------------~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 119 ISHSA-HDD------------------SILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCSSB-CBG------------------GGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTB
T ss_pred ecCCc-cCc------------------HhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCC
Confidence 77763 111 001123455666666666665 4442 1 2355666666666664
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-11 Score=99.94 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=118.3
Q ss_pred CCCccccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ec
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---EL 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i 76 (226)
.+|..+. ++|++|++++|.+... + ....+++|++|+++++.++.-. ...+.++++|++|++++|. +..+ .+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 3566543 5799999999987632 2 3457899999999999773211 1235778999999999874 3333 25
Q ss_pred CCCCCcceEEeccCC--CceEE-EEecceeeEEEeCCC--Cc-cccccccCcccCcEEEeeccccCchhHHH--HHhcCC
Q 040388 77 PDLNNLKEFKAYDNF--RLQRL-HINGVNVCSIDLASR--RT-LSDINVAPCKHLEKLKLSGLYIIDECPSN--QVSKLQ 148 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~--~l~~~-~~~~~~L~~L~~~~~--~~-~~~~~~~~~~~L~~L~L~~~~it~~~~~~--l~~~~~ 148 (226)
.++++|++|++++|. .+... ....++|++|++.+. .. ..+..+..+++|++|++++|.+++..... ....++
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 678899999998885 22211 124678888885543 11 12335677889999999999876632211 123333
Q ss_pred CCc-EEeccccccceeec---cCccccceeEEcc-e---E----EEeCCCcceEEEeec
Q 040388 149 FLE-YLHIDCCMKLRSAK---ISSRCLKKLFFKG-E---F----MLDTSNLSTFEYQGN 195 (226)
Q Consensus 149 ~Le-~L~l~~C~~L~~l~---i~~~~L~~L~l~~-~---~----~i~~p~L~sl~~~g~ 195 (226)
.+. .|+++++ .++.+. ....+|+.|++.+ . + .-..++|+.+...++
T Consensus 177 ~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 177 LLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ccceeeecCCC-cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 333 6777764 333332 1223577777765 1 1 123567777777766
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-11 Score=100.16 Aligned_cols=170 Identities=18% Similarity=0.121 Sum_probs=116.8
Q ss_pred ccccccCCccEEEecccccccc--cCccCCCcccEEEeccee-cCHHHHHHHHhcCCccceeeeeccCCceE--EecCCC
Q 040388 5 QVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVY-EDDQVIEDFVAGCPLIEYMHVFDCGGLKC--LELPDL 79 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--l~i~~~ 79 (226)
..+..+++|++|++++|.+... .....+++|++|+++++. ++.- ....+.++++|++|++++|.--.. -.+.++
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence 3456789999999999987632 234568999999999986 4221 122367789999999998742211 125568
Q ss_pred CCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 80 NNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
++|++|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++..+ ..+..+++|+.|
T Consensus 129 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 206 (285)
T 1ozn_A 129 AALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTL 206 (285)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEE
T ss_pred cCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEe
Confidence 899999999884 32221 13678999986543 11122236678999999999998877543 334678999999
Q ss_pred eccccccceeec---c-CccccceeEEcc
Q 040388 154 HIDCCMKLRSAK---I-SSRCLKKLFFKG 178 (226)
Q Consensus 154 ~l~~C~~L~~l~---i-~~~~L~~L~l~~ 178 (226)
+++++ .++.+. + ..++|+.+++.+
T Consensus 207 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 207 YLFAN-NLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp ECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred eCCCC-cCCcCCHHHcccCcccCEEeccC
Confidence 99986 333333 2 236788899887
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.16 E-value=8e-12 Score=104.09 Aligned_cols=190 Identities=14% Similarity=0.071 Sum_probs=96.1
Q ss_pred CCCccccccCCccEEEecc-cccc-cc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ec
Q 040388 2 NLPQVAFNAESIVVLELQF-CKLE-SL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--EL 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~-c~~~-~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i 76 (226)
.+|..+..+++|++|++++ +.+. .. .....+++|++|+|+++.++.. +...+.++++|++|++++|.--..+ .+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 3566777777777777775 5443 21 2234577777777777765321 1223556777777777766311111 23
Q ss_pred CCCCCcceEEeccCCCce-EEE---Eecc-eeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCC
Q 040388 77 PDLNNLKEFKAYDNFRLQ-RLH---INGV-NVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQF 149 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~-~~~---~~~~-~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~ 149 (226)
.++++|++|++++|. +. .+. ...+ +|++|++.+. .......+..++ |++|++++|.+++... ..+..+++
T Consensus 146 ~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-~~~~~l~~ 222 (313)
T 1ogq_A 146 SSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDKN 222 (313)
T ss_dssp GGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-GGCCTTSC
T ss_pred hcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-HHHhcCCC
Confidence 456777777777664 22 111 0122 5666664332 111112233333 6666666666554322 33355666
Q ss_pred CcEEeccccccceeec-c-CccccceeEEcc-eE-------EEeCCCcceEEEeec
Q 040388 150 LEYLHIDCCMKLRSAK-I-SSRCLKKLFFKG-EF-------MLDTSNLSTFEYQGN 195 (226)
Q Consensus 150 Le~L~l~~C~~L~~l~-i-~~~~L~~L~l~~-~~-------~i~~p~L~sl~~~g~ 195 (226)
|+.|+++++.--..+. + ..++|++|++.+ .+ .-..|+|+.+...++
T Consensus 223 L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 6666666642211111 1 124566666654 11 122355666655555
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-11 Score=101.60 Aligned_cols=181 Identities=21% Similarity=0.169 Sum_probs=117.0
Q ss_pred ccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcce
Q 040388 5 QVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKE 84 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~ 84 (226)
..+..+++|++|++++|.+........+++|++|+++++.+++ +..+|.|++|++++|. +..+....+++|++
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~ 124 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNN-ISRVSCSRGQGKKN 124 (317)
T ss_dssp HHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSC-CSEEEECCCSSCEE
T ss_pred HHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEECCCCc-cCCcCccccCCCCE
Confidence 4566789999999999988633235679999999999998743 2245899999999873 44444455788888
Q ss_pred EEeccCC--CceEEE-EecceeeEEEeCCC--Ccc-ccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 85 FKAYDNF--RLQRLH-INGVNVCSIDLASR--RTL-SDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 85 L~l~~c~--~l~~~~-~~~~~L~~L~~~~~--~~~-~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
|++++|. .+.... ...++|++|++.+. ... .......+++|++|++++|.+++.. . ...+++|+.|+++++
T Consensus 125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~-~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--G-QVVFAKLKTLDLSSN 201 (317)
T ss_dssp EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--C-CCCCTTCCEEECCSS
T ss_pred EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--c-ccccccCCEEECCCC
Confidence 8888875 221111 23577888885543 111 1112235678888888888876531 1 124778888888875
Q ss_pred ccceeec--c-CccccceeEEcc-e---E---EEeCCCcceEEEeecc
Q 040388 159 MKLRSAK--I-SSRCLKKLFFKG-E---F---MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 159 ~~L~~l~--i-~~~~L~~L~l~~-~---~---~i~~p~L~sl~~~g~~ 196 (226)
.++.+. + ..++|+.|++.+ . + .-..|+|+.+...++.
T Consensus 202 -~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 202 -KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred -cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 333332 1 225677777776 1 1 1235677777777663
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-11 Score=108.12 Aligned_cols=142 Identities=18% Similarity=0.168 Sum_probs=70.5
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEe
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKA 87 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l 87 (226)
.+++|+.|++++|.+...+....+++|+.|+|+++.+++-. . +..+++|+.|++++|. +..+ .+..+++|+.|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEe
Confidence 34566666666666553333445666666666666652211 1 5566666666666652 1111 2344556666666
Q ss_pred ccCCCceEE--EEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 88 YDNFRLQRL--HINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 88 ~~c~~l~~~--~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
++|. +..+ ...+++|+.|++.+........+..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 117 s~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 117 EHNG-ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred cCCC-CCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCC
Confidence 6553 1111 01245555555333210001233455556666666555554322 345555565555554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.5e-11 Score=98.19 Aligned_cols=173 Identities=11% Similarity=0.049 Sum_probs=121.3
Q ss_pred CCCccccccCCccEEEecccccc-cc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLE-SL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~-~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~ 77 (226)
.+|..+..+++|++|++++|.+. .. .....+++|++|+|+++.+++. +...+.++++|++|++++|.--..+ .+.
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence 47888899999999999999986 33 3345799999999999987432 2233678999999999998532222 345
Q ss_pred CCC-CcceEEeccCCCceEE-E--EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 78 DLN-NLKEFKAYDNFRLQRL-H--INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 78 ~~~-~Lk~L~l~~c~~l~~~-~--~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
.++ +|+.|++++|. +... . +....|++|++.+. .......+..+++|++|++++|.++..... +..+++|+
T Consensus 171 ~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~ 247 (313)
T 1ogq_A 171 SFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLN 247 (313)
T ss_dssp CCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCC
T ss_pred hhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCC
Confidence 566 89999999884 2211 1 11123888885543 112234567889999999999998765432 46789999
Q ss_pred EEeccccccceeec--cC-ccccceeEEcc
Q 040388 152 YLHIDCCMKLRSAK--IS-SRCLKKLFFKG 178 (226)
Q Consensus 152 ~L~l~~C~~L~~l~--i~-~~~L~~L~l~~ 178 (226)
.|+++++.--..+. +. .++|+.|++.+
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 99999875432332 22 25789999887
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4e-12 Score=105.78 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=50.0
Q ss_pred ccCCccEEEecccccc-cccC-c--cCCCcccEEEecceecCH--HHHHHHHhc-CCccceeeeeccCCceEE---ecCC
Q 040388 9 NAESIVVLELQFCKLE-SLRN-N--VTLSSLRKLCSSHVYEDD--QVIEDFVAG-CPLIEYMHVFDCGGLKCL---ELPD 78 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~-~~~~-~--~~l~sLk~L~L~~~~~~~--~~l~~l~~~-cp~Le~L~l~~c~~l~~l---~i~~ 78 (226)
.+++|++|++++|.+. ..+. . ..+++|++|+|+++.+++ ..+..+... .++|++|++++|.- ..+ .+.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhcc
Confidence 5677888888888765 2222 1 467788888888877733 233332211 37788888877632 211 2445
Q ss_pred CCCcceEEeccCC
Q 040388 79 LNNLKEFKAYDNF 91 (226)
Q Consensus 79 ~~~Lk~L~l~~c~ 91 (226)
+++|++|++++|.
T Consensus 172 l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 172 FPALSTLDLSDNP 184 (312)
T ss_dssp CSSCCEEECCSCT
T ss_pred CCCCCEEECCCCC
Confidence 6777777777764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=102.17 Aligned_cols=168 Identities=12% Similarity=0.060 Sum_probs=109.5
Q ss_pred CCcccc-ccCCccEEEeccccccc--c---cCccCCCcccEEEecceecCHHH-HHHHHhcCCccceeeeeccCCceEE-
Q 040388 3 LPQVAF-NAESIVVLELQFCKLES--L---RNNVTLSSLRKLCSSHVYEDDQV-IEDFVAGCPLIEYMHVFDCGGLKCL- 74 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~~--~---~~~~~l~sLk~L~L~~~~~~~~~-l~~l~~~cp~Le~L~l~~c~~l~~l- 74 (226)
+|..++ .+++|++|++++|.+.. + .....+++|++|+|++|.+++-. ....+..+++|++|++++| .+..+
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp 403 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMP 403 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCC
Confidence 566665 57888888888887652 1 12346788899999888874322 2345778888999998887 33332
Q ss_pred -ecCCCCCcceEEeccCCCceEEEEe-cceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcE
Q 040388 75 -ELPDLNNLKEFKAYDNFRLQRLHIN-GVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEY 152 (226)
Q Consensus 75 -~i~~~~~Lk~L~l~~c~~l~~~~~~-~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~ 152 (226)
.+..+++|++|++++|. +..+... .++|++|++.+.... -....+++|++|++++|.++. +.. ...+++|+.
T Consensus 404 ~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~--~~~~~l~~L~~L~Ls~N~l~~--ip~-~~~l~~L~~ 477 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLD--SFSLFLPRLQELYISRNKLKT--LPD-ASLFPVLLV 477 (549)
T ss_dssp SCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCS--CCCCCCTTCCEEECCSSCCSS--CCC-GGGCTTCCE
T ss_pred hhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChh--hhcccCChhcEEECCCCccCc--CCC-cccCccCCE
Confidence 23456788888888884 3322111 257888885543110 113578899999999998874 222 256899999
Q ss_pred Eeccccccceeecc----CccccceeEEcc
Q 040388 153 LHIDCCMKLRSAKI----SSRCLKKLFFKG 178 (226)
Q Consensus 153 L~l~~C~~L~~l~i----~~~~L~~L~l~~ 178 (226)
|+++++ .++.+.. ...+|+.+++.+
T Consensus 478 L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 478 MKISRN-QLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp EECCSS-CCCCCCTTGGGGCTTCCEEECCS
T ss_pred EecCCC-ccCCcCHHHHhcCcccCEEEecC
Confidence 999986 4444321 124677777766
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-11 Score=97.81 Aligned_cols=184 Identities=15% Similarity=0.076 Sum_probs=102.2
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe-cCCCCCcceE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE-LPDLNNLKEF 85 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~-i~~~~~Lk~L 85 (226)
+.+++++++++++++.+...+... .++++.|+|+++.++.-. ...+.+++.|++|+++++. +..+. ...+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEE
Confidence 345677788888877766433222 367788888877763211 1235667778888877763 33222 2456777777
Q ss_pred EeccCC--CceEEEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccc
Q 040388 86 KAYDNF--RLQRLHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKL 161 (226)
Q Consensus 86 ~l~~c~--~l~~~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L 161 (226)
+++++. .+.......++|++|++.+. .......+..+++|++|++++|.++.. +...+..+++|+.|+++++ .+
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N-~l 160 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN-NL 160 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS-CC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCC-cC
Confidence 777764 12111123466777774432 111122355667777777777776543 2233456677777777764 33
Q ss_pred eeecc---C-ccccceeEEcc-eE------EEeCCCcceEEEeec
Q 040388 162 RSAKI---S-SRCLKKLFFKG-EF------MLDTSNLSTFEYQGN 195 (226)
Q Consensus 162 ~~l~i---~-~~~L~~L~l~~-~~------~i~~p~L~sl~~~g~ 195 (226)
+.+.. . -.+|+.|++.+ .+ ..+.++|+.+...|+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 43332 1 24566666655 11 123445666666655
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-11 Score=103.58 Aligned_cols=173 Identities=18% Similarity=0.120 Sum_probs=104.8
Q ss_pred CccccccCCccEEEeccccccccc-C-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCC
Q 040388 4 PQVAFNAESIVVLELQFCKLESLR-N-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPD 78 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~-~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~ 78 (226)
|..+..+++|++|++++|.+...+ . ...+++|++|+++++.++.-.....+.++++|++|++++|..+..+ .+.+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 445667899999999999876432 2 3468999999999998742110024677899999999998666555 3556
Q ss_pred CCCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCc---------------
Q 040388 79 LNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIID--------------- 137 (226)
Q Consensus 79 ~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~--------------- 137 (226)
+++|++|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.+++
T Consensus 173 l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 173 LTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp CCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred CCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence 7888888888874 22221 12456666664332 10011112235566666666655543
Q ss_pred ------------hh---HHHHHhcCCCCcEEeccccccceeecc----CccccceeEEcc
Q 040388 138 ------------EC---PSNQVSKLQFLEYLHIDCCMKLRSAKI----SSRCLKKLFFKG 178 (226)
Q Consensus 138 ------------~~---~~~l~~~~~~Le~L~l~~C~~L~~l~i----~~~~L~~L~l~~ 178 (226)
.. +...+..+++|+.|+++++ .++.+.. ..++|++|++.+
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeC
Confidence 21 1233466777888888775 3344432 124566666665
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=107.36 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=20.3
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+..+++|+.|++++|.++.... ..+..+++|+.|+++++
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESC
T ss_pred hhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCC
Confidence 3445556666666665544322 22345566666666554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-10 Score=101.61 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=41.3
Q ss_pred CCcccc-ccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 3 LPQVAF-NAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+|..++ .+++|++|+|++|.+... + ....+++|++|+|+++.++.- ....+.++++|+.|++++|
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCC
Confidence 455544 467788888888776532 2 334677888888887776321 1223566778888887776
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-11 Score=104.64 Aligned_cols=182 Identities=21% Similarity=0.176 Sum_probs=120.7
Q ss_pred CccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcc
Q 040388 4 PQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLK 83 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk 83 (226)
|..+..+++|++|+|++|.+........+++|++|+|++|.+++ +...|.|+.|++++|. +..+....+++|+
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~-l~~~~~~~l~~L~ 123 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNN-ISRVSCSRGQGKK 123 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSC-CCCEEECCCSSCE
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCc-CCCCCccccCCCC
Confidence 45667899999999999998632235679999999999998743 2244899999999874 3333334568899
Q ss_pred eEEeccCC--CceEE-EEecceeeEEEeCCC--Cccccccc-cCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 84 EFKAYDNF--RLQRL-HINGVNVCSIDLASR--RTLSDINV-APCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 84 ~L~l~~c~--~l~~~-~~~~~~L~~L~~~~~--~~~~~~~~-~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
.|++++|. .+... ....++|++|++.+. .......+ ..+++|++|++++|.+++.. . ...+++|+.|++++
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~-~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--G-QVVFAKLKTLDLSS 200 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--C-CCCCTTCCEEECCS
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--c-cccCCCCCEEECCC
Confidence 99998885 22111 124678888885543 11111222 36788899999988887642 1 23578888888888
Q ss_pred cccceeecc---CccccceeEEcc-eE------EEeCCCcceEEEeecc
Q 040388 158 CMKLRSAKI---SSRCLKKLFFKG-EF------MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 158 C~~L~~l~i---~~~~L~~L~l~~-~~------~i~~p~L~sl~~~g~~ 196 (226)
+ .++.+.. ..++|+.|++.+ .+ .-..|+|+.+...|+.
T Consensus 201 N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 201 N-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp S-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred C-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 5 3333321 235688888876 11 1234778888777764
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-10 Score=102.84 Aligned_cols=58 Identities=22% Similarity=0.146 Sum_probs=40.3
Q ss_pred CCCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+|..++ ++|++|++++|.+...+. .+++|++|+|++|.++. +-...++|++|++++|
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-----LPVLPPGLLELSIFSN 111 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC-----CCCCCTTCCEEEECSC
T ss_pred ccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc-----CCCCCCCCCEEECcCC
Confidence 3566655 688888888887764333 57888888888887631 1226678888888776
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.09 E-value=8e-11 Score=107.16 Aligned_cols=66 Identities=11% Similarity=-0.028 Sum_probs=48.0
Q ss_pred CCcccc--ccCCccEEEecccccc-cc-cCccCCCcccEEEeccee-cCHHHHHHHH------hcCCccceeeeecc
Q 040388 3 LPQVAF--NAESIVVLELQFCKLE-SL-RNNVTLSSLRKLCSSHVY-EDDQVIEDFV------AGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~~--~~~sL~~L~L~~c~~~-~~-~~~~~l~sLk~L~L~~~~-~~~~~l~~l~------~~cp~Le~L~l~~c 68 (226)
+|..+. .+++|++|++++|.+. .. .....+++|++|+++++. +++..+..-+ .++++|++|++++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 899999 9999999999999864 22 334579999999999998 6662222222 23477777777665
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.09 E-value=9e-11 Score=106.80 Aligned_cols=205 Identities=11% Similarity=0.012 Sum_probs=135.2
Q ss_pred CCCccccccCCccEEEecccc-ccc--ccC-cc------CCCcccEEEecceecCHHHHHH--HHhcCCccceeeeeccC
Q 040388 2 NLPQVAFNAESIVVLELQFCK-LES--LRN-NV------TLSSLRKLCSSHVYEDDQVIED--FVAGCPLIEYMHVFDCG 69 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~-~~~--~~~-~~------~l~sLk~L~L~~~~~~~~~l~~--l~~~cp~Le~L~l~~c~ 69 (226)
.+|..+..+++|++|++++|. +.. .+. .. .+++|++|+++++.++ .+.. .+.++++|++|++++|.
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCc
Confidence 478899999999999999998 542 222 12 3499999999999886 3443 57889999999999885
Q ss_pred CceEE-ecCCCCCcceEEeccCCCceEE---EEecce-eeEEEeCCC-CccccccccC--cccCcEEEeeccccCchhHH
Q 040388 70 GLKCL-ELPDLNNLKEFKAYDNFRLQRL---HINGVN-VCSIDLASR-RTLSDINVAP--CKHLEKLKLSGLYIIDECPS 141 (226)
Q Consensus 70 ~l~~l-~i~~~~~Lk~L~l~~c~~l~~~---~~~~~~-L~~L~~~~~-~~~~~~~~~~--~~~L~~L~L~~~~it~~~~~ 141 (226)
--..+ .+..+++|+.|++++|. +..+ ....++ |++|++.+. ....+..+.. +++|++|++++|.++...+.
T Consensus 342 l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 342 LEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp CEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred CccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 32133 44556899999999884 3322 124567 999995543 1111222333 44899999999998775432
Q ss_pred HHHh-------cCCCCcEEeccccccceeecc----CccccceeEEcc-eEE------E-e-------CCCcceEEEeec
Q 040388 142 NQVS-------KLQFLEYLHIDCCMKLRSAKI----SSRCLKKLFFKG-EFM------L-D-------TSNLSTFEYQGN 195 (226)
Q Consensus 142 ~l~~-------~~~~Le~L~l~~C~~L~~l~i----~~~~L~~L~l~~-~~~------i-~-------~p~L~sl~~~g~ 195 (226)
.+ . .+++|+.|+++++. ++.+.. ..++|+.|++.+ .+. . . +++|+.+...++
T Consensus 421 ~l-~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 421 NF-DPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SS-CTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hh-cccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence 22 3 56799999999863 333332 135788888876 111 1 1 128889888877
Q ss_pred cee---ecc---ccccceeeeE
Q 040388 196 LVS---FSS---NALALSQIIL 211 (226)
Q Consensus 196 ~~~---~~~---~~~~l~~~~~ 211 (226)
.+. ... +.+.|+.+.+
T Consensus 499 ~l~~lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 499 KLTKLSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp CCCBCCGGGSTTTCTTCCEEEC
T ss_pred cCCccChhhhhccCCCcCEEEC
Confidence 532 211 3456666655
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.9e-11 Score=92.17 Aligned_cols=131 Identities=13% Similarity=0.042 Sum_probs=96.6
Q ss_pred CCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce--EEecCCCC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK--CLELPDLN 80 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~--~l~i~~~~ 80 (226)
+| .+..+++|++|++++|.+...+....+++|++|+++++.+++..... +.++|+|+.|++++|.--. .-.+.+++
T Consensus 59 l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 136 (197)
T 4ezg_A 59 LT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLP 136 (197)
T ss_dssp CT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSBCBGGGHHHHTTCS
T ss_pred hH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCccCcHhHHHHhhCC
Confidence 45 57788999999999997764445567999999999999885533333 6789999999999984321 11356789
Q ss_pred CcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 81 NLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 81 ~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+|++|++++|..+..+ . .+..+++|++|++++|.+++.. .+..+++|+.|++.+.
T Consensus 137 ~L~~L~L~~n~~i~~~-------------------~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDI-------------------M-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SCCEEECCSCTBCCCC-------------------G-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred CCCEEEccCCCCcccc-------------------H-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence 9999999988533321 1 3556788899999988887632 3467888888888774
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=98.99 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=74.4
Q ss_pred CCcceEEeccCCC----ceE---EEEecceeeEEEeCCCC-c------cccccccCcccCcEEEeeccccCchh---HHH
Q 040388 80 NNLKEFKAYDNFR----LQR---LHINGVNVCSIDLASRR-T------LSDINVAPCKHLEKLKLSGLYIIDEC---PSN 142 (226)
Q Consensus 80 ~~Lk~L~l~~c~~----l~~---~~~~~~~L~~L~~~~~~-~------~~~~~~~~~~~L~~L~L~~~~it~~~---~~~ 142 (226)
++|++|++++|.- +.. .....++|++|++.+.. . .....+..+++|++|++++|.+++.. +..
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 6788888887741 111 11145688888854431 1 11114567889999999999987533 334
Q ss_pred HHhcCCCCcEEeccccccceee---------c-cCccccceeEEcc-e--------E---E-EeCCCcceEEEeecc
Q 040388 143 QVSKLQFLEYLHIDCCMKLRSA---------K-ISSRCLKKLFFKG-E--------F---M-LDTSNLSTFEYQGNL 196 (226)
Q Consensus 143 l~~~~~~Le~L~l~~C~~L~~l---------~-i~~~~L~~L~l~~-~--------~---~-i~~p~L~sl~~~g~~ 196 (226)
.+..+++|+.|++++|.- ... . -..++|+.|++.+ . + . -..|+|+.+...++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HGGGCTTCCEEECTTCCC-CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHccCCCcCEEECCCCCC-chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 567889999999998742 211 1 1146799999876 1 1 1 235999999888773
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-10 Score=94.98 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=107.7
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEF 85 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L 85 (226)
+..+++|++|++++|.+...+....+++|+.|+++++.+++ +.. +..+++|++|++++|. +..+ .+..+++|+.|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEE
Confidence 56789999999999998744335679999999999998843 222 7889999999999884 3222 35568999999
Q ss_pred EeccCCCceEEE--EecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 86 KAYDNFRLQRLH--INGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 86 ~l~~c~~l~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
++++|. +..+. ...++|++|++.+........+..+++|++|++++|.+++. .. +..+++|+.|++.++
T Consensus 140 ~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 140 YLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEEE
T ss_pred EccCCc-CCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcCC
Confidence 999985 33221 14688999996543111111277889999999999999874 23 578999999999986
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-11 Score=99.90 Aligned_cols=186 Identities=16% Similarity=0.093 Sum_probs=105.6
Q ss_pred CccccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCC
Q 040388 4 PQVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPD 78 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~ 78 (226)
|..+..+++|++|++++|.+... .....+++|++|+|+++.++. +.. ...++|++|+++++.- ..+ .+.+
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~L~l~~n~i-~~~~~~~~~~ 145 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVELRIHDNRI-RKVPKGVFSG 145 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCEEECCSSCC-CCCCSGGGSS
T ss_pred HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCEEECCCCcc-CccCHhHhCC
Confidence 34566778888888888876532 233467888888888877631 110 1126777777776631 111 1344
Q ss_pred CCCcceEEeccCCC------------------------ceEEEE-ecceeeEEEeCCC--CccccccccCcccCcEEEee
Q 040388 79 LNNLKEFKAYDNFR------------------------LQRLHI-NGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLS 131 (226)
Q Consensus 79 ~~~Lk~L~l~~c~~------------------------l~~~~~-~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~ 131 (226)
+++|+.|+++++.- +..+.. ..++|++|++.+. .......+..+++|++|+++
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 56666666655531 111100 0145666664332 11112245677888888888
Q ss_pred ccccCchhHHHHHhcCCCCcEEeccccccceeecc---CccccceeEEcc-eE-------------EEeCCCcceEEEee
Q 040388 132 GLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI---SSRCLKKLFFKG-EF-------------MLDTSNLSTFEYQG 194 (226)
Q Consensus 132 ~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i---~~~~L~~L~l~~-~~-------------~i~~p~L~sl~~~g 194 (226)
+|.+++... ..+..+++|+.|+++++ .++.+.. ..++|+.|++.+ .+ ....++++.+.+.|
T Consensus 226 ~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 226 HNQIRMIEN-GSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp SSCCCCCCT-TGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred CCcCCcCCh-hHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 888766432 23467888888888875 3444422 125678888775 11 01145677777777
Q ss_pred cc
Q 040388 195 NL 196 (226)
Q Consensus 195 ~~ 196 (226)
+.
T Consensus 304 N~ 305 (332)
T 2ft3_A 304 NP 305 (332)
T ss_dssp SS
T ss_pred Cc
Confidence 63
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-11 Score=98.82 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=121.1
Q ss_pred cccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC--ceEEecCCCCC
Q 040388 6 VAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG--LKCLELPDLNN 81 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~--l~~l~i~~~~~ 81 (226)
.+..+++|++|++++|.+... + ....+++|++|+|+++.++... ...+.++++|++|++++|.- +....+.++++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 566789999999999987632 2 3457899999999999874321 12367889999999998742 22224677899
Q ss_pred cceEEeccCCCceEE-----EEecceeeEEEeCCC--CccccccccCcccCc----EEEeeccccCchhHHHHHhcCCCC
Q 040388 82 LKEFKAYDNFRLQRL-----HINGVNVCSIDLASR--RTLSDINVAPCKHLE----KLKLSGLYIIDECPSNQVSKLQFL 150 (226)
Q Consensus 82 Lk~L~l~~c~~l~~~-----~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~----~L~L~~~~it~~~~~~l~~~~~~L 150 (226)
|++|++++|. +..+ ....++|++|++.+. .......+..+++|+ +|++++|.++.... .. ....+|
T Consensus 126 L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~-~~~~~L 202 (276)
T 2z62_A 126 LKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GA-FKEIRL 202 (276)
T ss_dssp CCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT-TS-SCSCCE
T ss_pred CCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc-cc-cCCCcc
Confidence 9999999885 2221 124588999996543 111122344455565 88999998876422 22 234589
Q ss_pred cEEeccccccceeecc---C-ccccceeEEcc-eEEEeCCCcceE
Q 040388 151 EYLHIDCCMKLRSAKI---S-SRCLKKLFFKG-EFMLDTSNLSTF 190 (226)
Q Consensus 151 e~L~l~~C~~L~~l~i---~-~~~L~~L~l~~-~~~i~~p~L~sl 190 (226)
+.|+++++. ++.+.. . .++|+.+++.+ .+.-++|.++.+
T Consensus 203 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 203 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp EEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred cEEECCCCc-eeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 999999864 454432 2 35788999887 455677777643
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.8e-11 Score=95.52 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=85.3
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEF 85 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L 85 (226)
+..+++|++|++++|.+...+....+++|+.|+|+++.+++-. . +.++++|++|++++|. +..+ .+.. ++|+.|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc-cCCcCcccc-CcccEE
Confidence 4456788888888887764444456788888888888773321 1 6778888888888763 2222 1223 677777
Q ss_pred EeccCCCceEEE--EecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 86 KAYDNFRLQRLH--INGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 86 ~l~~c~~l~~~~--~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
++++|. +..+. ...++|++|++.+. .... ..+..+++|++|++++|.+++. ..+..+++|+.|++.++
T Consensus 112 ~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 112 FLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred EccCCc-cCCChhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 777774 22211 13456666664432 1111 1345566777777777766653 23456667777776664
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-10 Score=95.14 Aligned_cols=150 Identities=17% Similarity=0.108 Sum_probs=107.5
Q ss_pred cccccCCccEEEeccccccccc-C-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCC
Q 040388 6 VAFNAESIVVLELQFCKLESLR-N-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLN 80 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~-~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~ 80 (226)
.+..+++|++|++++|.+...+ . ...+++|++|+++++.++.- ....+.++++|++|+++++. +..+ .+.+++
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT 133 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence 4567899999999999886432 2 34689999999999987321 12346788999999999874 2222 245689
Q ss_pred CcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEe
Q 040388 81 NLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLH 154 (226)
Q Consensus 81 ~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~ 154 (226)
+|++|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.++.. ....+..+++|+.|+
T Consensus 134 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 134 KLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQ 211 (270)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEE
Confidence 99999999984 33222 13688999996543 222222466789999999999998753 234457789999999
Q ss_pred ccccc
Q 040388 155 IDCCM 159 (226)
Q Consensus 155 l~~C~ 159 (226)
+.+++
T Consensus 212 l~~N~ 216 (270)
T 2o6q_A 212 LQENP 216 (270)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 98753
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-10 Score=105.26 Aligned_cols=146 Identities=16% Similarity=0.097 Sum_probs=109.1
Q ss_pred cccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcce
Q 040388 6 VAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKE 84 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~ 84 (226)
.+..+++|++|+|++|.+...+....+++|+.|+|++|.+.+ +. -+..+++|+.|++++|.- ..+ .+.++++|+.
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~ 135 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLES 135 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCC-CCCGGGGGCTTCSE
T ss_pred HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCC-CCCccccCCCccCE
Confidence 467789999999999998644335679999999999998843 12 367899999999998842 222 3566899999
Q ss_pred EEeccCCCceEEE--EecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 85 FKAYDNFRLQRLH--INGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 85 L~l~~c~~l~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
|++++|. +..+. ..+++|+.|++.+........+..+++|++|++++|.+++. . .+..+++|+.|++.+|+
T Consensus 136 L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 136 LYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEECCSEE
T ss_pred EECCCCc-cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEccCCc
Confidence 9999985 33221 14688999996553111111277899999999999999874 2 35789999999999863
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.06 E-value=9e-11 Score=94.49 Aligned_cols=78 Identities=17% Similarity=0.076 Sum_probs=33.8
Q ss_pred CCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L 85 (226)
+++++|++++|.+... + ....+++|++|+|+++.+++. ....+.++++|++|+++++. +..+ .+.++++|++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence 3455555555554321 1 123455555555555544211 11123444555555555542 1111 12334555555
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
++++|
T Consensus 113 ~L~~N 117 (251)
T 3m19_A 113 YLGGN 117 (251)
T ss_dssp ECCSS
T ss_pred EcCCC
Confidence 55554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.4e-11 Score=99.45 Aligned_cols=204 Identities=14% Similarity=0.064 Sum_probs=122.2
Q ss_pred CCccccccCCccEEEeccccccc--ccCcc--------CCCcccEEEecceecCHHHHHHH-HhcCCccceeeeeccCCc
Q 040388 3 LPQVAFNAESIVVLELQFCKLES--LRNNV--------TLSSLRKLCSSHVYEDDQVIEDF-VAGCPLIEYMHVFDCGGL 71 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~--~~~~~--------~l~sLk~L~L~~~~~~~~~l~~l-~~~cp~Le~L~l~~c~~l 71 (226)
+|..++.. |++|+++++.+.. .+... ++++|++|+|+++.+++.....+ ..++++|++|+++++.-
T Consensus 57 ~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l- 133 (312)
T 1wwl_A 57 DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW- 133 (312)
T ss_dssp CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-
T ss_pred cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-
Confidence 35555544 7778888777632 11111 47888999998888743322222 36788889998888732
Q ss_pred eEE--ecCC-----CCCcceEEeccCCCceEE----EEecceeeEEEeCCCC--c----cccccccCcccCcEEEeeccc
Q 040388 72 KCL--ELPD-----LNNLKEFKAYDNFRLQRL----HINGVNVCSIDLASRR--T----LSDINVAPCKHLEKLKLSGLY 134 (226)
Q Consensus 72 ~~l--~i~~-----~~~Lk~L~l~~c~~l~~~----~~~~~~L~~L~~~~~~--~----~~~~~~~~~~~L~~L~L~~~~ 134 (226)
..+ .+.+ +++|++|++++|. +..+ ....++|++|++.+.. . +....+..+++|++|++++|.
T Consensus 134 ~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 134 ATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp SSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred cchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 111 0111 2788999998885 2221 1246788888855431 1 112223678899999999998
Q ss_pred cCc--hhHHHHHhcCCCCcEEeccccccceeeccC----ccccceeEEcc-eE-----EEeCCCcceEEEeecce---ee
Q 040388 135 IID--ECPSNQVSKLQFLEYLHIDCCMKLRSAKIS----SRCLKKLFFKG-EF-----MLDTSNLSTFEYQGNLV---SF 199 (226)
Q Consensus 135 it~--~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~----~~~L~~L~l~~-~~-----~i~~p~L~sl~~~g~~~---~~ 199 (226)
++. .....++..+++|+.|+++++.--...... ..+|+.|++++ .+ .+. ++|+.+...++.+ |.
T Consensus 213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC
T ss_pred CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh
Confidence 874 333456678899999999886322211111 25788888876 11 111 6788887777642 22
Q ss_pred ccccccceeeeE
Q 040388 200 SSNALALSQIIL 211 (226)
Q Consensus 200 ~~~~~~l~~~~~ 211 (226)
..+.+.|+.+.+
T Consensus 292 ~~~l~~L~~L~L 303 (312)
T 1wwl_A 292 PDELPQVGNLSL 303 (312)
T ss_dssp TTTSCEEEEEEC
T ss_pred HhhCCCCCEEec
Confidence 114455555444
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.6e-10 Score=100.16 Aligned_cols=53 Identities=17% Similarity=0.002 Sum_probs=34.5
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+++|++|+|++|.+...+. .+++|++|+|++|.++. +....++|+.|++++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L~~N 131 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLWIFGN 131 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEECCSS
T ss_pred cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEECCCC
Confidence 45788888888888764333 67888888888876522 1114456666666655
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-10 Score=98.43 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=86.9
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce--EE--ecCCCCCcceEE
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK--CL--ELPDLNNLKEFK 86 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~--~l--~i~~~~~Lk~L~ 86 (226)
.+|++|++++|.+........+++|++|+++++.+++... ..+.++++|++|++++|.--. .+ .+.++++|++|+
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 5677777777765432222456777777777776643221 223566777777777663211 11 145567777777
Q ss_pred eccCCC---ceE-EEEecceeeEEEeCCCCccccccccCc-ccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccc
Q 040388 87 AYDNFR---LQR-LHINGVNVCSIDLASRRTLSDINVAPC-KHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKL 161 (226)
Q Consensus 87 l~~c~~---l~~-~~~~~~~L~~L~~~~~~~~~~~~~~~~-~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L 161 (226)
+++|.- +.. .....++|++|++.+.... ....... ++|++|++++|.++. .+..+ ..+++|+.|++++| .+
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~L~~L~Ls~N~l~~-ip~~~-~~l~~L~~L~L~~N-~l 456 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCLPPRIKVLDLHSNKIKS-IPKQV-VKLEALQELNVASN-QL 456 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC-GGGGGSCCTTCCEEECCSSCCCC-CCGGG-GGCTTCCEEECCSS-CC
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCC-cchhhhhcccCCEEECCCCcccc-cchhh-hcCCCCCEEECCCC-cC
Confidence 776641 111 1123466777774432110 0111112 577788887777763 22333 36777888877775 34
Q ss_pred eeeccC----ccccceeEEcc
Q 040388 162 RSAKIS----SRCLKKLFFKG 178 (226)
Q Consensus 162 ~~l~i~----~~~L~~L~l~~ 178 (226)
+.+... .++|+.+++.+
T Consensus 457 ~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 457 KSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHHHhccCCcccEEECcC
Confidence 444321 23566666554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-10 Score=95.91 Aligned_cols=168 Identities=20% Similarity=0.165 Sum_probs=113.7
Q ss_pred CCCccccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~ 77 (226)
.+|..++ +++++|++++|.+... .....+++|++|+|+++.++.-. . ...+++|+.|+++++. +..+ .+.
T Consensus 24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~Ls~N~-l~~l~~~~~ 97 (290)
T 1p9a_G 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--V-DGTLPVLGTLDLSHNQ-LQSLPLLGQ 97 (290)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--C-CSCCTTCCEEECCSSC-CSSCCCCTT
T ss_pred cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--C-CCCCCcCCEEECCCCc-CCcCchhhc
Confidence 3566554 6899999999987632 23457899999999998873311 1 2678999999999873 2222 245
Q ss_pred CCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 78 DLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
++++|+.|++++|. ++.+. -..++|++|++.+. .......+..+++|++|++++|.++.. +...+..+++|+
T Consensus 98 ~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~ 175 (290)
T 1p9a_G 98 TLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLD 175 (290)
T ss_dssp TCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCC
Confidence 67899999999884 33221 23578999986543 211222356788999999999988753 234457789999
Q ss_pred EEeccccccceeecc---CccccceeEEcc
Q 040388 152 YLHIDCCMKLRSAKI---SSRCLKKLFFKG 178 (226)
Q Consensus 152 ~L~l~~C~~L~~l~i---~~~~L~~L~l~~ 178 (226)
.|+++++ .++.+.- ....|+.+.+.+
T Consensus 176 ~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 176 TLLLQEN-SLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp EEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred EEECCCC-cCCccChhhcccccCCeEEeCC
Confidence 9999884 3444432 234678888775
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-09 Score=95.28 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=84.2
Q ss_pred ccccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCc--eE-EecCCC
Q 040388 5 QVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGL--KC-LELPDL 79 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l--~~-l~i~~~ 79 (226)
..+..+++|++|++++|.+... .....+++|++|+|+++.+++.. ...+.++++|++|++++|.-- .. -.+.++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 3444566666666666655421 12335666666666666653211 222456666677766665311 00 124456
Q ss_pred CCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 80 NNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
++|++|++++|..+..+. ...++|++|+..+. .......+..+++|++|+++++.++.. ...+...+++|+.|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 201 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYL 201 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc-chhhHhhcccccEE
Confidence 777777777775344332 13567777774321 111223455667777777777765432 33445668888888
Q ss_pred ecccc
Q 040388 154 HIDCC 158 (226)
Q Consensus 154 ~l~~C 158 (226)
+++++
T Consensus 202 ~L~~n 206 (549)
T 2z81_A 202 ELRDT 206 (549)
T ss_dssp EEESC
T ss_pred EccCC
Confidence 88875
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-10 Score=89.84 Aligned_cols=171 Identities=14% Similarity=0.160 Sum_probs=112.9
Q ss_pred CCc-cccccCCccEEEecccc-cccc-c-CccCCCcccEEEecc-eecCHHHHHHHHhcCCccceeeeeccCCceEE-ec
Q 040388 3 LPQ-VAFNAESIVVLELQFCK-LESL-R-NNVTLSSLRKLCSSH-VYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-EL 76 (226)
Q Consensus 3 lP~-~~~~~~sL~~L~L~~c~-~~~~-~-~~~~l~sLk~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i 76 (226)
+|. .+..+++|++|++++|. +... + ...++++|++|++++ +.++.- ....+.++++|++|++++|.- +.+ .+
T Consensus 46 i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l-~~lp~~ 123 (239)
T 2xwt_C 46 IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGL-KMFPDL 123 (239)
T ss_dssp ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECC-CSCCCC
T ss_pred ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCC-cccccc
Confidence 344 44578999999999997 6532 2 345789999999998 655321 112356899999999998842 212 24
Q ss_pred CCCCCcc---eEEeccCCCceEEEE----ecceee-EEEeCCC--CccccccccCcccCcEEEeeccc-cCchhHHHHHh
Q 040388 77 PDLNNLK---EFKAYDNFRLQRLHI----NGVNVC-SIDLASR--RTLSDINVAPCKHLEKLKLSGLY-IIDECPSNQVS 145 (226)
Q Consensus 77 ~~~~~Lk---~L~l~~c~~l~~~~~----~~~~L~-~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~ 145 (226)
.++++|+ .+++++|..++.+.. ..++|+ ++++.+. .......+.. ++|++|++++|. ++... ...+.
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~-~~~~~ 201 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVID-KDAFG 201 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEEC-TTTTT
T ss_pred ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCC-HHHhh
Confidence 5667777 999999854554432 367888 9985442 1111112333 789999999994 76532 34456
Q ss_pred cC-CCCcEEeccccccceeeccC-ccccceeEEcc
Q 040388 146 KL-QFLEYLHIDCCMKLRSAKIS-SRCLKKLFFKG 178 (226)
Q Consensus 146 ~~-~~Le~L~l~~C~~L~~l~i~-~~~L~~L~l~~ 178 (226)
.+ ++|+.|++++ ..++.+... ..+|+.|.+.+
T Consensus 202 ~l~~~L~~L~l~~-N~l~~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 202 GVYSGPSLLDVSQ-TSVTALPSKGLEHLKELIARN 235 (239)
T ss_dssp TCSBCCSEEECTT-CCCCCCCCTTCTTCSEEECTT
T ss_pred ccccCCcEEECCC-CccccCChhHhccCceeeccC
Confidence 77 8999999998 445555433 35677777654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-10 Score=105.92 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=100.2
Q ss_pred CCcccc--ccCCccEEEecccccc-cc-cCccCCCcccEEEeccee-cCH-H---HHHHHH---hcCCccceeeeeccCC
Q 040388 3 LPQVAF--NAESIVVLELQFCKLE-SL-RNNVTLSSLRKLCSSHVY-EDD-Q---VIEDFV---AGCPLIEYMHVFDCGG 70 (226)
Q Consensus 3 lP~~~~--~~~sL~~L~L~~c~~~-~~-~~~~~l~sLk~L~L~~~~-~~~-~---~l~~l~---~~cp~Le~L~l~~c~~ 70 (226)
+|..+. .+++|++|+|++|.+. .. .....+++|+.|+|+++. +++ . .+..+. ..+|+|+.|++++|.-
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 889987 9999999999999864 22 334579999999999998 666 2 233322 4567999999998843
Q ss_pred ceEE----ecCCCCCcceEEeccCCCceEEE--EecceeeEEEeCCC-CccccccccCccc-CcEEEeeccccCchhHHH
Q 040388 71 LKCL----ELPDLNNLKEFKAYDNFRLQRLH--INGVNVCSIDLASR-RTLSDINVAPCKH-LEKLKLSGLYIIDECPSN 142 (226)
Q Consensus 71 l~~l----~i~~~~~Lk~L~l~~c~~l~~~~--~~~~~L~~L~~~~~-~~~~~~~~~~~~~-L~~L~L~~~~it~~~~~~ 142 (226)
- .+ .++++++|+.|++++|. +..+. ...++|+.|++.+. ....+..+..+++ |++|++++|.++. .+ .
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp-~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IP-N 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CC-S
T ss_pred C-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-Cc-h
Confidence 2 33 25678889999998885 22222 23578888885443 1122233566677 8888888887762 22 2
Q ss_pred HHhcC--CCCcEEecccc
Q 040388 143 QVSKL--QFLEYLHIDCC 158 (226)
Q Consensus 143 l~~~~--~~Le~L~l~~C 158 (226)
.+... ++|+.|+++++
T Consensus 637 ~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CCCTTCSSCEEEEECCSS
T ss_pred hhhccccCCCCEEECcCC
Confidence 22222 23666766665
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=102.41 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=39.1
Q ss_pred CCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L 85 (226)
++|++|+|++|.+... ....++++|++|+|+++......-...+.++++|+.|++++|. +..+ .+.++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEe
Confidence 4666666666665421 2234566666666666532111101124556666666666553 2222 23445555555
Q ss_pred EeccC
Q 040388 86 KAYDN 90 (226)
Q Consensus 86 ~l~~c 90 (226)
++++|
T Consensus 103 ~Ls~n 107 (844)
T 3j0a_A 103 RLYFC 107 (844)
T ss_dssp ECTTC
T ss_pred eCcCC
Confidence 55555
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=108.33 Aligned_cols=204 Identities=10% Similarity=0.063 Sum_probs=111.7
Q ss_pred CCCccccccCCccEEEecccc-ccc--cc--------CccCCCcccEEEecceecCHHHHHH--HHhcCCccceeeeecc
Q 040388 2 NLPQVAFNAESIVVLELQFCK-LES--LR--------NNVTLSSLRKLCSSHVYEDDQVIED--FVAGCPLIEYMHVFDC 68 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~-~~~--~~--------~~~~l~sLk~L~L~~~~~~~~~l~~--l~~~cp~Le~L~l~~c 68 (226)
.+|..+..+++|++|+|++|. +.. .+ ....+++|+.|+|+++.++ .+.. .+.++++|+.|++++|
T Consensus 506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTS
T ss_pred cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCC
Confidence 468888888889999988886 431 11 2234668888888888775 3333 4677888888888776
Q ss_pred CCceEE-ecCCCCC------------------------cceEEeccCCCceEEE---Ee--cceeeEEEeCCC--Ccc-c
Q 040388 69 GGLKCL-ELPDLNN------------------------LKEFKAYDNFRLQRLH---IN--GVNVCSIDLASR--RTL-S 115 (226)
Q Consensus 69 ~~l~~l-~i~~~~~------------------------Lk~L~l~~c~~l~~~~---~~--~~~L~~L~~~~~--~~~-~ 115 (226)
.-- .+ .++.+++ |+.|++++|. +..+. .. .++|+.|++.+. ... .
T Consensus 584 ~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 584 KVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred Ccc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 311 11 2233344 4445554442 11111 00 123555553321 000 0
Q ss_pred c--cccc--CcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeeccC---c--------cccceeEEcc-e
Q 040388 116 D--INVA--PCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS---S--------RCLKKLFFKG-E 179 (226)
Q Consensus 116 ~--~~~~--~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~---~--------~~L~~L~l~~-~ 179 (226)
. ..+. .+++|+.|++++|.++. .+..++..+++|+.|+++++ .++.+... . ++|+.|++.+ .
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred cchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC
Confidence 0 0111 33478888888887773 34555667888888888875 33333221 0 1677777765 1
Q ss_pred ---E--EE---eCCCcceEEEeecc---eeecc-ccccceeeeE
Q 040388 180 ---F--ML---DTSNLSTFEYQGNL---VSFSS-NALALSQIIL 211 (226)
Q Consensus 180 ---~--~i---~~p~L~sl~~~g~~---~~~~~-~~~~l~~~~~ 211 (226)
+ .+ ..|+|+.|...++. +|... +.+.|+.+.+
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI 783 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEEC
T ss_pred CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEEC
Confidence 1 11 45677777766653 23333 4455555554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=94.92 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=63.4
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC---------CceEE-------
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG---------GLKCL------- 74 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~---------~l~~l------- 74 (226)
++|++|++++|.+...+. ..++|++|+++++.+++ +.. +.++++|++|++++|. .++.+
T Consensus 111 ~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 185 (454)
T ss_dssp TTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred CCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcC
Confidence 344555555444432111 11456666666555422 221 4455555555555542 12222
Q ss_pred ----ecCCCCCcceEEeccCCCceEEEEecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCC
Q 040388 75 ----ELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQF 149 (226)
Q Consensus 75 ----~i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~ 149 (226)
.+.++++|+.|++++|. +..+....++|++|++.+. ....+ .+..+++|++|++++|.++.- . ...++
T Consensus 186 ~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l--~---~~~~~ 258 (454)
T 1jl5_A 186 EELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTL--P---DLPPS 258 (454)
T ss_dssp SSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSC--C---SCCTT
T ss_pred CcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcc--c---ccccc
Confidence 23345666666666663 2222222346666664332 11111 245666777777777665541 1 12355
Q ss_pred CcEEecccc
Q 040388 150 LEYLHIDCC 158 (226)
Q Consensus 150 Le~L~l~~C 158 (226)
|+.|+++++
T Consensus 259 L~~L~l~~N 267 (454)
T 1jl5_A 259 LEALNVRDN 267 (454)
T ss_dssp CCEEECCSS
T ss_pred cCEEECCCC
Confidence 566655554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.2e-11 Score=97.65 Aligned_cols=148 Identities=13% Similarity=0.028 Sum_probs=75.3
Q ss_pred cCCccEEEeccccccc-ccC-c--cCCCcccEEEecceecCHH--HHH-HHHhcCCccceeeeeccCCceE--EecCCCC
Q 040388 10 AESIVVLELQFCKLES-LRN-N--VTLSSLRKLCSSHVYEDDQ--VIE-DFVAGCPLIEYMHVFDCGGLKC--LELPDLN 80 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~-~~~-~--~~l~sLk~L~L~~~~~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~--l~i~~~~ 80 (226)
.++|++|++++|.+.. .+. . ..+++|++|+|+++.+++. .+. .-+..+++|++|++++|.-... -.+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3558888888877642 122 2 4577888888888777431 011 1234677888888877643111 1244567
Q ss_pred CcceEEeccCCCceE-------EEEecceeeEEEeCCCCcc--ccc---cccCcccCcEEEeeccccCchhHHHHHhcC-
Q 040388 81 NLKEFKAYDNFRLQR-------LHINGVNVCSIDLASRRTL--SDI---NVAPCKHLEKLKLSGLYIIDECPSNQVSKL- 147 (226)
Q Consensus 81 ~Lk~L~l~~c~~l~~-------~~~~~~~L~~L~~~~~~~~--~~~---~~~~~~~L~~L~L~~~~it~~~~~~l~~~~- 147 (226)
+|++|++++|..... .....++|++|++.+.... ... .+..+++|++|++++|.+++..+..+ ..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-Hhcc
Confidence 778888777742110 0013455555553332100 000 12344556666666665554322111 222
Q ss_pred --CCCcEEecccc
Q 040388 148 --QFLEYLHIDCC 158 (226)
Q Consensus 148 --~~Le~L~l~~C 158 (226)
++|+.|+++++
T Consensus 249 ~~~~L~~L~Ls~N 261 (310)
T 4glp_A 249 WSSALNSLNLSFA 261 (310)
T ss_dssp CCTTCCCEECCSS
T ss_pred CcCcCCEEECCCC
Confidence 45666666553
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-10 Score=101.79 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=31.7
Q ss_pred CccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeec
Q 040388 12 SIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFD 67 (226)
Q Consensus 12 sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~ 67 (226)
+|++|++++|.+... .....+++|++|+++++.+++. ....+.++++|+.|++++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccc
Confidence 477888877776421 2234577777777777765321 111245566666666654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-10 Score=101.68 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=31.5
Q ss_pred cccCcccCcEEEeeccccCchh-HHHHHhcCCCCcEEeccccc
Q 040388 118 NVAPCKHLEKLKLSGLYIIDEC-PSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~-~~~l~~~~~~Le~L~l~~C~ 159 (226)
.+..+++|++|++++|.++... ....+..+++|+.|+++++.
T Consensus 372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 4567889999999999887621 22345778899999998764
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-10 Score=101.00 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=30.0
Q ss_pred ccccCCccEEEeccccccc--c-cCccCCC----cccEEEecceecCH---HHHHHHHhcCCccceeeeecc
Q 040388 7 AFNAESIVVLELQFCKLES--L-RNNVTLS----SLRKLCSSHVYEDD---QVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~--~-~~~~~l~----sLk~L~L~~~~~~~---~~l~~l~~~cp~Le~L~l~~c 68 (226)
+..+++|++|++++|.+.. . .....++ +|++|+|++|.+++ ..+...+..+++|++|++++|
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 3445556666666555431 0 0011122 46666666665533 233444555666666666554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-10 Score=86.35 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=73.7
Q ss_pred CCCccccccCCccEEEeccccccc--ccCccCCCcccEEEeccee-cCHHHHHHHHhc---CCccceeeeeccCCceEE-
Q 040388 2 NLPQVAFNAESIVVLELQFCKLES--LRNNVTLSSLRKLCSSHVY-EDDQVIEDFVAG---CPLIEYMHVFDCGGLKCL- 74 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~--~~~~~~l~sLk~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~l~~c~~l~~l- 74 (226)
.||......-.|++|++++|.+.. .....++++|+.|+|++|. ++|.++..+... |+.|++|++++|.+++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 466654445589999999998652 1223479999999999997 599999998863 889999999999876432
Q ss_pred --ecCCCCCcceEEeccCCCceE
Q 040388 75 --ELPDLNNLKEFKAYDNFRLQR 95 (226)
Q Consensus 75 --~i~~~~~Lk~L~l~~c~~l~~ 95 (226)
.+..|++|++|++++|..+++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 345689999999999976554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=98.98 E-value=6.7e-11 Score=101.01 Aligned_cols=150 Identities=13% Similarity=0.041 Sum_probs=83.5
Q ss_pred cccCCccEEEeccccccc-----cc-CccCCCcccEEEecceecCHHH---HHHHHhcC---------CccceeeeeccC
Q 040388 8 FNAESIVVLELQFCKLES-----LR-NNVTLSSLRKLCSSHVYEDDQV---IEDFVAGC---------PLIEYMHVFDCG 69 (226)
Q Consensus 8 ~~~~sL~~L~L~~c~~~~-----~~-~~~~l~sLk~L~L~~~~~~~~~---l~~l~~~c---------p~Le~L~l~~c~ 69 (226)
..+++|++|+|++|.+.. .+ ....+++|++|+|++|.+++.. +...+..+ |.|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 567888888888887653 11 1235788888888888774333 33333344 788888887763
Q ss_pred C----ceEE--ecCCCCCcceEEeccCCCceE---------EEEecceeeEEEeCCCCc------cccccccCcccCcEE
Q 040388 70 G----LKCL--ELPDLNNLKEFKAYDNFRLQR---------LHINGVNVCSIDLASRRT------LSDINVAPCKHLEKL 128 (226)
Q Consensus 70 ~----l~~l--~i~~~~~Lk~L~l~~c~~l~~---------~~~~~~~L~~L~~~~~~~------~~~~~~~~~~~L~~L 128 (226)
- +..+ .+..+++|++|++++|. +.. .....++|++|++.+... .....+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 2 1110 12235677777777663 210 111346677776443211 011124556677777
Q ss_pred EeeccccCchhHHH---HHh--cCCCCcEEecccc
Q 040388 129 KLSGLYIIDECPSN---QVS--KLQFLEYLHIDCC 158 (226)
Q Consensus 129 ~L~~~~it~~~~~~---l~~--~~~~Le~L~l~~C 158 (226)
++++|.+++..... .+. .+++|+.|++++|
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 77777766543222 121 2666777777665
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-10 Score=103.81 Aligned_cols=171 Identities=16% Similarity=0.100 Sum_probs=96.1
Q ss_pred CccccccCCccEEEeccccccc-c--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC--ce--EEec
Q 040388 4 PQVAFNAESIVVLELQFCKLES-L--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG--LK--CLEL 76 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~-~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~--l~--~l~i 76 (226)
|..+..+++|++|++++|.+.. . ....++++|++|+++++.++.-. ...+..+|.|+.|++++|.- +. .-.+
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC-TTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC-hhhhhcCcccccchhccccccccccCCccc
Confidence 4555678899999999988741 1 23356889999999888762111 11245678888888877632 11 1124
Q ss_pred CCCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--Ccc--------ccccccCcccCcEEEeeccccCchhHHH
Q 040388 77 PDLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTL--------SDINVAPCKHLEKLKLSGLYIIDECPSN 142 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~--------~~~~~~~~~~L~~L~L~~~~it~~~~~~ 142 (226)
.++++|+.|++++|. +..+. ...++|++|++.+. ... ....+..+++|++|++++|.++.. +..
T Consensus 477 ~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~ 554 (680)
T 1ziw_A 477 QPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVE 554 (680)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC-CTT
T ss_pred ccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC-CHH
Confidence 456777777777663 22211 13456666664332 000 001245666777777777666532 223
Q ss_pred HHhcCCCCcEEeccccccceeeccC----ccccceeEEcc
Q 040388 143 QVSKLQFLEYLHIDCCMKLRSAKIS----SRCLKKLFFKG 178 (226)
Q Consensus 143 l~~~~~~Le~L~l~~C~~L~~l~i~----~~~L~~L~l~~ 178 (226)
.+.++++|+.|+++++ .++.+... .++|+.|++.+
T Consensus 555 ~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred HcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCC
Confidence 3456666777776653 33333321 14566666654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.9e-10 Score=98.09 Aligned_cols=186 Identities=11% Similarity=0.029 Sum_probs=107.6
Q ss_pred CCCccc-----cccCCccEEEecccccccccCc-cC---CCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce
Q 040388 2 NLPQVA-----FNAESIVVLELQFCKLESLRNN-VT---LSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK 72 (226)
Q Consensus 2 ~lP~~~-----~~~~sL~~L~L~~c~~~~~~~~-~~---l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~ 72 (226)
.+|..+ ..+++|+.+++++|.+..+... .. -++|+.|+++++.+.+..+ ...++.|++|++++|.--.
T Consensus 262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~ 338 (520)
T 2z7x_B 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTD 338 (520)
T ss_dssp CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCT
T ss_pred ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccCh
Confidence 356666 5677788888887776321010 11 1468888888877632211 2567888888888774211
Q ss_pred --EEecCCCCCcceEEeccCCCceE---E---EEecceeeEEEeCCC--Cc-cccccccCcccCcEEEeeccccCchhHH
Q 040388 73 --CLELPDLNNLKEFKAYDNFRLQR---L---HINGVNVCSIDLASR--RT-LSDINVAPCKHLEKLKLSGLYIIDECPS 141 (226)
Q Consensus 73 --~l~i~~~~~Lk~L~l~~c~~l~~---~---~~~~~~L~~L~~~~~--~~-~~~~~~~~~~~L~~L~L~~~~it~~~~~ 141 (226)
.-.+.++++|+.|++++|. +.. + ....++|++|++.+. .. .....+..+++|++|++++|.+++..+.
T Consensus 339 ~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 339 TVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417 (520)
T ss_dssp TTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred hhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh
Confidence 1124567788888888774 221 1 124577888885442 11 1111245667888888888877764432
Q ss_pred HHHhcC-CCCcEEeccccccceeecc---CccccceeEEcc-eE-------EEeCCCcceEEEeecc
Q 040388 142 NQVSKL-QFLEYLHIDCCMKLRSAKI---SSRCLKKLFFKG-EF-------MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 142 ~l~~~~-~~Le~L~l~~C~~L~~l~i---~~~~L~~L~l~~-~~-------~i~~p~L~sl~~~g~~ 196 (226)
.+ ++|+.|++++| .++.++- ..++|+.|++.+ .+ .-..++|+.+...|+.
T Consensus 418 ----~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 418 ----CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ----SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 23 67888888875 3333321 235677777776 11 1234677777777663
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.6e-10 Score=92.04 Aligned_cols=151 Identities=13% Similarity=0.146 Sum_probs=97.8
Q ss_pred CccccccCCccEEEecccccccccC-----------------------ccCCCcccEEEecceecCHH-HHHHHHhcCCc
Q 040388 4 PQVAFNAESIVVLELQFCKLESLRN-----------------------NVTLSSLRKLCSSHVYEDDQ-VIEDFVAGCPL 59 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~~-----------------------~~~l~sLk~L~L~~~~~~~~-~l~~l~~~cp~ 59 (226)
|..+..+++|++|++++|.+...+. ...+++|+.|+++++.++.. .....+.++++
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 4555566777777777665432111 23466777777777766321 22334678999
Q ss_pred cceeeeeccCCceEEecCCCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeecc
Q 040388 60 IEYMHVFDCGGLKCLELPDLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGL 133 (226)
Q Consensus 60 Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~ 133 (226)
|++|++++|. +..+...-.++|++|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|
T Consensus 173 L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 173 LSYIRIADTN-ITTIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CCEEECCSSC-CCSCCSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred cCEEECCCCc-cccCCccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 9999999874 332322223789999999884 44332 13578999996543 1112224677899999999999
Q ss_pred ccCchhHHHHHhcCCCCcEEecccc
Q 040388 134 YIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 134 ~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
.++.- ...+..+++|+.|+++++
T Consensus 251 ~l~~l--p~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 251 KLVKV--PGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CCSSC--CTTTTTCSSCCEEECCSS
T ss_pred cCccC--ChhhccCCCcCEEECCCC
Confidence 98742 233467899999999985
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-10 Score=86.00 Aligned_cols=129 Identities=16% Similarity=0.080 Sum_probs=77.1
Q ss_pred CCccEEEecccccc--cccCc-cCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLE--SLRNN-VTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~--~~~~~-~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L 85 (226)
++|++|++++|.+. ..+.. ..+++|+.|++++|.+++- ..+..+++|+.|++++|.--..+ .+.++++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56777777777664 32222 4567777777777766332 33455666666666665321111 01124556666
Q ss_pred EeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhH--HHHHhcCCCCcEEecccccc
Q 040388 86 KAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECP--SNQVSKLQFLEYLHIDCCMK 160 (226)
Q Consensus 86 ~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~--~~l~~~~~~Le~L~l~~C~~ 160 (226)
++++|. +.. .+....+..+++|++|++++|.+++... ...+..+++|+.|++.+|..
T Consensus 101 ~Ls~N~-l~~-----------------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNK-LKD-----------------ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSS-CCS-----------------SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCc-cCc-----------------chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 655552 111 0111245678899999999999876432 24678899999999998754
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-09 Score=94.93 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=87.3
Q ss_pred CCccccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LP 77 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~ 77 (226)
+|..+- +++++|+|++|.+... + ...++++|++|+|++|.++.- ....+.++++|++|++++| .++.+. +.
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~ 121 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGN-PIQSLALGAFS 121 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTC-CCCEECGGGGT
T ss_pred cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCC-cCCCCCHHHhc
Confidence 454432 4789999999987643 2 345789999999999876310 0113567899999999987 355553 56
Q ss_pred CCCCcceEEeccCC--CceEE-EEecceeeEEEeCCC---CccccccccCcccCcEEEeeccccCch
Q 040388 78 DLNNLKEFKAYDNF--RLQRL-HINGVNVCSIDLASR---RTLSDINVAPCKHLEKLKLSGLYIIDE 138 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~--~l~~~-~~~~~~L~~L~~~~~---~~~~~~~~~~~~~L~~L~L~~~~it~~ 138 (226)
++++|++|++++|. .+... .-..++|++|++.+. .......+..+++|++|++++|.++..
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 78899999999884 22211 124678888885432 111223456678888888888877653
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.7e-10 Score=94.11 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=44.2
Q ss_pred CccccccCCccEEEeccccccccc------CccCCC-cccEEEecceecC---HHHHHHHHhcC-CccceeeeeccC
Q 040388 4 PQVAFNAESIVVLELQFCKLESLR------NNVTLS-SLRKLCSSHVYED---DQVIEDFVAGC-PLIEYMHVFDCG 69 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~------~~~~l~-sLk~L~L~~~~~~---~~~l~~l~~~c-p~Le~L~l~~c~ 69 (226)
|..+...++|++|+|++|.+.... ....++ +|++|+|++|.++ ...+..++..+ +.|++|++++|.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 334444566899999988875321 123567 8899999888874 33455555554 888888888874
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.6e-10 Score=90.70 Aligned_cols=159 Identities=15% Similarity=0.138 Sum_probs=112.4
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEec
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKAY 88 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l~ 88 (226)
..+++.++++++.+...+....+++|++|+++++.++. +. -+..+++|++|++++|. +..+ .+.++++|+.|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECC
Confidence 44567777888877643344578999999999998742 12 26789999999999883 2222 26788999999999
Q ss_pred cCC--CceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec-
Q 040388 89 DNF--RLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK- 165 (226)
Q Consensus 89 ~c~--~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~- 165 (226)
+|. .+..+. .++|++|++.+........+..+++|++|++++|.+++.. .+..+++|+.|+++++. ++.+.
T Consensus 94 ~N~l~~l~~~~--~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~-i~~~~~ 167 (263)
T 1xeu_A 94 RNRLKNLNGIP--SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNE-ITNTGG 167 (263)
T ss_dssp SSCCSCCTTCC--CSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSC-CCBCTT
T ss_pred CCccCCcCccc--cCcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCc-CcchHH
Confidence 985 222222 1899999965531111124678899999999999998742 35789999999999863 33332
Q ss_pred cC-ccccceeEEcc
Q 040388 166 IS-SRCLKKLFFKG 178 (226)
Q Consensus 166 i~-~~~L~~L~l~~ 178 (226)
+. .++|+.|++.+
T Consensus 168 l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 168 LTRLKKVNWIDLTG 181 (263)
T ss_dssp STTCCCCCEEEEEE
T ss_pred hccCCCCCEEeCCC
Confidence 22 35788888876
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-09 Score=95.35 Aligned_cols=153 Identities=13% Similarity=0.011 Sum_probs=85.7
Q ss_pred cccccCCccEEEecccccccc------c-CccCCCcccEEEecceecCHHH---HHHHHhcCCccceeeeeccCCc----
Q 040388 6 VAFNAESIVVLELQFCKLESL------R-NNVTLSSLRKLCSSHVYEDDQV---IEDFVAGCPLIEYMHVFDCGGL---- 71 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~------~-~~~~l~sLk~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~c~~l---- 71 (226)
.+..+++|++|++++|.+... + ....+++|++|++++|.+++.. +...+..++.|++|++++|.--
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 334455666666666654310 0 0113566666666666665443 3333445666666666665310
Q ss_pred eEE---ecCCCCCcceEEeccCCCceE-----E---EEecceeeEEEeCCCCc-c--ccc---cc-cCcccCcEEEeecc
Q 040388 72 KCL---ELPDLNNLKEFKAYDNFRLQR-----L---HINGVNVCSIDLASRRT-L--SDI---NV-APCKHLEKLKLSGL 133 (226)
Q Consensus 72 ~~l---~i~~~~~Lk~L~l~~c~~l~~-----~---~~~~~~L~~L~~~~~~~-~--~~~---~~-~~~~~L~~L~L~~~ 133 (226)
..+ -....++|++|++++|. +.. + ....++|++|++.+... . ... .+ ...++|++|++++|
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 000 00112588888888885 221 1 11347899998654311 0 000 11 12679999999999
Q ss_pred ccCchh---HHHHHhcCCCCcEEeccccc
Q 040388 134 YIIDEC---PSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 134 ~it~~~---~~~l~~~~~~Le~L~l~~C~ 159 (226)
.+++.. +...+..+++|+.|++++|.
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 998743 23445678999999999873
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-09 Score=87.24 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=110.0
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEe
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKA 87 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l 87 (226)
++.++++++++.+...+... .+++++|+|+++.++.-. ...+.++++|++|+++++. +..+ .+.++++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEEC
Confidence 56789999999887544332 379999999999873321 1236788999999999973 3322 2466899999999
Q ss_pred ccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccc
Q 040388 88 YDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKL 161 (226)
Q Consensus 88 ~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L 161 (226)
++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.++... ...+..+++|+.|+++++ .+
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N-~l 167 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTN-QL 167 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CC
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCC-cC
Confidence 9885 33222 24578999985543 2112223567889999999999887542 234567889999999885 33
Q ss_pred eeecc---C-ccccceeEEcc
Q 040388 162 RSAKI---S-SRCLKKLFFKG 178 (226)
Q Consensus 162 ~~l~i---~-~~~L~~L~l~~ 178 (226)
+.+.. . .++|+.|++.+
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHHHHhCCCCCCEEEeeC
Confidence 43331 1 25677887765
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.3e-09 Score=81.55 Aligned_cols=131 Identities=15% Similarity=-0.016 Sum_probs=79.4
Q ss_pred ccccCCccEEEecccccccccCccCC-CcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCc
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTL-SSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNL 82 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l-~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~L 82 (226)
...+.+|++|++++|.+...+....+ ++|+.|+|+++.+++- .-+.++++|+.|++++|. +..+. +.++++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 35677788888888876643333333 4788888877776431 234556667777766652 33331 1345666
Q ss_pred ceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchh--HHHHHhcCCCCcEEeccccc
Q 040388 83 KEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDEC--PSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 83 k~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~--~~~l~~~~~~Le~L~l~~C~ 159 (226)
+.|++++|. +.. .+....+..+++|++|++++|.++... ....+..+++|+.|++.++.
T Consensus 91 ~~L~L~~N~-i~~-----------------~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNS-LVE-----------------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCC-CCC-----------------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCc-CCc-----------------chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666552 111 000013567889999999999886532 12256788999999988764
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.8e-10 Score=83.46 Aligned_cols=126 Identities=16% Similarity=0.067 Sum_probs=75.7
Q ss_pred cCCccEEEecccccc--ccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcce
Q 040388 10 AESIVVLELQFCKLE--SLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKE 84 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~--~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~ 84 (226)
.++|++|++++|.+. ..+ ....+++|+.|+++++.+++- ..+.++++|+.|++++|.--..+ .+.++++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 357888888888765 322 234678888888888776332 33566677777777766321101 1122566666
Q ss_pred EEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhH--HHHHhcCCCCcEEecc
Q 040388 85 FKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECP--SNQVSKLQFLEYLHID 156 (226)
Q Consensus 85 L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~--~~l~~~~~~Le~L~l~ 156 (226)
|++++|. +..+ +....+..+++|++|++++|.+++... ...+..+++|+.|++.
T Consensus 93 L~ls~N~-i~~~-----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-IKDL-----------------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-CCSH-----------------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-CCCh-----------------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666552 1110 001235677888888888888765432 2456778888888765
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.2e-09 Score=94.16 Aligned_cols=162 Identities=16% Similarity=0.116 Sum_probs=90.3
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-----ecCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-----ELPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-----~i~~~~~Lk~L 85 (226)
.+|++|++++|.+........+++|++|+++++.+++.. ...+.++++|++|++++|. +..+ .+.++++|+.|
T Consensus 331 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV-FQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT-TTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEE
T ss_pred CcceEEEccCCCcccccCccCCCCceEEECCCCccccch-hhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEE
Confidence 567777777777653222245777777777777764322 1224567777777777762 2221 14556777777
Q ss_pred EeccCCC---ce-EEEEecceeeEEEeCCCCccccccccCc-ccCcEEEeeccccCchhHHHHHhcCCCCcEEecccccc
Q 040388 86 KAYDNFR---LQ-RLHINGVNVCSIDLASRRTLSDINVAPC-KHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMK 160 (226)
Q Consensus 86 ~l~~c~~---l~-~~~~~~~~L~~L~~~~~~~~~~~~~~~~-~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~ 160 (226)
++++|.- +. ......++|++|++.+.... ...+... ++|++|++++|.++. .+..+. .+++|+.|+++++ .
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~~L~~L~L~~N~l~~-ip~~~~-~l~~L~~L~L~~N-~ 484 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-GSVFRCLPPKVKVLDLHNNRIMS-IPKDVT-HLQALQELNVASN-Q 484 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-GGGGSSCCTTCSEEECCSSCCCC-CCTTTT-SSCCCSEEECCSS-C
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCC-cchhhhhcCcCCEEECCCCcCcc-cChhhc-CCCCCCEEECCCC-C
Confidence 7777641 11 11223567777774442110 1112222 577888888777763 222333 6777888887774 3
Q ss_pred ceeeccC----ccccceeEEcc
Q 040388 161 LRSAKIS----SRCLKKLFFKG 178 (226)
Q Consensus 161 L~~l~i~----~~~L~~L~l~~ 178 (226)
++.+... .++|+.+++.+
T Consensus 485 l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 485 LKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCCCCTTSTTTCTTCCCEECCS
T ss_pred CCCCCHHHHhcCCCCCEEEecC
Confidence 4444321 24566666665
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-08 Score=88.92 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=40.9
Q ss_pred CCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
+| .+..+++|++|++++|.+...+. ..++|++|+++++.++. +.. +.++++|++|++++|
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNN 205 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCC
Confidence 56 46678889999999887763222 34688888888877633 222 566777777777766
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.8e-09 Score=83.34 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=24.3
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+..+++|++|++++|.++... ...+..+++|+.|++.+.
T Consensus 131 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 131 IERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp GGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTS
T ss_pred cccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCC
Confidence 456667777777777765432 233456677777777653
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.6e-09 Score=81.89 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=62.5
Q ss_pred CCccEEEeccccccccc-C-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceE
Q 040388 11 ESIVVLELQFCKLESLR-N-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEF 85 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~-~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L 85 (226)
++|++|++++|.+...+ . ...+++|++|+++++.++. .....+.++++|++|++++|. +..+. +.++++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEE
Confidence 35666666666654221 1 2345666666666665521 011123455666666666552 22211 2344555555
Q ss_pred EeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 86 KAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 86 ~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+++++. +.. .....+..+++|++|++++|.+++.. ...+..+++|+.|++.++
T Consensus 106 ~L~~N~-l~~------------------~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 106 ALNTNQ-LQS------------------LPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSC-CCC------------------CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSC
T ss_pred EcCCCc-Ccc------------------cCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCC
Confidence 555442 111 01112345667777777777665422 233455667777777664
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-09 Score=90.79 Aligned_cols=169 Identities=13% Similarity=0.146 Sum_probs=112.2
Q ss_pred CccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--------------
Q 040388 4 PQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG-------------- 69 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~-------------- 69 (226)
|..+..+++|++|++++|.+...+... +++|++|+++++.++.- ....+.++++|+.|+++++.
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred HhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 556677899999999999876433322 38999999999877321 12235778899999988763
Q ss_pred CceEEecCC----------CCCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeecc
Q 040388 70 GLKCLELPD----------LNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGL 133 (226)
Q Consensus 70 ~l~~l~i~~----------~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~ 133 (226)
.++.+++++ .++|++|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ccCEEECcCCCCCccCccccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 233333332 2578889988874 22221 14578999885543 2222224678899999999999
Q ss_pred ccCchhHHHHHhcCCCCcEEeccccccceeeccC----------ccccceeEEcc
Q 040388 134 YIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS----------SRCLKKLFFKG 178 (226)
Q Consensus 134 ~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~----------~~~L~~L~l~~ 178 (226)
.++.- + ..+..+++|+.|+++++ .++.+... ...|+.+.+.+
T Consensus 252 ~l~~l-p-~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 252 KLSRV-P-AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CCCBC-C-TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred cCeec-C-hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeec
Confidence 98742 2 33578999999999985 34444211 24577888776
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.82 E-value=8.9e-09 Score=81.31 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=22.7
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+..+++|++|++++|.++... ...+..+++|+.|++.+.
T Consensus 124 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCC
Confidence 455666777777777665432 122345666666666653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.79 E-value=5e-09 Score=78.91 Aligned_cols=118 Identities=17% Similarity=0.095 Sum_probs=84.8
Q ss_pred CCCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE----ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL----ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l----~i~ 77 (226)
.+|..+..+++|++|++++|.+........+++|++|+|++|.+++. +.....++|+|+.|++++|. +..+ .+.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh
Confidence 46777778999999999999976444455799999999999998443 45567779999999999983 3322 345
Q ss_pred CCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCc
Q 040388 78 DLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
++++|+.|++++|. +..+ + ......+..+++|++|++++|.+++
T Consensus 118 ~l~~L~~L~l~~N~-l~~~----~-----------~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 118 KLECLKSLDLFNCE-VTNL----N-----------DYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp SCSCCCEEECCSSG-GGTS----T-----------THHHHHHTTCSSCCEETTEETTSCB
T ss_pred cCCCCCEEEeeCCc-Ccch----H-----------HHHHHHHHhCccCcEecCCCCChhh
Confidence 67888888888773 2110 0 0000135678889999998887644
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=84.85 Aligned_cols=146 Identities=14% Similarity=0.065 Sum_probs=100.0
Q ss_pred ccccCCccEEEecccccccc--cCccCCCcccEEEecceecCH-HHHHHH--HhcCCccceeeeeccCCceEEe------
Q 040388 7 AFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDD-QVIEDF--VAGCPLIEYMHVFDCGGLKCLE------ 75 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~-~~l~~l--~~~cp~Le~L~l~~c~~l~~l~------ 75 (226)
+..+++|++|++++|.+... .....+++|++|+|++|.+.. ..+..- ...+|+|++|++++|. ++.+.
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHH
Confidence 34688999999999998632 233479999999999998743 333222 3578999999999983 32221
Q ss_pred cCCCCCcceEEeccCCCceEE----EEec---ceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCC
Q 040388 76 LPDLNNLKEFKAYDNFRLQRL----HING---VNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQ 148 (226)
Q Consensus 76 i~~~~~Lk~L~l~~c~~l~~~----~~~~---~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~ 148 (226)
+.++++|++|++++|. +... ...+ ++|++|++.+.... .+...-+++|++|++++|.++... ....++
T Consensus 220 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~~---~~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRAP---QPDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSCC---CTTSCC
T ss_pred HhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCCc---hhhhCC
Confidence 2456899999999985 2221 1122 79999996543111 111122479999999999998631 146789
Q ss_pred CCcEEecccc
Q 040388 149 FLEYLHIDCC 158 (226)
Q Consensus 149 ~Le~L~l~~C 158 (226)
+|+.|++++.
T Consensus 295 ~L~~L~L~~N 304 (310)
T 4glp_A 295 EVDNLTLDGN 304 (310)
T ss_dssp CCSCEECSST
T ss_pred CccEEECcCC
Confidence 9999999874
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.77 E-value=4e-09 Score=88.95 Aligned_cols=88 Identities=15% Similarity=0.187 Sum_probs=63.7
Q ss_pred CCCccccccCCccEEEeccccccccc-C-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---c
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR-N-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---L 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~-~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i 76 (226)
.+|..+. +++++|+|++|.+...+ . ..++++|++|+|+++.+.+..-...+.+++++.++...++.++..+. +
T Consensus 23 ~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 3676653 58999999999987432 2 45799999999999876221111235677888887777777777763 4
Q ss_pred CCCCCcceEEeccCC
Q 040388 77 PDLNNLKEFKAYDNF 91 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~ 91 (226)
.++++|++++++++.
T Consensus 101 ~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 101 QNLPNLQYLLISNTG 115 (350)
T ss_dssp CCCTTCCEEEEEEEC
T ss_pred hhccccccccccccc
Confidence 668899999998874
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.3e-09 Score=88.53 Aligned_cols=169 Identities=15% Similarity=0.040 Sum_probs=101.6
Q ss_pred ccccC-CccEEEecccccccc-c-CccC-----CCcccEEEecceecC---HHHHHHHHhcC-CccceeeeeccCCceEE
Q 040388 7 AFNAE-SIVVLELQFCKLESL-R-NNVT-----LSSLRKLCSSHVYED---DQVIEDFVAGC-PLIEYMHVFDCGGLKCL 74 (226)
Q Consensus 7 ~~~~~-sL~~L~L~~c~~~~~-~-~~~~-----l~sLk~L~L~~~~~~---~~~l~~l~~~c-p~Le~L~l~~c~~l~~l 74 (226)
+..++ +|++|+|++|.+... + .... +++|++|+|++|.++ ...+...+..+ +.|++|++++|.- ...
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~ 124 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSK 124 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGS
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcH
Confidence 34566 899999999987631 1 1112 389999999999984 34555666666 8999999998842 111
Q ss_pred e-------cCC-CCCcceEEeccCCCce-----EEE---Eec-ceeeEEEeCCCC--cccc----ccccCc-ccCcEEEe
Q 040388 75 E-------LPD-LNNLKEFKAYDNFRLQ-----RLH---ING-VNVCSIDLASRR--TLSD----INVAPC-KHLEKLKL 130 (226)
Q Consensus 75 ~-------i~~-~~~Lk~L~l~~c~~l~-----~~~---~~~-~~L~~L~~~~~~--~~~~----~~~~~~-~~L~~L~L 130 (226)
. +.. +.+|++|++++|. +. .+. ... ++|++|++.+.. .... ..+..+ ++|++|++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 0 222 3588888888874 22 110 112 378888855431 1100 012334 48888888
Q ss_pred eccccCchhHH----HHHhcCCCCcEEeccccccceeec--------cCccccceeEEcc
Q 040388 131 SGLYIIDECPS----NQVSKLQFLEYLHIDCCMKLRSAK--------ISSRCLKKLFFKG 178 (226)
Q Consensus 131 ~~~~it~~~~~----~l~~~~~~Le~L~l~~C~~L~~l~--------i~~~~L~~L~l~~ 178 (226)
++|.+++.... .+....++|+.|+++++. +.... -...+|+.|++.+
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEecc
Confidence 88887764332 222224588888888752 22221 1225688888765
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.4e-09 Score=82.56 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=72.7
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEeccC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c 90 (226)
++++++++.+...+.. -.+.+++|+|+++.++.-.....+.++++|+.|+++++. +..+ .+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC
Confidence 4666666665432221 134566777777665322111224566777777776653 3333 2445666777777666
Q ss_pred CCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 91 FRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 91 ~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
. +..+. ...++|++|++.+. .......+..+++|++|++++|.++...+ ..+..+++|+.|++.++
T Consensus 92 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 R-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp C-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSC
T ss_pred c-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCc
Confidence 3 22111 12345555553321 11112234566677777777776655322 23355667777776653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.8e-08 Score=82.15 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=96.8
Q ss_pred CCccccccCCccEEEecccccccc-cC-cc-CCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ec
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-RN-NV-TLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---EL 76 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~~-~~-~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i 76 (226)
+|..+. +.+++|+|++|.+... +. .. .+++|++|+|+++.++.-. ...+.++++|++|+++++. +..+ .+
T Consensus 33 iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 108 (361)
T 2xot_A 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDEFLF 108 (361)
T ss_dssp CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCCHHHh
Confidence 565544 4588999999987633 22 23 7899999999998873211 1235678999999999874 4444 24
Q ss_pred CCCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--Cccccccc---cCcccCcEEEeeccccCchhHHHHHhcC
Q 040388 77 PDLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINV---APCKHLEKLKLSGLYIIDECPSNQVSKL 147 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~---~~~~~L~~L~L~~~~it~~~~~~l~~~~ 147 (226)
.++++|+.|++++|. +..+. ...++|++|++.+. .......+ ..+++|++|++++|.++.... ..+..+
T Consensus 109 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l 186 (361)
T 2xot_A 109 SDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKL 186 (361)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHS
T ss_pred CCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhc
Confidence 568899999999884 43332 13578888885443 11111112 467889999999998876432 334556
Q ss_pred CC--CcEEeccc
Q 040388 148 QF--LEYLHIDC 157 (226)
Q Consensus 148 ~~--Le~L~l~~ 157 (226)
+. ++.|++.+
T Consensus 187 ~~~~l~~l~l~~ 198 (361)
T 2xot_A 187 PAWVKNGLYLHN 198 (361)
T ss_dssp CHHHHTTEECCS
T ss_pred cHhhcceEEecC
Confidence 65 37777765
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.1e-08 Score=82.89 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=83.3
Q ss_pred ccccCCccEEEecccc-cccccCccCCCcccEEEecceecCHHHHHHHH-hcCCccceeeeeccCC-------ce----E
Q 040388 7 AFNAESIVVLELQFCK-LESLRNNVTLSSLRKLCSSHVYEDDQVIEDFV-AGCPLIEYMHVFDCGG-------LK----C 73 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~-~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~-~~cp~Le~L~l~~c~~-------l~----~ 73 (226)
+-.+++|+.|+|++|. ... +. ...++|+.|.|..+.++++.+..+. ..+|+|++|+|+.+.+ ++ .
T Consensus 168 l~~~P~L~~L~L~g~~~l~l-~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSI-GK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBC-CS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred HhcCCCCcEEEEeCCCCcee-cc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3456788888888873 322 12 3478888888888888777777765 3688899988863211 11 1
Q ss_pred EecCCCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHH---hcCCCC
Q 040388 74 LELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQV---SKLQFL 150 (226)
Q Consensus 74 l~i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~---~~~~~L 150 (226)
+....+|+|+.|.+.+|..-... + ........+++|++|++++|.+++.....+. ..+++|
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~---~-------------~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L 309 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVV---V-------------EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHH---H-------------HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTC
T ss_pred HhcCCCCCcCEEeCCCCCCchHH---H-------------HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcc
Confidence 12234677777777766311000 0 0001123467888888888888776544433 457888
Q ss_pred cEEecccc
Q 040388 151 EYLHIDCC 158 (226)
Q Consensus 151 e~L~l~~C 158 (226)
+.|+++.|
T Consensus 310 ~~L~L~~n 317 (362)
T 2ra8_A 310 KFINMKYN 317 (362)
T ss_dssp SEEECCSB
T ss_pred eEEECCCC
Confidence 88888776
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.4e-10 Score=87.28 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=21.2
Q ss_pred ccCcccCcEEEeeccccCchh---------HHHHHhcCCCCcEEe
Q 040388 119 VAPCKHLEKLKLSGLYIIDEC---------PSNQVSKLQFLEYLH 154 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~---------~~~l~~~~~~Le~L~ 154 (226)
+..+++|++|++++|.+++.. ....+..+++|+.|+
T Consensus 136 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 455667777777777654331 123455667777765
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-08 Score=90.25 Aligned_cols=168 Identities=18% Similarity=0.120 Sum_probs=98.0
Q ss_pred CCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe-cCCCCCcceEEecc
Q 040388 11 ESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE-LPDLNNLKEFKAYD 89 (226)
Q Consensus 11 ~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~-i~~~~~Lk~L~l~~ 89 (226)
.+|++|++++|.+...+... +++|++|+|++|.++. +. ..+++|+.|++++|. +..+. +. .+|+.|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~l~--~~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPELP--ASLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCCCC--TTCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcchhh--cCCCEEECCC
Confidence 37888888888876433322 5788888888887741 22 457888888888772 22221 22 3788888887
Q ss_pred CCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeeccCcc
Q 040388 90 NFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKISSR 169 (226)
Q Consensus 90 c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~~~ 169 (226)
|. +..+....++|++|++.+.... .+. ..+++|++|++++|.++.. .. +. ++|+.|+++++ .++.++.-..
T Consensus 130 N~-l~~lp~~l~~L~~L~Ls~N~l~-~lp-~~l~~L~~L~Ls~N~L~~l--p~-l~--~~L~~L~Ls~N-~L~~lp~~~~ 200 (571)
T 3cvr_A 130 NQ-LTMLPELPALLEYINADNNQLT-MLP-ELPTSLEVLSVRNNQLTFL--PE-LP--ESLEALDVSTN-LLESLPAVPV 200 (571)
T ss_dssp SC-CSCCCCCCTTCCEEECCSSCCS-CCC-CCCTTCCEEECCSSCCSCC--CC-CC--TTCCEEECCSS-CCSSCCCCC-
T ss_pred Cc-CCCCCCcCccccEEeCCCCccC-cCC-CcCCCcCEEECCCCCCCCc--ch-hh--CCCCEEECcCC-CCCchhhHHH
Confidence 74 2222115677888875443100 011 1456788888888877652 22 22 77888888775 3333322112
Q ss_pred cc-------ceeEEcc-eE------EEeCCCcceEEEeecc
Q 040388 170 CL-------KKLFFKG-EF------MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 170 ~L-------~~L~l~~-~~------~i~~p~L~sl~~~g~~ 196 (226)
+| +.|++.+ .+ ....|+|+.+...++.
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 45 6677665 11 1235677777777663
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-08 Score=89.05 Aligned_cols=155 Identities=17% Similarity=0.090 Sum_probs=105.6
Q ss_pred CCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCc
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNL 82 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~L 82 (226)
+|..++ ++|++|+|++|.+...+ ..+++|++|+|++|.++. +.. +. .+|+.|++++|. +..+.- .+++|
T Consensus 74 lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~Ls~N~-l~~lp~-~l~~L 142 (571)
T 3cvr_A 74 LPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLDVDNNQ-LTMLPE-LPALL 142 (571)
T ss_dssp CCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSCCCC-CCTTC
T ss_pred cCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEECCCCc-CCCCCC-cCccc
Confidence 676664 78999999999987544 458999999999998743 333 22 289999999873 332322 57899
Q ss_pred ceEEeccCCCceEEEEecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCC-------cEEe
Q 040388 83 KEFKAYDNFRLQRLHINGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFL-------EYLH 154 (226)
Q Consensus 83 k~L~l~~c~~l~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~L-------e~L~ 154 (226)
+.|++++|. +..+....++|++|++.+. ....+. +. ++|++|++++|.++.- + .+ . ++| +.|+
T Consensus 143 ~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~l-p-~~-~--~~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 143 EYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESL-P-AV-P--VRNHHSEETEIFFR 213 (571)
T ss_dssp CEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSC-C-CC-C----------CCEEEE
T ss_pred cEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCch-h-hH-H--HhhhcccccceEEe
Confidence 999999985 3333335689999996543 111111 32 8999999999998742 2 21 2 256 9999
Q ss_pred ccccccceeecc---CccccceeEEcc
Q 040388 155 IDCCMKLRSAKI---SSRCLKKLFFKG 178 (226)
Q Consensus 155 l~~C~~L~~l~i---~~~~L~~L~l~~ 178 (226)
++++ .++.++- ..++|+.|++.+
T Consensus 214 Ls~N-~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 214 CREN-RITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp CCSS-CCCCCCGGGGGSCTTEEEECCS
T ss_pred cCCC-cceecCHHHhcCCCCCEEEeeC
Confidence 9985 4454432 235788888876
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-09 Score=90.59 Aligned_cols=148 Identities=14% Similarity=0.057 Sum_probs=99.6
Q ss_pred cCCccEEEecccccccc-----cCc--cCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCC----ceEE--ec
Q 040388 10 AESIVVLELQFCKLESL-----RNN--VTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG----LKCL--EL 76 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~-----~~~--~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~----l~~l--~i 76 (226)
.++|++|+|++|.+... ... ...++|++|+|++|.+++..+..+...+++|++|++++|.- ...+ .+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 36799999999987521 111 13479999999999998888888888888999999998832 1111 01
Q ss_pred -CCCCCcceEEeccCCCceE-----E---EEecceeeEEEeCCCC-cc-----ccccccCcccCcEEEeeccccCchhHH
Q 040388 77 -PDLNNLKEFKAYDNFRLQR-----L---HINGVNVCSIDLASRR-TL-----SDINVAPCKHLEKLKLSGLYIIDECPS 141 (226)
Q Consensus 77 -~~~~~Lk~L~l~~c~~l~~-----~---~~~~~~L~~L~~~~~~-~~-----~~~~~~~~~~L~~L~L~~~~it~~~~~ 141 (226)
..+++|++|++++|. +.+ + ....++|++|++.+.. .. ....+..+++|++|++++|.+++....
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 235789999999985 221 1 0135778888855431 10 011234566888899988888876543
Q ss_pred H---HHhcCCCCcEEecccc
Q 040388 142 N---QVSKLQFLEYLHIDCC 158 (226)
Q Consensus 142 ~---l~~~~~~Le~L~l~~C 158 (226)
. .+..+++|+.|++++|
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHhCCCCCEEeccCC
Confidence 3 3446688888888876
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.5e-09 Score=79.75 Aligned_cols=90 Identities=11% Similarity=0.146 Sum_probs=51.0
Q ss_pred CcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEeccCCCceEEEEecceeeEEEeC
Q 040388 33 SSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLA 109 (226)
Q Consensus 33 ~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~ 109 (226)
..|+.|++++|.+++.++..+ .+|++|++|++++|..+..-. ++..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~----------------------------- 110 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLE----------------------------- 110 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCH-----------------------------
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcc-----------------------------
Confidence 357777777777777666664 566666666666665432210 11100
Q ss_pred CCCccccccccCcccCcEEEeeccc-cCchhHHHHHhcCCCCcEEecccccccee
Q 040388 110 SRRTLSDINVAPCKHLEKLKLSGLY-IIDECPSNQVSKLQFLEYLHIDCCMKLRS 163 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~~Le~L~l~~C~~L~~ 163 (226)
..+++|++|++++|. ||+..+..+ ..+++|+.|++.+|+.++.
T Consensus 111 ----------~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 111 ----------NLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ----------HHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred ----------cccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence 013456666666653 666665554 3566666666666665554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.61 E-value=7.3e-09 Score=76.44 Aligned_cols=88 Identities=24% Similarity=0.264 Sum_probs=69.3
Q ss_pred CCCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE----ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL----ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l----~i~ 77 (226)
.+|..+..+++|++|++++|.+........+++|++|+++++.+++. +.....++++|+.|++++|. +..+ .+.
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHh
Confidence 46777778999999999999886444455799999999999998543 55667789999999999984 2221 356
Q ss_pred CCCCcceEEeccCC
Q 040388 78 DLNNLKEFKAYDNF 91 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~ 91 (226)
++++|++|++++|.
T Consensus 111 ~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 111 KLENLKSLDLFNCE 124 (149)
T ss_dssp GCTTCCEEECTTCG
T ss_pred hCCCCCEEeCcCCc
Confidence 67889999998873
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-08 Score=75.72 Aligned_cols=158 Identities=14% Similarity=0.054 Sum_probs=104.4
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEeccC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYDN 90 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~c 90 (226)
+.++.+++.+...+.. -.++|++|+++++.++. .....+.++++|++|+++++ .++.+. +.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 4566666665432222 35789999999998742 11233578899999999887 333332 345778888888876
Q ss_pred CCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc---C
Q 040388 91 FRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI---S 167 (226)
Q Consensus 91 ~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i---~ 167 (226)
. +.. .....+..+++|++|++++|.++... ...+..+++|+.|++.++ .++.+.- .
T Consensus 87 ~-l~~------------------~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 145 (208)
T 2o6s_A 87 Q-LQS------------------LPNGVFDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQN-QLKSVPDGVFD 145 (208)
T ss_dssp C-CCC------------------CCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred c-CCc------------------cCHhHhcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCC-ccceeCHHHhc
Confidence 3 221 01123567889999999999987542 344578899999999986 3443332 2
Q ss_pred -ccccceeEEcc-eEEEeCCCcceEEEeec
Q 040388 168 -SRCLKKLFFKG-EFMLDTSNLSTFEYQGN 195 (226)
Q Consensus 168 -~~~L~~L~l~~-~~~i~~p~L~sl~~~g~ 195 (226)
..+|+.|++.+ .+.-++|+|+.+...++
T Consensus 146 ~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 175 (208)
T ss_dssp TCTTCCEEECCSCCBCCCTTTTHHHHHHHH
T ss_pred cCCCccEEEecCCCeecCCCCHHHHHHHHH
Confidence 35788898887 45566788877654443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-08 Score=88.45 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=52.7
Q ss_pred CCCCcceEEeccCCCceEE----EEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 78 DLNNLKEFKAYDNFRLQRL----HINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~----~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
++++|+.+++++|.....+ ....++|++|++.+. ....+..+.++++|++|++++|.++.... ..+..+++|+
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~ 545 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQ 545 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC-GGGTTCTTCC
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh-hHHhCCCCCC
Confidence 3466677777666422211 123466777774432 11122345667777777777777655321 2345667777
Q ss_pred EEeccccccceeecc---C--ccccceeEEcc
Q 040388 152 YLHIDCCMKLRSAKI---S--SRCLKKLFFKG 178 (226)
Q Consensus 152 ~L~l~~C~~L~~l~i---~--~~~L~~L~l~~ 178 (226)
.|+++++ .++.+.. . ..+|+.|++.+
T Consensus 546 ~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 546 VLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp EEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred EEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 7777764 2332221 1 13566777665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=9.4e-08 Score=85.88 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=18.3
Q ss_pred ccCcccCcEEEeeccccCch--hHHHHHhcCCCCcEEe
Q 040388 119 VAPCKHLEKLKLSGLYIIDE--CPSNQVSKLQFLEYLH 154 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~--~~~~l~~~~~~Le~L~ 154 (226)
+..+++|+.|++++|.++.. ....+...+|+|+.|+
T Consensus 529 l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 44556666666666655432 1123334455665553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-07 Score=76.68 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=50.7
Q ss_pred cccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc----Cccccc-eeEEcce---E----EEeCCCcce
Q 040388 122 CKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI----SSRCLK-KLFFKGE---F----MLDTSNLST 189 (226)
Q Consensus 122 ~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i----~~~~L~-~L~l~~~---~----~i~~p~L~s 189 (226)
|++|+++++.++.++.- ....+.+|++|+.+++.+. ++.+.- .+.+|+ .+.+... + -.++++|++
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCE
Confidence 77888888887766543 2344577788888887652 555532 224566 6766542 1 134677777
Q ss_pred EEEeecceeecc-----ccccceeee
Q 040388 190 FEYQGNLVSFSS-----NALALSQII 210 (226)
Q Consensus 190 l~~~g~~~~~~~-----~~~~l~~~~ 210 (226)
+...++.+.... +++.|+.+.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 777555432222 556666554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=9e-08 Score=75.48 Aligned_cols=130 Identities=18% Similarity=0.092 Sum_probs=90.7
Q ss_pred CCccccccCCccEEEecccccccc-c--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ec
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-R--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---EL 76 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i 76 (226)
+|..+. +.+++|++++|.+... + ....+++|++|+|+++.++.-. ...+.++++|++|+++++.- ..+ .+
T Consensus 26 iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~ 101 (220)
T 2v70_A 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRL-ENVQHKMF 101 (220)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CCCCGGGG
T ss_pred CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCcc-CccCHhHh
Confidence 565443 4578999999988643 2 2357999999999999873211 12367889999999998743 222 25
Q ss_pred CCCCCcceEEeccCCCceEE----EEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCc
Q 040388 77 PDLNNLKEFKAYDNFRLQRL----HINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~----~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
.++++|++|++++|. +..+ ....++|++|++.+. .......+..+++|++|++++|.++.
T Consensus 102 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 102 KGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred cCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 678999999999885 2222 124688999996543 22223456788999999999998754
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-07 Score=79.84 Aligned_cols=145 Identities=17% Similarity=0.099 Sum_probs=99.2
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHh-cCCccceeeeeccCCceEEe---cCCCCCcceEEecc
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVA-GCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYD 89 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~-~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~ 89 (226)
++++++++.+...+.. -.+.++.|+|+++.++.-. ...+. ++++|+.|+++++ .+..+. +.++++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 5788888877644332 2467999999999874321 11233 8899999999987 444443 56789999999999
Q ss_pred CCCceEEEE----ecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHH---hcCCCCcEEecccccc
Q 040388 90 NFRLQRLHI----NGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQV---SKLQFLEYLHIDCCMK 160 (226)
Q Consensus 90 c~~l~~~~~----~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~---~~~~~Le~L~l~~C~~ 160 (226)
|. +..+.- ..++|++|++.+. .......+..+++|++|++++|.++... ...+ ..+++|+.|+++++ .
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N-~ 174 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSN-K 174 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSS-C
T ss_pred Cc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCC-C
Confidence 84 544422 3588999996543 2112335678899999999999987632 2223 56899999999984 3
Q ss_pred ceee
Q 040388 161 LRSA 164 (226)
Q Consensus 161 L~~l 164 (226)
++.+
T Consensus 175 l~~l 178 (361)
T 2xot_A 175 LKKL 178 (361)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 4443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-07 Score=73.72 Aligned_cols=141 Identities=15% Similarity=0.110 Sum_probs=94.2
Q ss_pred ccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEecc
Q 040388 13 IVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYD 89 (226)
Q Consensus 13 L~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~ 89 (226)
-+.++.+++.+...+.. -.++|++|+|+++.++.- ....+.++++|++|+++++. +..+. +.++++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 45677777776543332 248899999999887331 12235678889999998874 33332 35678888888887
Q ss_pred CCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc---
Q 040388 90 NFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI--- 166 (226)
Q Consensus 90 c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i--- 166 (226)
|. +..+ ....+..+++|++|++++|.++.- + ..+..+++|+.|+++++ .++.+..
T Consensus 98 N~-l~~l------------------~~~~~~~l~~L~~L~Ls~N~l~~l-p-~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 155 (229)
T 3e6j_A 98 NQ-LTVL------------------PSAVFDRLVHLKELFMCCNKLTEL-P-RGIERLTHLTHLALDQN-QLKSIPHGAF 155 (229)
T ss_dssp SC-CCCC------------------CTTTTTTCTTCCEEECCSSCCCSC-C-TTGGGCTTCSEEECCSS-CCCCCCTTTT
T ss_pred Cc-CCcc------------------ChhHhCcchhhCeEeccCCccccc-C-cccccCCCCCEEECCCC-cCCccCHHHH
Confidence 73 2211 112356788999999999998742 2 33478899999999985 4554432
Q ss_pred C-ccccceeEEcc
Q 040388 167 S-SRCLKKLFFKG 178 (226)
Q Consensus 167 ~-~~~L~~L~l~~ 178 (226)
. .++|+.|++.+
T Consensus 156 ~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 156 DRLSSLTHAYLFG 168 (229)
T ss_dssp TTCTTCCEEECTT
T ss_pred hCCCCCCEEEeeC
Confidence 2 25788888876
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.3e-07 Score=75.17 Aligned_cols=157 Identities=12% Similarity=0.094 Sum_probs=88.3
Q ss_pred cCCccEEEecccccccc--cCccCCCcccEEEecceec---CHHHHHHHHhcCCccceeeee-----------------c
Q 040388 10 AESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYE---DDQVIEDFVAGCPLIEYMHVF-----------------D 67 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~-----------------~ 67 (226)
|++|+.|.|.. .+... ..+.++++|+.|.+.++.+ .+.+ ..+|..+..+... +
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a----F~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEA----LADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTS----SCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhh----hcCCCceEEecCcchhhhhcccccccccccc
Confidence 78999999988 55422 2345788999999987753 2222 2345555544322 2
Q ss_pred cCCce--------------------------EEecC-------------CCCCcceEEeccCCCceEEE----Eecceee
Q 040388 68 CGGLK--------------------------CLELP-------------DLNNLKEFKAYDNFRLQRLH----INGVNVC 104 (226)
Q Consensus 68 c~~l~--------------------------~l~i~-------------~~~~Lk~L~l~~c~~l~~~~----~~~~~L~ 104 (226)
|..++ .+.+. .|++|+.+++.++. ++.+. -++++|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLL 253 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCC
Confidence 22222 11111 16788888887652 43332 2356777
Q ss_pred EEEeCCC-CccccccccCcccCc-EEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc----CccccceeE
Q 040388 105 SIDLASR-RTLSDINVAPCKHLE-KLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI----SSRCLKKLF 175 (226)
Q Consensus 105 ~L~~~~~-~~~~~~~~~~~~~L~-~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i----~~~~L~~L~ 175 (226)
++.+.+. .......+.+|.+|+ .+.+.. .++.-. ...+.+|++|+.+++.+ ..++.+.- .+.+|+.+.
T Consensus 254 ~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~-~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIE-FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEEC-TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred EEECCcccceehHHHhhCChhccEEEEEcc-cceEEc-hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 7775432 112233467888888 888877 443321 23457888888888765 44555542 124555543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-07 Score=72.23 Aligned_cols=75 Identities=8% Similarity=0.081 Sum_probs=37.8
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEeccC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c 90 (226)
++++++++.+...+... .++|+.|+++++.++.-.....+.+.++|++|+++++. +..+ .+.++++|+.|+++++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC
Confidence 55666666554322211 33666666666655221111124556666666666652 2222 2344566666666665
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.41 E-value=5.2e-07 Score=69.50 Aligned_cols=114 Identities=18% Similarity=0.116 Sum_probs=80.8
Q ss_pred CCCccccccCCccEEEeccccccccc-C--ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---e
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR-N--NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---E 75 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~-~--~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~ 75 (226)
.+|..++. +|++|++++|.+...+ . ...+++|++|+|+++.++.- ....+.+.+.|++|+++++. +..+ .
T Consensus 22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 97 (192)
T 1w8a_A 22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEISNKM 97 (192)
T ss_dssp SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEECSSS
T ss_pred cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc-CCccCHHH
Confidence 35665554 8999999999886432 2 45799999999999987432 12236778999999999974 4333 2
Q ss_pred cCCCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCch
Q 040388 76 LPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDE 138 (226)
Q Consensus 76 i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~ 138 (226)
+.++++|++|+++++. +..+ ....+..+++|++|++++|.++.+
T Consensus 98 ~~~l~~L~~L~L~~N~-l~~~------------------~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQ-ISCV------------------MPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp STTCTTCCEEECCSSC-CCEE------------------CTTSSTTCTTCCEEECTTCCBCCS
T ss_pred hcCCCCCCEEECCCCc-CCee------------------CHHHhhcCCCCCEEEeCCCCccCc
Confidence 5567889999988873 3321 112356678899999999887643
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.8e-07 Score=70.44 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=73.1
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEeccC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c 90 (226)
++++++++.+...+.. -.++|+.|+|+++.++. +...+.++++|+.|+++++. +..+ .+.++++|++|+++++
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC
Confidence 5778888777643332 24788999998887741 22346778888888888763 3222 2456778888888776
Q ss_pred CCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 91 FRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 91 ~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
. +..+ ....+..+++|++|++++|.++.. ....+..+++|+.|++.+
T Consensus 89 ~-l~~i------------------~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 89 R-LRCI------------------PPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp C-CCBC------------------CTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCS
T ss_pred c-cCEe------------------CHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCC
Confidence 3 2211 011244556677777776666542 122344566666666665
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.35 E-value=4e-07 Score=71.73 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=92.0
Q ss_pred CCCccccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---c
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---L 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i 76 (226)
.+|..+. ++|++|++++|.+... + ....+++|++|+|+++.++.-. ...+.++++|++|+++++. +..+. +
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f 100 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNK-ITELPKSLF 100 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCc-CCccCHhHc
Confidence 3566554 6899999999988643 2 3457899999999999873211 2236788999999999873 33332 4
Q ss_pred CCCCCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCc
Q 040388 77 PDLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
.++++|+.|++++|. +..+. ...++|++|++.+. .......+..+++|++|++++|.++-
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 568999999999985 33221 14588999996543 22222346778999999999988643
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-07 Score=68.90 Aligned_cols=109 Identities=19% Similarity=0.132 Sum_probs=75.4
Q ss_pred ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEeccCCCceEEEEecceeeEEE
Q 040388 29 NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKAYDNFRLQRLHINGVNVCSID 107 (226)
Q Consensus 29 ~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~ 107 (226)
...+++|+.|+++++.++. +..+...+|.|+.|++++|. +..+ .+.++++|+.|++++|. +..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~---------- 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIG---------- 80 (176)
T ss_dssp EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEEC----------
T ss_pred cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccC----------
Confidence 3467899999999998742 23444555689999998873 3333 45667888888888773 33210
Q ss_pred eCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 108 LASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
...+..+++|++|++++|.+++......+..+++|+.|++++++
T Consensus 81 --------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 81 --------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp --------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred --------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 11235778999999999998653211245788999999999864
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.2e-07 Score=67.88 Aligned_cols=75 Identities=12% Similarity=0.023 Sum_probs=40.4
Q ss_pred ccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEecc
Q 040388 13 IVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYD 89 (226)
Q Consensus 13 L~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~ 89 (226)
.+.++++++.+...+. .-.++|+.|+++++.++. .....+.++++|++|+++++ .+..+. +.++++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 4566666666543222 124677777777766531 11122455667777777665 222221 24456666666666
Q ss_pred C
Q 040388 90 N 90 (226)
Q Consensus 90 c 90 (226)
|
T Consensus 86 N 86 (177)
T 2o6r_A 86 N 86 (177)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.6e-07 Score=79.82 Aligned_cols=165 Identities=14% Similarity=0.103 Sum_probs=104.4
Q ss_pred CccEEEecccccc-c---------ccCccCCCcccEEEecceecC--------HHHHHHHHhcCCccceeeeeccCCceE
Q 040388 12 SIVVLELQFCKLE-S---------LRNNVTLSSLRKLCSSHVYED--------DQVIEDFVAGCPLIEYMHVFDCGGLKC 73 (226)
Q Consensus 12 sL~~L~L~~c~~~-~---------~~~~~~l~sLk~L~L~~~~~~--------~~~l~~l~~~cp~Le~L~l~~c~~l~~ 73 (226)
+++.|.+..+... . ......+++|+.|.+..+... ...+..++..+|+|++|.+++|.++..
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 5677887765532 0 011225899999999765321 124678899999999999998854432
Q ss_pred EecCCCCCcceEEeccCCC----ceEEE-EecceeeEEEe-CC------CCcc---c-cccccCcccCcEEEeeccccCc
Q 040388 74 LELPDLNNLKEFKAYDNFR----LQRLH-INGVNVCSIDL-AS------RRTL---S-DINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 74 l~i~~~~~Lk~L~l~~c~~----l~~~~-~~~~~L~~L~~-~~------~~~~---~-~~~~~~~~~L~~L~L~~~~it~ 137 (226)
-.+. +++|++|.+..|.- +..+. ...|+|++|++ .+ .... . ......+++|++|.+..|.+++
T Consensus 188 ~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 188 GKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp CSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred cccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence 2233 58999999987741 11121 15799999984 21 1000 0 1122468999999999999877
Q ss_pred hhHHHHH--hcCCCCcEEecccccccee-----ecc---CccccceeEEcc
Q 040388 138 ECPSNQV--SKLQFLEYLHIDCCMKLRS-----AKI---SSRCLKKLFFKG 178 (226)
Q Consensus 138 ~~~~~l~--~~~~~Le~L~l~~C~~L~~-----l~i---~~~~L~~L~l~~ 178 (226)
.....+. +.+|+|+.|+++.+ .+.. +.- ..++|+.|++..
T Consensus 267 ~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 267 VVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp HHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCC
Confidence 5544443 36789999999764 3433 211 125688888764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-07 Score=85.06 Aligned_cols=104 Identities=15% Similarity=0.046 Sum_probs=56.9
Q ss_pred CCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCCCcceEEeccCCCceEEE---EecceeeE
Q 040388 31 TLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLNNLKEFKAYDNFRLQRLH---INGVNVCS 105 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~~Lk~L~l~~c~~l~~~~---~~~~~L~~ 105 (226)
.+++|+.|+|+++.+. .+..-+.++++|++|+|++|. +..+ .+.++++|+.|++++|. +..+. ..+++|++
T Consensus 222 ~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSE
T ss_pred cCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCE
Confidence 4566666666666552 111113356666666666652 2222 23445666666666663 22211 13456666
Q ss_pred EEeCCC-CccccccccCcccCcEEEeeccccCch
Q 040388 106 IDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDE 138 (226)
Q Consensus 106 L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~ 138 (226)
|++.+. ....+..+..+++|++|+|++|.++..
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 664332 112223467888999999999988764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=66.29 Aligned_cols=113 Identities=23% Similarity=0.174 Sum_probs=77.7
Q ss_pred CCccccccCCccEEEecccccccc-cC-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESL-RN-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LP 77 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~-~~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~ 77 (226)
+|..++ ++|++|++++|.+... +. ...+++|++|+++++.++. .....+.++++|+.|+++++. +..+. +.
T Consensus 22 ~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~ 97 (177)
T 2o6r_A 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENK-LQSLPNGVFD 97 (177)
T ss_dssp CCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCCCC-ccccCHHHhh
Confidence 454444 6899999999987643 22 3568999999999998742 112235688999999999873 33321 34
Q ss_pred CCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCch
Q 040388 78 DLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDE 138 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~ 138 (226)
++++|+.|++++|. +..+ ....+..+++|++|++++|.++..
T Consensus 98 ~l~~L~~L~l~~N~-l~~~------------------~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 98 KLTQLKELALDTNQ-LKSV------------------PDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCTTCCEEECCSSC-CSCC------------------CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcccCEEECcCCc-ceEe------------------CHHHhcCCcccCEEEecCCCeecc
Confidence 56788888888763 2211 112245678999999999988754
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.27 E-value=7.9e-07 Score=74.77 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=98.3
Q ss_pred CCcccc-ccCCccEEEecccccc-cc-c-CccCCCcccEE-EecceecCHHHHHHHHhcCCccceeeeeccCC-------
Q 040388 3 LPQVAF-NAESIVVLELQFCKLE-SL-R-NNVTLSSLRKL-CSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGG------- 70 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~-~~-~-~~~~l~sLk~L-~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~------- 70 (226)
+|...| .+++|++|+|++|.+. .. . ...++++|+.+ .++.+.+.. .....+.++++|+.|+++++.-
T Consensus 45 i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~~ 123 (350)
T 4ay9_X 45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVH 123 (350)
T ss_dssp ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhccccccccccccccccCCchh
Confidence 566544 6899999999999863 22 2 22456776654 444444311 0012356778888888887631
Q ss_pred ------ceEEecC--------------CC-CCcceEEeccCCCceEEEE---ecceeeEEEeCCC--Cc-cccccccCcc
Q 040388 71 ------LKCLELP--------------DL-NNLKEFKAYDNFRLQRLHI---NGVNVCSIDLASR--RT-LSDINVAPCK 123 (226)
Q Consensus 71 ------l~~l~i~--------------~~-~~Lk~L~l~~c~~l~~~~~---~~~~L~~L~~~~~--~~-~~~~~~~~~~ 123 (226)
+..+.+. ++ ..++.|+++++ .++.+.- ..++|+++.+.+. .. ...-.+..++
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 1122111 11 23555666655 3333321 2356677764321 11 1122357788
Q ss_pred cCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeeccC--ccccceeEEcc
Q 040388 124 HLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKIS--SRCLKKLFFKG 178 (226)
Q Consensus 124 ~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i~--~~~L~~L~l~~ 178 (226)
+|++|++++|.++.-. . ..+.+|+.|.+.++..++.+.-- -.+|+.+++..
T Consensus 203 ~L~~LdLs~N~l~~lp--~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 203 GPVILDISRTRIHSLP--S--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCSEEECTTSCCCCCC--S--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ccchhhcCCCCcCccC--h--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 9999999998887531 1 35778888888888777776521 25677777653
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=67.88 Aligned_cols=112 Identities=12% Similarity=0.082 Sum_probs=78.9
Q ss_pred CCCccccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELP 77 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~ 77 (226)
.+|..++ ++|++|++++|.+... .....+++|++|+|+++.++.- ....+.++++|++|+++++. +..+ .+.
T Consensus 24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~ 99 (193)
T 2wfh_A 24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPRTFD 99 (193)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTT
T ss_pred cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHHHhC
Confidence 3566554 6899999999998743 3445789999999999988421 11236788999999999874 3333 255
Q ss_pred CCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccC
Q 040388 78 DLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYII 136 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it 136 (226)
++++|+.|+++++. +..+ ....+..+++|++|++++|.+.
T Consensus 100 ~l~~L~~L~L~~N~-l~~~------------------~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 100 GLKSLRLLSLHGND-ISVV------------------PEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCSSC-CCBC------------------CTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCC-CCee------------------ChhhhhcCccccEEEeCCCCee
Confidence 67888988888873 2211 1123556789999999988764
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-07 Score=80.91 Aligned_cols=134 Identities=13% Similarity=-0.000 Sum_probs=92.1
Q ss_pred cCCccEEEecccccccc---cCccCCCcccEEEecceecCHHHHHHHH----hcCCccceeeeeccCC----ceEE--ec
Q 040388 10 AESIVVLELQFCKLESL---RNNVTLSSLRKLCSSHVYEDDQVIEDFV----AGCPLIEYMHVFDCGG----LKCL--EL 76 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~---~~~~~l~sLk~L~L~~~~~~~~~l~~l~----~~cp~Le~L~l~~c~~----l~~l--~i 76 (226)
+++|++|+|++|.+... .....+++|+.|+|++|.+++.....+. ..++.|++|++++|.- ...+ .+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 36999999999987521 1223467999999999999877666653 3578999999999842 1111 12
Q ss_pred CCCCCcceEEeccCCCceEE--------EEecceeeEEEeCCCC-cc-----ccccccCcccCcEEEeeccccCchhHHH
Q 040388 77 PDLNNLKEFKAYDNFRLQRL--------HINGVNVCSIDLASRR-TL-----SDINVAPCKHLEKLKLSGLYIIDECPSN 142 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~--------~~~~~~L~~L~~~~~~-~~-----~~~~~~~~~~L~~L~L~~~~it~~~~~~ 142 (226)
..+++|++|++++|. +.+. ....++|++|++.+.. .. ....+..+++|++|++++|.+++.....
T Consensus 180 ~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred hcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 346899999999985 2211 1134689999965431 11 0112345689999999999999877655
Q ss_pred HH
Q 040388 143 QV 144 (226)
Q Consensus 143 l~ 144 (226)
+.
T Consensus 259 L~ 260 (372)
T 3un9_A 259 LR 260 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.11 E-value=5.5e-08 Score=75.26 Aligned_cols=104 Identities=18% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe--cCCCCCcceEEeccCCCceEEEEecceeeEEEe
Q 040388 31 TLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE--LPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDL 108 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~--i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~ 108 (226)
.+++|++|+|+++.+++ +. -+.++++|+.|++++|. +..+. +..+++|+.|++++|. +.
T Consensus 46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~-------------- 106 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IA-------------- 106 (198)
T ss_dssp HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CC--------------
T ss_pred cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CC--------------
Confidence 46677777777776633 22 34455667777766652 11110 0112344444444431 11
Q ss_pred CCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccc
Q 040388 109 ASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCM 159 (226)
Q Consensus 109 ~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~ 159 (226)
. .+ .+..+++|++|++++|.+++......+..+++|+.|++.+++
T Consensus 107 ----~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 107 ----S-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ----C-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ----c-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 0 11 345678899999999988764322345788899999998863
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-05 Score=69.25 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=74.7
Q ss_pred CCccceeeeeccCCceEEe---cCCCCCcceEEeccCCCceEEEE---ecceeeEEEeCCC-CccccccccCcccCcEEE
Q 040388 57 CPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYDNFRLQRLHI---NGVNVCSIDLASR-RTLSDINVAPCKHLEKLK 129 (226)
Q Consensus 57 cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~c~~l~~~~~---~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~ 129 (226)
|..|+++.+.. +++.+. ..+|++|+.+++... ++.+.- ...+|+.+.+.+. .......+.+|++|+.+.
T Consensus 202 ~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEE
Confidence 34455554432 233331 335777777777653 222221 1145666664332 111233567889999999
Q ss_pred eeccccCc----hhHHHHHhcCCCCcEEeccccccceeecc---C-ccccceeEEcce---E----EEeCCCcceEEEee
Q 040388 130 LSGLYIID----ECPSNQVSKLQFLEYLHIDCCMKLRSAKI---S-SRCLKKLFFKGE---F----MLDTSNLSTFEYQG 194 (226)
Q Consensus 130 L~~~~it~----~~~~~l~~~~~~Le~L~l~~C~~L~~l~i---~-~~~L~~L~l~~~---~----~i~~p~L~sl~~~g 194 (226)
+.++.+.. ......+.+|++|+.+++.. .++.+.- . +.+|+.+.+... + --++ +|+++.+.+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcC
Confidence 98765431 11234467888999988863 3444432 2 256777776541 1 1346 888888877
Q ss_pred cceee
Q 040388 195 NLVSF 199 (226)
Q Consensus 195 ~~~~~ 199 (226)
...+.
T Consensus 355 n~~~~ 359 (401)
T 4fdw_A 355 TTPPQ 359 (401)
T ss_dssp SSCCB
T ss_pred CCCcc
Confidence 65333
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.91 E-value=6.2e-06 Score=62.15 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=30.4
Q ss_pred ccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEecc
Q 040388 13 IVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYD 89 (226)
Q Consensus 13 L~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~ 89 (226)
.++++++++.+...+... .++|++|+|+++.++.-. ...+.++++|++|+++++. +..+. +.++++|+.|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence 344555554443222211 245555555555442100 1113344555555555442 22221 23344555555554
Q ss_pred C
Q 040388 90 N 90 (226)
Q Consensus 90 c 90 (226)
+
T Consensus 88 N 88 (170)
T 3g39_A 88 N 88 (170)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.86 E-value=8e-06 Score=61.87 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=30.5
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEeccC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYDN 90 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~c 90 (226)
+.++++++.+...+... .++|++|+|+++.++.- ....+.++++|+.|+++++ .+..+. +.++++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 34455554443222211 24555555555544210 0112334455555555544 222221 133455555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-06 Score=76.11 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=79.1
Q ss_pred CccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEeccC
Q 040388 12 SIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 12 sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l~~c 90 (226)
.|++|+|++|.+...+....+++|+.|+|++|.++ .+..-+.++++|+.|++++|. +..+ .++++++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCC
Confidence 58899999998865455567899999999999875 333457788999999999873 2222 4677899999999988
Q ss_pred CCceEE-----EEecceeeEEEeCCC--Cccccc---cccCcccCcEEEe
Q 040388 91 FRLQRL-----HINGVNVCSIDLASR--RTLSDI---NVAPCKHLEKLKL 130 (226)
Q Consensus 91 ~~l~~~-----~~~~~~L~~L~~~~~--~~~~~~---~~~~~~~L~~L~L 130 (226)
. +..+ ....++|+.|++.+. ....+. ....+++|+.|++
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5 2222 124688999996553 111111 1234788888864
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.2e-06 Score=77.29 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=62.5
Q ss_pred CccccccCCccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ecCCCC
Q 040388 4 PQVAFNAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--ELPDLN 80 (226)
Q Consensus 4 P~~~~~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i~~~~ 80 (226)
|..+..++.|++|+|++|.+... .....+++|++|+|++|.++ .+..-+.++++|+.|+|++|. +..+ .+++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 44555677888888888876533 23346788888888888774 223335677888888888774 2222 244567
Q ss_pred CcceEEeccCCCceEEE---EecceeeEEEeCC
Q 040388 81 NLKEFKAYDNFRLQRLH---INGVNVCSIDLAS 110 (226)
Q Consensus 81 ~Lk~L~l~~c~~l~~~~---~~~~~L~~L~~~~ 110 (226)
+|+.|++++|. +..+. ...++|++|++.+
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCC
Confidence 78888887773 22221 1356777777543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=61.61 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=27.0
Q ss_pred ccCcccCcEEEe--eccccCchhH---HHHHhcCCCCcEEecccc
Q 040388 119 VAPCKHLEKLKL--SGLYIIDECP---SNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 119 ~~~~~~L~~L~L--~~~~it~~~~---~~l~~~~~~Le~L~l~~C 158 (226)
+...++|++|++ ++|.+++... ...+...+.|+.|++++|
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 345567888888 7777877653 344455677888888765
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.74 E-value=5.6e-05 Score=56.81 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=17.4
Q ss_pred CccceeeeeccCCceEE---ecCCCCCcceEEeccC
Q 040388 58 PLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 58 p~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c 90 (226)
+.|+.|+++++. ++.+ .+.++++|++|+++++
T Consensus 30 ~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN 64 (170)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC
Confidence 556666666652 2222 2345566666666665
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.71 E-value=9.7e-05 Score=55.79 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=39.3
Q ss_pred CccceeeeeccCCceEE---ecCCCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccc
Q 040388 58 PLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLY 134 (226)
Q Consensus 58 p~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 134 (226)
+.|+.|+++++. +..+ .+.++++|+.|+++++. +..+. ...+..+++|++|++++|.
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~------------------~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIP------------------TGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC------------------TTTTTTCTTCCEEECCSSC
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccC------------------hhHhCCcchhhEEECCCCc
Confidence 567777777653 2222 24456667777776662 22110 0112344555666665555
Q ss_pred cCchhHHHHHhcCCCCcEEeccc
Q 040388 135 IIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 135 it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
++... ...+..+++|+.|++.+
T Consensus 93 l~~l~-~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 93 LKSIP-RGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCC-TTTTTTCTTCSEEECCS
T ss_pred cceeC-HHHhccccCCCEEEeCC
Confidence 54432 12234455555555554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00016 Score=62.04 Aligned_cols=157 Identities=8% Similarity=0.126 Sum_probs=90.9
Q ss_pred ccCCccEEEecccccccc-cCccCCCcccEEEeccee--cCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCc
Q 040388 9 NAESIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVY--EDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNL 82 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~L 82 (226)
.|++|+.+++.++.+... .....+.+|+.+.+...- +.+. ...+|++|+.+++.+ +++.+. ..+ .+|
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGI 250 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCT--TCCEECTTTTTT-CCC
T ss_pred CcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhh----HhhCCCCCCEEecCC--CccCcccccccc-CCc
Confidence 466777777766655422 223335667776665421 1222 367899999999876 344442 233 567
Q ss_pred ceEEeccCCCceEEE----EecceeeEEEeCCC-C------ccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 83 KEFKAYDNFRLQRLH----INGVNVCSIDLASR-R------TLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 83 k~L~l~~c~~l~~~~----~~~~~L~~L~~~~~-~------~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
+.+.+... ++.+. -++++|+.+.+.+. . ......+.+|++|+.+.+.. .++.-. ...+.+|.+|+
T Consensus 251 ~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~-~~aF~~c~~L~ 326 (401)
T 4fdw_A 251 TTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG-QGLLGGNRKVT 326 (401)
T ss_dssp SEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC-TTTTTTCCSCC
T ss_pred cEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh-hhhhcCCCCcc
Confidence 77777542 33332 24677777774332 1 12233567889999998874 343321 23457888999
Q ss_pred EEeccccccceeec---cCccccceeEEcc
Q 040388 152 YLHIDCCMKLRSAK---ISSRCLKKLFFKG 178 (226)
Q Consensus 152 ~L~l~~C~~L~~l~---i~~~~L~~L~l~~ 178 (226)
.+++.. .++.+. +..-+|+.+.+.+
T Consensus 327 ~l~lp~--~l~~I~~~aF~~~~L~~l~l~~ 354 (401)
T 4fdw_A 327 QLTIPA--NVTQINFSAFNNTGIKEVKVEG 354 (401)
T ss_dssp EEEECT--TCCEECTTSSSSSCCCEEEECC
T ss_pred EEEECc--cccEEcHHhCCCCCCCEEEEcC
Confidence 998853 345443 2222677777765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00018 Score=54.84 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=69.8
Q ss_pred ccccCCccEEEeccc-cccc-----c-cCccCCCcccEEEecceecCHHHHHH---HHhcCCccceeeeeccCC----ce
Q 040388 7 AFNAESIVVLELQFC-KLES-----L-RNNVTLSSLRKLCSSHVYEDDQVIED---FVAGCPLIEYMHVFDCGG----LK 72 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c-~~~~-----~-~~~~~l~sLk~L~L~~~~~~~~~l~~---l~~~cp~Le~L~l~~c~~----l~ 72 (226)
+..+++|++|+|++| .+.. . ......++|++|+|++|.+++++... .+..++.|++|++++|.- ..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345789999999999 7752 1 11234689999999999997766444 466788999999999842 11
Q ss_pred EE--ecCCCCCcceEEe--ccCC----C---ceEEEEecceeeEEEeCC
Q 040388 73 CL--ELPDLNNLKEFKA--YDNF----R---LQRLHINGVNVCSIDLAS 110 (226)
Q Consensus 73 ~l--~i~~~~~Lk~L~l--~~c~----~---l~~~~~~~~~L~~L~~~~ 110 (226)
.+ .+...++|++|++ ++|. + +.......++|++|++.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 11 1334578999999 6564 1 111111347888888544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.36 E-value=9.5e-05 Score=61.62 Aligned_cols=86 Identities=21% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCCccccccCCccEEEecc-cccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---
Q 040388 2 NLPQVAFNAESIVVLELQF-CKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE--- 75 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~-c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~--- 75 (226)
.+|. +..+++|++|+|++ |.+... ....++++|+.|+|+++.++.- ....+.++++|++|+|+++. +..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~ 99 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNA-LESLSWKT 99 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSC-CSCCCSTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCc-cceeCHHH
Confidence 4788 77889999999996 777632 2345799999999999987331 12246788999999999873 33331
Q ss_pred cCCCCCcceEEeccCC
Q 040388 76 LPDLNNLKEFKAYDNF 91 (226)
Q Consensus 76 i~~~~~Lk~L~l~~c~ 91 (226)
+.. .+|+.|++.++.
T Consensus 100 ~~~-~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQG-LSLQELVLSGNP 114 (347)
T ss_dssp TCS-CCCCEEECCSSC
T ss_pred ccc-CCceEEEeeCCC
Confidence 222 338888888764
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00051 Score=57.15 Aligned_cols=101 Identities=20% Similarity=0.103 Sum_probs=60.9
Q ss_pred EEEeccc-ccccccCccCCCcccEEEecc-eecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcceEEecc
Q 040388 15 VLELQFC-KLESLRNNVTLSSLRKLCSSH-VYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYD 89 (226)
Q Consensus 15 ~L~L~~c-~~~~~~~~~~l~sLk~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~ 89 (226)
.+++++. .+...+....+++|+.|+|++ +.++.- ....+.++++|+.|+|+++ .+..+. +.++++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 565433344577888899985 765211 1122567788888888876 454442 34567777777777
Q ss_pred CCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCc
Q 040388 90 NFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 90 c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
+. +..+ ....+... .|+.|++.+|.++-
T Consensus 90 N~-l~~~------------------~~~~~~~~-~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NA-LESL------------------SWKTVQGL-SLQELVLSGNPLHC 117 (347)
T ss_dssp SC-CSCC------------------CSTTTCSC-CCCEEECCSSCCCC
T ss_pred Cc-ccee------------------CHHHcccC-CceEEEeeCCCccC
Confidence 63 2210 01112233 39999999988764
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00086 Score=54.31 Aligned_cols=104 Identities=17% Similarity=0.070 Sum_probs=62.9
Q ss_pred CcccE--EEecceec--CHHHHHHHHhcCCccceeeeeccCCceEE-ec----CCCCCcceEEeccCCCceEEEEeccee
Q 040388 33 SSLRK--LCSSHVYE--DDQVIEDFVAGCPLIEYMHVFDCGGLKCL-EL----PDLNNLKEFKAYDNFRLQRLHINGVNV 103 (226)
Q Consensus 33 ~sLk~--L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i----~~~~~Lk~L~l~~c~~l~~~~~~~~~L 103 (226)
|.|+. +++..+.. -...++.+..++|.|+.|+|+++. +..+ .+ ..+++|+.|+++++. +..+
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~------- 211 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE------- 211 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-------
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-------
Confidence 34444 44444432 233344455789999999999873 3222 12 247888888888773 2210
Q ss_pred eEEEeCCCCccccccccCcccCcEEEeeccccCch------hHHHHHhcCCCCcEEecc
Q 040388 104 CSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDE------CPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 104 ~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~------~~~~l~~~~~~Le~L~l~ 156 (226)
+. ...+..+ +|++|++++|.++.. ....+...||+|+.|+-.
T Consensus 212 ~~----------l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 212 RE----------LDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GG----------GGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hh----------hhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 00 0112233 899999999988652 224567889999998643
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0049 Score=52.24 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=18.2
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~ 156 (226)
+..|.+|+.+.+... ++.- -...+.+|.+|+.+++.
T Consensus 293 F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLP 328 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCC
T ss_pred ccccccccccccccc-ccee-chhhhcCCCCCCEEEeC
Confidence 445666666666433 2111 01224566667766663
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0036 Score=50.67 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=52.2
Q ss_pred ccCCccEEEeccccccccc---C-ccCCCcccEEEecceecC-HHHHHHHHhcCCccceeeeeccCCceEE---------
Q 040388 9 NAESIVVLELQFCKLESLR---N-NVTLSSLRKLCSSHVYED-DQVIEDFVAGCPLIEYMHVFDCGGLKCL--------- 74 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~---~-~~~l~sLk~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~l~~l--------- 74 (226)
.+++|++|+|++|.+.... . ...+++|+.|+|++|.++ -+.+..+ .+. .|++|++++++--..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4689999999999986422 1 136999999999999984 3344332 333 8999999987532111
Q ss_pred ecCCCCCcceEEe
Q 040388 75 ELPDLNNLKEFKA 87 (226)
Q Consensus 75 ~i~~~~~Lk~L~l 87 (226)
-+..+|+|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 1334688887763
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.02 Score=48.41 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=19.6
Q ss_pred cccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecc
Q 040388 118 NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~ 156 (226)
.+.+|.+|+.+.+..+ ++.-. ...+.+|++|+.+++.
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIG-ANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEEC-TTTBTTCTTCCEEEEE
T ss_pred hccCCCCCCEEEECcc-ccEeh-HHHhhCCCCCCEEEEC
Confidence 3556677777766543 22211 1234566666666654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.073 Score=44.88 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=33.7
Q ss_pred cCCCcccEEEecceec--CHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEecc
Q 040388 30 VTLSSLRKLCSSHVYE--DDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYD 89 (226)
Q Consensus 30 ~~l~sLk~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~ 89 (226)
.++.+|+.+.+..... ... ...+|+.|+++.+.. .++.+ ...+|.+|+.+++..
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred eecccccEEecccccceecCc----ccccccccccccCCC--cccccCceeecCCCCcCEEEeCC
Confidence 4577888888754321 222 256788888888753 34444 245677888777754
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.47 Score=39.46 Aligned_cols=12 Identities=17% Similarity=0.044 Sum_probs=5.7
Q ss_pred hcCCccceeeee
Q 040388 55 AGCPLIEYMHVF 66 (226)
Q Consensus 55 ~~cp~Le~L~l~ 66 (226)
.+|+.++...+.
T Consensus 155 ~~~~~l~~~~~~ 166 (379)
T 4h09_A 155 YKAENLEKIEVS 166 (379)
T ss_dssp TTCTTCCEEEEC
T ss_pred cccccccccccc
Confidence 445555554443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.12 Score=43.47 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=34.4
Q ss_pred CCCCcceEEeccCCCceEEE----EecceeeEEEeCCC-CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcE
Q 040388 78 DLNNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR-RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEY 152 (226)
Q Consensus 78 ~~~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~ 152 (226)
+|.+|+.+.+.... ..+. .++++|+.+.+... .......+.+|.+|+.+.+..+ ++.-. ...+.+|.+|+.
T Consensus 263 ~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~C~~L~~ 338 (394)
T 4gt6_A 263 SCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQIL-DDAFAGCEQLER 338 (394)
T ss_dssp TCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCE
T ss_pred ecccccEEeccccc--ceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEeh-HhHhhCCCCCCE
Confidence 45666666654321 1111 12345555554322 1111224566777777777543 22110 122456666776
Q ss_pred Eecc
Q 040388 153 LHID 156 (226)
Q Consensus 153 L~l~ 156 (226)
+++.
T Consensus 339 i~ip 342 (394)
T 4gt6_A 339 IAIP 342 (394)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6664
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=90.58 E-value=1.2 Score=36.96 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=22.2
Q ss_pred cccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecc
Q 040388 118 NVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 118 ~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~ 156 (226)
.+.+|.+|+.+.+..+.++.-. ...+.+|.+|+.+++.
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~-~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLE-PRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEEC-TTTTTTCTTCCEEECC
T ss_pred ccccccccccccccccccceeh-hhhhcCCCCCCEEEcC
Confidence 3566777777777665443211 1234566777777664
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=88.29 E-value=0.52 Score=36.08 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=54.5
Q ss_pred ccCCccEEEeccc-cccc-----cc-CccCCCcccEEEecceecCHHH---HHHHHhcCCccceeeeeccCC----c---
Q 040388 9 NAESIVVLELQFC-KLES-----LR-NNVTLSSLRKLCSSHVYEDDQV---IEDFVAGCPLIEYMHVFDCGG----L--- 71 (226)
Q Consensus 9 ~~~sL~~L~L~~c-~~~~-----~~-~~~~l~sLk~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~c~~----l--- 71 (226)
+.++|++|+|+++ .+.. .. ....-..|+.|+|++|.+++.+ +...+..-..|++|+|+++.- .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4678999999986 5541 10 1123578999999999997665 455566678899999998742 1
Q ss_pred -eEEecCCCCCcceEEeccC
Q 040388 72 -KCLELPDLNNLKEFKAYDN 90 (226)
Q Consensus 72 -~~l~i~~~~~Lk~L~l~~c 90 (226)
+.+... ..|+.|+++++
T Consensus 119 a~aL~~N--~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVT--QSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTT--CCCSEEECCCC
T ss_pred HHHHhhC--CceeEEECCCC
Confidence 112222 57999999865
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=82.82 E-value=1.1 Score=34.14 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=64.8
Q ss_pred CCCcccEEEecce-ecCHHHHHHH---HhcCCccceeeeeccCC-------c-eEEecCCCCCcceEEeccCCCceEEEE
Q 040388 31 TLSSLRKLCSSHV-YEDDQVIEDF---VAGCPLIEYMHVFDCGG-------L-KCLELPDLNNLKEFKAYDNFRLQRLHI 98 (226)
Q Consensus 31 ~l~sLk~L~L~~~-~~~~~~l~~l---~~~cp~Le~L~l~~c~~-------l-~~l~i~~~~~Lk~L~l~~c~~l~~~~~ 98 (226)
.-+.|+.|+|+++ .+.+++.+.+ +..-..|+.|+|++|.- + +.|.. + .+|++|+++.|. +.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N-~tL~~L~L~~N~-Ig~~-- 113 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-S-PSLRVLNVESNF-LTPE-- 113 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-C-SSCCEEECCSSB-CCHH--
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-C-CccCeEecCCCc-CCHH--
Confidence 4578999999986 7877665554 44456799999998842 1 11111 2 789999999884 2110
Q ss_pred ecceeeEEEeCCCCccccccccCcccCcEEEeecc---ccCchh---HHHHHhcCCCCcEEeccc
Q 040388 99 NGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGL---YIIDEC---PSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 99 ~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~---~it~~~---~~~l~~~~~~Le~L~l~~ 157 (226)
|.... .-.+..-..|++|+++++ .+.+.. +.+....-+.|..|++..
T Consensus 114 -----------Ga~al-a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 114 -----------LLARL-LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp -----------HHHHH-HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred -----------HHHHH-HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 00000 001223345888888754 455543 233445556788777764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=82.39 E-value=0.93 Score=31.94 Aligned_cols=34 Identities=21% Similarity=-0.023 Sum_probs=20.5
Q ss_pred CccEEEeccccccccc--CccCCCcccEEEecceec
Q 040388 12 SIVVLELQFCKLESLR--NNVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 12 sL~~L~L~~c~~~~~~--~~~~l~sLk~L~L~~~~~ 45 (226)
+|++|+|++|.+...+ ....+++|++|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5677777777665331 123466677777777665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 226 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.52 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.52 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.27 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.21 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.2 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.18 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.13 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.09 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.02 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.99 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.99 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.98 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.94 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.93 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.84 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.79 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.73 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.65 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.56 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.56 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.54 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.48 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.42 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.41 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.39 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.23 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.21 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.19 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.0 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 97.99 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 97.93 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 97.88 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 97.75 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.45 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 97.44 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.29 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.09 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.88 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.74 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.58 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.4 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.82 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1e-15 Score=124.31 Aligned_cols=169 Identities=19% Similarity=0.286 Sum_probs=121.4
Q ss_pred cccCCccEEEeccccccc--c-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe----cCCCC
Q 040388 8 FNAESIVVLELQFCKLES--L-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE----LPDLN 80 (226)
Q Consensus 8 ~~~~sL~~L~L~~c~~~~--~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~----i~~~~ 80 (226)
+...+|++|++++|.+.. . .....+++|++|+|+++.+++..+..+ ..||+|++|++++|.++..-. ..+|+
T Consensus 43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~ 121 (284)
T d2astb2 43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121 (284)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHH
Confidence 455689999999998652 1 234578999999999998888877775 578999999999998764321 24589
Q ss_pred CcceEEeccCCCceE------EEEecceeeEEEeCCCCcc-----ccccccCcccCcEEEeeccc-cCchhHHHHHhcCC
Q 040388 81 NLKEFKAYDNFRLQR------LHINGVNVCSIDLASRRTL-----SDINVAPCKHLEKLKLSGLY-IIDECPSNQVSKLQ 148 (226)
Q Consensus 81 ~Lk~L~l~~c~~l~~------~~~~~~~L~~L~~~~~~~~-----~~~~~~~~~~L~~L~L~~~~-it~~~~~~l~~~~~ 148 (226)
+|++|++++|..+.+ +...+++|+.+++.|.... .......|++|++|++++|. +++..+..+ ..++
T Consensus 122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l-~~~~ 200 (284)
T d2astb2 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLN 200 (284)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCT
T ss_pred hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh-cccC
Confidence 999999999875432 1123578999997664111 11124578999999999874 787776554 5789
Q ss_pred CCcEEeccccccceeec---c-CccccceeEEcc
Q 040388 149 FLEYLHIDCCMKLRSAK---I-SSRCLKKLFFKG 178 (226)
Q Consensus 149 ~Le~L~l~~C~~L~~l~---i-~~~~L~~L~l~~ 178 (226)
+|++|++.+|..+..-. + ..++|+.|++.+
T Consensus 201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~ 234 (284)
T d2astb2 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234 (284)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence 99999999997764322 1 236788888765
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.3e-15 Score=122.17 Aligned_cols=184 Identities=11% Similarity=0.103 Sum_probs=134.9
Q ss_pred CccEEEecccccccc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce--EEecCCCCCcceEEec
Q 040388 12 SIVVLELQFCKLESL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK--CLELPDLNNLKEFKAY 88 (226)
Q Consensus 12 sL~~L~L~~c~~~~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~--~l~i~~~~~Lk~L~l~ 88 (226)
.+..+++++...... .......+|++|+|+++.++++.+..++..||+|++|++++|.--. .-.+..+++|++|+++
T Consensus 24 ~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls 103 (284)
T d2astb2 24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103 (284)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence 455677766554421 2334567999999999999999999999999999999999994211 0134568999999999
Q ss_pred cCCCceE-----EEEecceeeEEEeCCCCcc-----ccccccCcccCcEEEeecc--ccCchhHHHHHhcCCCCcEEecc
Q 040388 89 DNFRLQR-----LHINGVNVCSIDLASRRTL-----SDINVAPCKHLEKLKLSGL--YIIDECPSNQVSKLQFLEYLHID 156 (226)
Q Consensus 89 ~c~~l~~-----~~~~~~~L~~L~~~~~~~~-----~~~~~~~~~~L~~L~L~~~--~it~~~~~~l~~~~~~Le~L~l~ 156 (226)
+|..+.+ +...+|+|++|++.+.... .......+++|+.|+++++ .+++..+..+..+||+|++|+++
T Consensus 104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~ 183 (284)
T d2astb2 104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183 (284)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence 9976543 2235799999997654111 1112245789999999976 47888888888999999999999
Q ss_pred ccccceeecc----CccccceeEEcc--e-------EEEeCCCcceEEEeec
Q 040388 157 CCMKLRSAKI----SSRCLKKLFFKG--E-------FMLDTSNLSTFEYQGN 195 (226)
Q Consensus 157 ~C~~L~~l~i----~~~~L~~L~l~~--~-------~~i~~p~L~sl~~~g~ 195 (226)
+|..++.-.+ ..++|++|++.+ . ..-.+|+|++++..|.
T Consensus 184 ~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 9987654322 236899999975 1 1235799999988764
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.27 E-value=4.6e-12 Score=96.99 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=106.4
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEEec
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFKAY 88 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l~ 88 (226)
.++++++|++++|.+....+...+++|++|+++++.+++- .. +.++|+|++|++++|.....-.+.++++|+.++++
T Consensus 38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~ 114 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 114 (199)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCc--cc-ccCCccccccccccccccccccccccccccccccc
Confidence 4678999999999887544555799999999999988432 12 67899999999998854322236778999999999
Q ss_pred cCCCceEE-EEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec
Q 040388 89 DNFRLQRL-HINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK 165 (226)
Q Consensus 89 ~c~~l~~~-~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~ 165 (226)
+|...... ....++|+.++..+........+..+++|++|++.+|.+++- .. +.++++|+.|+++++ .++.+.
T Consensus 115 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l--~~-l~~l~~L~~L~ls~N-~i~~i~ 188 (199)
T d2omxa2 115 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL--KP-LANLTTLERLDISSN-KVSDIS 188 (199)
T ss_dssp SSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred ccccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCC--cc-ccCCCCCCEEECCCC-CCCCCc
Confidence 88622110 113678888885543111111356788999999999988763 22 478899999999987 455553
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.21 E-value=3.1e-11 Score=93.96 Aligned_cols=143 Identities=14% Similarity=0.052 Sum_probs=82.5
Q ss_pred ccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEe
Q 040388 9 NAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKA 87 (226)
Q Consensus 9 ~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l 87 (226)
.+++|+.|++.+|.+....+...+++|++|+++++.+++-. . +.++++++.+++.+|.. +.+ .+.++++|+.+.+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~l~l 114 (227)
T d1h6ua2 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDL 114 (227)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEEC
T ss_pred HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-ccccccccccccccccc-ccccccccccccccccc
Confidence 36789999999998765455567999999999999874321 1 68889999999987732 223 2566788888888
Q ss_pred ccCCCceEE-EEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 88 YDNFRLQRL-HINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 88 ~~c~~l~~~-~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
+++...... ....+.++.+...+........+..+++|++|.+.++.+++.. . +.++++|+.|++++|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~Ls~n 183 (227)
T d1h6ua2 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDN 183 (227)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS
T ss_pred ccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch--h-hcccccceecccCCC
Confidence 877511100 0112334444422211111112334455555555555544321 1 244555555555554
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.20 E-value=2.3e-11 Score=93.81 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=112.0
Q ss_pred cCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEec
Q 040388 10 AESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKAY 88 (226)
Q Consensus 10 ~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l~ 88 (226)
+++|++|++++|.+....+...+++|++|+|+++.+++ +.. ++++++|+.|++++|. ++.+ .+.++++|+.++++
T Consensus 45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLE 120 (210)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECT
T ss_pred hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--ccc-cccCcccccccccccc-ccccccccccccccccccc
Confidence 56899999999988654455579999999999998843 222 4678999999999873 4433 36678999999999
Q ss_pred cCCC--ceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec-
Q 040388 89 DNFR--LQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK- 165 (226)
Q Consensus 89 ~c~~--l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~- 165 (226)
+|.. +.. ....++++.++..+...........+++|++++++++.+++- .. +.++++|+.|+++++ .++.+.
T Consensus 121 ~~~~~~~~~-l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i--~~-l~~l~~L~~L~Ls~N-~i~~l~~ 195 (210)
T d1h6ta2 121 HNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKN-HISDLRA 195 (210)
T ss_dssp TSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSS-CCCBCGG
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccccccccccc--cc-ccCCCCCCEEECCCC-CCCCChh
Confidence 8852 221 113567777774432111112355778999999999988763 23 578899999999986 456554
Q ss_pred cCc-cccceeEEcc
Q 040388 166 ISS-RCLKKLFFKG 178 (226)
Q Consensus 166 i~~-~~L~~L~l~~ 178 (226)
+.. ++|+.|++.+
T Consensus 196 l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 196 LAGLKNLDVLELFS 209 (210)
T ss_dssp GTTCTTCSEEEEEE
T ss_pred hcCCCCCCEEEccC
Confidence 332 5678877754
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.18 E-value=1.8e-11 Score=95.34 Aligned_cols=165 Identities=16% Similarity=0.101 Sum_probs=114.9
Q ss_pred cccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceE
Q 040388 6 VAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEF 85 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L 85 (226)
.+..+++|++|++++|.+........+++|+++.++++.+++ +.. +++++.|+.+++++|.....-.+...+.++.+
T Consensus 58 ~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l 134 (227)
T d1h6ua2 58 GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134 (227)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-ccccccccccccccccccccchhccccchhhh
Confidence 356789999999999987644345678999999999987732 222 56889999999988864433234556788888
Q ss_pred EeccCCCceEE-EEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceee
Q 040388 86 KAYDNFRLQRL-HINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSA 164 (226)
Q Consensus 86 ~l~~c~~l~~~-~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l 164 (226)
.+.++...... ....++|+++++.+........++.+++|++|++++|.+++- .. +.++++|++|++++| .++.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l--~~-l~~l~~L~~L~Ls~N-~lt~i 210 (227)
T d1h6ua2 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI--SP-LASLPNLIEVHLKNN-QISDV 210 (227)
T ss_dssp ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECTTS-CCCBC
T ss_pred hchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCC--hh-hcCCCCCCEEECcCC-cCCCC
Confidence 88777521111 124678888885543111122467889999999999988763 22 578899999999997 56666
Q ss_pred c-cC-ccccceeEEc
Q 040388 165 K-IS-SRCLKKLFFK 177 (226)
Q Consensus 165 ~-i~-~~~L~~L~l~ 177 (226)
. +. .++|+.|++.
T Consensus 211 ~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 211 SPLANTSNLFIVTLT 225 (227)
T ss_dssp GGGTTCTTCCEEEEE
T ss_pred cccccCCCCCEEEee
Confidence 4 32 3567777765
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.13 E-value=5.1e-11 Score=91.00 Aligned_cols=140 Identities=18% Similarity=0.176 Sum_probs=102.5
Q ss_pred ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEE
Q 040388 7 AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFK 86 (226)
Q Consensus 7 ~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~ 86 (226)
+-.+++|++|++++|.+...+....+++|+.|+++++.+.. +.. +++++.|+.|++++|.....-.+.++++|+.++
T Consensus 58 l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~--~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 134 (199)
T d2omxa2 58 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134 (199)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred cccCCCcCcCccccccccCcccccCCccccccccccccccc--ccc-cccccccccccccccccccccccchhhhhHHhh
Confidence 45689999999999988644445679999999999998732 112 678999999999988654433466789999999
Q ss_pred eccCCCceEEE--EecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 87 AYDNFRLQRLH--INGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 87 l~~c~~l~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
+++|. +..+. ...++|++++..+........+.++++|++|++++|.+++- .. +..+++|+.|
T Consensus 135 l~~n~-l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i--~~-l~~L~~L~~L 199 (199)
T d2omxa2 135 LSSNT-ISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SV-LAKLTNLESL 199 (199)
T ss_dssp CCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GGGCTTCSEE
T ss_pred hhhhh-hcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCCCC--cc-ccCCCCCCcC
Confidence 99884 33221 14678999985543111111367889999999999999873 22 4678888876
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.09 E-value=6.5e-11 Score=91.20 Aligned_cols=145 Identities=17% Similarity=0.101 Sum_probs=104.8
Q ss_pred cccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceE
Q 040388 6 VAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEF 85 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L 85 (226)
.+-.+++|++|++++|.+...+....+++|++|+++++.+++ +.. +.++|+|+.|++.+|.....-.+.++++++.+
T Consensus 63 ~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l 139 (210)
T d1h6ta2 63 GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139 (210)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-cccccccccccccccccccccccccccccccc
Confidence 355789999999999987644444579999999999998843 222 67789999999998854321135567889999
Q ss_pred EeccCCCceEE--EEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 86 KAYDNFRLQRL--HINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 86 ~l~~c~~l~~~--~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
.++.+. +.+. .-..++|+++++.+........+..+++|++|++++|.+++- .. +.++++|+.|++++
T Consensus 140 ~~~~n~-l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 140 YLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFS 209 (210)
T ss_dssp ECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEE
T ss_pred cccccc-ccccccccccccccccccccccccccccccCCCCCCEEECCCCCCCCC--hh-hcCCCCCCEEEccC
Confidence 998774 2221 113578999986553111112467889999999999999863 23 57889999999864
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.7e-10 Score=91.88 Aligned_cols=170 Identities=17% Similarity=0.100 Sum_probs=95.7
Q ss_pred CCCccccccCCccEEEecccccccc--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCce-EEecCC
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLK-CLELPD 78 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~-~l~i~~ 78 (226)
.+|+.+. +++++|+|++|.+... ....++++|++|+|+++.++. +.. .+..|+|+.|+++++.--. .-.+.+
T Consensus 24 ~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 98 (266)
T d1p9ag_ 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLGQT 98 (266)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCTTT
T ss_pred eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-cccccccccccccccccccccccccc
Confidence 3565543 4677888887776532 223467778888887776632 111 2456777888777763211 112345
Q ss_pred CCCcceEEeccCCCc--e-EEEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 79 LNNLKEFKAYDNFRL--Q-RLHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 79 ~~~Lk~L~l~~c~~l--~-~~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
+++|+.++++++... . ......++++++...+. .......+..+++++.+++++|.++... ...+..+++|+.|
T Consensus 99 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-~~~~~~l~~L~~L 177 (266)
T d1p9ag_ 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTL 177 (266)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEE
T ss_pred ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC-cccccccccccee
Confidence 677777777766411 1 00112355666664332 1111223455677888888887776532 2334667788888
Q ss_pred eccccccceeecc---CccccceeEEcc
Q 040388 154 HIDCCMKLRSAKI---SSRCLKKLFFKG 178 (226)
Q Consensus 154 ~l~~C~~L~~l~i---~~~~L~~L~l~~ 178 (226)
+++++ .++.++- ...+|+.|.+.+
T Consensus 178 ~Ls~N-~L~~lp~~~~~~~~L~~L~L~~ 204 (266)
T d1p9ag_ 178 LLQEN-SLYTIPKGFFGSHLLPFAFLHG 204 (266)
T ss_dssp ECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred ecccC-CCcccChhHCCCCCCCEEEecC
Confidence 88774 3555532 234567777665
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.99 E-value=6.5e-10 Score=91.91 Aligned_cols=166 Identities=16% Similarity=0.080 Sum_probs=97.8
Q ss_pred ccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcce
Q 040388 5 QVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKE 84 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~ 84 (226)
.....+++++.+.+++|.+.........++|++|+++++.+++- . -+.++++|++|++.+|.-.....++++++|++
T Consensus 191 ~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~ 267 (384)
T d2omza2 191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAPLSGLTKLTE 267 (384)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred cccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccCCCCcccccccCCE
Confidence 34456778888888888765333334578888888888877331 1 25678888888888874222224566788888
Q ss_pred EEeccCCCceEEE--EecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccce
Q 040388 85 FKAYDNFRLQRLH--INGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLR 162 (226)
Q Consensus 85 L~l~~c~~l~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~ 162 (226)
++++++. +..+. ...+.++.+...+........+..++++++|+++++.+++.. . +..+++|++|++++| .++
T Consensus 268 L~l~~~~-l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~-l~~l~~L~~L~L~~n-~l~ 342 (384)
T d2omza2 268 LKLGANQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--P-VSSLTKLQRLFFANN-KVS 342 (384)
T ss_dssp EECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--G-GGGCTTCCEEECCSS-CCC
T ss_pred eeccCcc-cCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--c-cccCCCCCEEECCCC-CCC
Confidence 8887764 11110 123445555532221001123456677777777777776532 2 466777777777776 344
Q ss_pred eec-cC-ccccceeEEcc
Q 040388 163 SAK-IS-SRCLKKLFFKG 178 (226)
Q Consensus 163 ~l~-i~-~~~L~~L~l~~ 178 (226)
.+. +. .++|++|++++
T Consensus 343 ~l~~l~~l~~L~~L~l~~ 360 (384)
T d2omza2 343 DVSSLANLTNINWLSAGH 360 (384)
T ss_dssp CCGGGGGCTTCCEEECCS
T ss_pred CChhHcCCCCCCEEECCC
Confidence 432 22 24566666554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.99 E-value=5.3e-10 Score=92.47 Aligned_cols=163 Identities=14% Similarity=0.116 Sum_probs=113.4
Q ss_pred cccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEecCCCCCcceEEe
Q 040388 8 FNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLELPDLNNLKEFKA 87 (226)
Q Consensus 8 ~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~i~~~~~Lk~L~l 87 (226)
..+++|++|++++|.+...+....+++|+.|+++++.+++-. . +.++|+|+.|+++++.--..-.+.+++.++.+.+
T Consensus 216 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~ 292 (384)
T d2omza2 216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--P-LSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292 (384)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred cccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC--c-ccccccCCEeeccCcccCCCCccccccccccccc
Confidence 456899999999998865444567899999999999874321 2 6789999999998764222113556788888888
Q ss_pred ccCCCceEE--EEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec
Q 040388 88 YDNFRLQRL--HINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK 165 (226)
Q Consensus 88 ~~c~~l~~~--~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~ 165 (226)
..+. +..+ ....++++++++.+........+..+++|++|++++|.+++- .. +..+++|++|+++++ .++.+.
T Consensus 293 ~~n~-l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l--~~-l~~l~~L~~L~l~~N-~l~~l~ 367 (384)
T d2omza2 293 NENQ-LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV--SS-LANLTNINWLSAGHN-QISDLT 367 (384)
T ss_dssp CSSC-CSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECCSS-CCCBCG
T ss_pred cccc-cccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCC--hh-HcCCCCCCEEECCCC-cCCCCh
Confidence 8774 2221 124578888885443111112367889999999999998863 33 478999999999986 455443
Q ss_pred -cC-ccccceeEEcc
Q 040388 166 -IS-SRCLKKLFFKG 178 (226)
Q Consensus 166 -i~-~~~L~~L~l~~ 178 (226)
+. .++|+.|++++
T Consensus 368 ~l~~l~~L~~L~L~~ 382 (384)
T d2omza2 368 PLANLTRITQLGLND 382 (384)
T ss_dssp GGTTCTTCSEEECCC
T ss_pred hhccCCCCCEeeCCC
Confidence 33 25788877754
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.98 E-value=1.1e-09 Score=88.30 Aligned_cols=189 Identities=15% Similarity=0.151 Sum_probs=111.4
Q ss_pred CCCccccccCCccEEEeccccccccc--CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC----------
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESLR--NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG---------- 69 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~~--~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~---------- 69 (226)
++|..++ +++++|+|++|.+...+ ...++++|++|+++++.+..- ....+.+++.|+.|+++++.
T Consensus 24 ~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~ 100 (305)
T d1xkua_ 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQLKELPEKMPK 100 (305)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCSBCCSSCCT
T ss_pred ccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCccCcCccchhh
Confidence 4677665 57999999999876442 345789999999999887321 12236678999999998762
Q ss_pred CceEEecC---------------------------------------CCCCcceEEeccCCCceEEEE-ecceeeEEEeC
Q 040388 70 GLKCLELP---------------------------------------DLNNLKEFKAYDNFRLQRLHI-NGVNVCSIDLA 109 (226)
Q Consensus 70 ~l~~l~i~---------------------------------------~~~~Lk~L~l~~c~~l~~~~~-~~~~L~~L~~~ 109 (226)
.+..+... ++++|+.+++.+|. +..+.. ..++|+++++.
T Consensus 101 ~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l~ 179 (305)
T d1xkua_ 101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLD 179 (305)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECT
T ss_pred hhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCcccCCccCEEECC
Confidence 11222111 12344555554442 111111 13556666643
Q ss_pred CC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeec--cC-ccccceeEEcc-eE---
Q 040388 110 SR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK--IS-SRCLKKLFFKG-EF--- 180 (226)
Q Consensus 110 ~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~--i~-~~~L~~L~l~~-~~--- 180 (226)
+. .......+..++.+++|+++++.+++... ..+.++++|++|+++++ .++.+. +. .++|++|++++ ++
T Consensus 180 ~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~-~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~i~~i 257 (305)
T d1xkua_ 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAI 257 (305)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCcCCCCChhHhhcccccccccccccccccccc-ccccccccceeeecccc-cccccccccccccCCCEEECCCCccCcc
Confidence 32 11112245667778888888887765432 34467788888888886 455542 22 25777777775 21
Q ss_pred ----------EEeCCCcceEEEeecc
Q 040388 181 ----------MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 181 ----------~i~~p~L~sl~~~g~~ 196 (226)
....++|+.+...|+.
T Consensus 258 ~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 258 GSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ChhhccCcchhcccCCCCEEECCCCc
Confidence 1224677777777663
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.2e-10 Score=91.22 Aligned_cols=151 Identities=18% Similarity=0.127 Sum_probs=105.8
Q ss_pred CCcc-ccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCc--eEEecCCC
Q 040388 3 LPQV-AFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGL--KCLELPDL 79 (226)
Q Consensus 3 lP~~-~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l--~~l~i~~~ 79 (226)
+|.. +..+++|++|+|++|.+...+....+++|++|+|+++.++. ....+.+.+.|+.|+++++... ..-....+
T Consensus 46 l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 123 (266)
T d1p9ag_ 46 FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123 (266)
T ss_dssp EEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC
T ss_pred cCHHHhhccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccceeeccccccc
Confidence 4544 44689999999999998754445679999999999998732 1224677899999999987532 22223456
Q ss_pred CCcceEEeccCCCceEEE----EecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEE
Q 040388 80 NNLKEFKAYDNFRLQRLH----INGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYL 153 (226)
Q Consensus 80 ~~Lk~L~l~~c~~l~~~~----~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L 153 (226)
.+++.+.++++. +..+. ...++|+++++.+. .....-.+..+++|++|++++|.++. .+.. +...++|+.|
T Consensus 124 ~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~~-~~~~~~L~~L 200 (266)
T d1p9ag_ 124 GELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG-FFGSHLLPFA 200 (266)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTT-TTTTCCCSEE
T ss_pred cccccccccccc-cceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc-cChh-HCCCCCCCEE
Confidence 889999998874 32221 23578888885543 22222246778999999999999874 2333 3467899999
Q ss_pred ecccc
Q 040388 154 HIDCC 158 (226)
Q Consensus 154 ~l~~C 158 (226)
++.+.
T Consensus 201 ~L~~N 205 (266)
T d1p9ag_ 201 FLHGN 205 (266)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99863
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=7.8e-10 Score=88.60 Aligned_cols=191 Identities=15% Similarity=0.069 Sum_probs=116.5
Q ss_pred CCCccccccCCccEEEecccccccc-c-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ec
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL-R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---EL 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~-~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i 76 (226)
++|..+. +++++|+|++|++... + ...++++|+.|+++++.+..-. .....+++.++++.+.....+..+ .+
T Consensus 25 ~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 101 (284)
T d1ozna_ 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (284)
T ss_dssp SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-cccccccccccccccccccccccccchhh
Confidence 3566554 5689999999988643 2 2457889999999988763211 123566778888877766555544 35
Q ss_pred CCCCCcceEEeccCCC--ceE-EEEecceeeEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCc
Q 040388 77 PDLNNLKEFKAYDNFR--LQR-LHINGVNVCSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLE 151 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~--l~~-~~~~~~~L~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le 151 (226)
.++++|+.++++.+.. +.. .....++|+.+++.+. .......+..+++|++|++.++.++... ...+.++++|+
T Consensus 102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~-~~~f~~l~~L~ 180 (284)
T d1ozna_ 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLD 180 (284)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCC
T ss_pred cccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc-hhhhccccccc
Confidence 5678888888888751 111 1113466777774432 1111223556778888888888776432 23456778888
Q ss_pred EEeccccccceeec---cC-ccccceeEEcc-e-------EEEeCCCcceEEEeecce
Q 040388 152 YLHIDCCMKLRSAK---IS-SRCLKKLFFKG-E-------FMLDTSNLSTFEYQGNLV 197 (226)
Q Consensus 152 ~L~l~~C~~L~~l~---i~-~~~L~~L~l~~-~-------~~i~~p~L~sl~~~g~~~ 197 (226)
.+.+.++.. ..+. +. .++|+.|++.+ . ..-+.++|+.+...|+.+
T Consensus 181 ~l~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l 237 (284)
T d1ozna_ 181 RLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (284)
T ss_dssp EEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred hhhhhhccc-cccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence 888877533 2222 11 14677777765 1 112457777777777643
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=1.6e-09 Score=76.52 Aligned_cols=119 Identities=22% Similarity=0.215 Sum_probs=82.9
Q ss_pred cEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE-ecCCCCCcceEEeccCCC
Q 040388 14 VVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-ELPDLNNLKEFKAYDNFR 92 (226)
Q Consensus 14 ~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i~~~~~Lk~L~l~~c~~ 92 (226)
++|+|+++.+...+....+++|++|+++++.++. +..-++++++|+.|+++++ .++.+ .+..+++|++++++++.
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N-~i~~l~~~~~l~~L~~L~l~~N~- 76 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNR- 76 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccc-cccccCccccccccCeEECCCCc-
Confidence 5789999988755555678999999999998742 2223678899999999886 33333 35667788888887763
Q ss_pred ceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCch--hHHHHHhcCCCCcEE
Q 040388 93 LQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDE--CPSNQVSKLQFLEYL 153 (226)
Q Consensus 93 l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~--~~~~l~~~~~~Le~L 153 (226)
+.+ .+....+..+++|+++++++|.+++. ....+...+|+|+.|
T Consensus 77 i~~-----------------~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 77 LQQ-----------------SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCS-----------------SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCC-----------------CCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 111 00112356788999999999988643 234566778888876
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.1e-09 Score=79.31 Aligned_cols=127 Identities=17% Similarity=0.057 Sum_probs=70.0
Q ss_pred cccCCccEEEecccccccccC-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---cCCCCCcc
Q 040388 8 FNAESIVVLELQFCKLESLRN-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---LPDLNNLK 83 (226)
Q Consensus 8 ~~~~sL~~L~L~~c~~~~~~~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk 83 (226)
.+..++++|+|++|.+...+. ...+++|+.|+|+++.++. +.. ++++|+|++|++++|. +..+. ..++++|+
T Consensus 15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 90 (162)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhccccc-ccCCCccccccccccc
Confidence 345567777777776653322 2346667777777665521 111 3455666666666553 33221 12245555
Q ss_pred eEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchh--HHHHHhcCCCCcEEecc
Q 040388 84 EFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDEC--PSNQVSKLQFLEYLHID 156 (226)
Q Consensus 84 ~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~--~~~l~~~~~~Le~L~l~ 156 (226)
+|++++|. +.. ......+..+++|+++++++|.+++.. -...+..+|+|+.|+-.
T Consensus 91 ~L~L~~N~-i~~-----------------~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 91 ELILTNNS-LVE-----------------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp EEECCSCC-CCC-----------------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred cceecccc-ccc-----------------cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence 55555542 110 000123567788999999998876532 13456778898888644
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.73 E-value=5.4e-11 Score=91.06 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=20.2
Q ss_pred ccccccCCccEEEecccccccccCccCCCcccEEEecceec
Q 040388 5 QVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYE 45 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~ 45 (226)
.++..+++|++|+|++|.+...+....+++|++|+|++|.+
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i 82 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI 82 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEE
T ss_pred hHHhcccccceeECcccCCCCcccccCCccccChhhccccc
Confidence 34444555555555555544322223455555555555554
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.65 E-value=1.3e-08 Score=82.33 Aligned_cols=174 Identities=16% Similarity=0.105 Sum_probs=102.0
Q ss_pred CCCccccccCCccEEEeccc-ccc-cc-cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE--ec
Q 040388 2 NLPQVAFNAESIVVLELQFC-KLE-SL-RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL--EL 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c-~~~-~~-~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l--~i 76 (226)
.+|+.++++++|++|+|++| .+. .. ....++++|++|+|+++.+... ........+.|+.++++++.....+ .+
T Consensus 67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~~p~~l 145 (313)
T d1ogqa_ 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred CCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhcccccccccccccCchhh
Confidence 47999999999999999985 454 22 3455799999999999987321 1223567888999998876432222 24
Q ss_pred CCCCCcceEEeccCCCceE--------------EEEecc-------------eeeEEEeCCC--CccccccccCcccCcE
Q 040388 77 PDLNNLKEFKAYDNFRLQR--------------LHINGV-------------NVCSIDLASR--RTLSDINVAPCKHLEK 127 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~--------------~~~~~~-------------~L~~L~~~~~--~~~~~~~~~~~~~L~~ 127 (226)
.++++|+.++++++..-.. +..... ....++.... ..........+++++.
T Consensus 146 ~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~ 225 (313)
T d1ogqa_ 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred ccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5567777777776641111 100000 1111111110 0111223446677888
Q ss_pred EEeeccccCchhHHHHHhcCCCCcEEeccccccceeec--cC-ccccceeEEcc
Q 040388 128 LKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAK--IS-SRCLKKLFFKG 178 (226)
Q Consensus 128 L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~--i~-~~~L~~L~l~~ 178 (226)
+++.++.++.... . +..+++|+.|+++++.--..++ +. -++|++|++.+
T Consensus 226 l~~~~~~l~~~~~-~-~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~ 277 (313)
T d1ogqa_ 226 IHLAKNSLAFDLG-K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp EECCSSEECCBGG-G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccccccccccccc-c-cccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence 8888777765432 2 3566788888887754322332 21 24677777765
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.56 E-value=9.3e-08 Score=77.07 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=45.8
Q ss_pred CccEEEeccccccc----ccCccCCCcccEEEecce-ecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcc
Q 040388 12 SIVVLELQFCKLES----LRNNVTLSSLRKLCSSHV-YEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLK 83 (226)
Q Consensus 12 sL~~L~L~~c~~~~----~~~~~~l~sLk~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk 83 (226)
.++.|+|+++.+.- ++....+++|++|+|+++ .+++. +..-+.++++|++|+++++.- ..+ .+..+++|+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l-~~~~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECC-EEECCGGGGGCTTCC
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccc-cccccccccchhhhc
Confidence 47778887776541 123346778888888763 33221 222356677788888877632 211 133456777
Q ss_pred eEEeccCC
Q 040388 84 EFKAYDNF 91 (226)
Q Consensus 84 ~L~l~~c~ 91 (226)
.++++.+.
T Consensus 129 ~l~l~~N~ 136 (313)
T d1ogqa_ 129 TLDFSYNA 136 (313)
T ss_dssp EEECCSSE
T ss_pred cccccccc
Confidence 77777664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=3.3e-08 Score=76.72 Aligned_cols=172 Identities=13% Similarity=0.047 Sum_probs=92.5
Q ss_pred CCCccccccCCccEEEecccccccc-cC-ccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe---c
Q 040388 2 NLPQVAFNAESIVVLELQFCKLESL-RN-NVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE---L 76 (226)
Q Consensus 2 ~lP~~~~~~~sL~~L~L~~c~~~~~-~~-~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~---i 76 (226)
.+|..++ +++++|+++++.+... .. ..++++|++|+++++.+....-...+.+++.++++.+..+.++..+. +
T Consensus 22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~ 99 (242)
T d1xwdc1 22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 99 (242)
T ss_dssp SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence 3566655 4788999998887633 22 35688999999988865221111125567888888888877776654 3
Q ss_pred CCCCCcceEEeccCCCceEEEE--ecceeeEEE---eCCC--CccccccccCc-ccCcEEEeeccccCchhHHHHHhcCC
Q 040388 77 PDLNNLKEFKAYDNFRLQRLHI--NGVNVCSID---LASR--RTLSDINVAPC-KHLEKLKLSGLYIIDECPSNQVSKLQ 148 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~~~--~~~~L~~L~---~~~~--~~~~~~~~~~~-~~L~~L~L~~~~it~~~~~~l~~~~~ 148 (226)
.++++|+.+.+.++. +..... ..++++.+. ..+. .......+.++ ..++.+++.++.++... .. ....+
T Consensus 100 ~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~-~~-~~~~~ 176 (242)
T d1xwdc1 100 QNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-NC-AFNGT 176 (242)
T ss_dssp ECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-TT-TTTTC
T ss_pred cccccccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeecccccccccc-cc-cccch
Confidence 457888888888874 221110 122233322 2221 00011122222 36666777776665421 11 12234
Q ss_pred CCcEEeccccccceeecc---C-ccccceeEEcc
Q 040388 149 FLEYLHIDCCMKLRSAKI---S-SRCLKKLFFKG 178 (226)
Q Consensus 149 ~Le~L~l~~C~~L~~l~i---~-~~~L~~L~l~~ 178 (226)
+++.+....+..++.+.. . .++|++|++.+
T Consensus 177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~ 210 (242)
T d1xwdc1 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210 (242)
T ss_dssp CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT
T ss_pred hhhccccccccccccccHHHhcCCCCCCEEECCC
Confidence 444444444455555532 1 24566666554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.3e-07 Score=75.24 Aligned_cols=123 Identities=17% Similarity=0.169 Sum_probs=63.5
Q ss_pred CCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ecCCCCCcceEEeccCCCceEEE----Eeccee
Q 040388 31 TLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---ELPDLNNLKEFKAYDNFRLQRLH----INGVNV 103 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i~~~~~Lk~L~l~~c~~l~~~~----~~~~~L 103 (226)
++++|++|+++++.+.... ......++.|+.++++++ .++.+ .+.++++|+.|+++++. ++.+. ...++|
T Consensus 103 ~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L 179 (284)
T d1ozna_ 103 GLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSL 179 (284)
T ss_dssp TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred ccccCCEEecCCccccccc-ccccchhcccchhhhccc-cccccChhHhccccchhhcccccCc-ccccchhhhcccccc
Confidence 4556666666665542111 112344555666665554 22222 12334556666666552 33221 123445
Q ss_pred eEEEeCCC--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 104 CSIDLASR--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 104 ~~L~~~~~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
+++...+. ....+..+..+++|++|++++|.++... ...+..+++|+.|++++
T Consensus 180 ~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLND 234 (284)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCS
T ss_pred chhhhhhccccccChhHhhhhhhccccccccccccccc-ccccccccccCEEEecC
Confidence 55552221 1112234567778888888888876543 34456778888888876
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.48 E-value=1.5e-07 Score=75.53 Aligned_cols=174 Identities=12% Similarity=0.100 Sum_probs=103.4
Q ss_pred CCCcc-ccccCCccEEEecccccccc-cC-ccCCCcccEEEecceecCHH-------------------H-HHHHHhcCC
Q 040388 2 NLPQV-AFNAESIVVLELQFCKLESL-RN-NVTLSSLRKLCSSHVYEDDQ-------------------V-IEDFVAGCP 58 (226)
Q Consensus 2 ~lP~~-~~~~~sL~~L~L~~c~~~~~-~~-~~~l~sLk~L~L~~~~~~~~-------------------~-l~~l~~~cp 58 (226)
.+|+. +.++++|++|++++|.+... +. ...+++|+.|+++++.++.- . .......++
T Consensus 45 ~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~ 124 (305)
T d1xkua_ 45 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN 124 (305)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccc
Confidence 35654 44678888888888876532 22 34678888888877653100 0 011122333
Q ss_pred ccceeeeecc---------------CCceEEecC----------CCCCcceEEeccCCCceEE---EEecceeeEEEeCC
Q 040388 59 LIEYMHVFDC---------------GGLKCLELP----------DLNNLKEFKAYDNFRLQRL---HINGVNVCSIDLAS 110 (226)
Q Consensus 59 ~Le~L~l~~c---------------~~l~~l~i~----------~~~~Lk~L~l~~c~~l~~~---~~~~~~L~~L~~~~ 110 (226)
.++.++...+ ..++.+.++ .+++|++|+++++...... ...++++++++..+
T Consensus 125 ~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~ 204 (305)
T d1xkua_ 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204 (305)
T ss_dssp TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred cccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccc
Confidence 3333333222 113344332 3578999999887522211 11346788888544
Q ss_pred C--CccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccccccceeecc----------CccccceeEEcc
Q 040388 111 R--RTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCCMKLRSAKI----------SSRCLKKLFFKG 178 (226)
Q Consensus 111 ~--~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C~~L~~l~i----------~~~~L~~L~l~~ 178 (226)
. .......+.++++|++|++++|.++.. + .-+..+++|+.|+++++ .++.+.- ....|+.+++.+
T Consensus 205 n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p-~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~ 281 (305)
T d1xkua_ 205 NSISAVDNGSLANTPHLRELHLNNNKLVKV-P-GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFS 281 (305)
T ss_dssp SCCCEECTTTGGGSTTCCEEECCSSCCSSC-C-TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred ccccccccccccccccceeeeccccccccc-c-cccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCC
Confidence 2 222233467889999999999998753 2 23467899999999995 5666531 124688888776
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.42 E-value=4.7e-07 Score=67.91 Aligned_cols=112 Identities=18% Similarity=0.081 Sum_probs=61.6
Q ss_pred CCccccccCCccEEEeccccccc-c--cCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEE---ec
Q 040388 3 LPQVAFNAESIVVLELQFCKLES-L--RNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCL---EL 76 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~-~--~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l---~i 76 (226)
+|..++ +++++|+|++|.+.. . .....+++|+.|+|+++.+..- ......+.+.|++|+++++ .++.+ .+
T Consensus 23 iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F 98 (192)
T d1w8aa_ 23 IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN-KIKEISNKMF 98 (192)
T ss_dssp CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC-CCCEECSSSS
T ss_pred cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccc-cccccCHHHH
Confidence 455543 466677777766531 1 2223566777777766655211 1122445566677766665 33333 23
Q ss_pred CCCCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCc
Q 040388 77 PDLNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIID 137 (226)
Q Consensus 77 ~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~ 137 (226)
.++++|++|+++++. ++.+ ..-.+...++|++++++++.+..
T Consensus 99 ~~l~~L~~L~L~~N~-l~~i------------------~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 99 LGLHQLKTLNLYDNQ-ISCV------------------MPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCTTCCEEECCSSC-CCEE------------------CTTSSTTCTTCCEEECTTCCBCC
T ss_pred hCCCcccccccCCcc-cccc------------------CHHHhcCCccccccccccccccc
Confidence 455666666666652 2221 11235567788888888887653
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.41 E-value=1.9e-07 Score=76.26 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=54.8
Q ss_pred ccCcccCcEEEeeccccCchhHH---HHHhcCCCCcEEecccccc----ceee----c-cCccccceeEEcc-eE-----
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPS---NQVSKLQFLEYLHIDCCMK----LRSA----K-ISSRCLKKLFFKG-EF----- 180 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~---~l~~~~~~Le~L~l~~C~~----L~~l----~-i~~~~L~~L~l~~-~~----- 180 (226)
+..+++|++|++++|.+++.... ..+..+++|+.|++++|.- ...+ . .....|+.|++++ ++
T Consensus 211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~ 290 (344)
T d2ca6a1 211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 290 (344)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence 45778999999999998776433 4457889999999999841 1111 1 2345788999886 11
Q ss_pred -------EEeCCCcceEEEeecc
Q 040388 181 -------MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 181 -------~i~~p~L~sl~~~g~~ 196 (226)
.-+.|+|+.+...|+.
T Consensus 291 ~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 291 RTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHccCCCCCEEECCCCc
Confidence 1246899999888873
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.39 E-value=1.3e-07 Score=71.12 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=85.8
Q ss_pred ccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceE--EecCCCCCcceEEeccC
Q 040388 13 IVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKC--LELPDLNNLKEFKAYDN 90 (226)
Q Consensus 13 L~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--l~i~~~~~Lk~L~l~~c 90 (226)
.++++.++..+...|..+ .+++++|+|+++.++...-...+.+.++|++|+++++.-... -.+.++++|++|+++++
T Consensus 10 ~~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 457788877776544433 478999999999874322233457788999999988743221 12345688888888877
Q ss_pred CCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 91 FRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 91 ~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
.++.+. ...+.++++|++|+|++|.++.-. ...+..+++|++|++++.
T Consensus 89 -~l~~l~------------------~~~F~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N 136 (192)
T d1w8aa_ 89 -KIKEIS------------------NKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp -CCCEEC------------------SSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTC
T ss_pred -cccccC------------------HHHHhCCCcccccccCCccccccC-HHHhcCCccccccccccc
Confidence 333321 123567889999999999987642 344567899999999874
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2.5e-07 Score=67.87 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=65.1
Q ss_pred CCccccccCCccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--CceEE-ecCCC
Q 040388 3 LPQVAFNAESIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG--GLKCL-ELPDL 79 (226)
Q Consensus 3 lP~~~~~~~sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~l~~l-~i~~~ 79 (226)
+|.....+++|++|+|++|.+...+....+++|++|++++|.++.- ...+..++|+|+.|++++|. .+..+ .+.++
T Consensus 33 i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l 111 (162)
T d1a9na_ 33 IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSLVELGDLDPLASL 111 (162)
T ss_dssp CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGC
T ss_pred cCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCC-Cccccccccccccceeccccccccccccccccc
Confidence 5544456889999999999987545556799999999999987321 11245679999999999984 23222 24567
Q ss_pred CCcceEEeccCC
Q 040388 80 NNLKEFKAYDNF 91 (226)
Q Consensus 80 ~~Lk~L~l~~c~ 91 (226)
++|+++++++|.
T Consensus 112 ~~L~~L~l~~N~ 123 (162)
T d1a9na_ 112 KSLTYLCILRNP 123 (162)
T ss_dssp TTCCEEECCSSG
T ss_pred cccchhhcCCCc
Confidence 889999988873
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.21 E-value=1.1e-06 Score=71.47 Aligned_cols=192 Identities=19% Similarity=0.097 Sum_probs=122.3
Q ss_pred ccccccCCccEEEeccccccc-----c-cCccCCCcccEEEecceec------CHHH---HHHHHhcCCccceeeeeccC
Q 040388 5 QVAFNAESIVVLELQFCKLES-----L-RNNVTLSSLRKLCSSHVYE------DDQV---IEDFVAGCPLIEYMHVFDCG 69 (226)
Q Consensus 5 ~~~~~~~sL~~L~L~~c~~~~-----~-~~~~~l~sLk~L~L~~~~~------~~~~---l~~l~~~cp~Le~L~l~~c~ 69 (226)
..+-...+|+.|+|++|.+.. . ......++|+.|.++++.. .... +...+..|++|++|++++|.
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 345567889999999987641 1 1234678999999987754 1223 34446679999999999884
Q ss_pred C----ceEE--ecCCCCCcceEEeccCCC-----------ceEE-----EEecceeeEEEeCCCC-cc-----ccccccC
Q 040388 70 G----LKCL--ELPDLNNLKEFKAYDNFR-----------LQRL-----HINGVNVCSIDLASRR-TL-----SDINVAP 121 (226)
Q Consensus 70 ~----l~~l--~i~~~~~Lk~L~l~~c~~-----------l~~~-----~~~~~~L~~L~~~~~~-~~-----~~~~~~~ 121 (226)
- ...+ .+..+++|+++++++|.. +... ....+.|+.+...+.. .. ....+..
T Consensus 105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~ 184 (344)
T d2ca6a1 105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184 (344)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence 2 1111 122468999999998851 1110 1134677787754321 11 0112346
Q ss_pred cccCcEEEeeccccCchhH----HHHHhcCCCCcEEecccccc----ceee---ccCccccceeEEcc-e--------E-
Q 040388 122 CKHLEKLKLSGLYIIDECP----SNQVSKLQFLEYLHIDCCMK----LRSA---KISSRCLKKLFFKG-E--------F- 180 (226)
Q Consensus 122 ~~~L~~L~L~~~~it~~~~----~~l~~~~~~Le~L~l~~C~~----L~~l---~i~~~~L~~L~l~~-~--------~- 180 (226)
++.|++|++++|.+++... ...+..+++|+.|+++++.- .+.+ --..++|+.|++.+ . +
T Consensus 185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~ 264 (344)
T d2ca6a1 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 264 (344)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence 7889999999999987643 33456789999999988641 1112 12346799999876 1 1
Q ss_pred ----EEeCCCcceEEEeecc
Q 040388 181 ----MLDTSNLSTFEYQGNL 196 (226)
Q Consensus 181 ----~i~~p~L~sl~~~g~~ 196 (226)
....+.|+++...++.
T Consensus 265 ~~l~~~~~~~L~~L~ls~N~ 284 (344)
T d2ca6a1 265 DAFSKLENIGLQTLRLQYNE 284 (344)
T ss_dssp HHHHTCSSCCCCEEECCSSC
T ss_pred HHhhhccCCCCCEEECCCCc
Confidence 1234679999888774
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.19 E-value=1.3e-06 Score=70.35 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=32.5
Q ss_pred CccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC
Q 040388 12 SIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG 69 (226)
Q Consensus 12 sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 69 (226)
+|++|++.++.+...+. -.++|++|+++++.+.. +.. ...+++|+.|+++++.
T Consensus 79 ~L~~L~l~~n~l~~l~~--lp~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~~~ 131 (353)
T d1jl5a_ 79 SLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNS 131 (353)
T ss_dssp TCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC
T ss_pred hhhhhhhhhcccchhhh--hcccccccccccccccc--ccc-hhhhccceeecccccc
Confidence 45555555544432111 12479999999988732 122 4567899999998763
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.00 E-value=1.4e-06 Score=60.72 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=64.0
Q ss_pred cccccCCccEEEeccccccccc-CccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccC--CceEE-ecCCCCC
Q 040388 6 VAFNAESIVVLELQFCKLESLR-NNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCG--GLKCL-ELPDLNN 81 (226)
Q Consensus 6 ~~~~~~sL~~L~L~~c~~~~~~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~l~~l-~i~~~~~ 81 (226)
.+..+++|++|++++|.+...+ ....+++|+.|+++++.++. +.. +..+|+|++|+++++. .+..+ .+..+++
T Consensus 15 ~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~ 91 (124)
T d1dcea3 15 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPR 91 (124)
T ss_dssp CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCccCCCCCchhhcCCCC
Confidence 4678899999999999987543 34579999999999999843 222 6789999999999874 22221 3456899
Q ss_pred cceEEeccCC
Q 040388 82 LKEFKAYDNF 91 (226)
Q Consensus 82 Lk~L~l~~c~ 91 (226)
|+.++++++.
T Consensus 92 L~~L~l~~N~ 101 (124)
T d1dcea3 92 LVLLNLQGNS 101 (124)
T ss_dssp CCEEECTTSG
T ss_pred CCEEECCCCc
Confidence 9999999874
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=97.99 E-value=7.3e-08 Score=73.12 Aligned_cols=103 Identities=19% Similarity=0.144 Sum_probs=53.9
Q ss_pred CCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe--cCCCCCcceEEeccCCCceEEEEecceeeEEEe
Q 040388 31 TLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE--LPDLNNLKEFKAYDNFRLQRLHINGVNVCSIDL 108 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~--i~~~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~ 108 (226)
.+++|++|+|+++.+++ +.. +.++++|+.|++++|. ++.+. ...+++|+.|++++|. +..+
T Consensus 46 ~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~-i~~l------------ 108 (198)
T d1m9la_ 46 TLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASL------------ 108 (198)
T ss_dssp HTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE-CCCH------------
T ss_pred cccccceeECcccCCCC--ccc-ccCCccccChhhcccc-ccccccccccccccccccccccc-cccc------------
Confidence 46777777777777632 111 4456677777777662 22110 0112345555555441 1110
Q ss_pred CCCCccccccccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEecccc
Q 040388 109 ASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 109 ~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~C 158 (226)
-.+..+++|++|++++|.+++......+..+++|+.|++.++
T Consensus 109 --------~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 109 --------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp --------HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred --------ccccccccccccccccchhccccccccccCCCccceeecCCC
Confidence 023455667777777776655321123456677777777664
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=1.7e-06 Score=71.91 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=71.9
Q ss_pred CccEEEeccccccc---ccCccCCCcccEEEecceecCHHHHHHH---HhcCCccceeeeeccCC----ceEE--ec-CC
Q 040388 12 SIVVLELQFCKLES---LRNNVTLSSLRKLCSSHVYEDDQVIEDF---VAGCPLIEYMHVFDCGG----LKCL--EL-PD 78 (226)
Q Consensus 12 sL~~L~L~~c~~~~---~~~~~~l~sLk~L~L~~~~~~~~~l~~l---~~~cp~Le~L~l~~c~~----l~~l--~i-~~ 78 (226)
.|++|+++++.+.. ......++++|+|+|++|.+++++++.+ +..||+|++|++++|.- ...+ .+ ..
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 57888888887752 1222357888888998888877655444 57788888888887631 1111 01 11
Q ss_pred CCCcceEEeccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCchhHHHH
Q 040388 79 LNNLKEFKAYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDECPSNQ 143 (226)
Q Consensus 79 ~~~Lk~L~l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~~~~~l 143 (226)
..+|++|++++|. +++.. . ......+..+++|++|++++|.+++..+..+
T Consensus 83 ~~~L~~L~L~~n~-it~~~-----~---------~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l 132 (460)
T d1z7xw1 83 SCKIQKLSLQNCC-LTGAG-----C---------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 132 (460)
T ss_dssp TCCCCEEECTTSC-CBGGG-----H---------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred CCCCCEEECCCCC-ccccc-----c---------ccccchhhccccccccccccccchhhhhhhh
Confidence 2467777777763 22100 0 0001124577899999999998877654443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=7.7e-06 Score=62.80 Aligned_cols=159 Identities=13% Similarity=0.151 Sum_probs=85.7
Q ss_pred CCcccc-ccCCccEEEeccccccc-c-c-CccCCCcccEEEeccee-cCHHHHHHHHhcCCccceeeeeccCCceEE-ec
Q 040388 3 LPQVAF-NAESIVVLELQFCKLES-L-R-NNVTLSSLRKLCSSHVY-EDDQVIEDFVAGCPLIEYMHVFDCGGLKCL-EL 76 (226)
Q Consensus 3 lP~~~~-~~~sL~~L~L~~c~~~~-~-~-~~~~l~sLk~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l-~i 76 (226)
+|...| .+++|++|++++|.+.. . . ....++.++++.+..+. +.. .....+.++|+|++|++.++. +... ..
T Consensus 44 l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~~L~~l~l~~~~-l~~~~~~ 121 (242)
T d1xwdc1 44 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTG-IKHLPDV 121 (242)
T ss_dssp ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEECCTTCCEEEEESCC-CCSCCCC
T ss_pred cChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc-cccccccccccccccccchhh-hcccccc
Confidence 566554 68999999999997642 1 2 23468899999887643 211 112236789999999999873 2222 12
Q ss_pred CCCCCcceEEec--cCCCceEEEEe-----cceeeEEEeCCC-CccccccccCcccCcEEE-eeccccCchhHHHHHhcC
Q 040388 77 PDLNNLKEFKAY--DNFRLQRLHIN-----GVNVCSIDLASR-RTLSDINVAPCKHLEKLK-LSGLYIIDECPSNQVSKL 147 (226)
Q Consensus 77 ~~~~~Lk~L~l~--~c~~l~~~~~~-----~~~L~~L~~~~~-~~~~~~~~~~~~~L~~L~-L~~~~it~~~~~~l~~~~ 147 (226)
..+.+++.+... .+..+..+... ...++.++..+. ............+++++. +.++.+++- ....+.++
T Consensus 122 ~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l-~~~~f~~l 200 (242)
T d1xwdc1 122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL-PNDVFHGA 200 (242)
T ss_dssp TTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCC-CTTTTTTS
T ss_pred cccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccc-cHHHhcCC
Confidence 223444444322 22233333211 134555664332 111111112334444443 455556542 23445778
Q ss_pred CCCcEEeccccccceeec
Q 040388 148 QFLEYLHIDCCMKLRSAK 165 (226)
Q Consensus 148 ~~Le~L~l~~C~~L~~l~ 165 (226)
++|+.|+++++ .++.++
T Consensus 201 ~~L~~L~Ls~N-~l~~l~ 217 (242)
T d1xwdc1 201 SGPVILDISRT-RIHSLP 217 (242)
T ss_dssp CCCSEEECTTS-CCCCCC
T ss_pred CCCCEEECCCC-cCCccC
Confidence 88888888874 355543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=4.1e-06 Score=69.56 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=53.3
Q ss_pred cccCCccEEEecccccccc-----c-CccCCCcccEEEecceecCHHHHHHHHhc----CCccceeeeeccCCceE----
Q 040388 8 FNAESIVVLELQFCKLESL-----R-NNVTLSSLRKLCSSHVYEDDQVIEDFVAG----CPLIEYMHVFDCGGLKC---- 73 (226)
Q Consensus 8 ~~~~sL~~L~L~~c~~~~~-----~-~~~~l~sLk~L~L~~~~~~~~~l~~l~~~----cp~Le~L~l~~c~~l~~---- 73 (226)
..++++++|+|++|.+... . ....+++|+.|+|+++.+++.++..+... .+.|++|++++|. +..
T Consensus 24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~ 102 (460)
T d1z7xw1 24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG 102 (460)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccc
Confidence 3467788888888876410 1 11357788888888888777666666543 3568888888773 221
Q ss_pred -E--ecCCCCCcceEEeccC
Q 040388 74 -L--ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 74 -l--~i~~~~~Lk~L~l~~c 90 (226)
+ .+..+++|++|++++|
T Consensus 103 ~l~~~l~~~~~L~~L~L~~N 122 (460)
T d1z7xw1 103 VLSSTLRTLPTLQELHLSDN 122 (460)
T ss_dssp HHHHHTTSCTTCCEEECCSS
T ss_pred cccchhhccccccccccccc
Confidence 1 1345677888877766
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=9.5e-05 Score=53.15 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=16.6
Q ss_pred hcCCccceeeeeccCCceEEe---cCCCCCcceEEeccC
Q 040388 55 AGCPLIEYMHVFDCGGLKCLE---LPDLNNLKEFKAYDN 90 (226)
Q Consensus 55 ~~cp~Le~L~l~~c~~l~~l~---i~~~~~Lk~L~l~~c 90 (226)
.+.++|+.|+++++ +++.+. +.++++|++|+++++
T Consensus 53 ~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 53 RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred ccccccCcceeecc-ccCCcccccccccccccceeccCC
Confidence 34455555555544 233331 233455555555555
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=97.44 E-value=0.00015 Score=57.81 Aligned_cols=50 Identities=20% Similarity=0.056 Sum_probs=24.0
Q ss_pred CccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeecc
Q 040388 12 SIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 12 sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 68 (226)
++++|+|+++.+...+. ..++|++|+|+++.++ .+-...++|++|+++++
T Consensus 39 ~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~-----~lp~~~~~L~~L~l~~n 88 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPE--LPPHLESLVASCNSLT-----ELPELPQSLKSLLVDNN 88 (353)
T ss_dssp TCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCS-----SCCCCCTTCCEEECCSS
T ss_pred CCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCc-----ccccchhhhhhhhhhhc
Confidence 45566666655543222 2455666666655442 11122345555555544
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00024 Score=50.90 Aligned_cols=37 Identities=19% Similarity=-0.004 Sum_probs=19.6
Q ss_pred ccCcccCcEEEeeccccCchhHHHHHhcCCCCcEEeccc
Q 040388 119 VAPCKHLEKLKLSGLYIIDECPSNQVSKLQFLEYLHIDC 157 (226)
Q Consensus 119 ~~~~~~L~~L~L~~~~it~~~~~~l~~~~~~Le~L~l~~ 157 (226)
+.++++|++|+|++|.++.- ....+. ...|+.|++++
T Consensus 76 f~~l~~L~~L~Ls~N~l~~l-~~~~~~-~~~l~~L~L~~ 112 (156)
T d2ifga3 76 FHFTPRLSRLNLSFNALESL-SWKTVQ-GLSLQELVLSG 112 (156)
T ss_dssp GGSCSCCCEEECCSSCCSCC-CSTTTC-SCCCCEEECCS
T ss_pred ccccccccceeccCCCCccc-Chhhhc-cccccccccCC
Confidence 44556677777777666532 112222 23466666654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=2.6e-05 Score=56.57 Aligned_cols=119 Identities=18% Similarity=0.115 Sum_probs=66.5
Q ss_pred CccEEEecccccccccCccCCCcccEEEecceecCHHHHHHHHhcCCccceeeeeccCCceEEe-----cCCCCCcceEE
Q 040388 12 SIVVLELQFCKLESLRNNVTLSSLRKLCSSHVYEDDQVIEDFVAGCPLIEYMHVFDCGGLKCLE-----LPDLNNLKEFK 86 (226)
Q Consensus 12 sL~~L~L~~c~~~~~~~~~~l~sLk~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~l~~l~-----i~~~~~Lk~L~ 86 (226)
+.+.|+++++.... .......+..+....+ ....+..+...||.|+.|+++++. +..+. +..+++|+.|+
T Consensus 23 ~~~~Ldls~l~~~~--~l~~~~~~~~l~~~~~--~~~~l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~ 97 (162)
T d1koha1 23 SQQALDLKGLRSDP--DLVAQNIDVVLNRRSS--MAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILN 97 (162)
T ss_dssp SSCCBCCCCCSSCT--TTTTTTCCCCTTSHHH--HHHHHHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCC
T ss_pred hhCeeecccCCCCc--hhhhccchhhcchhhh--HhhhhHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccc
Confidence 45556666554331 1112222332323222 234455666789999999999983 33221 12367788777
Q ss_pred eccCCCceEEEEecceeeEEEeCCCCccccccccCcccCcEEEeeccccCch------hHHHHHhcCCCCcEEe
Q 040388 87 AYDNFRLQRLHINGVNVCSIDLASRRTLSDINVAPCKHLEKLKLSGLYIIDE------CPSNQVSKLQFLEYLH 154 (226)
Q Consensus 87 l~~c~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~it~~------~~~~l~~~~~~Le~L~ 154 (226)
++++. +.++ .....-...+|+.+++++|.++.. +...+...||+|+.|+
T Consensus 98 Ls~N~-i~~l------------------~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 98 LSGNE-LKSE------------------RELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp CTTSC-CCCG------------------GGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred cccCc-cccc------------------hhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 77763 2110 011111234688899999887542 3346678889999875
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.88 E-value=0.0005 Score=49.70 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=15.8
Q ss_pred CCcccEEEecce-ecCHHHHHHH---HhcCCccceeeeecc
Q 040388 32 LSSLRKLCSSHV-YEDDQVIEDF---VAGCPLIEYMHVFDC 68 (226)
Q Consensus 32 l~sLk~L~L~~~-~~~~~~l~~l---~~~cp~Le~L~l~~c 68 (226)
.|+|+.|+|+++ .++++.+..+ +..++.|++|++++|
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n 54 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 54 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence 345555555543 2344433332 233344444444443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.74 E-value=0.00034 Score=50.67 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=58.5
Q ss_pred ccCCccEEEecccc-ccc-----c-cCccCCCcccEEEecceecCHHH---HHHHHhcCCccceeeeeccCC----ceEE
Q 040388 9 NAESIVVLELQFCK-LES-----L-RNNVTLSSLRKLCSSHVYEDDQV---IEDFVAGCPLIEYMHVFDCGG----LKCL 74 (226)
Q Consensus 9 ~~~sL~~L~L~~c~-~~~-----~-~~~~~l~sLk~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~c~~----l~~l 74 (226)
+.++|++|+|+++. +.. . ......+.|++|+|+++.++++. +...+..++.|++|++++|.- ...+
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 46899999999864 541 1 12235688999999999997655 445567889999999999842 1111
Q ss_pred --ecCCCCCcceEEeccC
Q 040388 75 --ELPDLNNLKEFKAYDN 90 (226)
Q Consensus 75 --~i~~~~~Lk~L~l~~c 90 (226)
.+...++|++|+++++
T Consensus 93 ~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHHhCCcCCEEECCCC
Confidence 2445688898888766
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.58 E-value=0.00069 Score=48.72 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=62.8
Q ss_pred CCCcccEEEecce-ecCHHHHHHHH---hcCCccceeeeeccCC----ceEE--ecCCCCCcceEEeccCCCceEEEEec
Q 040388 31 TLSSLRKLCSSHV-YEDDQVIEDFV---AGCPLIEYMHVFDCGG----LKCL--ELPDLNNLKEFKAYDNFRLQRLHING 100 (226)
Q Consensus 31 ~l~sLk~L~L~~~-~~~~~~l~~l~---~~cp~Le~L~l~~c~~----l~~l--~i~~~~~Lk~L~l~~c~~l~~~~~~~ 100 (226)
+.|+|++|+|+++ .++++.+..+. ..++.|++|++++|.- ...+ .+...++++.+++.+|. +..
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~-~~~----- 88 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG----- 88 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH-----
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc-ccc-----
Confidence 4578888888774 35666655554 3677788888877731 1111 01223566666665553 100
Q ss_pred ceeeEEEeCCCCccccccccCcccCcEEEee--ccccCchhH---HHHHhcCCCCcEEecccc
Q 040388 101 VNVCSIDLASRRTLSDINVAPCKHLEKLKLS--GLYIIDECP---SNQVSKLQFLEYLHIDCC 158 (226)
Q Consensus 101 ~~L~~L~~~~~~~~~~~~~~~~~~L~~L~L~--~~~it~~~~---~~l~~~~~~Le~L~l~~C 158 (226)
.|. ....-.+...++|+.+++. ++.+++... ...+..+++|+.|++...
T Consensus 89 --------~g~-~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 89 --------SGI-LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp --------HHH-HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred --------hhH-HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 000 0001124456778876664 556777543 344557888888888653
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.00032 Score=50.49 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=20.2
Q ss_pred CCCcccEEEecceecC-HHHHHHHHhcCCccceeeeecc
Q 040388 31 TLSSLRKLCSSHVYED-DQVIEDFVAGCPLIEYMHVFDC 68 (226)
Q Consensus 31 ~l~sLk~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c 68 (226)
.+++|++|+|++|.++ -+.+...+.+||+|+.|+++++
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N 101 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 101 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC
Confidence 3556666666666552 2223334455666666666654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.82 E-value=0.012 Score=41.71 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=68.0
Q ss_pred cccCCccEEEeccc-cccc-----c-cCccCCCcccEEEecceecCHHHHHH---HHhcCCccceeeeeccCC----ceE
Q 040388 8 FNAESIVVLELQFC-KLES-----L-RNNVTLSSLRKLCSSHVYEDDQVIED---FVAGCPLIEYMHVFDCGG----LKC 73 (226)
Q Consensus 8 ~~~~sL~~L~L~~c-~~~~-----~-~~~~~l~sLk~L~L~~~~~~~~~l~~---l~~~cp~Le~L~l~~c~~----l~~ 73 (226)
-+.++|++|+++++ .+.. . ......+.|++|+++++.+++++... .+..++.++.+++++|.- ...
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 45789999999985 3541 1 11136789999999999987665444 566789999999998753 111
Q ss_pred E--ecCCCCCcceEEeccCC-CceE--------EEEecceeeEEEeCC
Q 040388 74 L--ELPDLNNLKEFKAYDNF-RLQR--------LHINGVNVCSIDLAS 110 (226)
Q Consensus 74 l--~i~~~~~Lk~L~l~~c~-~l~~--------~~~~~~~L~~L~~~~ 110 (226)
+ .+...++|+.+.++.+. .+.+ +....++|+.|++..
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence 1 23446889988886553 2211 111467888888543
|