Citrus Sinensis ID: 040403

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620---

MSNQIRASSSLIRRLKQQMSNPAVLIQTRSFTPSEGQRPVIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQEELLEFVELNMWHPEYPTLVYRNE

ccHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHcHHHHccccccccHHHHHHHHHHccccccEEEEEccccccHHHHHHccccccccEEEEEcccccccccccccccccccHHHHHHHHHcccccccccccEEEEcccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHccccccHHHHHccEEEEEccccccccccccccccccccccccHHHcccccccccHHHHHHHccccEEEEcccccccccHHHHHHHHcccccccEEEEcccccccccccHHHHHHHccccEEEEEccccccEEccccEEEcccccccEEEccHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccHHHHHHHHHHccccccccccccccc

cccHccccHHHHHHcccccccHHHcccccccccccccccEEEEccHHHHHcccccccHHHccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHcccHHHHHHHcHHHHccccccEEEEHHHcccHHHHHcccccccccEEEEEccccEcccEccHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHccccccHHHHHHcEEEEccccEEEcccccccHHHHHHHHccccHccccccccccHHHHHHHccccEEEEEccccccccHHHHHHHHHHHccccEEEEccccHHHccccHHHHHHHcccccEEEEccccccEEcccccEEccEEccHHHcHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccHHHHHHHHHHHccccccccHccccc

MSNQIRASSSLIRRLKQqmsnpavliqtrsftpsegqrpvivhkrsldilhdpwfnkgtafsmterdrldlrgllppnvmstdQQIERFMVDLKRLEVqardgptdpnaLAKWRILNRLHDRNETMYYKVLIANIEeyapivytptvglvcqnysglfrrprgmyfsaedrgemksmvynwpaeqVDMIVVTdgsrilglgdlgvqgigIAVGKLDLYVAaaginpqrvlpimidvgttnekllkdplylglqehrldgdeYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQgrsmidfpkqkIVVAGAGSAGLGVLNAARKTMARMLGnnesafdsarSQFWVVDakglitedrenidpdakpfARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMrgststrpaifamsnptnnaectpeeafsivgdniifasgspfkdvdlgnghighcnqgnnmylfpgvglgtllsgsrIISDGMLQAAAECLAEYMTEeevvkgkiypsisSIRNITKEVAAAVVKEALEEDLaegyrgvdareLQRFNQEELLEFVElnmwhpeyptlvyrne

msnqirasSSLIRRLKQQMSNPAVLIqtrsftpsegqrpVIVHKrsldilhdpwfNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVqardgptdpnalakwrilnrlhdrnETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNesafdsarsqFWVVDAKGLitedrenidpdakpfaRKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQEELLEfvelnmwhpeyptlvyrne

MSNQIRASSSLIRRLKQQMSNPAVLIQTRSFTPSEGQRPVIVHKRSLDILHDPWFNKGTAFSMTErdrldlrgllPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDvqgtagvavagllgavraqgrSMIDFPKQKIvvagagsaglgvlnaaRKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITkevaaavvkealeedlaeGYRGVDARELQRFNQEELLEFVELNMWHPEYPTLVYRNE

**************************************PVIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQ*******PNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGN***AFDSARSQFWVVDAKGLITED**********FARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEA**********************CTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQEELLEFVELNMWHPEYPTLVY***

****************************************IVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQ*RD**TDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQEELLEFVELNMWHPEYPTLV****

*********SLIRRLKQQMSNPAVLIQTRSFTPSEGQRPVIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQEELLEFVELNMWHPEYPTLVYRNE

**********************AVL*QTRSFTPSEGQRPVIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQEELLEFVELNMWHPEYPTLV****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		623	2.2.26 [Sep-21-2011]
P37221		626	NAD-dependent malic enzym	N/A	no	1.0	0.995	0.825	0.0
Q9SIU0		623	NAD-dependent malic enzym	yes	no	0.955	0.955	0.836	0.0
P37224		623	NAD-dependent malic enzym	N/A	no	0.991	0.991	0.797	0.0
P37225		601	NAD-dependent malic enzym	N/A	no	0.924	0.958	0.670	0.0
Q8L7K9		607	NAD-dependent malic enzym	no	no	0.921	0.945	0.654	0.0
Q8BMF3		604	NADP-dependent malic enzy	yes	no	0.911	0.940	0.414	1e-132
P28227		557	NADP-dependent malic enzy	N/A	no	0.852	0.953	0.428	1e-132
P06801		572	NADP-dependent malic enzy	no	no	0.863	0.940	0.415	1e-132
P40927		557	NADP-dependent malic enzy	N/A	no	0.866	0.969	0.415	1e-132
P13697		572	NADP-dependent malic enzy	yes	no	0.863	0.940	0.417	1e-132

>sp\|P37221\|MAOM_SOLTU NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1	Back alignment and function desciption

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/623 (82%), Positives = 571/623 (91%)

Query: 1   MSNQIRASSSLIRRLKQQMSNPAVLIQTRSFTPSEGQRPVIVHKRSLDILHDPWFNKGTA 60
            SNQ+R SS+L++RL Q+++       +R+FT +EG RP IVHKRSLDILHDPWFNKGTA
Sbjct: 4   FSNQMRLSSTLLKRLHQRVAAAVNSSSSRNFTTTEGHRPTIVHKRSLDILHDPWFNKGTA 63

Query: 61  FSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRLH 120
           FS TERDRL +RGLLPPNVMS +QQI RFM DLKRLEVQARDGP+DP  LAKWRILNRLH
Sbjct: 64  FSFTERDRLHIRGLLPPNVMSFEQQIARFMADLKRLEVQARDGPSDPYVLAKWRILNRLH 123

Query: 121 DRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYN 180
           DRNET+YYKVL+ NIEEYAPIVYTPTVGLVCQ YSGLFRRPRGMYFSAEDRGEM SMVYN
Sbjct: 124 DRNETLYYKVLMENIEEYAPIVYTPTVGLVCQKYSGLFRRPRGMYFSAEDRGEMMSMVYN 183

Query: 181 WPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTN 240
           WPA+QVDMIVVTDGSRILGLGDLG+QGIGIA+GKLDLYVAAAGINPQRVLP+MIDVGT N
Sbjct: 184 WPADQVDMIVVTDGSRILGLGDLGIQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTDN 243

Query: 241 EKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRYR 300
           E LLKDPLYLGLQ+HRLDG+EY+ VIDEFMEA+FTRWP+VIVQFEDFQSKWAFKLLQRYR
Sbjct: 244 ENLLKDPLYLGLQDHRLDGEEYIEVIDEFMEAVFTRWPHVIVQFEDFQSKWAFKLLQRYR 303

Query: 301 YKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTM 360
             YRMFNDD+QGTAGVA+AGLLGAVRAQGR MIDFPK KIVVAGAGSAG+GVLNAARKTM
Sbjct: 304 NNYRMFNDDIQGTAGVAIAGLLGAVRAQGRPMIDFPKMKIVVAGAGSAGIGVLNAARKTM 363

Query: 361 ARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASLV 420
           ARMLGN E AF+SARSQFWVVDAKGLITE REN+DPDA+PFARK+ EI RQGL EGA+L 
Sbjct: 364 ARMLGNTEIAFESARSQFWVVDAKGLITEARENVDPDARPFARKIKEIERQGLSEGATLA 423

Query: 421 EVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIV 480
           EVV++VKPDVLLGLSA GGLFSKEVLEA++ STSTRPAIF MSNPT NAECTPEEAFSI+
Sbjct: 424 EVVREVKPDVLLGLSACGGLFSKEVLEALKHSTSTRPAIFPMSNPTRNAECTPEEAFSIL 483

Query: 481 GDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAEC 540
           G+NIIFASGSPFKDVDLGNGH+GHCNQ NNM+LFPG+GLGTLLSGSRI+SDGMLQAAAEC
Sbjct: 484 GENIIFASGSPFKDVDLGNGHVGHCNQANNMFLFPGIGLGTLLSGSRIVSDGMLQAAAEC 543

Query: 541 LAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQE 600
           LA Y+TEEEV+KG IYPSIS IR+ITKEVAAAVVKEA+EEDLAEGYR +D+REL++ ++ 
Sbjct: 544 LAAYITEEEVLKGIIYPSISRIRDITKEVAAAVVKEAIEEDLAEGYREMDSRELRKLDEA 603

Query: 601 ELLEFVELNMWHPEYPTLVYRNE 623
           ++ EFVE NMW P+YPTLVY+ +
Sbjct: 604 QISEFVENNMWSPDYPTLVYKKD 626

Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 9

>sp\|Q9SIU0\|MAO1_ARATH NAD-dependent malic enzyme 1, mitochondrial OS=Arabidopsis thaliana GN=NAD-ME1 PE=1 SV=1	Back alignment and function description

>sp\|P37224\|MAOM_AMAHP NAD-dependent malic enzyme 65 kDa isoform, mitochondrial OS=Amaranthus hypochondriacus PE=1 SV=1	Back alignment and function description

>sp\|P37225\|MAON_SOLTU NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1	Back alignment and function description

>sp\|Q8L7K9\|MAO2_ARATH NAD-dependent malic enzyme 2, mitochondrial OS=Arabidopsis thaliana GN=NAD-ME2 PE=1 SV=1	Back alignment and function description

>sp\|Q8BMF3\|MAON_MOUSE NADP-dependent malic enzyme, mitochondrial OS=Mus musculus GN=Me3 PE=1 SV=2	Back alignment and function description

>sp\|P28227\|MAOX_ANAPL NADP-dependent malic enzyme OS=Anas platyrhynchos GN=ME1 PE=1 SV=1	Back alignment and function description

>sp\|P06801\|MAOX_MOUSE NADP-dependent malic enzyme OS=Mus musculus GN=Me1 PE=1 SV=2	Back alignment and function description

>sp\|P40927\|MAOX_COLLI NADP-dependent malic enzyme OS=Columba livia GN=ME1 PE=1 SV=1	Back alignment and function description

>sp\|P13697\|MAOX_RAT NADP-dependent malic enzyme OS=Rattus norvegicus GN=Me1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		623
224067419		627	predicted protein [Populus trichocarpa]	1.0	0.993	0.884	0.0
224136522		627	predicted protein [Populus trichocarpa]	1.0	0.993	0.875	0.0
255571113		626	malic enzyme, putative [Ricinus communis	0.996	0.992	0.867	0.0
225453250		625	PREDICTED: NAD-dependent malic enzyme 62	0.998	0.995	0.875	0.0
449432340		626	PREDICTED: NAD-dependent malic enzyme 1,	0.988	0.984	0.859	0.0
356503178		622	PREDICTED: NAD-dependent malic enzyme 62	0.988	0.990	0.848	0.0
357513071		628	Pentatricopeptide repeat-containing prot	0.996	0.988	0.841	0.0
297831838		622	hypothetical protein ARALYDRAFT_480310 [	0.995	0.996	0.821	0.0
585451		626	RecName: Full=NAD-dependent malic enzyme	1.0	0.995	0.825	0.0
15225438		623	NAD-dependent malic enzyme 1 [Arabidopsi	0.955	0.955	0.836	0.0

>gi\|224067419\|ref\|XP_002302483.1\| predicted protein [Populus trichocarpa] gi\|222844209\|gb\|EEE81756.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1152 bits (2981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/624 (88%), Positives = 592/624 (94%), Gaps = 1/624 (0%)

Query: 1   MSNQIRASSSLIRRLKQQMSNPAVLIQ-TRSFTPSEGQRPVIVHKRSLDILHDPWFNKGT 59
            SNQIRASSSLI+RL+Q+M+NPA L+Q TRSFT  EG RP IVHKRSLDILHDPWFNKGT
Sbjct: 4   FSNQIRASSSLIKRLQQRMTNPAALMQATRSFTTLEGHRPTIVHKRSLDILHDPWFNKGT 63

Query: 60  AFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRL 119
           AFSMTERDRLD+RGLLPPNVMS++QQI+RFMVDLKRLEVQARDGP+DPNALAKWRILNRL
Sbjct: 64  AFSMTERDRLDIRGLLPPNVMSSEQQIQRFMVDLKRLEVQARDGPSDPNALAKWRILNRL 123

Query: 120 HDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVY 179
           HDRNETMY+KVLIANIEEYAPIVYTPTVGL CQNYSGLFRRPRGMYFSAEDRGEM SMVY
Sbjct: 124 HDRNETMYFKVLIANIEEYAPIVYTPTVGLACQNYSGLFRRPRGMYFSAEDRGEMMSMVY 183

Query: 180 NWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTT 239
           NWPAEQVDMIVVTDGSRILGLGDLGVQGIGIA+GKLDLYVAAAGINPQRVLP+MIDVGT 
Sbjct: 184 NWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTN 243

Query: 240 NEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQRY 299
           NEKLLKDPLYLGLQEHRLDGDEY++VIDEFMEA+FTRWP+VIVQFEDFQSKWAFKLLQRY
Sbjct: 244 NEKLLKDPLYLGLQEHRLDGDEYIAVIDEFMEAVFTRWPHVIVQFEDFQSKWAFKLLQRY 303

Query: 300 RYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKT 359
           R  YRMFNDDVQGTAGVA+AGLLGAVRAQGR MIDFPKQKIVVAGAGSAG+GVLNAARKT
Sbjct: 304 RNAYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKQKIVVAGAGSAGIGVLNAARKT 363

Query: 360 MARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGASL 419
           MARMLGNNESAF+SA  QFWVVDAKGLITE+RENID +A PFARKV E SRQGL EGASL
Sbjct: 364 MARMLGNNESAFESAGRQFWVVDAKGLITEERENIDLEALPFARKVEEASRQGLREGASL 423

Query: 420 VEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSI 479
            EVV++VKPDVLLGLSAVGGLFSKEVLEA++GSTSTRPAIFAMSNPT NAECTPEEAFSI
Sbjct: 424 AEVVREVKPDVLLGLSAVGGLFSKEVLEALKGSTSTRPAIFAMSNPTKNAECTPEEAFSI 483

Query: 480 VGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAE 539
           VGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPG+GLGTLLSGSRIISDGMLQAAAE
Sbjct: 484 VGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAE 543

Query: 540 CLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQ 599
           CLA YMTEEEV+KG IYPS S IR+ITKEVAAAVVKEA+EEDLAEGYR +DAREL++ +Q
Sbjct: 544 CLAAYMTEEEVLKGIIYPSTSRIRDITKEVAAAVVKEAIEEDLAEGYREMDARELRKLSQ 603

Query: 600 EELLEFVELNMWHPEYPTLVYRNE 623
           EE+ E+V+ NMW P+YPTLVY+ +
Sbjct: 604 EEIEEYVKNNMWSPDYPTLVYKKD 627

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224136522\|ref\|XP_002326881.1\| predicted protein [Populus trichocarpa] gi\|222835196\|gb\|EEE73631.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255571113\|ref\|XP_002526507.1\| malic enzyme, putative [Ricinus communis] gi\|223534182\|gb\|EEF35898.1\| malic enzyme, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225453250\|ref\|XP_002265765.1\| PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Vitis vinifera] gi\|297734678\|emb\|CBI16729.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449432340\|ref\|XP_004133957.1\| PREDICTED: NAD-dependent malic enzyme 1, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356503178\|ref\|XP_003520388.1\| PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi\|357513071\|ref\|XP_003626824.1\| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi\|357513073\|ref\|XP_003626825.1\| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi\|355520846\|gb\|AET01300.1\| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi\|355520847\|gb\|AET01301.1\| Pentatricopeptide repeat-containing protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297831838\|ref\|XP_002883801.1\| hypothetical protein ARALYDRAFT_480310 [Arabidopsis lyrata subsp. lyrata] gi\|297329641\|gb\|EFH60060.1\| hypothetical protein ARALYDRAFT_480310 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|585451\|sp\|P37221.1\|MAOM_SOLTU RecName: Full=NAD-dependent malic enzyme 62 kDa isoform, mitochondrial; Short=NAD-ME; Flags: Precursor gi\|438249\|emb\|CAA80559.1\| malate dehydrogenase [Solanum tuberosum]	Back alignment and taxonomy information

>gi|15225438|ref|NP_178980.1| NAD-dependent malic enzyme 1 [Arabidopsis thaliana] gi|75265910|sp|Q9SIU0.1|MAO1_ARATH RecName: Full=NAD-dependent malic enzyme 1, mitochondrial; Short=AtNAD-ME1; Short=NAD-malic enzyme 1; Flags: Precursor gi|4558661|gb|AAD22679.1| malate oxidoreductase (malic enzyme) [Arabidopsis thaliana] gi|20268709|gb|AAM14058.1| putative malate oxidoreductase (malic enzyme) [Arabidopsis thaliana] gi|24030498|gb|AAN41396.1| putative malate oxidoreductase (malic enzyme) [Arabidopsis thaliana] gi|330251148|gb|AEC06242.1| NAD-dependent malic enzyme 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		623
TAIR\|locus:2054085		623	NAD-ME1 "AT2G13560" [Arabidops	0.993	0.993	0.718	1e-242
TAIR\|locus:2127038		607	NAD-ME2 "AT4G00570" [Arabidops	0.921	0.945	0.572	7.3e-178
MGI\|MGI:1916679		604	Me3 "malic enzyme 3, NADP(+)-d	0.462	0.476	0.465	2.8e-105
UNIPROTKB\|E9PMB9		581	ME3 "Malic enzyme" [Homo sapie	0.420	0.450	0.479	1.7e-103
UNIPROTKB\|Q16798		604	ME3 "NADP-dependent malic enzy	0.420	0.433	0.479	1.7e-103
UNIPROTKB\|F1PQ35		604	ME3 "Malic enzyme" [Canis lupu	0.420	0.433	0.479	2.2e-103
UNIPROTKB\|F1MPH4		603	ME3 "Malic enzyme" [Bos taurus	0.420	0.434	0.479	2.8e-101
DICTYBASE\|DDB_G0272524		544	malA "NADP-dependent malate de	0.402	0.461	0.475	1.2e-100
RGD\|3074		572	Me1 "malic enzyme 1, NADP(+)-d	0.799	0.870	0.390	2.5e-100
UNIPROTKB\|P13697		572	Me1 "NADP-dependent malic enzy	0.799	0.870	0.390	2.5e-100

TAIR\|locus:2054085 NAD-ME1 "AT2G13560" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2339 (828.4 bits), Expect = 1.0e-242, P = 1.0e-242
 Identities = 449/625 (71%), Positives = 510/625 (81%)

Query:     1 MSNQIRASSSLIRRL--KQQMSNPAVLIQTRSFTPSEGQRPVIVHKRSLDILHDPWFNKG 58
             ++N++R SSS + R+  ++ + + AV    RSFT SEG RP IVHK+ LDILHDPWFNKG
Sbjct:     3 IANKLRLSSSSLSRILHRRILYSSAV----RSFTTSEGHRPTIVHKQGLDILHDPWFNKG 58

Query:    59 TAFSMTEXXXXXXXXXXPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNR 118
             TAF+MTE          PPNVM ++QQI RFM DLKRLE QARDGP+DPNALAKWRILNR
Sbjct:    59 TAFTMTERNRLDLRGLLPPNVMDSEQQIFRFMTDLKRLEEQARDGPSDPNALAKWRILNR 118

Query:   119 LHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMV 178
             LHDRNETMYYKVLI NIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEM SMV
Sbjct:   119 LHDRNETMYYKVLINNIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMV 178

Query:   179 YNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGT 238
             YNWPAEQVDMIVVTDGSRILGLGDLGV GIGIAVGKLDLYVAAAGINPQRVLP+MIDVGT
Sbjct:   179 YNWPAEQVDMIVVTDGSRILGLGDLGVHGIGIAVGKLDLYVAAAGINPQRVLPVMIDVGT 238

Query:   239 TNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRWPNVIVQFEDFQSKWAFKLLQR 298
              NEKL  DP+YLGLQ+ RL+ D+Y+ VIDEFMEA++TRWP+VIVQFEDFQSKWAFKLLQR
Sbjct:   239 NNEKLRNDPMYLGLQQRRLEDDDYIDVIDEFMEAVYTRWPHVIVQFEDFQSKWAFKLLQR 298

Query:   299 YRYKYRMFNDDXXXXXXXXXXXXXXXXXXXXXSMIDFPKQKIXXXXXXXXXXXXXXXXRK 358
             YR  YRMFNDD                      MIDFPK KI                RK
Sbjct:   299 YRCTYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKMKIVVAGAGSAGIGVLNAARK 358

Query:   359 TMARMLGNNESAFDSARSQFWVVDAKGLITEDRENIDPDAKPFARKVNEISRQGLWEGAS 418
             TMARMLGN E+AFDSA+SQFWVVDA+GLITE RENIDP+A+PFARK  E+ RQGL EGA+
Sbjct:   359 TMARMLGNTETAFDSAQSQFWVVDAQGLITEGRENIDPEAQPFARKTKEMERQGLKEGAT 418

Query:   419 LVEVVQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFS 478
             LVEVV++VKPDVLLGLSAVGGLFSKEVLEAM+GSTSTRPAIFAMSNPT NAECTP++AFS
Sbjct:   419 LVEVVREVKPDVLLGLSAVGGLFSKEVLEAMKGSTSTRPAIFAMSNPTKNAECTPQDAFS 478

Query:   479 IVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAA 538
             I+G+N+IFASGSPFK+V+ GNGH+GHCNQGNNMYLFPG+GLGTLLSG+ I+SDGMLQAA+
Sbjct:   479 ILGENMIFASGSPFKNVEFGNGHVGHCNQGNNMYLFPGIGLGTLLSGAPIVSDGMLQAAS 538

Query:   539 ECLAEYMTEEEVVKGKIYPSISSIRNITXXXXXXXXXXXXXXXXXXGYRGVDARELQRFN 598
             ECLA YM+EEEV++G IYP IS IR+IT                  GYR +DARE+Q+ +
Sbjct:   539 ECLAAYMSEEEVLEGIIYPPISRIRDITKRIAAAVIKEAIEEDLVEGYREMDAREIQKLD 598

Query:   599 QEELLEFVELNMWHPEYPTLVYRNE 623
             +E L+E+VE NMW+PEYPTLVY+++
Sbjct:   599 EEGLMEYVENNMWNPEYPTLVYKDD 623

GO:0004470 "malic enzyme activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;ISS;IDA

GO:0006108 "malate metabolic process" evidence=IEA;ISS;IDA

GO:0016652 "oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0004471 "malate dehydrogenase (decarboxylating) activity" evidence=IDA

GO:0008948 "oxaloacetate decarboxylase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR\|locus:2127038 NAD-ME2 "AT4G00570" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

MGI\|MGI:1916679 Me3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PMB9 ME3 "Malic enzyme" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q16798 ME3 "NADP-dependent malic enzyme, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PQ35 ME3 "Malic enzyme" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MPH4 ME3 "Malic enzyme" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0272524 malA "NADP-dependent malate dehydrogenase (oxaloacetate-decarboxylating)" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

RGD\|3074 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P13697 Me1 "NADP-dependent malic enzyme" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q47WB0	MAO1_COLP3	1, ., 1, ., 1, ., 3, 8	0.3883	0.8844	0.9804	yes	no
B8E835	MAO1_SHEB2	1, ., 1, ., 1, ., 3, 8	0.3900	0.8844	0.9804	yes	no
Q8BMF3	MAON_MOUSE	1, ., 1, ., 1, ., 4, 0	0.4140	0.9117	0.9403	yes	no
P13697	MAOX_RAT	1, ., 1, ., 1, ., 4, 0	0.4173	0.8635	0.9405	yes	no
Q29558	MAOX_PIG	1, ., 1, ., 1, ., 4, 0	0.4299	0.8154	0.9120	yes	no
Q086X9	MAO1_SHEFN	1, ., 1, ., 1, ., 3, 8	0.3876	0.8828	0.9786	yes	no
A1S8W7	MAO1_SHEAM	1, ., 1, ., 1, ., 3, 8	0.3921	0.8812	0.9768	yes	no
Q9SIU0	MAO1_ARATH	1, ., 1, ., 1, ., 3, 9	0.8369	0.9550	0.9550	yes	no
Q5QWY8	MAO1_IDILO	1, ., 1, ., 1, ., 3, 8	0.3760	0.8796	0.9750	yes	no
Q8EAP2	MAO1_SHEON	1, ., 1, ., 1, ., 3, 8	0.3883	0.8844	0.9804	yes	no
Q7MJC0	MAO12_VIBVY	1, ., 1, ., 1, ., 3, 8	0.3906	0.8491	0.9463	yes	no
Q1QC40	MAO1_PSYCK	1, ., 1, ., 1, ., 3, 8	0.3868	0.8812	0.9803	yes	no
O34389	MAO3_BACSU	1, ., 1, ., 1, ., 3, 8	0.3888	0.8651	0.9522	yes	no
P37221	MAOM_SOLTU	1, ., 1, ., 1, ., 3, 9	0.8250	1.0	0.9952	N/A	no
P37224	MAOM_AMAHP	1, ., 1, ., 1, ., 3, 9	0.7971	0.9919	0.9919	N/A	no
P37225	MAON_SOLTU	1, ., 1, ., 1, ., 3, 9	0.6701	0.9245	0.9584	N/A	no
A6WSH0	MAO1_SHEB8	1, ., 1, ., 1, ., 3, 8	0.3900	0.8844	0.9804	yes	no
Q6TU48	MAOX_DICDI	1, ., 1, ., 1, ., 4, 0	0.4450	0.8202	0.9393	yes	no
A0KT69	MAO1_SHESA	1, ., 1, ., 1, ., 3, 8	0.3883	0.8844	0.9804	yes	no
A9L2F4	MAO1_SHEB9	1, ., 1, ., 1, ., 3, 8	0.3900	0.8844	0.9804	yes	no
A4Y3I1	MAO1_SHEPC	1, ., 1, ., 1, ., 3, 8	0.3917	0.8844	0.9804	yes	no
P48163	MAOX_HUMAN	1, ., 1, ., 1, ., 4, 0	0.4249	0.8443	0.9195	yes	no
Q0HFA9	MAO1_SHESM	1, ., 1, ., 1, ., 3, 8	0.3900	0.8844	0.9804	yes	no
Q4FRX3	MAO1_PSYA2	1, ., 1, ., 1, ., 3, 8	0.3989	0.8812	0.9803	yes	no
Q0HYM7	MAO1_SHESR	1, ., 1, ., 1, ., 3, 8	0.3900	0.8844	0.9804	yes	no
A3D0E1	MAO1_SHEB5	1, ., 1, ., 1, ., 3, 8	0.3900	0.8844	0.9804	yes	no
A1RNF8	MAO1_SHESW	1, ., 1, ., 1, ., 3, 8	0.3917	0.8844	0.9804	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.998
3rd Layer	1.1.1.39	0.994
4th Layer	1.1.1.40	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_II1218	hypothetical protein (627 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00100246	hypothetical protein (879 aa)		•	•		0.914
	eugene3.00030830	lactate dehydrogenase (EC-1.1.1.27) (351 aa)		•	•		0.906
	gw1.I.387.1	RecName- Full=Malic enzyme; (595 aa)	•	•		•	0.904
	estExt_Genewise1_v1.C_LG_III0888	hypothetical protein (596 aa)	•	•		•	0.904
	estExt_fgenesh4_pg.C_LG_XVIII0238	hypothetical protein (570 aa)	•	•		•	0.904
	estExt_Genewise1_v1.C_LG_XVIII2568	RecName- Full=NADP-dependent malic enzyme; Short=NADP-ME; EC=1.1.1.40; (591 aa)	•	•		•	0.904
	eugene3.00061692	hypothetical protein (570 aa)	•	•		•	0.904
	eugene3.00021309	malate dehydrogenase (EC-1.1.1.37) (332 aa)		•	•		0.901
	eugene3.00081537	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)		•	•		0.901
	estExt_Genewise1_v1.C_2730019	malate dehydrogenase (EC-1.1.1.37) (332 aa)		•	•		0.901

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		623
PLN03129		581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	0.0
PRK13529		563	PRK13529, PRK13529, malate dehydrogenase; Provisio	0.0
PTZ00317		559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	0.0
cd05312		279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	1e-122
COG0281		432	COG0281, SfcA, Malic enzyme [Energy production and	1e-114
pfam03949		255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	1e-111
pfam00390		182	pfam00390, malic, Malic enzyme, N-terminal domain	1e-101
smart00919		231	smart00919, Malic_M, Malic enzyme, NAD binding dom	1e-80
cd00762		254	cd00762, NAD_bind_malic_enz, NAD(P) binding domain	7e-59
PRK12862		763	PRK12862, PRK12862, malic enzyme; Reviewed	3e-29
cd05311		226	cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma	7e-29
PRK07232		752	PRK07232, PRK07232, bifunctional malic enzyme oxid	1e-24
PRK12861		764	PRK12861, PRK12861, malic enzyme; Reviewed	1e-22

>gnl\|CDD\|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional	Back alignment and domain information

 Score =  933 bits (2414), Expect = 0.0
 Identities = 320/617 (51%), Positives = 400/617 (64%), Gaps = 40/617 (6%)

Query: 7   ASSSLIRRLKQQMSNPAVLIQTRSFTPSEGQ--RPVIVHKRSLDILHDPWFNKGTAFSMT 64
           ASSSL    +++ +   V         +E Q   P +      D+L DP +NKG AF+ T
Sbjct: 1   ASSSLADARRRRSAAGGVEDVYGEDAATEEQPVTPWVRVASGYDLLRDPRYNKGLAFTET 60

Query: 65  ERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNRLHDRNE 124
           ERDRL LRGLLPP V+S + Q++RFM +L+ LE            LAK+R L  L +RNE
Sbjct: 61  ERDRLGLRGLLPPAVLSQELQVKRFMENLRALES----------PLAKYRALMDLQERNE 110

Query: 125 TMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAE 184
            ++Y+VLI NIEE  PIVYTPTVG  CQ Y  LFRRPRG+Y S +D+G + SM+ NWP  
Sbjct: 111 RLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPER 170

Query: 185 QVDMIVVTDGSRILGLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLL 244
            V +IVVTDG RILGLGDLGVQG+GI VGKLDLY AA GI P  VLP+ IDVGT NEKLL
Sbjct: 171 DVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLL 230

Query: 245 KDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRW-PNVIVQFEDFQSKWAFKLLQRYRYKY 303
            DP Y+GL++ RL G+EY  ++DEFMEA+  RW P V+VQFEDF +K AF+LLQRYR  +
Sbjct: 231 NDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTH 290

Query: 304 RMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAARKTMARM 363
             FNDD+QGTA VA+AGLL A+RA G    D   Q+I+ AGAG AG G+       M+R 
Sbjct: 291 LCFNDDIQGTAAVALAGLLAALRATG---GDLADQRILFAGAGEAGTGIAELIALAMSRQ 347

Query: 364 LGNNESAFDSARSQFWVVDAKGLITEDREN-IDPDAKPFARKVNEISRQGLWEGASLVEV 422
            G +E     AR + W+VD+KGL+T+ R++ + P  KPFA             GASL+E 
Sbjct: 348 TGISEEE---ARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE--------PGASLLEA 396

Query: 423 VQQVKPDVLLGLSAVGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGD 482
           V+ +KP VL+GLS VGG F+KEVLEAM  S + RP IFA+SNPT+ AECT EEA++  G 
Sbjct: 397 VKAIKPTVLIGLSGVGGTFTKEVLEAM-ASLNERPIIFALSNPTSKAECTAEEAYTWTGG 455

Query: 483 NIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGVGLGTLLSGSRIISDGMLQAAAECLA 542
             IFASGSPF  V+  NG   H  Q NN Y+FPG+GLG LLSG+  ++D ML AAAE LA
Sbjct: 456 RAIFASGSPFDPVEY-NGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALA 514

Query: 543 EYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQRFNQEEL 602
             +TEEE+ KG IYP  S IR+I+  VAAAV  +A EE LA                E+L
Sbjct: 515 AQVTEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPR----------PEDL 564

Query: 603 LEFVELNMWHPEYPTLV 619
           +E+ E  M+ P Y    
Sbjct: 565 VEYAESCMYSPVYRPYR 581

Length = 581

>gnl\|CDD\|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional	Back alignment and domain information

>gnl\|CDD\|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional	Back alignment and domain information

>gnl\|CDD\|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1	Back alignment and domain information

>gnl\|CDD\|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain	Back alignment and domain information

>gnl\|CDD\|215894 pfam00390, malic, Malic enzyme, N-terminal domain	Back alignment and domain information

>gnl\|CDD\|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain	Back alignment and domain information

>gnl\|CDD\|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme	Back alignment and domain information

>gnl\|CDD\|183799 PRK12862, PRK12862, malic enzyme; Reviewed	Back alignment and domain information

>gnl\|CDD\|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2	Back alignment and domain information

>gnl\|CDD\|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|183798 PRK12861, PRK12861, malic enzyme; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		623
KOG1257		582	consensus NADP+-dependent malic enzyme [Energy pro	100.0
PRK13529		563	malate dehydrogenase; Provisional	100.0
PTZ00317		559	NADP-dependent malic enzyme; Provisional	100.0
PLN03129		581	NADP-dependent malic enzyme; Provisional	100.0
COG0281		432	SfcA Malic enzyme [Energy production and conversio	100.0
PRK12862		763	malic enzyme; Reviewed	100.0
PRK12861		764	malic enzyme; Reviewed	100.0
PRK07232		752	bifunctional malic enzyme oxidoreductase/phosphotr	100.0
cd05312		279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	100.0
PF03949		255	Malic_M: Malic enzyme, NAD binding domain; InterPr	100.0
cd00762		254	NAD_bind_malic_enz NAD(P) binding domain of malic	100.0
PF00390		182	malic: Malic enzyme, N-terminal domain; InterPro:	100.0
cd05311		226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	100.0
cd05191		86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.75
PRK05476		425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.74
cd00401		413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.72
TIGR00936		406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.39
PLN02494		477	adenosylhomocysteinase	97.21
PLN02477		410	glutamate dehydrogenase	97.0
TIGR01035		417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.94
cd05211		217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.85
PF00670		162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.71
TIGR02853		287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.67
PRK14982		340	acyl-ACP reductase; Provisional	96.66
PRK00045		423	hemA glutamyl-tRNA reductase; Reviewed	96.66
PF01488		135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.64
PTZ00075		476	Adenosylhomocysteinase; Provisional	96.54
cd05213		311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.49
PRK08306		296	dipicolinate synthase subunit A; Reviewed	96.45
cd01076		227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.41
PRK14031		444	glutamate dehydrogenase; Provisional	96.26
PRK14192		283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.23
PTZ00079		454	NADP-specific glutamate dehydrogenase; Provisional	96.1
PRK08293		287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.92
PRK09414		445	glutamate dehydrogenase; Provisional	95.85
cd01080		168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.81
PRK14030		445	glutamate dehydrogenase; Provisional	95.78
cd05313		254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.59
PLN00203		519	glutamyl-tRNA reductase	95.53
cd01075		200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.41
PLN00106		323	malate dehydrogenase	95.24
PRK12549		284	shikimate 5-dehydrogenase; Reviewed	95.11
PRK14175		286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.99
cd01065		155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	94.76
COG0373		414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.7
TIGR00518		370	alaDH alanine dehydrogenase. The family of known L	94.6
PRK09260		288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.55
PF03807		96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.46
cd05197		425	GH4_glycoside_hydrolases Glycoside Hydrases Family	94.43
PRK09424		509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.14
PRK14191		285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.01
TIGR01809		282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	93.53
PRK13940		414	glutamyl-tRNA reductase; Provisional	93.49
PRK06223		307	malate dehydrogenase; Reviewed	93.39
PRK06035		291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.38
PRK06129		308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.27
cd01078		194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.27
TIGR00561		511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.26
cd05296		419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	93.22
cd00650		263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	93.19
TIGR02354		200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.17
PRK00676		338	hemA glutamyl-tRNA reductase; Validated	93.11
PRK11880		267	pyrroline-5-carboxylate reductase; Reviewed	92.95
PRK07531		495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	92.87
cd05212		140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	92.75
PTZ00117		319	malate dehydrogenase; Provisional	92.68
PRK08328		231	hypothetical protein; Provisional	92.56
PRK07066		321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.45
PRK06130		311	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.36
PRK00257		381	erythronate-4-phosphate dehydrogenase; Validated	92.24
PTZ00082		321	L-lactate dehydrogenase; Provisional	92.19
PRK10792		285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.17
PRK14176		287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.17
PTZ00325		321	malate dehydrogenase; Provisional	92.04
PRK12749		288	quinate/shikimate dehydrogenase; Reviewed	91.78
PRK12548		289	shikimate 5-dehydrogenase; Provisional	91.61
PRK00066		315	ldh L-lactate dehydrogenase; Reviewed	91.6
PRK14194		301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.34
PRK14027		283	quinate/shikimate dehydrogenase; Provisional	91.18
PRK14189		285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.04
PRK15438		378	erythronate-4-phosphate dehydrogenase PdxB; Provis	90.99
cd01079		197	NAD_bind_m-THF_DH NAD binding domain of methylene-	90.96
PRK14166		282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.96
cd05291		306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	90.89
TIGR02356		202	adenyl_thiF thiazole biosynthesis adenylyltransfer	90.61
PRK14183		281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.61
PRK08223		287	hypothetical protein; Validated	90.52
PF02826		178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	90.49
PRK05086		312	malate dehydrogenase; Provisional	90.48
PLN02928		347	oxidoreductase family protein	90.39
PRK14178		279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.16
cd00755		231	YgdL_like Family of activating enzymes (E1) of ubi	90.06
PRK07634		245	pyrroline-5-carboxylate reductase; Reviewed	90.0
PRK14190		284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.92
PRK08605		332	D-lactate dehydrogenase; Validated	89.78
PRK07680		273	late competence protein ComER; Validated	89.67
PRK14174		295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.66
COG0334		411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	89.39
PRK00258		278	aroE shikimate 5-dehydrogenase; Reviewed	89.3
PRK14619		308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.2
COG0169		283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	89.2
PF02882		160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	89.13
PF00056		141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	89.03
PF00899		135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	89.02
PRK14172		278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.95
PRK08762		376	molybdopterin biosynthesis protein MoeB; Validated	88.95
PRK01710		458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.8
PF01210		157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	88.62
PRK08374		336	homoserine dehydrogenase; Provisional	88.49
PF00208		244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	88.37
PLN02602		350	lactate dehydrogenase	88.3
PRK14179		284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.27
PRK14177		284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.16
PRK15076		431	alpha-galactosidase; Provisional	88.15
cd05293		312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	88.14
PRK08410		311	2-hydroxyacid dehydrogenase; Provisional	87.54
PRK14618		328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.46
PRK14184		286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.45
COG0345		266	ProC Pyrroline-5-carboxylate reductase [Amino acid	87.31
cd01339		300	LDH-like_MDH L-lactate dehydrogenase-like malate d	87.25
PRK14170		284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.25
PRK14106		450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.18
PRK05808		282	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.17
TIGR01763		305	MalateDH_bact malate dehydrogenase, NAD-dependent.	87.07
PRK14168		297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.06
PRK15116		268	sulfur acceptor protein CsdL; Provisional	86.92
PRK14181		287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.57
PRK12550		272	shikimate 5-dehydrogenase; Reviewed	86.54
PRK14187		294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.52
TIGR00872		298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	86.48
TIGR01758		324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	86.38
TIGR01915		219	npdG NADPH-dependent F420 reductase. This model re	86.01
PF01262		168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	85.95
cd05297		423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	85.74
COG0578		532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	85.7
PRK07679		279	pyrroline-5-carboxylate reductase; Reviewed	85.69
PRK14185		293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.42
PRK06141		314	ornithine cyclodeaminase; Validated	85.31
PLN02516		299	methylenetetrahydrofolate dehydrogenase (NADP+)	85.2
PRK14193		284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.17
PTZ00345		365	glycerol-3-phosphate dehydrogenase; Provisional	85.16
PRK14169		282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.1
PRK14171		288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.1
PRK06928		277	pyrroline-5-carboxylate reductase; Reviewed	84.86
PRK14851		679	hypothetical protein; Provisional	84.68
PRK14188		296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.65
PRK08644		212	thiamine biosynthesis protein ThiF; Provisional	84.62
PRK12480		330	D-lactate dehydrogenase; Provisional	84.55
PRK00094		325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	84.48
PRK06476		258	pyrroline-5-carboxylate reductase; Reviewed	84.46
PRK13243		333	glyoxylate reductase; Reviewed	84.31
PRK14182		282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.28
COG0111		324	SerA Phosphoglycerate dehydrogenase and related de	84.23
PRK14173		287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.17
PRK14167		297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.93
PRK06153		393	hypothetical protein; Provisional	83.83
PF01113		124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	83.82
TIGR01408		1008	Ube1 ubiquitin-activating enzyme E1. This model re	83.81
cd00704		323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	83.79
PLN02545		295	3-hydroxybutyryl-CoA dehydrogenase	83.78
PRK14180		282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.66
cd05298		437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	83.64
PRK12921		305	2-dehydropantoate 2-reductase; Provisional	83.54
PRK09599		301	6-phosphogluconate dehydrogenase-like protein; Rev	83.5
PRK06522		304	2-dehydropantoate 2-reductase; Reviewed	83.21
cd01337		310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	83.19
PRK12490		299	6-phosphogluconate dehydrogenase-like protein; Rev	83.08
COG5322		351	Predicted dehydrogenase [General function predicti	83.06
cd01336		325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	82.91
PRK12475		338	thiamine/molybdopterin biosynthesis MoeB-like prot	82.85
PLN02616		364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	82.82
PLN02897		345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	82.73
TIGR02355		240	moeB molybdopterin synthase sulfurylase MoeB. This	82.65
cd00757		228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	82.57
PRK06436		303	glycerate dehydrogenase; Provisional	82.43
PRK02842		427	light-independent protochlorophyllide reductase su	82.38
PRK08291		330	ectoine utilization protein EutC; Validated	82.37
COG1486		442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	82.12
TIGR01381		664	E1_like_apg7 E1-like protein-activating enzyme Gsa	82.12
KOG0029		501	consensus Amine oxidase [Secondary metabolites bio	82.06
PRK05600		370	thiamine biosynthesis protein ThiF; Validated	81.85
TIGR02992		326	ectoine_eutC ectoine utilization protein EutC. Mem	81.84
PLN03139		386	formate dehydrogenase; Provisional	81.79
PRK05442		326	malate dehydrogenase; Provisional	81.63
KOG0685		498	consensus Flavin-containing amine oxidase [Coenzym	81.45
TIGR00507		270	aroE shikimate 5-dehydrogenase. This model finds p	81.18
TIGR01772		312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	80.7
PRK09880		343	L-idonate 5-dehydrogenase; Provisional	80.49
PF07992		201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	80.27
PRK14186		297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.11
TIGR03366		280	HpnZ_proposed putative phosphonate catabolism asso	80.01

>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]	Back alignment and domain information

Probab=100.00  E-value=9.2e-213  Score=1687.29  Aligned_cols=544  Identities=53%  Similarity=0.903  Sum_probs=534.1

Q ss_pred             ceeecccccccccCCCCCcCCCCCHHHhhhcccCCCCCCcccCHHHHHHHHHHHHhhhhcccCCCCCCCChhhHHHHHHH
Q 040403           39 PVIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSTDQQIERFMVDLKRLEVQARDGPTDPNALAKWRILNR  118 (623)
Q Consensus        39 ~~~~~~~g~~ll~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~ky~~L~~  118 (623)
                      +..++.+|+++|+||++|||+|||.+|||+|||||||||.|+|+|+|+.||+.+|++++          ++|+||+||+.
T Consensus        24 ~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~----------~~l~ky~~L~~   93 (582)
T KOG1257|consen   24 PVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLT----------SPLAKYIYLMD   93 (582)
T ss_pred             ccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhcc----------chHHHHHHHHH
Confidence            45578899999999999999999999999999999999999999999999999999999          99999999999


Q ss_pred             hhcccchhhhhhhccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccChhhHHHHHhcCCCCCceEEEEecCceee
Q 040403          119 LHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMKSMVYNWPAEQVDMIVVTDGSRIL  198 (623)
Q Consensus       119 L~~rNe~LFy~ll~~~~~e~lPivYTPtVg~ac~~~s~~~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rIL  198 (623)
                      ||+|||+|||+++++|++|+||||||||||+|||+||++||+|+|||||++|+|||.++|+|||.++|++||||||||||
T Consensus        94 L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerIL  173 (582)
T KOG1257|consen   94 LQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERIL  173 (582)
T ss_pred             HHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccccchhhhHHHHHHhcCCCCCCeeeEEeeccCCccccccCcCCCCcCCCCCCchhhhHhHHHHHHHHHHhC-
Q 040403          199 GLGDLGVQGIGIAVGKLDLYVAAAGINPQRVLPIMIDVGTTNEKLLKDPLYLGLQEHRLDGDEYVSVIDEFMEAIFTRW-  277 (623)
Q Consensus       199 GLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~Rv~g~~Y~~~vdefv~av~~~~-  277 (623)
                      ||||||++|||||||||+|||+||||+|++|||||||||||||+||+||||+|+|++|++|++||+|+||||+||+++| 
T Consensus       174 GLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG  253 (582)
T KOG1257|consen  174 GLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYG  253 (582)
T ss_pred             cccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CceeeecccCCCchHHHHHHHHhccCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchHHHHHHHHHH
Q 040403          278 PNVIVQFEDFQSKWAFKLLQRYRYKYRMFNDDVQGTAGVAVAGLLGAVRAQGRSMIDFPKQKIVVAGAGSAGLGVLNAAR  357 (623)
Q Consensus       278 P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~lAgll~A~r~~g~~~~~l~d~riv~~GAGsAg~GIA~ll~  357 (623)
                      |+++||||||+++|||++|+|||+++|||||||||||+|+|||||+|+|++|++   |+|++|||+|||+||+|||+||+
T Consensus       254 ~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~---lsd~~ilf~GAG~A~~GIA~l~v  330 (582)
T KOG1257|consen  254 PNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKP---LSDHVILFLGAGEAALGIANLIV  330 (582)
T ss_pred             cceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCc---cccceEEEecCchHHhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHHHhcCCCcchhhhccCeEEEEccCCcccCCCC-CCChhhHHhHHHhhhhcccccCCCCCHHHHHhhcCCcEEEeccC
Q 040403          358 KTMARMLGNNESAFDSARSQFWVVDAKGLITEDRE-NIDPDAKPFARKVNEISRQGLWEGASLVEVVQQVKPDVLLGLSA  436 (623)
Q Consensus       358 ~~m~~~~Gls~~~~eeA~~~i~lvD~~GLi~~~r~-~l~~~~~~fA~~~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~  436 (623)
                      .+|+++ |+|+   |||+++|||||++|||+.+|+ +++++|++||++.        ++..+|+|||+.||||||||+|+
T Consensus       331 ~~m~~~-Gl~~---eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~--------~~~~~L~e~V~~vKPtvLiG~S~  398 (582)
T KOG1257|consen  331 MAMVKE-GLSE---EEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDH--------EEIKDLEEAVKEVKPTVLIGASG  398 (582)
T ss_pred             HHHHHc-CCCH---HHHhccEEEEecCceeeccccCCCChhhccccccC--------hHHHHHHHHHHhcCCcEEEeccc
Confidence            999999 9999   999999999999999999997 7999999999643        34568999999999999999999


Q ss_pred             CCCCCCHHHHHHcccCCCCCCEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCccccCCCeeccCCCCccccchhH
Q 040403          437 VGGLFSKEVLEAMRGSTSTRPAIFAMSNPTNNAECTPEEAFSIVGDNIIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPG  516 (623)
Q Consensus       437 ~~g~Ft~evv~~M~a~~~erPIIFaLSNPt~~~E~tpeda~~wT~Grai~AtGsPF~pv~~~~G~~~~p~Q~NN~yiFPG  516 (623)
                      +||+|||||||+| ++++||||||||||||+++||||||||+||+|||||||||||+||+| +||+|+||||||+|+|||
T Consensus       399 ~~g~Fteevl~~M-a~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~-~gK~~~pgQ~NN~yiFPG  476 (582)
T KOG1257|consen  399 VGGAFTEEVLRAM-AKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEY-NGKVYVPGQGNNAYIFPG  476 (582)
T ss_pred             CCccCCHHHHHHH-HhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCcee-CCcEecccCCceeEecch
Confidence            9999999999999 99999999999999999999999999999999999999999999999 899999999999999999


Q ss_pred             HHHHHHHcCCcccCHHHHHHHHHHHHcccCcccccCCccccCCCCcccchHHHHHHHHHHHHHcCccccccCccchhccc
Q 040403          517 VGLGTLLSGSRIISDGMLQAAAECLAEYMTEEEVVKGKIYPSISSIRNITKEVAAAVVKEALEEDLAEGYRGVDARELQR  596 (623)
Q Consensus       517 iglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~p~  596 (623)
                      ||||++++++++|||+||++||++||++++++++++|.||||+++||+||.+||++|+++|+++|+|+        .+|+
T Consensus       477 i~Lg~vlsg~~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~--------~~p~  548 (582)
T KOG1257|consen  477 IGLGVVLSGARRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLAT--------RYPE  548 (582)
T ss_pred             HHHHHHHcCCccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccc--------cCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999        4676


Q ss_pred             CCHHHHHHHHHhCCcccCCCCCc
Q 040403          597 FNQEELLEFVELNMWHPEYPTLV  619 (623)
Q Consensus       597 ~~~~dl~~~I~~~mw~P~Y~~~v  619 (623)
                        |+|+++|++++||+|+|++++
T Consensus       549 --P~d~~~~~~~~~y~~~Y~~~~  569 (582)
T KOG1257|consen  549 --PKDKEKFIEESMYNPEYRNSL  569 (582)
T ss_pred             --cccHHHHHHhccCCccccccc
Confidence              999999999999999999975

>PRK13529 malate dehydrogenase; Provisional	Back alignment and domain information

>PTZ00317 NADP-dependent malic enzyme; Provisional	Back alignment and domain information

>PLN03129 NADP-dependent malic enzyme; Provisional	Back alignment and domain information

>COG0281 SfcA Malic enzyme [Energy production and conversion]	Back alignment and domain information

>PRK12862 malic enzyme; Reviewed	Back alignment and domain information

>PRK12861 malic enzyme; Reviewed	Back alignment and domain information

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	Back alignment and domain information

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1	Back alignment and domain information

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e	Back alignment and domain information

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme	Back alignment and domain information

>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e	Back alignment and domain information

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2	Back alignment and domain information

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins	Back alignment and domain information

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional	Back alignment and domain information

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)	Back alignment and domain information

>TIGR00936 ahcY adenosylhomocysteinase	Back alignment and domain information

>PLN02494 adenosylhomocysteinase	Back alignment and domain information

>PLN02477 glutamate dehydrogenase	Back alignment and domain information

>TIGR01035 hemA glutamyl-tRNA reductase	Back alignment and domain information

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase	Back alignment and domain information

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3	Back alignment and domain information

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit	Back alignment and domain information

>PRK14982 acyl-ACP reductase; Provisional	Back alignment and domain information

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed	Back alignment and domain information

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases	Back alignment and domain information

>PTZ00075 Adenosylhomocysteinase; Provisional	Back alignment and domain information

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase	Back alignment and domain information

>PRK08306 dipicolinate synthase subunit A; Reviewed	Back alignment and domain information

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1	Back alignment and domain information

>PRK14031 glutamate dehydrogenase; Provisional	Back alignment and domain information

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional	Back alignment and domain information

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK09414 glutamate dehydrogenase; Provisional	Back alignment and domain information

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase	Back alignment and domain information

>PRK14030 glutamate dehydrogenase; Provisional	Back alignment and domain information

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2	Back alignment and domain information

>PLN00203 glutamyl-tRNA reductase	Back alignment and domain information

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase	Back alignment and domain information

>PLN00106 malate dehydrogenase	Back alignment and domain information

>PRK12549 shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase	Back alignment and domain information

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	Back alignment and domain information

>TIGR00518 alaDH alanine dehydrogenase	Back alignment and domain information

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain	Back alignment and domain information

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4	Back alignment and domain information

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional	Back alignment and domain information

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type	Back alignment and domain information

>PRK13940 glutamyl-tRNA reductase; Provisional	Back alignment and domain information

>PRK06223 malate dehydrogenase; Reviewed	Back alignment and domain information

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated	Back alignment and domain information

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase	Back alignment and domain information

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit	Back alignment and domain information

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	Back alignment and domain information

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family	Back alignment and domain information

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2	Back alignment and domain information

>PRK00676 hemA glutamyl-tRNA reductase; Validated	Back alignment and domain information

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated	Back alignment and domain information

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase	Back alignment and domain information

>PTZ00117 malate dehydrogenase; Provisional	Back alignment and domain information

>PRK08328 hypothetical protein; Provisional	Back alignment and domain information

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated	Back alignment and domain information

>PTZ00082 L-lactate dehydrogenase; Provisional	Back alignment and domain information

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PTZ00325 malate dehydrogenase; Provisional	Back alignment and domain information

>PRK12749 quinate/shikimate dehydrogenase; Reviewed	Back alignment and domain information

>PRK12548 shikimate 5-dehydrogenase; Provisional	Back alignment and domain information

>PRK00066 ldh L-lactate dehydrogenase; Reviewed	Back alignment and domain information

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14027 quinate/shikimate dehydrogenase; Provisional	Back alignment and domain information

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional	Back alignment and domain information

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase	Back alignment and domain information

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	Back alignment and domain information

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E	Back alignment and domain information

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK08223 hypothetical protein; Validated	Back alignment and domain information

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related	Back alignment and domain information

>PRK05086 malate dehydrogenase; Provisional	Back alignment and domain information

>PLN02928 oxidoreductase family protein	Back alignment and domain information

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E	Back alignment and domain information

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK08605 D-lactate dehydrogenase; Validated	Back alignment and domain information

>PRK07680 late competence protein ComER; Validated	Back alignment and domain information

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional	Back alignment and domain information

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)	Back alignment and domain information

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []	Back alignment and domain information

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP	Back alignment and domain information

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated	Back alignment and domain information

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	Back alignment and domain information

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate	Back alignment and domain information

>PRK08374 homoserine dehydrogenase; Provisional	Back alignment and domain information

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related	Back alignment and domain information

>PLN02602 lactate dehydrogenase	Back alignment and domain information

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK15076 alpha-galactosidase; Provisional	Back alignment and domain information

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases	Back alignment and domain information

>PRK08410 2-hydroxyacid dehydrogenase; Provisional	Back alignment and domain information

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional	Back alignment and domain information

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	Back alignment and domain information

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins	Back alignment and domain information

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	Back alignment and domain information

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent	Back alignment and domain information

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK15116 sulfur acceptor protein CsdL; Provisional	Back alignment and domain information

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK12550 shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)	Back alignment and domain information

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent	Back alignment and domain information

>TIGR01915 npdG NADPH-dependent F420 reductase	Back alignment and domain information

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1	Back alignment and domain information

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases	Back alignment and domain information

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	Back alignment and domain information

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK06141 ornithine cyclodeaminase; Validated	Back alignment and domain information

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)	Back alignment and domain information

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional	Back alignment and domain information

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>PRK14851 hypothetical protein; Provisional	Back alignment and domain information

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK08644 thiamine biosynthesis protein ThiF; Provisional	Back alignment and domain information

>PRK12480 D-lactate dehydrogenase; Provisional	Back alignment and domain information

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated	Back alignment and domain information

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed	Back alignment and domain information

>PRK13243 glyoxylate reductase; Reviewed	Back alignment and domain information

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK06153 hypothetical protein; Provisional	Back alignment and domain information

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]	Back alignment and domain information

>TIGR01408 Ube1 ubiquitin-activating enzyme E1	Back alignment and domain information

>cd00704 MDH Malate dehydrogenase	Back alignment and domain information

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase	Back alignment and domain information

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	Back alignment and domain information

>PRK12921 2-dehydropantoate 2-reductase; Provisional	Back alignment and domain information

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed	Back alignment and domain information

>PRK06522 2-dehydropantoate 2-reductase; Reviewed	Back alignment and domain information

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases	Back alignment and domain information

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed	Back alignment and domain information

>COG5322 Predicted dehydrogenase [General function prediction only]	Back alignment and domain information

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases	Back alignment and domain information

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional	Back alignment and domain information

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative	Back alignment and domain information

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative	Back alignment and domain information

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB	Back alignment and domain information

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA	Back alignment and domain information

>PRK06436 glycerate dehydrogenase; Provisional	Back alignment and domain information

>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional	Back alignment and domain information

>PRK08291 ectoine utilization protein EutC; Validated	Back alignment and domain information

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p	Back alignment and domain information

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PRK05600 thiamine biosynthesis protein ThiF; Validated	Back alignment and domain information

>TIGR02992 ectoine_eutC ectoine utilization protein EutC	Back alignment and domain information

>PLN03139 formate dehydrogenase; Provisional	Back alignment and domain information

>PRK05442 malate dehydrogenase; Provisional	Back alignment and domain information

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]	Back alignment and domain information

>TIGR00507 aroE shikimate 5-dehydrogenase	Back alignment and domain information

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent	Back alignment and domain information

>PRK09880 L-idonate 5-dehydrogenase; Provisional	Back alignment and domain information

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Back alignment and domain information

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase	Back alignment and domain information

Homologous Structure Templates